##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 21:29:16 PST 2014",Epoch=1389763756532,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/YPS163/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT YPS163 chrI 101 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.196;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=12.7753;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=0;MQRankSum=0.196;QD=0.80;ReadPosRankSum=-0.065;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:4,11:15:6:43,6,0 chrI 115 . C T 69.57 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=26;Dels=0.00;FS=8.451;HaplotypeScore=11.6889;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=0;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.754;SB=8.93 GT:AD:DP:GQ:PL 1/1:3,4:26:12:102,12,0 chrI 136 . G A 137.06 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=17.2064;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=0;QD=4.15;SB=-5.007e+01 GT:AD:DP:GQ:PL 1/1:0,31:33:21:170,21,0 chrI 166 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;DP=49;Dels=0.00;FS=27.560;HaplotypeScore=9.2711;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=0;MQRankSum=-3.715;QD=0.23;ReadPosRankSum=-2.580;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,33:49:41:41,0,114 chrI 286 . A T 306 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=12.6052;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=1;QD=5.56;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:42:339,42,0 chrI 289 . T C 265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.063;DP=56;Dels=0.00;FS=53.546;HaplotypeScore=18.1580;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=1;MQRankSum=2.173;QD=4.73;ReadPosRankSum=2.500;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:22,34:56:39:298,39,0 chrI 305 . C G 293 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.8612;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=1;QD=5.98;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:42:326,42,0 chrI 349 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=18.79;MQ0=0;QD=2.16;SB=-7.347e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:73,9,0 chrI 476 . G C 110.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=10.6508;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=2;QD=5.01;SB=-8.888e+01 GT:AD:DP:GQ:PL 1/1:0,14:22:18:143,18,0 chrI 509 . G A,T 203.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=15.8732;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.15;MQ0=5;QD=5.08;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/2:0,21,19:40:91:263,151,133,112,0,91 chrI 510 . A T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;DP=41;Dels=0.00;FS=9.728;HaplotypeScore=22.6992;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=5;MQRankSum=-0.919;QD=2.29;ReadPosRankSum=4.151;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:22,19:41:99:124,0,114 chrI 519 . C T 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DP=45;Dels=0.00;FS=44.248;HaplotypeScore=20.1549;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=5;MQRankSum=0.410;QD=2.73;ReadPosRankSum=-2.298;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,21:45:99:153,0,115 chrI 521 . A G 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.395;DP=57;Dels=0.00;FS=50.220;HaplotypeScore=13.4726;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=6;MQRankSum=-1.378;QD=2.82;ReadPosRankSum=-2.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,29:57:99:191,0,139 chrI 531 . C T 224.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;DP=93;Dels=0.00;FS=29.837;HaplotypeScore=22.5826;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=9;MQRankSum=-0.861;QD=2.41;ReadPosRankSum=-1.438;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:32,61:93:99:254,0,146 chrI 595 . C G 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=113;Dels=0.00;FS=13.035;HaplotypeScore=37.7893;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=6;MQRankSum=1.269;QD=0.45;ReadPosRankSum=1.860;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:66,44:113:81:81,0,331 chrI 610 . G A 376 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=18.25;MQ0=4;QD=4.09;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:51:409,51,0 chrI 627 . C T 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.661;DP=50;Dels=0.00;FS=52.162;HaplotypeScore=29.9207;MLEAC=1;MLEAF=0.500;MQ=20.18;MQ0=4;MQRankSum=2.804;QD=1.32;ReadPosRankSum=-1.484;SB=-9.102e+01 GT:AD:DP:GQ:PL 0/1:25,24:50:82:96,0,82 chrI 628 . G A 77.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;DP=49;Dels=0.00;FS=3.222;HaplotypeScore=29.9207;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=3;MQRankSum=1.558;QD=1.57;ReadPosRankSum=-1.904;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:39,10:49:66:107,0,66 chrI 633 . T C 108.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;DP=49;Dels=0.00;FS=44.750;HaplotypeScore=23.2623;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=3;MQRankSum=2.848;QD=2.20;ReadPosRankSum=1.418;SB=-4.602e+01 GT:AD:DP:GQ:PL 0/1:25,24:49:48:138,0,48 chrI 650 . C A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;DP=50;Dels=0.00;FS=6.256;HaplotypeScore=5.5245;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=3;MQRankSum=1.545;QD=0.23;ReadPosRankSum=-1.937;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,3:50:41:41,0,168 chrI 654 . C T 122.05 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;DP=47;Dels=0.00;FS=19.480;HaplotypeScore=31.6365;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=2;MQRankSum=2.159;QD=2.60;ReadPosRankSum=4.575;SB=-1.495e+02 GT:AD:DP:GQ:PL 0/1:18,28:47:17:152,0,17 chrI 661 . A G 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;DP=45;Dels=0.00;FS=122.458;HaplotypeScore=27.5572;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=1;MQRankSum=2.345;QD=1.29;ReadPosRankSum=0.931;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,24:45:65:88,0,65 chrI 667 . G A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.568;DP=36;Dels=0.00;FS=66.156;HaplotypeScore=13.6698;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=0;MQRankSum=1.035;QD=1.03;ReadPosRankSum=0.748;SB=0.079 GT:AD:DP:GQ:PL 0/1:16,20:36:67:67,0,67 chrI 672 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DP=37;Dels=0.00;FS=57.524;HaplotypeScore=15.5282;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=0;MQRankSum=-0.195;QD=0.97;ReadPosRankSum=2.743;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:28,9:37:66:66,0,67 chrI 681 . G A 147.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=10.5303;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=4.59;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:24:180,24,0 chrI 685 . C T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;DP=30;Dels=0.00;FS=67.674;HaplotypeScore=7.8495;MLEAC=1;MLEAF=0.500;MQ=22.25;MQ0=0;MQRankSum=-0.727;QD=1.20;ReadPosRankSum=0.961;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:22,8:30:66:66,0,66 chrI 693 . T A 151.03 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=17.2820;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=2;QD=4.44;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:24:184,24,0 chrI 726 . T A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DP=87;Dels=0.00;FS=50.898;HaplotypeScore=67.0759;MLEAC=1;MLEAF=0.500;MQ=21.16;MQ0=7;MQRankSum=4.346;QD=0.62;ReadPosRankSum=0.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,20:87:84:84,0,285 chrI 729 . A C 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.460;DP=85;Dels=0.00;FS=34.871;HaplotypeScore=64.8048;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=7;MQRankSum=4.474;QD=0.62;ReadPosRankSum=-0.007;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,20:85:83:83,0,263 chrI 730 . G A 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=51.1899;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=7;MQRankSum=0.053;QD=1.96;ReadPosRankSum=1.275;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:41,36:84:99:195,0,217 chrI 738 . C A 544 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=83;Dels=0.00;FS=4.037;HaplotypeScore=79.7306;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=7;MQRankSum=-0.228;QD=6.55;ReadPosRankSum=0.775;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:72:577,72,0 chrI 741 . A G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;DP=85;Dels=0.00;FS=50.875;HaplotypeScore=21.1496;MLEAC=1;MLEAF=0.500;MQ=21.56;MQ0=7;MQRankSum=2.569;QD=0.22;ReadPosRankSum=2.482;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,11:85:49:49,0,381 chrI 743 . A C,T 414.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.208;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.3211;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.45;MQ0=7;MQRankSum=-0.368;QD=4.93;ReadPosRankSum=2.322;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/2:2,59,23:84:55:474,108,55,365,0,350 chrI 772 . C T 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.580;DP=95;Dels=0.00;FS=107.361;HaplotypeScore=28.6275;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=8;MQRankSum=4.351;QD=1.63;ReadPosRankSum=1.261;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:51,44:95:99:185,0,277 chrI 774 . T C 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;DP=97;Dels=0.01;FS=82.822;HaplotypeScore=43.2533;MLEAC=1;MLEAF=0.500;MQ=22.21;MQ0=8;MQRankSum=3.801;QD=0.97;ReadPosRankSum=1.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,34:96:99:124,0,368 chrI 784 . A G 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=96;Dels=0.00;FS=77.517;HaplotypeScore=30.8653;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=7;MQRankSum=4.459;QD=1.20;ReadPosRankSum=4.596;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,32:96:99:145,0,316 chrI 796 . T C 112.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.776;DP=47;Dels=0.00;FS=2.544;HaplotypeScore=20.8439;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=2;MQRankSum=3.518;QD=2.39;ReadPosRankSum=2.063;SB=-2.855e+01 GT:AD:DP:GQ:PL 1/1:8,39:47:2:142,2,0 chrI 797 . A T 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=45;Dels=0.00;FS=9.675;HaplotypeScore=21.0313;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=1;MQRankSum=4.143;QD=0.34;ReadPosRankSum=2.336;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,22:45:45:45,0,114 chrI 801 . G A 162.03 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=17.5482;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;QD=3.95;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:24:195,24,0 chrI 806 . T A 162.03 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=35.6204;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=4.38;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:24:195,24,0 chrI 807 . G A 191.01 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=23.0827;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=5.16;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:27:224,27,0 chrI 811 . G T 162.03 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=22.9483;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=4.38;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:24:195,24,0 chrI 812 . C G 139.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=28.2237;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=0;MQRankSum=3.530;QD=3.49;ReadPosRankSum=2.429;SB=-2.355e+01 GT:AD:DP:GQ:PL 1/1:9,31:40:2:169,2,0 chrI 814 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;DP=41;Dels=0.00;FS=5.186;HaplotypeScore=27.2572;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=0;MQRankSum=-4.190;QD=0.85;ReadPosRankSum=-0.801;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:23,18:41:65:65,0,99 chrI 825 . G A 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.194;DP=41;Dels=0.00;FS=2.519;HaplotypeScore=16.0481;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=0;MQRankSum=-4.194;QD=0.25;ReadPosRankSum=1.601;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,17:41:40:40,0,121 chrI 826 . T C 153.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;DP=41;Dels=0.00;FS=8.456;HaplotypeScore=16.6982;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=0;MQRankSum=1.059;QD=3.73;ReadPosRankSum=0.091;SB=-2.404e+01 GT:AD:DP:GQ:PL 1/1:2,39:41:24:186,24,0 chrI 827 . A G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.718;DP=42;Dels=0.00;FS=2.519;HaplotypeScore=16.6982;MLEAC=1;MLEAF=0.500;MQ=24.55;MQ0=0;MQRankSum=-3.242;QD=0.71;ReadPosRankSum=1.257;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:25,17:42:60:60,0,118 chrI 831 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;DP=42;Dels=0.00;FS=11.483;HaplotypeScore=9.7199;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=0;MQRankSum=-3.825;QD=0.34;ReadPosRankSum=1.766;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:24,18:42:44:44,0,133 chrI 845 . C T 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DP=42;Dels=0.00;FS=17.732;HaplotypeScore=23.7908;MLEAC=1;MLEAF=0.500;MQ=23.03;MQ0=0;MQRankSum=2.248;QD=1.07;ReadPosRankSum=0.109;SB=-6.541e-03 GT:AD:DP:GQ:PL 0/1:14,15:42:50:75,0,50 chrI 848 . C T 111.14 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=20.0286;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=0;MQRankSum=-0.377;QD=3.09;ReadPosRankSum=1.583;SB=-2.315e+01 GT:AD:DP:GQ:PL 1/1:1,22:36:18:144,18,0 chrI 876 . T C 58.51 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.6041;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=1.77;SB=-4.852e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:91,12,0 chrI 878 . T C 69.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.088;DP=34;Dels=0.00;FS=13.326;HaplotypeScore=8.5737;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=0;MQRankSum=4.089;QD=2.05;ReadPosRankSum=-0.397;SB=-7.942e-01 GT:AD:DP:GQ:PL 0/1:18,16:34:4:99,0,4 chrI 892 . G T 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=39.5255;MLEAC=1;MLEAF=0.500;MQ=25.90;MQ0=0;MQRankSum=-1.051;QD=1.68;ReadPosRankSum=-1.494;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:6,35:41:27:99,0,27 chrI 893 . T A 88.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;DP=41;Dels=0.00;FS=8.343;HaplotypeScore=39.5255;MLEAC=1;MLEAF=0.500;MQ=25.90;MQ0=0;MQRankSum=2.433;QD=2.15;ReadPosRankSum=-1.773;SB=-7.802e+01 GT:AD:DP:GQ:PL 0/1:14,27:41:24:118,0,24 chrI 899 . C T 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;DP=53;Dels=0.00;FS=27.653;HaplotypeScore=45.7352;MLEAC=1;MLEAF=0.500;MQ=25.71;MQ0=0;MQRankSum=4.028;QD=2.62;ReadPosRankSum=1.184;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:33,20:53:32:169,0,32 chrI 900 . A G 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;DP=54;Dels=0.00;FS=30.332;HaplotypeScore=45.7352;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=3.896;QD=2.52;ReadPosRankSum=1.299;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:34,20:54:32:166,0,32 chrI 904 . G A 257 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=26.9711;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=4.67;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:36:290,36,0 chrI 925 . T C 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=25.7089;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=0.748;QD=6.70;ReadPosRankSum=1.689;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:72:576,72,0 chrI 929 . A C 318.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;DP=88;Dels=0.00;FS=50.293;HaplotypeScore=28.8383;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=-2.693;QD=3.61;ReadPosRankSum=-1.166;SB=-4.960e+02 GT:AD:DP:GQ:PL 0/1:26,62:88:99:348,0,142 chrI 968 . C T 287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.760;DP=106;Dels=0.00;FS=92.020;HaplotypeScore=27.2753;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=1;MQRankSum=4.608;QD=2.71;ReadPosRankSum=-1.691;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:43,63:106:99:317,0,525 chrI 978 . T A 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;DP=96;Dels=0.00;FS=108.542;HaplotypeScore=26.0262;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=1;MQRankSum=5.671;QD=1.77;ReadPosRankSum=0.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,46:96:99:200,0,571 chrI 980 . A G 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.492;DP=96;Dels=0.00;FS=108.542;HaplotypeScore=22.8062;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=1;MQRankSum=4.859;QD=1.60;ReadPosRankSum=0.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,46:96:99:184,0,569 chrI 981 . A C 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DP=97;Dels=0.00;FS=80.841;HaplotypeScore=23.5949;MLEAC=1;MLEAF=0.500;MQ=26.40;MQ0=1;MQRankSum=4.760;QD=1.84;ReadPosRankSum=0.240;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:43,54:97:99:208,0,569 chrI 993 . T G 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=95;Dels=0.00;FS=99.963;HaplotypeScore=7.0803;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=6;MQRankSum=4.182;QD=2.38;ReadPosRankSum=-0.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,46:95:99:256,0,497 chrI 1008 . A G 607 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=75;Dels=0.00;FS=5.708;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=8;MQRankSum=-1.060;QD=8.09;ReadPosRankSum=1.681;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:81:640,81,0 chrI 1013 . T C 591 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=9;QD=7.99;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:81:624,81,0 chrI 1025 . C T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.137;DP=71;Dels=0.00;FS=1.473;HaplotypeScore=26.2658;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=13;MQRankSum=-1.200;QD=1.82;ReadPosRankSum=-0.298;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,14:71:99:159,0,260 chrI 1026 . C T 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;DP=72;Dels=0.00;FS=3.204;HaplotypeScore=26.0678;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=13;MQRankSum=-1.572;QD=1.13;ReadPosRankSum=-0.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,14:72:99:111,0,321 chrI 1035 . A T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;DP=65;Dels=0.00;FS=44.441;HaplotypeScore=35.7069;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=13;MQRankSum=1.433;QD=0.19;ReadPosRankSum=3.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,18:65:42:42,0,406 chrI 1037 . C T 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.870;DP=63;Dels=0.00;FS=8.139;HaplotypeScore=22.0158;MLEAC=1;MLEAF=0.500;MQ=18.32;MQ0=13;MQRankSum=1.749;QD=2.05;ReadPosRankSum=1.042;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:32,31:63:99:159,0,207 chrI 1039 . C T 117.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=7.845;HaplotypeScore=23.8312;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=13;MQRankSum=2.126;QD=1.80;ReadPosRankSum=0.765;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:32,33:65:99:147,0,233 chrI 1040 . A C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DP=66;Dels=0.00;FS=52.959;HaplotypeScore=24.6199;MLEAC=1;MLEAF=0.500;MQ=18.52;MQ0=13;MQRankSum=1.645;QD=0.21;ReadPosRankSum=3.722;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,18:66:44:44,0,388 chrI 1074 . C A 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;DP=134;Dels=0.00;FS=11.019;HaplotypeScore=8.9516;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=13;MQRankSum=-1.820;QD=0.66;ReadPosRankSum=4.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,22:134:99:119,0,1134 chrI 1101 . G A 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.420;DP=107;Dels=0.00;FS=14.194;HaplotypeScore=34.0531;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=5;MQRankSum=-4.890;QD=2.56;ReadPosRankSum=-5.156;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:63,43:107:99:304,0,912 chrI 1164 . T C 106.13 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=0;QD=5.05;SB=-4.488e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:18:139,18,0 chrI 1227 . T C 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;DP=53;Dels=0.00;FS=6.263;HaplotypeScore=13.1719;MLEAC=1;MLEAF=0.500;MQ=17.55;MQ0=8;MQRankSum=2.182;QD=1.59;ReadPosRankSum=-2.924;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,8:53:99:114,0,114 chrI 1263 . C T 1502 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=13;QD=12.02;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1535,186,0 chrI 1303 . G T 1971.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.342;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.8588;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=6;MQRankSum=3.272;QD=11.07;ReadPosRankSum=3.831;SB=-9.480e+02 GT:AD:DP:GQ:PL 0/1:40,138:178:32:2001,0,32 chrI 1368 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DP=83;Dels=0.00;FS=17.910;HaplotypeScore=17.4131;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=4;MQRankSum=-1.921;QD=0.14;ReadPosRankSum=0.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,23:83:41:41,0,634 chrI 1370 . A T 397.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=86;Dels=0.00;FS=27.234;HaplotypeScore=21.6857;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=4;MQRankSum=3.903;QD=4.62;ReadPosRankSum=-1.991;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:46,40:86:99:427,0,240 chrI 1379 . T C 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;DP=63;Dels=0.00;FS=21.818;HaplotypeScore=23.1074;MLEAC=1;MLEAF=0.500;MQ=22.34;MQ0=4;MQRankSum=-0.544;QD=3.06;ReadPosRankSum=-0.066;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:36,25:63:99:223,0,223 chrI 1382 . G A 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DP=56;Dels=0.00;FS=16.956;HaplotypeScore=7.4344;MLEAC=1;MLEAF=0.500;MQ=20.32;MQ0=5;MQRankSum=-1.407;QD=1.98;ReadPosRankSum=-0.124;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:34,22:56:99:141,0,237 chrI 1397 . A G 504 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=60;Dels=0.00;FS=3.854;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=9;MQRankSum=-1.121;QD=8.40;ReadPosRankSum=1.597;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:69:537,69,0 chrI 1433 . A G 522.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;DP=80;Dels=0.00;FS=22.764;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=7;MQRankSum=0.241;QD=6.53;ReadPosRankSum=0.922;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:27,53:80:99:552,0,206 chrI 1483 . C A 476 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=0;QD=13.60;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:509,63,0 chrI 1505 . T G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=15;Dels=0.00;FS=5.021;HaplotypeScore=6.5824;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=0;MQRankSum=-1.061;QD=1.73;ReadPosRankSum=-1.626;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:10,4:15:34:56,0,34 chrI 1506 . T G 89.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=7.6470;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=6.38;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:122,15,0 chrI 1547 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=0;QD=1.49;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:46,6,0 chrI 1565 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=6.3179;MLEAC=2;MLEAF=1.00;MQ=16.56;MQ0=0;MQRankSum=0.496;QD=1.27;ReadPosRankSum=0.496;SB=-5.180e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:6:49,6,0 chrI 1590 . T C 129.06 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=1;QD=3.59;SB=-2.607e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:21:162,21,0 chrI 1609 . G A 436 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=18.83;MQ0=8;QD=5.19;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:60:469,60,0 chrI 1658 . C T 799 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=16;MQRankSum=-0.846;QD=7.83;ReadPosRankSum=1.410;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:84:832,84,0 chrI 1762 . T C 906.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.130;DP=662;Dels=0.00;FS=8.787;HaplotypeScore=334.9342;MLEAC=1;MLEAF=0.500;MQ=31.25;MQ0=18;MQRankSum=3.442;QD=1.37;ReadPosRankSum=0.806;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:552,110:662:99:936,0,8093 chrI 1770 . T G 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.390;DP=686;Dels=0.00;FS=6.442;HaplotypeScore=440.3028;MLEAC=1;MLEAF=0.500;MQ=31.08;MQ0=17;MQRankSum=-3.663;QD=0.16;ReadPosRankSum=0.381;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:560,124:686:99:141,0,10675 chrI 1774 . A G 3395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.596;DP=720;Dels=0.00;FS=2.707;HaplotypeScore=339.6484;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=18;MQRankSum=1.354;QD=4.72;ReadPosRankSum=3.733;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:495,222:720:99:3395,0,6673 chrI 1802 . T C 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.360;DP=609;Dels=0.00;FS=17.949;HaplotypeScore=151.1406;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=23;MQRankSum=2.802;QD=0.49;ReadPosRankSum=-1.358;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:527,82:609:99:326,0,7849 chrI 1804 . T A 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;DP=617;Dels=0.00;FS=12.609;HaplotypeScore=107.5893;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=31;MQRankSum=3.367;QD=0.35;ReadPosRankSum=0.669;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:548,68:617:99:246,0,8032 chrI 1918 . A G 414.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=15.4284;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=3;MQRankSum=-2.552;QD=2.59;ReadPosRankSum=0.386;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:72,88:160:99:444,0,1137 chrI 1927 . G A 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.349;DP=158;Dels=0.00;FS=4.726;HaplotypeScore=18.1090;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=3;MQRankSum=-1.613;QD=1.98;ReadPosRankSum=0.388;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:82,75:158:99:343,0,1290 chrI 1978 . G A 601.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.447;DP=187;Dels=0.00;FS=53.536;HaplotypeScore=25.9469;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=18;MQRankSum=-2.676;QD=3.21;ReadPosRankSum=-1.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,60:187:99:631,0,1300 chrI 1981 . T A 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DP=188;Dels=0.00;FS=31.380;HaplotypeScore=45.6547;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=18;MQRankSum=1.100;QD=0.55;ReadPosRankSum=-0.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,26:188:99:133,0,1987 chrI 1990 . T G 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239;DP=186;Dels=0.00;FS=18.090;HaplotypeScore=50.2235;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=18;MQRankSum=1.237;QD=0.13;ReadPosRankSum=1.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,23:186:54:54,0,2066 chrI 2029 . T C 2730 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=179;Dels=0.00;FS=11.941;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=7;MQRankSum=1.631;QD=15.25;ReadPosRankSum=1.611;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,178:179:99:2763,341,0 chrI 2050 . G T 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DP=197;Dels=0.00;FS=8.820;HaplotypeScore=10.2272;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=8;MQRankSum=0.221;QD=1.23;ReadPosRankSum=0.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,35:197:99:272,0,1826 chrI 2053 . G A 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.725;DP=204;Dels=0.00;FS=12.938;HaplotypeScore=24.9202;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=8;MQRankSum=3.075;QD=0.96;ReadPosRankSum=-1.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,41:204:99:225,0,1934 chrI 2068 . C A 741.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.325;DP=261;Dels=0.00;FS=50.005;HaplotypeScore=45.2231;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=11;MQRankSum=1.670;QD=2.84;ReadPosRankSum=1.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,79:261:99:771,0,2017 chrI 2113 . A G 3087.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.772;DP=412;Dels=0.00;FS=72.549;HaplotypeScore=73.1916;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=15;MQRankSum=1.656;QD=7.49;ReadPosRankSum=-1.202;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:124,287:412:99:3117,0,876 chrI 2146 . G A 2093.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.512;DP=568;Dels=0.00;FS=62.092;HaplotypeScore=30.9170;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=39;MQRankSum=1.468;QD=3.68;ReadPosRankSum=0.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:315,253:568:99:2123,0,2655 chrI 2171 . G T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.810;DP=578;Dels=0.00;FS=1.646;HaplotypeScore=50.0371;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=50;MQRankSum=-0.418;QD=0.40;ReadPosRankSum=0.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:472,102:578:99:261,0,4012 chrI 2203 . C T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.938;DP=469;Dels=0.00;FS=0.622;HaplotypeScore=116.4575;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=44;MQRankSum=0.647;QD=0.07;ReadPosRankSum=-3.019;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:396,66:469:64:64,0,3493 chrI 2207 . A G 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.638;DP=447;Dels=0.00;FS=10.643;HaplotypeScore=169.9790;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=43;MQRankSum=-0.455;QD=1.00;ReadPosRankSum=-4.068;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:340,106:447:99:478,0,3184 chrI 2216 . G A 908.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.547;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=178.3039;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=34;MQRankSum=-2.952;QD=2.13;ReadPosRankSum=-3.625;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:253,173:426:99:938,0,2267 chrI 2219 . A T 389.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.449;DP=405;Dels=0.00;FS=61.612;HaplotypeScore=228.0935;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=31;MQRankSum=-3.781;QD=0.96;ReadPosRankSum=0.313;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:242,98:405:99:419,0,2293 chrI 2220 . G T 351.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=398;Dels=0.00;FS=23.771;HaplotypeScore=227.3940;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=31;MQRankSum=-2.366;QD=0.88;ReadPosRankSum=-0.418;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:306,89:398:99:381,0,2514 chrI 2223 . T A 401.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.312;DP=384;Dels=0.02;FS=11.498;HaplotypeScore=302.4084;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=30;MQRankSum=-2.787;QD=1.04;ReadPosRankSum=-1.162;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:289,89:378:99:431,0,2360 chrI 2228 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.353;DP=363;Dels=0.00;FS=0.000;HaplotypeScore=233.7662;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=26;MQRankSum=-0.077;QD=0.09;ReadPosRankSum=2.071;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:297,62:363:64:64,0,2717 chrI 2287 . T C 1454.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;DP=242;Dels=0.00;FS=16.697;HaplotypeScore=63.6664;MLEAC=1;MLEAF=0.500;MQ=31.73;MQ0=0;MQRankSum=-2.152;QD=6.01;ReadPosRankSum=1.687;SB=-7.360e+02 GT:AD:DP:GQ:PL 0/1:118,124:242:99:1484,0,402 chrI 2323 . C T 504.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.034;DP=164;Dels=0.00;FS=14.627;HaplotypeScore=12.0787;MLEAC=1;MLEAF=0.500;MQ=32.96;MQ0=0;MQRankSum=2.511;QD=3.07;ReadPosRankSum=2.061;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:73,90:164:99:534,0,961 chrI 2331 . A C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=154;Dels=0.00;FS=2.561;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=1;MQRankSum=-0.230;QD=10.34;ReadPosRankSum=1.020;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:3,151:154:99:1625,203,0 chrI 2340 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=128;Dels=0.00;FS=2.504;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=2;MQRankSum=0.766;QD=9.00;ReadPosRankSum=2.944;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:3,124:128:99:1185,150,0 chrI 2353 . T C 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=108;Dels=0.00;FS=48.195;HaplotypeScore=68.4428;MLEAC=1;MLEAF=0.500;MQ=28.98;MQ0=3;MQRankSum=-0.319;QD=0.17;ReadPosRankSum=1.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,29:108:48:48,0,796 chrI 2358 . C G 390.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=92;Dels=0.00;FS=19.362;HaplotypeScore=70.0202;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=3;MQRankSum=1.814;QD=4.24;ReadPosRankSum=3.406;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:23,69:92:99:420,0,143 chrI 2371 . T A 611 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=3;QD=7.73;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:78:644,78,0 chrI 2379 . G A 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DP=80;Dels=0.00;FS=11.598;HaplotypeScore=37.7208;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=3;MQRankSum=-1.962;QD=0.18;ReadPosRankSum=0.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,13:80:44:44,0,431 chrI 2383 . C A 291.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.777;DP=74;Dels=0.00;FS=11.199;HaplotypeScore=29.0148;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=3;MQRankSum=1.967;QD=3.93;ReadPosRankSum=0.747;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/1:14,44:74:80:321,0,80 chrI 2384 . T C 353.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=73;Dels=0.00;FS=15.919;HaplotypeScore=29.0148;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=3;MQRankSum=1.704;QD=4.84;ReadPosRankSum=-0.596;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:13,60:73:73:383,0,73 chrI 2406 . A C 377.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.439;DP=78;Dels=0.00;FS=26.330;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=7;MQRankSum=2.140;QD=4.83;ReadPosRankSum=0.238;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:19,59:78:48:407,0,48 chrI 2418 . G A 395.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.338;DP=66;Dels=0.00;FS=22.572;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=7;MQRankSum=1.703;QD=5.99;ReadPosRankSum=0.555;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:18,48:66:21:425,0,21 chrI 2419 . T C 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DP=66;Dels=0.00;FS=22.572;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=22.13;MQ0=7;MQRankSum=1.917;QD=5.73;ReadPosRankSum=0.438;SB=-2.260e+02 GT:AD:DP:GQ:PL 0/1:18,48:66:25:408,0,25 chrI 2435 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=75;Dels=0.00;FS=179.842;HaplotypeScore=17.7854;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=5;MQRankSum=0.270;QD=0.14;ReadPosRankSum=-0.426;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:47,28:75:40:40,0,340 chrI 2441 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=170.077;HaplotypeScore=53.3997;MLEAC=1;MLEAF=0.500;MQ=21.15;MQ0=4;MQRankSum=-0.560;QD=0.70;ReadPosRankSum=0.687;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:47,25:73:81:81,0,299 chrI 2442 . A C 107.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;DP=74;Dels=0.00;FS=60.374;HaplotypeScore=53.3997;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=4;MQRankSum=3.110;QD=1.45;ReadPosRankSum=-0.805;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,22:74:99:137,0,224 chrI 2446 . C G 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DP=70;Dels=0.00;FS=58.961;HaplotypeScore=37.4270;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=4;MQRankSum=3.570;QD=1.36;ReadPosRankSum=-1.480;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,21:70:99:125,0,240 chrI 2447 . G A 130.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.020;DP=68;Dels=0.00;FS=97.412;HaplotypeScore=35.7225;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=4;MQRankSum=-2.253;QD=1.91;ReadPosRankSum=2.442;SB=-6.015e+00 GT:AD:DP:GQ:PL 0/1:30,38:68:99:160,0,178 chrI 2449 . T C 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;DP=68;Dels=0.00;FS=55.069;HaplotypeScore=35.7225;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=4;MQRankSum=3.643;QD=1.59;ReadPosRankSum=-1.992;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,20:68:99:138,0,225 chrI 2450 . T C 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.075;DP=72;Dels=0.00;FS=69.584;HaplotypeScore=38.0885;MLEAC=1;MLEAF=0.500;MQ=22.80;MQ0=4;MQRankSum=-2.365;QD=1.75;ReadPosRankSum=2.980;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:32,40:72:99:156,0,210 chrI 2451 . A T 113.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DP=75;Dels=0.00;FS=57.431;HaplotypeScore=38.0885;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=4;MQRankSum=3.156;QD=1.51;ReadPosRankSum=-1.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,20:75:99:143,0,241 chrI 2455 . G C 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DP=77;Dels=0.00;FS=66.391;HaplotypeScore=24.3184;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=4;MQRankSum=3.012;QD=1.30;ReadPosRankSum=-2.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,22:77:99:130,0,294 chrI 2468 . C T 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.739;DP=81;Dels=0.00;FS=190.241;HaplotypeScore=11.6753;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=4;MQRankSum=1.171;QD=2.37;ReadPosRankSum=-0.148;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:46,35:81:99:222,0,213 chrI 2477 . G A 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.202;DP=94;Dels=0.00;FS=83.681;HaplotypeScore=17.6298;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=5;MQRankSum=1.291;QD=1.64;ReadPosRankSum=0.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,29:94:99:184,0,400 chrI 2478 . G C 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;DP=94;Dels=0.00;FS=83.681;HaplotypeScore=20.5098;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=5;MQRankSum=1.169;QD=1.39;ReadPosRankSum=0.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,29:94:99:161,0,418 chrI 2480 . A G 130.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.301;DP=96;Dels=0.00;FS=78.143;HaplotypeScore=10.5173;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=5;MQRankSum=1.209;QD=1.35;ReadPosRankSum=0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,29:96:99:160,0,455 chrI 2488 . T A 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;DP=111;Dels=0.00;FS=79.874;HaplotypeScore=29.5939;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=5;MQRankSum=1.174;QD=0.79;ReadPosRankSum=-0.007;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,33:111:99:118,0,563 chrI 2500 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;DP=102;Dels=0.00;FS=65.834;HaplotypeScore=18.5905;MLEAC=1;MLEAF=0.500;MQ=27.53;MQ0=5;MQRankSum=0.771;QD=0.70;ReadPosRankSum=1.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,32:102:99:101,0,618 chrI 2501 . A G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.244;DP=101;Dels=0.00;FS=69.609;HaplotypeScore=17.6964;MLEAC=1;MLEAF=0.500;MQ=27.51;MQ0=5;MQRankSum=1.052;QD=0.86;ReadPosRankSum=0.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,34:101:99:117,0,607 chrI 2524 . T C 545.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.793;DP=116;Dels=0.00;FS=47.194;HaplotypeScore=71.3041;MLEAC=1;MLEAF=0.500;MQ=29.25;MQ0=10;MQRankSum=-1.124;QD=4.70;ReadPosRankSum=2.168;SB=-4.590e+02 GT:AD:DP:GQ:PL 0/1:37,78:116:99:575,0,288 chrI 2531 . G T 526.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.359;DP=116;Dels=0.00;FS=58.427;HaplotypeScore=69.2746;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=10;MQRankSum=-0.917;QD=4.53;ReadPosRankSum=0.843;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:39,77:116:99:556,0,313 chrI 2532 . T C 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.803;DP=116;Dels=0.00;FS=67.668;HaplotypeScore=69.2746;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=10;MQRankSum=-2.460;QD=0.36;ReadPosRankSum=1.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,32:116:72:72,0,812 chrI 2535 . C A 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.214;DP=114;Dels=0.00;FS=72.510;HaplotypeScore=69.2746;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=10;MQRankSum=-1.837;QD=0.74;ReadPosRankSum=1.520;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,35:114:99:114,0,721 chrI 2536 . A G 491.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.730;DP=115;Dels=0.00;FS=47.540;HaplotypeScore=70.0633;MLEAC=1;MLEAF=0.500;MQ=29.50;MQ0=10;MQRankSum=-0.959;QD=4.27;ReadPosRankSum=1.485;SB=-4.260e+02 GT:AD:DP:GQ:PL 0/1:36,78:115:99:521,0,317 chrI 2542 . T G 580.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639;DP=122;Dels=0.00;FS=36.010;HaplotypeScore=66.0769;MLEAC=1;MLEAF=0.500;MQ=29.55;MQ0=10;MQRankSum=-1.117;QD=4.75;ReadPosRankSum=1.513;SB=-5.570e+02 GT:AD:DP:GQ:PL 0/1:40,82:122:99:610,0,338 chrI 2573 . G C 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DP=170;Dels=0.01;FS=50.004;HaplotypeScore=24.3355;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=10;MQRankSum=4.470;QD=2.64;ReadPosRankSum=-0.880;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,48:169:99:478,0,770 chrI 2610 . T C 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;DP=167;Dels=0.00;FS=91.448;HaplotypeScore=82.0121;MLEAC=1;MLEAF=0.500;MQ=33.47;MQ0=2;MQRankSum=-1.320;QD=0.61;ReadPosRankSum=1.691;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:121,45:167:99:132,0,1236 chrI 2611 . G A 418.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DP=166;Dels=0.04;FS=70.596;HaplotypeScore=81.0254;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=2;MQRankSum=-4.696;QD=2.52;ReadPosRankSum=0.342;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:79,80:160:99:448,0,854 chrI 2612 . A T 119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;DP=166;Dels=0.00;FS=100.677;HaplotypeScore=80.4470;MLEAC=1;MLEAF=0.500;MQ=33.98;MQ0=2;MQRankSum=-1.680;QD=0.72;ReadPosRankSum=1.113;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:119,47:166:99:149,0,1235 chrI 2613 . A T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;DP=167;Dels=0.00;FS=4.280;HaplotypeScore=78.7827;MLEAC=1;MLEAF=0.500;MQ=33.60;MQ0=2;MQRankSum=-4.618;QD=0.28;ReadPosRankSum=0.471;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:139,28:167:76:76,0,1264 chrI 2647 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=176;Dels=0.00;FS=25.598;HaplotypeScore=27.0727;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=2;MQRankSum=-5.488;QD=0.08;ReadPosRankSum=-0.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,36:176:44:44,0,946 chrI 2718 . C T 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.219;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.3133;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-0.385;QD=16.57;ReadPosRankSum=1.604;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:928,111,0 chrI 2731 . G C 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=59;Dels=0.00;FS=15.738;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;MQRankSum=3.975;QD=14.27;ReadPosRankSum=1.793;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:6,53:59:99:875,111,0 chrI 2734 . A G 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=1.374;QD=15.16;ReadPosRankSum=1.613;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:912,114,0 chrI 2825 . G C 1026 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=15.78;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1059,135,0 chrI 2870 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=48.8995;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=16.46;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:889,111,0 chrI 2891 . G T 905 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=17.08;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:938,114,0 chrI 2970 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=16.58;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:912,114,0 chrI 3208 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.88;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:60:99:1226,144,0 chrI 3279 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.87;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1170,138,0 chrI 3313 . A C 762 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.14;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:795,99,0 chrI 3328 . T C 842 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.51;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:875,108,0 chrI 3389 . C T 868 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=16.38;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:901,108,0 chrI 3462 . A T 1315 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.92;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1348,159,0 chrI 3522 . A C 1110 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1143,141,0 chrI 3584 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.80;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1208,153,0 chrI 3942 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.54;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1535,186,0 chrI 4091 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.50;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1503,186,0 chrI 4119 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.92;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1454,177,0 chrI 4206 . T C 1410 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.55;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1443,177,0 chrI 4340 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=13.17;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1100,132,0 chrI 4508 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.63;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1549,192,0 chrI 4597 . G C 1197 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=16.86;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1230,150,0 chrI 4801 . T C 749 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=14.13;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:53:96:782,96,0 chrI 4813 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=16.58;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:862,102,0 chrI 4818 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=13.82;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:724,84,0 chrI 4831 . A T 654 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=11.89;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:687,81,0 chrI 4836 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=10.67;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:75:609,75,0 chrI 4859 . T C 602 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=11.58;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:635,78,0 chrI 4949 . C G 1167 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.45;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1200,150,0 chrI 4993 . C T 849 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=13.06;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:882,105,0 chrI 5030 . A G 57.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=0.369;QD=0.94;ReadPosRankSum=1.448;SB=-6.235e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:12:90,12,0 chrI 5031 . C A 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=0.99;SB=-6.595e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:12:93,12,0 chrI 5035 . C G 576 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7049;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=8.23;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:75:609,75,0 chrI 5218 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=16.39;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1213,144,0 chrI 5237 . C A 1154 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.48;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1187,141,0 chrI 5466 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=17.58;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1492,186,0 chrI 5484 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.63;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1430,168,0 chrI 5569 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.90;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1662,204,0 chrI 5576 . G C 1591 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.48;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1624,203,0 chrI 5627 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.17;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1664,204,0 chrI 5741 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.39;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1285,159,0 chrI 5779 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.97;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1311,159,0 chrI 6001 . A G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=3.039;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.385;QD=17.90;ReadPosRankSum=2.322;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1071,135,0 chrI 6031 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=16.49;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:973,120,0 chrI 6059 . A T 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=2.757;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.617;QD=12.90;ReadPosRankSum=2.375;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:897,111,0 chrI 6091 . C T 552 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=9.52;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:69:585,69,0 chrI 6104 . T G 523 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=10.06;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:69:556,69,0 chrI 6146 . A G 769 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=13.98;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:802,99,0 chrI 6153 . G C 836 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=15.20;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:869,108,0 chrI 6356 . A C 928 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.19;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:961,117,0 chrI 6365 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=16.73;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:886,105,0 chrI 6556 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.91;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1179,144,0 chrI 6652 . T C 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=55;Dels=0.00;FS=11.127;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-2.020;QD=19.24;ReadPosRankSum=2.761;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:99:1091,135,0 chrI 7268 . G T 849 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.30;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:882,108,0 chrI 9053 . T G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=119.7487;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=0.14;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,5:126:6:49,6,0 chrI 9473 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=56;Dels=0.00;FS=7.844;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.419;QD=18.86;ReadPosRankSum=2.274;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1089,138,0 chrI 9538 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.77;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1572,195,0 chrI 10202 . A T 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.8500;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.031;QD=15.12;ReadPosRankSum=1.114;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1333,143,0 chrI 10664 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.412;QD=16.96;ReadPosRankSum=1.668;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,53:57:99:1000,120,0 chrI 11045 . A C 1381 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1414,177,0 chrI 11107 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.73;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1513,177,0 chrI 11997 . T A 1327 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.828;DP=163;Dels=0.00;FS=15.663;HaplotypeScore=12.0738;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=52;MQRankSum=1.924;QD=8.14;ReadPosRankSum=3.997;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:7,156:163:99:1360,168,0 chrI 12021 . C G 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;DP=168;Dels=0.00;FS=71.777;HaplotypeScore=10.2963;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=71;MQRankSum=-3.572;QD=0.45;ReadPosRankSum=0.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,40:168:99:105,0,882 chrI 12190 . A G 501 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=25;QD=4.64;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:66:534,66,0 chrI 12195 . T C 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854;DP=99;Dels=0.00;FS=17.339;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=24;MQRankSum=-1.468;QD=2.65;ReadPosRankSum=0.661;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:43,55:99:99:292,0,149 chrI 12216 . C T 530.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;DP=82;Dels=0.00;FS=3.191;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=17;MQRankSum=-0.351;QD=6.47;ReadPosRankSum=0.313;SB=-3.094e+02 GT:AD:DP:GQ:PL 0/1:17,65:82:6:560,0,6 chrI 12227 . C T 669.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.549;DP=86;Dels=0.00;FS=3.962;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=16;MQRankSum=-0.073;QD=7.78;ReadPosRankSum=2.004;SB=-3.572e+02 GT:AD:DP:GQ:PL 1/1:14,72:86:8:701,8,0 chrI 12258 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.097;DP=106;Dels=0.00;FS=4.204;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=2;MQRankSum=2.765;QD=15.30;ReadPosRankSum=2.857;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:6,100:106:99:1655,209,0 chrI 12376 . A G 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DP=174;Dels=0.00;FS=20.201;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=16.39;MQ0=101;MQRankSum=0.094;QD=0.81;ReadPosRankSum=1.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,67:174:99:171,0,524 chrI 12396 . T C 868 filter AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=17.20;MQ0=102;QD=4.67;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,185:186:99:901,114,0 chrI 12420 . C T 341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=210;Dels=0.00;FS=9.847;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=82;MQRankSum=0.207;QD=1.62;ReadPosRankSum=-0.799;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:127,82:210:99:371,0,538 chrI 12449 . C T 463.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.033;DP=196;Dels=0.00;FS=3.784;HaplotypeScore=10.5016;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=39;MQRankSum=-0.494;QD=2.36;ReadPosRankSum=-0.680;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:124,72:196:99:493,0,679 chrI 12477 . A C 486.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=212;Dels=0.00;FS=11.220;HaplotypeScore=29.3711;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=11;MQRankSum=-1.026;QD=2.29;ReadPosRankSum=3.227;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:138,74:212:99:516,0,1022 chrI 12489 . T C 1475.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DP=272;Dels=0.00;FS=72.531;HaplotypeScore=146.1387;MLEAC=1;MLEAF=0.500;MQ=31.46;MQ0=6;MQRankSum=-2.719;QD=5.42;ReadPosRankSum=8.847;SB=-7.280e+02 GT:AD:DP:GQ:PL 0/1:89,180:272:23:1505,0,23 chrI 12498 . A T 1264.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;DP=271;Dels=0.00;FS=62.522;HaplotypeScore=84.4988;MLEAC=1;MLEAF=0.500;MQ=31.47;MQ0=6;MQRankSum=3.730;QD=4.66;ReadPosRankSum=-1.267;SB=-1.024e+03 GT:AD:DP:GQ:PL 0/1:73,197:270:99:1294,0,329 chrI 12523 . G A 81.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DP=259;Dels=0.00;FS=5.991;HaplotypeScore=182.3724;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=1;MQRankSum=-2.338;QD=0.31;ReadPosRankSum=-1.019;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:185,74:259:99:111,0,1468 chrI 12524 . T A 613.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;DP=258;Dels=0.00;FS=84.098;HaplotypeScore=181.5837;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=1;MQRankSum=0.896;QD=2.38;ReadPosRankSum=-1.946;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:109,74:258:99:643,0,577 chrI 12551 . T C 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;DP=206;Dels=0.00;FS=18.169;HaplotypeScore=12.8273;MLEAC=1;MLEAF=0.500;MQ=31.89;MQ0=0;MQRankSum=-1.655;QD=0.38;ReadPosRankSum=-1.039;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:123,79:206:99:109,0,983 chrI 12553 . A G 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;DP=206;Dels=0.00;FS=15.631;HaplotypeScore=12.0386;MLEAC=1;MLEAF=0.500;MQ=31.50;MQ0=0;MQRankSum=-2.249;QD=0.43;ReadPosRankSum=-1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,82:206:99:119,0,972 chrI 12561 . A G 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;DP=181;Dels=0.00;FS=9.132;HaplotypeScore=34.6078;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=-0.946;QD=0.69;ReadPosRankSum=-1.450;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:105,76:181:99:155,0,824 chrI 12566 . C T 935 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=142;Dels=0.00;FS=27.302;HaplotypeScore=48.4300;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;MQRankSum=2.699;QD=6.58;ReadPosRankSum=1.552;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:9,132:142:67:968,67,0 chrI 12570 . C T 881 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.147;DP=113;Dels=0.00;FS=41.298;HaplotypeScore=46.3883;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;MQRankSum=2.674;QD=7.80;ReadPosRankSum=0.167;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:10,103:113:63:914,63,0 chrI 12571 . G A 573.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DP=112;Dels=0.00;FS=24.754;HaplotypeScore=46.3883;MLEAC=1;MLEAF=0.500;MQ=30.31;MQ0=0;MQRankSum=1.768;QD=5.12;ReadPosRankSum=-0.677;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:33,79:112:50:603,0,50 chrI 12594 . A T 236.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DP=67;Dels=0.00;FS=40.782;HaplotypeScore=41.6063;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=3.001;QD=3.52;ReadPosRankSum=-3.949;SB=-3.903e+01 GT:AD:DP:GQ:PL 0/1:12,55:67:23:266,0,23 chrI 12599 . T C 60.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DP=67;Dels=0.00;FS=1.142;HaplotypeScore=13.2576;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=0;MQRankSum=1.964;QD=0.90;ReadPosRankSum=1.362;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:35,32:67:90:90,0,116 chrI 12601 . A G 81.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;DP=68;Dels=0.00;FS=2.590;HaplotypeScore=13.2576;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=0;MQRankSum=1.776;QD=1.19;ReadPosRankSum=-0.094;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:33,35:68:99:111,0,114 chrI 12609 . A G 273.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.002;DP=80;Dels=0.00;FS=8.092;HaplotypeScore=26.5398;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=-0.553;QD=3.41;ReadPosRankSum=2.187;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:26,54:80:68:303,0,68 chrI 12619 . G A 249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DP=95;Dels=0.00;FS=8.068;HaplotypeScore=50.5293;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.926;QD=2.62;ReadPosRankSum=-3.253;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:40,55:95:99:279,0,187 chrI 12620 . T C 236.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090;DP=100;Dels=0.00;FS=9.957;HaplotypeScore=38.1082;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=-1.529;QD=2.36;ReadPosRankSum=-1.004;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:38,61:100:99:266,0,180 chrI 12625 . G A 273.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.832;DP=101;Dels=0.00;FS=3.384;HaplotypeScore=83.9596;MLEAC=1;MLEAF=0.500;MQ=27.44;MQ0=0;MQRankSum=0.379;QD=2.70;ReadPosRankSum=-2.496;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:72,29:101:99:303,0,294 chrI 12632 . G A 125.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=102;Dels=0.00;FS=5.249;HaplotypeScore=16.3281;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=0;MQRankSum=2.442;QD=1.23;ReadPosRankSum=-1.449;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:79,23:102:99:155,0,445 chrI 12647 . T C 491.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.145;DP=115;Dels=0.00;FS=4.914;HaplotypeScore=7.0511;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=0;MQRankSum=1.508;QD=4.27;ReadPosRankSum=3.368;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:29,83:115:99:521,0,117 chrI 12649 . A G 493.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.516;DP=116;Dels=0.00;FS=6.371;HaplotypeScore=5.5539;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=1.793;QD=4.25;ReadPosRankSum=3.583;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:32,84:116:99:523,0,136 chrI 12657 . A G 433.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;DP=120;Dels=0.00;FS=2.821;HaplotypeScore=15.2057;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=0.120;QD=3.61;ReadPosRankSum=2.436;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:40,80:120:99:463,0,231 chrI 12667 . G A 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=107;Dels=0.00;FS=1.758;HaplotypeScore=40.5549;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=-0.309;QD=2.08;ReadPosRankSum=-0.411;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:65,42:107:99:253,0,438 chrI 12673 . G A 65.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DP=106;Dels=0.00;FS=15.703;HaplotypeScore=42.1161;MLEAC=1;MLEAF=0.500;MQ=28.45;MQ0=0;MQRankSum=-0.490;QD=0.61;ReadPosRankSum=-0.130;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:70,36:106:95:95,0,561 chrI 12690 . A T 811 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.338;DP=91;Dels=0.00;FS=2.869;HaplotypeScore=9.1372;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=-1.232;QD=8.91;ReadPosRankSum=1.692;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:844,102,0 chrI 12695 . T C 341.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;DP=97;Dels=0.00;FS=38.990;HaplotypeScore=24.9793;MLEAC=1;MLEAF=0.500;MQ=28.19;MQ0=0;MQRankSum=0.168;QD=3.52;ReadPosRankSum=3.200;SB=-8.796e+01 GT:AD:DP:GQ:PL 0/1:36,61:97:99:371,0,250 chrI 12697 . A G 370.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.399;DP=95;Dels=0.00;FS=50.656;HaplotypeScore=19.0617;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=0;MQRankSum=-0.201;QD=3.89;ReadPosRankSum=1.938;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:32,63:95:99:400,0,249 chrI 12705 . A G 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.448;DP=113;Dels=0.00;FS=3.737;HaplotypeScore=50.9179;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=0.909;QD=1.88;ReadPosRankSum=-2.906;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:77,36:113:99:242,0,587 chrI 12715 . G A 808.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;DP=176;Dels=0.00;FS=0.578;HaplotypeScore=58.0641;MLEAC=1;MLEAF=0.500;MQ=30.09;MQ0=0;MQRankSum=-1.621;QD=4.59;ReadPosRankSum=7.500;SB=-6.030e+02 GT:AD:DP:GQ:PL 0/1:62,114:176:99:838,0,587 chrI 12716 . C T 689.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=182;Dels=0.00;FS=8.887;HaplotypeScore=39.5340;MLEAC=1;MLEAF=0.500;MQ=30.70;MQ0=0;MQRankSum=2.901;QD=3.79;ReadPosRankSum=-8.035;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:100,77:182:99:719,0,656 chrI 12721 . G A 904.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.102;DP=221;Dels=0.00;FS=0.516;HaplotypeScore=62.2246;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=0;MQRankSum=2.497;QD=4.09;ReadPosRankSum=-2.749;SB=-5.320e+02 GT:AD:DP:GQ:PL 0/1:136,84:221:99:934,0,968 chrI 12743 . T C 1362.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740;DP=277;Dels=0.00;FS=2.764;HaplotypeScore=42.5685;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=0;MQRankSum=-5.502;QD=4.92;ReadPosRankSum=-0.147;SB=-1.050e+03 GT:AD:DP:GQ:PL 0/1:97,179:277:99:1392,0,1246 chrI 12745 . A G 1414.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.107;DP=278;Dels=0.00;FS=0.452;HaplotypeScore=42.5685;MLEAC=1;MLEAF=0.500;MQ=32.55;MQ0=0;MQRankSum=-5.615;QD=5.09;ReadPosRankSum=-0.167;SB=-1.033e+03 GT:AD:DP:GQ:PL 0/1:100,178:278:99:1444,0,1313 chrI 12753 . A G 1390.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.336;DP=317;Dels=0.00;FS=16.527;HaplotypeScore=117.6407;MLEAC=1;MLEAF=0.500;MQ=32.03;MQ0=0;MQRankSum=-4.055;QD=4.38;ReadPosRankSum=-7.968;SB=-1.304e+03 GT:AD:DP:GQ:PL 0/1:135,178:317:99:1420,0,1696 chrI 12763 . G A 2060.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.071;DP=340;Dels=0.00;FS=19.202;HaplotypeScore=138.2236;MLEAC=1;MLEAF=0.500;MQ=32.56;MQ0=0;MQRankSum=3.412;QD=6.06;ReadPosRankSum=8.282;SB=-1.303e+03 GT:AD:DP:GQ:PL 0/1:158,182:340:99:2090,0,1275 chrI 12764 . T C 1610.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911;DP=341;Dels=0.00;FS=5.575;HaplotypeScore=96.0348;MLEAC=1;MLEAF=0.500;MQ=32.55;MQ0=0;MQRankSum=0.686;QD=4.72;ReadPosRankSum=6.503;SB=-1.095e+03 GT:AD:DP:GQ:PL 0/1:189,152:341:99:1640,0,1724 chrI 12798 . C T 2511.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.444;DP=364;Dels=0.00;FS=145.319;HaplotypeScore=36.3312;MLEAC=1;MLEAF=0.500;MQ=34.17;MQ0=0;MQRankSum=0.211;QD=6.90;ReadPosRankSum=7.814;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:193,171:364:99:2541,0,1467 chrI 12814 . G C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.518;DP=243;Dels=0.00;FS=73.540;HaplotypeScore=69.7679;MLEAC=1;MLEAF=0.500;MQ=32.67;MQ0=0;MQRankSum=-0.700;QD=0.06;ReadPosRankSum=-8.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,58:243:44:44,0,2809 chrI 13013 . G A 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.152;DP=106;Dels=0.00;FS=5.237;HaplotypeScore=3.5438;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=3;MQRankSum=1.869;QD=15.11;ReadPosRankSum=2.364;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:4,102:106:99:1635,198,0 chrI 13025 . A C 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=32.5043;MLEAC=1;MLEAF=0.500;MQ=31.73;MQ0=5;MQRankSum=-0.780;QD=2.10;ReadPosRankSum=-1.292;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:77,35:112:99:265,0,999 chrI 13069 . A T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.1646;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=4;MQRankSum=-0.327;QD=0.65;ReadPosRankSum=1.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,8:62:70:70,0,382 chrI 13081 . A G 150.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.103;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=52.0904;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=4;MQRankSum=1.355;QD=2.68;ReadPosRankSum=-0.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,27:56:99:180,0,181 chrI 13122 . G A 321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.631;DP=48;Dels=0.00;FS=2.595;HaplotypeScore=8.8804;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=1;MQRankSum=-1.197;QD=6.69;ReadPosRankSum=2.807;SB=-1.876e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:29:354,29,0 chrI 13146 . A G 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DP=65;Dels=0.00;FS=182.096;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=1;MQRankSum=2.671;QD=0.55;ReadPosRankSum=0.128;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,30:65:66:66,0,133 chrI 13147 . G C 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=64;Dels=0.00;FS=176.541;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=1;MQRankSum=1.838;QD=0.55;ReadPosRankSum=-0.162;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:33,30:64:65:65,0,112 chrI 13152 . G A 62.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;DP=68;Dels=0.00;FS=184.784;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=1;MQRankSum=3.402;QD=0.91;ReadPosRankSum=-0.849;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,37:68:86:92,0,86 chrI 13194 . T G 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=1;MQRankSum=-1.656;QD=9.16;ReadPosRankSum=1.694;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:885,114,0 chrI 13231 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DP=89;Dels=0.00;FS=164.391;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=2;MQRankSum=-2.425;QD=0.53;ReadPosRankSum=-2.500;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:72,17:89:77:77,0,1022 chrI 13239 . G A 119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=90;Dels=0.00;FS=191.199;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=31.96;MQ0=2;MQRankSum=-1.527;QD=1.32;ReadPosRankSum=-1.258;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:68,22:90:99:149,0,870 chrI 13244 . G A 925.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;DP=87;Dels=0.00;FS=191.592;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=2;MQRankSum=1.469;QD=10.63;ReadPosRankSum=-0.025;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,64:87:99:955,0,126 chrI 13246 . C G 1369 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=2;QD=16.11;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1402,174,0 chrI 13251 . A G 127.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=87;Dels=0.00;FS=188.832;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=30.64;MQ0=2;MQRankSum=-1.582;QD=1.46;ReadPosRankSum=2.172;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:64,23:87:99:157,0,735 chrI 13252 . G A 165.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;DP=87;Dels=0.00;FS=191.592;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=30.19;MQ0=2;MQRankSum=-1.795;QD=1.90;ReadPosRankSum=2.607;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:64,23:87:99:195,0,790 chrI 13260 . A G 182.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;DP=92;Dels=0.00;FS=226.713;HaplotypeScore=25.3363;MLEAC=1;MLEAF=0.500;MQ=29.38;MQ0=2;MQRankSum=-0.526;QD=1.98;ReadPosRankSum=1.552;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:60,32:92:99:212,0,518 chrI 13263 . G A 205.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=91;Dels=0.00;FS=163.576;HaplotypeScore=25.3363;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=2;MQRankSum=-0.032;QD=2.25;ReadPosRankSum=4.055;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:65,26:91:99:235,0,560 chrI 13269 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DP=87;Dels=0.00;FS=106.705;HaplotypeScore=37.2185;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=2;MQRankSum=0.678;QD=0.55;ReadPosRankSum=0.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,21:87:78:78,0,578 chrI 13278 . T C 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.719;DP=84;Dels=0.00;FS=105.369;HaplotypeScore=35.4905;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=2;MQRankSum=-1.083;QD=1.06;ReadPosRankSum=0.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,22:84:99:119,0,487 chrI 13279 . T A 103.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;DP=84;Dels=0.00;FS=105.369;HaplotypeScore=35.4905;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=2;MQRankSum=-0.623;QD=1.23;ReadPosRankSum=0.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,22:84:99:133,0,493 chrI 13280 . G A 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.710;DP=84;Dels=0.00;FS=105.369;HaplotypeScore=35.4905;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=2;MQRankSum=-1.680;QD=1.12;ReadPosRankSum=0.340;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,22:84:99:124,0,482 chrI 13281 . A G 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DP=85;Dels=0.00;FS=70.120;HaplotypeScore=35.4905;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=2;MQRankSum=-0.989;QD=1.00;ReadPosRankSum=1.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,16:85:99:115,0,530 chrI 13284 . A G 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.329;DP=86;Dels=0.00;FS=48.137;HaplotypeScore=47.2721;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=1;MQRankSum=-0.720;QD=0.83;ReadPosRankSum=1.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,13:86:99:101,0,446 chrI 13287 . A G 271.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;DP=86;Dels=0.00;FS=168.775;HaplotypeScore=46.2933;MLEAC=1;MLEAF=0.500;MQ=28.98;MQ0=1;MQRankSum=-0.412;QD=3.15;ReadPosRankSum=1.145;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:53,33:86:99:301,0,187 chrI 13290 . G A,T 460.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8870;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.42;MQ0=1;QD=5.68;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/2:0,57,24:81:99:520,201,156,319,0,292 chrI 13293 . A G 102.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.964;DP=80;Dels=0.00;FS=229.348;HaplotypeScore=50.3869;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=0;MQRankSum=-0.840;QD=1.28;ReadPosRankSum=0.502;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:37,43:80:99:132,0,348 chrI 13298 . C T 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.174;DP=71;Dels=0.00;FS=82.093;HaplotypeScore=37.4811;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=0.236;QD=1.94;ReadPosRankSum=0.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,20:71:99:168,0,227 chrI 13299 . A G 262.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=69;Dels=0.00;FS=42.062;HaplotypeScore=37.4811;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=0;MQRankSum=1.243;QD=3.80;ReadPosRankSum=2.272;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:12,57:69:86:292,0,86 chrI 13302 . A G 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;DP=68;Dels=0.00;FS=163.538;HaplotypeScore=31.9489;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=0;MQRankSum=0.522;QD=0.74;ReadPosRankSum=1.591;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,36:68:80:80,0,305 chrI 13308 . C T 231.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.317;DP=62;Dels=0.00;FS=176.541;HaplotypeScore=28.2182;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=-0.444;QD=3.73;ReadPosRankSum=-2.937;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,30:62:51:261,0,51 chrI 13317 . A T 148.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.717;DP=54;Dels=0.00;FS=126.351;HaplotypeScore=20.3718;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-0.844;QD=2.74;ReadPosRankSum=-1.036;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:30,24:54:99:178,0,108 chrI 13320 . C A 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=55;Dels=0.04;FS=134.937;HaplotypeScore=28.2181;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=-1.796;QD=2.27;ReadPosRankSum=-1.027;SB=-3.003e+00 GT:AD:DP:GQ:PL 0/1:29,24:53:99:155,0,103 chrI 13323 . A T 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=71;Dels=0.03;FS=114.935;HaplotypeScore=25.5393;MLEAC=1;MLEAF=0.500;MQ=31.14;MQ0=0;MQRankSum=-1.992;QD=0.97;ReadPosRankSum=1.595;SB=0.631 GT:AD:DP:GQ:PL 0/1:52,14:69:97:99,0,97 chrI 13413 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=1;QD=15.81;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1092,138,0 chrI 13420 . A G 1042 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=15.10;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1075,135,0 chrI 13442 . A C 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=1.607;QD=16.39;ReadPosRankSum=1.523;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1410,174,0 chrI 13616 . G T 1914 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=18.23;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1947,231,0 chrI 13654 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=34.15;MQ0=3;QD=17.81;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1369,165,0 chrI 13798 . A T 1208 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8907;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;QD=18.03;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1241,150,0 chrI 13807 . T G 1154 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=18.61;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1187,147,0 chrI 13830 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=17.89;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1214,153,0 chrI 13848 . A G 1124 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=17.03;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1157,147,0 chrI 13872 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=3;QD=14.11;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:894,111,0 chrI 13942 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=3;QD=18.47;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1529,189,0 chrI 13965 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=1;QD=17.01;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1377,168,0 chrI 14002 . G A 458 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=1;QD=9.54;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:491,60,0 chrI 14012 . T C 387 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=22.2572;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=9.67;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:51:420,51,0 chrI 14050 . T C 254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=3.274;HaplotypeScore=27.7583;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=0;MQRankSum=0.917;QD=7.47;ReadPosRankSum=1.631;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:36:287,36,0 chrI 14062 . T C 482 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=13.39;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:515,63,0 chrI 14100 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=14.47;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:742,90,0 chrI 14195 . A T 520 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=13.33;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:553,66,0 chrI 14196 . A G 501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=8.016;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-0.638;QD=12.85;ReadPosRankSum=1.641;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,37:39:66:534,66,0 chrI 14207 . T C 485 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;QD=10.78;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:518,63,0 chrI 14221 . C T 496 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=1;QD=11.02;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:529,63,0 chrI 14262 . C T 844 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=1;QD=14.55;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:877,108,0 chrI 14312 . C G 1055 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=16.48;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1088,135,0 chrI 14314 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=17.08;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1109,135,0 chrI 14343 . A G 603 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=13.40;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:636,78,0 chrI 14385 . T C 85.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=3.88;SB=-4.327e+01 GT:AD:DP:GQ:PL 1/1:0,20:22:15:118,15,0 chrI 14395 . A C 37.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=3.16;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:70,9,0 chrI 14405 . G A 67.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=4.50;SB=-7.851e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:100,12,0 chrI 14420 . C A 163.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=8.15;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:196,24,0 chrI 14478 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=18.73;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1082,135,0 chrI 14634 . C T 783 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=15.98;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:816,99,0 chrI 14667 . T C 308 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=9.94;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:42:341,42,0 chrI 14723 . T C 585 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=17.73;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:618,75,0 chrI 14888 . C T 700 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=13.46;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:733,87,0 chrI 15045 . T C 184.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=10.22;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:217,27,0 chrI 15054 . G A 236 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=12.42;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:269,33,0 chrI 15098 . A C 517 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=17.83;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:550,69,0 chrI 15426 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=21.49;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1086,129,0 chrI 15475 . T C 773 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=15.46;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:806,102,0 chrI 15477 . C A 696 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=14.50;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:729,90,0 chrI 15502 . T A 567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=0;MQRankSum=-1.611;QD=9.78;ReadPosRankSum=1.672;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:72:600,72,0 chrI 15504 . A T 604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;MQRankSum=-0.734;QD=10.24;ReadPosRankSum=1.556;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:75:637,75,0 chrI 15615 . T A 937 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=16.44;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:970,117,0 chrI 15673 . A G 716 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=16.65;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:749,93,0 chrI 15730 . C T 640 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=14.55;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:673,78,0 chrI 15772 . C T 727 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=1;QD=14.84;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:760,93,0 chrI 15871 . T A 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.484;DP=58;Dels=0.00;FS=9.509;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-0.876;QD=17.03;ReadPosRankSum=2.877;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:99:1021,120,0 chrI 15921 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.32;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1129,135,0 chrI 16046 . T C 290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;MQRankSum=-1.372;QD=6.04;ReadPosRankSum=1.227;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:39:323,39,0 chrI 16098 . A T 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.631;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;MQRankSum=0.142;QD=15.16;ReadPosRankSum=1.675;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:958,114,0 chrI 16196 . A G 1471 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=20.72;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1504,189,0 chrI 16261 . T G 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.009;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2556;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=1.234;QD=17.51;ReadPosRankSum=2.815;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:4,60:65:99:1171,144,0 chrI 16264 . A T 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=64;Dels=0.03;FS=3.063;HaplotypeScore=3.9063;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=1.454;QD=16.55;ReadPosRankSum=2.291;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1092,135,0 chrI 16448 . T A 1384 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=18.45;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1417,171,0 chrI 16480 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=18.85;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1503,183,0 chrI 16527 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=18.08;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1136,138,0 chrI 16552 . A C 775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;MQRankSum=-1.333;QD=14.62;ReadPosRankSum=1.532;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:808,102,0 chrI 16580 . A G 808 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=16.83;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:841,102,0 chrI 16595 . C A 523 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=13.07;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:556,66,0 chrI 16605 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=15.03;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:66:559,66,0 chrI 16659 . C T 491 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=12.27;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:524,66,0 chrI 16668 . G A 688 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=16.00;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:87:721,87,0 chrI 16699 . A C 1093 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=2;QD=15.84;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1126,135,0 chrI 16775 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=11.44;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1005,120,0 chrI 16783 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=2;QD=10.78;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:917,111,0 chrI 16789 . A C 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=75;Dels=0.00;FS=2.932;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.78;MQ0=1;MQRankSum=-0.355;QD=11.12;ReadPosRankSum=2.382;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:867,105,0 chrI 16807 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=1;QD=10.24;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:87:709,87,0 chrI 16848 . T C 206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=1;MQRankSum=-0.421;QD=5.42;ReadPosRankSum=1.639;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:30:239,30,0 chrI 16917 . G T 163.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=14.82;SB=-4.702e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:196,24,0 chrI 16952 . T C 66.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=9.50;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:99,12,0 chrI 17023 . C T 111.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=0;QD=18.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:144,18,0 chrI 17032 . T C 189.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=-0.791;QD=17.18;ReadPosRankSum=1.107;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:27:222,27,0 chrI 17048 . T C 231 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=13.59;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:33:264,33,0 chrI 17092 . A G 614 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=12.79;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:78:647,78,0 chrI 17163 . G A 447 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=1;QD=17.88;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:480,57,0 chrI 17188 . T C 159.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=1;MQRankSum=1.775;QD=9.94;ReadPosRankSum=2.451;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:3,11:16:24:192,24,0 chrI 17213 . A G 183.01 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=12.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:216,27,0 chrI 17214 . T C 190.01 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=12.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:223,27,0 chrI 17220 . T C 65.45 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.26;MQ0=0;QD=4.67;SB=-9.422e-01 GT:AD:DP:GQ:PL 1/1:0,10:14:12:96,12,0 chrI 17265 . T C 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.315;QD=14.70;ReadPosRankSum=1.680;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1003,126,0 chrI 17347 . T A 519 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=4;MQRankSum=-0.979;QD=10.38;ReadPosRankSum=1.506;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:66:552,66,0 chrI 17350 . T G 455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=49;Dels=0.00;FS=2.755;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=4;MQRankSum=0.083;QD=9.29;ReadPosRankSum=0.964;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:60:488,60,0 chrI 17493 . T A 851 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=19.79;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:884,105,0 chrI 17511 . A C 751 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;QD=18.77;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:784,99,0 chrI 17519 . A G 677 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=19.34;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:710,90,0 chrI 17557 . G A 685 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=17.56;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:718,87,0 chrI 17607 . T C 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=3.039;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=0.788;QD=17.32;ReadPosRankSum=2.322;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,56:59:99:1055,132,0 chrI 17651 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=18.34;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1867,222,0 chrI 17708 . A G 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7173;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=1;MQRankSum=1.575;QD=14.24;ReadPosRankSum=1.653;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1300,159,0 chrI 17739 . C T 734 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=1;QD=14.12;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:767,90,0 chrI 17753 . T A 627 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=1;QD=13.06;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:660,78,0 chrI 17772 . T A 417 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=1;QD=11.58;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:450,54,0 chrI 17910 . T C 200 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=1;QD=9.52;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:233,30,0 chrI 17914 . G A 233 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=10.59;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:266,33,0 chrI 17929 . G A 292 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=13.90;SB=-7.608e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:39:325,39,0 chrI 17938 . G C 250 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=11.36;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:36:283,36,0 chrI 18005 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=16.85;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1229,156,0 chrI 18058 . A G 1317 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.81;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1350,168,0 chrI 18105 . G T 863 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=15.41;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:896,111,0 chrI 18113 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=13.78;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:832,99,0 chrI 18172 . A G 248 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=21.6829;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.54;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:36:281,36,0 chrI 18264 . A G 254 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;QD=11.04;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:287,36,0 chrI 18377 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6746;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=1;QD=19.98;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1292,153,0 chrI 18413 . C G 1164 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=16.17;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1197,153,0 chrI 18425 . T C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=0.480;QD=15.47;ReadPosRankSum=1.690;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1317,165,0 chrI 18457 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=14.18;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1309,159,0 chrI 18498 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=15.24;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1176,144,0 chrI 18505 . A T 1130 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=15.92;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1163,144,0 chrI 18517 . T A 1041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=69;Dels=0.00;FS=2.938;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;MQRankSum=-1.579;QD=15.09;ReadPosRankSum=2.377;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1074,132,0 chrI 18553 . C T 708 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=12.64;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:93:741,93,0 chrI 18562 . A G 560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=7.984;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;MQRankSum=-1.181;QD=12.44;ReadPosRankSum=1.654;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:75:593,75,0 chrI 18574 . T G 764 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.92;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:797,99,0 chrI 18677 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=2;QD=18.63;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1132,135,0 chrI 18723 . G T 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=4.921;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=1;MQRankSum=0.499;QD=17.12;ReadPosRankSum=1.145;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1060,126,0 chrI 18724 . A G 911 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=1;QD=14.69;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:944,117,0 chrI 18876 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=1;QD=12.00;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:78:645,78,0 chrI 18877 . T G 554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.309;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=35.41;MQ0=1;MQRankSum=-0.547;QD=10.45;ReadPosRankSum=2.022;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:2,51:53:56:587,56,0 chrI 18890 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=1;QD=13.48;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:96:788,96,0 chrI 19040 . C A 387 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=19.14;MQ0=8;QD=9.67;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:420,51,0 chrI 19066 . A T 187.01 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=3;QD=7.79;SB=-9.499e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:27:220,27,0 chrI 19099 . A G 261 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=18.6258;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=12.43;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:294,36,0 chrI 19128 . G A 405 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=10.12;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:54:438,54,0 chrI 19196 . A T 736 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=3;QD=16.36;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:93:769,93,0 chrI 19215 . C T 770 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=3;QD=15.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:96:803,96,0 chrI 19284 . T C 795 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=12;QD=13.95;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:828,105,0 chrI 19333 . A G 1012 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=7;QD=14.88;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1045,129,0 chrI 19354 . A G 726 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=10;QD=12.52;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:759,93,0 chrI 19423 . G A 923 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=4;QD=19.64;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:956,114,0 chrI 19436 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=20.60;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1063,132,0 chrI 19520 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=2;QD=18.34;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1427,177,0 chrI 19586 . C T 612 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=7;QD=13.91;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:78:645,78,0 chrI 19694 . T C 603 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=11;QD=10.40;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:78:636,78,0 chrI 19750 . T A 476 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=4;QD=10.13;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:60:509,60,0 chrI 19751 . G T 491 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=4;QD=10.67;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:63:524,63,0 chrI 19812 . A G 140.06 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.67;SB=-4.607e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:173,21,0 chrI 19865 . C T 263 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=7.74;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:296,36,0 chrI 19866 . G A 295 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=8.68;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:39:328,39,0 chrI 19869 . T C 285 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=5.898;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;MQRankSum=0.941;QD=8.14;ReadPosRankSum=1.634;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:39:318,39,0 chrI 19895 . C T 237 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=9.88;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:270,33,0 chrI 19917 . T G 223 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=10.62;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:33:256,33,0 chrI 19933 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.85;SB=-7.147e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:73,9,0 chrI 19934 . A G 38.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.57;SB=-7.147e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:71,9,0 chrI 19958 . T C 63.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=9.07;SB=-4.526e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:96,12,0 chrI 20008 . T C 442 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=1;QD=14.73;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:475,60,0 chrI 20236 . A G 449 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=1;QD=20.41;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:482,60,0 chrI 20267 . G A 210 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=15.00;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:243,30,0 chrI 20315 . G A 146.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=12.17;SB=-7.604e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:179,21,0 chrI 20326 . C T 93.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=9.33;SB=-2.520e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:126,15,0 chrI 20393 . T A 95.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=9.53;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:128,15,0 chrI 20405 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=6.95;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:95,12,0 chrI 20406 . A G 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=7.50;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:100,12,0 chrI 20407 . C A 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=7.61;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:101,12,0 chrI 20415 . C T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=1;QD=3.80;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:70,9,0 chrI 20426 . T A 40.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=1;QD=4.55;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:73,9,0 chrI 20428 . A G 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=1;MQRankSum=0.747;QD=4.33;ReadPosRankSum=0.747;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:9:71,9,0 chrI 20551 . T C 327 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=2;QD=13.08;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:360,45,0 chrI 20572 . C T 298 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=1;QD=14.19;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:39:331,39,0 chrI 20582 . A G 312 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=1;QD=13.00;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:345,42,0 chrI 20646 . A G 138.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=12.55;SB=-4.706e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:171,21,0 chrI 20684 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.93;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:102,12,0 chrI 20954 . T G 404 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=14.43;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:437,54,0 chrI 21017 . T C 163.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.38;SB=-2.497e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:196,24,0 chrI 21058 . C T 114.13 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=16.30;SB=-6.817e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:147,18,0 chrI 21145 . G A 244 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=16.27;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:277,33,0 chrI 21181 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=1.13;SB=-7.326e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:47,6,0 chrI 21183 . A C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=0;QD=1.27;SB=-5.280e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrI 21221 . A G 306 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=11.33;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:339,42,0 chrI 21278 . A G 676 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=2;QD=18.78;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:87:709,87,0 chrI 21346 . T C 722 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=4;QD=14.44;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:93:755,93,0 chrI 21394 . A G 260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=26;Dels=0.00;FS=5.351;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=2;MQRankSum=-0.722;QD=10.00;ReadPosRankSum=1.300;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:36:293,36,0 chrI 21411 . T A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=3.73;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:4:6:46,6,0 chrI 21412 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=3.97;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrI 21460 . A G 394 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=15.15;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:427,51,0 chrI 21485 . T A 841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=0.405;QD=17.89;ReadPosRankSum=1.659;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:874,105,0 chrI 21541 . T A 951 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=16.68;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:984,117,0 chrI 21572 . C G 454 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=1;QD=13.35;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:60:487,60,0 chrI 21573 . C T 452 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=1;QD=14.12;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:485,57,0 chrI 21593 . C G 165.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=3;QD=7.86;SB=-2.404e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:24:198,24,0 chrI 21596 . G C 115.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=3;QD=5.76;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:148,18,0 chrI 21745 . A T 242 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;QD=20.17;SB=-4.600e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:275,33,0 chrI 21746 . A G 232 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;QD=17.85;SB=-4.500e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:265,33,0 chrI 21758 . T C 325 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=1;QD=18.06;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:45:358,45,0 chrI 21781 . C T 262 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=1;QD=14.56;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,17:18:36:295,36,0 chrI 21806 . C T 259 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=1;QD=14.39;SB=-1.689e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:36:292,36,0 chrI 21829 . A C 304 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=3;QD=13.22;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:42:337,42,0 chrI 21853 . C T 294 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=4;QD=9.48;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:327,39,0 chrI 21854 . G C 287 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=4;QD=9.57;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:39:320,39,0 chrI 21896 . A G 227 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=6;MQRankSum=-0.158;QD=8.11;ReadPosRankSum=1.576;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:33:260,33,0 chrI 21960 . T C 110.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=1;QD=7.34;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:143,18,0 chrI 22065 . T C 934 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=5;QD=17.96;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:967,120,0 chrI 22181 . C G 1430 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=2;QD=18.57;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1463,180,0 chrI 22197 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=1;QD=18.20;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1416,168,0 chrI 22254 . G T 333 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=1;QD=8.54;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:366,45,0 chrI 22267 . A G 251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=33;Dels=0.00;FS=8.893;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=2;MQRankSum=0.391;QD=7.61;ReadPosRankSum=1.621;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:36:284,36,0 chrI 22278 . T C 253 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=2;QD=9.04;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:36:286,36,0 chrI 22293 . G A 310 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=2;QD=8.86;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:42:343,42,0 chrI 22321 . G A 181.01 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=1;QD=5.03;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:27:214,27,0 chrI 22337 . C T 707 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=1;QD=12.40;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:740,93,0 chrI 22373 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=15.90;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1528,186,0 chrI 22528 . T C 1287 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=17.63;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1320,165,0 chrI 22758 . A G 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.985;QD=15.39;ReadPosRankSum=2.359;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:864,108,0 chrI 23066 . G C 282 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=11.75;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:39:315,39,0 chrI 23121 . C T 384 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=1;QD=16.70;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:417,51,0 chrI 23408 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=2;QD=3.82;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:74,9,0 chrI 23416 . A G 63.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=3;QD=4.54;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:96,12,0 chrI 23433 . T C 70.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=3;QD=4.70;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:103,12,0 chrI 23467 . A G 134.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=2;QD=7.06;SB=-2.407e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:167,21,0 chrI 23813 . A C 752 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=20.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:36:99:785,99,0 chrI 23843 . T C 519 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.00;MQ0=4;MQRankSum=1.600;QD=17.30;ReadPosRankSum=1.600;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,27:30:69:552,69,0 chrI 23862 . A T 219 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=5;QD=10.95;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:252,30,0 chrI 23865 . G A 223 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=5;QD=11.15;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:256,30,0 chrI 23895 . T C 87.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=7;QD=5.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:15:120,15,0 chrI 23910 . T A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.53;MQ0=8;QD=1.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:6:44,6,0 chrI 24346 . C A 60.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DP=43;Dels=0.00;FS=2.644;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.19;MQ0=18;MQRankSum=1.279;QD=1.41;ReadPosRankSum=1.208;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:19,24:43:12:93,12,0 chrI 24401 . G C 264 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.45;MQ0=6;QD=9.10;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:36:297,36,0 chrI 24431 . A G 256 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=34;Dels=0.00;FS=9.853;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=4;MQRankSum=0.042;QD=7.53;ReadPosRankSum=2.203;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:36:289,36,0 chrI 24453 . C G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;DP=25;Dels=0.00;FS=25.660;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=2;MQRankSum=2.078;QD=1.00;ReadPosRankSum=-0.527;SB=-6.253e-03 GT:AD:DP:GQ:PL 0/1:15,10:25:55:55,0,55 chrI 24491 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=3;QD=1.11;SB=-4.871e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:6:49,6,0 chrI 24514 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.59;MQ0=8;QD=1.11;SB=-5.164e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:6:50,6,0 chrI 24648 . C T 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;DP=86;Dels=0.00;FS=29.303;HaplotypeScore=6.2293;MLEAC=1;MLEAF=0.500;MQ=13.47;MQ0=16;MQRankSum=-1.453;QD=0.55;ReadPosRankSum=-0.091;SB=-3.001e+00 GT:AD:DP:GQ:PL 0/1:49,37:86:31:77,0,31 chrI 24659 . C T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;DP=107;Dels=0.00;FS=44.162;HaplotypeScore=9.1797;MLEAC=1;MLEAF=0.500;MQ=16.22;MQ0=16;MQRankSum=-3.080;QD=0.43;ReadPosRankSum=-1.168;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,42:107:76:76,0,152 chrI 24690 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.393;DP=100;Dels=0.00;FS=42.531;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.34;MQ0=2;MQRankSum=-2.979;QD=0.37;ReadPosRankSum=-0.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,32:100:67:67,0,218 chrI 24748 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.381;DP=39;Dels=0.00;FS=19.651;HaplotypeScore=29.1122;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=10;MQRankSum=3.092;QD=0.97;ReadPosRankSum=-1.820;SB=2.14 GT:AD:DP:GQ:PL 1/1:25,14:39:9:70,9,0 chrI 24753 . C T 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.714;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=8.1488;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=11;MQRankSum=-1.123;QD=0.53;ReadPosRankSum=-1.735;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:11,17:28:6:46,6,0 chrI 24756 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=7.1275;MLEAC=2;MLEAF=1.00;MQ=13.00;MQ0=11;MQRankSum=0.347;QD=0.57;ReadPosRankSum=-1.736;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:11,15:28:6:47,6,0 chrI 24814 . G A 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DP=88;Dels=0.00;FS=46.482;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=18.65;MQ0=32;MQRankSum=-1.017;QD=1.09;ReadPosRankSum=-4.711;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:65,23:88:99:126,0,190 chrI 24816 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.822;DP=88;Dels=0.00;FS=47.270;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=30;MQRankSum=-0.521;QD=0.90;ReadPosRankSum=-4.409;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:63,24:88:99:109,0,224 chrI 24829 . A G 202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.715;DP=96;Dels=0.00;FS=21.431;HaplotypeScore=6.4149;MLEAC=1;MLEAF=0.500;MQ=18.95;MQ0=30;MQRankSum=0.887;QD=2.10;ReadPosRankSum=0.951;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:51,45:96:99:232,0,290 chrI 24861 . A G 316 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.932;DP=57;Dels=0.00;FS=60.341;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.12;MQ0=32;MQRankSum=-2.359;QD=5.54;ReadPosRankSum=3.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,49:57:45:349,45,0 chrI 24873 . C T 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.70;MQ0=32;MQRankSum=-2.202;QD=1.80;ReadPosRankSum=0.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,20:46:99:113,0,105 chrI 24902 . C T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=12;MQRankSum=-1.448;QD=3.19;ReadPosRankSum=-0.772;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,11:27:83:116,0,83 chrI 24966 . A G 325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.439;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=27.4547;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=0;MQRankSum=0.182;QD=2.80;ReadPosRankSum=0.802;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:2,113:116:45:358,45,0 chrI 25037 . T C 675 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=2;QD=11.25;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:90:708,90,0 chrI 25070 . C T 685 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=5;QD=13.43;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:718,87,0 chrI 25142 . G A 145.06 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=4;QD=5.58;SB=-5.181e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:21:178,21,0 chrI 25178 . G A 145.06 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=10;QD=6.59;SB=-7.756e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:21:178,21,0 chrI 25418 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:71,9,0 chrI 25431 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=6;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;MQRankSum=1.380;QD=2.65;ReadPosRankSum=1.380;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:6:6:47,6,0 chrI 26761 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=9;QD=0.83;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:9,15:24:6:51,6,0 chrI 26765 . T C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=10;QD=1.60;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:10,15:25:9:72,9,0 chrI 26766 . G A 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=10;QD=1.68;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:10,15:25:9:74,9,0 chrI 26778 . C T 42.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=12;QD=1.02;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:9:75,9,0 chrI 26790 . C T 42.97 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=12;QD=0.98;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:12,32:44:9:75,9,0 chrI 26835 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=4;QD=1.53;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:75,9,0 chrI 26970 . G A 101.46 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=2;MQRankSum=1.805;QD=3.50;ReadPosRankSum=1.528;SB=-4.469e+00 GT:AD:DP:GQ:PL 0/1:4,25:29:1:130,0,1 chrI 26973 . A G 106.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.963;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=4;MQRankSum=-0.064;QD=3.42;ReadPosRankSum=-0.963;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:4,26:31:18:139,18,0 chrI 26974 . A G 112.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=4;MQRankSum=1.898;QD=3.63;ReadPosRankSum=2.268;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:6,25:31:2:142,2,0 chrI 26981 . T C 135.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=4;QD=4.22;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,30:32:21:168,21,0 chrI 26982 . G A 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=4;QD=4.35;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,28:32:21:172,21,0 chrI 26983 . T G 139.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=5;QD=4.21;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,29:33:21:172,21,0 chrI 27000 . A G 179.01 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=7;QD=3.89;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:6,40:46:27:212,27,0 chrI 27027 . A T 138.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=5;QD=3.29;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:21:171,21,0 chrI 27031 . C T 114.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=5;QD=2.78;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:5,36:41:18:147,18,0 chrI 27035 . T C 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=4;QD=3.85;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,30:34:21:164,21,0 chrI 27036 . G A 145.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=4;QD=4.27;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,30:34:21:178,21,0 chrI 27044 . C T 119.13 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=1;QD=3.40;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:152,18,0 chrI 27051 . G A 74.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=1;MQRankSum=2.643;QD=2.26;ReadPosRankSum=-0.415;SB=-5.203e-01 GT:AD:DP:GQ:PL 0/1:18,15:33:6:104,0,6 chrI 27060 . A T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=1;QD=0.77;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,21:22:6:48,6,0 chrI 27062 . C A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=1.485;QD=0.90;ReadPosRankSum=-0.978;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,8:21:6:50,6,0 chrI 27063 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;QD=1.04;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:53,6,0 chrI 27066 . G A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=1.340;QD=0.99;ReadPosRankSum=-1.557;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,8:21:6:52,6,0 chrI 27186 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=6.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrI 27188 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.62;MQ0=0;QD=6.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrI 27195 . T G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=10;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=0;MQRankSum=-1.741;QD=3.30;ReadPosRankSum=1.393;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:65,9,0 chrI 27210 . A G 266 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.2758;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=9.85;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,25:27:39:299,39,0 chrI 27290 . C A 2268 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=19.72;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2301,273,0 chrI 27330 . A C 967 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=0;QD=13.43;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:72:99:1000,129,0 chrI 27356 . T C 424 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=44;Dels=0.00;FS=6.140;HaplotypeScore=15.0816;MLEAC=2;MLEAF=1.00;MQ=16.45;MQ0=5;MQRankSum=-1.639;QD=9.64;ReadPosRankSum=1.545;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,41:44:63:457,63,0 chrI 27357 . A G 359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.171;DP=42;Dels=0.00;FS=22.860;HaplotypeScore=14.2929;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=5;MQRankSum=4.656;QD=8.55;ReadPosRankSum=1.129;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:15,27:42:54:392,54,0 chrI 27370 . G A 292 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=44;Dels=0.00;FS=29.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.75;MQ0=6;MQRankSum=2.554;QD=6.64;ReadPosRankSum=-0.862;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:13,31:44:45:325,45,0 chrI 27380 . T G 314 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=6;MQRankSum=-1.502;QD=5.71;ReadPosRankSum=1.617;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,35:55:48:347,48,0 chrI 27476 . G A 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.358;DP=9;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.18;MQ0=4;MQRankSum=1.231;QD=4.55;ReadPosRankSum=0.358;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:9:73,9,0 chrI 27486 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=4;MQRankSum=0.736;QD=1.88;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,5:10:6:50,6,0 chrI 27489 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=6;MQRankSum=0.742;QD=1.45;ReadPosRankSum=-0.742;SB=-5.126e+01 GT:AD:DP:GQ:PL 1/1:7,6:13:6:50,6,0 chrI 27492 . A T 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=8;MQRankSum=1.470;QD=0.66;ReadPosRankSum=-1.737;SB=-4.626e+01 GT:AD:DP:GQ:PL 1/1:9,12:21:6:45,6,0 chrI 27498 . A T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=10;MQRankSum=1.531;QD=1.48;ReadPosRankSum=-1.531;SB=-7.698e+01 GT:AD:DP:GQ:PL 1/1:11,16:27:9:72,9,0 chrI 27504 . C A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=12;MQRankSum=1.531;QD=1.31;ReadPosRankSum=-1.327;SB=-7.398e+01 GT:AD:DP:GQ:PL 1/1:13,16:29:9:70,9,0 chrI 27505 . T G 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=12;MQRankSum=1.531;QD=1.38;ReadPosRankSum=-1.327;SB=-7.498e+01 GT:AD:DP:GQ:PL 1/1:13,16:29:9:72,9,0 chrI 27506 . T A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.714;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=12;MQRankSum=1.531;QD=1.34;ReadPosRankSum=-1.327;SB=-7.598e+01 GT:AD:DP:GQ:PL 1/1:13,16:29:9:71,9,0 chrI 27507 . G A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=13;MQRankSum=1.531;QD=1.27;ReadPosRankSum=-1.327;SB=-7.498e+01 GT:AD:DP:GQ:PL 1/1:14,16:30:9:70,9,0 chrI 27510 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.040;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=13;MQRankSum=0.281;QD=0.84;ReadPosRankSum=0.442;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:15,29:44:9:69,9,0 chrI 27522 . C T 115.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;DP=57;Dels=0.00;FS=3.192;HaplotypeScore=3.4424;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=17;MQRankSum=2.327;QD=2.02;ReadPosRankSum=1.893;SB=-2.651e+02 GT:AD:DP:GQ:PL 1/1:19,38:57:18:148,18,0 chrI 27540 . A G 156.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;DP=62;Dels=0.00;FS=5.740;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=17;MQRankSum=1.655;QD=2.52;ReadPosRankSum=1.039;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:18,44:62:24:189,24,0 chrI 27561 . T G 229 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=70;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=16;MQRankSum=1.668;QD=3.27;ReadPosRankSum=-1.155;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:17,53:70:33:262,33,0 chrI 27563 . C T 271 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=70;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=16;MQRankSum=1.668;QD=3.87;ReadPosRankSum=-1.219;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:17,53:70:36:304,36,0 chrI 27573 . G A 285 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=70;Dels=0.00;FS=4.694;HaplotypeScore=4.6369;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=14;MQRankSum=1.670;QD=4.07;ReadPosRankSum=-1.732;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:15,55:70:39:318,39,0 chrI 27576 . A G 250 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;DP=69;Dels=0.00;FS=4.616;HaplotypeScore=4.6369;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=13;MQRankSum=1.669;QD=3.62;ReadPosRankSum=-1.732;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:14,54:69:36:283,36,0 chrI 27582 . G A 399 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DP=74;Dels=0.00;FS=3.680;HaplotypeScore=5.5528;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=11;MQRankSum=1.677;QD=5.39;ReadPosRankSum=-1.732;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:12,62:74:51:432,51,0 chrI 27585 . A G 431 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.108;DP=74;Dels=0.00;FS=3.438;HaplotypeScore=6.3849;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=10;MQRankSum=1.678;QD=5.82;ReadPosRankSum=-1.732;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:11,63:74:57:464,57,0 chrI 27591 . T C 478 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9889;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=7;MQRankSum=2.151;QD=7.03;ReadPosRankSum=0.951;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:10,58:68:63:511,63,0 chrI 27593 . A G 482 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.126;DP=68;Dels=0.00;FS=7.853;HaplotypeScore=3.6373;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=7;MQRankSum=2.288;QD=7.09;ReadPosRankSum=-1.762;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:9,59:68:63:515,63,0 chrI 27597 . A T 537 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=65;Dels=0.00;FS=3.802;HaplotypeScore=3.6373;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=5;MQRankSum=1.675;QD=8.26;ReadPosRankSum=-1.097;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:6,59:65:69:570,69,0 chrI 27611 . C A 523 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=53;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=2;MQRankSum=1.664;QD=9.87;ReadPosRankSum=0.306;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:66:556,66,0 chrI 27614 . T C 321 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=1.621;QD=10.35;ReadPosRankSum=1.621;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:45:354,45,0 chrI 27616 . A G 309 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=1.621;QD=9.97;ReadPosRankSum=1.621;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:42:342,42,0 chrI 27617 . T C 326 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.87;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:359,45,0 chrI 27619 . G T 351 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=11.70;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:384,45,0 chrI 27622 . T C 331 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=11.03;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:364,45,0 chrI 27624 . A G 331 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=11.03;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:364,45,0 chrI 27627 . A G 329 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.97;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:362,45,0 chrI 27630 . A G 329 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.97;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:362,45,0 chrI 27646 . T C 378 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=29.3331;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=5.32;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:51:411,51,0 chrI 27667 . A G 373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;MQRankSum=0.107;QD=4.60;ReadPosRankSum=2.389;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:51:406,51,0 chrI 27668 . A C 376 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=1;QD=4.70;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:51:409,51,0 chrI 27681 . A G 232 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.741;DP=75;Dels=0.00;FS=6.163;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=1;MQRankSum=2.576;QD=3.09;ReadPosRankSum=2.302;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:33:265,33,0 chrI 27684 . A C 156.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.905;DP=70;Dels=0.00;FS=11.944;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=1;MQRankSum=3.275;QD=2.23;ReadPosRankSum=3.460;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:6,64:70:24:189,24,0 chrI 27685 . G T 161.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.488;DP=70;Dels=0.00;FS=11.944;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=1;MQRankSum=3.275;QD=2.30;ReadPosRankSum=3.460;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:6,64:70:24:194,24,0 chrI 27688 . A T 135.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.926;DP=77;Dels=0.00;FS=23.738;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=1;MQRankSum=4.469;QD=1.75;ReadPosRankSum=3.907;SB=-7.211e+02 GT:AD:DP:GQ:PL 1/1:10,67:77:21:168,21,0 chrI 27693 . G C 107.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.517;DP=80;Dels=0.00;FS=31.531;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=1;MQRankSum=4.751;QD=1.34;ReadPosRankSum=3.533;SB=-6.991e+02 GT:AD:DP:GQ:PL 1/1:11,68:80:18:140,18,0 chrI 27699 . T G 106.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.565;DP=75;Dels=0.00;FS=33.878;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=1;MQRankSum=5.057;QD=1.42;ReadPosRankSum=3.281;SB=-6.131e+02 GT:AD:DP:GQ:PL 1/1:14,61:75:18:139,18,0 chrI 27701 . A T 112.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.236;DP=77;Dels=0.00;FS=40.694;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=1;MQRankSum=5.319;QD=1.46;ReadPosRankSum=3.892;SB=-6.411e+02 GT:AD:DP:GQ:PL 1/1:17,60:77:18:145,18,0 chrI 27702 . A T 109.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-5.117;DP=79;Dels=0.00;FS=46.367;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=1;MQRankSum=5.734;QD=1.38;ReadPosRankSum=3.872;SB=-6.261e+02 GT:AD:DP:GQ:PL 1/1:18,60:79:18:142,18,0 chrI 27703 . C G 104.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.185;DP=80;Dels=0.00;FS=47.147;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=1;MQRankSum=5.856;QD=1.30;ReadPosRankSum=3.871;SB=-6.171e+02 GT:AD:DP:GQ:PL 1/1:20,60:80:18:137,18,0 chrI 27716 . T G 137.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DP=101;Dels=0.00;FS=67.940;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=2;MQRankSum=6.500;QD=1.36;ReadPosRankSum=-1.682;SB=-4.801e+02 GT:AD:DP:GQ:PL 1/1:28,73:101:21:170,21,0 chrI 27723 . A G 136.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.225;DP=83;Dels=0.00;FS=108.268;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=3;MQRankSum=5.657;QD=1.64;ReadPosRankSum=-2.574;SB=-1.401e+02 GT:AD:DP:GQ:PL 1/1:28,55:83:21:169,21,0 chrI 27725 . C T 137.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=83;Dels=0.00;FS=108.268;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=3;MQRankSum=5.865;QD=1.65;ReadPosRankSum=-3.654;SB=-1.711e+02 GT:AD:DP:GQ:PL 1/1:28,55:83:21:170,21,0 chrI 27726 . A G 136.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.775;DP=83;Dels=0.00;FS=108.268;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=3;MQRankSum=5.802;QD=1.64;ReadPosRankSum=-3.737;SB=-1.671e+02 GT:AD:DP:GQ:PL 1/1:28,55:83:21:169,21,0 chrI 27729 . C A 136.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.198;DP=93;Dels=0.00;FS=114.605;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=3;MQRankSum=5.837;QD=1.46;ReadPosRankSum=-5.045;SB=-1.431e+02 GT:AD:DP:GQ:PL 1/1:28,65:93:21:169,21,0 chrI 27732 . G T 112.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.968;DP=97;Dels=0.00;FS=115.993;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=3;MQRankSum=5.793;QD=1.16;ReadPosRankSum=-6.084;SB=-1.141e+02 GT:AD:DP:GQ:PL 1/1:28,69:97:18:145,18,0 chrI 27738 . A C 85.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.935;DP=96;Dels=0.00;FS=127.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=3;MQRankSum=5.854;QD=0.89;ReadPosRankSum=-6.712;SB=-9.227e+01 GT:AD:DP:GQ:PL 1/1:28,68:96:15:118,15,0 chrI 27744 . T C 161.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.918;DP=97;Dels=0.00;FS=120.079;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=3;MQRankSum=5.151;QD=1.66;ReadPosRankSum=-5.879;SB=-9.904e+01 GT:AD:DP:GQ:PL 1/1:28,69:97:24:194,24,0 chrI 27747 . T A 142.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.138;DP=91;Dels=0.00;FS=116.019;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=3;MQRankSum=5.672;QD=1.56;ReadPosRankSum=-4.978;SB=-1.031e+02 GT:AD:DP:GQ:PL 1/1:28,63:91:21:175,21,0 chrI 27749 . C T 137.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.635;DP=91;Dels=0.00;FS=116.019;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=3;MQRankSum=5.533;QD=1.51;ReadPosRankSum=-4.460;SB=-7.307e+01 GT:AD:DP:GQ:PL 1/1:28,63:91:21:170,21,0 chrI 27750 . G A 139.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.091;DP=91;Dels=0.00;FS=114.567;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=3;MQRankSum=5.407;QD=1.53;ReadPosRankSum=-4.197;SB=-1.011e+02 GT:AD:DP:GQ:PL 1/1:28,62:91:21:172,21,0 chrI 27756 . A G 140.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.757;DP=91;Dels=0.00;FS=125.127;HaplotypeScore=45.0346;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=3;MQRankSum=5.662;QD=1.54;ReadPosRankSum=-2.267;SB=-7.207e+01 GT:AD:DP:GQ:PL 1/1:28,63:91:21:173,21,0 chrI 27761 . G A 147.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.009;DP=85;Dels=0.00;FS=116.109;HaplotypeScore=46.6120;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=3;MQRankSum=5.419;QD=1.73;ReadPosRankSum=0.071;SB=-7.707e+01 GT:AD:DP:GQ:PL 1/1:28,57:85:21:180,21,0 chrI 27781 . C T 115.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.003;DP=74;Dels=0.00;FS=63.965;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=2;MQRankSum=3.384;QD=1.56;ReadPosRankSum=2.401;SB=-7.414e+01 GT:AD:DP:GQ:PL 1/1:16,56:74:18:148,18,0 chrI 27782 . C G 85.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=72;Dels=0.00;FS=63.965;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=2;MQRankSum=4.486;QD=1.18;ReadPosRankSum=2.724;SB=-7.127e+01 GT:AD:DP:GQ:PL 1/1:16,56:72:15:118,15,0 chrI 27783 . A G 115.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.193;DP=72;Dels=0.00;FS=63.965;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=2;MQRankSum=3.561;QD=1.60;ReadPosRankSum=2.665;SB=-7.114e+01 GT:AD:DP:GQ:PL 1/1:16,56:72:18:148,18,0 chrI 27798 . T C 83.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.389;DP=57;Dels=0.00;FS=13.361;HaplotypeScore=3.4930;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=2;MQRankSum=2.130;QD=1.46;ReadPosRankSum=1.901;SB=-2.427e+01 GT:AD:DP:GQ:PL 1/1:4,52:57:15:116,15,0 chrI 27804 . C A 41.97 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=2;QD=0.84;SB=-2.598e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:9:74,9,0 chrI 27810 . T C 83.26 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=1;QD=1.73;SB=-4.527e+01 GT:AD:DP:GQ:PL 1/1:1,47:48:15:116,15,0 chrI 27816 . G A 159.03 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=0;QD=3.46;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:24:192,24,0 chrI 27822 . T C 106.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;MQRankSum=-1.733;QD=3.03;ReadPosRankSum=1.634;SB=-2.101e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:18:139,18,0 chrI 27823 . C A 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=3.12;SB=-2.151e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:18:142,18,0 chrI 27825 . C T 206 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=5.02;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:239,30,0 chrI 27914 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=17.89;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1142,141,0 chrI 27970 . T G 428 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=14.76;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:57:461,57,0 chrI 27983 . T A 577 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=18.03;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:610,72,0 chrI 27997 . T C 625 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;QD=16.89;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:658,81,0 chrI 28007 . G C 876 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=17.18;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:909,111,0 chrI 28117 . G C 1261 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=19.70;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1294,164,0 chrI 28167 . A T 862 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.16;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:895,105,0 chrI 28321 . G A 1043 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.45;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1076,135,0 chrI 28352 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.22;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1115,132,0 chrI 28385 . A G 756 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.18;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:789,96,0 chrI 28402 . T C 617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.079;QD=13.71;ReadPosRankSum=1.654;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:81:650,81,0 chrI 28433 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=15.65;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:831,99,0 chrI 28458 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.84;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:892,105,0 chrI 28517 . A G 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=49;Dels=0.00;FS=3.033;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.026;QD=16.39;ReadPosRankSum=2.348;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:2,46:49:99:836,102,0 chrI 28529 . T C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=3.093;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.015;QD=17.90;ReadPosRankSum=2.352;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:928,114,0 chrI 28666 . A G 1119 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=16.22;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1152,144,0 chrI 28673 . A T 1025 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=13.85;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1058,129,0 chrI 28684 . A G 964 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=13.77;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:997,123,0 chrI 28812 . T C 841 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.56;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:874,108,0 chrI 29228 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.44;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1047,132,0 chrI 29970 . C T 624 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=12.73;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:78:657,78,0 chrI 29984 . T G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.449;DP=47;Dels=0.00;FS=6.172;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=1.028;QD=0.36;ReadPosRankSum=-2.398;SB=1.24 GT:AD:DP:GQ:PL 1/1:45,2:47:6:48,6,0 chrI 30004 . T C 623 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.54;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:656,84,0 chrI 30011 . A T 777 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.87;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:810,96,0 chrI 30018 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.15;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:96:822,96,0 chrI 30036 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.84;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:637,75,0 chrI 30044 . A T 505 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.52;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:538,66,0 chrI 30051 . C T 359 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.16;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:48:392,48,0 chrI 30055 . C T 352 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.78;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:45:385,45,0 chrI 30125 . G T 87.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=3.79;SB=-2.103e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:15:120,15,0 chrI 30153 . G A 183.01 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=21.2125;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=7.32;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:216,27,0 chrI 30164 . G A 236 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=7.87;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,28:30:33:269,33,0 chrI 30190 . A G 328 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=8.41;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:361,45,0 chrI 30198 . T C 412 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=9.81;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:445,57,0 chrI 30202 . C T 388 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=9.46;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:54:421,54,0 chrI 30226 . G A 409 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=9.51;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:54:442,54,0 chrI 30335 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=20.47;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1302,162,0 chrI 30361 . A T 845 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=17.24;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:878,108,0 chrI 30371 . C A 567 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=12.60;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:78:600,78,0 chrI 30382 . C A 553 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=12.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:75:586,75,0 chrI 30388 . G A 457 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=11.42;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:60:490,60,0 chrI 30427 . G C 271 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=6.45;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:39:304,39,0 chrI 30435 . G A 327 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=6.96;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:45:360,45,0 chrI 30468 . G C 427 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=10.17;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:60:460,60,0 chrI 30478 . C T 496 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=9.36;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:66:529,66,0 chrI 30490 . A G 615 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=11.83;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:648,84,0 chrI 30522 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=16.77;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1140,141,0 chrI 30585 . T A 835 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=15.75;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:868,108,0 chrI 30601 . C T 721 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=15.67;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:46:93:754,93,0 chrI 30605 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2243;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=15.82;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:824,102,0 chrI 30661 . T A 633 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=10.38;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:666,84,0 chrI 30662 . T G 620 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=10.16;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:653,84,0 chrI 30669 . T C 676 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;MQRankSum=-1.570;QD=10.56;ReadPosRankSum=1.678;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:90:709,90,0 chrI 30670 . T C 658 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=10.28;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:87:691,87,0 chrI 30713 . T G 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=75;Dels=0.00;FS=7.930;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-1.617;QD=14.16;ReadPosRankSum=2.350;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1095,138,0 chrI 30747 . A C 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=1.586;QD=14.92;ReadPosRankSum=1.683;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1092,135,0 chrI 30749 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=15.17;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1110,135,0 chrI 30817 . T C 694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=3.227;HaplotypeScore=8.4013;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;MQRankSum=0.761;QD=15.77;ReadPosRankSum=1.944;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:90:727,90,0 chrI 30832 . C G 767 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=17.43;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:800,99,0 chrI 31000 . T A 763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=55;Dels=0.00;FS=3.602;HaplotypeScore=7.6858;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.724;QD=13.87;ReadPosRankSum=0.913;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:80:796,80,0 chrI 31018 . G A 601 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=14.31;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:634,78,0 chrI 31072 . C A 774 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=17.20;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:807,96,0 chrI 31151 . G T 375 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.00;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:408,48,0 chrI 31154 . G A 369 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=14.19;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:402,48,0 chrI 31391 . A G 496 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.00;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:529,66,0 chrI 31539 . A G 393 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.09;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:426,54,0 chrI 32139 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.03;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1460,174,0 chrI 32271 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.1045;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.32;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2158,263,0 chrI 32304 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.44;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1934,239,0 chrI 32574 . T G 1720 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=16.38;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1753,218,0 chrI 32595 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.1113;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=16.52;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1652,204,0 chrI 32652 . A C 1756 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.0047;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=16.57;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1789,222,0 chrI 32766 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0135;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=14.41;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1287,156,0 chrI 32880 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.99;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1647,201,0 chrI 33147 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.56;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1534,183,0 chrI 33347 . T A 1544 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=14.43;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1577,189,0 chrI 33348 . G T 1810 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=16.76;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1843,222,0 chrI 33512 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9146;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.63;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2291,287,0 chrI 33548 . A C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=115;Dels=0.00;FS=3.541;HaplotypeScore=8.1313;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.966;QD=19.25;ReadPosRankSum=1.640;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2247,275,0 chrI 33612 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.25;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1957,242,0 chrI 33690 . G A 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DP=79;Dels=0.00;FS=3.123;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.844;QD=17.94;ReadPosRankSum=0.133;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1450,159,0 chrI 33741 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.9751;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.72;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1823,219,0 chrI 33864 . G C 2875 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.54;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2908,368,0 chrI 34308 . C T 1963 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=15.46;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1996,243,0 chrI 34314 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=13.82;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1788,219,0 chrI 35059 . G A 375 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=14.42;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:408,48,0 chrI 35070 . C T 410 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=14.64;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:443,51,0 chrI 35466 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.16;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1451,174,0 chrI 35508 . A G 1647 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.2247;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.10;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1680,207,0 chrI 35565 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.99;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2174,269,0 chrI 35568 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=127;Dels=0.00;FS=2.926;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-0.010;QD=17.69;ReadPosRankSum=0.320;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2280,279,0 chrI 35631 . G C 1457 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=15.02;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1490,188,0 chrI 35697 . T G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=10.886;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.145;QD=16.44;ReadPosRankSum=2.820;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1414,179,0 chrI 35736 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.37;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1432,174,0 chrI 35751 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=14.32;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1336,162,0 chrI 35796 . T C 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=8.129;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.692;QD=14.78;ReadPosRankSum=2.342;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1378,171,0 chrI 35818 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7841;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.047;QD=16.45;ReadPosRankSum=1.696;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1612,201,0 chrI 35970 . T C 963 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.89;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:996,123,0 chrI 36005 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.10;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1389,171,0 chrI 36048 . C G 1312 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.49;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1345,168,0 chrI 36123 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.49;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1222,147,0 chrI 36160 . G A 899 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.24;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:932,111,0 chrI 36434 . T A 634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=68;Dels=0.00;FS=2.036;HaplotypeScore=60.1222;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.440;QD=9.32;ReadPosRankSum=2.917;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:6,56:68:81:667,81,0 chrI 36524 . C T 734 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=16.31;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:767,90,0 chrI 36550 . T A 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=2.645;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.223;QD=17.85;ReadPosRankSum=2.324;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:87:729,87,0 chrI 36574 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.49;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:828,102,0 chrI 36637 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.97;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:680,84,0 chrI 36838 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.06;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1348,162,0 chrI 36898 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.89;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:793,99,0 chrI 37092 . T C 972 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1005,126,0 chrI 37294 . T C 2251 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.64;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2284,287,0 chrI 37510 . T G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.032;QD=17.54;ReadPosRankSum=1.576;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1612,201,0 chrI 37511 . G C 1598 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.16;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1631,203,0 chrI 37553 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.2257;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.01;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1479,186,0 chrI 38036 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.14;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2024,243,0 chrI 38108 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.51;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1662,201,0 chrI 38120 . A T 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=95;Dels=0.00;FS=5.746;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.351;QD=18.94;ReadPosRankSum=2.820;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1832,219,0 chrI 38231 . G T 1659 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.6884;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=16.11;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1692,201,0 chrI 38361 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.18;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1395,168,0 chrI 38408 . G T 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1739;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.905;QD=19.24;ReadPosRankSum=-1.422;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1322,156,0 chrI 38504 . T G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4886;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.591;QD=19.04;ReadPosRankSum=1.691;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1651,201,0 chrI 38533 . T C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.151;QD=19.38;ReadPosRankSum=1.694;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1835,227,0 chrI 39052 . T G 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.590;DP=159;Dels=0.00;FS=25.619;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.481;QD=16.11;ReadPosRankSum=4.752;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:8,147:159:99:2594,314,0 chrI 39064 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.55;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:0,180:181:99:3210,386,0 chrI 39162 . C G 2081 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8739;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2114,258,0 chrI 39381 . T A 1964 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.07;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1997,237,0 chrI 39795 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1204,144,0 chrI 40237 . C T 937 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.6098;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.12;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:970,117,0 chrI 40380 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.15;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1228,150,0 chrI 40860 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.72;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1610,198,0 chrI 40866 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=16.50;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1452,177,0 chrI 40913 . G T 1140 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=12.81;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1173,141,0 chrI 40914 . C G 1103 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=12.26;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1136,141,0 chrI 41157 . G A 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.662;QD=20.53;ReadPosRankSum=0.577;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2086,252,0 chrI 41271 . A C 1887 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.26;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1920,239,0 chrI 41456 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=3.194;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.503;QD=17.77;ReadPosRankSum=1.703;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2183,269,0 chrI 41481 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.160;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.822;QD=18.17;ReadPosRankSum=1.703;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2195,272,0 chrI 41736 . T C 1722 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=15.94;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1755,218,0 chrI 41739 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=16.77;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1878,228,0 chrI 41883 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.19;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1322,159,0 chrI 41987 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.62;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1210,147,0 chrI 42115 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.02;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1745,218,0 chrI 42257 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7129;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.86;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1998,237,0 chrI 42290 . A T 1749 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=14.70;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1782,219,0 chrI 42304 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.6890;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=11.46;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1511,183,0 chrI 42306 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=11.21;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:1457,171,0 chrI 42315 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.8973;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=10.02;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1376,162,0 chrI 42410 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.91;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1149,138,0 chrI 42413 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.69;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1101,129,0 chrI 42635 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=19.26;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2036,240,0 chrI 43004 . G A 1126 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1159,138,0 chrI 43316 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.49;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1721,204,0 chrI 43382 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.68;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1730,215,0 chrI 43448 . G C 2272 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.5798;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.78;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2305,281,0 chrI 43565 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.69;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1468,183,0 chrI 43784 . C G 2194 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.77;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2227,275,0 chrI 43850 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.01;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1564,189,0 chrI 43856 . A C 1410 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.02;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1443,180,0 chrI 44588 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.54;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1987,245,0 chrI 44891 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=13.92;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:952,120,0 chrI 44935 . C A 1206 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.23;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1239,150,0 chrI 45024 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.89;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1607,189,0 chrI 45198 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.94;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1302,159,0 chrI 45546 . A T 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.420;QD=15.21;ReadPosRankSum=1.680;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1052,126,0 chrI 45831 . G C 1724 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.28;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1757,218,0 chrI 46576 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.21;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2081,257,0 chrI 46669 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.379;DP=112;Dels=0.00;FS=5.122;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.839;QD=16.62;ReadPosRankSum=3.379;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:4,108:112:99:1894,236,0 chrI 46723 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5398;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.83;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2199,272,0 chrI 46846 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.06;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1947,240,0 chrI 46927 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.16;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:85:99:1322,165,0 chrI 46966 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.907;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.666;QD=16.34;ReadPosRankSum=1.679;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1095,135,0 chrI 47044 . A C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.375;QD=18.22;ReadPosRankSum=1.685;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1381,168,0 chrI 47206 . A G 1055 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.48;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1088,138,0 chrI 47518 . A G 2066 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.61;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2099,266,0 chrI 47845 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=115;Dels=0.00;FS=2.983;HaplotypeScore=8.8405;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.025;QD=19.10;ReadPosRankSum=2.407;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2230,273,0 chrI 47896 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7943;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=18.22;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2165,258,0 chrI 47908 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=14.74;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1772,216,0 chrI 48115 . G C 752 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.67;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:785,96,0 chrI 48252 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=13.54;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1143,135,0 chrI 48526 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.28;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1267,156,0 chrI 48751 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.506;DP=109;Dels=0.00;FS=11.173;HaplotypeScore=19.1392;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.996;QD=17.39;ReadPosRankSum=3.756;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:5,102:109:99:1929,237,0 chrI 48890 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.01;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1510,180,0 chrI 48935 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.048;QD=18.93;ReadPosRankSum=1.687;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1472,183,0 chrI 49103 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8022;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.32;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1675,207,0 chrI 49373 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1290,156,0 chrI 49403 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.47;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1609,195,0 chrI 49458 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.99;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1792,210,0 chrI 49505 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.328;QD=21.38;ReadPosRankSum=2.388;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1722,213,0 chrI 49604 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.95;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1182,141,0 chrI 49871 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1946,231,0 chrI 50204 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.74;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1860,230,0 chrI 50270 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.41;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1992,245,0 chrI 50343 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.59;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1581,192,0 chrI 50354 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.17;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1475,177,0 chrI 50384 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.09;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1484,177,0 chrI 50411 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.57;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1298,156,0 chrI 50456 . G A 955 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.47;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:988,117,0 chrI 50498 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7750;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.46;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1510,183,0 chrI 50960 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.99;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1532,183,0 chrI 50974 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.98;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1376,162,0 chrI 51026 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.32;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1094,132,0 chrI 51029 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=15.25;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1070,132,0 chrI 51095 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.66;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1442,171,0 chrI 51146 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1936,239,0 chrI 51371 . A T 881 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.46;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:914,111,0 chrI 51599 . T A 520 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.44;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:66:553,66,0 chrI 51930 . T G 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DP=25;Dels=0.00;FS=4.437;HaplotypeScore=3.7104;MLEAC=1;MLEAF=0.500;MQ=58.13;MQ0=0;MQRankSum=0.028;QD=3.24;ReadPosRankSum=-0.481;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:9,16:25:81:111,0,81 chrI 51951 . T G 382 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.10;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:54:415,54,0 chrI 52670 . A G 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=2.800;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.252;QD=16.37;ReadPosRankSum=2.267;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:917,114,0 chrI 52681 . A G 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.970;QD=16.16;ReadPosRankSum=1.525;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:857,105,0 chrI 52849 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.80;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1581,195,0 chrI 53146 . T G 1275 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.47;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1308,162,0 chrI 53836 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.50;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1550,192,0 chrI 53843 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.81;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1511,183,0 chrI 53851 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.13;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1602,189,0 chrI 54175 . A G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.016;QD=18.46;ReadPosRankSum=2.194;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1473,167,0 chrI 54198 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.59;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1907,225,0 chrI 54244 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=4.818;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.295;QD=18.56;ReadPosRankSum=1.695;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1796,222,0 chrI 54508 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.536;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.381;QD=18.73;ReadPosRankSum=1.688;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1513,186,0 chrI 54806 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=14.77;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1274,156,0 chrI 55421 . T C 986 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1019,126,0 chrI 55508 . T C 876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.083;QD=18.25;ReadPosRankSum=1.660;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:909,111,0 chrI 55525 . A G 820 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.52;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:853,105,0 chrI 55688 . T C 860 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.54;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:893,108,0 chrI 55793 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.82;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1181,147,0 chrI 55901 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.09;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1781,210,0 chrI 55910 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.29;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1827,222,0 chrI 56107 . T C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.323;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.674;QD=16.27;ReadPosRankSum=1.674;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,58:63:99:1058,132,0 chrI 56144 . T G 918 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.32;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:951,120,0 chrI 56211 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.26;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1606,192,0 chrI 56285 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.76;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1384,171,0 chrI 56368 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.12;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1540,186,0 chrI 56480 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.77;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1575,192,0 chrI 58494 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.9357;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.30;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2101,252,0 chrI 58644 . T A 2381 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.90;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2414,285,0 chrI 58794 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.50;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1700,204,0 chrI 59073 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.48;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1962,231,0 chrI 59145 . T C 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.692;QD=15.36;ReadPosRankSum=1.692;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1354,168,0 chrI 59229 . G T 1766 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.07;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1799,213,0 chrI 59349 . A C 2043 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.64;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2076,257,0 chrI 59394 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.46;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1960,237,0 chrI 59659 . C G 1741 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.33;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1774,219,0 chrI 59976 . T C 1014 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=11.79;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:86:99:1047,132,0 chrI 59979 . G T 917 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=11.46;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:950,117,0 chrI 59985 . T C 913 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.438;QD=11.00;ReadPosRankSum=1.607;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:946,117,0 chrI 60198 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.55;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1128,135,0 chrI 60267 . G C 1276 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.58;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1309,165,0 chrI 60417 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6750;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.04;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2242,264,0 chrI 60912 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.2418;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.87;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2974,368,0 chrI 61119 . C T 3676.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=18.8080;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.11;SB=-2.022e+03 GT:AD:DP:GQ:PL 1/1:0,202:203:99:3676,440,0 chrI 61451 . G A 2904 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.98;SB=-1.785e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2937,351,0 chrI 61585 . C T 3276.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.6750;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.693;QD=18.10;ReadPosRankSum=0.474;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:1,180:181:99:3276,390,0 chrI 62110 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.8315;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.59;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1824,222,0 chrI 62308 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.37;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1356,168,0 chrI 62361 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=14.89;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1075,132,0 chrI 62565 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.52;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1452,177,0 chrI 62654 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.11;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1829,216,0 chrI 62726 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1543,183,0 chrI 62893 . A T 1371 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.31;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1404,171,0 chrI 63025 . T C 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=3.680;HaplotypeScore=13.5564;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.114;QD=16.81;ReadPosRankSum=0.959;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1933,242,0 chrI 63385 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.344;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.776;QD=15.95;ReadPosRankSum=1.653;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1437,177,0 chrI 63520 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.39;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1338,168,0 chrI 63658 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1218,144,0 chrI 63820 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1601,203,0 chrI 64465 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.47;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1901,225,0 chrI 64663 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=15.93;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1674,207,0 chrI 64676 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6584;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=15.44;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1932,228,0 chrI 64781 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=114;Dels=0.00;FS=4.019;HaplotypeScore=8.5141;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.701;QD=17.32;ReadPosRankSum=1.046;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,110:114:99:2008,243,0 chrI 64906 . A C 1302 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=15.88;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1335,168,0 chrI 64954 . G A 1002 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=13.36;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1035,123,0 chrI 65365 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.70;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1471,177,0 chrI 65590 . T C 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=5.836;HaplotypeScore=5.6804;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.657;QD=15.76;ReadPosRankSum=1.657;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:93:758,93,0 chrI 66003 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.34;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1518,189,0 chrI 66129 . A G 1332 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.03;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1365,168,0 chrI 66168 . T G 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.72;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1119,138,0 chrI 66546 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.34;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1485,180,0 chrI 67269 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.66;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1918,236,0 chrI 67275 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=16.05;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1799,216,0 chrI 67296 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=15.17;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1777,224,0 chrI 67476 . C G 1272 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.31;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1305,162,0 chrI 67506 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.21;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1858,222,0 chrI 67715 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.75;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1293,159,0 chrI 68725 . G C 1785 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.79;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1818,230,0 chrI 68739 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=12.841;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.673;QD=17.26;ReadPosRankSum=2.393;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1517,183,0 chrI 68760 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=16.09;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1304,159,0 chrI 68869 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.32;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:1868,231,0 chrI 68959 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3014;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.59;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1966,245,0 chrI 69112 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=15.87;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1509,189,0 chrI 69280 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7308;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.81;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1994,237,0 chrI 69585 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=16.73;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1104,138,0 chrI 69603 . T C 1072 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.49;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1105,135,0 chrI 69675 . G A 759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=51;Dels=0.00;FS=2.923;HaplotypeScore=4.5405;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=1.361;QD=14.88;ReadPosRankSum=2.104;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,48:51:96:792,96,0 chrI 69678 . A G 731 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.04;FS=0.000;HaplotypeScore=3.7518;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=14.06;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:764,93,0 chrI 69697 . G C 653 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=13.89;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:686,84,0 chrI 69951 . A T 836 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.17;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:869,102,0 chrI 70024 . T C 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.115;QD=17.78;ReadPosRankSum=1.675;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1100,138,0 chrI 70045 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.3157;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=16.39;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1000,126,0 chrI 70071 . C T 770 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=13.05;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:96:803,96,0 chrI 70269 . A G 1138 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.51;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1171,147,0 chrI 70345 . G T 828 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.40;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:861,102,0 chrI 70497 . A G 832 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.81;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:865,105,0 chrI 70621 . T C 504 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.67;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:66:537,66,0 chrI 70675 . G A 239 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.28;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:272,33,0 chrI 70686 . T C 166.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=8.30;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:199,24,0 chrI 70697 . T C 263 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=11.95;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:296,36,0 chrI 70723 . A T 553 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=16.76;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:586,69,0 chrI 71008 . T C 259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=15.5551;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.261;QD=11.77;ReadPosRankSum=1.576;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:36:292,36,0 chrI 71601 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=14.42;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:956,117,0 chrI 71616 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.58;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1222,144,0 chrI 72193 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.6809;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.95;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2372,288,0 chrI 72862 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=22.0831;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.89;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2262,273,0 chrI 72952 . T C 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.156;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.780;QD=14.88;ReadPosRankSum=1.580;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1417,179,0 chrI 73490 . T C 1108 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1141,141,0 chrI 73633 . T A 771 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=16.40;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:804,96,0 chrI 73641 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=14.46;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:756,93,0 chrI 73682 . A G 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.453;QD=16.28;ReadPosRankSum=1.679;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1091,138,0 chrI 73720 . C A 1027 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.02;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1060,126,0 chrI 73801 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.53;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1634,195,0 chrI 73871 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.99;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1392,174,0 chrI 74208 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.05;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1712,204,0 chrI 74209 . A C 1407 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.29;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1440,180,0 chrI 74227 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=13.92;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1272,153,0 chrI 74242 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3380;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=12.22;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1072,132,0 chrI 74786 . G A 596 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.53;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:629,75,0 chrI 75073 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0172;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.37;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2320,279,0 chrI 75211 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.928;QD=21.68;ReadPosRankSum=1.670;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1247,156,0 chrI 75277 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.26;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1479,180,0 chrI 75907 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=15.46;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1115,135,0 chrI 75912 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.90;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1035,129,0 chrI 76051 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.10;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1401,165,0 chrI 76096 . T C 1199 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=16.20;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1232,150,0 chrI 76117 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=16.16;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1229,153,0 chrI 76417 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.28;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1422,177,0 chrI 76496 . A G 902 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=15.29;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:935,114,0 chrI 76497 . A G 879 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=14.18;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:912,111,0 chrI 76840 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.30;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1011,120,0 chrI 77073 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5786;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.87;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1801,219,0 chrI 77115 . G T 1894 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.59;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1927,239,0 chrI 77152 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.66;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1665,207,0 chrI 77433 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=60.85;MQ0=0;QD=18.22;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1618,192,0 chrI 77554 . T G 634 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=8.45;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:84:667,84,0 chrI 77581 . T A 949 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=13.00;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:982,120,0 chrI 77737 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.99;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1324,162,0 chrI 78187 . T C 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.609;QD=19.49;ReadPosRankSum=2.378;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2040,254,0 chrI 78271 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=17.82;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1833,230,0 chrI 78289 . C T 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.4056;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.393;QD=17.60;ReadPosRankSum=0.414;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1670,204,0 chrI 78346 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.08;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1931,239,0 chrI 78461 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.6370;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.95;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2407,285,0 chrI 78560 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=4.591;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.527;QD=19.15;ReadPosRankSum=1.703;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2312,282,0 chrI 78700 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.52;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1709,212,0 chrI 78910 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.773;QD=16.07;ReadPosRankSum=1.679;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,129:135:99:2203,267,0 chrI 78929 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.74;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2309,276,0 chrI 78970 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=15.35;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2136,261,0 chrI 78973 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=15.95;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2155,255,0 chrI 79012 . T C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.341;QD=17.50;ReadPosRankSum=1.672;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2063,257,0 chrI 79085 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.32;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1821,216,0 chrI 79449 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.82;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1156,147,0 chrI 79659 . A T 1040 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.91;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1073,129,0 chrI 79680 . T G 993 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.39;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1026,126,0 chrI 79705 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.54;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1127,135,0 chrI 79924 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.341;QD=18.89;ReadPosRankSum=1.621;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1204,150,0 chrI 80946 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1909,228,0 chrI 81731 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.08;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1979,245,0 chrI 81841 . A G 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=127;Dels=0.00;FS=2.982;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.698;QD=18.88;ReadPosRankSum=2.391;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:2,123:127:99:2431,299,0 chrI 82076 . G C 1931 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.99;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1964,242,0 chrI 82099 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.66;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1750,213,0 chrI 82379 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.94;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2426,285,0 chrI 82662 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.90;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1866,228,0 chrI 82711 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.54;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1927,242,0 chrI 83029 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.64;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1673,198,0 chrI 83337 . A G 2395 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.38;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2428,299,0 chrI 83613 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.184;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.611;QD=20.07;ReadPosRankSum=1.664;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2080,255,0 chrI 83903 . T C 2422 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.92;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2455,302,0 chrI 84108 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3028;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.33;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1388,171,0 chrI 84167 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.64;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1647,206,0 chrI 84349 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.136;QD=16.67;ReadPosRankSum=1.630;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1750,216,0 chrI 84438 . G C 918 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=13.70;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:951,117,0 chrI 84858 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1561,186,0 chrI 84896 . C G 1782 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1815,222,0 chrI 85436 . A T 1166 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.2776;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.76;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1199,144,0 chrI 85480 . C T 1210 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.29;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1243,147,0 chrI 85658 . T A 810 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=12.46;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:843,102,0 chrI 85944 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.91;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1183,147,0 chrI 86018 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.97;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1247,156,0 chrI 86164 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.13;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1168,141,0 chrI 86597 . A G 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=2.873;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.780;QD=16.63;ReadPosRankSum=2.367;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1014,126,0 chrI 86648 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.30;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:90:747,90,0 chrI 86849 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.30;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1819,213,0 chrI 86939 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=17.33;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1402,165,0 chrI 86963 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.77;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1366,168,0 chrI 87548 . A G 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=5.999;HaplotypeScore=8.2198;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.076;QD=19.89;ReadPosRankSum=2.942;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2420,302,0 chrI 87602 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.66;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1880,225,0 chrI 87608 . A T 1835 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.54;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1868,222,0 chrI 87859 . T G 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.064;QD=20.11;ReadPosRankSum=2.413;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2748,338,0 chrI 88008 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.56;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1246,153,0 chrI 88393 . A C 1196 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.29;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1229,153,0 chrI 88995 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2087,255,0 chrI 89298 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.58;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1756,221,0 chrI 89430 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6405;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.18;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1633,195,0 chrI 89517 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.61;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1913,228,0 chrI 89762 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1323,162,0 chrI 89805 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.04;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1347,162,0 chrI 89862 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=15.43;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1206,147,0 chrI 89863 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=15.35;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1169,138,0 chrI 90106 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.23;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:96:791,96,0 chrI 90168 . A G 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.825;QD=16.38;ReadPosRankSum=1.650;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:87:721,87,0 chrI 90330 . G T 1231 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.65;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1264,156,0 chrI 90387 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.57;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:878,105,0 chrI 90528 . C T 654 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.35;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:687,81,0 chrI 90665 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.63;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1085,129,0 chrI 90924 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.10;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:938,117,0 chrI 91021 . G C 1191 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.19;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1224,153,0 chrI 91110 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.94;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1269,153,0 chrI 91148 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.12;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1333,156,0 chrI 91173 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=17.56;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1280,153,0 chrI 91314 . G C 1045 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.13;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1078,135,0 chrI 91362 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.42;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1148,141,0 chrI 91614 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.09;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2131,269,0 chrI 91665 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=13.2342;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.22;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2243,264,0 chrI 91791 . A C 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.956;QD=18.14;ReadPosRankSum=-0.060;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1085,135,0 chrI 91938 . A T 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.509;QD=19.51;ReadPosRankSum=2.373;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2530,303,0 chrI 92115 . G C 1109 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.31;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1142,141,0 chrI 92310 . G T 1318 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.97;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1351,159,0 chrI 92368 . A T 1568 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.9885;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.67;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1601,192,0 chrI 92532 . C T 768 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.76;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:801,96,0 chrI 92703 . G T 1259 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.37;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1292,153,0 chrI 92722 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.29;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1460,177,0 chrI 92767 . G C 1709 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1100;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.35;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1742,210,0 chrI 92891 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.75;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1862,222,0 chrI 92934 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=17.87;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1284,153,0 chrI 92941 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=15.72;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1196,147,0 chrI 92955 . A G 1098 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=15.04;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1131,141,0 chrI 92983 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.9103;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=14.68;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1325,159,0 chrI 93184 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.99;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2055,251,0 chrI 93310 . C G 1772 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=17.04;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1805,227,0 chrI 93319 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.00;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1971,240,0 chrI 93325 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=17.14;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1935,231,0 chrI 93424 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3639;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.37;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1539,186,0 chrI 93466 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.884;QD=16.34;ReadPosRankSum=1.697;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1651,206,0 chrI 93563 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.19;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1875,231,0 chrI 93789 . T A 1701 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.91;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1734,204,0 chrI 93865 . G T 1729 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.7474;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=15.30;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1762,210,0 chrI 94414 . C G 1421 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=16.92;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1454,183,0 chrI 94472 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.21;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2557,300,0 chrI 94578 . C A 1806 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.29;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1839,225,0 chrI 94682 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.37;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1118,138,0 chrI 94767 . C G 1999 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.51;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2032,251,0 chrI 94863 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=2.982;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.678;QD=19.28;ReadPosRankSum=2.413;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2655,326,0 chrI 94915 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.04;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1990,243,0 chrI 95018 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=17.46;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1203,150,0 chrI 95043 . A T 1156 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=18.65;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1189,144,0 chrI 95055 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=16.74;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1054,126,0 chrI 95073 . T A 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.39;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1118,135,0 chrI 95116 . T C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=4.649;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.336;QD=16.32;ReadPosRankSum=1.683;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,69:72:99:1208,150,0 chrI 95139 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.36;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1685,201,0 chrI 95169 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.84;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1746,207,0 chrI 95190 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=16.10;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1595,198,0 chrI 95238 . A T 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.685;QD=19.53;ReadPosRankSum=1.692;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1752,207,0 chrI 95327 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.14;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1250,156,0 chrI 95373 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=11.16;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:591,72,0 chrI 95376 . T C 433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=51;Dels=0.00;FS=7.024;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;MQRankSum=0.801;QD=8.49;ReadPosRankSum=2.305;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:60:466,60,0 chrI 95388 . A G 443 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=9.63;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:476,60,0 chrI 95391 . T C 436 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.14;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:469,60,0 chrI 95407 . C T 430 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=8.11;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:57:463,57,0 chrI 95412 . G C 532 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=10.43;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:565,69,0 chrI 95448 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.11;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:957,114,0 chrI 95552 . G C 1901 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.40;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1934,239,0 chrI 96047 . C A 2178 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.55;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2211,264,0 chrI 96079 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.62;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1951,240,0 chrI 96092 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8907;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.88;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1755,213,0 chrI 97709 . T A 1445 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.79;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1478,180,0 chrI 97859 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:814,102,0 chrI 97926 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.35;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:970,117,0 chrI 98347 . A G 937 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:970,120,0 chrI 98419 . A T 1157 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.08;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1190,141,0 chrI 98636 . A T 734 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.68;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:767,93,0 chrI 98885 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.52;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1614,189,0 chrI 99107 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.89;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1259,153,0 chrI 99244 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.64;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1314,156,0 chrI 99440 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.24;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1620,195,0 chrI 99471 . A G 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.875;QD=16.72;ReadPosRankSum=1.695;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1588,198,0 chrI 100063 . A T 390 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=10.00;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:423,51,0 chrI 101177 . G C 856 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=16.15;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:889,108,0 chrI 101193 . T C 648 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=13.79;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:87:681,87,0 chrI 101198 . A G 661 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=13.77;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:694,84,0 chrI 101230 . C G 495 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=12.07;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:66:528,66,0 chrI 101371 . A T 1402 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1435,171,0 chrI 101471 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.17;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:887,111,0 chrI 101563 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.00;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:978,117,0 chrI 101581 . T C 722 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.51;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:755,93,0 chrI 101607 . A G 1024 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=17.07;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1057,129,0 chrI 101712 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.31;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1539,183,0 chrI 102345 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.06;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1279,150,0 chrI 102348 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.04;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1192,147,0 chrI 102486 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7873;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.27;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1367,162,0 chrI 102864 . T A 935 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=13.75;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:968,117,0 chrI 103068 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.88;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1106,141,0 chrI 103110 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.04;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1311,159,0 chrI 103141 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.54;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1121,141,0 chrI 103146 . T C 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.083;QD=15.19;ReadPosRankSum=2.317;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1172,147,0 chrI 103170 . T A 1225 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.78;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1258,150,0 chrI 103307 . G T 971 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.04;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1004,120,0 chrI 103724 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.35;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1282,159,0 chrI 103782 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2672;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.63;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1449,182,0 chrI 103899 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.080;QD=19.09;ReadPosRankSum=1.632;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1350,171,0 chrI 104042 . T G 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.000;QD=18.83;ReadPosRankSum=0.464;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1370,147,0 chrI 104469 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=5.384;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.037;QD=20.81;ReadPosRankSum=2.916;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1760,218,0 chrI 105028 . C T 1028 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.32;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1061,126,0 chrI 105132 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=13.4505;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.73;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1416,168,0 chrI 105800 . C A 1346 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1379,165,0 chrI 106581 . T A 2712 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.02;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2745,330,0 chrI 106953 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.01;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1839,219,0 chrI 107001 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.92;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1679,198,0 chrI 107028 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.77;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1685,204,0 chrI 107538 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2108,249,0 chrI 107970 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.26;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,110:115:99:1903,236,0 chrI 108084 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6785;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.04;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1747,210,0 chrI 108108 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=16.40;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1443,182,0 chrI 108426 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.54;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1471,174,0 chrI 108813 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.24;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2727,332,0 chrI 108864 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=15.57;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2088,257,0 chrI 108869 . G T 2406 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.80;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2439,294,0 chrI 108943 . T G 2242 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.33;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2275,287,0 chrI 108967 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.44;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1627,203,0 chrI 109720 . A C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.882;HaplotypeScore=10.2757;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.819;QD=16.50;ReadPosRankSum=1.701;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1864,233,0 chrI 109735 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2772;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.77;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1673,207,0 chrI 109783 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3552;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=12.58;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1165,141,0 chrI 109795 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=6.063;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.382;QD=12.84;ReadPosRankSum=2.922;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1189,150,0 chrI 109887 . T C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=4.130;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.470;QD=17.53;ReadPosRankSum=1.680;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2347,290,0 chrI 110014 . T C 2308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=9.358;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.044;QD=16.37;ReadPosRankSum=2.415;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2341,285,0 chrI 110101 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.84;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1603,195,0 chrI 110131 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.13;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1984,243,0 chrI 110595 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.999;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.428;QD=19.99;ReadPosRankSum=2.406;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2292,284,0 chrI 110703 . G A 197.01 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=75.5263;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=1;QD=2.49;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:27:230,27,0 chrI 110856 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.83;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1257,156,0 chrI 111180 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.527;DP=91;Dels=0.00;FS=8.157;HaplotypeScore=8.1591;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.967;QD=17.29;ReadPosRankSum=3.701;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:5,86:91:99:1606,201,0 chrI 111344 . A G 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-1.682;QD=17.49;ReadPosRankSum=1.682;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1240,153,0 chrI 111401 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=15.77;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1847,222,0 chrI 111655 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.4151;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=16.40;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1755,210,0 chrI 111719 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.14;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1583,189,0 chrI 111983 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.99;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1205,144,0 chrI 111986 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.23;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1222,150,0 chrI 112085 . C G 2548 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.23;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2581,314,0 chrI 112136 . G T 1795 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.47;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1828,222,0 chrI 112184 . T C 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.013;QD=19.66;ReadPosRankSum=2.400;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1979,243,0 chrI 112232 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=15.67;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1302,162,0 chrI 112339 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;DP=80;Dels=0.00;FS=4.094;HaplotypeScore=7.3627;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.642;QD=17.29;ReadPosRankSum=1.642;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1416,174,0 chrI 112373 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.25;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1534,192,0 chrI 112646 . T C 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3463;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.017;QD=18.31;ReadPosRankSum=1.698;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1901,239,0 chrI 112808 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=19.8224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.85;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1607,189,0 chrI 113207 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.44;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1428,180,0 chrI 113326 . C G 1304 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.94;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1337,162,0 chrI 113789 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4135;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.63;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1819,216,0 chrI 113857 . G C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.121;QD=20.19;ReadPosRankSum=0.836;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1749,216,0 chrI 113890 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.709;QD=14.74;ReadPosRankSum=1.653;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1330,168,0 chrI 113907 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.27;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1332,162,0 chrI 114102 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=16.41;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1231,147,0 chrI 114133 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.66;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1223,153,0 chrI 114148 . T G 1017 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=13.04;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1050,132,0 chrI 114227 . T C 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.169;QD=17.04;ReadPosRankSum=1.701;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1975,245,0 chrI 114258 . G C 1798 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.54;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1831,225,0 chrI 114357 . C A 1312 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.97;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1345,162,0 chrI 114589 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.4104;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.18;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2455,302,0 chrI 114652 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.9947;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=16.43;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1857,219,0 chrI 114824 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=15.44;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:1978,234,0 chrI 114842 . C T 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.6312;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.309;QD=17.22;ReadPosRankSum=-0.648;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2340,276,0 chrI 114884 . A G 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.050;QD=13.89;ReadPosRankSum=2.369;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,120:124:99:1755,213,0 chrI 114928 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.28;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1498,183,0 chrI 115134 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.08;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1335,162,0 chrI 115183 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.32;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1535,183,0 chrI 115458 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.71;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1689,201,0 chrI 115494 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.237;QD=18.71;ReadPosRankSum=2.323;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1492,186,0 chrI 115512 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.81;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1440,177,0 chrI 115785 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=18.16;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2158,255,0 chrI 115794 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.168;QD=16.06;ReadPosRankSum=1.704;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2025,246,0 chrI 116327 . T C 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.252;QD=13.55;ReadPosRankSum=1.698;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1429,177,0 chrI 116334 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=11.43;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1325,165,0 chrI 116340 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7387;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-0.969;QD=12.58;ReadPosRankSum=1.703;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1518,189,0 chrI 116511 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.4114;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=14.69;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1722,204,0 chrI 116526 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.087;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.580;QD=15.18;ReadPosRankSum=1.702;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1763,221,0 chrI 116548 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.034;QD=14.28;ReadPosRankSum=1.664;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1504,186,0 chrI 116850 . T A 1265 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.09;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1298,156,0 chrI 117369 . T C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=5.497;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.355;QD=16.54;ReadPosRankSum=1.688;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1340,162,0 chrI 117504 . A C 1151 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.18;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1184,147,0 chrI 117510 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.49;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1170,144,0 chrI 117600 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.85;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1951,245,0 chrI 117669 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=17.28;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1139,135,0 chrI 117678 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.70;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:985,120,0 chrI 117940 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.00;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1505,177,0 chrI 118116 . G A 740 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.97;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:773,93,0 chrI 118131 . C T 419 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=12.70;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,31:33:57:452,57,0 chrI 118606 . A G 613 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.77;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:81:646,81,0 chrI 118723 . A G 753 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.92;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:786,99,0 chrI 118822 . T C 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=4.216;HaplotypeScore=11.3772;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.680;QD=17.56;ReadPosRankSum=1.680;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1192,150,0 chrI 118997 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.71;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1314,165,0 chrI 119019 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.10;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1420,168,0 chrI 119350 . A G 1394 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.20;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1427,180,0 chrI 119605 . C T 947 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.27;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:980,117,0 chrI 120378 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.92;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1198,141,0 chrI 120473 . T C 886 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.11;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:919,111,0 chrI 120818 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.65;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:879,108,0 chrI 121421 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.50;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1452,183,0 chrI 121453 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.44;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1598,189,0 chrI 121796 . A G 1728 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.57;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1761,224,0 chrI 121907 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1899,228,0 chrI 121957 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2062,246,0 chrI 122045 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.63;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1859,230,0 chrI 122147 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.73;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1719,204,0 chrI 122202 . T A 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=8.445;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.774;QD=19.39;ReadPosRankSum=2.297;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1914,225,0 chrI 122768 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=17.68;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1129,135,0 chrI 122795 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.42;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1179,141,0 chrI 122846 . G C 1176 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.55;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1209,150,0 chrI 122954 . C A 1015 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.81;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1048,126,0 chrI 123008 . G C 1233 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.90;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1266,153,0 chrI 123047 . T A 1377 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.86;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1410,171,0 chrI 123074 . A G 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=6.240;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.749;QD=18.77;ReadPosRankSum=2.329;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1197,147,0 chrI 123428 . A G 1244 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.14;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1277,156,0 chrI 123707 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.33;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1367,171,0 chrI 123926 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.44;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1855,219,0 chrI 124001 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.39;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1250,156,0 chrI 124296 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.01;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1330,165,0 chrI 124313 . T G 829 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.80;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:862,108,0 chrI 124355 . A C 817 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=14.85;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:850,108,0 chrI 124373 . T C 732 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=14.08;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:96:765,96,0 chrI 124375 . T A 843 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=15.91;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:876,108,0 chrI 124452 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.05;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1938,228,0 chrI 124494 . C A 2214 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.09;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2247,270,0 chrI 124567 . T G 1646 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.84;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1679,207,0 chrI 124646 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.02;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1837,222,0 chrI 124649 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=16.27;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1774,221,0 chrI 124657 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=15.94;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1786,221,0 chrI 124671 . A G 1899 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=15.57;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1932,237,0 chrI 124719 . A C 1822 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.52;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1855,230,0 chrI 124906 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.08;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1619,195,0 chrI 125133 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.742;QD=17.97;ReadPosRankSum=1.687;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1435,180,0 chrI 125214 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.71;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:954,114,0 chrI 125610 . G A 1222 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=17.71;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1255,147,0 chrI 125616 . C T 1245 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=17.54;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1278,153,0 chrI 125619 . T C 1123 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=15.18;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1156,141,0 chrI 125793 . A T 1353 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0339;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.28;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1386,168,0 chrI 126258 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.04;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1252,150,0 chrI 126462 . A G 1531 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.95;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1564,192,0 chrI 126468 . A G 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=4.382;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.650;QD=14.55;ReadPosRankSum=1.696;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1430,177,0 chrI 126483 . G A 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;MQRankSum=0.224;QD=13.89;ReadPosRankSum=0.509;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1214,144,0 chrI 126501 . T C 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.066;DP=90;Dels=0.00;FS=7.577;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=-1.857;QD=12.17;ReadPosRankSum=4.033;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:6,83:90:99:1128,141,0 chrI 126600 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.37;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1562,186,0 chrI 126656 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.48;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1567,186,0 chrI 126902 . C G 399 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=8.31;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:54:432,54,0 chrI 127227 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.15;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1383,171,0 chrI 127274 . C G 1575 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.94;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1608,195,0 chrI 127533 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.08;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1750,216,0 chrI 127572 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.96;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1712,210,0 chrI 127881 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.59;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1799,213,0 chrI 127902 . T C 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.870;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.642;QD=17.07;ReadPosRankSum=1.693;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1569,192,0 chrI 128423 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.28;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1716,207,0 chrI 128455 . G T 1774 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.67;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1807,213,0 chrI 128756 . T G 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.506;QD=19.40;ReadPosRankSum=2.367;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,117:123:99:2419,296,0 chrI 128843 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.71;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1403,174,0 chrI 129023 . G T 1568 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=14.39;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1601,189,0 chrI 129067 . T G 1423 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=14.23;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1456,180,0 chrI 129075 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=12.37;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,94:101:99:1282,153,0 chrI 129476 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.38;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1521,189,0 chrI 129517 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=16.65;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1082,135,0 chrI 129629 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.606;QD=17.64;ReadPosRankSum=1.701;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1991,245,0 chrI 129656 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.70;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2037,249,0 chrI 129731 . T C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=6.139;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.912;QD=15.48;ReadPosRankSum=2.893;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1627,203,0 chrI 130254 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=15.30;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:798,99,0 chrI 130625 . T C 862 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.59;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:895,111,0 chrI 130691 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.49;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1124,138,0 chrI 130918 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.112;QD=19.10;ReadPosRankSum=1.676;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1217,153,0 chrI 131539 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.77;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2191,264,0 chrI 131584 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.9173;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.85;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2534,308,0 chrI 131635 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.15;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2265,284,0 chrI 132005 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=12.63;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1220,144,0 chrI 132468 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=17.39;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1355,168,0 chrI 132522 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.80;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1209,147,0 chrI 133198 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.02;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1378,171,0 chrI 133361 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.44;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1062,129,0 chrI 133368 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=17.87;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1123,135,0 chrI 133429 . T G 1156 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.78;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1189,147,0 chrI 133640 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.92;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1187,147,0 chrI 133749 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.00;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1353,162,0 chrI 134100 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.49;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1226,153,0 chrI 134190 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.16;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1585,195,0 chrI 134475 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.1796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1839,228,0 chrI 134604 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.480;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.332;QD=17.87;ReadPosRankSum=1.643;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1427,180,0 chrI 135222 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1142,135,0 chrI 135325 . G C 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.57;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1227,153,0 chrI 135417 . T A 1478 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.45;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1511,180,0 chrI 135827 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.1982;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.15;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2713,321,0 chrI 135952 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1178,144,0 chrI 136160 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.88;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2180,261,0 chrI 136961 . T C 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=8.603;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.956;QD=20.74;ReadPosRankSum=0.478;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1236,156,0 chrI 137132 . G T 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=3.436;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.393;QD=17.05;ReadPosRankSum=0.300;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1346,159,0 chrI 137148 . C G 1223 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.68;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1256,153,0 chrI 137167 . C A 1312 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=16.82;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1345,159,0 chrI 137237 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.15;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1739,215,0 chrI 137264 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.799;QD=17.90;ReadPosRankSum=1.699;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1913,234,0 chrI 137336 . A G 1847 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1880,233,0 chrI 138499 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7499;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.67;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:985,117,0 chrI 138650 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=15.52;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1104,138,0 chrI 138806 . A T 929 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.22;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:962,117,0 chrI 139123 . T C 739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.233;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.866;QD=18.47;ReadPosRankSum=1.299;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:96:772,96,0 chrI 139124 . A T 771 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.27;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:804,96,0 chrI 139199 . T C 260 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=19.0405;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=11.30;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:293,36,0 chrI 139277 . T C 359 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=21.6707;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=11.58;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:48:392,48,0 chrI 139692 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.90;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1787,221,0 chrI 140385 . G A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=65;Dels=0.00;FS=4.018;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=15.16;MQ0=43;MQRankSum=2.523;QD=2.08;ReadPosRankSum=1.315;SB=-5.599e+01 GT:AD:DP:GQ:PL 0/1:31,34:65:60:165,0,60 chrI 140418 . G A 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DP=88;Dels=0.00;FS=7.436;HaplotypeScore=6.0991;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=32;MQRankSum=-3.263;QD=3.83;ReadPosRankSum=-0.787;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:41,47:88:99:367,0,359 chrI 140475 . T C 978.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;DP=136;Dels=0.00;FS=15.743;HaplotypeScore=5.8954;MLEAC=1;MLEAF=0.500;MQ=29.59;MQ0=17;MQRankSum=4.193;QD=7.19;ReadPosRankSum=-1.466;SB=-5.240e+02 GT:AD:DP:GQ:PL 0/1:63,73:136:99:1008,0,688 chrI 141030 . T A 1558 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=2;QD=22.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1591,189,0 chrI 141135 . A T 1653 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=2;QD=22.04;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1686,198,0 chrI 141180 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=3;QD=13.69;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1607,198,0 chrI 141184 . G C 1801 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=3;QD=15.53;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1834,225,0 chrI 141342 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=0.207;QD=18.67;ReadPosRankSum=1.700;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2068,254,0 chrI 141510 . G C 2106 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=19.32;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2139,266,0 chrI 141984 . T C 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=2.955;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.679;QD=18.83;ReadPosRankSum=2.333;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:99:824,102,0 chrI 142277 . T A 501 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=12.22;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:66:534,66,0 chrI 142544 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.06;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1781,216,0 chrI 143067 . T C 792 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.6802;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=15.23;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:825,105,0 chrI 143085 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=14.62;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:925,117,0 chrI 143599 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.0937;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=14.09;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1188,141,0 chrI 143638 . C A 1956 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.37;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1989,237,0 chrI 143679 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.85;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2058,252,0 chrI 143781 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.37;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1579,186,0 chrI 143852 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=88;Dels=0.00;FS=5.261;HaplotypeScore=10.0068;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.805;QD=18.85;ReadPosRankSum=2.920;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1692,212,0 chrI 144826 . C G 1185 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.52;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1218,150,0 chrI 145614 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=16.99;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:92:99:1596,198,0 chrI 145634 . T C 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.251;QD=18.83;ReadPosRankSum=1.540;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1389,174,0 chrI 145722 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.20;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1396,174,0 chrI 147468 . C T 822 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.08;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:855,102,0 chrI 147507 . G T 1034 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.00;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1067,129,0 chrI 147607 . T A 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.173;QD=20.41;ReadPosRankSum=2.919;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2299,270,0 chrI 147655 . G C 1610 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.1683;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.40;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1643,206,0 chrI 147726 . A G 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.031;QD=19.57;ReadPosRankSum=-1.417;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1129,138,0 chrI 147759 . T A 979 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.83;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1012,123,0 chrI 148146 . A T 1029 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1062,126,0 chrI 148886 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.62;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1112,132,0 chrI 149307 . T C 881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=56;Dels=0.00;FS=3.979;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.102;QD=15.73;ReadPosRankSum=1.606;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:914,114,0 chrI 149594 . T C 456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=34;Dels=0.00;FS=4.046;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.473;QD=13.41;ReadPosRankSum=1.628;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:60:489,60,0 chrI 149773 . C T 844 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.23;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:877,105,0 chrI 149913 . C A 664 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.95;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:697,84,0 chrI 149973 . A G 837 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:870,108,0 chrI 150303 . G A 872 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.44;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:905,108,0 chrI 150803 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1423,171,0 chrI 150969 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.94;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1510,186,0 chrI 151010 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.06;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1348,162,0 chrI 151332 . A C 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.274;QD=12.79;ReadPosRankSum=1.641;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:63:519,63,0 chrI 151983 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.02;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1098,129,0 chrI 152016 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.20;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1750,207,0 chrI 152155 . A G 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=43;Dels=0.00;FS=7.710;HaplotypeScore=9.1366;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.029;QD=14.84;ReadPosRankSum=2.336;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:84:671,84,0 chrI 152336 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.52;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1144,144,0 chrI 152728 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.27;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1655,198,0 chrI 152932 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1335,165,0 chrI 153013 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.19;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1477,180,0 chrI 153474 . C A 1270 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.41;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1303,156,0 chrI 154503 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.37;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1486,183,0 chrI 155491 . A G 1540 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.56;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1573,195,0 chrI 155541 . A G 1791 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1824,227,0 chrI 156293 . T A 1107 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=18.45;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1140,135,0 chrI 156314 . T C 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=73;Dels=0.00;FS=6.113;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.958;QD=15.95;ReadPosRankSum=2.903;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:3,69:73:99:1197,150,0 chrI 156347 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=15.49;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1381,171,0 chrI 156383 . T G 1073 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=14.31;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1106,138,0 chrI 156393 . G T 792 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=12.77;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:825,102,0 chrI 156394 . G A 684 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=11.21;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:87:717,87,0 chrI 156515 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=13.89;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1005,117,0 chrI 156518 . T C 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.490;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=-0.543;QD=13.91;ReadPosRankSum=1.525;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:965,120,0 chrI 156538 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=-1.048;QD=13.75;ReadPosRankSum=1.687;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1078,132,0 chrI 156554 . C A 1062 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.17;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1095,129,0 chrI 156584 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=83;Dels=0.00;FS=2.970;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-2.179;QD=12.78;ReadPosRankSum=2.390;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1094,132,0 chrI 156651 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=16.15;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1567,200,0 chrI 156949 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9860;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.754;QD=17.89;ReadPosRankSum=2.155;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1679,190,0 chrI 157099 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.36;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1682,201,0 chrI 157114 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-2.194;QD=17.30;ReadPosRankSum=1.451;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1867,233,0 chrI 157134 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=16.69;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1669,201,0 chrI 157428 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.39;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1233,147,0 chrI 157462 . A C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.103;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.815;QD=20.81;ReadPosRankSum=1.681;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1448,180,0 chrI 157912 . C G 1246 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1279,162,0 chrI 158089 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.94;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:984,123,0 chrI 158380 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.08;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1606,195,0 chrI 158597 . C T 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.331;QD=18.01;ReadPosRankSum=0.097;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1654,198,0 chrI 158641 . C T 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.8846;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.282;QD=17.32;ReadPosRankSum=1.351;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1800,197,0 chrI 158870 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.11;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2081,257,0 chrI 159623 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.30;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2083,246,0 chrI 159724 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5136;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.28;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1733,215,0 chrI 159757 . T G 1693 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5907;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.01;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1726,215,0 chrI 159894 . G A 2812 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.38;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2845,344,0 chrI 160234 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=15.72;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:662,78,0 chrI 166111 . A G 287 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.63;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:320,39,0 chrI 166116 . T C 277 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.43;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:310,39,0 chrI 166118 . A G 284 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.57;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:317,39,0 chrI 166120 . G T 293 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.75;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:326,39,0 chrI 166122 . A T 300 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.88;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:333,39,0 chrI 166128 . T A 290 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.69;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:323,39,0 chrI 166130 . G A 297 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.82;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:330,39,0 chrI 166133 . A G 283 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.55;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:316,39,0 chrI 166134 . G A 296 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.80;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:329,39,0 chrI 166136 . A C 297 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.82;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:330,39,0 chrI 166139 . T A 294 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=5.76;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:39:327,39,0 chrI 166245 . A T 3383.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=6.047;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.871;QD=20.50;ReadPosRankSum=1.543;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,164:165:99:3383,404,0 chrI 166369 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.81;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1422,177,0 chrI 166420 . T A 1643 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=19.10;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1676,201,0 chrI 166429 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=18.26;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1567,195,0 chrI 166443 . G C 1608 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=17.11;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1641,201,0 chrI 166571 . G A 4059.01 PASS AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.19;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,201:201:99:4059,480,0 chrI 166733 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.16;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2102,260,0 chrI 166820 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.13;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1523,186,0 chrI 166931 . A G 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.071;QD=17.34;ReadPosRankSum=1.669;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1958,242,0 chrI 167064 . C T 1551 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.16;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1584,192,0 chrI 167179 . T C 1307 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.43;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1340,170,0 chrI 168173 . A G 1075 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=15.58;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1108,135,0 chrI 169476 . T C 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=1.299;QD=17.27;ReadPosRankSum=1.660;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:862,105,0 chrI 169638 . T C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.132;HaplotypeScore=7.1041;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.732;QD=18.81;ReadPosRankSum=1.700;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2102,258,0 chrI 170564 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.75;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1239,147,0 chrI 171927 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.31;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1095,132,0 chrI 172027 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.72;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1153,141,0 chrI 172113 . C A 1731 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.67;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1764,213,0 chrI 172129 . A T 1593 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.43;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1626,195,0 chrI 172155 . A G 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.619;QD=17.96;ReadPosRankSum=1.650;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1542,189,0 chrI 172431 . A T 1033 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.51;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1066,126,0 chrI 172585 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.46;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1663,201,0 chrI 173027 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.41;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1547,192,0 chrI 173222 . A C 1952 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.55;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1985,248,0 chrI 173342 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.58;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1457,180,0 chrI 173960 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.89;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1697,201,0 chrI 174371 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.52;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1767,216,0 chrI 175307 . T A 1873 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.92;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1906,225,0 chrI 175311 . C G 1827 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.64;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1860,225,0 chrI 175318 . C G 1976 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.56;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2009,243,0 chrI 175409 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=3.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.510;QD=18.62;ReadPosRankSum=2.400;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1876,236,0 chrI 175457 . A T 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.0479;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.07;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2181,258,0 chrI 175523 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.2905;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.55;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2535,303,0 chrI 175573 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.2547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.67;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2275,267,0 chrI 175876 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.35;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1426,168,0 chrI 175963 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.291;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-1.353;QD=21.06;ReadPosRankSum=1.678;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1402,174,0 chrI 176001 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.65;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1396,174,0 chrI 176015 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.36;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1098,135,0 chrI 176220 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.98;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1267,156,0 chrI 176266 . A T 559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=27.4306;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.245;QD=15.53;ReadPosRankSum=2.301;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,34:36:72:592,72,0 chrI 176295 . G A 368 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=19.37;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:48:401,48,0 chrI 176304 . C T 294 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.37;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:327,39,0 chrI 176431 . A G 923 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.151;QD=20.07;ReadPosRankSum=1.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:99:956,120,0 chrI 176694 . A G 792 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=1;QD=18.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:43:99:825,105,0 chrI 176721 . G A 603 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=1;QD=18.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:78:636,78,0 chrI 176847 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.26;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1310,156,0 chrI 176858 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.85;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1443,180,0 chrI 176948 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=1;QD=17.59;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1774,219,0 chrI 177100 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.91;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1394,168,0 chrI 177116 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=16.60;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1112,138,0 chrI 177281 . C G 1244 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=14.81;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1277,162,0 chrI 177667 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.416;HaplotypeScore=6.8307;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.218;QD=18.78;ReadPosRankSum=1.698;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1949,240,0 chrI 177726 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.12;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1243,150,0 chrI 177857 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.97;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1247,147,0 chrI 177911 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.04;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2215,261,0 chrI 178024 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.06;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1415,168,0 chrI 178032 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.26;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1379,162,0 chrI 178060 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=15.92;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1211,147,0 chrI 178182 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.78;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1349,162,0 chrI 178237 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.74;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1523,186,0 chrI 178266 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=15.78;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1343,165,0 chrI 178270 . A C 1155 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=14.62;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1188,147,0 chrI 178389 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=16.24;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1511,180,0 chrI 178448 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=10.56;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:93:793,93,0 chrI 178475 . T A 777 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=11.77;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:810,96,0 chrI 178541 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.96;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1811,230,0 chrI 178563 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.82;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1648,206,0 chrI 178579 . A T 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=6.990;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.431;QD=14.62;ReadPosRankSum=2.401;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1495,180,0 chrI 178654 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=16.30;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1337,159,0 chrI 178674 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=15.64;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1284,156,0 chrI 178705 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.02;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1616,195,0 chrI 179221 . A G 833 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4301;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=15.15;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:866,111,0 chrI 179386 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.83;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,126,0 chrI 179706 . C G 1812 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.106;DP=98;Dels=0.00;FS=4.727;HaplotypeScore=4.4839;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=0.389;QD=18.49;ReadPosRankSum=1.308;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1845,228,0 chrI 179708 . A C 1784 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=4.4839;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=0.758;QD=18.58;ReadPosRankSum=1.371;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1817,227,0 chrI 179709 . T C 1736 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6952;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.47;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1769,221,0 chrI 179784 . C A 1363 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.65;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1396,165,0 chrI 179823 . T C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=88;Dels=0.00;FS=8.578;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.105;QD=18.82;ReadPosRankSum=3.233;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:4,83:88:99:1689,210,0 chrI 179942 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=15.70;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1854,222,0 chrI 179951 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.538;QD=16.19;ReadPosRankSum=1.672;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1911,236,0 chrI 179996 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.093;QD=13.21;ReadPosRankSum=2.335;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1447,180,0 chrI 180049 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.25;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1551,186,0 chrI 180069 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-1.393;QD=18.06;ReadPosRankSum=2.386;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1424,174,0 chrI 180197 . G A 773 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.57;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:806,96,0 chrI 180432 . G T 269.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=62;Dels=0.00;FS=149.662;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=-0.605;QD=4.35;ReadPosRankSum=-5.767;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:42,20:62:2:299,2,0 chrI 180592 . A G 789 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=21.92;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:822,105,0 chrI 180646 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=21.19;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:817,96,0 chrI 180652 . A C 784 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=19.60;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:817,102,0 chrI 180697 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=20.17;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1344,165,0 chrI 180747 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;MQRankSum=0.663;QD=19.50;ReadPosRankSum=1.695;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1866,231,0 chrI 180787 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=15.89;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1082,129,0 chrI 180818 . C A 563 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=11.04;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:596,72,0 chrI 180822 . T A 524 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=37.1781;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;QD=8.45;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:69:557,69,0 chrI 180835 . T C 382 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.47;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:51:415,51,0 chrI 180842 . A G 382 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.26;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:51:415,51,0 chrI 180844 . A T 368 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=5.84;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:48:401,48,0 chrI 180906 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.00;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1257,147,0 chrI 180934 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.47;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1609,192,0 chrI 180953 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.68;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1341,165,0 chrI 181013 . T C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=6.428;HaplotypeScore=11.1015;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.240;QD=15.36;ReadPosRankSum=2.322;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1231,153,0 chrI 181117 . G A 961 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=18.48;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:994,120,0 chrI 181118 . T C 930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.102;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;MQRankSum=-0.513;QD=17.22;ReadPosRankSum=1.604;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:963,120,0 chrI 181119 . G A 954 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=17.67;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:987,120,0 chrI 181197 . G T 961 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=1;QD=16.02;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:994,120,0 chrI 181377 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.37;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1520,183,0 chrI 181556 . A G 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=65;Dels=0.00;FS=4.914;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.565;QD=17.65;ReadPosRankSum=1.621;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,61:65:99:1180,150,0 chrI 181749 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.50;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1593,186,0 chrI 182045 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=61.42;MQ0=0;QD=21.05;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1780,224,0 chrI 182141 . G T 1173 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.62;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1206,144,0 chrI 182184 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=14.37;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:881,105,0 chrI 182210 . T A 1103 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.51;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1136,135,0 chrI 182339 . C A 1161 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.73;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1194,141,0 chrI 182380 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.67;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1732,204,0 chrI 182520 . A G 499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;MQRankSum=0.683;QD=15.59;ReadPosRankSum=0.683;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:2,29:32:66:532,66,0 chrI 182605 . A T 512 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=15.52;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:545,66,0 chrI 182663 . C T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.76;MQ0=1;QD=5.29;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:1,2:3:6:47,6,0 chrI 183270 . T C 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=1;MQRankSum=0.593;QD=17.73;ReadPosRankSum=1.687;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1398,171,0 chrI 183331 . G T 811 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=15.60;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:844,105,0 chrI 183353 . C T 660 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=13.47;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:84:693,84,0 chrI 183545 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=3;QD=14.09;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1301,162,0 chrI 183596 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=16.53;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1537,186,0 chrI 183650 . G A 593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=2.451;QD=15.21;ReadPosRankSum=-1.186;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:3,36:39:65:626,65,0 chrI 183662 . T C 380 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=20.00;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:413,54,0 chrI 183675 . C T 271 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=20.85;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:39:304,39,0 chrI 183689 . T A 216 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=18.00;SB=-1.149e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:249,33,0 chrI 183712 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=4.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:50,6,0 chrI 183802 . G A 67.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=5.19;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:100,12,0 chrI 183811 . T A 71.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.740;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=0.185;QD=5.96;ReadPosRankSum=-0.740;SB=2.49 GT:AD:DP:GQ:PL 1/1:3,9:12:12:104,12,0 chrI 183815 . G A 91.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=7.61;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:124,15,0 chrI 183823 . C T 113.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=7.54;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:146,18,0 chrI 183835 . A G 143.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;MQRankSum=-1.734;QD=7.53;ReadPosRankSum=1.552;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:21:176,21,0 chrI 183859 . A T 188.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;MQRankSum=1.456;QD=7.52;ReadPosRankSum=1.595;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:1,24:25:27:221,27,0 chrI 183860 . G A 172.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;MQRankSum=0.711;QD=7.19;ReadPosRankSum=-0.071;SB=0.463 GT:AD:DP:GQ:PL 1/1:5,19:24:4:203,4,0 chrI 183865 . T A 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=8.61;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:274,33,0 chrI 183867 . C T 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=8.36;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:267,33,0 chrI 183873 . A G 173.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=1.761;QD=5.97;ReadPosRankSum=1.068;SB=-1.746e-01 GT:AD:DP:GQ:PL 0/1:5,24:29:11:203,0,11 chrI 183890 . A G 302.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.208;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.5909;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;MQRankSum=2.430;QD=7.74;ReadPosRankSum=0.208;SB=-2.741e-02 GT:AD:DP:GQ:PL 1/1:4,35:39:26:335,26,0 chrI 183894 . T C 317.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.861;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.5620;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;MQRankSum=1.491;QD=8.13;ReadPosRankSum=0.945;SB=3.95 GT:AD:DP:GQ:PL 1/1:5,34:39:26:350,26,0 chrI 183896 . A T 319 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=12.6078;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=8.18;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:45:352,45,0 chrI 183904 . C G 352 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.6520;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=9.03;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:48:385,48,0 chrI 183912 . G A 387 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=9.44;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:51:420,51,0 chrI 183918 . C T 323.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;MQRankSum=2.461;QD=8.97;ReadPosRankSum=0.801;SB=-2.785e-02 GT:AD:DP:GQ:PL 1/1:3,33:36:26:356,26,0 chrI 183920 . C A 343 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=9.53;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:376,45,0 chrI 183923 . A G 345 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=23.2181;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=9.58;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:48:378,48,0 chrI 183929 . A G 301.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.678;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=28.0718;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;MQRankSum=2.686;QD=9.12;ReadPosRankSum=2.184;SB=-1.454e-02 GT:AD:DP:GQ:PL 1/1:5,28:33:26:334,26,0 chrI 183952 . G A 237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=7.90;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:270,33,0 chrI 183955 . T C 236 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;MQRankSum=1.362;QD=8.14;ReadPosRankSum=-1.733;SB=-1.086e-02 GT:AD:DP:GQ:PL 1/1:2,27:29:33:269,33,0 chrI 183956 . T C 237 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.8867;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=8.46;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:270,33,0 chrI 183962 . A T 220 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=1.362;QD=7.86;ReadPosRankSum=-1.733;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:30:253,30,0 chrI 183965 . A C 88.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;MQRankSum=-0.771;QD=4.65;ReadPosRankSum=1.542;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:1,17:19:15:121,15,0 chrI 183966 . C T 90.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;MQRankSum=1.349;QD=5.01;ReadPosRankSum=-1.735;SB=-2.674e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:123,15,0 chrI 183967 . G A 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=3.92;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:103,12,0 chrI 184149 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=1.13;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:47,6,0 chrI 184150 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=1.27;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrI 184151 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=1.20;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:48,6,0 chrI 184153 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=0;QD=1.41;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:51,6,0 chrI 184156 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=0.93;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:47,6,0 chrI 184168 . C T 64.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;QD=2.69;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:12:97,12,0 chrI 184177 . G T 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;QD=3.27;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:15:121,15,0 chrI 184184 . C G 83.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.20;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:116,15,0 chrI 184186 . T A 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:124,15,0 chrI 184189 . G A 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:124,15,0 chrI 184190 . A C 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=3.24;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:117,15,0 chrI 184196 . C T 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=2.51;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,36:36:15:123,15,0 chrI 184204 . G A 112.13 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=2.80;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:18:145,18,0 chrI 184213 . T C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.38;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:99,12,0 chrI 184215 . T A 64.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=8.8708;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=1.114;QD=2.30;ReadPosRankSum=0.371;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:97,12,0 chrI 184216 . T C 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=9.8373;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.20;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:28:12:94,12,0 chrI 184221 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=11.7703;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.495;QD=2.27;ReadPosRankSum=0.124;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:96,12,0 chrI 184222 . A T 67.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.238;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=11.7703;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.248;QD=2.41;ReadPosRankSum=-0.248;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:100,12,0 chrI 184224 . A G 59.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=11.7703;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.867;QD=2.13;ReadPosRankSum=0.000;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:92,12,0 chrI 184225 . T A 64.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=12.7552;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.193;QD=2.30;ReadPosRankSum=-0.193;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,26:27:12:97,12,0 chrI 184227 . G A 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=12.7424;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.27;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:96,12,0 chrI 184228 . G A 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=12.7375;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.34;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:98,12,0 chrI 184234 . T G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.8554;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=1.76;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:94,12,0 chrI 184235 . A T 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=1.90;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:99,12,0 chrI 184237 . A T 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=1.79;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:95,12,0 chrI 184246 . A T 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=2.61;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:124,15,0 chrI 184248 . G A 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=8.9090;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=2.61;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:124,15,0 chrI 184253 . A G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=8.9090;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=1.86;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:94,12,0 chrI 184274 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.76;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:47,6,0 chrI 184280 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.94;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:51,6,0 chrI 184281 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.76;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:47,6,0 chrI 184282 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.85;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:49,6,0 chrI 184288 . A G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:46,6,0 chrI 184291 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,23:23:6:49,6,0 chrI 184299 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.62;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,27:27:6:48,6,0 chrI 184302 . C A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.83;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,24:24:6:51,6,0 chrI 184316 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.86;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:50,6,0 chrI 184319 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.77;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:48,6,0 chrI 184418 . C A 265 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=6.97;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:36:298,36,0 chrI 184422 . A G 269 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=6.72;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:36:302,36,0 chrI 184481 . C A 253 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=5.75;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:36:286,36,0 chrI 184488 . T C 343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;MQRankSum=0.303;QD=7.62;ReadPosRankSum=2.231;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:48:376,48,0 chrI 184492 . T C 289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=-1.450;QD=5.90;ReadPosRankSum=1.591;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:42:322,42,0 chrI 184509 . C G 614 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=10.23;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:81:647,81,0 chrI 184510 . T C 675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;MQRankSum=-1.453;QD=10.89;ReadPosRankSum=1.676;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:90:708,90,0 chrI 184921 . A T 3332.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.8735;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.15;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3332,407,0 chrI 185159 . A G 1730 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.6945;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.80;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1763,219,0 chrI 185480 . T G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=4.595;HaplotypeScore=9.6968;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.389;QD=17.41;ReadPosRankSum=1.675;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2140,261,0 chrI 185879 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.63;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1504,180,0 chrI 186161 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171;DP=76;Dels=0.00;FS=48.926;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=51.39;MQ0=0;MQRankSum=-6.328;QD=0.14;ReadPosRankSum=1.378;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,27:76:40:40,0,809 chrI 186342 . C T 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.311;DP=114;Dels=0.00;FS=62.024;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=7.944;QD=11.39;ReadPosRankSum=1.545;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:32,82:114:39:1331,39,0 chrI 186377 . C T 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.980;DP=139;Dels=0.00;FS=17.842;HaplotypeScore=9.6333;MLEAC=1;MLEAF=0.500;MQ=50.79;MQ0=0;MQRankSum=-9.336;QD=0.52;ReadPosRankSum=-1.971;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:94,44:139:99:102,0,1609 chrI 186392 . C T 104.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.756;DP=137;Dels=0.00;FS=9.594;HaplotypeScore=7.9737;MLEAC=1;MLEAF=0.500;MQ=49.36;MQ0=0;MQRankSum=-8.940;QD=0.76;ReadPosRankSum=-2.014;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:87,50:137:99:134,0,1549 chrI 186396 . C T 154.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;DP=140;Dels=0.00;FS=0.701;HaplotypeScore=8.8059;MLEAC=1;MLEAF=0.500;MQ=48.77;MQ0=0;MQRankSum=-9.567;QD=1.10;ReadPosRankSum=-0.998;SB=-1.520e+02 GT:AD:DP:GQ:PL 0/1:88,52:140:99:184,0,1353 chrI 186397 . T A 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3832;MLEAC=1;MLEAF=0.500;MQ=48.74;MQ0=0;MQRankSum=-9.057;QD=1.21;ReadPosRankSum=-0.575;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:90,52:142:99:202,0,1481 chrI 186406 . G A 306.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.959;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-8.655;QD=2.01;ReadPosRankSum=0.205;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:87,65:152:99:336,0,1436 chrI 186417 . G A 1209.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.667;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=0;MQRankSum=7.037;QD=8.22;ReadPosRankSum=-1.169;SB=-3.110e+02 GT:AD:DP:GQ:PL 0/1:70,76:147:99:1239,0,550 chrI 186504 . G C 2000 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=17.24;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2033,251,0 chrI 186505 . A C 1997 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=16.92;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2030,251,0 chrI 186754 . G A 903.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;DP=178;Dels=0.00;FS=1.174;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=43.26;MQ0=0;MQRankSum=3.997;QD=5.07;ReadPosRankSum=-0.929;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:96,81:178:99:933,0,1285 chrI 186792 . T C 636.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.403;DP=163;Dels=0.00;FS=14.015;HaplotypeScore=6.5111;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=0;MQRankSum=-3.894;QD=3.90;ReadPosRankSum=1.035;SB=-6.010e+02 GT:AD:DP:GQ:PL 0/1:86,77:163:99:666,0,1196 chrI 186794 . A G 1108.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.643;DP=167;Dels=0.00;FS=15.353;HaplotypeScore=4.9338;MLEAC=1;MLEAF=0.500;MQ=39.87;MQ0=0;MQRankSum=2.014;QD=6.63;ReadPosRankSum=-0.827;SB=-3.940e+02 GT:AD:DP:GQ:PL 0/1:81,86:167:99:1138,0,703 chrI 186797 . A G 617.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.787;DP=166;Dels=0.00;FS=21.210;HaplotypeScore=5.9003;MLEAC=1;MLEAF=0.500;MQ=39.08;MQ0=0;MQRankSum=-3.887;QD=3.72;ReadPosRankSum=1.242;SB=-5.920e+02 GT:AD:DP:GQ:PL 0/1:87,79:166:99:647,0,1282 chrI 186807 . C T 649.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.572;DP=163;Dels=0.00;FS=26.450;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=39.18;MQ0=0;MQRankSum=-5.962;QD=3.98;ReadPosRankSum=0.962;SB=-6.840e+02 GT:AD:DP:GQ:PL 0/1:80,81:163:99:679,0,1116 chrI 186816 . C G 605.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;DP=156;Dels=0.00;FS=32.586;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=0;MQRankSum=-5.080;QD=3.88;ReadPosRankSum=1.085;SB=-6.040e+02 GT:AD:DP:GQ:PL 0/1:77,79:156:99:635,0,1070 chrI 186819 . T C 2060 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=13.55;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2093,263,0 chrI 186857 . T C 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=5.576;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=-0.933;QD=13.30;ReadPosRankSum=1.705;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1762,216,0 chrI 186867 . C A 754.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=128;Dels=0.00;FS=38.407;HaplotypeScore=110.7051;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=0;MQRankSum=-2.299;QD=5.89;ReadPosRankSum=0.890;SB=-5.350e+02 GT:AD:DP:GQ:PL 0/1:54,74:128:99:784,0,571 chrI 186907 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=15.98;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2127,261,0 chrI 186936 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1960;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=16.37;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2309,284,0 chrI 186963 . C A 1762 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=15.87;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1795,219,0 chrI 186974 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=13.53;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1589,189,0 chrI 186987 . G A 562.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.657;DP=110;Dels=0.00;FS=86.002;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=36.98;MQ0=0;MQRankSum=0.084;QD=5.11;ReadPosRankSum=2.099;SB=-6.110e+02 GT:AD:DP:GQ:PL 0/1:43,66:110:99:592,0,522 chrI 186990 . G C 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=12.62;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1371,168,0 chrI 186998 . G A 315.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;DP=89;Dels=0.00;FS=69.169;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=0;MQRankSum=-2.280;QD=3.54;ReadPosRankSum=0.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,27:89:99:345,0,514 chrI 187000 . G C 325.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DP=87;Dels=0.00;FS=74.587;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=41.20;MQ0=0;MQRankSum=-3.406;QD=3.74;ReadPosRankSum=-0.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,27:87:99:355,0,528 chrI 187001 . A T 293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.473;DP=88;Dels=0.00;FS=73.412;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=41.08;MQ0=0;MQRankSum=-4.142;QD=3.33;ReadPosRankSum=-0.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,27:88:99:323,0,571 chrI 187003 . G T 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.006;DP=85;Dels=0.00;FS=65.992;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=42.22;MQ0=0;MQRankSum=-3.950;QD=3.62;ReadPosRankSum=-0.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,28:85:99:338,0,521 chrI 187016 . C T 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.829;DP=81;Dels=0.00;FS=101.162;HaplotypeScore=7.3361;MLEAC=1;MLEAF=0.500;MQ=43.55;MQ0=0;MQRankSum=-4.585;QD=1.77;ReadPosRankSum=0.138;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,25:81:99:173,0,597 chrI 187027 . A G 111.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430;DP=84;Dels=0.00;FS=106.883;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=45.18;MQ0=0;MQRankSum=-4.855;QD=1.32;ReadPosRankSum=-0.335;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,27:84:99:141,0,690 chrI 187030 . A C 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;DP=88;Dels=0.00;FS=103.882;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=0;MQRankSum=-4.841;QD=1.34;ReadPosRankSum=0.814;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,27:88:99:148,0,795 chrI 187031 . T C 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.593;DP=92;Dels=0.00;FS=109.070;HaplotypeScore=8.0813;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-4.965;QD=1.32;ReadPosRankSum=1.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,27:92:99:151,0,803 chrI 187062 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=12.89;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1464,180,0 chrI 187090 . T C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.516;DP=101;Dels=0.00;FS=61.089;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=48.92;MQ0=0;MQRankSum=-2.721;QD=1.25;ReadPosRankSum=1.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,39:101:99:156,0,1036 chrI 187094 . A G 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DP=102;Dels=0.00;FS=56.730;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=48.20;MQ0=0;MQRankSum=-3.367;QD=1.71;ReadPosRankSum=1.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,39:102:99:204,0,1085 chrI 187111 . C T 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=104;Dels=0.00;FS=36.047;HaplotypeScore=3.4826;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=0;MQRankSum=-1.883;QD=0.84;ReadPosRankSum=0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,39:104:99:117,0,1051 chrI 187379 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=19.63;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1525,180,0 chrI 187515 . G A 620 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=11.92;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:78:653,78,0 chrI 187524 . A G 450 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.47;MQ0=0;QD=9.78;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:483,60,0 chrI 187528 . G A 431 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=10.51;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:54:464,54,0 chrI 187530 . A C 379 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.47;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:412,51,0 chrI 187532 . A G 363 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.07;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:48:396,48,0 chrI 187535 . G A 389 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.72;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:422,51,0 chrI 187537 . A G 382 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.55;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:415,51,0 chrI 187539 . C T 393 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=9.82;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:426,51,0 chrI 187555 . T G 319 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.79;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:352,42,0 chrI 187557 . A T 313 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.66;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:346,42,0 chrI 187558 . A G 307 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.53;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:340,42,0 chrI 187561 . C T 317 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.74;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:350,42,0 chrI 187563 . C G 292 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.21;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:39:325,39,0 chrI 187568 . T C 295 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.28;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:328,42,0 chrI 187569 . C G 312 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.64;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:42:345,42,0 chrI 187680 . T C 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=1.22;SB=-6.573e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:15:127,15,0 chrI 187681 . T C 119.13 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=1.55;SB=-6.631e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:18:152,18,0 chrI 187685 . A G 130.06 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=1.61;SB=-6.791e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:21:163,21,0 chrI 187687 . G C 129.06 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=1.59;SB=-6.771e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:21:162,21,0 chrI 187734 . C T 281 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=1;QD=4.93;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:39:314,39,0 chrI 187750 . C T 481 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=1;QD=8.02;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:60:514,60,0 chrI 187774 . G C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=2.47;SB=-4.798e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:74,9,0 chrI 187775 . G T 57.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=3.38;SB=-4.952e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:90,12,0 chrI 187777 . A C 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=2.06;SB=-5.198e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:67,9,0 chrI 187786 . T C 224 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=12.44;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:257,33,0 chrI 187791 . T G 227 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=5.04;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:33:260,33,0 chrI 187797 . C A 276 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=6.00;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:36:309,36,0 chrI 187799 . A G 278 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=5.67;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:39:311,39,0 chrI 187802 . C T 331 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=32.00;MQ0=0;QD=6.02;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:45:364,45,0 chrI 188048 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=1;QD=14.93;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:660,78,0 chrI 188063 . C T 607 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=1;QD=12.65;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:640,75,0 chrI 188086 . A G 523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=1;MQRankSum=0.505;QD=10.67;ReadPosRankSum=1.660;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:69:556,69,0 chrI 188148 . A G 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=2;MQRankSum=0.685;QD=15.27;ReadPosRankSum=1.652;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:90:720,90,0 chrI 188151 . T C 609 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=3;QD=14.16;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:642,81,0 chrI 188190 . T C 650 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=5;QD=14.13;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:683,84,0 chrI 188529 . G A 1327 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1654;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=5;QD=12.29;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1360,159,0 chrI 188593 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.786;DP=104;Dels=0.00;FS=19.307;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=4;MQRankSum=-2.551;QD=0.35;ReadPosRankSum=-2.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,51:104:66:66,0,900 chrI 188602 . G A 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.453;DP=92;Dels=0.00;FS=15.398;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=3;MQRankSum=-2.655;QD=0.33;ReadPosRankSum=-2.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,41:92:60:60,0,848 chrI 188603 . T A 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.775;DP=93;Dels=0.00;FS=15.275;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=3;MQRankSum=-2.447;QD=0.37;ReadPosRankSum=-2.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,41:93:64:64,0,855 chrI 188607 . C T 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;DP=85;Dels=0.00;FS=15.904;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=3;MQRankSum=-2.708;QD=0.44;ReadPosRankSum=-4.452;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,41:85:67:67,0,716 chrI 188608 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;DP=85;Dels=0.00;FS=15.904;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=3;MQRankSum=-2.114;QD=0.51;ReadPosRankSum=-4.452;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,41:85:73:73,0,734 chrI 188609 . C T 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.068;DP=84;Dels=0.00;FS=19.271;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=3;MQRankSum=-3.273;QD=0.57;ReadPosRankSum=-4.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,41:84:78:78,0,691 chrI 188658 . G A 419 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=2;QD=11.97;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:54:452,54,0 chrI 188659 . C A 405 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=2;QD=11.57;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:51:438,51,0 chrI 188799 . A G 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;DP=147;Dels=0.00;FS=1.555;HaplotypeScore=4.1905;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=12;MQRankSum=7.532;QD=8.18;ReadPosRankSum=0.462;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:57,90:147:99:1232,0,147 chrI 188881 . G C 761.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;DP=124;Dels=0.00;FS=3.496;HaplotypeScore=6.5608;MLEAC=1;MLEAF=0.500;MQ=35.75;MQ0=2;MQRankSum=-4.336;QD=6.14;ReadPosRankSum=2.143;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:56,65:124:99:791,0,719 chrI 188939 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4815;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=15.83;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1822,222,0 chrI 189066 . T C 70.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=2;QD=3.07;SB=-7.149e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:103,12,0 chrI 189098 . C G 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DP=37;Dels=0.00;FS=12.108;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=4;MQRankSum=-1.730;QD=2.43;ReadPosRankSum=0.055;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:17,20:37:63:120,0,63 chrI 189208 . G A 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=29.32;MQ0=5;MQRankSum=-1.310;QD=1.68;ReadPosRankSum=-0.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,31:66:99:141,0,270 chrI 189219 . A G 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=5;MQRankSum=0.802;QD=3.02;ReadPosRankSum=2.048;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,26:56:99:199,0,149 chrI 189245 . A G 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565;DP=72;Dels=0.00;FS=4.498;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=6;MQRankSum=-6.703;QD=3.04;ReadPosRankSum=0.534;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:36,35:72:99:249,0,536 chrI 189392 . C T 334.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=2;MQRankSum=-3.005;QD=6.55;ReadPosRankSum=0.211;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:27,24:51:99:364,0,463 chrI 189482 . T A 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DP=94;Dels=0.00;FS=7.955;HaplotypeScore=5.7544;MLEAC=1;MLEAF=0.500;MQ=42.19;MQ0=4;MQRankSum=-5.206;QD=1.88;ReadPosRankSum=1.520;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:61,33:94:99:207,0,964 chrI 189539 . C T 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.121;DP=149;Dels=0.00;FS=19.928;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=45.69;MQ0=15;MQRankSum=-7.714;QD=0.93;ReadPosRankSum=0.980;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:97,52:149:99:169,0,1762 chrI 189639 . T G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;DP=98;Dels=0.00;FS=87.183;HaplotypeScore=3.4380;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=2;MQRankSum=-3.032;QD=0.59;ReadPosRankSum=0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,21:98:88:88,0,880 chrI 189669 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=2;QD=11.41;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1197,144,0 chrI 189687 . T G 638.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.068;DP=93;Dels=0.00;FS=82.147;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=1;MQRankSum=0.674;QD=6.86;ReadPosRankSum=0.010;SB=-3.580e+02 GT:AD:DP:GQ:PL 0/1:18,75:93:96:668,0,96 chrI 189689 . C T 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;DP=91;Dels=0.00;FS=83.137;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=1;MQRankSum=-0.278;QD=0.75;ReadPosRankSum=-0.320;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,18:91:98:98,0,653 chrI 189690 . G A 879 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=1;MQRankSum=1.347;QD=9.66;ReadPosRankSum=-1.463;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:912,108,0 chrI 189697 . A C 577.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873;DP=86;Dels=0.00;FS=81.362;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=1;MQRankSum=1.005;QD=6.71;ReadPosRankSum=1.522;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:18,68:86:99:607,0,117 chrI 189700 . T A 588.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;DP=91;Dels=0.00;FS=61.503;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=1.250;QD=6.46;ReadPosRankSum=1.358;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:19,72:91:99:618,0,108 chrI 189729 . C A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DP=92;Dels=0.00;FS=58.027;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=-1.059;QD=0.30;ReadPosRankSum=-1.697;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,11:92:58:58,0,539 chrI 189735 . T C 598 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=7.77;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:78:631,78,0 chrI 189736 . C A 598 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=7.77;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:75:631,75,0 chrI 189740 . A G 506 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=55.9502;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;MQRankSum=1.327;QD=6.57;ReadPosRankSum=1.687;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:66:539,66,0 chrI 189817 . T A 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=47.1985;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=1.57;SB=-5.923e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:15:130,15,0 chrI 189821 . C A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=53;Dels=0.00;FS=13.645;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;MQRankSum=1.061;QD=0.75;ReadPosRankSum=-1.970;SB=2.03 GT:AD:DP:GQ:PL 1/1:49,4:53:9:72,9,0 chrI 189825 . G T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=1.71;SB=-6.333e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:15:127,15,0 chrI 189934 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=15.51;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:948,114,0 chrI 189954 . A G 907 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.91;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:940,117,0 chrI 190122 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=12.54;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1099,132,0 chrI 190429 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.8764;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.75;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1293,156,0 chrI 190558 . T A 811 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3281;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=13.30;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:844,105,0 chrI 190588 . T C 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=74;Dels=0.00;FS=2.824;HaplotypeScore=9.5184;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.886;QD=14.47;ReadPosRankSum=2.276;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:2,69:74:99:1104,135,0 chrI 190621 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.496;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.121;QD=13.37;ReadPosRankSum=1.691;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1183,150,0 chrI 190636 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=13.10;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1212,153,0 chrI 191617 . T C 656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.380;QD=15.62;ReadPosRankSum=1.648;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:84:689,84,0 chrI 191697 . G C 659 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=9.69;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:84:692,84,0 chrI 191704 . G C 814 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3213;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=10.71;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:847,105,0 chrI 191755 . A G 672 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=11.02;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:87:705,87,0 chrI 191818 . G T 1218 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.46;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1251,150,0 chrI 191866 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=15.01;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1759,218,0 chrI 192170 . A G 739 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=14.78;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:93:772,93,0 chrI 192196 . A G 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2316;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.662;QD=14.38;ReadPosRankSum=1.681;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1025,129,0 chrI 192429 . G C 450 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=15.52;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:60:483,60,0 chrI 192531 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.94;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:912,108,0 chrI 192723 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.67;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:775,93,0 chrI 192795 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4281;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.95;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1511,183,0 chrI 193149 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.13;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1850,219,0 chrI 193191 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.361;QD=17.94;ReadPosRankSum=1.701;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2042,251,0 chrI 193260 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.26;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2075,255,0 chrI 193329 . T G 1662 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.26;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1695,210,0 chrI 194011 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=14.5915;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.25;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:83:99:1465,177,0 chrI 194101 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=15.43;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1175,150,0 chrI 194104 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=15.44;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1160,141,0 chrI 194166 . T C 395 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=8.06;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:54:428,54,0 chrI 194169 . T C 390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;MQRankSum=-0.433;QD=8.12;ReadPosRankSum=1.660;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:54:423,54,0 chrI 194626 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.29;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1036,123,0 chrI 194781 . A G 752 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.09;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:785,99,0 chrI 194803 . G A 723 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=16.07;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:756,90,0 chrI 194818 . G A 616 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=11.62;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:649,78,0 chrI 194831 . A G 654 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=11.68;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:687,84,0 chrI 195189 . A G 1653 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.45;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1686,210,0 chrI 195324 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.2493;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.10;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1555,186,0 chrI 195459 . T C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=4.160;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.322;QD=17.73;ReadPosRankSum=1.692;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1558,197,0 chrI 195585 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.53;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:86:99:1455,182,0 chrI 195677 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=19.37;ReadPosRankSum=1.602;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1602,198,0 chrI 195910 . A G 775 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=15.20;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:808,99,0 chrI 196113 . C T 737 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.14;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:770,93,0 chrI 196198 . A G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.037;QD=16.19;ReadPosRankSum=1.659;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:794,99,0 chrI 196233 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.70;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:837,99,0 chrI 196248 . G C 727 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.64;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:760,96,0 chrI 196284 . G A 355 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=15.43;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:388,48,0 chrI 196452 . C T 438 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=23.0147;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=14.13;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:57:471,57,0 chrI 196500 . C T 467 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=12.29;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:500,60,0 chrI 196523 . T A 482 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.06;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:515,63,0 chrI 196558 . A G 519 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.30;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:552,69,0 chrI 196623 . C T 310.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.164;DP=26;Dels=0.00;FS=6.628;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.037;QD=11.92;ReadPosRankSum=1.364;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:5,21:26:24:343,24,0 chrI 196747 . C A 1171 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.69;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1204,141,0 chrI 196779 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.76;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1021,123,0 chrI 196861 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=15.43;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:90:758,90,0 chrI 196884 . C T 610 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.19;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:43:78:643,78,0 chrI 196929 . A G 382 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=9.79;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:415,51,0 chrI 196932 . C T 440 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=11.58;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:57:473,57,0 chrI 196996 . T C 762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.377;QD=16.57;ReadPosRankSum=1.657;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:795,99,0 chrI 197018 . A G 768 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=16.34;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:801,99,0 chrI 197024 . A G 737 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=14.45;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:770,96,0 chrI 197075 . G A 579 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=13.16;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:612,72,0 chrI 197098 . T C 518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.282;QD=11.77;ReadPosRankSum=1.652;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:69:551,69,0 chrI 197120 . G A 595 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=14.87;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:75:628,75,0 chrI 197123 . G A 620 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=15.12;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:653,78,0 chrI 197155 . A T 754 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=15.71;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:787,93,0 chrI 197194 . A T 804 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.41;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:837,99,0 chrI 197236 . G T 898 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=16.94;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:931,114,0 chrI 197344 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.38;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1060,126,0 chrI 197350 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.26;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1289,153,0 chrI 197520 . T C 324 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=12.46;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:45:357,45,0 chrI 197772 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=21.21;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1475,180,0 chrI 197811 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=56.5447;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=20.03;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1275,153,0 chrI 197826 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=19.53;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1244,147,0 chrI 197873 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=19.19;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1127,135,0 chrI 197878 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=17.59;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1053,129,0 chrI 197895 . G T 1142 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=18.72;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1175,141,0 chrI 197951 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=17.15;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1148,138,0 chrI 197957 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=18.38;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1154,138,0 chrI 198013 . T A 1038 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.30;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1071,129,0 chrI 198091 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.42;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:991,117,0 chrI 198113 . T C 705 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.02;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:738,90,0 chrI 198157 . C G 584 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=14.60;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:78:617,78,0 chrI 198166 . A C 554 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=14.21;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:587,75,0 chrI 198168 . G T 562 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=14.79;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:595,72,0 chrI 198185 . C G 412 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=12.87;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:54:445,54,0 chrI 198186 . G A 444 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=13.87;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:57:477,57,0 chrI 198199 . A G 396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=-0.264;QD=11.65;ReadPosRankSum=2.301;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:2,31:34:54:429,54,0 chrI 198204 . A C 404 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=12.62;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:54:437,54,0 chrI 198215 . C A 550 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=13.75;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:69:583,69,0 chrI 198232 . C G 352 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=9.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:48:385,48,0 chrI 198244 . G T 350 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=10.94;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:45:383,45,0 chrI 198252 . C G 307 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=10.59;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:340,42,0 chrI 198253 . T C 309 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=10.66;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:42:342,42,0 chrI 198259 . T C 303 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=10.82;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:42:336,42,0 chrI 198267 . A G 299 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=11.07;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:332,42,0 chrI 198279 . A G 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=1.156;QD=11.58;ReadPosRankSum=1.589;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:39:311,39,0 chrI 198287 . A G 320 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=12.31;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,25:26:42:353,42,0 chrI 198307 . A G 356 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=15.48;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:48:389,48,0 chrI 198314 . A G 349 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=15.86;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:382,48,0 chrI 198321 . C G 317 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.85;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:350,42,0 chrI 198331 . G T 484 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=16.69;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:60:517,60,0 chrI 198347 . G T 558 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=17.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:591,69,0 chrI 198351 . G A 553 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:72:586,72,0 chrI 198377 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=1.96;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:12:101,12,0 chrI 198456 . T A 469 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=21.32;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:502,60,0 chrI 198468 . C G 331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.484;DP=26;Dels=0.00;FS=14.287;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;MQRankSum=0.708;QD=12.73;ReadPosRankSum=2.870;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:5,18:26:45:364,45,0 chrI 198482 . G A 259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.920;DP=20;Dels=0.00;FS=14.880;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;MQRankSum=1.658;QD=12.95;ReadPosRankSum=1.920;SB=-9.199e+01 GT:AD:DP:GQ:PL 1/1:5,15:20:36:292,36,0 chrI 198560 . T C 35.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.99;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:68,9,0 chrI 198586 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=24.19;MQ0=0;QD=4.65;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:45,6,0 chrI 198851 . G C 65.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=10.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:6:12:98,12,0 chrI 198856 . T C 61.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=15.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:94,12,0 chrI 202491 . A G 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.81;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:44,6,0 chrI 202499 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.17;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:51,6,0 chrI 202510 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:49,6,0 chrI 202514 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.57;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrI 202516 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.49;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrI 202519 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.40;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:48,6,0 chrI 202520 . T C 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.16;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:45,6,0 chrI 202521 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.203;QD=1.22;ReadPosRankSum=1.470;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:1,12:13:6:47,6,0 chrI 202529 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.65;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:77,9,0 chrI 202531 . A C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.23;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:70,9,0 chrI 202534 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=57.9905;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.53;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrI 202538 . G A 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=57.9905;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.53;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:75,9,0 chrI 202563 . A G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=3.23;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:97,12,0 chrI 202567 . G A 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=3.81;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:101,12,0 chrI 202571 . A C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.34;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:50,6,0 chrI 202572 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.27;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrI 202575 . G T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.27;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:49,6,0 chrI 202579 . A G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.06;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:46,6,0 chrI 202581 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.13;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:47,6,0 chrI 202589 . G A 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=0.99;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:48,6,0 chrI 202600 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.7910;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=1.18;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:50,6,0 chrI 202692 . G T 66.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=2.08;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:99,12,0 chrI 202710 . T C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=1.93;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:98,12,0 chrI 202712 . C G 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=1.81;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:94,12,0 chrI 202713 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;MQRankSum=0.545;QD=1.79;ReadPosRankSum=1.634;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,34:35:12:95,12,0 chrI 202718 . A T 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.61;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:24:199,24,0 chrI 202724 . A G 188.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=5.37;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:221,27,0 chrI 202727 . T C 179.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=5.42;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:212,27,0 chrI 202732 . G A 195.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=5.91;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:228,27,0 chrI 202740 . T A 217 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-1.040;QD=6.20;ReadPosRankSum=1.634;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:1,34:35:30:250,30,0 chrI 202761 . C T 219 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=9.52;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:252,30,0 chrI 202762 . T A 208 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=-0.722;QD=8.67;ReadPosRankSum=1.589;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:30:241,30,0 chrI 202763 . C G 241 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=9.27;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,24:26:33:274,33,0 chrI 202786 . A T 491 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=11.16;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:524,63,0 chrI 202801 . G A 744 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=14.04;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:777,93,0 chrI 202945 . G A 424 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=11.46;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:57:457,57,0 chrI 202953 . A G 313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=9.551;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=-0.272;QD=9.78;ReadPosRankSum=2.297;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:45:346,45,0 chrI 202957 . T C 341 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=10.33;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:48:374,48,0 chrI 202977 . A T 402 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=9.57;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:435,54,0 chrI 202994 . G T 513 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=11.66;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:546,69,0 chrI 203104 . C T 686 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=16.73;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,36:41:84:719,84,0 chrI 203105 . A G 597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;MQRankSum=1.251;QD=16.58;ReadPosRankSum=1.636;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:78:630,78,0 chrI 203111 . C T 532 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=14.38;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:565,69,0 chrI 203180 . T C 989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;MQRankSum=0.600;QD=19.02;ReadPosRankSum=1.599;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1022,129,0 chrI 203214 . G C 859 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=18.67;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:892,111,0 chrI 203215 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=18.76;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:896,108,0 chrI 203283 . A T 972 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=20.68;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1005,120,0 chrI 203313 . G A 1036 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=19.55;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1069,129,0 chrI 203349 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=21.67;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1203,144,0 chrI 203364 . A G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=8.725;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;MQRankSum=-0.073;QD=20.24;ReadPosRankSum=2.354;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1065,132,0 chrI 203458 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=21.02;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1378,162,0 chrI 203461 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=21.39;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1338,159,0 chrI 203606 . C T 623 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=10;QD=14.16;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:656,81,0 chrI 203660 . C T 867 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=8;QD=13.76;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:900,108,0 chrI 203912 . A T 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=20.08;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1459,183,0 chrI 203922 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=18.47;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1215,155,0 chrI 203957 . A G 776 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=16.17;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:809,105,0 chrI 203973 . G A 439 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=0;QD=15.14;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:472,63,0 chrI 203984 . G A 192 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=0;QD=10.67;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:225,30,0 chrI 204023 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=0;QD=1.71;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:50,6,0 chrI 204029 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;QD=3.23;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:74,9,0 chrI 204035 . C T 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;QD=3.38;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:76,9,0 chrI 204041 . C A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;QD=1.52;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:51,6,0 chrI 204043 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=0;MQRankSum=-1.470;QD=1.37;ReadPosRankSum=1.470;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:1,12:13:6:49,6,0 chrI 204047 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=0;QD=1.49;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrI 204050 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.20;MQ0=0;QD=1.40;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:48,6,0 chrI 204071 . G A 70.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=0;QD=6.41;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:103,12,0 chrI 204074 . C T 70.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=7.05;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:103,12,0 chrI 204113 . T G 109.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=12.13;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:142,18,0 chrI 204116 . A T 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=10.25;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:125,15,0 chrI 204125 . C A 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=11.03;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:121,15,0 chrI 204126 . A G 86.26 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=10.78;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:119,15,0 chrI 204131 . A C 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=9.92;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:122,15,0 chrI 204146 . A G 83.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=0;MQRankSum=1.448;QD=6.94;ReadPosRankSum=1.448;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:15:116,15,0 chrI 204149 . G A 87.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;MQRankSum=1.470;QD=6.71;ReadPosRankSum=1.203;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:120,15,0 chrI 204155 . C G 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=0;QD=2.84;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:69,9,0 chrI 204167 . C T 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=0;QD=4.30;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:97,12,0 chrI 204173 . C T 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=6.52;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:124,15,0 chrI 204174 . C T 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=6.66;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:126,15,0 chrI 204176 . A G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=6.30;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:121,15,0 chrI 204178 . G C 85.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=0;QD=6.09;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:118,15,0 chrI 204186 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=4.23;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:96,12,0 chrI 204188 . C T 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=4.37;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:98,12,0 chrI 204194 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=0;QD=2.71;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:70,9,0 chrI 204195 . G A 35.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=0;QD=2.57;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:68,9,0 chrI 204197 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=0;QD=2.78;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:71,9,0 chrI 204200 . T A 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=1.94;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:9:67,9,0 chrI 204203 . C T 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=0;QD=2.00;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:72,9,0 chrI 204212 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;QD=1.73;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:9:70,9,0 chrI 204216 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=1.86;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:71,9,0 chrI 204254 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.95;MQ0=0;QD=1.40;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:74,9,0 chrI 204275 . T C 218 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=0;QD=5.89;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:33:251,33,0 chrI 204281 . A G 195 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;QD=5.57;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:228,30,0 chrI 204287 . C T 177.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=0;QD=5.71;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:27:210,27,0 chrI 204290 . C T 225 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.94;MQ0=0;QD=8.04;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:258,33,0 chrI 204296 . C T 226 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=8.07;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:259,33,0 chrI 204308 . C T 223 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=9.70;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:256,33,0 chrI 204309 . G C 217 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=9.43;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:250,33,0 chrI 204310 . T A 195 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=8.48;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:228,30,0 chrI 204311 . T A 225 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=2;QD=9.00;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:2,23:25:33:258,33,0 chrI 204320 . C T 222 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=3;QD=8.22;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,26:27:33:255,33,0 chrI 204329 . C G 225 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=3;QD=9.78;SB=-1.080e-02 GT:AD:DP:GQ:PL 1/1:3,20:23:33:258,33,0 chrI 204335 . C T 173.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.25;MQ0=4;QD=8.24;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:3,18:21:27:206,27,0 chrI 205742 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.972;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=24.9249;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=24;MQRankSum=1.518;QD=0.35;ReadPosRankSum=0.728;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,44:89:61:61,0,165 chrI 205751 . C T 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.427;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=75.0109;MLEAC=1;MLEAF=0.500;MQ=19.19;MQ0=27;MQRankSum=-0.773;QD=1.63;ReadPosRankSum=-1.056;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,61:103:71:198,0,71 chrI 205760 . C T 387.21 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.908;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=51.0317;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=37;MQRankSum=-1.312;QD=3.15;ReadPosRankSum=-0.093;SB=2.79 GT:AD:DP:GQ:PL 1/1:40,83:123:16:420,16,0 chrI 205787 . T C 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.086;DP=175;Dels=0.00;FS=29.908;HaplotypeScore=21.0682;MLEAC=1;MLEAF=0.500;MQ=19.05;MQ0=64;MQRankSum=0.983;QD=1.91;ReadPosRankSum=0.347;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:81,94:175:99:365,0,243 chrI 205805 . C T 280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=20.7452;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=67;MQRankSum=-0.231;QD=1.45;ReadPosRankSum=3.975;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:116,77:193:99:310,0,516 chrI 205814 . G T 1198 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.096;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=21.6176;MLEAC=2;MLEAF=1.00;MQ=20.93;MQ0=70;MQRankSum=0.223;QD=5.14;ReadPosRankSum=-1.222;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:7,226:233:99:1231,135,0 chrI 205835 . C T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;DP=250;Dels=0.00;FS=10.510;HaplotypeScore=13.0426;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=64;MQRankSum=1.079;QD=0.34;ReadPosRankSum=1.818;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:179,71:250:99:115,0,1271 chrI 205848 . G A 1074.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.809;DP=224;Dels=0.00;FS=17.162;HaplotypeScore=28.2891;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=50;MQRankSum=1.678;QD=4.79;ReadPosRankSum=2.347;SB=-6.560e+02 GT:AD:DP:GQ:PL 0/1:69,153:224:99:1104,0,225 chrI 205877 . T C 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;DP=140;Dels=0.00;FS=29.377;HaplotypeScore=31.6199;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=14;MQRankSum=-1.094;QD=0.37;ReadPosRankSum=-1.072;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,38:140:82:82,0,889 chrI 205883 . T C 1000 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.129;DP=129;Dels=0.00;FS=16.546;HaplotypeScore=69.3022;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=7;MQRankSum=1.240;QD=7.75;ReadPosRankSum=-1.323;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:22,107:129:80:1033,80,0 chrI 205886 . T C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.042;DP=125;Dels=0.00;FS=30.213;HaplotypeScore=77.4592;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=5;MQRankSum=-0.761;QD=0.09;ReadPosRankSum=-2.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,26:125:41:41,0,902 chrI 205901 . A G 729 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=56.6437;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=10.57;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:96:762,96,0 chrI 205911 . A G 70.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;DP=34;Dels=0.00;FS=18.042;HaplotypeScore=17.5494;MLEAC=1;MLEAF=0.500;MQ=31.19;MQ0=0;MQRankSum=0.397;QD=2.07;ReadPosRankSum=2.053;SB=-3.377e-01 GT:AD:DP:GQ:PL 0/1:16,18:34:8:100,0,8 chrI 205913 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=7.6508;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=1.52;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:70,9,0 chrI 205949 . C T 412 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=12;QD=4.48;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,92:92:57:445,57,0 chrI 205955 . C T 657 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=17;QD=5.97;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:87:690,87,0 chrI 206001 . C G 644.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;DP=164;Dels=0.00;FS=38.050;HaplotypeScore=2.8253;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=25;MQRankSum=3.761;QD=3.93;ReadPosRankSum=3.169;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:75,88:164:52:674,0,52 chrI 206036 . A G 465 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=113.0423;MLEAC=2;MLEAF=1.00;MQ=17.81;MQ0=16;QD=3.39;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:60:498,60,0 chrI 206037 . A G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;DP=139;Dels=0.00;FS=7.961;HaplotypeScore=113.0423;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=16;MQRankSum=-0.519;QD=0.40;ReadPosRankSum=3.458;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:103,36:139:85:85,0,262 chrI 206039 . G T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.344;DP=135;Dels=0.00;FS=2.167;HaplotypeScore=90.9381;MLEAC=1;MLEAF=0.500;MQ=18.08;MQ0=14;MQRankSum=-0.761;QD=0.34;ReadPosRankSum=2.996;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:91,36:135:76:76,0,288 chrI 206046 . A G 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.304;DP=104;Dels=0.00;FS=3.910;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=17.62;MQ0=7;MQRankSum=-0.594;QD=0.10;ReadPosRankSum=0.718;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:47,57:104:40:40,0,116 chrI 206048 . T C 150.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=16.5972;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=6;MQRankSum=0.952;QD=1.46;ReadPosRankSum=2.399;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:24:183,24,0 chrI 206054 . A T 149.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=105;Dels=0.00;FS=4.024;HaplotypeScore=22.0305;MLEAC=2;MLEAF=1.00;MQ=17.28;MQ0=7;MQRankSum=0.928;QD=1.42;ReadPosRankSum=2.557;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:5,100:105:24:182,24,0 chrI 206057 . C T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;DP=106;Dels=0.00;FS=4.258;HaplotypeScore=21.1542;MLEAC=1;MLEAF=0.500;MQ=17.35;MQ0=6;MQRankSum=2.769;QD=0.77;ReadPosRankSum=0.360;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:71,35:106:41:112,0,41 chrI 206060 . T C 129.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.368;DP=107;Dels=0.00;FS=17.372;HaplotypeScore=21.9429;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=6;MQRankSum=-2.497;QD=1.21;ReadPosRankSum=1.495;SB=-7.213e+01 GT:AD:DP:GQ:PL 1/1:5,102:107:5:160,5,0 chrI 206165 . T C 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.709;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.7776;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=0;MQRankSum=-0.063;QD=2.29;ReadPosRankSum=0.315;SB=2.36 GT:AD:DP:GQ:PL 1/1:3,14:17:9:71,9,0 chrI 206195 . C T 93.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.146;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;MQRankSum=1.582;QD=4.05;ReadPosRankSum=1.800;SB=-1.029e-01 GT:AD:DP:GQ:PL 1/1:2,21:23:15:126,15,0 chrI 206199 . G T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;QD=3.79;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,21:23:15:120,15,0 chrI 206201 . T G 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=1;MQRankSum=1.364;QD=1.50;ReadPosRankSum=2.237;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:3,21:26:9:71,9,0 chrI 206217 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.434;DP=74;Dels=0.00;FS=13.249;HaplotypeScore=49.2001;MLEAC=1;MLEAF=0.500;MQ=24.79;MQ0=3;MQRankSum=2.156;QD=0.47;ReadPosRankSum=5.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,23:74:65:65,0,109 chrI 206219 . C T 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;DP=75;Dels=0.00;FS=22.962;HaplotypeScore=50.1790;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=3;MQRankSum=-0.305;QD=0.73;ReadPosRankSum=-3.640;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:35,39:75:85:85,0,111 chrI 206225 . C T 189.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345;DP=84;Dels=0.00;FS=4.662;HaplotypeScore=48.2475;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=3;MQRankSum=0.328;QD=2.26;ReadPosRankSum=-0.791;SB=-1.125e+02 GT:AD:DP:GQ:PL 1/1:13,71:84:7:221,7,0 chrI 206226 . A G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=90;Dels=0.00;FS=12.380;HaplotypeScore=48.2475;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=3;MQRankSum=1.604;QD=0.58;ReadPosRankSum=0.967;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,21:90:82:82,0,132 chrI 206234 . T A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.586;DP=113;Dels=0.00;FS=19.633;HaplotypeScore=113.8932;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=5;MQRankSum=1.428;QD=0.35;ReadPosRankSum=-3.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,25:113:70:70,0,264 chrI 206250 . C T 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.457;DP=123;Dels=0.03;FS=8.425;HaplotypeScore=219.9918;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=7;MQRankSum=-3.181;QD=0.78;ReadPosRankSum=-2.584;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:57,62:119:81:126,0,81 chrI 206252 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;DP=126;Dels=0.00;FS=3.359;HaplotypeScore=170.4864;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=7;MQRankSum=-3.011;QD=0.76;ReadPosRankSum=-1.520;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:55,61:126:99:126,0,123 chrI 206255 . C T 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.102;DP=131;Dels=0.00;FS=21.089;HaplotypeScore=149.0387;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=7;MQRankSum=-2.812;QD=0.66;ReadPosRankSum=-1.875;SB=-2.220e+02 GT:AD:DP:GQ:PL 0/1:64,66:131:99:117,0,213 chrI 206257 . G C 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;DP=135;Dels=0.00;FS=13.505;HaplotypeScore=137.4292;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=7;MQRankSum=-2.380;QD=0.60;ReadPosRankSum=-0.966;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:48,68:135:99:111,0,184 chrI 206258 . C A 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.562;DP=145;Dels=0.00;FS=2.956;HaplotypeScore=139.2704;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=8;MQRankSum=-1.895;QD=0.75;ReadPosRankSum=0.291;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:52,86:145:99:139,0,182 chrI 206271 . C G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DP=216;Dels=0.00;FS=8.151;HaplotypeScore=87.6812;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=8;MQRankSum=3.467;QD=0.19;ReadPosRankSum=2.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,39:216:71:71,0,775 chrI 206278 . C A 704.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.874;DP=246;Dels=0.00;FS=1.216;HaplotypeScore=223.7671;MLEAC=1;MLEAF=0.500;MQ=28.77;MQ0=7;MQRankSum=2.295;QD=2.86;ReadPosRankSum=-3.402;SB=-3.870e+02 GT:AD:DP:GQ:PL 0/1:162,84:246:99:734,0,510 chrI 206324 . A T 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DP=358;Dels=0.00;FS=19.070;HaplotypeScore=126.5526;MLEAC=1;MLEAF=0.500;MQ=31.85;MQ0=6;MQRankSum=-2.905;QD=0.31;ReadPosRankSum=-1.718;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:253,104:358:99:140,0,3164 chrI 206351 . T C 4335.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=364;Dels=0.00;FS=40.594;HaplotypeScore=43.8020;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=19;MQRankSum=0.826;QD=11.91;ReadPosRankSum=4.173;SB=-2.642e+03 GT:AD:DP:GQ:PL 1/1:17,346:364:99:4335,495,0 chrI 206354 . G T 3516.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.033;DP=365;Dels=0.00;FS=2.468;HaplotypeScore=48.3343;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=23;MQRankSum=0.549;QD=9.63;ReadPosRankSum=2.863;SB=-2.319e+03 GT:AD:DP:GQ:PL 1/1:30,325:365:99:3516,131,0 chrI 206406 . C G 557.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=411;Dels=0.00;FS=0.000;HaplotypeScore=200.6499;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=26;MQRankSum=0.805;QD=1.36;ReadPosRankSum=0.343;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:302,97:411:99:587,0,1374 chrI 206423 . C T 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.668;DP=444;Dels=0.00;FS=15.088;HaplotypeScore=239.4117;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=24;MQRankSum=-1.175;QD=1.43;ReadPosRankSum=6.629;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:331,111:444:99:665,0,2009 chrI 206441 . A G 3657.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-7.057;DP=449;Dels=0.00;FS=223.814;HaplotypeScore=142.6930;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=14;MQRankSum=-2.552;QD=8.14;ReadPosRankSum=4.445;SB=-2.176e+03 GT:AD:DP:GQ:PL 1/1:93,356:449:99:3657,280,0 chrI 206462 . T C 701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;DP=432;Dels=0.00;FS=34.367;HaplotypeScore=172.0501;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=41;MQRankSum=-2.292;QD=1.62;ReadPosRankSum=-3.237;SB=-4.530e+02 GT:AD:DP:GQ:PL 0/1:280,149:432:99:731,0,1486 chrI 206480 . C T 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.021;DP=402;Dels=0.00;FS=36.797;HaplotypeScore=217.6435;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=57;MQRankSum=-0.429;QD=1.49;ReadPosRankSum=0.333;SB=-3.780e+02 GT:AD:DP:GQ:PL 0/1:277,125:402:99:628,0,1597 chrI 206489 . G T 2255.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DP=411;Dels=0.00;FS=19.256;HaplotypeScore=187.9742;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=62;MQRankSum=1.349;QD=5.49;ReadPosRankSum=0.503;SB=-1.336e+03 GT:AD:DP:GQ:PL 0/1:50,326:411:99:2285,0,151 chrI 206510 . C T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DP=263;Dels=0.00;FS=0.697;HaplotypeScore=29.0023;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=54;MQRankSum=-2.588;QD=0.40;ReadPosRankSum=1.839;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:209,54:263:99:134,0,1528 chrI 206523 . G A 845.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.337;DP=221;Dels=0.00;FS=7.891;HaplotypeScore=33.7375;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=50;MQRankSum=-0.871;QD=3.82;ReadPosRankSum=2.959;SB=-6.490e+02 GT:AD:DP:GQ:PL 0/1:93,128:221:99:875,0,550 chrI 206552 . T C 182.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;DP=234;Dels=0.00;FS=1.242;HaplotypeScore=72.3423;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=13;MQRankSum=0.773;QD=0.78;ReadPosRankSum=-2.989;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:160,74:234:99:212,0,1499 chrI 206558 . T C 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DP=237;Dels=0.00;FS=39.640;HaplotypeScore=160.7144;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=8;MQRankSum=-1.129;QD=0.67;ReadPosRankSum=-4.347;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:146,87:237:99:188,0,1503 chrI 206564 . G T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DP=234;Dels=0.00;FS=84.098;HaplotypeScore=169.2758;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=1;MQRankSum=-1.519;QD=0.12;ReadPosRankSum=-0.995;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,54:234:57:57,0,1730 chrI 206576 . A G 112.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.435;DP=184;Dels=0.00;FS=91.874;HaplotypeScore=194.4237;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=0;MQRankSum=-3.044;QD=0.61;ReadPosRankSum=-1.960;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:100,84:184:99:142,0,1199 chrI 206580 . T A 215.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=175;Dels=0.00;FS=52.785;HaplotypeScore=153.7324;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=0;MQRankSum=-2.950;QD=1.23;ReadPosRankSum=-0.459;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:91,84:175:99:245,0,1175 chrI 206585 . T C 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;DP=175;Dels=0.00;FS=62.482;HaplotypeScore=158.4302;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=0;MQRankSum=-2.147;QD=1.13;ReadPosRankSum=0.076;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:90,82:175:99:228,0,1176 chrI 206586 . G A 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.784;DP=174;Dels=0.00;FS=48.833;HaplotypeScore=157.0508;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=-0.323;QD=0.54;ReadPosRankSum=-0.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,45:174:99:124,0,1302 chrI 206615 . T C 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.886;DP=220;Dels=0.00;FS=37.757;HaplotypeScore=70.6738;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=-2.475;QD=0.08;ReadPosRankSum=-2.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,52:220:48:48,0,2018 chrI 206675 . A T 1802.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=231;Dels=0.00;FS=15.683;HaplotypeScore=18.3665;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=2;MQRankSum=-3.150;QD=7.80;ReadPosRankSum=1.996;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:89,142:231:99:1832,0,1023 chrI 206799 . T G 494 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=10.6470;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=12.05;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:66:527,66,0 chrI 206807 . T A 325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;DP=39;Dels=0.00;FS=7.825;HaplotypeScore=6.9016;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=1;MQRankSum=0.044;QD=8.33;ReadPosRankSum=1.020;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/1:17,22:39:34:355,0,34 chrI 206825 . C T 197.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;DP=34;Dels=0.00;FS=21.141;HaplotypeScore=3.6557;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=1;MQRankSum=1.926;QD=5.81;ReadPosRankSum=-3.814;SB=-1.476e+02 GT:AD:DP:GQ:PL 0/1:16,17:34:5:227,0,5 chrI 206829 . G T 148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;DP=31;Dels=0.00;FS=11.397;HaplotypeScore=4.5498;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=1;MQRankSum=1.808;QD=4.77;ReadPosRankSum=-4.178;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:17,14:31:31:178,0,31 chrI 206856 . A G 168.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.030;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=3;MQRankSum=1.797;QD=4.43;ReadPosRankSum=-1.330;SB=-7.023e+01 GT:AD:DP:GQ:PL 1/1:8,28:38:8:200,8,0 chrI 206867 . T C 309 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=3;QD=7.54;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:42:342,42,0 chrI 206946 . G A 254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=8.1794;MLEAC=2;MLEAF=1.00;MQ=20.16;MQ0=1;MQRankSum=0.282;QD=5.77;ReadPosRankSum=1.491;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:36:287,36,0 chrI 206953 . T C 113.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;DP=37;Dels=0.00;FS=19.724;HaplotypeScore=11.2576;MLEAC=1;MLEAF=0.500;MQ=18.69;MQ0=1;MQRankSum=-0.799;QD=3.05;ReadPosRankSum=0.959;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:7,30:37:24:143,0,24 chrI 206968 . T C 60.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.88;MQ0=1;QD=3.36;SB=-9.145e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:93,12,0 chrI 206970 . A G 26.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=18;Dels=0.00;FS=3.274;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=17.88;MQ0=1;MQRankSum=-0.075;QD=1.45;ReadPosRankSum=1.267;SB=-9.045e+01 GT:AD:DP:GQ:PL 0/1:2,16:18:14:56,0,14 chrI 206985 . T C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=0;QD=1.74;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:45,6,0 chrI 207021 . C T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.051;DP=82;Dels=0.00;FS=37.189;HaplotypeScore=16.6549;MLEAC=1;MLEAF=0.500;MQ=24.21;MQ0=0;MQRankSum=-2.628;QD=0.21;ReadPosRankSum=0.356;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,22:82:47:47,0,240 chrI 207022 . T C 342 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.3615;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=0;QD=4.22;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:48:375,48,0 chrI 207028 . C T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;DP=84;Dels=0.00;FS=40.592;HaplotypeScore=70.5838;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=0;MQRankSum=-2.752;QD=0.22;ReadPosRankSum=1.613;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,22:84:48:48,0,216 chrI 207033 . G A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=86;Dels=0.00;FS=3.472;HaplotypeScore=72.0973;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=1;MQRankSum=-0.522;QD=0.47;ReadPosRankSum=0.639;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:62,24:86:70:70,0,193 chrI 207034 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;DP=88;Dels=0.00;FS=71.784;HaplotypeScore=75.6214;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=1;MQRankSum=-2.667;QD=0.49;ReadPosRankSum=1.233;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,39:88:73:73,0,209 chrI 207035 . G A 228.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DP=88;Dels=0.00;FS=35.759;HaplotypeScore=73.6742;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=1;MQRankSum=-3.938;QD=2.59;ReadPosRankSum=1.691;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:15,73:88:26:258,0,26 chrI 207039 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;DP=90;Dels=0.00;FS=35.742;HaplotypeScore=62.8770;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=1;MQRankSum=4.295;QD=0.34;ReadPosRankSum=-1.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,17:90:61:61,0,277 chrI 207059 . T A 191.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=93;Dels=0.00;FS=71.402;HaplotypeScore=36.3157;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=1;MQRankSum=-3.320;QD=2.05;ReadPosRankSum=1.538;SB=-9.689e+01 GT:AD:DP:GQ:PL 0/1:29,64:93:99:221,0,141 chrI 207069 . C T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DP=82;Dels=0.00;FS=34.627;HaplotypeScore=61.2499;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=1;MQRankSum=-0.319;QD=0.33;ReadPosRankSum=-0.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,17:82:57:57,0,295 chrI 207073 . C T 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DP=77;Dels=0.00;FS=35.799;HaplotypeScore=87.7535;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=1;MQRankSum=-2.619;QD=3.08;ReadPosRankSum=-4.934;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:17,59:77:83:267,0,83 chrI 207076 . C T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;DP=75;Dels=0.00;FS=31.564;HaplotypeScore=55.3389;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=1;MQRankSum=-0.497;QD=0.33;ReadPosRankSum=-0.565;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,15:75:55:55,0,318 chrI 207079 . C G 187.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=53;Dels=0.00;FS=47.221;HaplotypeScore=39.4587;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=1;MQRankSum=-2.321;QD=3.53;ReadPosRankSum=-3.355;SB=-4.902e+01 GT:AD:DP:GQ:PL 0/1:18,35:53:99:217,0,114 chrI 207081 . A G 96.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;DP=54;Dels=0.00;FS=28.052;HaplotypeScore=30.6501;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=1;MQRankSum=-0.634;QD=1.78;ReadPosRankSum=0.063;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:30,24:54:99:126,0,186 chrI 207082 . C T 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;DP=55;Dels=0.00;FS=28.052;HaplotypeScore=30.6501;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=2;MQRankSum=-1.224;QD=1.82;ReadPosRankSum=-0.170;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:31,24:55:99:130,0,205 chrI 207085 . A C 121.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;DP=54;Dels=0.00;FS=45.528;HaplotypeScore=25.2079;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=2;MQRankSum=-2.172;QD=2.24;ReadPosRankSum=-2.567;SB=-4.823e+01 GT:AD:DP:GQ:PL 0/1:22,32:54:99:151,0,162 chrI 207089 . G A 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;DP=50;Dels=0.00;FS=43.516;HaplotypeScore=11.6818;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=2;MQRankSum=-2.374;QD=3.44;ReadPosRankSum=-4.483;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:20,30:50:99:202,0,139 chrI 207128 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=1;QD=4.33;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:71,9,0 chrI 207156 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.76;MQ0=1;QD=3.37;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrI 207194 . C T 163.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.04;MQ0=2;MQRankSum=-1.549;QD=5.09;ReadPosRankSum=-0.460;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:15,17:32:90:193,0,90 chrI 207196 . T C 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=39;Dels=0.00;FS=3.053;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=2;MQRankSum=-2.598;QD=4.03;ReadPosRankSum=1.140;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:21,18:39:99:187,0,116 chrI 207233 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.881;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=2;MQRankSum=-0.318;QD=15.97;ReadPosRankSum=1.703;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1981,257,0 chrI 207241 . C T 973.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.021;DP=128;Dels=0.00;FS=3.477;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=2;MQRankSum=-1.973;QD=7.60;ReadPosRankSum=0.606;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:52,76:128:99:1003,0,475 chrI 207247 . A G 427.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;DP=132;Dels=0.00;FS=2.429;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=2;MQRankSum=1.769;QD=3.23;ReadPosRankSum=-1.831;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:77,54:132:99:457,0,1045 chrI 207248 . G A 474.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.843;DP=132;Dels=0.00;FS=2.429;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=2;MQRankSum=1.960;QD=3.59;ReadPosRankSum=-1.946;SB=-3.250e+02 GT:AD:DP:GQ:PL 0/1:77,55:132:99:504,0,1023 chrI 207257 . A G 984.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.294;DP=146;Dels=0.00;FS=7.750;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=2;MQRankSum=-1.470;QD=6.74;ReadPosRankSum=3.598;SB=-3.860e+02 GT:AD:DP:GQ:PL 0/1:66,79:146:99:1014,0,531 chrI 207299 . G A 797.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.866;DP=112;Dels=0.00;FS=0.737;HaplotypeScore=16.9013;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=4;MQRankSum=0.378;QD=7.12;ReadPosRankSum=-2.094;SB=-3.430e+02 GT:AD:DP:GQ:PL 0/1:45,67:112:99:827,0,276 chrI 207395 . T C 1070 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=19.94;MQ0=16;MQRankSum=-0.469;QD=9.47;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:1103,138,0 chrI 207407 . A G 650 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-6.212;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=15;MQRankSum=5.428;QD=6.84;ReadPosRankSum=0.456;SB=3.01 GT:AD:DP:GQ:PL 1/1:45,48:95:53:683,53,0 chrI 207439 . G A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.367;DP=81;Dels=0.00;FS=3.945;HaplotypeScore=4.1141;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=19;MQRankSum=-0.244;QD=0.38;ReadPosRankSum=0.100;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:52,29:81:61:61,0,477 chrI 207449 . A T 722 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=17;QD=8.49;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:93:755,93,0 chrI 207536 . G C 829.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.441;DP=96;Dels=0.00;FS=8.757;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=19;MQRankSum=2.758;QD=8.64;ReadPosRankSum=0.038;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:34,61:96:99:859,0,131 chrI 207569 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.253;DP=84;Dels=0.00;FS=35.505;HaplotypeScore=5.7766;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=13;MQRankSum=-2.883;QD=0.57;ReadPosRankSum=-0.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,26:84:78:78,0,791 chrI 207579 . G A 1167 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=96;Dels=0.00;FS=3.233;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=13;MQRankSum=0.173;QD=12.16;ReadPosRankSum=1.646;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,92:96:99:1200,147,0 chrI 207621 . G A 1490 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=4;QD=14.19;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1523,186,0 chrI 207642 . T G 1468 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.4440;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=2;QD=13.72;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1501,188,0 chrI 207670 . T G 1343 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=3;QD=11.29;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1376,168,0 chrI 207683 . G A 1009 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=117;Dels=0.00;FS=3.921;HaplotypeScore=20.6633;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=4;MQRankSum=1.209;QD=8.62;ReadPosRankSum=0.992;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:12,104:117:35:1042,35,0 chrI 207685 . T C 1233 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=19.8400;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=4;QD=10.54;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1266,159,0 chrI 207766 . C T 776.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.559;DP=152;Dels=0.00;FS=3.409;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=21;MQRankSum=6.121;QD=5.11;ReadPosRankSum=0.313;SB=-3.650e+02 GT:AD:DP:GQ:PL 0/1:76,75:152:99:806,0,597 chrI 207935 . G A 702 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.802;DP=72;Dels=0.00;FS=4.842;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=33.41;MQ0=10;MQRankSum=2.647;QD=9.75;ReadPosRankSum=1.201;SB=-3.058e+02 GT:AD:DP:GQ:PL 1/1:11,61:72:51:735,51,0 chrI 208038 . G A 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=3;MQRankSum=-1.740;QD=3.42;ReadPosRankSum=-3.622;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,17:31:84:136,0,84 chrI 208064 . T A 91.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=6.52;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:124,15,0 chrI 208121 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=14.1093;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=3;MQRankSum=-0.868;QD=1.90;ReadPosRankSum=1.519;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:1,18:20:9:70,9,0 chrI 208150 . C T 69.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.62;MQ0=5;QD=4.97;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:102,12,0 chrI 208151 . T C 63.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.62;MQ0=5;QD=4.54;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:96,12,0 chrI 208276 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=7.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:46,6,0 chrI 208293 . G A 91.26 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=9.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:10:15:124,15,0 chrI 208383 . T C 234 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=14.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:33:267,33,0 chrI 208410 . C G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrI 208528 . C T 64.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:97,12,0 chrI 208529 . A G 62.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=15.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:95,12,0 chrI 208571 . A G 255 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=15.00;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:288,36,0 chrI 208588 . T C 387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=28;Dels=0.00;FS=8.049;HaplotypeScore=3.3781;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;MQRankSum=-1.342;QD=13.82;ReadPosRankSum=2.268;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:3,25:28:54:420,54,0 chrI 208659 . T C 285 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=5;MQRankSum=-0.056;QD=7.70;ReadPosRankSum=1.621;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:1,35:37:39:318,39,0 chrI 208691 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.78;MQ0=5;QD=0.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:22:6:49,6,0 chrI 208718 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=3;QD=4.10;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:73,9,0 chrI 208870 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.40;MQ0=1;QD=7.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:74,9,0 chrI 208879 . G A 91.26 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=2;QD=11.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:15:124,15,0 chrI 208934 . T G 182.01 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=3;QD=9.58;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:215,27,0 chrI 208975 . G T 94.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=0;QD=5.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:15:127,15,0 chrI 209741 . T C 222 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=5;QD=12.33;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:33:255,33,0 chrI 209772 . C T 261 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=3;QD=15.35;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:294,36,0 chrI 209787 . T C 245 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=3;QD=14.41;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:278,36,0 chrI 209811 . G A 313 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=3;QD=17.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:346,42,0 chrI 209827 . G C 42.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=4;QD=4.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:9:75,9,0 chrI 209938 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=1;QD=3.97;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrI 209951 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=0;QD=3.96;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:51,6,0 chrI 210046 . G A 260 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=18.57;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:36:293,36,0 chrI 210112 . T C 205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=25;Dels=0.00;FS=3.882;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=3;MQRankSum=0.630;QD=8.20;ReadPosRankSum=1.576;SB=-4.501e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:30:238,30,0 chrI 210154 . C G 257 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=2;QD=9.88;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:290,36,0 chrI 210155 . G A 281 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=2;QD=10.81;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:39:314,39,0 chrI 210202 . G A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=2;QD=1.49;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:46,6,0 chrI 210342 . A T 249 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=2;QD=11.86;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:33:282,33,0 chrI 210350 . T C 233 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=1;QD=12.26;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:266,33,0 chrI 210407 . G T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=1;QD=0.80;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,14:15:6:43,6,0 chrI 210410 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=1;QD=0.86;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,10:14:6:43,6,0 chrI 210916 . T G 63.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.02;MQ0=5;QD=4.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:12:96,12,0 chrI 212146 . A G 131.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=9;QD=8.19;SB=-2.494e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:164,21,0 chrI 212171 . C T 135.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.70;MQ0=9;QD=8.44;SB=-2.294e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:168,21,0 chrI 212187 . A C 134.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.21;MQ0=8;QD=8.94;SB=-2.494e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:21:167,21,0 chrI 212209 . G A 143.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=1;QD=17.88;SB=-2.494e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:176,21,0 chrI 212486 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.21;MQ0=18;QD=0.78;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,24:24:6:50,6,0 chrI 212500 . A C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=16;QD=0.76;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:47,6,0 chrI 212501 . G A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=16;QD=0.85;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:49,6,0 chrI 212521 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.12;MQ0=14;QD=1.09;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:52,6,0 chrI 219160 . T C 67.51 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.76;MQ0=21;QD=2.11;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:100,12,0 chrI 219166 . C T 162.03 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=20;QD=4.38;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:24:195,24,0 chrI 219190 . A G 413 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=19;QD=6.45;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:57:446,57,0 chrI 219241 . C G 841 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=2;QD=8.33;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:874,111,0 chrI 219285 . A C 532 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=82;Dels=0.00;FS=7.744;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=12;MQRankSum=0.194;QD=6.49;ReadPosRankSum=2.380;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:2,79:82:72:565,72,0 chrI 219329 . T G 249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.8025;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=18;MQRankSum=-0.433;QD=4.08;ReadPosRankSum=1.646;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,57:61:36:282,36,0 chrI 219396 . T C 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.18;MQ0=29;QD=0.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,31:33:6:46,6,0 chrI 219397 . C G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.18;MQ0=29;QD=0.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:6:46,6,0 chrI 219399 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.97;MQ0=31;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:6:48,6,0 chrI 219526 . G A 789 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=54;QD=7.17;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:822,99,0 chrI 219551 . A C 1553 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=35;QD=11.77;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:1586,200,0 chrI 219596 . T A 1066.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;DP=159;Dels=0.00;FS=18.162;HaplotypeScore=12.0515;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=3;MQRankSum=-3.806;QD=6.70;ReadPosRankSum=-0.131;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:84,75:159:99:1096,0,963 chrI 219608 . T G 640.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=137;Dels=0.00;FS=12.748;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=8;MQRankSum=3.173;QD=4.67;ReadPosRankSum=0.236;SB=-3.760e+02 GT:AD:DP:GQ:PL 0/1:69,68:137:99:670,0,839 chrI 219610 . T A 716.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;DP=139;Dels=0.00;FS=13.034;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=12;MQRankSum=3.395;QD=5.15;ReadPosRankSum=-0.031;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:70,69:139:99:746,0,833 chrI 219618 . C T 621.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.319;DP=127;Dels=0.00;FS=8.675;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=15;MQRankSum=2.548;QD=4.89;ReadPosRankSum=0.632;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:66,61:127:99:651,0,705 chrI 219637 . T A 527.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=115;Dels=0.00;FS=13.477;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=28;MQRankSum=1.153;QD=4.58;ReadPosRankSum=-1.462;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:59,56:115:99:557,0,443 chrI 219669 . C G 335 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=40;QD=4.65;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:45:368,45,0 chrI 219693 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.13;MQ0=55;QD=0.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:6:52,6,0 chrI 219700 . T A 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.88;MQ0=56;QD=0.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:48,16:64:6:49,6,0 chrI 219951 . T C 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.18;MQ0=21;MQRankSum=-1.589;QD=1.94;ReadPosRankSum=-0.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,38:65:99:156,0,196 chrI 219980 . A G 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=27;MQRankSum=0.406;QD=2.42;ReadPosRankSum=-0.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,30:67:99:192,0,173 chrI 220129 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.13;MQ0=62;MQRankSum=-1.940;QD=1.24;ReadPosRankSum=0.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,47:102:99:156,0,168 chrI 220220 . G C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=26;MQRankSum=-0.455;QD=1.46;ReadPosRankSum=-0.965;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,24:59:99:116,0,189 chrI 220227 . A G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=15.20;MQ0=29;MQRankSum=-0.171;QD=1.66;ReadPosRankSum=-0.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,21:61:99:131,0,103 chrI 220409 . G A 71.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=18;QD=2.38;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,28:30:12:104,12,0 chrI 220514 . G A 965.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;DP=133;Dels=0.00;FS=13.975;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=3;MQRankSum=0.102;QD=7.26;ReadPosRankSum=1.186;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:72,60:132:99:995,0,1089 chrI 220518 . C T 2704 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=21.29;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2737,327,0 chrI 220529 . G A 2193 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=8;QD=20.12;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2226,270,0 chrI 220607 . C T 464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.319;DP=96;Dels=0.00;FS=3.147;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=15;MQRankSum=-1.019;QD=4.83;ReadPosRankSum=0.223;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:50,46:96:99:494,0,557 chrI 220677 . T A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=48;Dels=0.00;FS=8.066;HaplotypeScore=77.5409;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=12;MQRankSum=2.118;QD=1.46;ReadPosRankSum=-3.557;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:41,7:48:25:100,0,25 chrI 220805 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.97;MQ0=28;QD=0.58;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,32:34:6:51,6,0 chrI 220858 . A C 410 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=42;QD=4.32;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,93:95:57:443,57,0 chrI 220963 . A G 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.388;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=1;MLEAF=0.500;MQ=13.45;MQ0=77;MQRankSum=-3.451;QD=0.81;ReadPosRankSum=-0.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,67:134:99:139,0,180 chrI 221658 . T C 511 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.51;MQ0=62;QD=4.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:66:544,66,0 chrI 221681 . C T 349 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.13;MQ0=49;QD=4.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:45:382,45,0 chrI 221690 . T C 234 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.56;MQ0=47;QD=3.39;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:33:267,33,0 chrI 221861 . C T 409.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.663;DP=107;Dels=0.00;FS=2.122;HaplotypeScore=5.1573;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=43;MQRankSum=-2.909;QD=3.82;ReadPosRankSum=1.305;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:50,57:107:99:439,0,388 chrI 221918 . C T 742.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DP=167;Dels=0.00;FS=1.410;HaplotypeScore=4.9328;MLEAC=1;MLEAF=0.500;MQ=27.89;MQ0=11;MQRankSum=2.052;QD=4.44;ReadPosRankSum=-0.257;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:93,74:167:99:772,0,952 chrI 222095 . C T 91.26 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.99;MQ0=70;QD=1.17;SB=-4.530e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:15:124,15,0 chrI 222122 . C T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DP=88;Dels=0.00;FS=2.199;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=11.78;MQ0=69;MQRankSum=1.395;QD=0.83;ReadPosRankSum=1.817;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:50,38:88:99:103,0,151 chrI 222191 . C T 1242 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=40;QD=9.78;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1275,159,0 chrI 222206 . G C 1911 filter AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.8151;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=30;QD=11.24;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,161:170:99:1944,245,0 chrI 222389 . T A 73.51 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.94;MQ0=97;QD=0.70;SB=-7.655e+01 GT:AD:DP:GQ:PL 1/1:3,102:105:12:106,12,0 chrI 222554 . T C 585.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.791;DP=204;Dels=0.00;FS=3.872;HaplotypeScore=9.6130;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=48;MQRankSum=1.134;QD=2.87;ReadPosRankSum=0.665;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/1:117,86:204:99:615,0,1247 chrI 222605 . T C 2908 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=227;Dels=0.00;FS=4.191;HaplotypeScore=17.7578;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=16;MQRankSum=-0.099;QD=12.81;ReadPosRankSum=1.716;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,224:227:99:2941,371,0 chrI 222674 . A G 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.906;DP=177;Dels=0.00;FS=0.737;HaplotypeScore=8.1440;MLEAC=1;MLEAF=0.500;MQ=21.10;MQ0=68;MQRankSum=-0.701;QD=1.77;ReadPosRankSum=0.852;SB=-2.360e+02 GT:AD:DP:GQ:PL 0/1:98,79:177:99:344,0,425 chrI 222767 . T C 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;DP=109;Dels=0.00;FS=2.235;HaplotypeScore=3.5809;MLEAC=1;MLEAF=0.500;MQ=12.86;MQ0=80;MQRankSum=-0.109;QD=0.90;ReadPosRankSum=-0.371;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:61,48:109:99:128,0,212 chrI 222930 . C T 355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.833;DP=123;Dels=0.00;FS=5.140;HaplotypeScore=8.7123;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=40;MQRankSum=-1.456;QD=2.89;ReadPosRankSum=1.884;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:50,73:123:99:385,0,158 chrI 223321 . G A 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DP=77;Dels=0.00;FS=12.876;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=38;MQRankSum=1.673;QD=3.21;ReadPosRankSum=1.028;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:37,39:77:99:277,0,360 chrI 223382 . G A 681.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;DP=96;Dels=0.00;FS=9.058;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=24;MQRankSum=-0.177;QD=7.09;ReadPosRankSum=-2.164;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:42,54:96:99:711,0,512 chrI 223519 . C T 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.20;MQ0=27;MQRankSum=0.867;QD=1.54;ReadPosRankSum=-0.867;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:24,22:46:99:101,0,174 chrI 223530 . A G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=15.42;MQ0=33;MQRankSum=-0.059;QD=2.25;ReadPosRankSum=0.295;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:23,25:48:46:138,0,46 chrI 223566 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=11.70;MQ0=32;MQRankSum=1.240;QD=0.41;ReadPosRankSum=0.496;SB=-2.674e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:6:50,6,0 chrI 223656 . C T 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;DP=93;Dels=0.00;FS=14.094;HaplotypeScore=8.0813;MLEAC=1;MLEAF=0.500;MQ=21.63;MQ0=55;MQRankSum=2.174;QD=1.62;ReadPosRankSum=-1.746;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,34:93:99:181,0,322 chrI 223668 . T C 229.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;DP=109;Dels=0.00;FS=39.074;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=27.49;MQ0=45;MQRankSum=1.223;QD=2.10;ReadPosRankSum=-1.435;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,38:109:99:259,0,688 chrI 223673 . C T 1454 filter AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=40;QD=12.43;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1487,180,0 chrI 223913 . T A 12.31 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.09;MQ0=30;MQRankSum=0.731;QD=0.35;ReadPosRankSum=0.731;SB=0.120 GT:AD:DP:GQ:PL 0/1:10,25:35:17:42,0,17 chrI 224001 . A C 406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.85;MQ0=69;MQRankSum=0.311;QD=3.53;ReadPosRankSum=-1.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,57:115:99:436,0,192 chrI 224014 . T A 935 filter AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=20.26;MQ0=75;QD=7.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:968,114,0 chrI 224092 . C T 188.01 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=13.45;MQ0=76;QD=2.04;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,92:92:27:221,27,0 chrI 224418 . C T 480 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.45;MQ0=74;QD=4.07;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,118:118:63:513,63,0 chrI 224430 . T C 494 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.37;MQ0=84;MQRankSum=-0.808;QD=3.83;ReadPosRankSum=1.655;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:5,124:129:63:527,63,0 chrI 224497 . C A 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.97;MQ0=83;MQRankSum=0.583;QD=0.26;ReadPosRankSum=0.869;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,45:95:54:55,0,54 chrI 224784 . A G 1149 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=53;MQRankSum=-0.974;QD=9.82;ReadPosRankSum=1.570;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1182,141,0 chrI 224831 . T A 91.26 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.91;MQ0=58;QD=1.40;SB=-4.830e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:15:124,15,0 chrI 225098 . A G 107.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.788;DP=32;Dels=0.00;FS=2.331;HaplotypeScore=5.4522;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=13;MQRankSum=2.122;QD=3.35;ReadPosRankSum=1.273;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:15,17:32:18:140,18,0 chrI 225360 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;DP=126;Dels=0.00;FS=2.320;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=14.96;MQ0=52;MQRankSum=-2.433;QD=0.56;ReadPosRankSum=-0.083;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:73,51:126:99:101,0,486 chrI 225364 . C T 751 filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.29;MQ0=53;QD=5.65;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:93:784,93,0 chrI 225383 . G A 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;DP=143;Dels=0.00;FS=1.462;HaplotypeScore=3.3655;MLEAC=1;MLEAF=0.500;MQ=16.09;MQ0=50;MQRankSum=-3.039;QD=0.76;ReadPosRankSum=-1.172;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:83,60:143:99:139,0,550 chrI 225416 . G T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=1;MLEAF=0.500;MQ=16.05;MQ0=46;MQRankSum=-3.150;QD=0.07;ReadPosRankSum=0.825;SB=-5.690e+01 GT:AD:DP:GQ:PL 0/1:77,61:139:40:40,0,503 chrI 225424 . A G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=1;MLEAF=0.500;MQ=16.06;MQ0=47;MQRankSum=-3.713;QD=0.16;ReadPosRankSum=1.592;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:78,64:143:53:53,0,532 chrI 225690 . A G 1748 filter AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=48;QD=10.22;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,169:171:99:1781,219,0 chrI 225760 . C G 2170 filter AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=41;QD=11.36;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,188:191:99:2203,275,0 chrI 226038 . A T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DP=99;Dels=0.00;FS=2.846;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=12.47;MQ0=58;MQRankSum=0.028;QD=0.46;ReadPosRankSum=-0.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,43:99:76:76,0,97 chrI 226077 . C A 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DP=132;Dels=0.00;FS=11.897;HaplotypeScore=7.4292;MLEAC=1;MLEAF=0.500;MQ=15.83;MQ0=51;MQRankSum=-1.557;QD=1.32;ReadPosRankSum=0.319;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:52,79:132:97:204,0,97 chrI 226095 . C T 552 filter AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=17.08;MQ0=46;QD=3.94;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:69:585,69,0 chrI 226413 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.44;MQ0=49;QD=0.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:6:47,6,0 chrI 226483 . C T 1021 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=6;QD=13.61;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1054,126,0 chrI 226488 . C T 1272 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=7;QD=14.62;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1305,156,0 chrI 226497 . C T 1334 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=7;QD=13.75;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1367,171,0 chrI 226509 . A T 417.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=7;MQRankSum=0.988;QD=3.66;ReadPosRankSum=-0.581;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:66,48:114:99:447,0,803 chrI 226533 . C T 760.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.168;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=15;MQRankSum=-0.122;QD=6.61;ReadPosRankSum=0.640;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:53,58:115:99:790,0,455 chrI 226704 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.78;MQ0=28;QD=0.54;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,30:31:6:48,6,0 chrI 226898 . T A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=4;QD=3.75;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:77,9,0 chrI 226901 . T A 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=3;QD=6.14;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:100,12,0 chrI 226906 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=1;QD=7.06;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:12:96,12,0 chrI 227620 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=5;QD=4.00;SB=-2.421e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:76,9,0 chrI 227665 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=6;QD=1.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:6:52,6,0 chrI 228199 . C A 295 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=6;QD=10.93;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:39:328,39,0 chrI 228232 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=5;QD=2.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:50,6,0 chrI 228491 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.41;MQ0=7;QD=1.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:51,6,0 chrI 228673 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=2;QD=3.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrI 228756 . A G 88.26 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.32;MQ0=11;QD=5.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:15:121,15,0 chrI 229011 . C T 41.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=9;QD=3.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:74,9,0 chrI 229098 . C T 86.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=2;QD=3.75;SB=-1.192e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:15:119,15,0 chrI 229104 . C A 94.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=2;QD=4.71;SB=-1.272e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:15:127,15,0 chrII 785 . C T 140.06 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.15;MQ0=4;QD=2.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:21:173,21,0 chrII 1187 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.56;MQ0=7;QD=1.52;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:54,6,0 chrII 1372 . G C 367 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=23;QD=9.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:40:45:400,45,0 chrII 1507 . G A 663 filter AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.1658;MLEAC=2;MLEAF=1.00;MQ=15.05;MQ0=20;QD=5.02;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:84:696,84,0 chrII 1596 . C T 103.26 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=16;QD=2.72;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:15:136,15,0 chrII 1785 . C T 583 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=18;QD=9.72;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:75:616,75,0 chrII 1831 . A C 589 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=18;QD=10.33;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,56:57:75:622,75,0 chrII 1850 . G A 280 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.43;MQ0=16;QD=9.66;SB=-5.000e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:36:313,36,0 chrII 5899 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DP=23;Dels=0.00;FS=4.393;HaplotypeScore=9.7658;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=1;MQRankSum=0.990;QD=0.49;ReadPosRankSum=-0.785;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:15,8:23:41:41,0,67 chrII 5933 . T C 42.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=16;Dels=0.00;FS=5.740;HaplotypeScore=11.6145;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=1;MQRankSum=1.110;QD=2.63;ReadPosRankSum=-0.588;SB=-9.565e-01 GT:AD:DP:GQ:PL 0/1:4,12:16:15:72,0,15 chrII 6000 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=2;MQRankSum=-1.231;QD=1.72;ReadPosRankSum=1.231;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:43,6,0 chrII 6002 . A C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=2;MQRankSum=-1.231;QD=1.72;ReadPosRankSum=1.231;SB=1.24 GT:AD:DP:GQ:PL 1/1:2,5:7:6:43,6,0 chrII 6067 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;DP=45;Dels=0.00;FS=1.435;HaplotypeScore=34.5989;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=4;MQRankSum=1.648;QD=1.24;ReadPosRankSum=0.129;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:33,12:45:86:86,0,292 chrII 6070 . A C 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=51;Dels=0.00;FS=23.926;HaplotypeScore=37.8096;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=4;MQRankSum=1.348;QD=1.80;ReadPosRankSum=-1.057;SB=-9.797e+01 GT:AD:DP:GQ:PL 0/1:25,22:51:99:122,0,310 chrII 6072 . T C 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=62;Dels=0.00;FS=5.965;HaplotypeScore=38.6594;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=6;MQRankSum=-2.492;QD=1.39;ReadPosRankSum=3.391;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,12:62:99:116,0,309 chrII 6073 . C T 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;DP=63;Dels=0.00;FS=1.509;HaplotypeScore=38.6594;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=6;MQRankSum=0.094;QD=1.17;ReadPosRankSum=0.346;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:52,11:63:99:104,0,335 chrII 6098 . C T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=78;Dels=0.00;FS=3.128;HaplotypeScore=16.1644;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=9;MQRankSum=-1.617;QD=0.23;ReadPosRankSum=2.743;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,16:78:48:48,0,758 chrII 6116 . T A 438.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;DP=75;Dels=0.00;FS=2.487;HaplotypeScore=8.6812;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=9;MQRankSum=-1.776;QD=5.84;ReadPosRankSum=-0.888;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:24,51:75:99:468,0,240 chrII 6128 . C T 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.863;DP=72;Dels=0.00;FS=1.445;HaplotypeScore=15.6460;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=7;MQRankSum=-0.566;QD=1.24;ReadPosRankSum=1.936;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:59,13:72:99:119,0,704 chrII 6129 . G T 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;DP=72;Dels=0.00;FS=1.727;HaplotypeScore=18.3872;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=7;MQRankSum=-0.940;QD=0.31;ReadPosRankSum=-0.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,10:72:52:52,0,746 chrII 6132 . A G 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=72;Dels=0.00;FS=1.445;HaplotypeScore=21.9368;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=7;MQRankSum=-1.091;QD=1.17;ReadPosRankSum=1.547;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:59,13:72:99:114,0,680 chrII 6134 . C T 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=21.9368;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=7;MQRankSum=-1.006;QD=1.28;ReadPosRankSum=1.269;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:57,13:71:99:121,0,706 chrII 6148 . T C 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=9.0113;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=6;MQRankSum=1.069;QD=3.13;ReadPosRankSum=1.069;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:31,16:47:99:177,0,354 chrII 6175 . T C 130.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=5.6376;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=1;QD=9.30;SB=-1.129e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:18:163,18,0 chrII 6198 . C T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=26;Dels=0.00;FS=19.320;HaplotypeScore=22.9369;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=5;MQRankSum=1.120;QD=1.92;ReadPosRankSum=2.553;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:22,4:26:80:80,0,131 chrII 6202 . C T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;DP=29;Dels=0.00;FS=18.468;HaplotypeScore=6.2585;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=6;MQRankSum=1.582;QD=1.59;ReadPosRankSum=1.906;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:25,4:29:76:76,0,180 chrII 6228 . C G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DP=44;Dels=0.00;FS=10.891;HaplotypeScore=11.4274;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=7;MQRankSum=-0.762;QD=1.98;ReadPosRankSum=0.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,13:44:99:117,0,226 chrII 6258 . C T 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DP=34;Dels=0.00;FS=19.349;HaplotypeScore=27.0724;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=5;MQRankSum=-0.247;QD=5.88;ReadPosRankSum=-1.056;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:15,19:34:63:230,0,63 chrII 6335 . C T 73.51 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.6488;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=6;QD=5.25;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:3,11:14:12:106,12,0 chrII 6367 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=6;MQRankSum=2.152;QD=0.60;ReadPosRankSum=-0.680;SB=-7.065e-03 GT:AD:DP:GQ:PL 0/1:17,5:22:36:43,0,36 chrII 6379 . A T 69.51 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=5;QD=3.16;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:12:102,12,0 chrII 6395 . C A 52.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.932;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=14.0254;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=4;MQRankSum=1.189;QD=2.18;ReadPosRankSum=0.951;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:10,14:24:7:82,0,7 chrII 6396 . T G 52.42 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=14.0254;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=4;MQRankSum=0.529;QD=2.18;ReadPosRankSum=-0.318;SB=0.218 GT:AD:DP:GQ:PL 0/1:3,21:24:7:82,0,7 chrII 6401 . C T 23.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=18.0520;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=5;MQRankSum=-1.231;QD=0.89;ReadPosRankSum=0.187;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:8,18:26:13:53,0,13 chrII 6434 . C T 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;DP=51;Dels=0.00;FS=78.943;HaplotypeScore=61.9793;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=4;MQRankSum=-0.934;QD=1.86;ReadPosRankSum=-0.709;SB=-2.995e+01 GT:AD:DP:GQ:PL 0/1:31,19:51:99:125,0,197 chrII 6439 . G A 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=54;Dels=0.00;FS=84.051;HaplotypeScore=67.6995;MLEAC=1;MLEAF=0.500;MQ=19.69;MQ0=4;MQRankSum=-2.794;QD=0.94;ReadPosRankSum=0.191;SB=0.965 GT:AD:DP:GQ:PL 0/1:39,15:54:81:81,0,248 chrII 6440 . G C,T 328.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=46.6740;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.69;MQ0=4;QD=6.07;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/2:0,34,20:54:76:388,115,76,273,0,258 chrII 6461 . T C 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DP=70;Dels=0.00;FS=47.332;HaplotypeScore=33.0686;MLEAC=1;MLEAF=0.500;MQ=18.93;MQ0=4;MQRankSum=1.145;QD=1.19;ReadPosRankSum=2.297;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,16:70:99:113,0,233 chrII 6468 . A G 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.375;DP=77;Dels=0.00;FS=142.135;HaplotypeScore=44.2688;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=4;MQRankSum=-3.205;QD=1.43;ReadPosRankSum=-1.076;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:39,38:77:99:140,0,233 chrII 6474 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.603;DP=80;Dels=0.00;FS=201.805;HaplotypeScore=69.1062;MLEAC=1;MLEAF=0.500;MQ=19.15;MQ0=4;MQRankSum=-3.209;QD=1.30;ReadPosRankSum=-2.263;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:40,40:80:99:134,0,237 chrII 6480 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=81;Dels=0.00;FS=52.967;HaplotypeScore=64.7802;MLEAC=1;MLEAF=0.500;MQ=19.04;MQ0=4;MQRankSum=2.237;QD=0.26;ReadPosRankSum=1.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,16:81:51:51,0,312 chrII 6481 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;DP=81;Dels=0.00;FS=62.789;HaplotypeScore=70.6629;MLEAC=1;MLEAF=0.500;MQ=19.04;MQ0=4;MQRankSum=2.965;QD=0.53;ReadPosRankSum=1.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,18:81:73:73,0,276 chrII 6488 . G A 317.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;DP=84;Dels=0.00;FS=32.740;HaplotypeScore=42.9935;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=4;MQRankSum=-1.699;QD=3.77;ReadPosRankSum=-0.410;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:17,65:84:20:347,0,20 chrII 6490 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;DP=84;Dels=0.00;FS=43.999;HaplotypeScore=45.0863;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=4;MQRankSum=3.283;QD=0.40;ReadPosRankSum=-0.405;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,12:84:64:64,0,303 chrII 6507 . C T 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DP=80;Dels=0.00;FS=67.556;HaplotypeScore=16.4774;MLEAC=1;MLEAF=0.500;MQ=19.80;MQ0=2;MQRankSum=-4.261;QD=1.30;ReadPosRankSum=1.539;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:34,46:80:99:134,0,109 chrII 6510 . A T 256 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=15.4827;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=2;QD=3.46;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:36:289,36,0 chrII 6533 . A T 132.06 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.7195;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=1;QD=2.16;SB=-2.341e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:21:165,21,0 chrII 6536 . C A 139.06 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.4436;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=1;QD=2.44;SB=-2.711e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:21:172,21,0 chrII 6537 . A T 31.23 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DP=59;Dels=0.00;FS=23.432;HaplotypeScore=11.1509;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=1;MQRankSum=-2.388;QD=0.53;ReadPosRankSum=-0.484;SB=22.77 GT:AD:DP:GQ:PL 0/1:9,35:59:9:60,0,9 chrII 6544 . T C 107.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=16.5324;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=1;MQRankSum=1.321;QD=1.79;ReadPosRankSum=1.674;SB=-1.921e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:18:140,18,0 chrII 6549 . C T 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DP=56;Dels=0.00;FS=28.917;HaplotypeScore=11.0155;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=1;MQRankSum=-3.802;QD=0.43;ReadPosRankSum=0.143;SB=-6.530e-03 GT:AD:DP:GQ:PL 0/1:27,29:56:53:54,0,53 chrII 6550 . T C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DP=56;Dels=0.00;FS=2.187;HaplotypeScore=13.7510;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=0;MQRankSum=0.489;QD=0.25;ReadPosRankSum=0.512;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:9,46:56:31:44,0,31 chrII 6581 . T C 135.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=69;Dels=0.00;FS=3.666;HaplotypeScore=75.6315;MLEAC=1;MLEAF=0.500;MQ=24.30;MQ0=0;MQRankSum=5.358;QD=1.96;ReadPosRankSum=-0.825;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:41,28:69:38:165,0,38 chrII 6584 . C T 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;DP=67;Dels=0.00;FS=3.695;HaplotypeScore=60.2233;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=5.222;QD=2.00;ReadPosRankSum=-0.083;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:40,27:67:85:164,0,85 chrII 6588 . T A 219.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;DP=64;Dels=0.00;FS=11.211;HaplotypeScore=68.0836;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=0;MQRankSum=3.169;QD=3.42;ReadPosRankSum=4.347;SB=-1.501e+02 GT:AD:DP:GQ:PL 0/1:24,40:64:12:249,0,12 chrII 6589 . T A 229.09 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;DP=64;Dels=0.00;FS=11.211;HaplotypeScore=68.0836;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=0;MQRankSum=2.115;QD=3.58;ReadPosRankSum=4.597;SB=-1.511e+02 GT:AD:DP:GQ:PL 0/1:24,40:64:14:259,0,14 chrII 6592 . C A 224.18 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.457;DP=64;Dels=0.00;FS=10.984;HaplotypeScore=39.3825;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=0;MQRankSum=3.022;QD=3.50;ReadPosRankSum=3.638;SB=-1.462e+02 GT:AD:DP:GQ:PL 0/1:23,41:64:11:254,0,11 chrII 6593 . G T 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;DP=64;Dels=0.00;FS=22.989;HaplotypeScore=52.9215;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=0;MQRankSum=3.918;QD=2.39;ReadPosRankSum=2.456;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:36,28:64:89:183,0,89 chrII 6595 . A C 142.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.554;DP=63;Dels=0.00;FS=22.561;HaplotypeScore=38.6189;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=0;MQRankSum=4.419;QD=2.25;ReadPosRankSum=2.026;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:35,28:63:94:172,0,94 chrII 6603 . C T 133.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;DP=62;Dels=0.00;FS=2.598;HaplotypeScore=63.5145;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=0;MQRankSum=4.846;QD=2.15;ReadPosRankSum=1.481;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:18,44:62:40:163,0,40 chrII 6605 . C T 219.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=62.5411;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=1.535;QD=3.71;ReadPosRankSum=1.639;SB=-7.802e+01 GT:AD:DP:GQ:PL 1/1:3,56:59:27:252,27,0 chrII 6607 . C G 206.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=69.2316;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=0.776;QD=3.49;ReadPosRankSum=2.191;SB=-7.302e+01 GT:AD:DP:GQ:PL 1/1:3,56:59:27:239,27,0 chrII 6609 . A C 207.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.776;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=76.0489;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=0;MQRankSum=1.259;QD=3.51;ReadPosRankSum=2.501;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:3,56:59:27:240,27,0 chrII 6618 . C G 129.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=30.6245;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=2.735;QD=2.19;ReadPosRankSum=-1.167;SB=-6.902e+01 GT:AD:DP:GQ:PL 0/1:14,45:59:22:159,0,22 chrII 6619 . T A 214.01 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=27.7043;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=3.69;SB=-7.902e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:27:247,27,0 chrII 6621 . T C 203.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=60;Dels=0.00;FS=6.320;HaplotypeScore=39.9266;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=0.990;QD=3.38;ReadPosRankSum=2.568;SB=-4.602e+01 GT:AD:DP:GQ:PL 1/1:5,55:60:27:236,27,0 chrII 6624 . C T 206.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=50.4377;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=0.062;QD=3.43;ReadPosRankSum=0.927;SB=-7.202e+01 GT:AD:DP:GQ:PL 1/1:2,58:60:27:239,27,0 chrII 6626 . C T 168.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=62;Dels=0.00;FS=5.138;HaplotypeScore=55.3047;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;MQRankSum=3.203;QD=2.71;ReadPosRankSum=0.934;SB=-4.913e+01 GT:AD:DP:GQ:PL 1/1:7,55:62:5:199,5,0 chrII 6631 . A G 143.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.188;DP=132;Dels=0.00;FS=9.759;HaplotypeScore=47.1570;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=2;MQRankSum=4.202;QD=1.08;ReadPosRankSum=5.279;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:70,62:132:65:173,0,65 chrII 6633 . G A 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.206;DP=132;Dels=0.00;FS=2.219;HaplotypeScore=49.3046;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=2;MQRankSum=3.560;QD=1.13;ReadPosRankSum=5.626;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:71,61:132:60:179,0,60 chrII 6637 . T C 171.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;DP=135;Dels=0.00;FS=2.799;HaplotypeScore=42.5226;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=2;MQRankSum=4.863;QD=1.27;ReadPosRankSum=2.515;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:31,104:135:37:201,0,37 chrII 6661 . A G 163.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;DP=127;Dels=0.00;FS=3.487;HaplotypeScore=31.7020;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=2;MQRankSum=-1.730;QD=1.28;ReadPosRankSum=1.353;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:69,58:127:22:193,0,22 chrII 6663 . C A 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DP=126;Dels=0.00;FS=3.452;HaplotypeScore=21.1422;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=2;MQRankSum=-0.068;QD=1.29;ReadPosRankSum=1.157;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:68,58:126:46:192,0,46 chrII 6680 . A G 216 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=3;QD=2.23;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,97:97:30:249,30,0 chrII 6698 . T G 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.101;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=21.0102;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=4;MQRankSum=0.653;QD=1.02;ReadPosRankSum=3.141;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,29:62:72:93,0,72 chrII 6699 . A T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.972;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=39.4490;MLEAC=1;MLEAF=0.500;MQ=23.10;MQ0=4;MQRankSum=-0.031;QD=1.13;ReadPosRankSum=3.297;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,29:62:91:100,0,91 chrII 6704 . T A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=45.5725;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=4;MQRankSum=0.844;QD=1.02;ReadPosRankSum=1.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,35:61:92:92,0,98 chrII 6705 . C T 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=45.5725;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=4;MQRankSum=0.809;QD=1.10;ReadPosRankSum=2.924;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,31:61:97:97,0,117 chrII 6706 . A G 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=43.2475;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=4;MQRankSum=0.928;QD=0.64;ReadPosRankSum=2.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,30:61:69:69,0,122 chrII 6754 . A T 226 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.7872;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=2;QD=4.91;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,25:46:33:259,33,0 chrII 6766 . A C 250 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=12.7063;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=2;QD=5.81;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:36:283,36,0 chrII 6769 . C T 244 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=22.5582;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=1;QD=5.81;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:36:277,36,0 chrII 6789 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=43.7379;MLEAC=1;MLEAF=0.500;MQ=19.33;MQ0=0;MQRankSum=1.104;QD=0.32;ReadPosRankSum=-1.151;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,5:68:52:52,0,222 chrII 6796 . C G 168.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DP=74;Dels=0.00;FS=6.028;HaplotypeScore=32.6128;MLEAC=1;MLEAF=0.500;MQ=18.23;MQ0=0;MQRankSum=-2.132;QD=2.27;ReadPosRankSum=0.131;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:8,66:74:53:198,0,53 chrII 6801 . C T 51.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DP=74;Dels=0.00;FS=6.541;HaplotypeScore=8.6035;MLEAC=1;MLEAF=0.500;MQ=18.12;MQ0=0;MQRankSum=2.838;QD=0.69;ReadPosRankSum=-0.815;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:66,7:74:81:81,0,196 chrII 6832 . C T 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;DP=68;Dels=0.00;FS=47.048;HaplotypeScore=2.7816;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=0;MQRankSum=-2.914;QD=1.38;ReadPosRankSum=-1.194;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:9,59:68:99:124,0,119 chrII 6841 . T A 291 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5649;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=1;QD=4.34;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:39:324,39,0 chrII 6848 . T C 80.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DP=67;Dels=0.00;FS=16.731;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.09;MQ0=1;MQRankSum=3.524;QD=1.19;ReadPosRankSum=0.601;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:61,6:67:99:110,0,100 chrII 6880 . C A 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DP=95;Dels=0.00;FS=11.599;HaplotypeScore=20.8692;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=1;MQRankSum=-0.473;QD=0.71;ReadPosRankSum=-1.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,14:95:97:97,0,909 chrII 6919 . A G 209.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;DP=100;Dels=0.00;FS=12.184;HaplotypeScore=30.8293;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=1;MQRankSum=-1.317;QD=2.09;ReadPosRankSum=1.566;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:74,26:100:99:239,0,1360 chrII 6920 . A T 219.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.572;DP=102;Dels=0.00;FS=16.124;HaplotypeScore=25.0876;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=1;MQRankSum=-3.227;QD=2.15;ReadPosRankSum=0.986;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:74,28:102:99:249,0,1338 chrII 6921 . G C 216.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;DP=107;Dels=0.00;FS=7.072;HaplotypeScore=25.8539;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=3;MQRankSum=-4.237;QD=2.02;ReadPosRankSum=-0.739;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:70,35:107:99:246,0,1342 chrII 6958 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.682;DP=162;Dels=0.00;FS=57.808;HaplotypeScore=85.0829;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=2;MQRankSum=1.550;QD=15.89;ReadPosRankSum=0.355;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:16,146:162:99:2607,255,0 chrII 6965 . T A,C 2180.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.711;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=20.9155;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.13;MQ0=2;MQRankSum=0.351;QD=13.21;ReadPosRankSum=1.626;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/2:1,46,118:165:99:2240,1423,1321,817,0,625 chrII 6982 . C A 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;DP=257;Dels=0.00;FS=24.690;HaplotypeScore=55.6830;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=2;MQRankSum=-2.995;QD=0.61;ReadPosRankSum=1.088;SB=-2.770e+02 GT:AD:DP:GQ:PL 0/1:186,66:257:99:187,0,3089 chrII 7006 . C G 4794.01 filter AC=2;AF=1.00;AN=2;DP=281;Dels=0.00;FS=0.000;HaplotypeScore=70.0007;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=7;QD=17.06;SB=-2.553e+03 GT:AD:DP:GQ:PL 1/1:0,279:281:99:4794,534,0 chrII 7015 . A T 492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=288;Dels=0.00;FS=1.824;HaplotypeScore=18.9596;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=12;MQRankSum=0.338;QD=1.71;ReadPosRankSum=2.897;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:231,57:288:99:522,0,2991 chrII 7033 . T C 632.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DP=264;Dels=0.00;FS=4.156;HaplotypeScore=136.7631;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=13;MQRankSum=-0.042;QD=2.39;ReadPosRankSum=2.263;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:200,64:264:99:662,0,2412 chrII 7044 . C T 465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;DP=242;Dels=0.00;FS=51.971;HaplotypeScore=16.1065;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=13;MQRankSum=3.563;QD=1.92;ReadPosRankSum=-0.806;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:192,50:242:99:495,0,2157 chrII 7075 . A G 855 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=130;Dels=0.00;FS=14.664;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=14;MQRankSum=-1.570;QD=6.58;ReadPosRankSum=2.816;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:3,126:130:99:888,105,0 chrII 7085 . C T 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;DP=68;Dels=0.00;FS=19.637;HaplotypeScore=2.4964;MLEAC=1;MLEAF=0.500;MQ=15.71;MQ0=10;MQRankSum=1.622;QD=3.50;ReadPosRankSum=1.708;SB=-1.688e+02 GT:AD:DP:GQ:PL 0/1:22,45:68:30:268,0,30 chrII 7100 . C T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.276;DP=60;Dels=0.00;FS=49.334;HaplotypeScore=15.1546;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=8;MQRankSum=-0.228;QD=0.72;ReadPosRankSum=4.656;SB=-6.246e-03 GT:AD:DP:GQ:PL 0/1:40,20:60:73:73,0,192 chrII 7116 . C A 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.149;DP=36;Dels=0.00;FS=6.410;HaplotypeScore=11.5664;MLEAC=2;MLEAF=1.00;MQ=16.56;MQ0=1;MQRankSum=0.324;QD=3.67;ReadPosRankSum=2.799;SB=-5.607e+01 GT:AD:DP:GQ:PL 1/1:3,33:36:21:165,21,0 chrII 7201 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=5.5958;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=0;QD=2.72;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrII 7209 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=0;MQRankSum=0.118;QD=2.07;ReadPosRankSum=0.825;SB=1.77 GT:AD:DP:GQ:PL 1/1:2,9:11:6:54,6,0 chrII 7225 . T A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=4.7259;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=0;MQRankSum=0.906;QD=1.56;ReadPosRankSum=-0.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,7:18:58:58,0,87 chrII 7236 . A G 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=0;MQRankSum=-1.903;QD=2.36;ReadPosRankSum=0.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,7:22:82:82,0,180 chrII 7247 . C T 423 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=16.27;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:51:456,51,0 chrII 7254 . T C 390 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=14.44;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:51:423,51,0 chrII 7312 . G A 264.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=103;Dels=0.00;FS=1.573;HaplotypeScore=29.7911;MLEAC=1;MLEAF=0.500;MQ=24.48;MQ0=6;MQRankSum=-0.091;QD=2.56;ReadPosRankSum=1.855;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:59,44:103:99:294,0,579 chrII 7334 . A G 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=64.8719;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=7;MQRankSum=-0.140;QD=1.28;ReadPosRankSum=0.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,28:123:99:188,0,811 chrII 7345 . T C 516.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312;DP=141;Dels=0.00;FS=6.912;HaplotypeScore=90.7776;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=6;MQRankSum=0.385;QD=3.66;ReadPosRankSum=1.831;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:73,67:141:99:546,0,615 chrII 7351 . A G 392.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=65.3822;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=7;MQRankSum=3.112;QD=2.56;ReadPosRankSum=1.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,39:153:99:422,0,614 chrII 7368 . C T 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.565;DP=139;Dels=0.00;FS=1.148;HaplotypeScore=47.9620;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=9;MQRankSum=-0.379;QD=1.68;ReadPosRankSum=0.154;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:91,47:139:99:263,0,762 chrII 7369 . T A 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=137;Dels=0.00;FS=6.717;HaplotypeScore=48.7507;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=9;MQRankSum=3.947;QD=0.66;ReadPosRankSum=-1.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,18:137:99:121,0,949 chrII 7408 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.467;DP=121;Dels=0.00;FS=4.545;HaplotypeScore=13.5971;MLEAC=1;MLEAF=0.500;MQ=24.39;MQ0=11;MQRankSum=2.333;QD=0.20;ReadPosRankSum=1.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,19:121:54:54,0,740 chrII 7420 . C T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;DP=111;Dels=0.00;FS=2.290;HaplotypeScore=18.7745;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=10;MQRankSum=1.892;QD=0.36;ReadPosRankSum=2.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,17:111:70:70,0,426 chrII 7647 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=31;Dels=0.00;FS=2.218;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=14.24;MQ0=13;MQRankSum=1.264;QD=0.84;ReadPosRankSum=0.796;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,6:31:56:56,0,66 chrII 7997 . G A 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=5;QD=2.90;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:12:105,12,0 chrII 8001 . T G 80.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9174;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=5;QD=3.22;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:1,24:25:12:113,12,0 chrII 8006 . A G 82.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;DP=25;Dels=0.00;FS=29.863;HaplotypeScore=2.9174;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=5;MQRankSum=2.793;QD=3.30;ReadPosRankSum=-2.706;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:10,15:25:12:115,12,0 chrII 8009 . A G 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;DP=25;Dels=0.00;FS=25.092;HaplotypeScore=2.9174;MLEAC=2;MLEAF=1.00;MQ=22.18;MQ0=5;MQRankSum=2.516;QD=2.98;ReadPosRankSum=-1.773;SB=-4.146e-01 GT:AD:DP:GQ:PL 1/1:10,15:25:12:107,12,0 chrII 8034 . C T 82.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=12;Dels=0.00;FS=15.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=4;MQRankSum=2.017;QD=6.88;ReadPosRankSum=0.421;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,4:12:12:115,12,0 chrII 8035 . C T 83.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=12;Dels=0.00;FS=15.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=4;MQRankSum=2.017;QD=6.96;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,4:12:12:116,12,0 chrII 8037 . C T 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;DP=12;Dels=0.00;FS=15.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=4;MQRankSum=2.017;QD=6.38;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,4:12:12:109,12,0 chrII 8038 . A T 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;DP=11;Dels=0.00;FS=15.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.31;MQ0=3;MQRankSum=2.017;QD=7.05;ReadPosRankSum=0.421;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,4:11:12:110,12,0 chrII 8042 . G A 82.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=12;Dels=0.00;FS=15.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=4;MQRankSum=2.017;QD=6.88;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,4:12:12:115,12,0 chrII 8073 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=48;Dels=0.00;FS=84.052;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=12;MQRankSum=4.574;QD=0.50;ReadPosRankSum=-0.653;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:22,26:48:6:55,6,0 chrII 8161 . C G 410 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.316;DP=76;Dels=0.00;FS=47.347;HaplotypeScore=61.9543;MLEAC=2;MLEAF=1.00;MQ=26.39;MQ0=8;MQRankSum=3.323;QD=5.39;ReadPosRankSum=1.681;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:10,66:76:48:443,48,0 chrII 8174 . T A 438 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.311;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1186;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=9;MQRankSum=-0.376;QD=5.47;ReadPosRankSum=4.311;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:7,73:80:51:471,51,0 chrII 8180 . G A 633 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.183;DP=90;Dels=0.00;FS=34.315;HaplotypeScore=6.9085;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=16;MQRankSum=2.383;QD=7.03;ReadPosRankSum=-1.883;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:18,72:90:72:666,72,0 chrII 8186 . C T 669 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=81;Dels=0.00;FS=18.261;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=13;MQRankSum=1.681;QD=8.26;ReadPosRankSum=-1.319;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:7,71:81:75:702,75,0 chrII 8187 . T C 627 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=83;Dels=0.00;FS=10.733;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=13;MQRankSum=2.146;QD=7.55;ReadPosRankSum=1.102;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:5,78:83:72:660,72,0 chrII 8216 . C G 662 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;DP=89;Dels=0.00;FS=60.609;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=14;MQRankSum=3.335;QD=7.44;ReadPosRankSum=1.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,75:89:78:695,78,0 chrII 8221 . G A 670 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=80;Dels=0.00;FS=25.399;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=14;MQRankSum=2.374;QD=8.37;ReadPosRankSum=0.399;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,76:80:75:703,75,0 chrII 8222 . T C 642 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.298;DP=80;Dels=0.00;FS=25.399;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=14;MQRankSum=2.374;QD=8.02;ReadPosRankSum=0.437;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,76:80:78:675,78,0 chrII 8238 . T C 374 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DP=61;Dels=0.00;FS=10.927;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=12;MQRankSum=1.743;QD=6.13;ReadPosRankSum=0.278;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:9,52:61:45:407,45,0 chrII 8250 . A G 249 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369;DP=51;Dels=0.00;FS=28.698;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=12;MQRankSum=2.324;QD=4.88;ReadPosRankSum=-2.260;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:14,37:51:30:282,30,0 chrII 8253 . C T 270 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.423;DP=56;Dels=0.00;FS=29.759;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=12;MQRankSum=2.338;QD=4.82;ReadPosRankSum=-2.113;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:14,42:56:33:303,33,0 chrII 8280 . G A 167.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;DP=28;Dels=0.00;FS=25.453;HaplotypeScore=3.7877;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=1;MQRankSum=2.268;QD=5.97;ReadPosRankSum=2.176;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,25:28:21:200,21,0 chrII 8281 . G C 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DP=28;Dels=0.00;FS=25.453;HaplotypeScore=3.7877;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=1;MQRankSum=2.268;QD=5.61;ReadPosRankSum=2.176;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,25:28:21:190,21,0 chrII 8283 . A G 164.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=28;Dels=0.00;FS=25.453;HaplotypeScore=3.7877;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=1;MQRankSum=2.268;QD=5.86;ReadPosRankSum=2.176;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,25:28:21:197,21,0 chrII 8288 . T A 163.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=31;Dels=0.00;FS=11.761;HaplotypeScore=4.5764;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=1;MQRankSum=1.455;QD=5.26;ReadPosRankSum=1.954;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,28:31:21:196,21,0 chrII 8315 . G A 185.01 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.17;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:27:218,27,0 chrII 8316 . A T 227 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.57;SB=-3.002e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:30:260,30,0 chrII 8317 . A G 219 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.30;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:30:252,30,0 chrII 8328 . G C 262 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:33:295,33,0 chrII 8331 . C T 301 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.40;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:36:334,36,0 chrII 8496 . A G 2496 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=23.33;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2529,273,0 chrII 9432 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=0.94;SB=-2.698e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:9:78,9,0 chrII 9541 . T C 586 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.619;QD=20.93;ReadPosRankSum=1.609;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:69:619,69,0 chrII 9560 . C T 569 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.07;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:602,63,0 chrII 9679 . A G 584 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=14.97;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:617,69,0 chrII 9688 . C G 672 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=14.93;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:705,78,0 chrII 9710 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=16.21;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:957,102,0 chrII 9859 . T G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.551;QD=21.04;ReadPosRankSum=1.693;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1906,213,0 chrII 9932 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.07;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1902,210,0 chrII 10136 . G T 1565 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.32;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1598,174,0 chrII 10210 . G A 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.046;QD=17.96;ReadPosRankSum=1.094;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1452,156,0 chrII 10401 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.39;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1690,177,0 chrII 10572 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.874;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.596;QD=20.66;ReadPosRankSum=1.675;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1314,144,0 chrII 10621 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.74;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1625,171,0 chrII 10627 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.17;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1727,183,0 chrII 10674 . A C 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=81;Dels=0.00;FS=5.351;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.463;QD=19.81;ReadPosRankSum=2.763;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1638,177,0 chrII 10708 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=56.4162;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=17.51;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1259,135,0 chrII 10783 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.8279;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=17.46;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1482,156,0 chrII 10795 . T A 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=-0.527;QD=17.03;ReadPosRankSum=1.657;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1600,174,0 chrII 10801 . G T 1456 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.54;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1489,159,0 chrII 10943 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.47;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2523,285,0 chrII 11039 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.58;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1943,225,0 chrII 11072 . T C 1576 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.46;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1609,180,0 chrII 11360 . T A 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=4.8998;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=0.379;QD=17.88;ReadPosRankSum=1.699;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1910,204,0 chrII 11361 . G C 1841 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7320;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.87;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1874,204,0 chrII 11435 . G A 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5531;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.137;QD=19.33;ReadPosRankSum=-0.402;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1985,207,0 chrII 11470 . T C 2027 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.27;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2060,225,0 chrII 11545 . T C 2578 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.42;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2611,291,0 chrII 11618 . T C 2165 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.23;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2198,246,0 chrII 11738 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.59;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1247,138,0 chrII 11749 . T C 959 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=13.90;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:992,108,0 chrII 11753 . T C 926 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.62;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:959,108,0 chrII 11930 . T G 2091 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3782;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.91;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2124,237,0 chrII 12017 . G T 1463 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.04;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1496,159,0 chrII 12122 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.17;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1606,174,0 chrII 12208 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.12;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2091,222,0 chrII 12328 . T G 1664 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.89;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1697,186,0 chrII 12485 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.29;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1383,153,0 chrII 12511 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6069;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.192;QD=17.41;ReadPosRankSum=1.395;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1304,147,0 chrII 12728 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.05;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1877,204,0 chrII 12839 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.48;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2124,237,0 chrII 13061 . G T 1757 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1790,192,0 chrII 13169 . A C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.218;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.664;QD=20.58;ReadPosRankSum=1.700;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2256,258,0 chrII 13189 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.05;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2379,267,0 chrII 13313 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.92;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1567,171,0 chrII 13609 . G T 1588 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.69;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1621,174,0 chrII 14472 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.62;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1141,123,0 chrII 14847 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.69;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1150,126,0 chrII 15222 . T A 1410 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.14;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1443,153,0 chrII 15234 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.024;QD=17.53;ReadPosRankSum=1.685;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1330,147,0 chrII 15510 . G T 1472 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.73;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1505,162,0 chrII 15830 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.278;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.466;QD=21.64;ReadPosRankSum=1.703;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2608,285,0 chrII 16530 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.5984;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.11;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2135,225,0 chrII 16749 . G A 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.665;QD=17.73;ReadPosRankSum=1.698;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1859,198,0 chrII 17349 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.54;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1676,177,0 chrII 18082 . A T 3812.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=16.0679;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.317;QD=20.39;ReadPosRankSum=1.695;SB=-2.064e+03 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3812,417,0 chrII 18175 . T C 3801.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.498;QD=23.76;ReadPosRankSum=1.689;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3801,423,0 chrII 18513 . A G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.127;QD=18.78;ReadPosRankSum=2.941;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2268,249,0 chrII 19019 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.32;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1504,159,0 chrII 19470 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.03;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2052,228,0 chrII 19967 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.455;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.782;QD=19.82;ReadPosRankSum=1.701;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2273,249,0 chrII 20268 . C T 3030 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.49;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3063,330,0 chrII 20442 . G C 1587 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.24;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1620,180,0 chrII 20445 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.48;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1669,183,0 chrII 20520 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.25;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2150,231,0 chrII 20592 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.183;DP=109;Dels=0.00;FS=8.353;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-0.733;QD=16.56;ReadPosRankSum=3.360;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:1838,201,0 chrII 21325 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2646,279,0 chrII 21480 . G A 3550.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3550,375,0 chrII 21769 . T G 5278.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.140;DP=238;Dels=0.00;FS=27.969;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.344;QD=22.18;ReadPosRankSum=4.170;SB=-2.016e+03 GT:AD:DP:GQ:PL 1/1:6,229:238:99:5278,594,0 chrII 21881 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.47;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1815,192,0 chrII 21977 . C A 3172 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.66;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3205,357,0 chrII 21979 . C A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.79;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3378,363,0 chrII 22280 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.69;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1236,135,0 chrII 22296 . C G 879 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=16.58;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:912,102,0 chrII 22415 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.05;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1957,219,0 chrII 23230 . A G 2317 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.15;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2350,252,0 chrII 23234 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.24;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2284,243,0 chrII 23630 . G T 2244 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.79;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2277,243,0 chrII 23766 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=15.33;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1045,114,0 chrII 23961 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.96;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1390,147,0 chrII 24209 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.83;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1951,216,0 chrII 24448 . A C 1649 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.42;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1682,183,0 chrII 24836 . C T 3802.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.53;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3802,411,0 chrII 24859 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1310;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.49;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3117,330,0 chrII 25105 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.32;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2360,249,0 chrII 25108 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.4728;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.17;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2232,243,0 chrII 25345 . A G 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.174;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.090;QD=19.37;ReadPosRankSum=1.655;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2648,303,0 chrII 25978 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.69;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2007,228,0 chrII 26029 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1678,183,0 chrII 26272 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.15;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2359,261,0 chrII 26500 . A C 2107 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2140,237,0 chrII 26815 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.530;QD=20.83;ReadPosRankSum=1.697;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2074,228,0 chrII 27232 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.94;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2190,252,0 chrII 27816 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.92;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2707,291,0 chrII 27850 . T C 2697 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.29;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2730,303,0 chrII 28538 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.83;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1116,123,0 chrII 28912 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.27;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1414,156,0 chrII 28960 . C G 1057 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.22;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1090,123,0 chrII 29190 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=4.063;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.206;QD=21.15;ReadPosRankSum=1.688;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1704,189,0 chrII 29266 . C A 1903 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=20.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1936,204,0 chrII 29269 . A G 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=95;Dels=0.00;FS=6.849;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-0.852;QD=19.28;ReadPosRankSum=2.371;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1865,207,0 chrII 29361 . T C 2426 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=21.66;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2459,273,0 chrII 29377 . A C 2345 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=21.51;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2378,258,0 chrII 30023 . A T 50.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=10.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:9:83,9,0 chrII 30040 . T C 53.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=3;QD=9.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:86,9,0 chrII 30101 . C A 55.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=3;QD=9.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:88,9,0 chrII 30251 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.47;MQ0=15;QD=0.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:6:47,6,0 chrII 30258 . T G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.26;MQ0=16;QD=0.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:6:47,6,0 chrII 30269 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.26;MQ0=16;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:6:48,6,0 chrII 30276 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.57;MQ0=20;QD=0.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:6:49,6,0 chrII 31025 . A G 73.51 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=35;QD=1.47;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,49:50:12:106,12,0 chrII 31062 . A G 524 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8351;MLEAC=2;MLEAF=1.00;MQ=17.70;MQ0=46;QD=6.55;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:3,76:80:66:557,66,0 chrII 31097 . G A 980 filter AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.7029;MLEAC=2;MLEAF=1.00;MQ=15.92;MQ0=74;QD=6.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1013,108,0 chrII 31158 . G A 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=1;MLEAF=0.500;MQ=12.30;MQ0=103;MQRankSum=-0.218;QD=0.84;ReadPosRankSum=-0.031;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,58:161:99:166,0,234 chrII 31193 . C T 249 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.74;MQ0=59;QD=3.07;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,79:81:30:282,30,0 chrII 31198 . T A,C 185.56 filter AC=1,1;AF=0.500,0.500;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=12.60;MQ0=50;QD=2.65;SB=6.08 GT:AD:DP:GQ:PL 1/2:0,22,48:70:28:243,190,184,52,0,28 chrII 31236 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.83;MQ0=5;QD=1.65;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrII 31242 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=3;QD=1.98;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:49,6,0 chrII 31480 . A G 1753 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=420;Dels=0.00;FS=5.836;HaplotypeScore=6.6508;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=75;MQRankSum=-0.557;QD=4.17;ReadPosRankSum=1.722;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,419:420:99:1786,207,0 chrII 31486 . C T 1274 filter AC=2;AF=1.00;AN=2;DP=390;Dels=0.00;FS=0.000;HaplotypeScore=4.3282;MLEAC=2;MLEAF=1.00;MQ=19.28;MQ0=75;QD=3.27;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,390:390:99:1307,141,0 chrII 31525 . T C 748 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=72;QD=7.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:87:781,87,0 chrII 31561 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=6;QD=2.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,6:8:6:54,6,0 chrII 31742 . T G 47.97 filter AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=6.16;MQ0=81;QD=0.22;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,213:214:9:80,9,0 chrII 31834 . T C 181.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=1;MLEAF=0.500;MQ=10.85;MQ0=50;MQRankSum=-2.539;QD=1.09;ReadPosRankSum=-0.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,97:166:99:211,0,107 chrII 31870 . G A 315 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=15.95;MQ0=18;QD=3.84;SB=-8.666e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:36:348,36,0 chrII 35631 . C T 635 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.68;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:668,72,0 chrII 35840 . G A 78.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=8.72;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:111,12,0 chrII 36362 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.94;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1918,207,0 chrII 36389 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-0.383;QD=24.08;ReadPosRankSum=1.696;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2345,258,0 chrII 36517 . T C 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=2.274;QD=9.29;ReadPosRankSum=0.155;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:72:553,72,0 chrII 36518 . C A 528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=1.670;QD=9.26;ReadPosRankSum=0.152;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:72:561,72,0 chrII 37454 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2055;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.39;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2520,264,0 chrII 37628 . C T 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.5966;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.278;QD=22.69;ReadPosRankSum=-1.423;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2574,261,0 chrII 38081 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=5.291;HaplotypeScore=8.0413;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.739;QD=18.33;ReadPosRankSum=2.105;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:4,123:128:99:2379,235,0 chrII 39234 . A T 1044 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.47;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1077,114,0 chrII 39405 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4972;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.00;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2058,219,0 chrII 39435 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.75;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1686,192,0 chrII 39607 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=4.063;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.381;QD=24.57;ReadPosRankSum=1.688;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1999,216,0 chrII 40179 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=77;Dels=0.00;FS=5.924;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.040;QD=19.56;ReadPosRankSum=2.698;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1539,174,0 chrII 40260 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.09;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1229,129,0 chrII 40329 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.08;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1197,126,0 chrII 40479 . T C 395 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.95;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:428,48,0 chrII 40554 . A G 670 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.29;MQ0=0;QD=18.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:78:703,78,0 chrII 40699 . G A 924 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:957,108,0 chrII 40720 . C T 871 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:96:904,96,0 chrII 40882 . T C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.467;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4215;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.500;QD=22.47;ReadPosRankSum=2.881;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:99:1359,150,0 chrII 40983 . C T 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.455;QD=20.65;ReadPosRankSum=-0.162;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1582,145,0 chrII 40992 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.54;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1594,171,0 chrII 41046 . T C 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0116;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.462;QD=20.59;ReadPosRankSum=1.694;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1886,207,0 chrII 41182 . A G 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.056;QD=19.80;ReadPosRankSum=1.605;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1676,189,0 chrII 41424 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.61;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1827,207,0 chrII 41484 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.26;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1883,201,0 chrII 41506 . C A 1940 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8971;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.56;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1973,210,0 chrII 41766 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.57;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1638,183,0 chrII 41913 . A G 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6953;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.736;QD=18.99;ReadPosRankSum=1.689;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1552,174,0 chrII 42187 . C A 1577 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.5292;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1610,171,0 chrII 42438 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1742,186,0 chrII 42921 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1543,165,0 chrII 43179 . G A 945 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.00;MQ0=0;QD=21.98;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:978,105,0 chrII 43330 . G A 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;DP=92;Dels=0.00;FS=6.368;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.895;QD=20.16;ReadPosRankSum=1.313;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1888,210,0 chrII 43348 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.07;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1921,222,0 chrII 43654 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=3.432;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.091;QD=19.11;ReadPosRankSum=1.668;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2116,240,0 chrII 43688 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.68;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2504,273,0 chrII 43708 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.609;QD=20.58;ReadPosRankSum=1.670;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2317,255,0 chrII 44047 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.89;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1391,147,0 chrII 44098 . G T 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.78;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1633,171,0 chrII 44904 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.29;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1537,177,0 chrII 44974 . T C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=95;Dels=0.00;FS=16.611;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.860;QD=16.86;ReadPosRankSum=2.861;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:1635,177,0 chrII 45009 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.02;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2030,213,0 chrII 45075 . C T 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.901;DP=95;Dels=0.00;FS=9.306;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.159;QD=18.76;ReadPosRankSum=-2.725;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1815,192,0 chrII 45178 . A G 1330 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.46;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1363,156,0 chrII 45269 . T C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=4.843;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.426;QD=20.07;ReadPosRankSum=-0.028;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1257,138,0 chrII 45824 . T C 851 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.39;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:884,99,0 chrII 45853 . A G 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.552;QD=17.91;ReadPosRankSum=2.053;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1036,114,0 chrII 46603 . T C 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.708;QD=21.65;ReadPosRankSum=2.305;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1505,168,0 chrII 46720 . T C 1354 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.51;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1387,153,0 chrII 46755 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.550;QD=19.96;ReadPosRankSum=1.696;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1929,213,0 chrII 47062 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.27;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2662,288,0 chrII 47244 . A T 2450 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.4224;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.70;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2483,267,0 chrII 47612 . T C 2720 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.42;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2753,303,0 chrII 47900 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.12;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2335,252,0 chrII 47971 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.00;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1937,204,0 chrII 48506 . T C 1238 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.34;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1271,138,0 chrII 48696 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.61;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1764,189,0 chrII 48762 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.085;QD=23.48;ReadPosRankSum=1.675;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1465,159,0 chrII 48881 . G C 1290 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.17;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1323,144,0 chrII 48887 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.73;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1345,144,0 chrII 49026 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.90;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1904,201,0 chrII 49031 . T C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.339;QD=18.17;ReadPosRankSum=1.657;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1705,189,0 chrII 49603 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.83;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2385,267,0 chrII 49789 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1749,195,0 chrII 49999 . A G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.667;QD=19.92;ReadPosRankSum=1.667;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2184,243,0 chrII 50569 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.70;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1905,207,0 chrII 50601 . C A 1511 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.42;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1544,165,0 chrII 50947 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=3.106;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.054;QD=18.72;ReadPosRankSum=1.694;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1793,204,0 chrII 50954 . G C 1880 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.66;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1913,213,0 chrII 51262 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.84;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2471,276,0 chrII 51316 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=92;Dels=0.00;FS=7.459;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.623;QD=19.76;ReadPosRankSum=2.367;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,87:92:99:1851,213,0 chrII 51528 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.12;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2025,213,0 chrII 51538 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.51;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1802,201,0 chrII 51976 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.35;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1888,204,0 chrII 52083 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0175;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.59;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1031,120,0 chrII 52217 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.39;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1399,147,0 chrII 52327 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.309;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.3603;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.163;QD=21.96;ReadPosRankSum=1.543;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1548,168,0 chrII 53037 . G A 3292.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.03;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3292,348,0 chrII 53512 . A C 1818 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7288;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.55;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1851,204,0 chrII 53554 . G C 1854 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1887,216,0 chrII 53802 . A C 1526 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.08;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1559,174,0 chrII 53815 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.91;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1866,198,0 chrII 54034 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.93;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1833,195,0 chrII 54042 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.81;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1781,189,0 chrII 54156 . T C 3358.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.24;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3358,363,0 chrII 54607 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1659,183,0 chrII 54682 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.69;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1877,207,0 chrII 54988 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.29;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1407,153,0 chrII 55192 . A T 1268 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1301,141,0 chrII 55231 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1181,129,0 chrII 55275 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.52;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1647,174,0 chrII 55537 . G C 1946 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1979,213,0 chrII 55693 . A C 2083 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2116,240,0 chrII 56050 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.34;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1830,201,0 chrII 56575 . A T 1331 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.18;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1364,147,0 chrII 56942 . A T 1119 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1152,123,0 chrII 57316 . T C 1199 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1232,141,0 chrII 57675 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2014,213,0 chrII 57742 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2113,228,0 chrII 57904 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1378,156,0 chrII 58112 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1194,138,0 chrII 58450 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.60;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2001,222,0 chrII 58496 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.417;QD=20.30;ReadPosRankSum=1.688;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1637,180,0 chrII 58609 . T C 2388 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2421,276,0 chrII 58787 . A T 1510 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.27;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1543,168,0 chrII 59164 . G C 1739 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1772,201,0 chrII 59191 . G C 1606 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.86;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1639,180,0 chrII 59525 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.51;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1428,162,0 chrII 60386 . G A 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7518;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=1.649;QD=22.36;ReadPosRankSum=1.565;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1934,216,0 chrII 60470 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.07;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1550,168,0 chrII 60478 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.63;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1393,156,0 chrII 60504 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.99;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1256,141,0 chrII 60545 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=16.14;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1050,111,0 chrII 60551 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.68;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1041,114,0 chrII 60786 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.92;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1267,138,0 chrII 60789 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.00;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1309,138,0 chrII 60829 . C A 1397 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.3740;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.17;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1430,153,0 chrII 60917 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.28;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:798,87,0 chrII 61024 . C A 767 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=17.43;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:800,87,0 chrII 61031 . T C 708 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=31.4036;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=18.15;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:39:87:741,87,0 chrII 61067 . G A 515 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=13.21;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:548,57,0 chrII 61071 . G A 496 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=12.10;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:57:529,57,0 chrII 61089 . T A 714 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=13.47;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:747,81,0 chrII 61103 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=13.48;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:909,105,0 chrII 61199 . A T 1569 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=5.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.433;QD=19.61;ReadPosRankSum=1.689;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1602,171,0 chrII 61202 . C T 1530 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.87;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1563,165,0 chrII 61208 . C T 1483 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.51;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1516,162,0 chrII 61287 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.79;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1811,192,0 chrII 61304 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.93;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1985,213,0 chrII 61376 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.331;QD=23.83;ReadPosRankSum=1.696;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2297,249,0 chrII 61810 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1136;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.55;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1695,183,0 chrII 62000 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.462;QD=20.86;ReadPosRankSum=1.678;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1368,147,0 chrII 62709 . G T 1010 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.70;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1043,111,0 chrII 62891 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.96;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:951,105,0 chrII 62919 . G A 813 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.30;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:93:846,93,0 chrII 63024 . A C 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=-1.237;QD=17.70;ReadPosRankSum=2.357;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:971,105,0 chrII 63039 . T A 734 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=15.62;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:767,81,0 chrII 63053 . G A 607 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=15.97;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:640,69,0 chrII 63083 . A G 665 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=15.83;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:698,81,0 chrII 63138 . G C 950 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.79;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:983,111,0 chrII 63295 . G T 732 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=15.57;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:765,84,0 chrII 63304 . T A 704 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=16.37;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:737,81,0 chrII 63305 . G C 689 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=16.02;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:722,84,0 chrII 63831 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.45;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1449,159,0 chrII 63857 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.765;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.477;QD=20.76;ReadPosRankSum=1.682;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1486,162,0 chrII 64139 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.58;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1523,165,0 chrII 64291 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.7801;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.92;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1581,168,0 chrII 64716 . C G 1037 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.94;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1070,117,0 chrII 64864 . A C 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4769;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.423;QD=21.13;ReadPosRankSum=1.655;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:85:984,85,0 chrII 65145 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.83;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1401,153,0 chrII 65204 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6838;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.73;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1902,219,0 chrII 65315 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1117,126,0 chrII 65450 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.57;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1344,144,0 chrII 65468 . T C 1111 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.63;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1144,126,0 chrII 65585 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.00;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,195,0 chrII 65975 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.32;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1909,210,0 chrII 66052 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.37;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2464,267,0 chrII 66467 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.14;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2422,258,0 chrII 66479 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=109;Dels=0.00;FS=2.871;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.923;QD=18.91;ReadPosRankSum=2.359;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2094,234,0 chrII 66566 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=15.90;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1178,135,0 chrII 67256 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:973,108,0 chrII 67843 . T C 2169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=21.26;ReadPosRankSum=1.664;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2202,243,0 chrII 68834 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.24;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2017,216,0 chrII 69128 . C G 3074 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.6793;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.47;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3107,339,0 chrII 69616 . C T 876 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=11.38;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:909,99,0 chrII 69648 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=16.15;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1842,216,0 chrII 69772 . A G 3352.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.65;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3352,372,0 chrII 69817 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.04;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1747,201,0 chrII 69823 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0854;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.88;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1481,159,0 chrII 69840 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6732;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.35;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1423,153,0 chrII 69901 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.97;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2067,225,0 chrII 70525 . T C 3640.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.1585;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.002;QD=21.80;ReadPosRankSum=1.711;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,165:167:99:3640,411,0 chrII 70638 . A G 3734.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=18.0595;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.09;SB=-1.985e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3734,408,0 chrII 71395 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=16.09;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1143,123,0 chrII 71420 . T C 875 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=14.83;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:908,99,0 chrII 71494 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.45;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1045,114,0 chrII 71634 . A T 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.628;QD=14.38;ReadPosRankSum=1.628;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:57:522,57,0 chrII 71636 . T A 534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=6.154;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;MQRankSum=-1.208;QD=16.18;ReadPosRankSum=1.628;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:60:567,60,0 chrII 72018 . C G 1242 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.70;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1275,147,0 chrII 72096 . A T 2183 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.05;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2216,240,0 chrII 72117 . A G 2301 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.54;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2334,258,0 chrII 72522 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=15.8034;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.53;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2650,288,0 chrII 72594 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.32;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2431,270,0 chrII 73337 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.38;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:995,108,0 chrII 73354 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.04;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:995,108,0 chrII 73359 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.16;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:972,108,0 chrII 73472 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.36;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1392,156,0 chrII 73697 . A C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.401;QD=19.95;ReadPosRankSum=1.704;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,120:126:99:2547,282,0 chrII 73963 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.86;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1721,180,0 chrII 74303 . C A 1780 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.56;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1813,201,0 chrII 74852 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.56;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2850,309,0 chrII 74853 . A T 2727 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.62;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2760,309,0 chrII 74920 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.04;FS=0.000;HaplotypeScore=34.2949;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.35;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1456,153,0 chrII 74963 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.03;FS=0.000;HaplotypeScore=25.0398;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.74;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1395,153,0 chrII 75091 . T A 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=101;Dels=0.00;FS=3.533;HaplotypeScore=11.5618;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.018;QD=16.94;ReadPosRankSum=1.696;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1744,189,0 chrII 75564 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0920;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=21.25;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2073,219,0 chrII 76203 . A G 1762 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.751;QD=17.11;ReadPosRankSum=2.253;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,100:103:99:1795,204,0 chrII 76212 . C T 1814 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.96;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1847,198,0 chrII 76213 . C T 1835 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.99;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1868,198,0 chrII 76314 . T G 2645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=6.265;HaplotypeScore=8.2909;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.320;QD=20.50;ReadPosRankSum=2.333;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2678,309,0 chrII 76362 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=20.9828;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.57;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2830,303,0 chrII 76470 . C A 1995 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.04;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2028,216,0 chrII 76491 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.36;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1621,171,0 chrII 76662 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.54;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1405,150,0 chrII 76869 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.59;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1236,132,0 chrII 77577 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.67;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1459,165,0 chrII 77651 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.90;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1538,174,0 chrII 77699 . T A 1750 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=15.91;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1783,189,0 chrII 77713 . A T 1913 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=15.43;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1946,207,0 chrII 77714 . G C 1838 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.94;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1871,204,0 chrII 77748 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=136;Dels=0.00;FS=3.008;HaplotypeScore=13.5348;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.468;QD=15.05;ReadPosRankSum=2.376;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:2,132:136:99:2080,234,0 chrII 77835 . A C 3075 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.95;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3108,345,0 chrII 78183 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.78;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3235,357,0 chrII 78288 . T C 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.231;QD=20.78;ReadPosRankSum=1.595;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1612,177,0 chrII 78624 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.30;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1524,171,0 chrII 78682 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.94;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1547,168,0 chrII 78701 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2732;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.20;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1771,189,0 chrII 78963 . T C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.977;QD=21.92;ReadPosRankSum=1.688;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1743,192,0 chrII 79041 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.37;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1785,189,0 chrII 79464 . A G 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.326;QD=22.06;ReadPosRankSum=1.632;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1555,171,0 chrII 79632 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.98;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1671,183,0 chrII 79692 . A C 1282 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.72;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1315,144,0 chrII 79837 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1530,159,0 chrII 80327 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3205;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.88;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2595,279,0 chrII 80678 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.26;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1512,165,0 chrII 80838 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.68;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1529,165,0 chrII 81655 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.60;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2484,270,0 chrII 81997 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3512;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.40;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1799,201,0 chrII 82276 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2033,228,0 chrII 82573 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.58;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1668,186,0 chrII 83152 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=6.868;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.673;QD=20.13;ReadPosRankSum=2.396;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1885,219,0 chrII 83470 . G T 2746 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7342;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.27;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2779,294,0 chrII 83602 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,186,0 chrII 83698 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.91;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2089,228,0 chrII 83944 . G A 2615 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.1850;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.79;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2648,285,0 chrII 84352 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.91;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:84:99:1640,180,0 chrII 84553 . C T 3289.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.18;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3289,360,0 chrII 84589 . C G 1885 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=16.83;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1918,216,0 chrII 84590 . C G 1936 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.13;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1969,213,0 chrII 84631 . C G 1639 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.90;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1672,183,0 chrII 84718 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.91;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2900,309,0 chrII 84736 . C T 3116 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.01;SB=-2.248e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3149,336,0 chrII 84823 . C T 2971 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=18.4585;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.34;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3004,324,0 chrII 84862 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.89;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2564,276,0 chrII 84985 . A T 2195 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.51;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2228,240,0 chrII 85060 . C T 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.396;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.0002;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.420;QD=18.72;ReadPosRankSum=1.497;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1980,194,0 chrII 85339 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.22;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1545,177,0 chrII 85504 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=74;Dels=0.00;FS=9.580;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.041;QD=18.38;ReadPosRankSum=2.247;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1393,153,0 chrII 85528 . T C 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=80;Dels=0.00;FS=6.417;HaplotypeScore=5.8166;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.546;QD=19.71;ReadPosRankSum=2.388;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1610,180,0 chrII 85816 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.50;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1181,135,0 chrII 85903 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.15;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1694,180,0 chrII 86344 . G C 2063 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.10;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2096,246,0 chrII 86416 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.5254;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.849;QD=17.29;ReadPosRankSum=2.215;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2229,236,0 chrII 86455 . T C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=1.337;QD=17.32;ReadPosRankSum=1.671;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2042,225,0 chrII 86465 . T A 1682 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9248;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=14.88;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1715,192,0 chrII 86473 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.9119;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=14.92;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1644,183,0 chrII 86489 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=14.66;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:1866,204,0 chrII 86773 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.81;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1689,189,0 chrII 86817 . C G 1867 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=16.38;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1900,207,0 chrII 87016 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.63;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1972,219,0 chrII 87045 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.36;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1804,192,0 chrII 87046 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.53;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1799,195,0 chrII 87058 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.98;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1608,183,0 chrII 87526 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1648,180,0 chrII 87673 . T A 2540 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.1417;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.71;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2573,270,0 chrII 87720 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.37;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1753,192,0 chrII 87772 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.20;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1426,159,0 chrII 87809 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.24;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1630,180,0 chrII 87995 . T A 976 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.75;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1009,111,0 chrII 88046 . T C 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=5.593;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.075;QD=16.83;ReadPosRankSum=1.673;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1026,114,0 chrII 88087 . T G 916 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=15.79;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:949,105,0 chrII 88152 . G A 633 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=13.47;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:666,75,0 chrII 88391 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=24.18;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1411,153,0 chrII 88485 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=90;Dels=0.00;FS=10.035;HaplotypeScore=2.9747;MLEAC=1;MLEAF=0.500;MQ=44.41;MQ0=0;MQRankSum=0.693;QD=0.17;ReadPosRankSum=-4.158;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:83,7:90:38:45,0,38 chrII 88489 . A T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=89;Dels=0.00;FS=8.702;HaplotypeScore=2.9747;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=1.813;QD=0.13;ReadPosRankSum=-2.173;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:87,2:89:41:41,0,43 chrII 89194 . T A 1034 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.98;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1067,114,0 chrII 89304 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.57;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1229,138,0 chrII 89547 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.42;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1580,171,0 chrII 89612 . C T 1334 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.06;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1367,144,0 chrII 89621 . A C 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.748;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.379;QD=19.70;ReadPosRankSum=1.624;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1294,147,0 chrII 89628 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.52;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1341,150,0 chrII 89733 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4677;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.09;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1741,186,0 chrII 89785 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.726;QD=22.87;ReadPosRankSum=1.695;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2160,240,0 chrII 90193 . C A 2121 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.61;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2154,234,0 chrII 90196 . C A 1962 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.819;QD=17.68;ReadPosRankSum=-0.945;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1995,219,0 chrII 90202 . T G 2082 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.93;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2115,231,0 chrII 90385 . G T 996 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=16.60;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1029,114,0 chrII 90695 . G A 942 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.15;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:975,102,0 chrII 90715 . G C 958 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.55;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:991,111,0 chrII 91802 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.63;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1250,132,0 chrII 92362 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1345,144,0 chrII 92780 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2133,234,0 chrII 93100 . A G 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.419;QD=20.60;ReadPosRankSum=1.704;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2608,285,0 chrII 93388 . A T 1426 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.82;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1459,156,0 chrII 93549 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1969;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.61;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1632,180,0 chrII 93696 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1174,138,0 chrII 93772 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.39;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1338,144,0 chrII 93782 . T C 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.444;QD=20.07;ReadPosRankSum=0.000;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1237,138,0 chrII 93811 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.94;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1245,138,0 chrII 93981 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.04;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1309,150,0 chrII 95093 . T G 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.146;DP=66;Dels=0.00;FS=5.342;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.346;QD=13.70;ReadPosRankSum=1.679;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:937,105,0 chrII 95270 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.72;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1250,138,0 chrII 95343 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.01;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1780,195,0 chrII 95360 . A G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.314;DP=99;Dels=0.00;FS=13.244;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.631;QD=16.42;ReadPosRankSum=3.368;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:4,95:99:99:1659,183,0 chrII 95376 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.45;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1691,180,0 chrII 95610 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.34;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1883,204,0 chrII 96328 . A G 723 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:756,84,0 chrII 96372 . G A 573 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.22;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:66:606,66,0 chrII 96610 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1043,114,0 chrII 96664 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1309,144,0 chrII 96789 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1276,138,0 chrII 97068 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.443;QD=17.62;ReadPosRankSum=1.691;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1513,165,0 chrII 97341 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.648;QD=18.13;ReadPosRankSum=1.690;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1520,168,0 chrII 97530 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.07;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1458,159,0 chrII 97557 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.87;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1448,162,0 chrII 97590 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=17.81;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1440,159,0 chrII 97750 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.92;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1895,201,0 chrII 97884 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.14;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1988,213,0 chrII 98862 . T A 2463 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2496,267,0 chrII 98940 . A T 2132 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2165,237,0 chrII 99188 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.17;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1873,201,0 chrII 99228 . T C 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.588;QD=16.42;ReadPosRankSum=1.696;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1609,180,0 chrII 99464 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.41;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1974,216,0 chrII 99753 . A G 2710 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.40;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2743,318,0 chrII 100153 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.4328;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.859;QD=16.37;ReadPosRankSum=1.672;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1916,216,0 chrII 100367 . A T 2892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.866;QD=21.26;ReadPosRankSum=-0.739;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2925,298,0 chrII 100413 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=3.876;HaplotypeScore=6.7268;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.897;QD=19.76;ReadPosRankSum=1.690;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1713,192,0 chrII 100878 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.41;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1837,198,0 chrII 101103 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.81;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1406,153,0 chrII 101507 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1161,126,0 chrII 101581 . A G 918 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:951,108,0 chrII 102053 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=17.84;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2423,273,0 chrII 102140 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=16.8105;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.39;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,115:120:99:2240,249,0 chrII 102209 . C T 2604 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.07;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2637,285,0 chrII 102386 . A G 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.091;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.706;QD=20.01;ReadPosRankSum=1.700;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2194,243,0 chrII 102419 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.98;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2026,216,0 chrII 102432 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.79;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1837,204,0 chrII 102815 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.67;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1824,195,0 chrII 102947 . T C 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.550;QD=18.72;ReadPosRankSum=1.651;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1643,186,0 chrII 103296 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.71;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1748,186,0 chrII 103586 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=23.75;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1363,144,0 chrII 103652 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1592,171,0 chrII 104383 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.16;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2159,231,0 chrII 104641 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.43;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2681,294,0 chrII 104669 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.44;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2027,222,0 chrII 104735 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1600,180,0 chrII 104953 . C A 1535 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.25;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1568,168,0 chrII 105289 . A G 1478 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.53;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1511,162,0 chrII 105316 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3716;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=16.55;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1208,135,0 chrII 105376 . T C 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.733;QD=16.83;ReadPosRankSum=1.666;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,51:54:99:942,105,0 chrII 105422 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.30;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1059,117,0 chrII 105449 . A G 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.803;QD=17.67;ReadPosRankSum=1.648;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:87:775,87,0 chrII 105583 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.72;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1768,192,0 chrII 105610 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.99;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1592,174,0 chrII 105621 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.81;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1613,171,0 chrII 105670 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8225;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=16.82;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1227,129,0 chrII 105799 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.81;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2607,279,0 chrII 105811 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.07;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2540,270,0 chrII 105868 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.36;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1911,207,0 chrII 105898 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.04;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1636,186,0 chrII 105973 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.01;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1953,213,0 chrII 105979 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=103;Dels=0.00;FS=2.905;HaplotypeScore=6.7450;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.347;QD=18.55;ReadPosRankSum=2.402;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1944,213,0 chrII 106303 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=108;Dels=0.00;FS=8.756;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.080;QD=19.12;ReadPosRankSum=2.403;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:99:2098,234,0 chrII 106348 . T A 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=3.622;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.752;QD=21.55;ReadPosRankSum=1.627;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2188,234,0 chrII 106546 . C T 2261 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.1470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2294,243,0 chrII 106651 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1622,177,0 chrII 107123 . A T 1511 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.25;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1544,162,0 chrII 107326 . T G 1642 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.61;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1675,180,0 chrII 107418 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1904,210,0 chrII 107671 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.56;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1696,186,0 chrII 107779 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.7441;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.52;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1731,186,0 chrII 107825 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5387;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.43;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:108:99:2239,252,0 chrII 107917 . G C 2276 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.22;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2309,258,0 chrII 108114 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.09;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2319,249,0 chrII 108303 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3709;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.60;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2258,240,0 chrII 108375 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.24;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2522,276,0 chrII 108452 . T A 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.278;QD=21.32;ReadPosRankSum=1.689;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1760,183,0 chrII 108510 . T C 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=8.980;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-0.740;QD=17.64;ReadPosRankSum=2.384;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1356,153,0 chrII 108534 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.67;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1469,156,0 chrII 108543 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.42;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1357,147,0 chrII 108557 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.24;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1534,168,0 chrII 108764 . T C 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=7.241;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.558;QD=20.14;ReadPosRankSum=2.382;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1503,168,0 chrII 109050 . T C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.274;QD=22.88;ReadPosRankSum=1.611;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1337,147,0 chrII 109482 . A T 1760 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.00;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1793,192,0 chrII 109500 . A C 1194 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4304;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.58;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1227,135,0 chrII 109506 . T A 1062 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.62;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1095,123,0 chrII 109544 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=15.28;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1164,132,0 chrII 110028 . C G 912 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:945,102,0 chrII 110153 . T G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.434;QD=23.81;ReadPosRankSum=1.673;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1414,156,0 chrII 110335 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9828;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.13;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2161,234,0 chrII 110550 . T C 2285 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.36;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2318,255,0 chrII 110721 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.61;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2441,258,0 chrII 110746 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.80;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1995,219,0 chrII 111115 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.09;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1801,192,0 chrII 111288 . A C 2081 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.4828;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.94;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2114,231,0 chrII 111306 . A C 2195 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=17.15;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2228,255,0 chrII 111699 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=29.7147;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.46;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1447,159,0 chrII 111739 . G A 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=6.4641;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.602;QD=17.47;ReadPosRankSum=1.696;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1693,186,0 chrII 111751 . T G 1629 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.30;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1662,183,0 chrII 111931 . T G 1902 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2504;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.13;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1935,219,0 chrII 111970 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.34;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1427,156,0 chrII 111999 . T C 1252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=71;Dels=0.00;FS=5.342;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.240;QD=17.63;ReadPosRankSum=1.679;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,65:71:99:1285,141,0 chrII 112018 . T G 1108 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.05;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1141,126,0 chrII 112335 . C A 1863 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=24.84;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1896,201,0 chrII 112372 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.69;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1595,174,0 chrII 112378 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=8.970;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.952;QD=21.07;ReadPosRankSum=1.683;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1529,168,0 chrII 112399 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.00;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1230,129,0 chrII 112452 . T C 633 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=14.72;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:666,75,0 chrII 112454 . C T 645 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=14.66;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:678,72,0 chrII 112527 . A G 1109 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.33;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1142,129,0 chrII 112544 . A T 1458 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.94;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1491,159,0 chrII 112618 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.96;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1542,174,0 chrII 112684 . C A 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.530;QD=21.90;ReadPosRankSum=1.414;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2201,217,0 chrII 112736 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.23;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2156,234,0 chrII 113236 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.44;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3143,363,0 chrII 113452 . C T 2730 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2763,300,0 chrII 113639 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.08;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2480,270,0 chrII 113689 . T A 2094 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.13;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2127,234,0 chrII 113697 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.713;QD=21.41;ReadPosRankSum=1.630;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2217,252,0 chrII 114676 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.35;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2253,237,0 chrII 114766 . T C 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.446;QD=22.16;ReadPosRankSum=1.700;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2493,276,0 chrII 115241 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.02;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1274,135,0 chrII 115305 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.87;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1369,156,0 chrII 115635 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.82;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1604,171,0 chrII 116476 . A G 2119 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2152,240,0 chrII 116518 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.35;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1666,174,0 chrII 116848 . G T 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.650;QD=22.45;ReadPosRankSum=0.082;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1986,210,0 chrII 117246 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9211;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.288;QD=20.30;ReadPosRankSum=1.688;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1637,180,0 chrII 117786 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.15;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1852,198,0 chrII 117972 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.52;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1818,198,0 chrII 118370 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=105;Dels=0.00;FS=6.668;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.598;QD=22.15;ReadPosRankSum=2.403;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2359,258,0 chrII 118815 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.87;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2373,255,0 chrII 118905 . T C 1502 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.01;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1535,168,0 chrII 118921 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.97;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1323,141,0 chrII 118944 . T C 752 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.3701;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=12.75;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:90:785,90,0 chrII 118953 . C T 620 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3773;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=10.16;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:72:653,72,0 chrII 119499 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.30;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2672,312,0 chrII 119614 . G C 3157 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.6237;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.33;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3190,348,0 chrII 119958 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.49;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2009,213,0 chrII 119961 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=14.98;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1875,207,0 chrII 120170 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.27;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1184,129,0 chrII 120369 . G C 1499 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.28;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1532,168,0 chrII 120427 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.50;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1591,171,0 chrII 120585 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.89;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1456,168,0 chrII 120867 . G T 1012 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1045,114,0 chrII 121194 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:933,96,0 chrII 121376 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.16;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1434,150,0 chrII 121421 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.12;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1490,156,0 chrII 121541 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.67;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2069,222,0 chrII 121576 . C G 1904 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8686;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.94;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1937,210,0 chrII 121908 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.58;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1824,192,0 chrII 122705 . T G 1218 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.654;QD=24.36;ReadPosRankSum=2.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,47:50:99:1251,132,0 chrII 122996 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.36;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1509,162,0 chrII 123008 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.19;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1393,156,0 chrII 123023 . A C 1394 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.02;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1427,162,0 chrII 123103 . T A 1931 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.79;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1964,210,0 chrII 123320 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.70;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1983,225,0 chrII 123800 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=15.4716;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.14;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1886,204,0 chrII 123940 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.95;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1353,144,0 chrII 123995 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1736,198,0 chrII 124115 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.49;SB=-1.846e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3074,327,0 chrII 124174 . C G 1952 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.95;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,99:103:99:1985,219,0 chrII 124286 . C A 1305 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.08;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1338,144,0 chrII 124456 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.05;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2319,252,0 chrII 124505 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.521;QD=23.88;ReadPosRankSum=1.690;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1991,225,0 chrII 124574 . T C 1067 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=16.67;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1100,126,0 chrII 124595 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.04;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:851,90,0 chrII 124617 . A G 788 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=15.15;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:821,90,0 chrII 124916 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9439;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.88;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1484,156,0 chrII 124942 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.83;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1389,153,0 chrII 124959 . A C 1361 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6052;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.64;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1394,150,0 chrII 125022 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.02;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1905,207,0 chrII 125552 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1556,171,0 chrII 125786 . G T 1746 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.97;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1779,192,0 chrII 125843 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.23;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1105,117,0 chrII 126080 . T C 2053 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.84;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2086,228,0 chrII 126130 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.90;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1394,147,0 chrII 126263 . T C 863 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=16.28;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:896,99,0 chrII 126272 . T C 726 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=15.45;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:84:759,84,0 chrII 126675 . C G 1881 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4273;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.90;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1914,210,0 chrII 127025 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.85;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,177,0 chrII 127605 . T G 515 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=21.46;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:548,60,0 chrII 128153 . A C 2038 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.15;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2071,231,0 chrII 128257 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.33;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1908,210,0 chrII 128435 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.247;QD=16.45;ReadPosRankSum=1.656;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1546,174,0 chrII 128479 . T G 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.196;QD=15.59;ReadPosRankSum=1.691;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1358,147,0 chrII 128480 . T A 1332 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=15.86;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1365,147,0 chrII 128515 . G T 1602 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.63;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1635,180,0 chrII 128547 . A G 1816 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.74;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1849,201,0 chrII 128669 . A G 1945 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.26;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1978,228,0 chrII 129791 . T A 2068 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.68;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2101,234,0 chrII 130407 . A G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.099;QD=18.98;ReadPosRankSum=2.338;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:2,42:45:99:887,99,0 chrII 130988 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.65;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1685,186,0 chrII 131051 . G A 2574 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.10;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2607,294,0 chrII 131705 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1584,168,0 chrII 131840 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.61;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1224,135,0 chrII 132489 . T C 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.683;QD=23.24;ReadPosRankSum=1.633;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1683,189,0 chrII 132576 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.72;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1220,129,0 chrII 132663 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.26;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2287,255,0 chrII 132945 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.88;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2970,327,0 chrII 132975 . T A 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=129;Dels=0.00;FS=2.523;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.836;QD=18.28;ReadPosRankSum=2.946;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:3,126:129:99:2391,270,0 chrII 133163 . G C 3068 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=14.0310;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.23;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3101,342,0 chrII 133440 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=110;Dels=0.00;FS=7.822;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=1.980;QD=21.48;ReadPosRankSum=2.405;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2396,276,0 chrII 133595 . A G 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.226;QD=14.70;ReadPosRankSum=0.573;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1077,117,0 chrII 133612 . A G 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.294;QD=16.35;ReadPosRankSum=2.372;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1063,117,0 chrII 133779 . C T 1713 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1746,183,0 chrII 133938 . A C 743 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=62.97;MQ0=0;QD=23.22;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,30:32:87:776,87,0 chrII 134090 . A G 1347 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=17.243;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.294;QD=25.42;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1380,153,0 chrII 134485 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.23;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2398,252,0 chrII 134692 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.44;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1508,168,0 chrII 135630 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.39;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1868,204,0 chrII 135667 . A C 1374 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.82;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1407,153,0 chrII 136632 . T G 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=48;Dels=0.00;FS=4.646;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.903;QD=24.19;ReadPosRankSum=2.348;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1194,110,0 chrII 136840 . A T 1138 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.07;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1171,126,0 chrII 137232 . A G 2428 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.35;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2461,267,0 chrII 137272 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=15.78;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1374,150,0 chrII 137745 . A G 879 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:912,108,0 chrII 137859 . T G 1094 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.33;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1127,123,0 chrII 137868 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.87;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1118,123,0 chrII 137882 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.57;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1031,117,0 chrII 137948 . A G 549 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.33;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:582,63,0 chrII 138068 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.59;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1185,126,0 chrII 138095 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.30;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1162,120,0 chrII 138102 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.46;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1192,132,0 chrII 138346 . T C 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.275;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.5708;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=1.536;QD=17.36;ReadPosRankSum=1.667;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:953,108,0 chrII 138529 . G T 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=88;Dels=0.00;FS=3.832;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.692;QD=23.09;ReadPosRankSum=-0.737;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2065,222,0 chrII 138686 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.37;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1907,201,0 chrII 138689 . C A 1808 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=17.06;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1841,198,0 chrII 138698 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.78;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1758,186,0 chrII 139079 . T G 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.394;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.436;QD=19.36;ReadPosRankSum=0.845;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,81:85:99:1679,170,0 chrII 139115 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.62;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1930,213,0 chrII 140021 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.29;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2240,237,0 chrII 140063 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.15;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1927,204,0 chrII 140131 . T C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.099;QD=19.96;ReadPosRankSum=1.584;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1430,156,0 chrII 140633 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.61;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1347,144,0 chrII 140643 . C A 1310 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.45;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1343,141,0 chrII 141015 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.15;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2327,249,0 chrII 141175 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.92;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2203,237,0 chrII 141191 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.03;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2156,240,0 chrII 141227 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.63;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:86:99:1635,180,0 chrII 141553 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.12;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2114,228,0 chrII 142208 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.11;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1938,204,0 chrII 142364 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.88;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2069,228,0 chrII 142508 . A T 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.476;QD=21.41;ReadPosRankSum=1.700;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2345,258,0 chrII 142625 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.1448;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.39;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2092,231,0 chrII 142804 . C G 1939 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.63;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1972,219,0 chrII 142825 . G T 1915 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.9914;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.74;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1948,216,0 chrII 143298 . A G 656 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.74;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:689,78,0 chrII 143387 . C A 1013 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=24.71;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1046,111,0 chrII 143491 . T C 896 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.84;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:929,102,0 chrII 143613 . A G 778 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.95;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:811,90,0 chrII 143627 . C T 781 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.11;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:814,87,0 chrII 143722 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=16.48;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:51:478,51,0 chrII 143723 . A T 444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;MQRankSum=-1.605;QD=16.44;ReadPosRankSum=1.605;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:51:477,51,0 chrII 143749 . T C 552 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=15.33;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:63:585,63,0 chrII 143756 . A T 560 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=15.14;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:63:593,63,0 chrII 143764 . C T 513 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=14.66;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:60:546,60,0 chrII 143771 . C T 538 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=16.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:60:571,60,0 chrII 143789 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=18.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:75:708,75,0 chrII 144448 . T A 2250 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.28;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2283,246,0 chrII 144820 . T G 1957 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5318;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.00;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1990,225,0 chrII 144853 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2915;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.08;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2055,231,0 chrII 144937 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.43;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1850,204,0 chrII 144991 . A G 2242 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.85;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2275,249,0 chrII 145735 . T C 869 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:96:902,96,0 chrII 145980 . G C 536 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.33;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:63:569,63,0 chrII 146099 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.41;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:825,87,0 chrII 146107 . C A 801 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=18.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:44:87:834,87,0 chrII 146114 . C T 867 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:96:900,96,0 chrII 146217 . T G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.395;QD=25.44;ReadPosRankSum=1.550;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1483,162,0 chrII 146288 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=2.008;QD=23.00;ReadPosRankSum=2.303;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1574,171,0 chrII 146312 . C G 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.56;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,147,0 chrII 146333 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.40;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1352,141,0 chrII 146444 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.03;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1421,153,0 chrII 146609 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.95;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1789,192,0 chrII 146672 . G T 1547 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=23.44;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1580,168,0 chrII 146699 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.00;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1507,159,0 chrII 146950 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.48;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1982,210,0 chrII 147143 . T C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.636;QD=21.24;ReadPosRankSum=0.818;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1562,154,0 chrII 147197 . A T 1698 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.7082;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.52;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1731,180,0 chrII 147484 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.3761;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.59;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2319,249,0 chrII 148429 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.73;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2510,279,0 chrII 148555 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6681;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.66;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2432,270,0 chrII 148600 . T A 2168 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.12;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2201,234,0 chrII 148726 . G T 1840 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.44;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1873,201,0 chrII 148936 . G A 977 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.71;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1010,105,0 chrII 148999 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.79;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1484,162,0 chrII 149026 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.12;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1906,207,0 chrII 149059 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.93;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1642,180,0 chrII 149137 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2117,231,0 chrII 149353 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2401,261,0 chrII 149779 . T A 2164 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.02;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2197,234,0 chrII 150296 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=5.6281;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.398;QD=18.98;ReadPosRankSum=1.690;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1627,180,0 chrII 150351 . T C 297.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=97;Dels=0.00;FS=59.314;HaplotypeScore=10.4992;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=-1.034;QD=3.06;ReadPosRankSum=-4.783;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:63,33:97:99:327,0,1091 chrII 150809 . A G 1479 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.43;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1512,165,0 chrII 151197 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.75;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1376,159,0 chrII 151397 . T C 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.009;QD=18.04;ReadPosRankSum=2.322;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1422,159,0 chrII 151407 . G T 1558 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.23;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1591,171,0 chrII 151921 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.661;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.118;QD=20.22;ReadPosRankSum=1.688;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1630,180,0 chrII 151963 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=95;Dels=0.00;FS=8.225;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.870;QD=20.74;ReadPosRankSum=2.289;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,90:95:99:2003,228,0 chrII 151976 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.08;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2131,234,0 chrII 152021 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.6537;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.66;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2199,234,0 chrII 152612 . A G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.979;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.291;QD=20.61;ReadPosRankSum=1.669;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1187,129,0 chrII 152624 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.16;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1162,126,0 chrII 152750 . A C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.222;QD=16.65;ReadPosRankSum=1.688;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1332,150,0 chrII 152894 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1382,150,0 chrII 153007 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.22;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:892,96,0 chrII 153155 . A G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.803;QD=18.93;ReadPosRankSum=1.462;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1169,129,0 chrII 154740 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.874;QD=20.29;ReadPosRankSum=2.393;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1778,192,0 chrII 154799 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1475,162,0 chrII 155210 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1947,219,0 chrII 155354 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1800,201,0 chrII 155632 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.31;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1546,162,0 chrII 155739 . T G 1134 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1167,126,0 chrII 155783 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1133,126,0 chrII 155828 . T C 850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.832;QD=16.67;ReadPosRankSum=1.663;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:96:883,96,0 chrII 156203 . C A 1911 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0315;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.22;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1944,207,0 chrII 156266 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.509;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.939;QD=19.28;ReadPosRankSum=1.690;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1633,189,0 chrII 156533 . A G 1717 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.08;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1750,195,0 chrII 156572 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1543,162,0 chrII 157270 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1528,168,0 chrII 157331 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;DP=94;Dels=0.00;FS=9.207;HaplotypeScore=6.1894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.796;QD=18.64;ReadPosRankSum=3.362;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:4,90:94:99:1785,198,0 chrII 157763 . A T 2530 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.26;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2563,279,0 chrII 158114 . A G 2970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=135;Dels=0.00;FS=8.664;HaplotypeScore=7.9527;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.574;QD=22.00;ReadPosRankSum=2.412;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,131:135:99:3003,336,0 chrII 158591 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2571,276,0 chrII 158800 . G T 1940 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.87;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1973,213,0 chrII 158803 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=117;Dels=0.00;FS=13.648;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.500;QD=16.83;ReadPosRankSum=2.851;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2002,219,0 chrII 159139 . T G 2129 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.47;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2162,243,0 chrII 159397 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.99;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1562,171,0 chrII 159427 . A G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.875;QD=18.64;ReadPosRankSum=1.625;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1841,204,0 chrII 159670 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.4488;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=13.37;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:982,105,0 chrII 159902 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=23.78;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1531,165,0 chrII 159926 . C A 1094 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.54;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1127,126,0 chrII 159927 . T C 1129 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.47;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1162,132,0 chrII 160143 . T G 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=64;Dels=0.00;FS=3.053;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.529;QD=19.94;ReadPosRankSum=2.293;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1309,144,0 chrII 160403 . G T 2814 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.05;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2847,309,0 chrII 160618 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.90;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2354,252,0 chrII 160810 . T G 1743 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.26;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1776,195,0 chrII 161484 . T G 3578.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;DP=152;Dels=0.00;FS=3.273;HaplotypeScore=6.3454;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.912;QD=23.54;ReadPosRankSum=2.026;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:2,149:152:99:3578,396,0 chrII 161687 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=82;Dels=0.00;FS=7.723;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.097;QD=20.93;ReadPosRankSum=2.330;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1749,195,0 chrII 162251 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=88;Dels=0.00;FS=2.895;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.071;QD=19.20;ReadPosRankSum=2.393;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1723,198,0 chrII 162420 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.3843;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1853,207,0 chrII 162773 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.86;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1259,147,0 chrII 163854 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=96;Dels=0.00;FS=3.840;HaplotypeScore=13.3416;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.188;QD=18.81;ReadPosRankSum=1.694;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,91:96:99:1839,201,0 chrII 163967 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4507;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.43;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1586,177,0 chrII 163989 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5962;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.95;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1559,174,0 chrII 164419 . T C 1689 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1278;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.11;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1722,198,0 chrII 164474 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2046,225,0 chrII 164792 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1426,153,0 chrII 164995 . T G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=3.041;HaplotypeScore=4.2594;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.018;QD=16.65;ReadPosRankSum=0.345;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1165,129,0 chrII 165049 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.43;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1851,201,0 chrII 165525 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=17.88;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1785,198,0 chrII 165586 . T A 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=61;Dels=0.00;FS=4.429;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.448;QD=19.49;ReadPosRankSum=1.562;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1222,132,0 chrII 165680 . A C 621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3338;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.500;QD=13.80;ReadPosRankSum=-1.116;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:53:654,53,0 chrII 165729 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.71;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1002,114,0 chrII 165877 . T C 624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=38;Dels=0.00;FS=12.907;HaplotypeScore=13.5367;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.033;QD=16.42;ReadPosRankSum=2.255;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:72:657,72,0 chrII 165927 . C T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DP=39;Dels=0.00;FS=19.742;HaplotypeScore=3.4724;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-0.049;QD=2.00;ReadPosRankSum=-2.871;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,13:39:99:108,0,202 chrII 165929 . C T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=40;Dels=0.00;FS=11.979;HaplotypeScore=4.2063;MLEAC=1;MLEAF=0.500;MQ=56.39;MQ0=0;MQRankSum=0.420;QD=0.31;ReadPosRankSum=-2.302;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,7:40:42:42,0,214 chrII 166019 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.575;QD=23.73;ReadPosRankSum=1.417;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1077,120,0 chrII 166311 . C T 975 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1008,108,0 chrII 166396 . A T 163.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.31;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:196,21,0 chrII 166460 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1173,129,0 chrII 166572 . C T 1128 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1161,126,0 chrII 166607 . T C 1051 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1084,117,0 chrII 167174 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.99;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1400,159,0 chrII 167373 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.62;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1105,117,0 chrII 167397 . A G 789 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.93;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:822,90,0 chrII 167426 . G A 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-0.460;QD=17.24;ReadPosRankSum=1.662;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:96:895,96,0 chrII 167527 . G A 731 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.76;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:764,84,0 chrII 167680 . T C 606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=4.472;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.238;QD=14.43;ReadPosRankSum=1.650;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:69:639,69,0 chrII 167779 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.79;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1104,120,0 chrII 167975 . A C 712 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=13.8737;MLEAC=2;MLEAF=1.00;MQ=60.64;MQ0=0;QD=22.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:84:745,84,0 chrII 167998 . G A 241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=0.133;QD=7.53;ReadPosRankSum=-0.933;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,30:32:30:274,30,0 chrII 168065 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.20;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1720,186,0 chrII 168129 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.81;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1800,192,0 chrII 168150 . C G 1579 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.51;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1612,183,0 chrII 168194 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.88;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1206,129,0 chrII 168254 . C A 1169 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.38;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1202,129,0 chrII 168279 . C A 1192 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.55;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1225,129,0 chrII 168448 . T C 2258 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.16;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2291,252,0 chrII 168454 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.10;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2184,240,0 chrII 168467 . T G 1843 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5106;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=18.43;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1876,210,0 chrII 168633 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=6.707;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.727;QD=17.66;ReadPosRankSum=2.382;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1322,147,0 chrII 168653 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.13;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1232,132,0 chrII 168659 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=14.25;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1116,123,0 chrII 168711 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=16.13;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1598,171,0 chrII 168731 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.130;QD=15.82;ReadPosRankSum=1.695;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1504,168,0 chrII 168747 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.02;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1783,195,0 chrII 168775 . A T 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=93;Dels=0.00;FS=12.595;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.489;QD=18.17;ReadPosRankSum=2.729;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1723,186,0 chrII 168802 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.71;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1866,204,0 chrII 169483 . A G 2740 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.57;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2773,300,0 chrII 169496 . G C 2447 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.09;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2480,282,0 chrII 169621 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=24.42;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1547,168,0 chrII 169820 . G T 1765 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.1412;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.78;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1798,189,0 chrII 169980 . T G 77.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.523;DP=37;Dels=0.00;FS=1.838;HaplotypeScore=112.4636;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;MQRankSum=0.830;QD=2.09;ReadPosRankSum=-0.498;SB=-3.051e+01 GT:AD:DP:GQ:PL 1/1:29,8:37:12:110,12,0 chrII 170167 . C G 1055 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.02;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1088,120,0 chrII 170206 . G T 950 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:983,102,0 chrII 170259 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.64;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:984,105,0 chrII 170308 . A G 771 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.84;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,34:37:90:804,90,0 chrII 170311 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.57;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:753,84,0 chrII 170372 . C G 517 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.88;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:550,60,0 chrII 170413 . G A 712 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.58;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:745,78,0 chrII 171433 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.41;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2174,252,0 chrII 171570 . A G 2799 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.92;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2832,309,0 chrII 171612 . G C 2259 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.55;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2292,252,0 chrII 171678 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.02;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2660,282,0 chrII 171948 . G C 3377.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.82;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3377,381,0 chrII 172113 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.74;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1829,198,0 chrII 172171 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.79;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1253,135,0 chrII 172178 . C A 1159 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.70;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1192,129,0 chrII 172223 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=0.444;QD=18.73;ReadPosRankSum=1.599;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1494,162,0 chrII 172245 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.79;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1670,186,0 chrII 172262 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-0.338;QD=18.32;ReadPosRankSum=1.692;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1627,177,0 chrII 172301 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=14.19;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1182,132,0 chrII 172338 . T G 559 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=9.81;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:66:592,66,0 chrII 172351 . C T 531 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=9.48;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:60:564,60,0 chrII 172488 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.15;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1031,111,0 chrII 172494 . C G 1056 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.86;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1089,120,0 chrII 172657 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.868;DP=51;Dels=0.00;FS=3.082;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=1.480;QD=20.08;ReadPosRankSum=2.354;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1057,117,0 chrII 172962 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.5802;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.59;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1968,216,0 chrII 173196 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.71;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1308,147,0 chrII 173659 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1393,153,0 chrII 175109 . T A 2288 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.83;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2321,255,0 chrII 175316 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.16;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2372,246,0 chrII 175409 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3787;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=17.14;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1644,180,0 chrII 175439 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=15.03;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1431,159,0 chrII 175505 . C A 2822 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.4202;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.45;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2855,303,0 chrII 175526 . A G 2990 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.06;SB=-1.775e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3023,336,0 chrII 175964 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.366;HaplotypeScore=4.9660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.499;QD=19.11;ReadPosRankSum=1.654;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1753,189,0 chrII 176084 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.99;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2272,252,0 chrII 176684 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.26;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1691,183,0 chrII 177622 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.95;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2330,252,0 chrII 177793 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=16.3520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1891,201,0 chrII 178531 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1698,192,0 chrII 178570 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1605,171,0 chrII 179083 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=4.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.666;QD=22.27;ReadPosRankSum=1.679;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1503,165,0 chrII 179218 . T C 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.284;QD=20.19;ReadPosRankSum=1.681;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1406,153,0 chrII 179248 . A G 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.153;QD=19.61;ReadPosRankSum=1.681;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1406,159,0 chrII 179257 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.56;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1461,156,0 chrII 179290 . C G 1221 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.08;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1254,141,0 chrII 179854 . T G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=71;Dels=0.00;FS=3.266;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.297;QD=18.70;ReadPosRankSum=1.633;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1361,156,0 chrII 179872 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.74;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1178,129,0 chrII 180070 . T G 1598 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.59;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1631,180,0 chrII 180100 . T C 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.191;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.567;QD=19.98;ReadPosRankSum=1.691;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1711,192,0 chrII 180255 . G T 1499 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.71;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1532,165,0 chrII 180379 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.57;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1047,117,0 chrII 181279 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.45;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2192,234,0 chrII 181302 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.79;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2032,219,0 chrII 181425 . A T 2217 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2250,246,0 chrII 182128 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=109;Dels=0.00;FS=12.186;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.897;QD=16.08;ReadPosRankSum=2.935;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1786,195,0 chrII 182137 . G T 1922 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.96;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1955,207,0 chrII 182360 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1048;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.92;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1853,204,0 chrII 182436 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.14;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1428,162,0 chrII 183084 . A C 1567 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.39;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1600,177,0 chrII 183393 . A C 1270 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.48;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1303,141,0 chrII 183726 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.65;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1505,162,0 chrII 183810 . C T 2791 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.26;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2824,300,0 chrII 183889 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.84;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1933,207,0 chrII 184020 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.26;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1146,123,0 chrII 184176 . A G 2038 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.8878;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.80;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2071,237,0 chrII 184236 . G C 1576 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.51;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1609,177,0 chrII 184343 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.247;QD=21.77;ReadPosRankSum=1.622;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1426,156,0 chrII 184747 . T G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.292;QD=22.58;ReadPosRankSum=2.391;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1907,207,0 chrII 184932 . A C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=86;Dels=0.00;FS=2.988;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.304;QD=20.15;ReadPosRankSum=2.392;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1766,192,0 chrII 184941 . T A 1678 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.98;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1711,183,0 chrII 185421 . G C 849 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.74;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:882,96,0 chrII 185443 . T C 866 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.12;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:899,99,0 chrII 185478 . C G 921 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.71;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:954,105,0 chrII 185754 . G A 657 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.32;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:72:690,72,0 chrII 185762 . T C 601 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.24;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:72:634,72,0 chrII 185922 . A G 842 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.04;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:96:875,96,0 chrII 186403 . C T 3228.29 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.3605;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.10;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3262,348,0 chrII 186753 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.82;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1990,213,0 chrII 187153 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.52;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1154,123,0 chrII 187552 . T A 744 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.71;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:777,84,0 chrII 187744 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.04;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1277,141,0 chrII 187873 . T C 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.167;QD=21.54;ReadPosRankSum=1.662;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1110,126,0 chrII 188077 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.25;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1335,141,0 chrII 188191 . A T 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.337;QD=22.24;ReadPosRankSum=1.684;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1634,171,0 chrII 188500 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.97;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1439,165,0 chrII 188904 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.41;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2122,222,0 chrII 188905 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.57;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2089,222,0 chrII 189209 . T A 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=6.690;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.454;QD=20.17;ReadPosRankSum=1.701;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2292,243,0 chrII 190246 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1920,204,0 chrII 190452 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.6438;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.62;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1799,198,0 chrII 190583 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.49;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1877,198,0 chrII 190620 . C G 2140 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.19;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2173,243,0 chrII 190670 . T C 2445 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.43;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2478,270,0 chrII 190881 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1692,177,0 chrII 191207 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2190,240,0 chrII 191242 . C A 1687 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1720,183,0 chrII 191470 . A T 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=101;Dels=0.00;FS=2.538;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.950;QD=18.49;ReadPosRankSum=2.526;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1900,201,0 chrII 191528 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8288;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.61;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2389,252,0 chrII 191563 . G T 1546 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.77;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1579,174,0 chrII 192289 . G C 1027 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.96;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1060,120,0 chrII 192576 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.79;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1309,147,0 chrII 192582 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=14.22;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1213,132,0 chrII 192819 . A G 2937 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2902;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.59;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2970,324,0 chrII 193513 . C T 4062.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.16;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,211:212:99:4062,430,0 chrII 193539 . C T 4545.01 PASS AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=240.3145;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=17.55;SB=-2.453e+03 GT:AD:DP:GQ:PL 1/1:0,258:259:99:4545,498,0 chrII 193664 . T C 2282 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.75;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2315,261,0 chrII 194226 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1366,147,0 chrII 195698 . A G 2833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.470;QD=21.46;ReadPosRankSum=1.680;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2866,312,0 chrII 195718 . C G 2752 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.54;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2785,303,0 chrII 195938 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.473;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.421;QD=24.98;ReadPosRankSum=1.693;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2256,240,0 chrII 195960 . A T 1756 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.51;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1789,195,0 chrII 196145 . C A 1806 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.30;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1839,192,0 chrII 196417 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.49;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1301,141,0 chrII 196454 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.60;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1125,126,0 chrII 196455 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.99;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1152,126,0 chrII 196478 . T A 802 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=10.69;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:90:835,90,0 chrII 196492 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1623;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=12.83;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1085,114,0 chrII 196581 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.62;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1600,177,0 chrII 196681 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6146;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.21;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2430,267,0 chrII 196732 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.12;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1916,207,0 chrII 196745 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.74;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1736,189,0 chrII 197246 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.56;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1534,162,0 chrII 197464 . T C 337 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=16.85;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:370,42,0 chrII 197474 . G C 480 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.87;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:513,57,0 chrII 197588 . C T 360 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=14.40;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:42:393,42,0 chrII 197761 . G A 108.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=1;QD=8.33;SB=-1.122e+02 GT:AD:DP:GQ:PL 1/1:1,12:13:15:141,15,0 chrII 197814 . G A 50.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=1;QD=7.28;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:9:83,9,0 chrII 197868 . A G 152.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=2;QD=16.90;SB=-5.381e+01 GT:AD:DP:GQ:PL 1/1:2,7:9:21:185,21,0 chrII 198029 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=23.11;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:90:842,90,0 chrII 198826 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1262,144,0 chrII 199391 . A C 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.236;QD=15.97;ReadPosRankSum=1.693;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1438,159,0 chrII 199514 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.51;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1038,111,0 chrII 199762 . A C 1586 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.82;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1619,180,0 chrII 200483 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.92;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1660,186,0 chrII 200522 . A G 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.999;QD=20.16;ReadPosRankSum=1.651;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1747,201,0 chrII 200530 . G T 1840 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.44;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1873,204,0 chrII 201237 . G A 2801 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.79;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2834,297,0 chrII 201350 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=5.7879;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.885;QD=22.02;ReadPosRankSum=1.695;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2103,240,0 chrII 201611 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=3.285;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.035;QD=18.35;ReadPosRankSum=1.520;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1868,207,0 chrII 201831 . G A 2496 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.09;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2529,273,0 chrII 202108 . A T 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=4.003;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.466;QD=23.22;ReadPosRankSum=1.695;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2192,231,0 chrII 202227 . T A 1958 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.61;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1991,213,0 chrII 202238 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.63;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1663,189,0 chrII 202296 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.78;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1627,183,0 chrII 202580 . C G 1674 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.2697;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=16.57;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1707,186,0 chrII 202724 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.93;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1593,180,0 chrII 202943 . A G 1119 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.76;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1152,126,0 chrII 203566 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1035,117,0 chrII 203910 . C G 796 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=13.05;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:829,99,0 chrII 204515 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6910;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.35;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2271,240,0 chrII 204536 . A G 2091 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.54;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2124,237,0 chrII 204923 . A T 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.521;DP=74;Dels=0.00;FS=2.455;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.137;QD=18.22;ReadPosRankSum=1.507;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1381,126,0 chrII 204924 . T C 1311 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.21;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1344,147,0 chrII 204995 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.66;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1429,150,0 chrII 205079 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.16;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1432,159,0 chrII 205151 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.69;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1825,192,0 chrII 205157 . C A 1698 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.46;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1731,186,0 chrII 205382 . T C 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.132;QD=21.23;ReadPosRankSum=1.640;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1668,183,0 chrII 205855 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.76;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1773,195,0 chrII 205891 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.84;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1561,180,0 chrII 206076 . C G 1964 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.38;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1997,222,0 chrII 207220 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=5.1499;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.445;QD=23.59;ReadPosRankSum=1.386;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1684,183,0 chrII 207568 . G C 2182 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.46;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2215,243,0 chrII 208858 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.93;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2163,228,0 chrII 209191 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.65;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1901,204,0 chrII 209245 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.90;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2018,222,0 chrII 210387 . A G 2250 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2283,249,0 chrII 210582 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.70;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1325,147,0 chrII 210974 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.43;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1762,192,0 chrII 212810 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.30;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1839,201,0 chrII 212882 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.779;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.584;QD=17.17;ReadPosRankSum=2.388;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2093,228,0 chrII 212886 . C G 2027 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.63;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2060,228,0 chrII 213058 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1742,189,0 chrII 213466 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.93;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1963,216,0 chrII 213728 . T G 1531 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.64;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1564,171,0 chrII 214810 . C T 1253 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1286,135,0 chrII 215467 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.73;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2510,267,0 chrII 215593 . A G 2093 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.38;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2126,240,0 chrII 215962 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=15.95;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1500,165,0 chrII 216541 . A C 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=120;Dels=0.00;FS=3.016;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.886;QD=19.04;ReadPosRankSum=2.345;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2318,264,0 chrII 216631 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.1985;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.13;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2710,297,0 chrII 216794 . T C 2915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=5.262;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.621;QD=22.25;ReadPosRankSum=0.357;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2948,333,0 chrII 217015 . G C 2985 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.73;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3018,330,0 chrII 217070 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.30;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2265,237,0 chrII 217082 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.13;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1986,225,0 chrII 217109 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=12.160;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.659;QD=13.28;ReadPosRankSum=2.362;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1520,165,0 chrII 217206 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.6539;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.59;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2078,216,0 chrII 217666 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.47;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1920,207,0 chrII 217676 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.70;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1980,210,0 chrII 218039 . A G 1197 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.58;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1230,132,0 chrII 218663 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.61;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1391,147,0 chrII 218666 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6538;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=17.27;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1570,168,0 chrII 219197 . T C 1111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=51;Dels=0.00;FS=10.704;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.821;QD=21.78;ReadPosRankSum=2.862;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:99:1144,126,0 chrII 219381 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.89;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1558,165,0 chrII 219635 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.23;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1478,162,0 chrII 220055 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.82;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1892,201,0 chrII 220122 . G A 1322 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.44;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1355,150,0 chrII 220136 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.86;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,153,0 chrII 220331 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.45;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2031,222,0 chrII 220451 . T G 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.72;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2001,228,0 chrII 220704 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.90;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2245,243,0 chrII 220983 . G T 577 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=12.02;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:72:610,72,0 chrII 221053 . C A 819 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=17.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:90:852,90,0 chrII 221060 . G A 701 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=1;QD=16.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:78:734,78,0 chrII 221065 . T C 707 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=1;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:78:740,78,0 chrII 221066 . C T 644 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=2;QD=16.95;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:75:677,75,0 chrII 221072 . A G 581 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=3;QD=15.70;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:4,33:37:69:614,69,0 chrII 221075 . G T 420 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=7;QD=10.77;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:2,31:39:48:453,48,0 chrII 221079 . T C 216 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DP=28;Dels=0.00;FS=40.655;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=9;MQRankSum=3.194;QD=7.71;ReadPosRankSum=3.194;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:14,14:28:30:249,30,0 chrII 221080 . A G 232 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=29;Dels=0.00;FS=34.857;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=21.16;MQ0=9;MQRankSum=2.920;QD=8.00;ReadPosRankSum=2.920;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:14,14:29:30:265,30,0 chrII 221084 . T C 249 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=34;Dels=0.00;FS=59.123;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=11;MQRankSum=3.937;QD=7.32;ReadPosRankSum=3.370;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:20,14:34:30:282,30,0 chrII 221085 . C T 242 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;DP=37;Dels=0.00;FS=51.164;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=13;MQRankSum=3.637;QD=6.54;ReadPosRankSum=2.504;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:20,17:37:30:275,30,0 chrII 221087 . A G 233 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.732;DP=44;Dels=0.00;FS=62.925;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=17;MQRankSum=4.070;QD=5.30;ReadPosRankSum=2.020;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:27,14:44:30:266,30,0 chrII 221234 . T A 95.26 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=14;QD=2.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,36:40:15:128,15,0 chrII 221235 . G A 97.26 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=14;QD=2.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,37:40:15:130,15,0 chrII 221757 . C T 62.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=55;Dels=0.00;FS=14.914;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=11.32;MQ0=24;MQRankSum=0.503;QD=1.14;ReadPosRankSum=1.286;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,54:55:12:95,12,0 chrII 221774 . G A 139.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=70;Dels=0.00;FS=24.579;HaplotypeScore=6.1026;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=28;MQRankSum=-1.093;QD=1.99;ReadPosRankSum=0.561;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:2,68:70:21:172,21,0 chrII 221941 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.536;DP=77;Dels=0.00;FS=7.968;HaplotypeScore=10.1847;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=57;MQRankSum=0.872;QD=0.21;ReadPosRankSum=-0.555;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:43,33:77:6:47,6,0 chrII 222546 . T C 82.26 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=10.28;MQ0=28;QD=1.42;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:15:115,15,0 chrII 222557 . C T 82.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=9.67;MQ0=32;MQRankSum=3.815;QD=1.39;ReadPosRankSum=3.815;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:7,51:59:15:115,15,0 chrII 222623 . G A 308.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;DP=104;Dels=0.00;FS=9.558;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=13.63;MQ0=57;MQRankSum=1.777;QD=2.96;ReadPosRankSum=-0.692;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:53,51:104:99:338,0,403 chrII 225536 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=7.52;MQ0=65;QD=0.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:9:80,9,0 chrII 226876 . T C 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=13;MQRankSum=0.000;QD=3.15;ReadPosRankSum=1.393;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:14,9:23:12:105,12,0 chrII 226882 . G A 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=12;QD=6.87;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:11,12:23:21:191,21,0 chrII 226883 . T C 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=11;QD=6.96;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:11,11:22:21:186,21,0 chrII 226898 . A T 168.06 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=9;QD=5.09;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:9,24:33:21:201,21,0 chrII 226907 . C T 248 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=7;QD=7.52;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:5,28:33:30:281,30,0 chrII 226910 . C A 278 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=7;QD=8.42;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:7,26:33:33:311,33,0 chrII 226936 . C A 360 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=2;QD=9.00;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,38:40:42:393,42,0 chrII 226941 . C A 355 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.10;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:42:388,42,0 chrII 226948 . T C 293 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.087;QD=7.32;ReadPosRankSum=1.126;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:39:326,39,0 chrII 226949 . C T 285 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.126;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.087;QD=7.12;ReadPosRankSum=1.126;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:39:318,39,0 chrII 227168 . A G 571 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.15;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:66:604,66,0 chrII 228106 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.71;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1618,180,0 chrII 228112 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.71;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1452,159,0 chrII 228251 . T C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=2.871;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.705;QD=22.87;ReadPosRankSum=2.364;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2000,219,0 chrII 230037 . A T 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0726;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.476;QD=21.26;ReadPosRankSum=1.689;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1776,189,0 chrII 231527 . T C 1368 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1401,156,0 chrII 231704 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.51;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1735,192,0 chrII 231837 . A G 2393 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.75;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2426,267,0 chrII 232531 . C T 2284 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2317,246,0 chrII 232618 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1573,171,0 chrII 232715 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.75;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1514,165,0 chrII 234165 . C A 1998 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2031,213,0 chrII 234196 . T G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.931;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.402;QD=20.22;ReadPosRankSum=2.388;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1651,180,0 chrII 235113 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.87;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1542,162,0 chrII 235857 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=15.21;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:87:99:1356,147,0 chrII 235877 . A C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=3.219;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.072;QD=18.98;ReadPosRankSum=1.727;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2121,243,0 chrII 235927 . A T 2375 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.47;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2408,258,0 chrII 235931 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.28;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2279,255,0 chrII 236256 . T A 1647 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1680,177,0 chrII 237656 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.36;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1275,138,0 chrII 237660 . T C 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=5.740;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.404;QD=19.77;ReadPosRankSum=1.675;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1239,135,0 chrII 237729 . A G 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.465;QD=16.78;ReadPosRankSum=1.479;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:721,81,0 chrII 237821 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.81;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1470,156,0 chrII 237832 . T G 1431 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.36;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1464,168,0 chrII 237911 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.89;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1084,117,0 chrII 237971 . A T 324 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.25;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:39:357,39,0 chrII 238080 . G C 607 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.85;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:75:640,75,0 chrII 238097 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.38;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:889,102,0 chrII 238137 . T C 976 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1009,111,0 chrII 238224 . T A 323 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.00;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:39:356,39,0 chrII 238239 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=9.99;SB=-5.221e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:82,9,0 chrII 238276 . T G 344 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.23;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:42:377,42,0 chrII 238287 . A C 493 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=13.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:60:526,60,0 chrII 238346 . T G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1718;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.376;QD=17.72;ReadPosRankSum=3.572;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:5,63:68:99:1238,135,0 chrII 238452 . A G 1588 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1621,180,0 chrII 238608 . A C 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=4.601;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-1.132;QD=15.68;ReadPosRankSum=1.547;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1240,135,0 chrII 238611 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=17.24;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1257,138,0 chrII 238699 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.91;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1939,210,0 chrII 238944 . T A 2736 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.6750;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.71;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2769,294,0 chrII 239097 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1480,159,0 chrII 239528 . A C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=101;Dels=0.00;FS=3.424;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.207;QD=20.11;ReadPosRankSum=1.697;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2064,234,0 chrII 239597 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.13;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2467,261,0 chrII 239951 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.39;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1357,150,0 chrII 239955 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.87;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1320,144,0 chrII 240048 . C A 1515 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.75;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1548,162,0 chrII 241409 . G C 518 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.27;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:60:551,60,0 chrII 241422 . T C 608 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.61;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:69:641,69,0 chrII 241482 . C T 655 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.85;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:72:688,72,0 chrII 242398 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.8648;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.37;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2029,219,0 chrII 242434 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1886,201,0 chrII 243003 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.99;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1880,201,0 chrII 243486 . G A 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=92;Dels=0.00;FS=3.860;HaplotypeScore=6.8364;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.347;QD=17.17;ReadPosRankSum=-0.308;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1613,174,0 chrII 243495 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.837;HaplotypeScore=5.2126;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.210;QD=15.31;ReadPosRankSum=2.394;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1396,159,0 chrII 243609 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.480;QD=20.67;ReadPosRankSum=1.690;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1749,195,0 chrII 243768 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.23;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1601,171,0 chrII 243780 . T A 1445 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.41;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1478,162,0 chrII 243846 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=13.88;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1102,117,0 chrII 244485 . G A 991 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,39:43:99:1024,108,0 chrII 244732 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.84;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1846,201,0 chrII 244779 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.45;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1628,177,0 chrII 244831 . A T 2200 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2233,240,0 chrII 244908 . A C 1897 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.5232;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.08;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1930,213,0 chrII 245034 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.03;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1531,162,0 chrII 245073 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.65;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1410,156,0 chrII 245284 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.256;QD=21.83;ReadPosRankSum=2.916;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1867,204,0 chrII 245305 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.85;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2067,228,0 chrII 245877 . G A 2674 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.66;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2707,285,0 chrII 245946 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.383;QD=23.50;ReadPosRankSum=1.700;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2618,291,0 chrII 246027 . T G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=90;Dels=0.00;FS=5.852;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.360;QD=20.49;ReadPosRankSum=2.900;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1877,207,0 chrII 246313 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.60;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1651,180,0 chrII 246331 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=16.14;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1518,168,0 chrII 247040 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.54;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1814,192,0 chrII 247069 . T A 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.890;QD=21.31;ReadPosRankSum=1.685;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1610,177,0 chrII 247234 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.85;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1244,141,0 chrII 247399 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.66;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1252,144,0 chrII 247522 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.02;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:87:813,87,0 chrII 247531 . C T 697 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.60;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:730,81,0 chrII 248659 . G A 2805 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.97;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2838,303,0 chrII 248671 . C G 2625 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.83;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2658,285,0 chrII 248728 . A G 3412.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.09;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3412,372,0 chrII 248918 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=15.7326;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.61;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1600,168,0 chrII 249928 . A G 1140 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.10;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1173,135,0 chrII 249997 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1833,198,0 chrII 250316 . G A 2774 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2807,297,0 chrII 250537 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.52;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1578,171,0 chrII 251134 . G T 1604 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.65;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1637,174,0 chrII 251145 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.19;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1458,165,0 chrII 251790 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.48;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1107,120,0 chrII 251800 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=21.59;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1091,117,0 chrII 251820 . G C 825 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=15.87;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:858,96,0 chrII 251833 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.59;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1042,117,0 chrII 251887 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.56;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1760,192,0 chrII 252013 . G A 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=6.100;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=-0.346;QD=22.02;ReadPosRankSum=-0.567;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2455,264,0 chrII 252027 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=22.23;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2145,240,0 chrII 252036 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=17.41;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1513,165,0 chrII 252044 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=20.13;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1563,171,0 chrII 252103 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.25;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1219,132,0 chrII 252244 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=-1.667;QD=17.65;ReadPosRankSum=1.699;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1904,213,0 chrII 252271 . T C 1626 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=15.79;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1659,192,0 chrII 252273 . G C 1729 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=16.47;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1762,195,0 chrII 252279 . G A 1738 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=15.94;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1771,189,0 chrII 252423 . C G 1291 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.37;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1324,144,0 chrII 252499 . A T 2015 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.56;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2048,222,0 chrII 252589 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.16;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1983,219,0 chrII 253219 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1732,183,0 chrII 254064 . G T 1728 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1761,186,0 chrII 254142 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2018,213,0 chrII 254281 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.90;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1590,174,0 chrII 254349 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.64;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2423,258,0 chrII 254436 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.13;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1701,195,0 chrII 254742 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.01;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1714,180,0 chrII 254899 . T A 2483 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.4611;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.35;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2516,270,0 chrII 255469 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.75;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1244,132,0 chrII 255688 . T A 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=77;Dels=0.00;FS=6.255;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.410;QD=15.87;ReadPosRankSum=1.687;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1255,138,0 chrII 255743 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.28;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1587,177,0 chrII 256961 . G A 1031 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.77;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1064,111,0 chrII 258269 . C A 1908 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.2677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1941,213,0 chrII 258313 . G C 1953 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=4.4697;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.60;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1986,216,0 chrII 258409 . C A 2393 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5052;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.94;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2426,267,0 chrII 258763 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.80;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2538,273,0 chrII 258851 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.43;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1393,150,0 chrII 258852 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.04;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1485,159,0 chrII 258896 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.37;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:894,102,0 chrII 258945 . G A 1350 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.43;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1383,150,0 chrII 259330 . G A 2314 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6597;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.63;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2347,249,0 chrII 259543 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0012;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=20.09;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1741,186,0 chrII 265775 . G T 2462 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.22;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2495,270,0 chrII 266339 . T A 538 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.93;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:60:571,60,0 chrII 266358 . C T 364 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=15.17;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:42:397,42,0 chrII 266659 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=23.81;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1652,183,0 chrII 267051 . C G 1713 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.92;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1746,195,0 chrII 267598 . A G 1774 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.34;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1807,198,0 chrII 268100 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.5727;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.08;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1866,207,0 chrII 268167 . C T 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.320;QD=24.64;ReadPosRankSum=0.891;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2571,270,0 chrII 268270 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.56;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1650,177,0 chrII 268319 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.70;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1648,186,0 chrII 268398 . G C 1670 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.12;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1703,189,0 chrII 268619 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.64;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1526,162,0 chrII 268644 . G T 1416 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.92;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1449,156,0 chrII 268895 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.33;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1591,171,0 chrII 268913 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=13.66;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1071,120,0 chrII 268925 . C T 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=1.421;QD=12.72;ReadPosRankSum=1.688;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1025,111,0 chrII 268930 . A G 907 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=11.06;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:940,102,0 chrII 268949 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.26;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:889,102,0 chrII 269013 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=8.39;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:72:637,72,0 chrII 269025 . G T 332 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=6.04;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:39:365,39,0 chrII 269026 . T C 320 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=59;Dels=0.00;FS=2.643;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;MQRankSum=-2.018;QD=5.42;ReadPosRankSum=2.087;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:39:353,39,0 chrII 269029 . C A 369 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=5.95;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:42:402,42,0 chrII 269036 . C A 340 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6120;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=0;QD=4.93;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:39:373,39,0 chrII 269210 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.11;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2084,240,0 chrII 269291 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.96;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1739,186,0 chrII 269402 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=19.67;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1528,168,0 chrII 269578 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.74;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1943,210,0 chrII 269653 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.28;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1331,141,0 chrII 269904 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.83;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1223,138,0 chrII 269983 . A G 850 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=2.688;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-0.738;QD=16.35;ReadPosRankSum=2.355;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:883,99,0 chrII 269986 . G A 893 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=17.17;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:926,102,0 chrII 269987 . C T 858 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.50;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:891,99,0 chrII 270164 . T C 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0354;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.820;QD=20.06;ReadPosRankSum=1.696;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1939,213,0 chrII 270191 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.62;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2325,249,0 chrII 270207 . A G 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=114;Dels=0.00;FS=23.275;HaplotypeScore=10.4539;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.402;QD=19.11;ReadPosRankSum=3.688;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:5,106:114:99:2212,240,0 chrII 271006 . T C 450 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.50;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:54:483,54,0 chrII 271115 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1902,210,0 chrII 271265 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.91;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1751,186,0 chrII 271598 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8776;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.22;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2495,270,0 chrII 271912 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1228,129,0 chrII 272420 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2303;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.182;QD=23.56;ReadPosRankSum=1.667;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2554,282,0 chrII 272471 . C T 2360 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.69;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2393,255,0 chrII 272858 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.70;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2051,228,0 chrII 273404 . G C 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.34;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1865,207,0 chrII 273772 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.674;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=1.535;QD=20.12;ReadPosRankSum=1.693;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1824,201,0 chrII 273781 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.78;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1675,189,0 chrII 273923 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.83;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:992,111,0 chrII 273942 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.76;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1194,129,0 chrII 274050 . T C 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=42;Dels=0.00;FS=3.076;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=-2.392;QD=20.05;ReadPosRankSum=2.333;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:96:875,96,0 chrII 274076 . G C 899 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=19.98;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:932,102,0 chrII 274152 . T C 778 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=20.47;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:811,90,0 chrII 274162 . T C 607 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=18.97;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:640,75,0 chrII 274206 . T G 212.01 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.78;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:245,27,0 chrII 274209 . C T 222.01 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=5.9174;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.33;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:255,27,0 chrII 274212 . A C 184.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.9363;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-1.498;QD=8.37;ReadPosRankSum=2.216;SB=-1.636e+02 GT:AD:DP:GQ:PL 1/1:2,20:22:24:217,24,0 chrII 274298 . T A 378 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=14.00;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:411,45,0 chrII 274303 . T A 362 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.08;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:395,42,0 chrII 274352 . A G 529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-1.636;QD=14.69;ReadPosRankSum=1.636;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:66:562,66,0 chrII 274372 . G A 680 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=15.81;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:713,75,0 chrII 274375 . A G 652 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=14.82;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:685,75,0 chrII 274439 . T C 597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.271;QD=15.31;ReadPosRankSum=2.815;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:3,35:39:69:630,69,0 chrII 274460 . T C 670 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.61;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:703,78,0 chrII 274553 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.82;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:938,105,0 chrII 274625 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.93;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1038,111,0 chrII 274920 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1725,189,0 chrII 275880 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.8570;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.74;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1307,138,0 chrII 275968 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1509,168,0 chrII 276052 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.25;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1546,171,0 chrII 276131 . T C 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=3.424;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.787;QD=20.32;ReadPosRankSum=1.522;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1415,159,0 chrII 276137 . T C 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.011;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.357;QD=20.62;ReadPosRankSum=1.681;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1435,162,0 chrII 276150 . T A 1473 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.18;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1506,165,0 chrII 276361 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.42;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1625,186,0 chrII 276526 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.96;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2251,237,0 chrII 276676 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.66;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2069,231,0 chrII 276799 . C G 1477 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.46;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1510,174,0 chrII 277566 . G T 2164 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.52;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2197,234,0 chrII 277633 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=2.994;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.665;QD=20.20;ReadPosRankSum=2.179;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1891,204,0 chrII 278176 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.54;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1588,180,0 chrII 278475 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7018;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.67;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2957,312,0 chrII 278884 . G C 1680 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.54;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1713,189,0 chrII 278927 . A G 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.70;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1875,213,0 chrII 278934 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.02;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2030,228,0 chrII 279623 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.83;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,91:98:99:1878,213,0 chrII 279910 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.62;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1662,177,0 chrII 280109 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.7964;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.07;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1940,219,0 chrII 280277 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.80;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2780,300,0 chrII 280684 . G A 4374.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.44;SB=-2.404e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:4374,463,0 chrII 280810 . A C 1740 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1773,198,0 chrII 281251 . A G 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=7.844;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.773;QD=21.55;ReadPosRankSum=2.362;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1240,141,0 chrII 281281 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.95;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1262,135,0 chrII 281670 . T C 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.892;QD=17.36;ReadPosRankSum=1.680;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1179,129,0 chrII 282128 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.59;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2089,225,0 chrII 282738 . T C 1995 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.47;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2028,225,0 chrII 283018 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.4524;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.95;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2360,252,0 chrII 283056 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.25;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1835,198,0 chrII 283561 . C G 2285 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.40;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2318,258,0 chrII 283573 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.82;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2197,237,0 chrII 283729 . G C 3351.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.95;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3351,369,0 chrII 283800 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.86;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2515,276,0 chrII 283860 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.67;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2203,237,0 chrII 283880 . A T 1993 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=17.79;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2026,228,0 chrII 284107 . T A 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=77;Dels=0.00;FS=5.339;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.663;QD=17.05;ReadPosRankSum=3.059;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:4,73:77:99:1346,147,0 chrII 284108 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.24;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:78:99:1378,150,0 chrII 284437 . G T 2213 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4920;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.35;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2246,246,0 chrII 284893 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.47;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1772,195,0 chrII 285666 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.09;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1178,129,0 chrII 285718 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.16;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1872,207,0 chrII 285829 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1766,198,0 chrII 286002 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.82;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2178,231,0 chrII 286036 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9179;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.70;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2041,222,0 chrII 286327 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.93;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1611,177,0 chrII 286468 . T A 2149 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.47;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2182,237,0 chrII 286762 . A G 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.481;QD=18.00;ReadPosRankSum=1.684;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1365,150,0 chrII 286855 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.13;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1470,156,0 chrII 286894 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.80;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1572,174,0 chrII 287113 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1986,210,0 chrII 287260 . A C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.022;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.688;QD=21.62;ReadPosRankSum=0.622;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1763,195,0 chrII 287483 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.47;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1855,198,0 chrII 287551 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2136;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.378;QD=17.75;ReadPosRankSum=1.669;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1986,228,0 chrII 287818 . A G 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.811;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.341;QD=20.29;ReadPosRankSum=2.343;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1433,159,0 chrII 288081 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.39;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1466,165,0 chrII 288197 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.47;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2137,237,0 chrII 288273 . G T 1320 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.60;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1353,147,0 chrII 288339 . A C 1884 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.66;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1917,210,0 chrII 288498 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.68;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1359,144,0 chrII 288651 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=16.85;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1162,126,0 chrII 288671 . T A 1097 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.24;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1130,126,0 chrII 288693 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=15.10;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1332,150,0 chrII 288717 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=14.49;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1294,141,0 chrII 288768 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=8.8902;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=12.37;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1233,132,0 chrII 288773 . T A 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-2.461;QD=11.05;ReadPosRankSum=2.893;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1171,126,0 chrII 288780 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;QD=11.75;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1231,141,0 chrII 288800 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=12.11;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1256,138,0 chrII 288809 . A C 1192 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=11.80;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1225,138,0 chrII 288880 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.59;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1316,138,0 chrII 288893 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.6550;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.39;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1268,132,0 chrII 288970 . T C 1013 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.88;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1046,117,0 chrII 288986 . T C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=66;Dels=0.00;FS=12.786;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-1.110;QD=16.95;ReadPosRankSum=2.798;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:3,62:66:99:1152,129,0 chrII 289069 . G C 1582 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.40;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1615,180,0 chrII 289132 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=19.90;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1645,180,0 chrII 289364 . A C 1319 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.98;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1352,153,0 chrII 289409 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.25;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1410,156,0 chrII 289601 . C A 1760 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.47;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1793,186,0 chrII 289642 . A G 1371 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.46;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1404,153,0 chrII 289723 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.80;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1364,144,0 chrII 289906 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1937,204,0 chrII 289966 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.069;QD=21.93;ReadPosRankSum=1.686;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1678,183,0 chrII 290197 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.07;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1378,156,0 chrII 290233 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.37;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1155,126,0 chrII 290619 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.16;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1676,177,0 chrII 290804 . A G 1635 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1668,189,0 chrII 291425 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3809;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.00;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1944,219,0 chrII 291653 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.93;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1252,141,0 chrII 291976 . C G 1084 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.85;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1117,123,0 chrII 292193 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=24.06;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1717,180,0 chrII 292257 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=26.09;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1729,183,0 chrII 292285 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.69;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1959,213,0 chrII 292338 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.92;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2004,222,0 chrII 292578 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.91;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1716,180,0 chrII 292600 . A G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=77.0664;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.391;QD=18.57;ReadPosRankSum=1.695;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1760,195,0 chrII 292676 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6412;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.47;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2060,216,0 chrII 292748 . C G 2603 SnpCluster AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.57;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2636,291,0 chrII 292752 . T C 2637 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=5.653;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.178;QD=19.39;ReadPosRankSum=1.656;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2670,294,0 chrII 292755 . A G 2584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.786;QD=19.00;ReadPosRankSum=2.413;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,134:136:99:2617,288,0 chrII 292835 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.97;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1970,213,0 chrII 292860 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.35;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1648,186,0 chrII 292870 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.01;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1756,195,0 chrII 292964 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.98;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1732,189,0 chrII 292991 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.80;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1637,180,0 chrII 293020 . A C 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.6060;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.016;QD=16.78;ReadPosRankSum=1.059;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1342,147,0 chrII 293099 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.55;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2200,234,0 chrII 293354 . A C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.369;QD=21.23;ReadPosRankSum=1.619;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1328,147,0 chrII 293399 . T G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=75;Dels=0.00;FS=23.077;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.908;QD=17.65;ReadPosRankSum=3.077;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1357,150,0 chrII 293405 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.74;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1551,174,0 chrII 293501 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.24;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1936,216,0 chrII 293504 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.58;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1988,219,0 chrII 294230 . C T 716 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.90;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:81:749,81,0 chrII 294623 . G A 634 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.45;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:667,75,0 chrII 295631 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.49;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1754,183,0 chrII 295710 . C G 2713 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9676;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.80;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2746,306,0 chrII 295912 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=14.93;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1168,138,0 chrII 295988 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.78;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1425,156,0 chrII 296073 . G C 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=21.32;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,189,0 chrII 296774 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.02;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1883,210,0 chrII 297226 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.44;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2002,210,0 chrII 297266 . A G 2220 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2253,249,0 chrII 297515 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2243,237,0 chrII 298141 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.4943;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.21;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2135,231,0 chrII 298349 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.28;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1392,159,0 chrII 298721 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.73;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1489,159,0 chrII 298732 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.57;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1327,147,0 chrII 298759 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=0.115;QD=20.65;ReadPosRankSum=1.640;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1582,180,0 chrII 298966 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.95;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2030,219,0 chrII 298990 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.96;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1710,183,0 chrII 299034 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=0.234;QD=20.74;ReadPosRankSum=1.685;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1568,171,0 chrII 299050 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.60;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1465,162,0 chrII 299174 . T C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.741;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=0.539;QD=20.45;ReadPosRankSum=2.388;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1669,189,0 chrII 299182 . T C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=84;Dels=0.00;FS=2.613;HaplotypeScore=5.9211;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=0.222;QD=20.12;ReadPosRankSum=2.840;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:3,79:84:99:1723,198,0 chrII 299196 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=1.347;QD=20.24;ReadPosRankSum=1.592;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2037,225,0 chrII 299452 . C A 2256 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4550;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.69;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2289,246,0 chrII 299505 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=0.478;QD=16.38;ReadPosRankSum=1.699;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1753,192,0 chrII 299524 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=13.17;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1495,165,0 chrII 299803 . C A 1264 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.87;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1297,138,0 chrII 300001 . A T 222.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=15.86;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:255,27,0 chrII 300111 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=20.77;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1736,192,0 chrII 300849 . C T 1565 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=14;QD=15.19;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1598,177,0 chrII 301002 . T C 347 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=13;MQRankSum=-1.953;QD=9.13;ReadPosRankSum=2.254;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:2,35:38:42:380,42,0 chrII 301044 . C T 353 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=1;QD=17.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:20:42:386,42,0 chrII 301324 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.95;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1416,150,0 chrII 301357 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=13.9063;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.66;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1640,174,0 chrII 301399 . T C 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.547;QD=21.58;ReadPosRankSum=1.687;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1695,186,0 chrII 301406 . T A 1671 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.28;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1704,192,0 chrII 301455 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.90;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2026,219,0 chrII 301569 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.95;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1410,156,0 chrII 301589 . G C 1282 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.89;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1315,141,0 chrII 301937 . T A 2042 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.72;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2075,231,0 chrII 301999 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.58;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2191,234,0 chrII 302104 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1410,162,0 chrII 302192 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.64;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1604,180,0 chrII 302245 . G C 1874 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.73;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1907,207,0 chrII 302260 . T A 1969 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.89;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2002,207,0 chrII 302285 . T C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.478;HaplotypeScore=5.8235;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.636;QD=18.22;ReadPosRankSum=1.697;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1819,201,0 chrII 302473 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.582;QD=21.52;ReadPosRankSum=1.657;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2013,222,0 chrII 302559 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.65;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1871,198,0 chrII 302822 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.80;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1443,153,0 chrII 302839 . T G 1230 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.85;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1263,141,0 chrII 303237 . T C 1140 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.35;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1173,126,0 chrII 303295 . T G 1070 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.58;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1103,120,0 chrII 303435 . T C 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.3237;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.635;QD=20.60;ReadPosRankSum=1.635;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1516,165,0 chrII 303452 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.23;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1367,144,0 chrII 303465 . T C 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.632;QD=19.21;ReadPosRankSum=1.677;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1243,138,0 chrII 303528 . C G 833 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=17.00;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:866,96,0 chrII 303540 . C T 849 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.06;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:882,96,0 chrII 304001 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.17;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1607,180,0 chrII 304081 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.31;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1674,180,0 chrII 304221 . G C 2103 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.46;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2136,231,0 chrII 304314 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.25;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2243,258,0 chrII 304737 . A T 3109 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3142,342,0 chrII 306242 . T G 1336 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.29;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1369,159,0 chrII 306376 . G A 946 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.00;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:979,105,0 chrII 306980 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.55;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1675,189,0 chrII 307364 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=5.643;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.228;QD=20.59;ReadPosRankSum=1.669;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1186,132,0 chrII 307382 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.017;QD=20.20;ReadPosRankSum=1.677;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1326,150,0 chrII 307459 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.32;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:949,108,0 chrII 307537 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.78;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1354,147,0 chrII 307613 . C A 782 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=22.34;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:815,87,0 chrII 307713 . C T 876 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.25;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:909,99,0 chrII 307808 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.18;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1142,120,0 chrII 307810 . A G 1055 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.75;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1088,126,0 chrII 307858 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.58;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1061,120,0 chrII 307943 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.21;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1051,111,0 chrII 307944 . T C 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.266;QD=18.34;ReadPosRankSum=1.666;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1005,111,0 chrII 307989 . T C 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-1.314;QD=16.74;ReadPosRankSum=1.673;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1004,108,0 chrII 307994 . C A 1031 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=16.90;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1064,117,0 chrII 308006 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.46;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1152,126,0 chrII 308083 . A G 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.239;QD=20.21;ReadPosRankSum=1.673;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1205,132,0 chrII 308205 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.08;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1510,171,0 chrII 308422 . C T 1211 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.22;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1244,132,0 chrII 308477 . T C 966 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:999,111,0 chrII 308634 . T A 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=46;Dels=0.00;FS=7.085;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.301;QD=20.78;ReadPosRankSum=1.657;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:989,105,0 chrII 308690 . G A 1069 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.43;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1102,117,0 chrII 308805 . T C 493 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.61;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:526,60,0 chrII 308890 . A G 432 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.00;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:465,51,0 chrII 309603 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1960,207,0 chrII 309822 . C T 2802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.575;QD=21.23;ReadPosRankSum=-1.496;SB=-1.691e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2835,306,0 chrII 310032 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.21;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1402,159,0 chrII 310088 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.28;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1899,201,0 chrII 310185 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.76;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1778,198,0 chrII 310381 . A C 1216 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.88;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1249,132,0 chrII 310571 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,140:143:99:3276,360,0 chrII 310706 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=16.56;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1076,117,0 chrII 310769 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.60;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1475,159,0 chrII 310972 . G C 2101 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.01;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2134,243,0 chrII 311267 . G C 1650 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.71;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1683,186,0 chrII 311366 . A C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.111;QD=20.20;ReadPosRankSum=1.658;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1932,216,0 chrII 311676 . A G 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=69;Dels=0.00;FS=2.615;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.198;QD=17.41;ReadPosRankSum=2.835;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:3,65:69:99:1234,138,0 chrII 312029 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.08;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1459,162,0 chrII 312167 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.3845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1836,198,0 chrII 312596 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2268,240,0 chrII 312686 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=9.433;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.788;QD=19.87;ReadPosRankSum=2.869;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2020,222,0 chrII 312860 . T C 1997 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.02;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2030,228,0 chrII 312887 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.67;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1790,192,0 chrII 313265 . G A 899 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=15.77;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:932,99,0 chrII 313427 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=87;Dels=0.00;FS=4.944;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.010;QD=20.46;ReadPosRankSum=3.293;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:99:1813,201,0 chrII 313448 . C T 2142 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.86;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2175,237,0 chrII 313595 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.73;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1665,183,0 chrII 313673 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.15;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1081,117,0 chrII 313835 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.75;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2087,219,0 chrII 313868 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.04;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2053,219,0 chrII 313940 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.41;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1848,198,0 chrII 314009 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.83;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2011,219,0 chrII 314198 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.165;QD=19.68;ReadPosRankSum=1.691;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1686,183,0 chrII 314258 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1186,126,0 chrII 314330 . G A 1541 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.11;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1574,168,0 chrII 314791 . G T 1250 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.55;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1283,135,0 chrII 315082 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.71;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1075,120,0 chrII 315177 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.46;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2577,276,0 chrII 315271 . C T 2836 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.88;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2869,303,0 chrII 315318 . T A 2961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=133;Dels=0.00;FS=3.035;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.804;QD=22.26;ReadPosRankSum=2.336;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2994,327,0 chrII 315344 . T A 2558 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.44;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2591,276,0 chrII 315436 . G T 1186 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1219,132,0 chrII 315524 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.53;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1723,189,0 chrII 315559 . A T 1807 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.77;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1840,198,0 chrII 315655 . T C 2120 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.20;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2153,240,0 chrII 315988 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.32;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1737,189,0 chrII 316012 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.54;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1506,162,0 chrII 316150 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.1028;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.78;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1873,201,0 chrII 316739 . A T 955 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.10;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:988,108,0 chrII 316919 . G A 645 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.89;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:72:678,72,0 chrII 316953 . A C 313 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;DP=27;Dels=0.00;FS=39.763;HaplotypeScore=7.7163;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.666;QD=11.59;ReadPosRankSum=0.074;SB=3.42 GT:AD:DP:GQ:PL 1/1:11,16:27:42:346,42,0 chrII 317033 . T C 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=42;Dels=0.00;FS=5.857;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.002;QD=18.24;ReadPosRankSum=2.833;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:3,39:42:87:799,87,0 chrII 317069 . C A 1336 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.21;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1369,150,0 chrII 317339 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.90;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1391,150,0 chrII 317493 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.4837;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.87;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2120,228,0 chrII 317666 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.66;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1783,192,0 chrII 317687 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.89;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1871,201,0 chrII 318192 . G C 1382 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.83;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1415,153,0 chrII 318225 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=1.121;QD=22.18;ReadPosRankSum=1.681;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1541,171,0 chrII 318380 . A G 1303 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.86;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1336,153,0 chrII 318817 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.22;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1306,144,0 chrII 319416 . A G 2043 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2076,225,0 chrII 319900 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.95;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1250,138,0 chrII 320188 . T C 1865 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.22;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1898,207,0 chrII 320428 . A G 3721.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.9429;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.32;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:1,150:153:99:3721,405,0 chrII 320491 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.22;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1723,180,0 chrII 320539 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.85;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,216,0 chrII 320583 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.29;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2548,267,0 chrII 320632 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.00;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2616,276,0 chrII 320644 . T G 2573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=128;Dels=0.00;FS=3.219;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.162;QD=20.10;ReadPosRankSum=1.705;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2606,285,0 chrII 320656 . A G 2765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=137;Dels=0.00;FS=10.470;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.605;QD=20.18;ReadPosRankSum=2.948;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:3,132:137:99:2798,309,0 chrII 320692 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.08;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2403,255,0 chrII 320788 . A T 2239 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2272,243,0 chrII 320851 . T C 2534 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2567,282,0 chrII 321222 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.31;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1462,159,0 chrII 321310 . A G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.525;QD=19.82;ReadPosRankSum=1.681;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1361,147,0 chrII 321553 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.15;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1362,144,0 chrII 321773 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.04;FS=0.000;HaplotypeScore=24.8170;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.84;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2441,264,0 chrII 321857 . G T 1699 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=82.2520;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=16.50;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1732,186,0 chrII 321867 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=10.4267;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=13.19;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1392,147,0 chrII 321906 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=111;Dels=0.00;FS=5.942;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.315;QD=16.59;ReadPosRankSum=1.701;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1874,198,0 chrII 322182 . A T 2203 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.67;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2236,249,0 chrII 322610 . G C 1708 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.47;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1741,189,0 chrII 322704 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.33;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1639,174,0 chrII 322869 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1843,204,0 chrII 322968 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.276;QD=19.99;ReadPosRankSum=1.687;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1552,174,0 chrII 323106 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1939,210,0 chrII 323214 . C G 2112 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1200;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.47;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2145,231,0 chrII 323577 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.68;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1961,222,0 chrII 324106 . A C 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DP=98;Dels=0.00;FS=3.048;HaplotypeScore=10.9633;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.671;QD=20.34;ReadPosRankSum=2.400;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2026,219,0 chrII 324220 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1111,120,0 chrII 324914 . C A 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.1847;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.294;QD=19.15;ReadPosRankSum=1.699;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2082,225,0 chrII 325202 . A G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.586;DP=104;Dels=0.00;FS=22.630;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.945;QD=20.08;ReadPosRankSum=3.662;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:5,99:104:99:2121,231,0 chrII 325481 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.8682;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.66;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2202,237,0 chrII 325620 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.9514;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.39;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2151,225,0 chrII 325664 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.00;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1735,183,0 chrII 325701 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.88;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1346,150,0 chrII 325802 . T C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=3.802;HaplotypeScore=4.1987;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.485;QD=17.27;ReadPosRankSum=1.608;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1501,165,0 chrII 325889 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1049;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.58;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1798,201,0 chrII 325963 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.72;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1919,201,0 chrII 326118 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.61;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1351,144,0 chrII 326179 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=10.5752;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.00;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1398,153,0 chrII 326267 . A T 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.01;FS=3.660;HaplotypeScore=3.7432;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.962;QD=22.11;ReadPosRankSum=1.684;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1647,174,0 chrII 326278 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.37;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1486,162,0 chrII 326293 . A T 1569 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.43;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1602,177,0 chrII 326339 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=16.26;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1334,150,0 chrII 326357 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.43;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1497,162,0 chrII 326394 . A G 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.192;QD=17.19;ReadPosRankSum=1.636;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1271,141,0 chrII 326411 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=15.81;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:966,105,0 chrII 326592 . T A 1359 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.62;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1392,150,0 chrII 326661 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.35;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2296,246,0 chrII 326899 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.74;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2055,219,0 chrII 327005 . A T 2532 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2805;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.59;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2565,279,0 chrII 327053 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.24;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2724,306,0 chrII 327179 . A G 3801.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.32;SB=-2.020e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3801,408,0 chrII 327258 . T C 2925 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,130:134:99:2958,327,0 chrII 327403 . C T 3622.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.525e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3622,387,0 chrII 327511 . A T 2766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.31;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2799,306,0 chrII 327596 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.244;QD=22.79;ReadPosRankSum=1.683;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1651,183,0 chrII 327761 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.43;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2568,279,0 chrII 327972 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.70;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1787,195,0 chrII 327989 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.83;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1471,168,0 chrII 328068 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2459,261,0 chrII 328168 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.72;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1966,216,0 chrII 328179 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.21;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1963,216,0 chrII 328278 . A C 2253 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.86;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2286,249,0 chrII 328416 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.85;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1843,207,0 chrII 328525 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=15.72;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1196,135,0 chrII 328805 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2237,237,0 chrII 328908 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.07;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1234,141,0 chrII 329121 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.16;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1389,153,0 chrII 329185 . G C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8812;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.648;QD=21.37;ReadPosRankSum=0.929;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1785,195,0 chrII 329578 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.82;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:976,102,0 chrII 329701 . G A 883 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:916,96,0 chrII 329880 . C G 1161 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.70;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1194,126,0 chrII 330203 . T A 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=65;Dels=0.00;FS=4.376;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.402;QD=21.85;ReadPosRankSum=1.677;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1453,156,0 chrII 330681 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1463,156,0 chrII 330864 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.85;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1430,156,0 chrII 331253 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.04;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1692,180,0 chrII 331320 . T A 1940 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.80;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1973,210,0 chrII 331350 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.72;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1630,177,0 chrII 331446 . T A 2542 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.76;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2575,285,0 chrII 331580 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1640,177,0 chrII 331804 . A G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.266;QD=22.08;ReadPosRankSum=1.666;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2351,255,0 chrII 331827 . T A 1869 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.27;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1902,210,0 chrII 331895 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1326,147,0 chrII 331937 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1273,144,0 chrII 332548 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.71;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1466,162,0 chrII 332630 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.70;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1230,129,0 chrII 332654 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.060;QD=17.77;ReadPosRankSum=1.692;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1579,177,0 chrII 332939 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.30;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1311,144,0 chrII 332940 . C G 1270 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.17;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1303,144,0 chrII 332992 . C G 828 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.56;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:861,93,0 chrII 332993 . G A 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=50;Dels=0.00;FS=7.482;HaplotypeScore=6.9178;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=0.733;QD=16.92;ReadPosRankSum=2.249;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:93:879,93,0 chrII 333235 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.12;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1818,198,0 chrII 333270 . A T 1532 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.28;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1565,168,0 chrII 333321 . G A 929 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=16.30;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:962,102,0 chrII 333347 . T A 1080 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.12;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1113,126,0 chrII 333382 . T A 1679 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.09;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1712,180,0 chrII 335310 . A G 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.24;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2178,234,0 chrII 336456 . G A 2928 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.77;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2961,321,0 chrII 336492 . C T 3533.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.1193;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.28;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,164:166:99:3533,372,0 chrII 336564 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2092;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=16.52;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2709,288,0 chrII 336567 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=16.06;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:2699,288,0 chrII 336591 . A G 2515 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=15.52;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2548,285,0 chrII 336720 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.23;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2110,225,0 chrII 336747 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.93;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2026,225,0 chrII 337074 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.88;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:938,105,0 chrII 337075 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=16.48;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:956,105,0 chrII 337088 . A C 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.540;QD=14.33;ReadPosRankSum=1.604;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:90:807,90,0 chrII 337627 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.89;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2130,237,0 chrII 338656 . A T 2182 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9275;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.60;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2215,240,0 chrII 338664 . A T 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.099;QD=16.79;ReadPosRankSum=1.704;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2098,228,0 chrII 338668 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=16.67;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2084,222,0 chrII 339083 . T G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.402;QD=19.76;ReadPosRankSum=1.487;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1989,222,0 chrII 339200 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.09;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1143,123,0 chrII 339511 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1210,138,0 chrII 339739 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.73;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2076,234,0 chrII 340020 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.8049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2135,234,0 chrII 340500 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.64;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1263,141,0 chrII 340559 . A T 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.762;QD=18.42;ReadPosRankSum=1.663;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:954,105,0 chrII 340757 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.08;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1856,201,0 chrII 340842 . A T 1010 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.72;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1043,114,0 chrII 340843 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.32;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1020,111,0 chrII 341186 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.96;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2255,249,0 chrII 341233 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=3.051;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.019;QD=19.14;ReadPosRankSum=2.379;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1354,156,0 chrII 341318 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.84;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1518,165,0 chrII 341391 . T A 1194 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.59;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1227,135,0 chrII 341451 . A G 2635 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.11;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2668,291,0 chrII 341571 . G C 1309 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.83;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1342,150,0 chrII 342023 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.27;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1652,177,0 chrII 342025 . G C 1662 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.33;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1695,183,0 chrII 342041 . A G 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.211;QD=18.44;ReadPosRankSum=1.690;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1545,171,0 chrII 342383 . G T 1300 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.63;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1333,141,0 chrII 342723 . C T 766 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.28;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:799,84,0 chrII 343730 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.87;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2434,267,0 chrII 343845 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.99;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1970,213,0 chrII 344668 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.37;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1703,189,0 chrII 344710 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.14;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1576,171,0 chrII 344769 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.13;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1781,189,0 chrII 346437 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.67;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1213,132,0 chrII 347244 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1145,129,0 chrII 347440 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1658,183,0 chrII 347777 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.58;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1165,135,0 chrII 347856 . T G 1508 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.85;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1541,165,0 chrII 347935 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.90;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1706,186,0 chrII 348700 . C A 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.012;DP=79;Dels=0.00;FS=3.680;HaplotypeScore=3.4907;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.597;QD=21.97;ReadPosRankSum=1.282;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1769,189,0 chrII 348820 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.51;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1924,207,0 chrII 349415 . A T 1819 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=23.93;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1852,198,0 chrII 349443 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=59.9235;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=25.24;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1951,207,0 chrII 349467 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=22.54;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1543,171,0 chrII 349506 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.89;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1062,120,0 chrII 349572 . A T 956 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.73;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:989,108,0 chrII 349747 . A C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.400;QD=20.75;ReadPosRankSum=1.626;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1382,156,0 chrII 349779 . A G 808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=45.5096;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=-0.306;QD=15.84;ReadPosRankSum=1.121;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:93:841,93,0 chrII 349989 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.37;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1660,183,0 chrII 350008 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.24;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1419,159,0 chrII 350030 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.60;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1797,201,0 chrII 350081 . T C 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=1.404;QD=23.53;ReadPosRankSum=1.696;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2268,252,0 chrII 350131 . T C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.494;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;MQRankSum=-0.860;QD=17.65;ReadPosRankSum=3.494;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:5,70:75:99:1357,153,0 chrII 350135 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=16.71;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1403,153,0 chrII 350168 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=15.69;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1649,183,0 chrII 350178 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.5579;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=16.31;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2006,222,0 chrII 350218 . T C 2595 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=18.40;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2628,294,0 chrII 350376 . T C 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=6.203;HaplotypeScore=68.5157;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-0.904;QD=15.92;ReadPosRankSum=2.796;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1211,135,0 chrII 350442 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=12.6338;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.37;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1979,216,0 chrII 350454 . T A 2049 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=15.64;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2082,228,0 chrII 350491 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=15.79;SB=-1.811e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2449,264,0 chrII 350507 . A G 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=155;Dels=0.00;FS=2.943;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;MQRankSum=-1.070;QD=15.17;ReadPosRankSum=1.974;SB=-1.771e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:99:2385,264,0 chrII 350563 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.79;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2203,240,0 chrII 350580 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.14;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2295,243,0 chrII 350657 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=20.28;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1635,177,0 chrII 350675 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=18.83;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1728,189,0 chrII 350686 . A C 1682 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=18.69;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1715,189,0 chrII 350698 . C G 1551 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=18.46;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1584,177,0 chrII 350727 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=17.49;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1432,162,0 chrII 350797 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.08;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2329,249,0 chrII 350900 . A C 1315 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.87;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1348,150,0 chrII 351158 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.905;QD=22.92;ReadPosRankSum=1.614;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2050,228,0 chrII 351335 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.15;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1931,204,0 chrII 351617 . T C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=10.128;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.968;QD=16.89;ReadPosRankSum=2.381;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:1874,210,0 chrII 351623 . A G 1852 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.16;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1885,213,0 chrII 351938 . G T 768 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=12.2758;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=20.21;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:84:801,84,0 chrII 351999 . G A 728 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=13.74;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:761,81,0 chrII 352027 . T G 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.3350;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.104;QD=20.06;ReadPosRankSum=2.481;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:99:1016,111,0 chrII 352358 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.67;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1552,165,0 chrII 352403 . T C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.643;QD=16.45;ReadPosRankSum=1.584;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1201,135,0 chrII 352781 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.8050;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.14;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2468,264,0 chrII 353708 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.235;QD=18.75;ReadPosRankSum=1.561;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1552,168,0 chrII 353810 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.67;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1169,126,0 chrII 354093 . A T 2249 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.62;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2282,240,0 chrII 354284 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.00;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2167,234,0 chrII 354614 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.43;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1490,165,0 chrII 354629 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.45;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1380,150,0 chrII 354704 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1081,117,0 chrII 354791 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.27;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1330,147,0 chrII 355034 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.66;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1314,144,0 chrII 355349 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.68;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1568,168,0 chrII 355406 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.81;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1839,192,0 chrII 355622 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.53;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1478,159,0 chrII 355626 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.84;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1465,156,0 chrII 355748 . T G 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.114;QD=19.61;ReadPosRankSum=1.691;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1700,198,0 chrII 355836 . A G 1939 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.54;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1972,216,0 chrII 356060 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.12;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1321,147,0 chrII 356128 . T C 2175 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.77;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2208,240,0 chrII 356462 . C G 2658 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.2312;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.44;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2691,315,0 chrII 356546 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.36;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1614,174,0 chrII 356648 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.77;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1685,183,0 chrII 356897 . C T 3366.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.9376;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.91;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,154:161:99:3366,360,0 chrII 356920 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.0948;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.36;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2720,297,0 chrII 357199 . A G 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=139;Dels=0.00;FS=3.100;HaplotypeScore=11.3312;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.301;QD=17.76;ReadPosRankSum=2.252;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,136:139:99:2502,279,0 chrII 357536 . G T 1636 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1669,177,0 chrII 357641 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.05;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1397,147,0 chrII 357683 . C A 1703 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.56;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1736,189,0 chrII 358229 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2034,216,0 chrII 358277 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,108:114:99:2393,252,0 chrII 358898 . G C 1406 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1439,162,0 chrII 359111 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1249,138,0 chrII 359662 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1263,138,0 chrII 359978 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.54;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2424,258,0 chrII 360466 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.724;DP=69;Dels=0.00;FS=10.353;HaplotypeScore=12.0369;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=2.232;QD=19.87;ReadPosRankSum=1.543;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1404,133,0 chrII 361315 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.7713;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.78;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2298,252,0 chrII 361354 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.13;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2224,234,0 chrII 361468 . T C 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=4.455;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.098;QD=18.22;ReadPosRankSum=1.667;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1017,114,0 chrII 361669 . G A 843 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.56;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:876,93,0 chrII 362354 . C T 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=77;Dels=0.00;FS=3.126;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.231;QD=19.99;ReadPosRankSum=-1.687;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1572,168,0 chrII 362377 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.35;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1178,129,0 chrII 362570 . T G 2857 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.64;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2890,315,0 chrII 362595 . T G 3022 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.99;SB=-1.793e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3055,339,0 chrII 362800 . G C 1929 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.29;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1962,216,0 chrII 362833 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.38;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1913,204,0 chrII 362890 . C G 2242 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.98;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2275,249,0 chrII 363091 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=5.728;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.000;QD=21.97;ReadPosRankSum=1.652;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1922,207,0 chrII 363228 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.83;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1652,186,0 chrII 364073 . C T 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=1.102;QD=23.14;ReadPosRankSum=1.242;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2324,249,0 chrII 364161 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.368;QD=19.64;ReadPosRankSum=1.687;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1526,168,0 chrII 364175 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.96;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1290,144,0 chrII 364339 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.43;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1379,150,0 chrII 364408 . A G 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.405;QD=18.70;ReadPosRankSum=1.659;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:912,99,0 chrII 364419 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=14.25;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:69:660,69,0 chrII 364531 . C T 763 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=14.67;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:796,87,0 chrII 364538 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.31;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:930,99,0 chrII 364635 . C T 312 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=7.80;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:36:345,36,0 chrII 364642 . A G 344 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=8.19;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:45:377,45,0 chrII 364682 . T A 892 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=15.12;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:925,99,0 chrII 364733 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.691;QD=23.75;ReadPosRankSum=2.367;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1434,159,0 chrII 364895 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.28;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1128,123,0 chrII 365326 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.81;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1552,168,0 chrII 365525 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.96;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1869,204,0 chrII 365830 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.11;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1227,129,0 chrII 366120 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.00;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2121,225,0 chrII 366264 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.54;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2424,264,0 chrII 366323 . T A 2848 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.9109;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.25;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2881,303,0 chrII 366457 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.68;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1341,144,0 chrII 366558 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.50;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2891,309,0 chrII 366754 . C T 832 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,37:40:90:865,90,0 chrII 366921 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.79;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2216,240,0 chrII 367429 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.14;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1644,180,0 chrII 367502 . T C 1834 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.38;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1867,201,0 chrII 367503 . T C 1789 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.88;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1822,204,0 chrII 367531 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.59;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1581,168,0 chrII 367587 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=14.41;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:93:840,93,0 chrII 367600 . G T 1137 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.05;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1170,123,0 chrII 367774 . A T 2070 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5351;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.26;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2103,225,0 chrII 367870 . G T 1613 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.5782;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.73;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1646,180,0 chrII 368093 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.41;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1893,198,0 chrII 368496 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.16;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1470,153,0 chrII 368565 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.76;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:66:99:1337,147,0 chrII 368630 . T G 1516 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.35;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1549,168,0 chrII 369025 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.07;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1334,144,0 chrII 369040 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.41;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1356,147,0 chrII 369085 . T C 1129 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=15.05;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1162,129,0 chrII 369229 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1559;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.27;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1802,189,0 chrII 370704 . A G 731 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.40;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:764,87,0 chrII 370736 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1207,132,0 chrII 371139 . T G 541 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.03;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:574,63,0 chrII 371746 . A C 1284 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1317,147,0 chrII 372547 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.891;QD=20.11;ReadPosRankSum=1.698;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2124,234,0 chrII 372730 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.46;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1668,183,0 chrII 372954 . C T 650 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=11.40;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:72:683,72,0 chrII 372958 . T C 665 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=12.09;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:698,78,0 chrII 373488 . A C 1696 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.32;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1729,189,0 chrII 373782 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.91;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1508,168,0 chrII 373790 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.39;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1507,159,0 chrII 374072 . T C 2652 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.89;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2685,294,0 chrII 375013 . G A 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=4.865;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.577;QD=23.42;ReadPosRankSum=0.455;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3302,351,0 chrII 375303 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.29;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1749,195,0 chrII 375370 . T A 1713 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.15;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1746,189,0 chrII 375505 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.72;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1165,126,0 chrII 375760 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.16;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1939,213,0 chrII 375892 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.49;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1992,210,0 chrII 375942 . T C 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.914;QD=19.37;ReadPosRankSum=2.369;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1815,204,0 chrII 375969 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.99;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1666,177,0 chrII 375972 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.34;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1684,180,0 chrII 376093 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.41;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1809,192,0 chrII 376375 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.81;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1858,201,0 chrII 376405 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.69;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1644,180,0 chrII 376523 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.42;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1407,153,0 chrII 376637 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7994;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.74;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1261,138,0 chrII 376667 . A G 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.732;QD=22.18;ReadPosRankSum=1.675;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1364,150,0 chrII 377588 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.261;HaplotypeScore=9.8771;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.487;QD=19.56;ReadPosRankSum=1.654;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1793,207,0 chrII 377622 . T C 1834 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.81;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1867,213,0 chrII 377646 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.80;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2133,222,0 chrII 377735 . C T 2607 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.86;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2640,279,0 chrII 377771 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.41;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,115:120:99:2362,261,0 chrII 378868 . C G 1325 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.4764;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.46;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1358,147,0 chrII 379407 . A G 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.400;QD=18.50;ReadPosRankSum=1.679;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1254,138,0 chrII 379421 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.03;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1346,147,0 chrII 379464 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=14.52;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:919,102,0 chrII 379470 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.11;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:837,90,0 chrII 379598 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.52;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1014,111,0 chrII 379638 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=2.995;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-2.313;QD=19.33;ReadPosRankSum=2.359;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1077,120,0 chrII 379974 . A G 996 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1029,111,0 chrII 380911 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=15.2963;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=13.91;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:951,108,0 chrII 380932 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=12.84;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:906,96,0 chrII 380952 . C A 1243 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=15.35;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1276,138,0 chrII 380971 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.65;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1515,162,0 chrII 381431 . A T 2166 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2199,237,0 chrII 382571 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.43;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1647,180,0 chrII 382584 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3882;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.59;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1528,174,0 chrII 382644 . G A 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;DP=87;Dels=0.00;FS=3.731;HaplotypeScore=10.5612;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.365;QD=20.02;ReadPosRankSum=1.569;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1775,171,0 chrII 382823 . A G 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=85;Dels=0.00;FS=4.109;HaplotypeScore=11.9124;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.202;QD=18.29;ReadPosRankSum=-0.836;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1588,174,0 chrII 382847 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=10.1628;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.29;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1566,168,0 chrII 382880 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.27;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1266,135,0 chrII 382911 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.23;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1015,111,0 chrII 383124 . A T 1292 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2055;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.00;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1325,144,0 chrII 383390 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.69;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1833,201,0 chrII 383768 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2247,240,0 chrII 384269 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=5.185;HaplotypeScore=3.9420;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.575;QD=21.09;ReadPosRankSum=1.680;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1425,156,0 chrII 384458 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.23;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1031,111,0 chrII 384578 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.76;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:925,99,0 chrII 384692 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.25;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1265,138,0 chrII 384983 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1724,195,0 chrII 385232 . A G 1140 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.5350;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.32;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1173,135,0 chrII 385445 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.56;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2402,264,0 chrII 385559 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.26;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1883,204,0 chrII 385766 . A T 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=21.26;ReadPosRankSum=1.668;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1181,129,0 chrII 385925 . A C 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=86;Dels=0.00;FS=5.031;HaplotypeScore=3.5137;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.652;QD=19.37;ReadPosRankSum=1.652;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1699,186,0 chrII 386954 . A T 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=5.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.666;QD=19.08;ReadPosRankSum=1.656;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1769,198,0 chrII 386957 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.91;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1805,198,0 chrII 387239 . A T 1669 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.11;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1702,180,0 chrII 387602 . A T 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=9.0809;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.644;QD=19.21;ReadPosRankSum=1.644;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1570,171,0 chrII 387923 . T C 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=3.060;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.016;QD=20.14;ReadPosRankSum=2.325;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1624,177,0 chrII 389690 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1024,114,0 chrII 389875 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.61;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1756,195,0 chrII 390461 . A T 1046 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.35;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1079,117,0 chrII 391082 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.85;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1284,144,0 chrII 391457 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.12;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2276,252,0 chrII 391493 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=5.5461;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.000;QD=19.33;ReadPosRankSum=1.694;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1811,207,0 chrII 392022 . T A 2558 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.44;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2591,279,0 chrII 392135 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.41;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1625,171,0 chrII 392785 . T G 1109 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=15.62;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1142,129,0 chrII 393191 . A T 821 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.09;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:854,90,0 chrII 393470 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.230;QD=22.04;ReadPosRankSum=1.649;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1862,204,0 chrII 393507 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.19;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2025,213,0 chrII 393519 . A T 2240 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.36;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2273,243,0 chrII 393708 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.563;QD=19.32;ReadPosRankSum=1.689;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1579,171,0 chrII 394376 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=18.07;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2219,246,0 chrII 394430 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8749;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.66;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2569,282,0 chrII 394726 . G C 1126 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=12.24;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1159,126,0 chrII 395030 . A G 178.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.18;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:211,24,0 chrII 395115 . C T 346 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-8.700e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:379,42,0 chrII 395185 . G T 629 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:662,72,0 chrII 395218 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.17;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1216,132,0 chrII 395258 . C A 1314 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.05;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1347,150,0 chrII 395349 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.14;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2072,225,0 chrII 395656 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.03;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2156,228,0 chrII 395928 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.89;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1607,174,0 chrII 396967 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2180,237,0 chrII 397645 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.29;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1433,162,0 chrII 397783 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.60;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2022,216,0 chrII 397813 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=6.782;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.553;QD=20.92;ReadPosRankSum=2.387;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1686,186,0 chrII 397849 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.85;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1482,165,0 chrII 397984 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.07;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1357,147,0 chrII 398292 . G A 884 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.22;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:917,99,0 chrII 398415 . T A 772 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.08;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:805,84,0 chrII 399103 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.74;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1534,162,0 chrII 399535 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.19;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1453,156,0 chrII 399796 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.70;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2138,234,0 chrII 399856 . A G 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.106;QD=18.77;ReadPosRankSum=1.649;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1610,180,0 chrII 399955 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=24.08;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1622,177,0 chrII 399991 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=19.36;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1466,165,0 chrII 400827 . T C 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.683;QD=20.70;ReadPosRankSum=1.683;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1482,171,0 chrII 400907 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.91;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1387,147,0 chrII 401604 . C G 1753 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.94;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1786,198,0 chrII 401612 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=15.84;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1807,195,0 chrII 402720 . A G 1777 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.90;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1810,204,0 chrII 402876 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.90;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1155,123,0 chrII 403281 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.80;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1687,183,0 chrII 403324 . T C 2190 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2223,240,0 chrII 403621 . C G 1644 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.34;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1677,180,0 chrII 404101 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.63;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1091,114,0 chrII 404406 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.61;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1819,195,0 chrII 404586 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=17.35;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1803,192,0 chrII 404589 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=16.90;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1774,189,0 chrII 404600 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.44;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1891,210,0 chrII 404673 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2750;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.25;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2463,273,0 chrII 404760 . T A 2006 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.57;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2039,225,0 chrII 405577 . T A 935 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.70;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:968,105,0 chrII 405578 . A C 920 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.40;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:953,105,0 chrII 405625 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=23.44;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:947,99,0 chrII 405662 . A T 883 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=19.20;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:916,96,0 chrII 405666 . C A 1004 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=18.25;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1037,117,0 chrII 405695 . A C 1298 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=19.09;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1331,144,0 chrII 405713 . T C 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-1.495;QD=13.62;ReadPosRankSum=1.685;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1027,114,0 chrII 405716 . A T 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=72;Dels=0.00;FS=9.596;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;MQRankSum=-1.184;QD=15.11;ReadPosRankSum=2.903;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1121,117,0 chrII 405772 . C G 2422 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=19.69;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2455,285,0 chrII 405845 . T A 2042 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.27;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2075,231,0 chrII 406051 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=1;QD=14.15;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:995,111,0 chrII 406260 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.64;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1664,174,0 chrII 406293 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.50;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1452,165,0 chrII 406379 . A G 608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=0.983;QD=16.43;ReadPosRankSum=1.639;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:641,75,0 chrII 406787 . T G 2870 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.25;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2903,324,0 chrII 407562 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.12;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1723,186,0 chrII 407563 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.86;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1721,192,0 chrII 407836 . A G 1038 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.59;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1071,120,0 chrII 407916 . T G 779 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.12;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:812,93,0 chrII 408073 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.49;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2099,222,0 chrII 408107 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.99;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2132,231,0 chrII 408191 . G T 1556 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.51;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1589,165,0 chrII 408615 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.40;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2186,231,0 chrII 408644 . T G 1561 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.04;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1594,180,0 chrII 408652 . G C 1356 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.32;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1389,150,0 chrII 408801 . T C 739 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.80;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:84:772,84,0 chrII 408987 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.47;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1441,153,0 chrII 409149 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.48;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1202,132,0 chrII 409209 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.28;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1514,159,0 chrII 409314 . C G 1249 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.57;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1282,135,0 chrII 409364 . A G 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=45;Dels=0.00;FS=3.212;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.339;QD=19.51;ReadPosRankSum=1.654;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:911,105,0 chrII 410546 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.75;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1838,201,0 chrII 410699 . G T 2278 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2888;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.94;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2311,252,0 chrII 410850 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.35;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1559,165,0 chrII 410985 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=99;Dels=0.00;FS=5.707;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.526;QD=12.17;ReadPosRankSum=2.864;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:3,93:99:99:1238,141,0 chrII 411003 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=14.71;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1784,189,0 chrII 411152 . T A 1852 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.58;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1885,198,0 chrII 411167 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.35;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1593,177,0 chrII 411233 . T C 1410 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.20;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1443,162,0 chrII 411506 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.72;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2312,249,0 chrII 412313 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1533,162,0 chrII 412403 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,159,0 chrII 412642 . A G 2146 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2179,237,0 chrII 414714 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.59;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1722,186,0 chrII 414898 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.81;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1887,198,0 chrII 414912 . A G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.293;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-0.040;QD=19.19;ReadPosRankSum=1.692;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1683,186,0 chrII 414926 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.619;QD=18.58;ReadPosRankSum=1.650;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1594,177,0 chrII 414950 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.64;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1487,168,0 chrII 415547 . T C 787 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=13.57;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:820,96,0 chrII 415550 . T C 788 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=13.59;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:821,90,0 chrII 415575 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=13.97;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:969,105,0 chrII 415599 . C G 1047 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=12.93;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1080,123,0 chrII 415607 . T C 1018 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=13.22;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1051,114,0 chrII 415693 . T C 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=77;Dels=0.00;FS=6.812;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=0.385;QD=16.69;ReadPosRankSum=1.684;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:2,71:77:99:1318,150,0 chrII 415733 . T C 649 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=14.75;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:682,81,0 chrII 415782 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;DP=45;Dels=0.00;FS=42.124;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=47.93;MQ0=0;MQRankSum=-0.838;QD=0.93;ReadPosRankSum=-1.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,21:45:72:72,0,152 chrII 415846 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.73;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1397,147,0 chrII 415869 . A C 1271 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.54;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1304,144,0 chrII 415916 . G T 891 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.96;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:924,102,0 chrII 415997 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.68;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1359,150,0 chrII 416243 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.30;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2375,264,0 chrII 416376 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.608;QD=20.01;ReadPosRankSum=1.691;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1734,195,0 chrII 416426 . A C 2198 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2231,246,0 chrII 416852 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.98;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1184,132,0 chrII 416935 . C A 1278 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.61;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1311,144,0 chrII 417154 . C T 870 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=24.17;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:903,96,0 chrII 417162 . G A 801 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=27.8394;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=21.65;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:834,93,0 chrII 417214 . T C 155.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=8.16;SB=-1.111e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:188,21,0 chrII 417239 . A G 207.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=9.41;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:240,27,0 chrII 417502 . C G 374 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=9.84;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:45:407,45,0 chrII 417692 . T C 878 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=21.95;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:911,102,0 chrII 417694 . T C 814 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=22.00;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:96:847,96,0 chrII 417699 . G A 802 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=24.30;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:835,90,0 chrII 417762 . A C 258 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=21.50;SB=-1.549e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:33:291,33,0 chrII 417795 . A G 238 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=14.88;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:271,30,0 chrII 417797 . T C 349 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=18.37;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:42:382,42,0 chrII 417889 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=16.03;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:626,69,0 chrII 417917 . G C 462 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=14.44;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:495,54,0 chrII 417944 . T A 333 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;QD=9.79;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:39:366,39,0 chrII 417950 . C T 296 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=9.55;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:329,36,0 chrII 417952 . T G 323 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=10.42;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:356,39,0 chrII 417959 . C T 324 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=9.82;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:357,39,0 chrII 417968 . T C 422 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.82;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:455,51,0 chrII 417969 . T A 412 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.56;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:445,48,0 chrII 417978 . A G 396 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.15;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:429,48,0 chrII 417980 . T C 412 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.56;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:445,48,0 chrII 418007 . G A 399 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.50;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:45:432,45,0 chrII 418042 . G C 304 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;QD=8.44;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:39:337,39,0 chrII 418045 . T C 304 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=8.69;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:337,39,0 chrII 418065 . G A 208.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=9.46;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:241,27,0 chrII 418082 . A G 258 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=11.22;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:291,33,0 chrII 418148 . A C 628 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.62;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:661,72,0 chrII 418150 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.66;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:694,75,0 chrII 418183 . A T 1138 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.88;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1171,123,0 chrII 418255 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.87;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1245,132,0 chrII 418383 . C A 388 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=20.42;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:45:421,45,0 chrII 418404 . T G 405 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=19.29;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:48:438,48,0 chrII 418437 . A G 417 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=17.37;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:450,51,0 chrII 418478 . G T 642 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.35;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:675,72,0 chrII 418505 . T A 679 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.97;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:712,75,0 chrII 418557 . A G 812 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=16.57;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:845,93,0 chrII 419139 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.43;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1490,156,0 chrII 419215 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.19;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1474,159,0 chrII 419913 . C G 1569 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.20;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1602,177,0 chrII 419931 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.65;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1212,135,0 chrII 420047 . A G 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.202;QD=20.57;ReadPosRankSum=2.325;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1658,183,0 chrII 420411 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2617,279,0 chrII 420720 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=17.8265;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.15;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2542,282,0 chrII 420753 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.58;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2383,267,0 chrII 420885 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.50;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1698,189,0 chrII 421030 . G C 1189 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1222,138,0 chrII 421116 . C A 1654 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.98;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1687,177,0 chrII 421574 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.11;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1785,189,0 chrII 422148 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.05;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.58;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1247,135,0 chrII 422164 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.34;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1463,162,0 chrII 422583 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.56;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2146,234,0 chrII 422622 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.794;QD=22.95;ReadPosRankSum=1.660;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2236,255,0 chrII 423225 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.10;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1025,114,0 chrII 423264 . A G 982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=54;Dels=0.00;FS=5.563;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.668;QD=18.19;ReadPosRankSum=-0.257;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1015,111,0 chrII 423518 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.38;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:973,108,0 chrII 423550 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.93;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:973,102,0 chrII 423561 . G A 883 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=18.79;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:916,96,0 chrII 423575 . T C 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.761;QD=15.68;ReadPosRankSum=2.338;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:81:723,81,0 chrII 423698 . G T 1883 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.15;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1916,204,0 chrII 424154 . A G 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.466;QD=22.89;ReadPosRankSum=1.699;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2414,264,0 chrII 424205 . A T 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.407;QD=21.34;ReadPosRankSum=1.696;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2124,234,0 chrII 424367 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2184,231,0 chrII 424490 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1895,210,0 chrII 424607 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=18.2010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1773,195,0 chrII 424811 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.39;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1399,156,0 chrII 425449 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.24;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1861,207,0 chrII 425500 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.36;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1845,210,0 chrII 425596 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.64;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1684,180,0 chrII 425780 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1890,210,0 chrII 425844 . T A 1573 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.26;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1606,174,0 chrII 425891 . T A 581 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.03;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:614,66,0 chrII 425982 . A T 525 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=13.46;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:558,57,0 chrII 426165 . A G 1674 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.62;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1707,183,0 chrII 426289 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.23;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1172,123,0 chrII 426299 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.89;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1224,132,0 chrII 426400 . G T 1107 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.42;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1140,123,0 chrII 426519 . A G 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.563;QD=18.41;ReadPosRankSum=1.690;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1561,171,0 chrII 426608 . A G 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.170;QD=20.11;ReadPosRankSum=1.639;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1521,168,0 chrII 426669 . C A 1456 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.16;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1489,156,0 chrII 426992 . A C 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.7988;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.684;QD=20.72;ReadPosRankSum=0.770;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1525,171,0 chrII 427812 . A G 770 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=22.00;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:803,93,0 chrII 427869 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.82;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1669,177,0 chrII 427998 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=18.83;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1803,189,0 chrII 428040 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=13.34;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1247,135,0 chrII 428055 . A T 1264 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-1.732;QD=12.51;ReadPosRankSum=1.698;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1297,135,0 chrII 428058 . A G 1004 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;MQRankSum=-1.614;QD=11.03;ReadPosRankSum=1.693;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,87:91:99:1037,117,0 chrII 428059 . G A 1057 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=11.62;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1090,117,0 chrII 428060 . C T 1075 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=91;Dels=0.00;FS=2.940;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;MQRankSum=-2.044;QD=11.81;ReadPosRankSum=2.314;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1108,117,0 chrII 428064 . G T 1147 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=10.92;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1180,126,0 chrII 428925 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.58;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1741,183,0 chrII 428982 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.58;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1286,135,0 chrII 429006 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.03;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1213,132,0 chrII 429131 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=17.61;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1266,135,0 chrII 429797 . T C 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.167;QD=20.99;ReadPosRankSum=1.619;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1964,219,0 chrII 430067 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=3.749;HaplotypeScore=12.7274;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.002;QD=21.82;ReadPosRankSum=1.591;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3241,354,0 chrII 430301 . A G 3459.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.17;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3459,372,0 chrII 431069 . T C 2044 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.77;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2077,228,0 chrII 431229 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.16;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1852,213,0 chrII 431273 . T C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.726;DP=94;Dels=0.00;FS=3.350;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.285;QD=20.81;ReadPosRankSum=1.695;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1989,194,0 chrII 431655 . A G 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.110;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.984;QD=23.01;ReadPosRankSum=1.653;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2058,225,0 chrII 431703 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1665;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.34;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2250,237,0 chrII 431781 . A G 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.164;DP=79;Dels=0.00;FS=5.112;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-2.448;QD=22.10;ReadPosRankSum=3.298;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:4,75:79:99:1779,195,0 chrII 431999 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.94;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1037,114,0 chrII 432022 . A T 979 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=15.79;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1012,108,0 chrII 432025 . T C 892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=6.705;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.515;QD=14.87;ReadPosRankSum=2.368;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:925,102,0 chrII 432278 . A C 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.34;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1865,201,0 chrII 432356 . A G 1852 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.86;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1885,210,0 chrII 432659 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.665;DP=129;Dels=0.00;FS=16.116;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.086;QD=19.57;ReadPosRankSum=3.714;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:5,123:129:99:2557,282,0 chrII 432767 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.45;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2017,219,0 chrII 432821 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.74;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2383,255,0 chrII 432848 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.93;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,222,0 chrII 432851 . G T 2042 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.69;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2075,222,0 chrII 432974 . G T 1649 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1682,186,0 chrII 433196 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.93;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2211,237,0 chrII 433232 . C A 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.72;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2001,213,0 chrII 433856 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0250;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.20;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1426,159,0 chrII 434430 . A T 1700 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.97;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1733,186,0 chrII 434484 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.71;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1600,186,0 chrII 435236 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.76;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2036,222,0 chrII 435650 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=16.99;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1273,135,0 chrII 435669 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.72;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1187,129,0 chrII 436119 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.49;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1516,168,0 chrII 436236 . T A 1371 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.48;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1404,150,0 chrII 436647 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1470,156,0 chrII 437154 . T C 1671 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.42;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1704,183,0 chrII 437295 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.98;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1651,183,0 chrII 437307 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.10;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1581,177,0 chrII 437754 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.16;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1324,144,0 chrII 438100 . A T 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=64;Dels=0.00;FS=6.111;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.164;QD=20.67;ReadPosRankSum=2.887;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1356,144,0 chrII 438190 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.027;QD=23.15;ReadPosRankSum=1.572;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1538,168,0 chrII 438300 . A C 1346 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.79;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1379,153,0 chrII 438582 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1840,204,0 chrII 438954 . T G 1500 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1533,171,0 chrII 439191 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.64;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1233,135,0 chrII 440992 . G T 1397 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1430,153,0 chrII 442031 . G C 1962 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1995,228,0 chrII 442249 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.19;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2468,264,0 chrII 443543 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1870,204,0 chrII 443759 . G C 3452.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.48;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3452,387,0 chrII 444181 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.47;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1396,150,0 chrII 444205 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.76;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1290,141,0 chrII 444343 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=16.48;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1137,126,0 chrII 444358 . T A 1016 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.87;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1049,117,0 chrII 444564 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.69;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1226,132,0 chrII 444664 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.96;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1531,162,0 chrII 444774 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.44;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1873,204,0 chrII 444941 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1763,183,0 chrII 445482 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.3148;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.37;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1593,177,0 chrII 445521 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.58;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1535,162,0 chrII 445593 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.16;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1086,120,0 chrII 445614 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.76;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1120,126,0 chrII 445731 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.18;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1818,192,0 chrII 445764 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.35;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1761,189,0 chrII 445794 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.05;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1216,132,0 chrII 446007 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.37;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1785,198,0 chrII 446028 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.07;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1739,192,0 chrII 446412 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.96;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1512,159,0 chrII 446547 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2526;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.90;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1943,207,0 chrII 446643 . G A 2949 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.7436;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.48;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:2982,321,0 chrII 447264 . T C 1182 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.38;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1215,138,0 chrII 447300 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.81;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:964,102,0 chrII 447318 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.19;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:906,102,0 chrII 447536 . G T 2189 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.11;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2222,240,0 chrII 447634 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.59;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1307,141,0 chrII 447726 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.52;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1538,168,0 chrII 447876 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1890,204,0 chrII 447938 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.72;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1451,159,0 chrII 448135 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2401,267,0 chrII 448230 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.08;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1645,189,0 chrII 449152 . T A 2751 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.6419;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.93;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2784,303,0 chrII 449416 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.69;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1313,144,0 chrII 449588 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.44;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2434,270,0 chrII 449888 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3558;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1843,210,0 chrII 450832 . A T 1919 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.56;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1952,210,0 chrII 450938 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.51;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1539,168,0 chrII 451124 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.74;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1652,177,0 chrII 451343 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.51;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1883,204,0 chrII 451373 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.45;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1829,192,0 chrII 451532 . T C 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=81;Dels=0.00;FS=3.048;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.867;QD=18.95;ReadPosRankSum=2.298;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1568,177,0 chrII 452218 . A G 869 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:902,99,0 chrII 452365 . T C 717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.578;QD=17.07;ReadPosRankSum=1.650;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:84:750,84,0 chrII 452408 . C T 362 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=18.8652;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=10.06;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:395,42,0 chrII 452891 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3799;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.98;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2627,276,0 chrII 453044 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=18.57;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1909,201,0 chrII 453048 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.12;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1700,186,0 chrII 453417 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.49;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1447,153,0 chrII 453426 . T G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.680;QD=18.67;ReadPosRankSum=1.680;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1265,141,0 chrII 453575 . C A 1367 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=19.53;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1400,147,0 chrII 453576 . T A 1361 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=74;Dels=0.00;FS=5.367;HaplotypeScore=3.5767;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.255;QD=18.39;ReadPosRankSum=3.239;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1394,147,0 chrII 453581 . G A 1165 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=13.87;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1198,132,0 chrII 453654 . T C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.212;HaplotypeScore=79.8701;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-0.551;QD=17.30;ReadPosRankSum=1.693;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1555,171,0 chrII 453655 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=79.8701;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.61;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1565,171,0 chrII 454122 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.250;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.471;QD=19.39;ReadPosRankSum=1.695;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1836,207,0 chrII 454207 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.059;DP=78;Dels=0.00;FS=17.325;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.593;QD=19.86;ReadPosRankSum=3.338;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:4,72:78:99:1582,183,0 chrII 454272 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.78;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1576,171,0 chrII 454336 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.884;QD=19.74;ReadPosRankSum=1.591;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1968,216,0 chrII 454467 . T G 1484 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.55;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1517,168,0 chrII 454470 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.80;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1676,177,0 chrII 454965 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.49;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1537,165,0 chrII 455178 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.54;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2340,246,0 chrII 455204 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.56;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1863,201,0 chrII 455272 . A G 189.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;DP=103;Dels=0.00;FS=15.640;HaplotypeScore=9.6356;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=0;MQRankSum=-2.091;QD=1.84;ReadPosRankSum=-2.603;SB=-3.850e+02 GT:AD:DP:GQ:PL 0/1:58,45:103:99:219,0,908 chrII 455916 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.11;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2152,237,0 chrII 456431 . C G 2401 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.70;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2434,264,0 chrII 457014 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.31;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1495,162,0 chrII 457048 . A G 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.462;QD=18.79;ReadPosRankSum=1.675;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1179,132,0 chrII 457101 . A G 770 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.50;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:93:803,93,0 chrII 457215 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=21.57;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1435,153,0 chrII 457818 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.77;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2460,258,0 chrII 458104 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=17.2632;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.96;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2138,228,0 chrII 458748 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.220;QD=19.90;ReadPosRankSum=1.653;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1784,195,0 chrII 459048 . T C 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=6.773;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.717;QD=19.36;ReadPosRankSum=2.369;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1795,198,0 chrII 459552 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1549,165,0 chrII 460385 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.55;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1122,120,0 chrII 460459 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.25;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1414,147,0 chrII 460470 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.92;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1282,141,0 chrII 460520 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.89;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1110,117,0 chrII 460561 . A G 1385 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=21.31;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1418,156,0 chrII 460566 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=20.91;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1392,153,0 chrII 460760 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.84;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2454,261,0 chrII 460981 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.91;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2270,240,0 chrII 460988 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.409;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.486;QD=19.20;ReadPosRankSum=1.702;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2222,252,0 chrII 461012 . T C 2564 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.13;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2597,294,0 chrII 461298 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.06;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1415,159,0 chrII 461622 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.76;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1772,198,0 chrII 461718 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1329,147,0 chrII 461852 . C G 2189 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2222,237,0 chrII 461887 . G C 1768 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.32;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1801,207,0 chrII 461966 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.37;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1744,189,0 chrII 462229 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.86;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2410,258,0 chrII 462389 . C T 897 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.86;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:930,99,0 chrII 462587 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.2227;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.61;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1558,165,0 chrII 463107 . A T 1565 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.5803;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.06;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1598,171,0 chrII 463393 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.0110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1700,183,0 chrII 463432 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1697,186,0 chrII 464046 . T C 1148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;DP=142;Dels=0.00;FS=17.986;HaplotypeScore=70.4091;MLEAC=1;MLEAF=0.500;MQ=54.43;MQ0=1;MQRankSum=1.874;QD=8.08;ReadPosRankSum=1.262;SB=-6.680e+02 GT:AD:DP:GQ:PL 0/1:68,72:142:99:1178,0,525 chrII 464064 . T C 696.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.541;DP=131;Dels=0.00;FS=5.432;HaplotypeScore=69.8663;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=2;MQRankSum=2.087;QD=5.31;ReadPosRankSum=0.171;SB=-3.500e+02 GT:AD:DP:GQ:PL 0/1:73,57:131:99:726,0,697 chrII 464073 . T C 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;DP=127;Dels=0.00;FS=13.865;HaplotypeScore=104.3672;MLEAC=1;MLEAF=0.500;MQ=53.42;MQ0=2;MQRankSum=-1.102;QD=0.67;ReadPosRankSum=-3.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,25:127:99:115,0,1312 chrII 464079 . T C 966.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.756;DP=128;Dels=0.03;FS=2.441;HaplotypeScore=100.4885;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=2;MQRankSum=1.936;QD=7.55;ReadPosRankSum=4.793;SB=-6.240e+02 GT:AD:DP:GQ:PL 0/1:49,75:124:99:996,0,449 chrII 464082 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.399;DP=124;Dels=0.04;FS=0.000;HaplotypeScore=102.1957;MLEAC=1;MLEAF=0.500;MQ=54.08;MQ0=2;MQRankSum=0.329;QD=0.17;ReadPosRankSum=-3.629;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:102,17:119:51:51,0,1276 chrII 464478 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9071;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=17.09;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1537,165,0 chrII 464499 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4345;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=14.78;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1230,132,0 chrII 464916 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=106;Dels=0.00;FS=9.285;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.933;QD=21.31;ReadPosRankSum=2.876;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2292,249,0 chrII 465012 . T C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=14.4001;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.799;QD=21.48;ReadPosRankSum=1.666;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2288,249,0 chrII 465156 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.99;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2092,222,0 chrII 465417 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.34;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2167,237,0 chrII 465471 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.17;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1769,198,0 chrII 465657 . G C 1098 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.33;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1131,126,0 chrII 466698 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.4474;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.07;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1858,204,0 chrII 466738 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.71;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1661,177,0 chrII 468345 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=17.90;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1662,183,0 chrII 468870 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.58;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2194,234,0 chrII 469086 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2426;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.25;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2285,249,0 chrII 469119 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.8004;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=16.31;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:1941,225,0 chrII 469122 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1763;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=16.28;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1987,222,0 chrII 469344 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=16.42;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1166,129,0 chrII 469374 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.77;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1197,126,0 chrII 469760 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1415,153,0 chrII 470300 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=95;Dels=0.00;FS=5.914;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.670;QD=19.84;ReadPosRankSum=2.905;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1918,213,0 chrII 470537 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.42;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1585,168,0 chrII 470609 . A G 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=95;Dels=0.00;FS=3.405;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.619;QD=20.42;ReadPosRankSum=1.657;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1973,231,0 chrII 472187 . A G 1644 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1677,183,0 chrII 472853 . T C 2403 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.27;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2436,270,0 chrII 473060 . T C 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;MQRankSum=-0.306;QD=12.27;ReadPosRankSum=1.651;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1088,123,0 chrII 473078 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=10.47;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:90:839,90,0 chrII 473093 . A C 544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=7.56;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:66:577,66,0 chrII 473105 . G A 549 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=7.62;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:66:582,66,0 chrII 473108 . G C 599 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;MQRankSum=-0.595;QD=8.56;ReadPosRankSum=1.422;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,66:70:69:632,69,0 chrII 473109 . C T 607 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=8.67;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:69:640,69,0 chrII 473605 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.06;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1377,150,0 chrII 473996 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=86;Dels=0.00;FS=5.870;HaplotypeScore=14.0438;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.893;QD=19.97;ReadPosRankSum=2.917;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:3,82:86:99:1750,192,0 chrII 474031 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.73;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1493,168,0 chrII 474261 . T A 1960 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1993,213,0 chrII 474308 . T A 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.732;QD=23.13;ReadPosRankSum=1.694;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2138,225,0 chrII 475232 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.20;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1991,210,0 chrII 475292 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=15.94;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1181,132,0 chrII 475310 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=12.98;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1097,120,0 chrII 475550 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2781,300,0 chrII 475856 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.35;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2723,306,0 chrII 476954 . C T 3564.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.01;FS=0.000;HaplotypeScore=6.0670;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.60;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3564,393,0 chrII 476966 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.01;FS=0.000;HaplotypeScore=4.5037;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.08;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3665,385,0 chrII 477332 . A G 796 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=16.94;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:829,93,0 chrII 477343 . A G 708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.315;QD=13.88;ReadPosRankSum=2.305;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:84:741,84,0 chrII 479201 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=25.23;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1017,108,0 chrII 479301 . A C 348 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=13.38;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:42:381,42,0 chrII 479752 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.91;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1506,159,0 chrII 480335 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.46;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1063,114,0 chrII 480510 . C A 1202 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1235,129,0 chrII 480609 . A G 676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.311;QD=17.33;ReadPosRankSum=1.555;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:78:709,78,0 chrII 480963 . A G 1921 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9316;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1954,213,0 chrII 481140 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.99;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1849,198,0 chrII 481261 . C T 3688.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.08;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,163:167:99:3688,405,0 chrII 481347 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.11;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3119,348,0 chrII 481477 . T C 2129 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.41;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2162,240,0 chrII 481670 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.1819;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.35;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3005,324,0 chrII 482984 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=15.52;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1073,120,0 chrII 483468 . G T 1634 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.79;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1667,180,0 chrII 483653 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.01;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1860,204,0 chrII 483702 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.58;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1815,192,0 chrII 483709 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.44;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1958,204,0 chrII 483785 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.49;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2262,249,0 chrII 483944 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.31;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1536,168,0 chrII 484110 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.390;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.689;QD=17.81;ReadPosRankSum=1.689;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1511,147,0 chrII 484558 . C T 809 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=12.45;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:842,93,0 chrII 484574 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=16.49;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1171,123,0 chrII 484617 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=17.60;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1476,162,0 chrII 484649 . T A 1891 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.12;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1924,216,0 chrII 484753 . C A 1978 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.83;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2011,213,0 chrII 486841 . C A 1497 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.79;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1530,165,0 chrII 486878 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.4715;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.55;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1795,195,0 chrII 486968 . A T 331.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=105;Dels=0.00;FS=6.135;HaplotypeScore=54.7714;MLEAC=1;MLEAF=0.500;MQ=45.62;MQ0=0;MQRankSum=0.266;QD=3.15;ReadPosRankSum=-5.636;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:80,25:105:99:361,0,479 chrII 486976 . G T 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=102;Dels=0.05;FS=7.519;HaplotypeScore=26.9205;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=0;MQRankSum=-2.657;QD=0.47;ReadPosRankSum=-4.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,10:97:78:78,0,812 chrII 486977 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DP=105;Dels=0.00;FS=11.281;HaplotypeScore=25.3431;MLEAC=1;MLEAF=0.500;MQ=46.47;MQ0=0;MQRankSum=-3.766;QD=0.30;ReadPosRankSum=-4.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,9:105:61:61,0,922 chrII 487507 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.33;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3104,330,0 chrII 488579 . A G 592 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:69:625,69,0 chrII 489253 . A G 2041 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2074,237,0 chrII 489433 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.8938;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.95;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1928,210,0 chrII 489778 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.65;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1851,198,0 chrII 490532 . T C 3376.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=11.8495;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.286;QD=18.55;ReadPosRankSum=-1.256;SB=-1.817e+03 GT:AD:DP:GQ:PL 1/1:1,181:182:99:3376,384,0 chrII 490619 . A C 2265 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.57;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2298,252,0 chrII 491265 . C T 840 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.53;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:873,93,0 chrII 491320 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6398;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.45;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1084,120,0 chrII 492025 . A C 2052 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.32;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2085,228,0 chrII 493122 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.78;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1319,144,0 chrII 493123 . T C 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.94;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1369,153,0 chrII 493536 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.05;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1981,222,0 chrII 493755 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.271;QD=18.83;ReadPosRankSum=1.678;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1238,141,0 chrII 493858 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.11;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1265,132,0 chrII 493879 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.49;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1187,132,0 chrII 493942 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.34;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1464,153,0 chrII 494193 . G A 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.621;QD=18.27;ReadPosRankSum=1.621;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1202,132,0 chrII 494992 . A G 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.400;QD=23.06;ReadPosRankSum=1.679;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1555,171,0 chrII 495085 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1683,183,0 chrII 495615 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.23;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1860,210,0 chrII 495627 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.44;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2200,234,0 chrII 495979 . C G 1571 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.48;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1604,186,0 chrII 496005 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=2.818;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.484;QD=19.17;ReadPosRankSum=2.391;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1643,177,0 chrII 496273 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.38;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1480,165,0 chrII 496369 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.75;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1278,141,0 chrII 496540 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.46;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1785,192,0 chrII 496918 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.94;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1897,201,0 chrII 497449 . T C 2180 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.80;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2213,243,0 chrII 497477 . A T 2013 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=10.1441;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.12;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2046,219,0 chrII 498697 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.06;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1076,117,0 chrII 498812 . T C 664 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.47;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:697,78,0 chrII 499010 . G A 567 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.81;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:63:600,63,0 chrII 499037 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.53;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:626,66,0 chrII 499049 . T A 558 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=15.94;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:591,63,0 chrII 499070 . A G 438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.743;QD=12.51;ReadPosRankSum=1.634;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:54:471,54,0 chrII 499985 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.15;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1685,180,0 chrII 500417 . A C 1480 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.22;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1513,168,0 chrII 500498 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.90;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1559,171,0 chrII 501201 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.94;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2424,261,0 chrII 501422 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.05;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2391,264,0 chrII 501490 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.23;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2156,237,0 chrII 501576 . A T 2547 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.37;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2580,273,0 chrII 501702 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.37;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1703,183,0 chrII 502305 . A T 2083 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.89;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2116,225,0 chrII 502627 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.84;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1769,192,0 chrII 502676 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.09;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1426,150,0 chrII 502677 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.07;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1388,147,0 chrII 502959 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.12;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1265,141,0 chrII 503196 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1279,135,0 chrII 503310 . G C 1774 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.17;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1807,201,0 chrII 503337 . A G 1371 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.53;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1404,156,0 chrII 503634 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.27;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2215,243,0 chrII 503886 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.13;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1986,213,0 chrII 504423 . A T 300 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.75;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:36:333,36,0 chrII 504592 . A T 661 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.44;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:694,75,0 chrII 504631 . G T 947 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.02;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:980,105,0 chrII 504973 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.40;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1686,180,0 chrII 504994 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=1.469;QD=16.94;ReadPosRankSum=1.694;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1625,177,0 chrII 505129 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.06;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1947,207,0 chrII 505225 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=16.68;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1451,153,0 chrII 506054 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.39;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1789,189,0 chrII 506164 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.925;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.115;QD=18.47;ReadPosRankSum=1.258;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1418,162,0 chrII 506237 . G C 2134 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.40;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2167,246,0 chrII 509573 . T A 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.611;QD=19.07;ReadPosRankSum=1.630;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1349,147,0 chrII 510159 . A C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.019;QD=19.01;ReadPosRankSum=1.579;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1326,150,0 chrII 511436 . G T 1974 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.14;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2007,213,0 chrII 511752 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=17.74;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1470,156,0 chrII 511793 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.47;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1863,201,0 chrII 511832 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3144;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.12;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1924,216,0 chrII 511883 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.60;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1796,195,0 chrII 511946 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.03;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1806,192,0 chrII 512167 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.56;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2243,246,0 chrII 512222 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8736;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.84;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1638,183,0 chrII 512285 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.777;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.270;QD=20.45;ReadPosRankSum=1.699;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2180,246,0 chrII 512345 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.48;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2163,231,0 chrII 512977 . G A 2526 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.59;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2559,270,0 chrII 512993 . G A 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.824;QD=20.72;ReadPosRankSum=-1.194;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2188,231,0 chrII 513067 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.39;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1533,168,0 chrII 513202 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.19;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1516,168,0 chrII 513451 . G T 917 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.51;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:950,105,0 chrII 513533 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=6.9015;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.808;QD=20.62;ReadPosRankSum=-1.155;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1270,141,0 chrII 513972 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.76;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1317,141,0 chrII 513994 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.091;QD=19.78;ReadPosRankSum=1.668;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1101,123,0 chrII 514077 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.13;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1073,120,0 chrII 515316 . C G 1753 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8515;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.77;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1786,195,0 chrII 515542 . G T 1714 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1747,192,0 chrII 515888 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=75;Dels=0.00;FS=3.660;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.048;QD=20.85;ReadPosRankSum=1.684;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,71:75:99:1597,174,0 chrII 516182 . C A 1725 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.96;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1758,195,0 chrII 516245 . G T 2035 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2068,222,0 chrII 516344 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=5.588;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.600;QD=22.86;ReadPosRankSum=1.699;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2479,270,0 chrII 516753 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.698;QD=18.46;ReadPosRankSum=1.698;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1916,207,0 chrII 516986 . G A 2782 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8464;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.19;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2815,297,0 chrII 517631 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1341,147,0 chrII 518133 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.01;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1786,201,0 chrII 519668 . A C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=2.790;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.565;QD=21.37;ReadPosRankSum=2.363;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2512,279,0 chrII 519900 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.344;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.816;QD=21.51;ReadPosRankSum=1.653;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1926,225,0 chrII 520147 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.0776;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.72;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2618,285,0 chrII 521820 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.96;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1755,186,0 chrII 522849 . C A 1649 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.61;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1682,180,0 chrII 523940 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.78;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2132,243,0 chrII 524108 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1443,153,0 chrII 524659 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1338,141,0 chrII 525042 . A G 2720 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.29;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2753,318,0 chrII 525342 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=86;Dels=0.00;FS=8.139;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.559;QD=19.34;ReadPosRankSum=2.393;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1696,195,0 chrII 525363 . C A 1699 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.88;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1732,186,0 chrII 525674 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.65;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1635,174,0 chrII 526248 . G A 1004 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.31;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1037,114,0 chrII 526512 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=14.61;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1158,132,0 chrII 526527 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=15.17;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1080,117,0 chrII 526594 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.07;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1139,126,0 chrII 526608 . T A 1133 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.12;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1166,123,0 chrII 526673 . G A 969 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1002,105,0 chrII 527380 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.61;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1778,189,0 chrII 527412 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.74;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2007,222,0 chrII 527451 . A C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2896;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.139;QD=19.95;ReadPosRankSum=1.697;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2028,222,0 chrII 527493 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.50;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1748,189,0 chrII 527516 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=15.85;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1301,138,0 chrII 527527 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=16.22;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1314,141,0 chrII 527528 . A G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.433;QD=15.11;ReadPosRankSum=1.689;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1272,141,0 chrII 527601 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=17.75;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1666,180,0 chrII 528069 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1620,180,0 chrII 528108 . T C 1093 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.18;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1126,123,0 chrII 528206 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=74;Dels=0.00;FS=13.946;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.518;QD=18.23;ReadPosRankSum=3.263;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1382,153,0 chrII 528370 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.94;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1832,195,0 chrII 528511 . C G 849 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=14.64;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:58:99:882,99,0 chrII 528775 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.04;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1055,114,0 chrII 529079 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.56;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1310,138,0 chrII 529298 . A G 1398 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.87;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1431,159,0 chrII 529327 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.01;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1554,162,0 chrII 529415 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1098,120,0 chrII 529840 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1287,135,0 chrII 530461 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.03;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1253,135,0 chrII 531982 . G T 1191 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1224,132,0 chrII 532114 . T C 1670 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.57;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1703,189,0 chrII 532473 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.69;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1547,171,0 chrII 532520 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.64;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2089,222,0 chrII 532567 . T A 1570 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.7789;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.69;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1603,171,0 chrII 532597 . T C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=78;Dels=0.00;FS=2.770;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=1.769;QD=16.82;ReadPosRankSum=2.385;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,74:78:99:1345,147,0 chrII 532643 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=16.52;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1338,141,0 chrII 532658 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=15.29;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1073,120,0 chrII 532659 . A G 1038 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=15.26;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1071,117,0 chrII 532675 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=12.92;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1002,108,0 chrII 532685 . C T 891 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.21;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:924,99,0 chrII 532687 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.47;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:870,96,0 chrII 532698 . G T 655 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=0;QD=9.63;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:72:688,72,0 chrII 532699 . C T 668 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=9.54;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:75:701,75,0 chrII 532726 . T A 728 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=12.13;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:81:761,81,0 chrII 532976 . A G 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=1.274;QD=15.30;ReadPosRankSum=2.254;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1012,111,0 chrII 533002 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=18.33;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1133,123,0 chrII 533392 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.41;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1531,165,0 chrII 534637 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.50;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:99:1188,126,0 chrII 534745 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1489,168,0 chrII 534867 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.032;QD=22.54;ReadPosRankSum=1.695;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2174,237,0 chrII 534922 . T C 1285 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.77;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1318,144,0 chrII 535517 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.26;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1475,156,0 chrII 535549 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.79;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1188,132,0 chrII 535736 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.20;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1773,192,0 chrII 535983 . T C 2067 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.71;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2100,231,0 chrII 536426 . C A 2300 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2414;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.72;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2333,246,0 chrII 536637 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.91;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1645,189,0 chrII 536661 . T C 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.872;DP=99;Dels=0.00;FS=2.874;HaplotypeScore=6.5237;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.595;QD=17.54;ReadPosRankSum=-0.063;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:1769,178,0 chrII 536700 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.77;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2117,231,0 chrII 536784 . C G 2548 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1147;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.16;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2581,285,0 chrII 536859 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.17;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2211,240,0 chrII 536917 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.84;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1933,207,0 chrII 537039 . A G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.856;QD=19.15;ReadPosRankSum=1.613;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1718,189,0 chrII 537174 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.64;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1416,150,0 chrII 537210 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.89;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1338,141,0 chrII 537267 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.00;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1436,156,0 chrII 537351 . C T 557 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=16.4760;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=13.26;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:63:590,63,0 chrII 537480 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.66;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1075,120,0 chrII 537744 . T C 1093 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.77;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1126,123,0 chrII 537804 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.87;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1657,174,0 chrII 538047 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.40;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1892,213,0 chrII 538103 . A G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=66;Dels=0.00;FS=3.078;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-2.032;QD=20.59;ReadPosRankSum=2.374;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:99:1392,153,0 chrII 538121 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.80;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1515,171,0 chrII 538733 . C A 1448 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1481,159,0 chrII 538919 . A C 1712 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.6810;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.88;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1745,192,0 chrII 538941 . A G 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.187;QD=20.11;ReadPosRankSum=1.693;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1823,207,0 chrII 538968 . T A 1537 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.49;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1570,168,0 chrII 539056 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1079,114,0 chrII 539253 . G A 828 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=13.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:861,102,0 chrII 539286 . A G 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=9.138;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.384;QD=18.40;ReadPosRankSum=2.333;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:90:806,90,0 chrII 539483 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.55;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1022,111,0 chrII 539637 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.91;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1457,159,0 chrII 539810 . A T 1149 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.89;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1182,126,0 chrII 539825 . G T 1219 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.66;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1252,135,0 chrII 539861 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=15.85;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:889,99,0 chrII 540238 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.95;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1262,141,0 chrII 540379 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.34;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1701,189,0 chrII 540838 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.18;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2137,228,0 chrII 541145 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.34;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1368,147,0 chrII 541344 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=24.32;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1322,144,0 chrII 541358 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.00;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1229,132,0 chrII 541559 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.65;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2133,234,0 chrII 541560 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.26;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2206,234,0 chrII 541582 . A G 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.7776;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-1.717;QD=16.79;ReadPosRankSum=2.939;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1947,216,0 chrII 542052 . T G 1268 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.51;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1301,144,0 chrII 542121 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:971,102,0 chrII 542175 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.210;QD=20.43;ReadPosRankSum=1.627;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1402,156,0 chrII 542283 . T C 1101 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.32;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1134,123,0 chrII 542367 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.18;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1475,156,0 chrII 542402 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1204,126,0 chrII 542481 . A C 1395 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1428,156,0 chrII 543006 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.84;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1860,198,0 chrII 543299 . A G 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.836;QD=21.72;ReadPosRankSum=1.691;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1879,204,0 chrII 544299 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.06;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1555,168,0 chrII 544305 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.67;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1484,165,0 chrII 544499 . C A 1728 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.42;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1761,192,0 chrII 544514 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.60;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1797,192,0 chrII 545201 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.98;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2285,246,0 chrII 546015 . A C 1282 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.03;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1315,147,0 chrII 546224 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0666;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.15;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1376,153,0 chrII 546316 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.965;DP=57;Dels=0.00;FS=24.307;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.001;QD=20.54;ReadPosRankSum=3.913;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:6,51:57:99:1204,132,0 chrII 546330 . C A 1127 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.54;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1160,123,0 chrII 546732 . C G 2680 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.33;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2713,312,0 chrII 546933 . A G 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.601;QD=22.92;ReadPosRankSum=1.601;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2463,270,0 chrII 547137 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.592;QD=19.63;ReadPosRankSum=1.688;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1584,174,0 chrII 547149 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.49;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1572,177,0 chrII 547380 . T G 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.318;QD=21.73;ReadPosRankSum=1.697;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2184,240,0 chrII 547403 . A C 2148 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=22.14;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2181,234,0 chrII 547422 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.75;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1946,207,0 chrII 547427 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.57;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1685,183,0 chrII 547480 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.35;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1648,186,0 chrII 547516 . G C 1899 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.34;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1932,213,0 chrII 547535 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.87;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1543,168,0 chrII 547559 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.93;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1593,168,0 chrII 548249 . C T 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.2236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.057;QD=18.48;ReadPosRankSum=1.047;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1733,186,0 chrII 548425 . T C 751 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.30;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:784,87,0 chrII 548443 . T C 568 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.32;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:601,66,0 chrII 549221 . A G 790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.660;QD=18.81;ReadPosRankSum=1.650;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:823,90,0 chrII 549229 . G A 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.377;QD=17.13;ReadPosRankSum=-1.205;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:87:821,87,0 chrII 549252 . G A 567 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=14.54;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:600,63,0 chrII 549466 . C A 1056 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.12;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1089,117,0 chrII 549535 . A C 1572 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.82;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1605,174,0 chrII 549576 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.90;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1384,150,0 chrII 549769 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6407;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.21;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2957,312,0 chrII 550124 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.4900;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.91;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2397,270,0 chrII 550142 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.35;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2061,237,0 chrII 550220 . T C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.477;QD=19.80;ReadPosRankSum=1.682;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1399,156,0 chrII 550241 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.63;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1655,174,0 chrII 550268 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.15;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1757,186,0 chrII 550679 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.79;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1508,162,0 chrII 550847 . A C 1670 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4818;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.27;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1703,186,0 chrII 552237 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.78;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:745,81,0 chrII 552348 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.17;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:867,90,0 chrII 552889 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1943,210,0 chrII 553018 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1814,192,0 chrII 553393 . A G 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.686;QD=20.72;ReadPosRankSum=1.667;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1131,123,0 chrII 553854 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.40;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2326,255,0 chrII 554047 . C A 1974 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2007,222,0 chrII 554441 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.65;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1527,168,0 chrII 554537 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1504,162,0 chrII 555369 . T C 541 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=11.04;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:574,66,0 chrII 556272 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.32;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1707,186,0 chrII 556992 . T C 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.538;QD=23.03;ReadPosRankSum=1.673;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1369,150,0 chrII 557245 . C A 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.64;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1349,144,0 chrII 557651 . T A 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.866;QD=20.98;ReadPosRankSum=1.535;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1879,201,0 chrII 557670 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.887;QD=19.78;ReadPosRankSum=1.690;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1655,189,0 chrII 557763 . G C 1023 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8411;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.30;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1056,117,0 chrII 558133 . G A 591 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.55;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:624,66,0 chrII 558396 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:622,69,0 chrII 558471 . A G 414 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.82;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:447,48,0 chrII 558499 . T C 494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.226;QD=21.48;ReadPosRankSum=1.583;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:57:527,57,0 chrII 558576 . T C 1142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=54;Dels=0.00;FS=3.017;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.564;QD=21.15;ReadPosRankSum=2.357;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:1175,129,0 chrII 559922 . C G 597 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=15.8557;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.59;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:69:630,69,0 chrII 561569 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.54;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1704,183,0 chrII 562814 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.42;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1468,159,0 chrII 562897 . T A 906 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.59;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:939,99,0 chrII 562911 . A T 929 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.20;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:962,102,0 chrII 562914 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:937,105,0 chrII 563275 . A G 846 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.26;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:879,102,0 chrII 564041 . T A 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.00;FS=8.707;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.004;QD=20.11;ReadPosRankSum=3.368;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:2044,216,0 chrII 564235 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2342,249,0 chrII 565493 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1213;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.97;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1983,210,0 chrII 565627 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.51;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1530,165,0 chrII 565863 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.11;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1553,171,0 chrII 565886 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.18;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1563,165,0 chrII 565949 . A G 1043 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.67;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1076,117,0 chrII 566056 . T C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=2.955;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.362;QD=20.66;ReadPosRankSum=2.365;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1231,138,0 chrII 566552 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.69;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1293,141,0 chrII 566556 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.27;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1184,129,0 chrII 566766 . T A 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.552;QD=19.81;ReadPosRankSum=1.696;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1935,213,0 chrII 567042 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1963,216,0 chrII 567480 . G A 2990 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.71;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3023,318,0 chrII 567576 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.79;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1558,174,0 chrII 567613 . A C 1205 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1238,135,0 chrII 567682 . G C 1378 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.53;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1411,150,0 chrII 567711 . A T 1926 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.40;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1959,210,0 chrII 568357 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.26;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1836,201,0 chrII 568406 . T C 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.857;QD=21.10;ReadPosRankSum=1.694;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1953,222,0 chrII 568465 . G T 1066 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=15.91;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1099,120,0 chrII 568762 . T G 1817 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.00;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1850,201,0 chrII 568819 . T C 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=10.318;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.891;QD=13.29;ReadPosRankSum=2.892;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:897,102,0 chrII 568820 . T G 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.105;QD=13.39;ReadPosRankSum=1.680;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:917,102,0 chrII 568986 . G T 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.51;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1428,153,0 chrII 569874 . C G 1098 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1131,132,0 chrII 570264 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.58;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1462,165,0 chrII 570929 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.67;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1676,177,0 chrII 571050 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.81;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1974,210,0 chrII 571089 . C T 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.114;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.495;QD=21.19;ReadPosRankSum=1.626;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2110,231,0 chrII 571218 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.05;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1296,141,0 chrII 571411 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.09;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2411,264,0 chrII 571717 . T G 2145 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.62;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2178,249,0 chrII 571870 . T G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.133;QD=18.48;ReadPosRankSum=1.093;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1253,135,0 chrII 572787 . C T 1327 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1360,144,0 chrII 573446 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1500,159,0 chrII 573792 . A T 1896 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.96;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1929,207,0 chrII 573826 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.28;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2082,225,0 chrII 573907 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=69;Dels=0.00;FS=7.993;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.940;QD=23.75;ReadPosRankSum=2.376;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,65:69:99:1672,180,0 chrII 574962 . G T 1618 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1651,177,0 chrII 575184 . A T 1219 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.32;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1252,132,0 chrII 575619 . C A 2247 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5193;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.24;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2280,255,0 chrII 575934 . A G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.192;QD=16.38;ReadPosRankSum=1.677;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1065,120,0 chrII 576055 . T C 302 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=6.43;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:39:335,39,0 chrII 576061 . A G 444 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4827;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=8.54;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:51:477,51,0 chrII 576069 . A C 481 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.4925;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=8.75;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:514,57,0 chrII 576700 . A G 1156 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.02;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1189,132,0 chrII 576971 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,107:113:99:2430,261,0 chrII 577712 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.06;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2097,225,0 chrII 578867 . A G 1047 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.28;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1080,120,0 chrII 578933 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1058,117,0 chrII 579038 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=6.506;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=-2.298;QD=0.24;ReadPosRankSum=2.374;SB=-8.248e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:6:47,6,0 chrII 579131 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1546,168,0 chrII 579644 . A G 945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.781;QD=18.53;ReadPosRankSum=1.664;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:978,105,0 chrII 579647 . T C 903 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.43;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:936,105,0 chrII 579957 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=16.52;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:991,108,0 chrII 580557 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1194;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.48;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2341,255,0 chrII 580575 . T C 2609 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.24;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2642,288,0 chrII 580722 . A T 1982 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.24;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2015,219,0 chrII 580746 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.87;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2536,270,0 chrII 580809 . A T 3349.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.4655;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.096;QD=22.63;ReadPosRankSum=1.709;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3349,360,0 chrII 580868 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.3204;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.30;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2738,297,0 chrII 581091 . A C 2069 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.11;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2102,237,0 chrII 581109 . A G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.322;QD=21.52;ReadPosRankSum=1.701;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2486,276,0 chrII 581181 . C A 2129 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.28;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2162,243,0 chrII 581460 . A G 1022 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6855;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.32;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1055,117,0 chrII 581465 . A G 1006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.948;QD=17.05;ReadPosRankSum=2.367;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1039,114,0 chrII 582285 . T C 2601 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.65;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2634,291,0 chrII 582470 . A T 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.856;QD=23.45;ReadPosRankSum=1.692;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2073,222,0 chrII 583262 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.00;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1104,117,0 chrII 583442 . T C 582 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:66:615,66,0 chrII 583514 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.40;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:889,99,0 chrII 583825 . T G 2245 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5586;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.45;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2278,255,0 chrII 584397 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.60;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2474,264,0 chrII 584923 . A G 1204 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1237,135,0 chrII 585074 . G C 1660 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.38;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1693,186,0 chrII 585769 . T C 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.488;DP=82;Dels=0.00;FS=12.573;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.988;QD=15.28;ReadPosRankSum=3.721;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1286,144,0 chrII 585808 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.67;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1429,153,0 chrII 585814 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=15.85;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1380,150,0 chrII 586221 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.64;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1114,117,0 chrII 586574 . C G 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.18;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1405,165,0 chrII 587372 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.22;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1388,153,0 chrII 587405 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.27;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1458,156,0 chrII 587480 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1224,135,0 chrII 587830 . G C 1098 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.26;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1131,126,0 chrII 587865 . T A 1241 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.34;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1274,135,0 chrII 588089 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.58;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1630,186,0 chrII 588182 . T C 923 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.78;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:956,108,0 chrII 589164 . T C 1504 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.17;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1537,177,0 chrII 589661 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.2005;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.311;QD=23.11;ReadPosRankSum=2.374;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1535,168,0 chrII 589871 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.50;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:894,102,0 chrII 589872 . G T 922 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.95;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:955,102,0 chrII 589894 . A G 654 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=13.35;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:687,75,0 chrII 589895 . T C 644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-0.247;QD=12.88;ReadPosRankSum=1.662;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:75:677,75,0 chrII 589941 . G A 736 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=13.38;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:769,84,0 chrII 590654 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.708;QD=20.70;ReadPosRankSum=0.854;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1503,147,0 chrII 590742 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.73;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1961,207,0 chrII 590779 . A C 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.12;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1723,195,0 chrII 590898 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.19;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1792,186,0 chrII 590982 . T C 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.241;QD=21.00;ReadPosRankSum=1.636;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1545,171,0 chrII 591204 . T C 1642 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1675,183,0 chrII 591378 . C A 938 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9639;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:971,108,0 chrII 592600 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.3378;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.82;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1837,204,0 chrII 592604 . G C 1931 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5491;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.22;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1964,216,0 chrII 592641 . A G 1949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.199;QD=21.42;ReadPosRankSum=1.656;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1982,216,0 chrII 592744 . T A 1561 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=71.5043;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.81;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1594,168,0 chrII 592905 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.81;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1538,168,0 chrII 593091 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.32;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1289,150,0 chrII 593127 . G T 1558 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.47;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1591,180,0 chrII 593154 . T C 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=96;Dels=0.00;FS=2.662;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.661;QD=15.37;ReadPosRankSum=2.113;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1509,165,0 chrII 593157 . A T 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=96;Dels=0.00;FS=2.605;HaplotypeScore=6.1190;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.190;QD=15.49;ReadPosRankSum=2.927;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1520,168,0 chrII 593215 . T A 2654 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.75;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2687,285,0 chrII 593396 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.68;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1052,117,0 chrII 593719 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1478,159,0 chrII 594208 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2136,231,0 chrII 594492 . A G 1152 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.95;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1185,129,0 chrII 594526 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.78;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1446,156,0 chrII 594781 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1444,159,0 chrII 595246 . C T 747 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.22;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:780,84,0 chrII 595346 . G T 1109 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.9555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1142,129,0 chrII 595497 . A G 950 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.27;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:983,108,0 chrII 595508 . A G 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=45.7190;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=0.124;QD=16.23;ReadPosRankSum=1.670;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:942,105,0 chrII 595927 . T C 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=7.068;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.186;QD=15.57;ReadPosRankSum=1.670;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:905,99,0 chrII 596654 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.00;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2091,234,0 chrII 596858 . T C 987 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.45;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1020,120,0 chrII 596960 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1434,150,0 chrII 597100 . G A 505 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.02;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:538,57,0 chrII 597391 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.45;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1500,168,0 chrII 597615 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.53;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1922,204,0 chrII 597806 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1423,150,0 chrII 598137 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.99;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2672,282,0 chrII 598243 . T C 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.033;QD=18.56;ReadPosRankSum=1.667;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1035,114,0 chrII 598254 . T G 907 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.20;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:940,105,0 chrII 598635 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.11;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1443,153,0 chrII 599098 . T C 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=0.385;QD=18.93;ReadPosRankSum=1.540;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1055,117,0 chrII 599099 . T G 958 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.42;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:991,117,0 chrII 599687 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.65;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1822,195,0 chrII 599749 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.72;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1250,135,0 chrII 600505 . T A 625 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.53;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:72:658,72,0 chrII 600570 . C T 800 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.86;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:833,90,0 chrII 601087 . A G 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=5.601;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.280;QD=18.81;ReadPosRankSum=1.582;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1331,153,0 chrII 601097 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.09;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1274,138,0 chrII 601142 . A G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=4.847;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.956;QD=19.83;ReadPosRankSum=1.613;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1203,132,0 chrII 601415 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.57;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1500,159,0 chrII 601451 . T A 1459 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.46;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1492,156,0 chrII 602361 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.4425;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.36;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1208,129,0 chrII 603707 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.87;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1354,144,0 chrII 603837 . A T 1541 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.02;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1574,174,0 chrII 604051 . A T 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=4.494;HaplotypeScore=7.5686;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.687;QD=21.93;ReadPosRankSum=1.368;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1700,180,0 chrII 604281 . G T 1354 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.9090;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=15.93;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1387,153,0 chrII 605039 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.64;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1056,111,0 chrII 605930 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2891;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.783;QD=23.26;ReadPosRankSum=1.685;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3396,372,0 chrII 606590 . C G 2286 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.37;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2319,258,0 chrII 607035 . T C 1040 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1073,117,0 chrII 607269 . T C 1321 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.220;QD=24.02;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1354,144,0 chrII 607303 . A G 1785 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1818,198,0 chrII 607539 . A C 1427 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.68;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1460,162,0 chrII 607542 . A T 1423 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.33;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1456,162,0 chrII 607558 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.23;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1530,168,0 chrII 607602 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.34;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1812,192,0 chrII 607669 . T A 2218 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2251,252,0 chrII 607705 . A G 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=75;Dels=0.00;FS=8.421;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.422;QD=22.07;ReadPosRankSum=2.382;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:2,71:75:99:1688,195,0 chrII 607867 . C A 849 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=14.89;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:882,96,0 chrII 607960 . A T 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.403;QD=19.42;ReadPosRankSum=2.264;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2344,241,0 chrII 609547 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.46;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1836,201,0 chrII 610045 . A G 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.612;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.306;QD=21.66;ReadPosRankSum=1.691;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1896,216,0 chrII 610067 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.99;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1832,192,0 chrII 610295 . A G 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=7.736;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.903;QD=21.17;ReadPosRankSum=2.348;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1049,114,0 chrII 610313 . T G 927 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.60;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:960,105,0 chrII 610376 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.42;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1378,153,0 chrII 610437 . A T 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.495;QD=22.08;ReadPosRankSum=1.691;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1888,204,0 chrII 610487 . T A 2011 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.95;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2044,216,0 chrII 610492 . T G 1781 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.95;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1814,198,0 chrII 610606 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.51;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2487,270,0 chrII 610797 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.37;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1209,132,0 chrII 611052 . G T 1619 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1652,174,0 chrII 611232 . A C 1904 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.22;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1937,216,0 chrII 611660 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1056;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.40;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1938,207,0 chrII 612932 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.04;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2358,264,0 chrII 613145 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.21;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2631,279,0 chrII 613175 . A G 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=128;Dels=0.00;FS=6.552;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.242;QD=20.46;ReadPosRankSum=1.714;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,125:128:99:2652,294,0 chrII 613535 . A G 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4909;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.701;QD=19.72;ReadPosRankSum=1.671;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2261,258,0 chrII 614131 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.31;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1595,171,0 chrII 614308 . G T 1601 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.27;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1634,177,0 chrII 614359 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.74;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1720,192,0 chrII 614365 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.54;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1813,192,0 chrII 614384 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.96;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1847,195,0 chrII 614507 . C T 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.280;QD=21.52;ReadPosRankSum=0.602;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2013,213,0 chrII 614520 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.81;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2014,234,0 chrII 614550 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.92;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1755,186,0 chrII 614804 . G T 1589 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.62;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1622,171,0 chrII 614824 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=3.068;HaplotypeScore=56.0804;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=0.424;QD=18.07;ReadPosRankSum=2.376;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1244,138,0 chrII 615654 . G C 1811 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2481;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1844,201,0 chrII 617650 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.87;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1131,117,0 chrII 618062 . A G 805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.330;QD=19.17;ReadPosRankSum=1.485;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:96:838,96,0 chrII 618167 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1285,141,0 chrII 618804 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=77.2530;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=17.68;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1465,159,0 chrII 618844 . A T 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0843;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-0.151;QD=15.67;ReadPosRankSum=1.544;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1475,156,0 chrII 618892 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=8.7693;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=11.60;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:93:822,93,0 chrII 618907 . A G 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.420;QD=13.77;ReadPosRankSum=1.680;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:942,102,0 chrII 618908 . T C 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=1.260;QD=13.61;ReadPosRankSum=1.680;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:931,102,0 chrII 618941 . T G 634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.995;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.700;QD=13.49;ReadPosRankSum=0.848;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:53:667,53,0 chrII 619502 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.89;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1370,150,0 chrII 619507 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.15;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1362,144,0 chrII 619747 . A G 1379 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.61;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1412,153,0 chrII 620302 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1527,165,0 chrII 620443 . G T 1902 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.36;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1935,204,0 chrII 620572 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.60;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1567,174,0 chrII 621285 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.74;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2231,243,0 chrII 621963 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.91;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1448,159,0 chrII 622140 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1086,120,0 chrII 622567 . G C 633 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.42;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:666,75,0 chrII 622849 . A T 1474 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.98;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1507,165,0 chrII 622971 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.36;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1112,123,0 chrII 622981 . A C 1070 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.98;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1103,123,0 chrII 623061 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=13.36;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:955,105,0 chrII 623818 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1928,213,0 chrII 624009 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.25;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2258,237,0 chrII 624219 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.97;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1711,180,0 chrII 624652 . C T 1116 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.58;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1149,123,0 chrII 624837 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9242;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.84;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1715,195,0 chrII 624870 . C G 1581 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1604;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.80;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1614,180,0 chrII 625298 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.06;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1597,177,0 chrII 626092 . A G 2095 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4551;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.22;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2128,231,0 chrII 626455 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.09;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1933,201,0 chrII 626578 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.69;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,276,0 chrII 627001 . T A 1468 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=15.78;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1501,168,0 chrII 627055 . A T 2410 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.17;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2443,270,0 chrII 627176 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.02;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2389,255,0 chrII 627259 . C G 1864 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=19.02;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1897,216,0 chrII 627664 . T C 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=74;Dels=0.00;FS=3.064;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.166;QD=21.04;ReadPosRankSum=2.349;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1590,174,0 chrII 628090 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.38;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1520,162,0 chrII 628269 . T C 428 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=9.95;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:54:461,54,0 chrII 628399 . C A 765 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.13;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:798,84,0 chrII 628413 . C T 688 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.50;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:721,78,0 chrII 628424 . C G 646 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.28;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:679,75,0 chrII 628807 . T C 491 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.64;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:524,60,0 chrII 628977 . G A 772 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:87:805,87,0 chrII 628998 . T G 735 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.27;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:87:768,87,0 chrII 629013 . G A 660 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.86;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:35:72:693,72,0 chrII 629145 . A G 1144 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:54:99:1177,138,0 chrII 629259 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.88;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1750,186,0 chrII 629581 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.521;QD=22.44;ReadPosRankSum=1.690;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1873,207,0 chrII 629636 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.77;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1753,189,0 chrII 629684 . C T 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=3.550;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.517;QD=20.59;ReadPosRankSum=1.192;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1680,180,0 chrII 629692 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=19.67;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1646,177,0 chrII 629701 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=18.73;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1475,162,0 chrII 629731 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.23;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1239,135,0 chrII 629782 . T C 1676 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.69;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1709,189,0 chrII 629839 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.28;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2291,246,0 chrII 630052 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.62;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1387,156,0 chrII 630091 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.921;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.843;QD=15.85;ReadPosRankSum=1.639;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1206,132,0 chrII 630094 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.88;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1149,132,0 chrII 630469 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.13;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1301,150,0 chrII 631243 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.82;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1341,144,0 chrII 631321 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=9.878;HaplotypeScore=6.7987;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.632;QD=21.11;ReadPosRankSum=2.357;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1722,189,0 chrII 631398 . G C 1204 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.8218;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.11;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1237,141,0 chrII 631668 . T C 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.578;QD=23.42;ReadPosRankSum=1.655;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1087,117,0 chrII 632170 . G A 820 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.00;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:853,90,0 chrII 632180 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.40;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:910,96,0 chrII 633409 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.55;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1421,150,0 chrII 633468 . T G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.347;QD=22.13;ReadPosRankSum=1.655;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2025,225,0 chrII 634225 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.45;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1712,180,0 chrII 634368 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1699,192,0 chrII 635127 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.38;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1441,159,0 chrII 636267 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.07;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3009,321,0 chrII 636372 . T C 2880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.501;QD=23.80;ReadPosRankSum=1.675;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2913,318,0 chrII 636702 . T C 3546.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=13.1994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3546,393,0 chrII 636994 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0363;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.037;QD=18.40;ReadPosRankSum=2.277;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1873,207,0 chrII 637178 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.41;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2431,258,0 chrII 637414 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2417,273,0 chrII 637624 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.91;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1788,195,0 chrII 637861 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.99;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2493,273,0 chrII 638086 . A G 2482 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.33;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2515,270,0 chrII 638530 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.8581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1920,207,0 chrII 638716 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1392,153,0 chrII 639238 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.53;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1227,132,0 chrII 639544 . A T 1422 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.10;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1455,156,0 chrII 639700 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.68;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1594,168,0 chrII 639745 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.88;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1932,207,0 chrII 639793 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.0229;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.91;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1805,204,0 chrII 639832 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.97;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1747,192,0 chrII 640153 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.84;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1909,207,0 chrII 641071 . T G 1320 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=17.60;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1353,153,0 chrII 641302 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1396,147,0 chrII 641433 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.67;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1788,195,0 chrII 641467 . A G 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=5.035;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.562;QD=21.56;ReadPosRankSum=1.630;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2254,249,0 chrII 641605 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.83;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2133,228,0 chrII 642355 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.8537;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.76;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1316,150,0 chrII 642483 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.57;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1176,126,0 chrII 642492 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1077,126,0 chrII 642773 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.16;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1726,192,0 chrII 643176 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.08;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1579,177,0 chrII 643219 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7490;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.86;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2037,219,0 chrII 643282 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=93.2312;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.59;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2365,255,0 chrII 643328 . G A 1262 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.12;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1295,135,0 chrII 643432 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.55;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1837,198,0 chrII 646794 . A T 1834 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.2357;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.83;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1867,198,0 chrII 646843 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.70;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1964,213,0 chrII 646983 . A T 1878 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1911,213,0 chrII 647549 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.21;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1704,183,0 chrII 648179 . A C 1538 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.66;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1571,171,0 chrII 648386 . G T 1987 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2679;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.38;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2020,216,0 chrII 649196 . T C 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.621;QD=19.00;ReadPosRankSum=1.676;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1211,135,0 chrII 649369 . A C 2288 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6115;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.43;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2321,261,0 chrII 649517 . A T 2359 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2392,258,0 chrII 650263 . T C 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.016;DP=68;Dels=0.00;FS=4.820;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.508;QD=0.48;ReadPosRankSum=3.146;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:6,62:68:9:65,9,0 chrII 650411 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.45;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1587,174,0 chrII 650619 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.41;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1321,147,0 chrII 650970 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.17;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1196,135,0 chrII 651616 . T A 853 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.23;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:886,99,0 chrII 652362 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.29;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1481,159,0 chrII 652467 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.62;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1734,192,0 chrII 652587 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=96;Dels=0.00;FS=2.821;HaplotypeScore=11.6672;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.847;QD=20.07;ReadPosRankSum=2.266;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:2,92:96:99:1960,222,0 chrII 652686 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=102;Dels=0.00;FS=5.459;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.119;QD=19.26;ReadPosRankSum=2.852;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:1998,219,0 chrII 652830 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4655;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.96;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2187,237,0 chrII 653275 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=20.16;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1021,114,0 chrII 653440 . C A 1677 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.28;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1710,186,0 chrII 654025 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.72;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1250,141,0 chrII 654301 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.93;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1155,126,0 chrII 654348 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.18;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1113,123,0 chrII 654360 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.49;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1037,111,0 chrII 654465 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.84;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:886,96,0 chrII 654500 . G A 615 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.62;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:648,69,0 chrII 654834 . C A 946 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.57;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:979,108,0 chrII 655272 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.49;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1144,120,0 chrII 655451 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.65;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2729,297,0 chrII 656242 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7464;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.20;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1793,198,0 chrII 656829 . C G 1180 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.67;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1213,135,0 chrII 657139 . T C 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.505;QD=22.52;ReadPosRankSum=1.619;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:63:99:1452,165,0 chrII 657465 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.162;QD=19.52;ReadPosRankSum=1.651;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1692,186,0 chrII 657582 . T A 1645 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.82;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1678,183,0 chrII 658797 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1399,153,0 chrII 659388 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.402;QD=22.29;ReadPosRankSum=2.345;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2151,237,0 chrII 660819 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.9826;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.96;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1948,207,0 chrII 660870 . T A 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=82;Dels=0.00;FS=13.658;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=4.115;QD=14.37;ReadPosRankSum=-0.227;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:12,70:82:41:1211,41,0 chrII 660921 . G A 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DP=70;Dels=0.00;FS=3.701;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.579;QD=18.19;ReadPosRankSum=1.121;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1306,123,0 chrII 661314 . T C 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=3.736;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.266;QD=17.65;ReadPosRankSum=1.688;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1445,162,0 chrII 661374 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.56;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1779,198,0 chrII 662094 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.68;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1470,168,0 chrII 662272 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1257,135,0 chrII 662444 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.79;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:976,105,0 chrII 662749 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.54;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:997,111,0 chrII 662810 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.51;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1711,183,0 chrII 662924 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.21;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2212,237,0 chrII 662962 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.38;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2184,234,0 chrII 663412 . A G 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.853;QD=20.65;ReadPosRankSum=1.629;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1437,159,0 chrII 663478 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.88;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1105,120,0 chrII 663723 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.89;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1788,192,0 chrII 664165 . T C 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.975;QD=22.70;ReadPosRankSum=1.674;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2734,312,0 chrII 664714 . A T 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=3.029;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-1.127;QD=20.70;ReadPosRankSum=2.379;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1461,156,0 chrII 664724 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.66;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1500,162,0 chrII 665456 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.688;QD=22.29;ReadPosRankSum=1.643;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1794,201,0 chrII 665576 . C A 1731 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1764,186,0 chrII 665795 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=8.0200;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.525;QD=19.65;ReadPosRankSum=-0.262;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1330,147,0 chrII 666708 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.50;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1698,189,0 chrII 667779 . A G 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.135;QD=19.71;ReadPosRankSum=2.384;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1511,171,0 chrII 668585 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.95;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1206,132,0 chrII 668741 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.46;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1337,150,0 chrII 668780 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=15.83;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1078,114,0 chrII 668789 . A G 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-1.280;QD=13.43;ReadPosRankSum=1.682;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:960,108,0 chrII 668867 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.55;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1665,183,0 chrII 668968 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.44;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1963,207,0 chrII 669257 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.95;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1343,141,0 chrII 669262 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.23;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1552,162,0 chrII 669356 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.17;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1567,168,0 chrII 669668 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.10;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1848,195,0 chrII 670091 . C G 1416 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.94;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1449,159,0 chrII 670302 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.2075;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.07;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1928,213,0 chrII 671376 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.792;QD=21.28;ReadPosRankSum=1.683;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1544,171,0 chrII 672003 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.28;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1650,180,0 chrII 672013 . T C 1790 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9411;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.34;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1823,198,0 chrII 672200 . A C 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.266;QD=18.92;ReadPosRankSum=1.666;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1036,114,0 chrII 672354 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.81;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1261,132,0 chrII 672487 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.21;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1032,114,0 chrII 672540 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.63;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1136,123,0 chrII 672553 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9416;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.02;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1234,135,0 chrII 673311 . G A 446 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=13.94;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:51:479,51,0 chrII 673342 . T A 403 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=11.51;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:48:436,48,0 chrII 673390 . G T 586 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=12.74;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:66:619,66,0 chrII 673645 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.04;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1439,156,0 chrII 674097 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:956,102,0 chrII 674175 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.57;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1198,129,0 chrII 674295 . T A 2350 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4440;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.36;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2383,258,0 chrII 674379 . A G 1908 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.97;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1941,222,0 chrII 676110 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.68;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1117,126,0 chrII 676125 . T C 1093 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.62;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1126,123,0 chrII 676341 . A C 2172 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.87;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2205,240,0 chrII 676864 . A T 2539 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.39;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2572,270,0 chrII 677266 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.04;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2221,249,0 chrII 678426 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.488;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.566;QD=19.27;ReadPosRankSum=1.699;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2037,228,0 chrII 678595 . T A 1701 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.84;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1734,192,0 chrII 678648 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8210;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.20;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1934,207,0 chrII 678711 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.65;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1873,198,0 chrII 678799 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.31;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2130,225,0 chrII 679276 . A C 722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.452;QD=15.70;ReadPosRankSum=1.657;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:87:755,87,0 chrII 679385 . A C 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.642;QD=15.90;ReadPosRankSum=2.260;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:860,99,0 chrII 679517 . T G 1652 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.81;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1685,183,0 chrII 679593 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.44;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1534,168,0 chrII 680332 . A T 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=58;Dels=0.00;FS=6.795;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.019;QD=14.29;ReadPosRankSum=2.448;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:75:862,75,0 chrII 680550 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=14.94;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:840,99,0 chrII 680726 . A G 666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=39;Dels=0.00;FS=10.274;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.948;QD=17.08;ReadPosRankSum=2.321;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:2,36:39:81:699,81,0 chrII 680743 . C T 763 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.62;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:796,87,0 chrII 681516 . A G 1331 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.13;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1364,153,0 chrII 681557 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=27.19;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1447,153,0 chrII 682145 . G T 1022 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.04;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1055,114,0 chrII 682332 . T C 956 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.38;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:989,108,0 chrII 682449 . T C 1089 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.17;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1122,123,0 chrII 682728 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.63;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1309,141,0 chrII 682779 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.51;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1773,186,0 chrII 683415 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2133,228,0 chrII 684585 . G T 1129 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.51;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1162,126,0 chrII 685165 . A G 653 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.66;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:686,75,0 chrII 685213 . C T 632 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.59;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:72:665,72,0 chrII 685287 . G A 743 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.12;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:84:776,84,0 chrII 685290 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.00;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:84:793,84,0 chrII 685306 . T C 711 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.22;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:84:744,84,0 chrII 685381 . A T 1883 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0536;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.42;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1916,210,0 chrII 685391 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.83;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1699,201,0 chrII 685432 . G A 649 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=12.25;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:682,78,0 chrII 686563 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.21;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2451,267,0 chrII 686624 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.46;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1956,210,0 chrII 688796 . A G 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=3.502;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.309;QD=19.89;ReadPosRankSum=1.609;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1167,135,0 chrII 689309 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.16;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1376,150,0 chrII 691543 . G C 2368 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2401,264,0 chrII 692083 . C A 1790 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.19;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1823,192,0 chrII 693273 . T G 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.523;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.528;QD=21.29;ReadPosRankSum=0.102;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1502,174,0 chrII 694151 . T A 1756 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1789,192,0 chrII 696985 . A G 3611.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.167;HaplotypeScore=7.5981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.485;QD=23.30;ReadPosRankSum=1.710;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3611,396,0 chrII 697049 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=5.241;HaplotypeScore=10.5643;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.429;QD=23.22;ReadPosRankSum=0.696;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2750,303,0 chrII 697455 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1579,171,0 chrII 698277 . T C 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.796;QD=22.65;ReadPosRankSum=1.639;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:96:871,96,0 chrII 698648 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7249;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.62;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1995,219,0 chrII 698735 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.11;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2042,225,0 chrII 699344 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.40;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1767,198,0 chrII 699380 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.61;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1801,204,0 chrII 699461 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8819;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.02;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3048,324,0 chrII 699560 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.69;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2040,222,0 chrII 699737 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=14.82;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1263,144,0 chrII 699878 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=102;Dels=0.00;FS=5.563;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.188;QD=19.53;ReadPosRankSum=2.931;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2025,222,0 chrII 700005 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.05;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1517,162,0 chrII 700097 . T C 605 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:638,69,0 chrII 700109 . T A 496 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.53;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:529,57,0 chrII 700199 . A T 409 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=11.36;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:51:442,51,0 chrII 700246 . T C 661 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:34:78:694,78,0 chrII 700423 . T C 1680 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.450;QD=25.85;ReadPosRankSum=3.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,61:65:99:1713,183,0 chrII 700538 . C T 1534 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1567,168,0 chrII 701135 . T C 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.643;QD=21.50;ReadPosRankSum=1.704;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2721,297,0 chrII 701195 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2546,279,0 chrII 701303 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.88;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2024,216,0 chrII 701354 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.88;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2497,273,0 chrII 702004 . T C 432 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.00;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:54:465,54,0 chrII 702521 . T G 3788.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=162;Dels=0.00;FS=3.900;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.706;QD=23.38;ReadPosRankSum=1.689;SB=-1.723e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3788,408,0 chrII 702600 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.46;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3375,354,0 chrII 702673 . A G 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=4.523;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.340;QD=21.51;ReadPosRankSum=1.698;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2227,258,0 chrII 703015 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=5.939;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.294;QD=13.68;ReadPosRankSum=1.667;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1497,165,0 chrII 703042 . A G 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.454;QD=16.05;ReadPosRankSum=1.701;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:1879,207,0 chrII 703162 . T C 1722 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.80;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1755,195,0 chrII 703256 . C G 1144 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.07;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1177,135,0 chrII 703783 . C G 1369 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.25;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1402,153,0 chrII 703879 . T C 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.764;QD=18.29;ReadPosRankSum=1.681;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1277,144,0 chrII 703999 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.74;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1415,162,0 chrII 704219 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.58;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1587,174,0 chrII 704358 . G T 420 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;QD=22.11;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:453,48,0 chrII 704507 . A T 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=70;Dels=0.03;FS=6.491;HaplotypeScore=27.8308;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.903;QD=17.80;ReadPosRankSum=2.376;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1279,138,0 chrII 704528 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.93;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1305,138,0 chrII 704536 . C A 1155 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.62;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1188,135,0 chrII 704922 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.39;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1981,216,0 chrII 705302 . A C 1971 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2004,225,0 chrII 705344 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.46;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1807,192,0 chrII 705633 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=16.65;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1348,144,0 chrII 705963 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.67;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1272,144,0 chrII 706449 . A G 2054 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2087,231,0 chrII 706728 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.37;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1110,126,0 chrII 706983 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.19;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1252,138,0 chrII 707159 . A G 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=65;Dels=0.00;FS=5.971;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-1.892;QD=19.28;ReadPosRankSum=2.861;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1286,144,0 chrII 707160 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.40;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1360,144,0 chrII 707207 . A G 1023 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.05;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1056,117,0 chrII 707213 . A G 1017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=0.060;QD=16.67;ReadPosRankSum=1.673;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,57:61:99:1050,117,0 chrII 707578 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.87;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1155,126,0 chrII 708202 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.75;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1611,171,0 chrII 708750 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1373,147,0 chrII 708909 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1169,132,0 chrII 708952 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1327,144,0 chrII 709212 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.11;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1194,132,0 chrII 710109 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2825;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.45;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2007,225,0 chrII 710907 . A G 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.630;QD=20.43;ReadPosRankSum=0.000;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1422,140,0 chrII 711099 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=14.94;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1243,138,0 chrII 711159 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.66;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1468,159,0 chrII 711231 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.09;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1045,114,0 chrII 711439 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.98;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1191,135,0 chrII 711455 . T C 1132 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.26;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1165,132,0 chrII 711554 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.28;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1546,171,0 chrII 711722 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.46;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1650,174,0 chrII 711792 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.49;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1435,153,0 chrII 711804 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.68;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1601,177,0 chrII 711873 . C G 2378 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.82;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2411,261,0 chrII 712022 . C G 178.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DP=73;Dels=0.00;FS=148.914;HaplotypeScore=3.8124;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=1.595;QD=2.44;ReadPosRankSum=-6.314;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:50,22:73:99:208,0,546 chrII 712079 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.88;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1766,189,0 chrII 712082 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.32;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,183,0 chrII 712145 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.43;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1782,192,0 chrII 712159 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.80;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1612,174,0 chrII 712259 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.12;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2065,225,0 chrII 712456 . C A 2280 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=23.27;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2313,246,0 chrII 712466 . C A 2149 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=22.62;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2182,234,0 chrII 712622 . C A 1968 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.16;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2001,216,0 chrII 712877 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.19;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2767,294,0 chrII 713038 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.86;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2146,231,0 chrII 713316 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.4354;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.86;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1702,192,0 chrII 713781 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.34;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1445,153,0 chrII 714130 . G C 1963 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1996,222,0 chrII 715332 . A C 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.102;HaplotypeScore=5.8747;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.335;QD=18.81;ReadPosRankSum=1.624;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1858,204,0 chrII 715932 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.56;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1328,147,0 chrII 716118 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.59;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:934,102,0 chrII 716325 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.50;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:726,81,0 chrII 716328 . A G 675 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=15.70;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:78:708,78,0 chrII 716467 . C T 734 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=16.31;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:767,81,0 chrII 716483 . G A 595 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=11.67;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:628,69,0 chrII 716508 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=16.46;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:922,99,0 chrII 716738 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.30;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1361,144,0 chrII 716927 . T C 2961 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.69;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2994,333,0 chrII 717374 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.23;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2020,216,0 chrII 717439 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.13;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2357,249,0 chrII 718117 . G A 3273.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.72;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3273,354,0 chrII 718258 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.55;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1313,141,0 chrII 718330 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.02;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1944,222,0 chrII 718548 . T C 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=3.559;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.086;QD=19.07;ReadPosRankSum=1.674;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1196,132,0 chrII 718621 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.67;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:987,105,0 chrII 718633 . C A 920 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=15.08;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:953,102,0 chrII 718659 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=15.21;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1037,114,0 chrII 718785 . C A 1961 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1994,210,0 chrII 719221 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.93;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1268,144,0 chrII 719463 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1664,177,0 chrII 719899 . T C 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.052;QD=22.00;ReadPosRankSum=1.680;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1485,165,0 chrII 720010 . G T 1336 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.56;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1369,147,0 chrII 720011 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.99;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1328,150,0 chrII 720160 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.19;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1665,183,0 chrII 720178 . A G 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.146;QD=20.78;ReadPosRankSum=1.679;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1384,153,0 chrII 720340 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.34;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1355,150,0 chrII 720379 . A G 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4530;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.501;QD=17.71;ReadPosRankSum=1.641;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1397,159,0 chrII 720905 . A G 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.015;QD=20.43;ReadPosRankSum=1.673;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1259,135,0 chrII 720931 . C G 1791 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.35;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1824,210,0 chrII 721063 . A C 1714 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=16.17;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1747,192,0 chrII 721075 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3380;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=14.35;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1425,156,0 chrII 721077 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=14.70;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1415,156,0 chrII 721088 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=13.13;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1215,129,0 chrII 721115 . C A 895 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=74.1435;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=9.62;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:928,99,0 chrII 721141 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=12.04;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1117,123,0 chrII 721162 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=14.49;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1192,126,0 chrII 721566 . G A 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DP=113;Dels=0.00;FS=4.142;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.700;QD=18.43;ReadPosRankSum=0.620;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2116,214,0 chrII 721863 . T C 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=3.041;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.582;QD=20.20;ReadPosRankSum=2.380;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1447,162,0 chrII 721938 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.55;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1871,210,0 chrII 722432 . T A 1268 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1301,138,0 chrII 722533 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.61;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1898,201,0 chrII 722576 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.53;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1627,183,0 chrII 722589 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.45;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1620,174,0 chrII 723102 . G C 1870 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.80;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1903,219,0 chrII 723175 . G C 2149 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.93;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2182,237,0 chrII 723232 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.26;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1755,195,0 chrII 723360 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.17;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1889,201,0 chrII 723385 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.45;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1601,174,0 chrII 723393 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.76;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1508,165,0 chrII 723865 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.80;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1973,210,0 chrII 724096 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4422;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.11;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2052,225,0 chrII 724613 . T G 985 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1018,114,0 chrII 724784 . A G 828 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.90;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:861,93,0 chrII 724863 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1465,159,0 chrII 724953 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.31;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1589,168,0 chrII 725168 . A G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.094;HaplotypeScore=3.7997;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.922;QD=18.70;ReadPosRankSum=1.687;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1473,171,0 chrII 725223 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.81;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1529,171,0 chrII 725454 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1478,162,0 chrII 725631 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.22;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1667,192,0 chrII 725754 . C T 2662 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8272;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.18;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2695,294,0 chrII 726105 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.87;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1882,201,0 chrII 726249 . T G 2055 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2088,231,0 chrII 726888 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.69;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2833,300,0 chrII 726985 . C A 3145 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.83;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3178,333,0 chrII 727268 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.26;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1708,180,0 chrII 727326 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1985,219,0 chrII 727541 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1691,183,0 chrII 727581 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1590,180,0 chrII 727844 . G T 1746 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.04;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1779,189,0 chrII 728076 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5850;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.94;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2097,234,0 chrII 728116 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.59;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2188,234,0 chrII 728250 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.16;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1303,141,0 chrII 728314 . C T 700 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.07;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:733,81,0 chrII 728328 . C T 579 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=13.16;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:612,69,0 chrII 728335 . C T 687 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.36;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:720,75,0 chrII 728411 . C T 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.3972;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.054;QD=15.57;ReadPosRankSum=1.353;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1045,111,0 chrII 728414 . A T 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=0.000;QD=15.17;ReadPosRankSum=1.678;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1004,108,0 chrII 728435 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.24;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1237,132,0 chrII 728499 . C A 1224 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.49;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1257,141,0 chrII 728585 . G C 1602 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.65;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1635,180,0 chrII 728801 . A G 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.611;QD=20.91;ReadPosRankSum=1.611;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1225,135,0 chrII 728914 . C A 1607 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.96;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1640,171,0 chrII 728992 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1449,159,0 chrII 729547 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.4339;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.60;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,177,0 chrII 729640 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.75;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1776,186,0 chrII 730031 . T C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.386;QD=23.07;ReadPosRankSum=1.683;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1648,177,0 chrII 730059 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7395;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.49;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1832,198,0 chrII 730165 . T C 1331 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.48;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1364,150,0 chrII 730195 . T C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=8.062;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.513;QD=20.51;ReadPosRankSum=2.374;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1366,153,0 chrII 730234 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.81;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1669,183,0 chrII 730392 . C G 1393 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.62;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1426,162,0 chrII 730429 . G T 1193 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.57;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1226,132,0 chrII 730515 . T C 1124 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.48;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1157,126,0 chrII 730763 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.65;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1024,111,0 chrII 730801 . G A 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.667;QD=19.42;ReadPosRankSum=1.013;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1062,111,0 chrII 730949 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.39;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1735,198,0 chrII 730965 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.46;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1578,174,0 chrII 730981 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.11;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1426,153,0 chrII 731181 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=24.00;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1857,201,0 chrII 731212 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=25.47;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2096,219,0 chrII 731292 . T C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.605;QD=21.78;ReadPosRankSum=1.690;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1819,204,0 chrII 731473 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.06;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1297,147,0 chrII 731475 . A T 1357 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.54;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1390,147,0 chrII 731524 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=16.47;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1120,117,0 chrII 731539 . G T 1053 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=15.04;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1086,120,0 chrII 731541 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=16.66;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1199,126,0 chrII 731564 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=15.77;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1216,138,0 chrII 731596 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.70;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1604,177,0 chrII 731859 . A G 1166 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.59;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1199,132,0 chrII 731934 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.56;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2012,219,0 chrII 731970 . A T 1937 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.91;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1970,213,0 chrII 732123 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.97;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1564,168,0 chrII 732337 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.66;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1975,210,0 chrII 732408 . G T 1803 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.46;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1836,195,0 chrII 732447 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.764;QD=22.64;ReadPosRankSum=1.681;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1595,174,0 chrII 732464 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=22.54;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1588,168,0 chrII 732496 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.31;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1230,135,0 chrII 732514 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=32.7613;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.10;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:905,102,0 chrII 732591 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.99;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1607,189,0 chrII 732852 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.52;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1249,135,0 chrII 732930 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.35;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1315,141,0 chrII 733230 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.274;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.406;QD=19.06;ReadPosRankSum=1.691;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1672,192,0 chrII 733320 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.41;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1147,126,0 chrII 733332 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.69;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1059,117,0 chrII 733372 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.13;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1232,138,0 chrII 733422 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=14.81;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1129,123,0 chrII 733446 . A G 1019 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=12.90;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1052,120,0 chrII 733473 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=15.31;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1059,114,0 chrII 733476 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=14.70;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1062,114,0 chrII 733629 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.21;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1327,141,0 chrII 733794 . A C 1034 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.53;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1067,120,0 chrII 733809 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.11;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:991,114,0 chrII 733953 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1575,171,0 chrII 734046 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1520,162,0 chrII 734775 . G A 3405.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.5693;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.32;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3405,381,0 chrII 735096 . C T 3194 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.2854;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.18;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3227,348,0 chrII 735231 . C T 2829 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.2150;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.37;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2862,300,0 chrII 735240 . A T 2736 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.88;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2769,300,0 chrII 735363 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=16.32;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1404,150,0 chrII 735399 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.80;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1226,135,0 chrII 735582 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0926;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=16.77;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1827,204,0 chrII 736232 . A G 1312 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.22;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1345,156,0 chrII 736599 . A C 1845 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.50;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1878,207,0 chrII 736946 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.79;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1649,177,0 chrII 737232 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.727;QD=20.14;ReadPosRankSum=0.208;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2067,231,0 chrII 737329 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.92;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1790,198,0 chrII 737397 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1813,198,0 chrII 737484 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.32;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1557,168,0 chrII 737979 . G C 1264 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.18;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1297,147,0 chrII 738015 . T G 1434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.026;QD=21.40;ReadPosRankSum=1.681;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1467,159,0 chrII 738147 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.11;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2104,222,0 chrII 738213 . A C 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.178;QD=14.59;ReadPosRankSum=1.697;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1507,168,0 chrII 738886 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.83;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1380,144,0 chrII 738941 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9405;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.97;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2025,228,0 chrII 739091 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.22;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2580,273,0 chrII 739563 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.54;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1769,195,0 chrII 739698 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4132;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.23;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2644,291,0 chrII 739770 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.84;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1964,219,0 chrII 739813 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.91;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1826,207,0 chrII 739892 . T G 2156 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.00;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2189,243,0 chrII 740026 . T C 2528 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.57;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2561,282,0 chrII 740164 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.87;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1640,174,0 chrII 740168 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.638;QD=19.48;ReadPosRankSum=1.687;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1533,168,0 chrII 740350 . T C 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.702;QD=23.34;ReadPosRankSum=1.701;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2624,288,0 chrII 740362 . A G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.795;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-1.521;QD=22.37;ReadPosRankSum=1.612;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2628,282,0 chrII 741097 . C T 2754 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.86;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2787,303,0 chrII 741197 . G T 2011 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.12;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2044,216,0 chrII 741235 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=84;Dels=0.00;FS=4.514;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.211;QD=22.20;ReadPosRankSum=1.690;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1898,207,0 chrII 741285 . G C 1894 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.55;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1927,210,0 chrII 741344 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.02;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1715,195,0 chrII 741729 . G T 1669 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.18;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1702,180,0 chrII 741732 . C T 1586 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.88;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1619,171,0 chrII 741956 . A C 1618 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.983;QD=21.86;ReadPosRankSum=1.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1651,180,0 chrII 741980 . G C 1425 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1458,171,0 chrII 741999 . A G 1324 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.736;QD=16.15;ReadPosRankSum=2.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1357,153,0 chrII 742040 . C T 343 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=6.86;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:42:376,42,0 chrII 742472 . A G 485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=16.17;ReadPosRankSum=1.502;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:57:518,57,0 chrII 742660 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.04;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1047,114,0 chrII 742691 . C T 869 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.20;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:96:902,96,0 chrII 742721 . C G 663 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.50;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:78:696,78,0 chrII 743076 . T C 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.119;QD=22.20;ReadPosRankSum=2.883;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1365,150,0 chrII 743655 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=2.925;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.328;QD=19.83;ReadPosRankSum=2.296;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1302,147,0 chrII 743673 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.162;QD=19.91;ReadPosRankSum=1.688;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1606,177,0 chrII 743899 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.47;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1834,204,0 chrII 744063 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.84;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1929,204,0 chrII 744356 . A C 998 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.36;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1031,117,0 chrII 744519 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=3.014;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-2.123;QD=22.18;ReadPosRankSum=2.305;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1541,171,0 chrII 744640 . A T 1128 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.12;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1161,123,0 chrII 745190 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.71;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1604,174,0 chrII 745192 . C G 1556 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=16.91;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1589,174,0 chrII 745280 . C A 2636 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.18;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2669,285,0 chrII 745349 . G C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.143;QD=22.15;ReadPosRankSum=1.406;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1916,199,0 chrII 745499 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.32;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1252,138,0 chrII 745793 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.83;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1241,132,0 chrII 745802 . T C 1010 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.06;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1043,114,0 chrII 745895 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.41;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1400,153,0 chrII 747177 . A T 1529 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1562,165,0 chrII 748630 . C G 1593 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.31;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1626,177,0 chrII 749056 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.56;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1542,162,0 chrII 749141 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0560;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.35;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2251,261,0 chrII 749186 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.90;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2478,279,0 chrII 749314 . C G 1262 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.53;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1295,144,0 chrII 749992 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=78;Dels=0.00;FS=6.175;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.276;QD=19.18;ReadPosRankSum=2.909;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:3,74:78:99:1529,174,0 chrII 750088 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.38;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1847,201,0 chrII 750157 . T C 2277 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1582;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.80;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2310,249,0 chrII 750883 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.50;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:850,93,0 chrII 750970 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.18;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:941,102,0 chrII 751316 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.30;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1683,186,0 chrII 751653 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.16;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1213,144,0 chrII 751970 . C A 1642 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.27;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:81:99:1675,177,0 chrII 752106 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.25;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1329,150,0 chrII 752153 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.21;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1468,156,0 chrII 752195 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.39;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1504,165,0 chrII 752266 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=3.388;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.433;QD=19.21;ReadPosRankSum=1.492;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1435,139,0 chrII 752292 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=16.15;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1228,141,0 chrII 752329 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=12.02;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:87:778,87,0 chrII 752333 . C T 812 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=11.60;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:93:845,93,0 chrII 752344 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=12.06;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1034,111,0 chrII 752361 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=12.86;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1203,129,0 chrII 752402 . T G 1844 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=17.07;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1877,204,0 chrII 752501 . G C 2673 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.38;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2706,303,0 chrII 752582 . A G 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=4.364;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.309;QD=20.67;ReadPosRankSum=1.701;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2348,258,0 chrII 752597 . T C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=-0.140;QD=18.48;ReadPosRankSum=1.701;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2084,231,0 chrII 752604 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=16.50;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1898,213,0 chrII 752672 . T C 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.100;QD=14.77;ReadPosRankSum=1.613;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1318,147,0 chrII 752718 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.89;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2241,243,0 chrII 752744 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.65;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2489,273,0 chrII 752810 . T C 2258 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.98;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2291,246,0 chrII 752817 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.910;QD=17.12;ReadPosRankSum=1.615;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2087,234,0 chrII 752916 . G A 2072 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.6498;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.98;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2105,228,0 chrII 752933 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.77;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2173,234,0 chrII 753131 . T A 1998 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.03;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2031,216,0 chrII 753144 . C G 1803 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.18;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1836,204,0 chrII 753198 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=16.27;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1172,123,0 chrII 753573 . T C 1081 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.02;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1114,126,0 chrII 753610 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.02;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1168,129,0 chrII 753721 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.67;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1087,120,0 chrII 753723 . A G 997 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.17;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1030,114,0 chrII 753759 . C T 822 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.68;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:855,90,0 chrII 753942 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1175,129,0 chrII 753990 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.34;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1083,120,0 chrII 754103 . A T 988 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.02;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1021,108,0 chrII 754139 . G A 752 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.28;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:785,84,0 chrII 754188 . G A 626 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.41;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:659,72,0 chrII 754197 . T C 733 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.32;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:84:766,84,0 chrII 754355 . G A 925 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.51;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:958,102,0 chrII 754404 . A G 802 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.28;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:835,90,0 chrII 754416 . A G 651 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.73;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:684,75,0 chrII 754436 . T C 652 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.11;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:685,75,0 chrII 754776 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2044,231,0 chrII 754911 . A G 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.997;QD=21.56;ReadPosRankSum=1.627;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1456,162,0 chrII 755157 . G T 1934 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1967,210,0 chrII 755748 . G A 1075 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.62;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1108,117,0 chrII 755817 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1479,156,0 chrII 756042 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.40;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1210,129,0 chrII 756063 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1886;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.67;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1041,114,0 chrII 756213 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.87;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1703,189,0 chrII 756267 . T C 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.791;QD=20.29;ReadPosRankSum=1.647;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1697,186,0 chrII 756533 . C A 2474 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.49;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2507,267,0 chrII 756789 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=101;Dels=0.00;FS=6.146;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.094;QD=17.03;ReadPosRankSum=2.886;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:3,94:101:99:1753,201,0 chrII 756803 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.53;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2053,222,0 chrII 757029 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.49;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1559,168,0 chrII 757437 . G C 1550 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.83;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1583,174,0 chrII 757833 . T A 1603 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.66;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1636,174,0 chrII 758049 . C G 1581 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.17;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1614,183,0 chrII 758401 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1437,162,0 chrII 758568 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=3.041;HaplotypeScore=10.9366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.249;QD=19.62;ReadPosRankSum=2.387;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1563,174,0 chrII 758608 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1865,201,0 chrII 758926 . T A 1543 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1576,168,0 chrII 758975 . T G 1274 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1307,144,0 chrII 759048 . T C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.472;QD=22.01;ReadPosRankSum=1.693;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1970,219,0 chrII 759221 . G T 1576 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.84;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1609,174,0 chrII 759357 . G A 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.102;QD=23.12;ReadPosRankSum=1.669;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2576,263,0 chrII 759661 . G T 1860 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6632;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.42;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1893,201,0 chrII 759711 . G C 1728 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.42;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1761,192,0 chrII 759726 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.77;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1358,153,0 chrII 760248 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.31;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1353,141,0 chrII 760255 . A T 1207 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.57;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1240,135,0 chrII 760302 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.47;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1029,111,0 chrII 760365 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.94;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1804,192,0 chrII 760599 . G A 3061 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.30;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3094,327,0 chrII 760767 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=8.1939;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;MQRankSum=-0.050;QD=20.86;ReadPosRankSum=1.631;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2182,237,0 chrII 760904 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.44;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2241,249,0 chrII 760960 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.22;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2183,243,0 chrII 761030 . A T 1570 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=122;Dels=0.03;FS=0.000;HaplotypeScore=12.3503;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=-1.585;QD=12.87;ReadPosRankSum=1.673;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1603,183,0 chrII 761033 . A T 1771 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.447;DP=126;Dels=0.00;FS=16.281;HaplotypeScore=11.5616;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=-2.426;QD=14.06;ReadPosRankSum=4.617;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:8,118:126:99:1804,192,0 chrII 761038 . G T 1720 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;MQRankSum=0.227;QD=14.10;ReadPosRankSum=1.363;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1753,186,0 chrII 761049 . C T 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;MQRankSum=-1.255;QD=13.84;ReadPosRankSum=0.906;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1542,165,0 chrII 761056 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;QD=11.78;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1388,147,0 chrII 761061 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.21;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1539,162,0 chrII 761079 . T A 152.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.556;DP=123;Dels=0.00;FS=1.755;HaplotypeScore=119.3287;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=-1.825;QD=1.24;ReadPosRankSum=7.169;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:28,95:123:24:185,24,0 chrII 761108 . T C 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=108.7634;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;MQRankSum=1.410;QD=9.48;ReadPosRankSum=0.363;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1256,135,0 chrII 761118 . T C 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;MQRankSum=-0.969;QD=10.14;ReadPosRankSum=1.703;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1240,135,0 chrII 761121 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=11.13;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1268,135,0 chrII 761249 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.09;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1826,198,0 chrII 761529 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=21.98;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1857,207,0 chrII 761685 . T C 2130 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2157;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.96;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2163,243,0 chrII 761787 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.57;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1775,189,0 chrII 761814 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.22;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1436,153,0 chrII 761829 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=13.07;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1013,114,0 chrII 761853 . T C 734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=-0.641;QD=9.92;ReadPosRankSum=1.685;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:87:767,87,0 chrII 761880 . A G 798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;MQRankSum=-0.799;QD=10.10;ReadPosRankSum=1.688;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:93:831,93,0 chrII 761901 . A G 719 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=8.46;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:84:752,84,0 chrII 761904 . T C 713 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=8.59;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:81:746,81,0 chrII 761943 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1144;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=15.37;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1570,168,0 chrII 761970 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.263;QD=15.44;ReadPosRankSum=1.704;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1979,225,0 chrII 762665 . A G 510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.481;QD=14.17;ReadPosRankSum=1.636;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:60:543,60,0 chrII 762804 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=26.51;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1067,114,0 chrII 763111 . T A 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.347;QD=19.32;ReadPosRankSum=1.592;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1946,213,0 chrII 763117 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.16;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1987,219,0 chrII 763288 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7935;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.81;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1557,180,0 chrII 763300 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=17.94;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1432,162,0 chrII 763357 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=16.15;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1309,141,0 chrII 763762 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.29;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1949,216,0 chrII 763909 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.72;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1732,186,0 chrII 764050 . T C 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.860;HaplotypeScore=9.3126;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.694;QD=20.28;ReadPosRankSum=1.655;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1858,213,0 chrII 764110 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.92;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1395,150,0 chrII 764239 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.18;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1447,156,0 chrII 764397 . C A 1143 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.41;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1176,126,0 chrII 764475 . C A 1020 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.55;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1053,111,0 chrII 764652 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.05;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1696,183,0 chrII 764667 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.50;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1563,165,0 chrII 764939 . A T 2851 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.5039;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.16;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2884,312,0 chrII 765894 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.03;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1751,186,0 chrII 766035 . T A 2013 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2046,216,0 chrII 766113 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3125;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.18;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1939,213,0 chrII 766137 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.692;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.546;QD=22.17;ReadPosRankSum=2.310;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1984,222,0 chrII 766200 . C G 2136 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.54;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2169,237,0 chrII 766339 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.75;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1672,186,0 chrII 766557 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.9902;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.76;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1673,177,0 chrII 766938 . A G 946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=48;Dels=0.00;FS=2.911;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.542;QD=19.71;ReadPosRankSum=2.348;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:979,111,0 chrII 767058 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.02;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:898,99,0 chrII 767298 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1247,138,0 chrII 767375 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.61;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1851,198,0 chrII 767433 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.97;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1681,183,0 chrII 767690 . A T 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.136;HaplotypeScore=7.1204;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.534;QD=17.47;ReadPosRankSum=1.633;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1291,135,0 chrII 767991 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=53;Dels=0.00;FS=13.059;HaplotypeScore=7.6440;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.613;QD=19.92;ReadPosRankSum=2.655;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:3,47:53:99:1089,123,0 chrII 768174 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=57.5112;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.81;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1890,204,0 chrII 768259 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=15.99;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1168,126,0 chrII 768260 . T G 1127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.121;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.388;QD=15.65;ReadPosRankSum=2.381;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1160,129,0 chrII 768449 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=61;Dels=0.00;FS=2.847;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.268;QD=21.62;ReadPosRankSum=2.368;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1352,153,0 chrII 769123 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.49;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1488,162,0 chrII 769789 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.33;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1867,198,0 chrII 770518 . G C 1149 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=5.7485;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.18;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:1182,132,0 chrII 770543 . G T 1269 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=16.27;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1302,138,0 chrII 771055 . C G 2161 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.05;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2194,246,0 chrII 771102 . A C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.012;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.589;QD=19.82;ReadPosRankSum=1.875;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1817,185,0 chrII 771536 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.90;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1588,168,0 chrII 772756 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.66;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1354,147,0 chrII 772937 . G T 1521 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1554,165,0 chrII 773821 . T A 236 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=12.42;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:269,30,0 chrII 774263 . A G 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.762;QD=17.40;ReadPosRankSum=1.455;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:903,99,0 chrII 774954 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.70;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1384,156,0 chrII 775070 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.217;QD=20.62;ReadPosRankSum=1.703;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2590,285,0 chrII 775233 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.63;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2137,228,0 chrII 775344 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.89;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1956,216,0 chrII 775560 . T C 2439 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.32;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2472,276,0 chrII 775563 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.58;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2482,276,0 chrII 775579 . C A 2251 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4235;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.76;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2284,249,0 chrII 776509 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.61;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1416,153,0 chrII 776545 . C T 888 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=17.41;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:921,99,0 chrII 776554 . C T 884 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=17.33;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:917,96,0 chrII 776559 . C G 768 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.36;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:801,87,0 chrII 776768 . G T 2153 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=14.8241;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.43;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2186,234,0 chrII 776918 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=2.622;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.881;QD=22.47;ReadPosRankSum=2.322;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1786,195,0 chrII 777071 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1535,171,0 chrII 777185 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=18.72;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2336,252,0 chrII 777200 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3551;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.02;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2475,261,0 chrII 777266 . G T 1980 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.06;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2013,219,0 chrII 777303 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=76;Dels=0.00;FS=6.439;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.937;QD=19.84;ReadPosRankSum=2.384;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1541,174,0 chrII 777341 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.0280;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.60;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1763,189,0 chrII 777491 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.84;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2242,240,0 chrII 777883 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=13.98;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1585,171,0 chrII 778161 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.80;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1559,168,0 chrII 778183 . T A 1502 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.23;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1535,165,0 chrII 778225 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.73;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1765,183,0 chrII 778285 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.422;QD=20.46;ReadPosRankSum=1.681;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1424,156,0 chrII 778544 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.70;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:935,99,0 chrII 778895 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.30;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1524,168,0 chrII 779386 . G C 1814 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.34;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1847,207,0 chrII 779455 . C T 2374 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.20;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2407,264,0 chrII 779530 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.39;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1664,189,0 chrII 779836 . G T 896 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=10.67;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:929,99,0 chrII 780187 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=21.51;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2206,240,0 chrII 780308 . T A 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=109;Dels=0.01;FS=9.280;HaplotypeScore=33.5545;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.082;QD=18.99;ReadPosRankSum=3.197;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:2103,225,0 chrII 780401 . A G 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DP=110;Dels=0.02;FS=11.287;HaplotypeScore=134.4753;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.841;QD=8.28;ReadPosRankSum=2.430;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:944,108,0 chrII 780416 . G A 395.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.835;DP=118;Dels=0.02;FS=7.189;HaplotypeScore=362.2934;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=1;MQRankSum=3.251;QD=3.35;ReadPosRankSum=-5.684;SB=-4.565e+02 GT:AD:DP:GQ:PL 1/1:64,52:116:7:427,7,0 chrII 780993 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.99;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1688,186,0 chrII 781117 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.9155;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.297;QD=19.24;ReadPosRankSum=0.052;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1957,188,0 chrII 781232 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.32;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2289,243,0 chrII 781709 . T C 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.196;QD=22.67;ReadPosRankSum=1.691;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1937,216,0 chrII 781730 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.46;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1690,189,0 chrII 781871 . T A 1772 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.35;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1805,192,0 chrII 781964 . A G 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.695;HaplotypeScore=4.2288;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-1.588;QD=17.56;ReadPosRankSum=1.696;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1754,192,0 chrII 781967 . T C 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.1620;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.196;QD=16.67;ReadPosRankSum=1.696;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1667,183,0 chrII 782012 . T A 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.706;QD=18.91;ReadPosRankSum=1.572;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2132,225,0 chrII 782052 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.14;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2601,288,0 chrII 782067 . T C 2309 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.08;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2342,255,0 chrII 782081 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.93;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2185,240,0 chrII 782175 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.65;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1437,153,0 chrII 782243 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.713;QD=19.79;ReadPosRankSum=1.681;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1379,153,0 chrII 782369 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=15.92;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2102,246,0 chrII 782372 . A T 2410 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.83;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2443,258,0 chrII 782557 . T G 2830 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.82;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2863,309,0 chrII 782574 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.78;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2363,255,0 chrII 782581 . A T 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.06;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2265,240,0 chrII 783142 . C A 1768 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.09;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1801,201,0 chrII 783292 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.52;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2422,264,0 chrII 783388 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2464,279,0 chrII 783589 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=132;Dels=0.00;FS=2.994;HaplotypeScore=11.5999;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.866;QD=22.45;ReadPosRankSum=2.394;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2997,330,0 chrII 783778 . C A 1532 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.16;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1565,165,0 chrII 784213 . T C 2659 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.45;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2692,306,0 chrII 784270 . A C 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.278;QD=19.80;ReadPosRankSum=1.701;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2290,249,0 chrII 784284 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.55;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2129,231,0 chrII 784336 . T A 2341 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.88;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2374,255,0 chrII 784573 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.49;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1670,180,0 chrII 784600 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.82;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:65:99:1191,126,0 chrII 784794 . T G 1281 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.79;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1314,144,0 chrII 784811 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=68;Dels=0.00;FS=6.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.866;QD=17.60;ReadPosRankSum=2.376;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1230,132,0 chrII 784884 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.75;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1027,108,0 chrII 784895 . G C 1030 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.20;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1063,120,0 chrII 784913 . C T 1190 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.64;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1223,132,0 chrII 785017 . T G 1299 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.65;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1332,147,0 chrII 785060 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.33;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1395,147,0 chrII 785066 . A C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.192;QD=20.38;ReadPosRankSum=1.402;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1317,144,0 chrII 785146 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.95;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1482,162,0 chrII 785196 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.98;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1484,156,0 chrII 785238 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.50;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1248,132,0 chrII 785248 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.43;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1177,123,0 chrII 785445 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=15.3060;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.71;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1380,150,0 chrII 785586 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=13.3897;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.73;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1277,135,0 chrII 785614 . T A 1189 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.23;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1222,132,0 chrII 785746 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=20.52;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1305,141,0 chrII 785852 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=42.0093;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=15.55;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1059,117,0 chrII 785908 . G T 877 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.66;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:910,99,0 chrII 786053 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.4475;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.13;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1066,120,0 chrII 786173 . C T 783 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.21;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:816,87,0 chrII 786204 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=25.34;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2263,240,0 chrII 786307 . A G 2219 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.11;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2252,246,0 chrII 786397 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=7.315;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.804;QD=24.06;ReadPosRankSum=1.661;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2367,261,0 chrII 786528 . G T 1934 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.49;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1967,213,0 chrII 786546 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.518;QD=18.60;ReadPosRankSum=1.696;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1837,207,0 chrII 786589 . T G 1981 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.05;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2014,219,0 chrII 786816 . T A 1986 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.04;FS=0.000;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.31;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2019,222,0 chrII 786902 . G T 1543 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.04;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1576,171,0 chrII 787011 . T C 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=106;Dels=0.00;FS=9.681;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.214;QD=18.13;ReadPosRankSum=2.913;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:3,101:106:99:1955,216,0 chrII 787329 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.61;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1599,171,0 chrII 787344 . A T 1511 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=16.98;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1544,174,0 chrII 787463 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=24.21;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2309,246,0 chrII 787620 . A G 1177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.434;QD=20.29;ReadPosRankSum=1.553;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1210,132,0 chrII 787633 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.06;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1043,114,0 chrII 787939 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.55;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1574,171,0 chrII 788190 . T G 1716 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.19;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1749,192,0 chrII 788369 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.81;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1261,138,0 chrII 788377 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.53;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1224,132,0 chrII 788501 . G C 1393 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.79;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1426,159,0 chrII 789182 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.52;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1703,180,0 chrII 789215 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.0798;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.00;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1363,153,0 chrII 789369 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1909,204,0 chrII 789930 . G C 1665 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.30;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1698,195,0 chrII 790329 . A T 1724 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1757,201,0 chrII 790539 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.575;QD=21.67;ReadPosRankSum=1.680;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1463,159,0 chrII 790680 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.24;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1245,141,0 chrII 790744 . T C 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.702;QD=18.77;ReadPosRankSum=1.685;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,73:77:99:1478,165,0 chrII 790803 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.9748;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.17;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2123,225,0 chrII 790890 . A G 2677 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.76;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2710,300,0 chrII 791214 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=4.771;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.577;QD=16.68;ReadPosRankSum=1.666;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1784,198,0 chrII 791232 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.69;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2052,219,0 chrII 791380 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.26;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2036,225,0 chrII 791816 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.42;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1503,165,0 chrII 791833 . C A 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.03;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1495,159,0 chrII 791900 . T A 2200 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=22.22;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2233,237,0 chrII 791901 . C A 2199 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=22.21;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2232,237,0 chrII 791936 . G C 1770 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4379;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.58;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1803,201,0 chrII 791949 . A G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.008;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.336;QD=21.31;ReadPosRankSum=-0.905;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1482,141,0 chrII 792199 . G A 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2398;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.029;QD=21.26;ReadPosRankSum=1.678;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1436,150,0 chrII 792210 . C A 1222 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.44;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1255,132,0 chrII 792247 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.90;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,129,0 chrII 792272 . C A 1620 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.50;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1653,174,0 chrII 792465 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.28;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,63:69:99:1570,171,0 chrII 792530 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.65;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1936,216,0 chrII 792968 . A G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=5.272;HaplotypeScore=4.9501;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.943;QD=24.02;ReadPosRankSum=1.629;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2459,270,0 chrII 793142 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4100;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.65;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2026,225,0 chrII 793241 . A C 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=76;Dels=0.00;FS=3.070;HaplotypeScore=8.6143;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.933;QD=14.13;ReadPosRankSum=2.906;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:3,72:76:99:1107,129,0 chrII 793247 . T A 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.00;FS=12.816;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.592;QD=15.04;ReadPosRankSum=2.386;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1206,132,0 chrII 793276 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.84;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1728,183,0 chrII 793315 . T G 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.35;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1966,216,0 chrII 793476 . A C 1464 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=17.43;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1497,162,0 chrII 793478 . C T 1446 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=17.21;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1479,159,0 chrII 793484 . A C 1404 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=16.14;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1437,159,0 chrII 793509 . A C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=1.047;QD=15.34;ReadPosRankSum=1.692;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1352,156,0 chrII 793538 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.01;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1554,168,0 chrII 793624 . G C 998 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.10;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1031,114,0 chrII 793635 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=15.60;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1016,111,0 chrII 793636 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=16.27;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1058,111,0 chrII 793772 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.85;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1672,180,0 chrII 793881 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.71;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1923,213,0 chrII 794038 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.500;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.695;QD=23.10;ReadPosRankSum=1.695;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2204,240,0 chrII 794075 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.09;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1999,216,0 chrII 794106 . T A 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.149;QD=20.86;ReadPosRankSum=1.529;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1931,201,0 chrII 794124 . T A 1666 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=17.91;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1699,177,0 chrII 794237 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.512;HaplotypeScore=9.0246;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=1.008;QD=21.26;ReadPosRankSum=1.701;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2393,273,0 chrII 794296 . G C 2829 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.21;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2862,309,0 chrII 794317 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.02;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2724,300,0 chrII 794394 . A G 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=3.027;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.344;QD=19.82;ReadPosRankSum=2.345;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2372,264,0 chrII 794415 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.52;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2536,270,0 chrII 794478 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.28;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2033,216,0 chrII 794615 . C A 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.652;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=-0.056;QD=15.15;ReadPosRankSum=1.248;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1442,156,0 chrII 794621 . C G 1409 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=14.68;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1442,162,0 chrII 794626 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=15.60;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1562,165,0 chrII 794651 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=16.05;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1654,183,0 chrII 794794 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4516;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=18.27;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1769,195,0 chrII 794800 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=19.02;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1764,192,0 chrII 794828 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=16.49;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1764,198,0 chrII 794844 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.82;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1958,216,0 chrII 794921 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=24.14;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2254,240,0 chrII 794948 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.85;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1672,189,0 chrII 794976 . A G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=99;Dels=0.00;FS=4.095;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.003;QD=19.66;ReadPosRankSum=1.696;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,94:99:99:1979,219,0 chrII 795012 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.48;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2240,237,0 chrII 795035 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.02;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2125,243,0 chrII 795146 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.35;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2271,255,0 chrII 795161 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=17.98;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2370,255,0 chrII 795170 . G A 2179 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=16.63;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2212,243,0 chrII 795224 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.14;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2193,255,0 chrII 795354 . G C 2796 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.53;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2829,306,0 chrII 795419 . T G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.882;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.630;QD=17.51;ReadPosRankSum=-0.315;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1977,219,0 chrII 795422 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.37;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2091,222,0 chrII 795433 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.102;QD=16.49;ReadPosRankSum=1.645;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1995,225,0 chrII 795692 . C A 2984 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.62;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3017,324,0 chrII 795756 . C G 2840 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.07;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2873,312,0 chrII 795869 . A G 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=3.032;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.535;QD=22.19;ReadPosRankSum=2.406;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2541,285,0 chrII 795987 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.82;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1886,204,0 chrII 796189 . G C 1754 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.93;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1787,192,0 chrII 796271 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=20.21;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1266,132,0 chrII 796295 . T C 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=6.990;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.270;QD=19.92;ReadPosRankSum=1.617;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1228,135,0 chrII 796474 . T C 1091 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3066;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.14;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1124,126,0 chrII 796525 . T A 413 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=11.3773;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=10.32;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:446,51,0 chrII 796593 . A T 301 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.14;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:334,36,0 chrII 796619 . C T 463 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.6982;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=10.07;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:54:496,54,0 chrII 796648 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=11.55;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:66:622,66,0 chrII 796710 . T G 1395 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.14;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1428,153,0 chrII 796726 . T A 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.440;QD=21.63;ReadPosRankSum=1.681;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1504,162,0 chrII 796912 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=24.59;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2049,216,0 chrII 797042 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.96;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2069,225,0 chrII 797056 . T C 1911 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4511;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.92;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1944,225,0 chrII 797164 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.96;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2580,285,0 chrII 797248 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.06;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2223,234,0 chrII 797299 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.41;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1948,216,0 chrII 797326 . T C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.488;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.902;QD=18.84;ReadPosRankSum=1.696;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1860,207,0 chrII 797347 . A T 2063 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.23;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2096,225,0 chrII 797413 . G C 1824 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=17.88;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1857,210,0 chrII 797593 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=15.81;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1140,126,0 chrII 797599 . C G 1068 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.71;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1101,120,0 chrII 797653 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.58;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1334,147,0 chrII 797758 . T C 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.635;QD=20.48;ReadPosRankSum=1.675;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1262,138,0 chrII 797899 . A G 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.380;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.439;QD=19.64;ReadPosRankSum=0.440;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1231,112,0 chrII 797923 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;DP=64;Dels=0.00;FS=6.992;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-1.653;QD=19.14;ReadPosRankSum=0.060;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:2,60:64:99:1258,123,0 chrII 797992 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.3452;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.97;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1271,138,0 chrII 798022 . A G 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=5.185;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.627;QD=19.71;ReadPosRankSum=1.680;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1334,147,0 chrII 798262 . T C 1133 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=15.11;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1166,129,0 chrII 798480 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.50;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1735,189,0 chrII 798782 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.61;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1546,171,0 chrII 798886 . C A 1829 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.86;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1862,201,0 chrII 799021 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.96;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1531,165,0 chrII 799081 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=13.05;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1077,120,0 chrII 799214 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.05;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1276,141,0 chrII 799230 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.11;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1300,147,0 chrII 799240 . G A 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DP=72;Dels=0.00;FS=4.199;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=1.195;QD=20.89;ReadPosRankSum=-0.854;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1537,162,0 chrII 799511 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=19.68;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1371,153,0 chrII 799523 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.23;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1023,114,0 chrII 799566 . A T 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.520;QD=19.32;ReadPosRankSum=1.675;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1192,129,0 chrII 799572 . A G 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.087;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.185;QD=18.09;ReadPosRankSum=1.672;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1064,123,0 chrII 799718 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.59;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1037,114,0 chrII 799796 . A G 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=4.5037;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.577;QD=19.40;ReadPosRankSum=1.694;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1818,198,0 chrII 799806 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5472;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.46;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1915,204,0 chrII 800115 . C T 608 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.42;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:641,69,0 chrII 800195 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.52;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1059,117,0 chrII 800316 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1142,120,0 chrII 800655 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=66;Dels=0.02;FS=3.069;HaplotypeScore=11.1964;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.589;QD=23.73;ReadPosRankSum=2.374;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1599,174,0 chrII 800694 . A G 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.357;QD=24.43;ReadPosRankSum=1.677;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1572,171,0 chrII 800746 . T C 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.233;QD=21.39;ReadPosRankSum=1.681;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1466,165,0 chrII 800859 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.29;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2440,258,0 chrII 800911 . A C 2235 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.69;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2268,249,0 chrII 801524 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=20.42;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1748,195,0 chrII 801661 . A T 1032 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-6.079;DP=87;Dels=0.00;FS=151.941;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;MQRankSum=0.924;QD=11.86;ReadPosRankSum=2.105;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:36,51:87:97:1065,97,0 chrII 801662 . T A 1073 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.850;DP=86;Dels=0.00;FS=167.484;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=-0.211;QD=12.48;ReadPosRankSum=1.784;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:35,51:86:99:1106,99,0 chrII 801665 . A C 1068 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=88;Dels=0.00;FS=171.921;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;MQRankSum=1.083;QD=12.14;ReadPosRankSum=2.080;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:35,53:88:98:1101,98,0 chrII 801676 . G T 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=84;Dels=0.00;FS=164.439;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;MQRankSum=1.676;QD=12.20;ReadPosRankSum=2.208;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:30,54:84:76:1058,76,0 chrII 801677 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.622;DP=81;Dels=0.00;FS=153.185;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.40;MQ0=0;MQRankSum=0.546;QD=12.44;ReadPosRankSum=1.538;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:27,54:81:74:1041,74,0 chrII 801689 . A G 1152 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.78;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1185,129,0 chrII 801690 . T G 1118 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=10.797;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=1.661;QD=14.91;ReadPosRankSum=2.384;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1151,126,0 chrII 801693 . T C 1169 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=14.26;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1202,129,0 chrII 801699 . G A 1207 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=13.56;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1240,132,0 chrII 801704 . C T 935 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221;DP=97;Dels=0.00;FS=248.368;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;MQRankSum=-0.375;QD=9.64;ReadPosRankSum=1.458;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:31,66:97:32:968,32,0 chrII 801707 . T C 874.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.333;DP=106;Dels=0.00;FS=265.994;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;MQRankSum=0.172;QD=8.25;ReadPosRankSum=0.727;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:32,74:106:12:907,12,0 chrII 801710 . A T 896.64 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;DP=106;Dels=0.00;FS=247.244;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=0;MQRankSum=0.200;QD=8.46;ReadPosRankSum=0.509;SB=-3.654e+00 GT:AD:DP:GQ:PL 0/1:32,74:106:5:926,0,5 chrII 801713 . G A 845.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;DP=102;Dels=0.00;FS=256.210;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=0;MQRankSum=0.338;QD=8.29;ReadPosRankSum=0.316;SB=-3.348e+00 GT:AD:DP:GQ:PL 0/1:31,71:102:8:875,0,8 chrII 801716 . A G 854 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.051;DP=100;Dels=0.00;FS=244.118;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;MQRankSum=0.043;QD=8.54;ReadPosRankSum=-0.735;SB=-7.388e-03 GT:AD:DP:GQ:PL 1/1:30,70:100:40:887,40,0 chrII 801722 . C T 711.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DP=94;Dels=0.00;FS=240.133;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=0;MQRankSum=-1.215;QD=7.56;ReadPosRankSum=-1.431;SB=-3.025e+00 GT:AD:DP:GQ:PL 0/1:30,64:94:24:741,0,24 chrII 801728 . T C 539.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;DP=89;Dels=0.00;FS=226.945;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=1.847;QD=6.06;ReadPosRankSum=-1.187;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,54:89:52:569,0,52 chrII 801729 . A C 537.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;DP=89;Dels=0.00;FS=226.945;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=0.501;QD=6.03;ReadPosRankSum=-1.213;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,54:89:40:567,0,40 chrII 801731 . G A 563.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.263;DP=90;Dels=0.00;FS=230.998;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=-1.155;QD=6.26;ReadPosRankSum=-2.020;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,54:90:51:593,0,51 chrII 801732 . T C 546.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=91;Dels=0.00;FS=230.998;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=0.029;QD=6.00;ReadPosRankSum=-1.835;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,54:91:45:576,0,45 chrII 801738 . C A 562.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;DP=91;Dels=0.00;FS=238.886;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=-0.828;QD=6.18;ReadPosRankSum=-5.676;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:37,54:91:68:592,0,68 chrII 801740 . C A 562.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.844;DP=90;Dels=0.00;FS=234.977;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=29.30;MQ0=0;MQRankSum=0.194;QD=6.24;ReadPosRankSum=-6.552;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,54:90:65:592,0,65 chrII 801755 . G A 128.13 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=3.37;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:161,18,0 chrII 801765 . A G 96.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=15.682;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=0;MQRankSum=1.639;QD=2.60;ReadPosRankSum=1.639;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,36:37:15:129,15,0 chrII 801772 . G A 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=2.17;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:104,12,0 chrII 801773 . C T 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=2.95;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:15:130,15,0 chrII 801788 . C T 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=1.34;SB=-7.145e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:12:109,12,0 chrII 801794 . C T 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;DP=62;Dels=0.00;FS=169.443;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=1;MQRankSum=0.389;QD=1.03;ReadPosRankSum=4.744;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:37,25:62:34:94,0,34 chrII 801797 . C T 132.13 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=1;QD=2.17;SB=-6.251e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:18:165,18,0 chrII 801813 . C A,G 84.72 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.88;MQ0=2;QD=2.42;SB=-2.997e+02 GT:AD:DP:GQ:PL 1/2:2,21,12:35:35:144,47,35,97,0,91 chrII 801822 . T A 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=3;QD=4.41;SB=-2.653e+02 GT:AD:DP:GQ:PL 1/1:3,22:25:15:143,15,0 chrII 801824 . T C 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=25;Dels=0.00;FS=58.107;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=3;MQRankSum=0.033;QD=1.52;ReadPosRankSum=-0.692;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:15,10:25:41:68,0,41 chrII 801825 . C G 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=3;QD=4.01;SB=-2.523e+02 GT:AD:DP:GQ:PL 1/1:3,22:25:15:133,15,0 chrII 801827 . A C,G 60.34 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.96;MQ0=3;QD=2.41;SB=-2.303e+02 GT:AD:DP:GQ:PL 1/2:3,10,12:25:39:120,48,39,72,0,66 chrII 801830 . G A,T 64.42 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.08;MQ0=3;QD=2.48;SB=-2.424e+02 GT:AD:DP:GQ:PL 1/2:3,11,12:26:38:124,47,38,77,0,71 chrII 801839 . T G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;DP=23;Dels=0.00;FS=54.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=2;MQRankSum=-0.959;QD=1.48;ReadPosRankSum=2.665;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:14,9:23:38:64,0,38 chrII 801848 . G A 107.26 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=2;QD=4.66;SB=-2.353e+02 GT:AD:DP:GQ:PL 1/1:2,21:23:15:140,15,0 chrII 801849 . A G 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;DP=23;Dels=0.00;FS=54.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=2;MQRankSum=-0.817;QD=1.61;ReadPosRankSum=3.162;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:14,9:23:41:67,0,41 chrII 801854 . T C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=2;QD=4.80;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:2,8:10:9:80,9,0 chrII 801934 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=19.83;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:965,108,0 chrII 801984 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=0;QD=21.51;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1797,204,0 chrII 802022 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=18.97;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1551,162,0 chrII 802089 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.85;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1343,153,0 chrII 802143 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=21.59;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1501,165,0 chrII 802170 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=22.51;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1271,135,0 chrII 802185 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=18.96;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:981,114,0 chrII 802198 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=17.63;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:791,90,0 chrII 802237 . C G 206.01 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=8.58;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:239,27,0 chrII 802238 . T G 159.06 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.23;SB=-1.631e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:192,21,0 chrII 802239 . T A 165.06 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.50;SB=-1.671e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:198,21,0 chrII 802250 . A C 202.03 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.97;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:235,24,0 chrII 802257 . C T 177.03 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=5.71;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:24:210,24,0 chrII 802259 . G T 187.03 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=5.84;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:220,24,0 chrII 802273 . A C 236 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=5.62;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:269,30,0 chrII 802329 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.12;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1026,111,0 chrII 802358 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.34;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1355,147,0 chrII 802428 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.61;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1412,156,0 chrII 802500 . G A 849 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=21.77;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:882,99,0 chrII 802507 . C A 875 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=22.44;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:908,99,0 chrII 802634 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=22.20;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1010,111,0 chrII 802651 . A G 869 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=21.72;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:902,96,0 chrII 802656 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=21.00;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:894,99,0 chrII 802697 . C T 224.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;DP=43;Dels=0.00;FS=9.674;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=46.71;MQ0=0;MQRankSum=-4.489;QD=5.21;ReadPosRankSum=2.152;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:27,15:43:99:254,0,410 chrII 802713 . A T 387.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=61;Dels=0.00;FS=3.930;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=46.89;MQ0=0;MQRankSum=-5.558;QD=6.34;ReadPosRankSum=1.764;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:37,24:61:99:417,0,678 chrII 802751 . G C 1696 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=23.56;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1729,192,0 chrII 802760 . C T 331.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.41;MQ0=0;MQRankSum=-5.687;QD=5.09;ReadPosRankSum=0.460;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:42,23:65:99:361,0,804 chrII 802808 . C T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;DP=39;Dels=0.00;FS=1.831;HaplotypeScore=4.9546;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=0;MQRankSum=-1.883;QD=0.46;ReadPosRankSum=-1.582;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:31,7:39:48:48,0,632 chrII 802898 . T C 772 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=17.95;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:805,87,0 chrII 802910 . A G 534 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=12.71;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:63:567,63,0 chrII 802952 . A G 272.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;DP=47;Dels=0.00;FS=10.224;HaplotypeScore=39.9177;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=1.240;QD=5.79;ReadPosRankSum=-0.762;SB=-4.152e+02 GT:AD:DP:GQ:PL 0/1:3,44:47:10:302,0,10 chrII 802967 . C T 238.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=61;Dels=0.00;FS=16.627;HaplotypeScore=2.6377;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=-1.845;QD=3.91;ReadPosRankSum=0.722;SB=-4.932e+02 GT:AD:DP:GQ:PL 0/1:5,55:61:10:268,0,10 chrII 803003 . G A 809 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=11.39;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:842,93,0 chrII 803033 . C A 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;DP=77;Dels=0.00;FS=36.215;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=2.307;QD=14.21;ReadPosRankSum=0.182;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:9,68:77:59:1127,59,0 chrII 803138 . T C 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=0.112;QD=19.40;ReadPosRankSum=1.676;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1236,141,0 chrII 803180 . C T 665 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=14.46;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:698,81,0 chrII 803186 . A G 612 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.75;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:48:78:645,78,0 chrII 803188 . C T 566 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;DP=48;Dels=0.00;FS=19.442;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=0.321;QD=11.79;ReadPosRankSum=2.016;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:7,41:48:54:599,54,0 chrII 803220 . G C 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.718;DP=56;Dels=0.00;FS=28.261;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;MQRankSum=-0.867;QD=15.75;ReadPosRankSum=-0.074;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:7,49:56:99:915,105,0 chrII 803261 . T C 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=73;Dels=0.00;FS=42.591;HaplotypeScore=5.3777;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;MQRankSum=0.392;QD=17.44;ReadPosRankSum=2.333;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:9,63:73:99:1306,122,0 chrII 803273 . G A 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.315;DP=76;Dels=0.00;FS=40.134;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-0.361;QD=17.43;ReadPosRankSum=1.975;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:10,66:76:99:1358,129,0 chrII 803351 . G A 1222 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;DP=84;Dels=0.00;FS=51.364;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;MQRankSum=0.699;QD=14.55;ReadPosRankSum=2.299;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:27,57:84:73:1255,73,0 chrII 803355 . C G 1328 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=16.60;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1361,156,0 chrII 803356 . A T 1378 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=17.22;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1411,156,0 chrII 803398 . T G 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.947;DP=96;Dels=0.00;FS=77.335;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=3.558;QD=10.71;ReadPosRankSum=-0.301;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:26,70:96:34:1061,34,0 chrII 803495 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=14.99;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1292,144,0 chrII 803507 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8796;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=13.54;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1238,141,0 chrII 803528 . T C 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=1.055;QD=12.63;ReadPosRankSum=1.692;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1132,129,0 chrII 803546 . T C 250.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;DP=78;Dels=0.00;FS=2.057;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=1.153;QD=3.21;ReadPosRankSum=0.818;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:32,46:78:99:280,0,409 chrII 803547 . C T 254.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DP=78;Dels=0.00;FS=2.057;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=0.604;QD=3.26;ReadPosRankSum=0.513;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:32,46:78:99:284,0,403 chrII 803552 . C T 810 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0313;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=10.95;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:843,93,0 chrII 803558 . A G 173.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490;DP=72;Dels=0.00;FS=3.472;HaplotypeScore=3.9544;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=0;MQRankSum=0.459;QD=2.40;ReadPosRankSum=-2.400;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:29,43:72:99:203,0,425 chrII 803570 . T C 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;DP=72;Dels=0.00;FS=0.931;HaplotypeScore=3.4597;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=-0.468;QD=2.39;ReadPosRankSum=-3.644;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:28,44:72:99:202,0,386 chrII 803576 . A G 159.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=0.007;QD=2.61;ReadPosRankSum=-1.625;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:29,32:61:99:189,0,394 chrII 803578 . C T 179.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.176;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=0.373;QD=3.03;ReadPosRankSum=-1.757;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:27,32:59:99:209,0,387 chrII 803579 . C T 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=0;MQRankSum=-1.179;QD=2.59;ReadPosRankSum=-1.529;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:27,32:59:99:183,0,388 chrII 803581 . G A 181.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=-1.134;QD=3.12;ReadPosRankSum=-1.509;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:26,32:58:99:211,0,367 chrII 803594 . C T 315.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.743;DP=61;Dels=0.00;FS=9.459;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=0;MQRankSum=-0.185;QD=5.16;ReadPosRankSum=0.436;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:24,37:61:99:345,0,328 chrII 803597 . T A 310.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DP=56;Dels=0.00;FS=15.897;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=0;MQRankSum=0.152;QD=5.54;ReadPosRankSum=0.797;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:22,34:56:99:340,0,304 chrII 803600 . T G 311.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;DP=52;Dels=0.00;FS=20.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=0;MQRankSum=-0.069;QD=5.98;ReadPosRankSum=1.508;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:18,33:52:99:341,0,309 chrII 803603 . A G 268.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DP=49;Dels=0.00;FS=18.255;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=0;MQRankSum=1.250;QD=5.47;ReadPosRankSum=2.279;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:17,32:49:99:298,0,295 chrII 803605 . A G 276.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.248;DP=48;Dels=0.00;FS=15.366;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=1.126;QD=5.75;ReadPosRankSum=2.898;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:16,32:48:99:306,0,270 chrII 803609 . A G 255.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;DP=49;Dels=0.00;FS=14.842;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=0.857;QD=5.20;ReadPosRankSum=2.983;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:15,34:49:99:285,0,242 chrII 803617 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;DP=39;Dels=0.00;FS=29.542;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=0;MQRankSum=-0.834;QD=0.27;ReadPosRankSum=-3.238;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,9:39:40:40,0,324 chrII 803618 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DP=38;Dels=0.00;FS=25.901;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=0;MQRankSum=-0.870;QD=0.27;ReadPosRankSum=-2.908;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,6:38:40:40,0,294 chrII 803661 . T C 498.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=76;Dels=0.00;FS=23.056;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=-0.922;QD=6.55;ReadPosRankSum=0.063;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:33,43:76:99:528,0,430 chrII 803666 . T G 478.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;DP=80;Dels=0.00;FS=17.486;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-1.581;QD=5.98;ReadPosRankSum=-0.334;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:36,44:80:99:508,0,543 chrII 803672 . T A 544.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;DP=83;Dels=0.00;FS=19.140;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=-1.819;QD=6.55;ReadPosRankSum=-1.351;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:37,46:83:99:574,0,626 chrII 803681 . G A 389.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=91;Dels=0.00;FS=15.336;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=28.57;MQ0=0;MQRankSum=-0.147;QD=4.27;ReadPosRankSum=0.878;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:48,43:91:99:419,0,750 chrII 803683 . C G 353.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;DP=95;Dels=0.00;FS=12.904;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=-0.478;QD=3.72;ReadPosRankSum=1.374;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:51,43:95:99:383,0,821 chrII 803684 . A G 365.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.167;DP=95;Dels=0.00;FS=12.904;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=-2.831;QD=3.84;ReadPosRankSum=1.442;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:52,43:95:99:395,0,876 chrII 803687 . T C 382.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;DP=102;Dels=0.00;FS=14.533;HaplotypeScore=3.3829;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-0.576;QD=3.75;ReadPosRankSum=0.348;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:53,49:102:99:412,0,954 chrII 803690 . G A 366.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;DP=104;Dels=0.00;FS=14.331;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=-0.313;QD=3.52;ReadPosRankSum=0.593;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:55,49:104:99:396,0,962 chrII 803693 . C T 395.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.748;DP=107;Dels=0.00;FS=16.160;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=-0.503;QD=3.69;ReadPosRankSum=1.454;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:58,49:107:99:425,0,1002 chrII 803699 . A G 330.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.422;DP=111;Dels=0.00;FS=18.047;HaplotypeScore=3.3036;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=-1.395;QD=2.97;ReadPosRankSum=1.720;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:62,49:111:99:360,0,1119 chrII 803732 . G A 293.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.723;DP=119;Dels=0.00;FS=12.397;HaplotypeScore=8.3558;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=-0.016;QD=2.46;ReadPosRankSum=-1.182;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:71,47:119:99:323,0,1305 chrII 803735 . C A 276.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.090;DP=119;Dels=0.00;FS=12.694;HaplotypeScore=7.3654;MLEAC=1;MLEAF=0.500;MQ=28.51;MQ0=0;MQRankSum=0.825;QD=2.32;ReadPosRankSum=-1.255;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:73,46:119:99:306,0,1345 chrII 803737 . C T 261.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;DP=117;Dels=0.00;FS=11.217;HaplotypeScore=7.2209;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=0;MQRankSum=-0.536;QD=2.23;ReadPosRankSum=-1.711;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:71,45:117:99:291,0,1402 chrII 803741 . A G 235.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.626;DP=123;Dels=0.00;FS=8.960;HaplotypeScore=9.5869;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=-0.488;QD=1.91;ReadPosRankSum=-2.358;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:73,49:123:99:265,0,1446 chrII 803744 . T A 286.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.947;DP=119;Dels=0.00;FS=12.766;HaplotypeScore=9.7815;MLEAC=1;MLEAF=0.500;MQ=29.79;MQ0=0;MQRankSum=-0.193;QD=2.40;ReadPosRankSum=-2.918;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:71,48:119:99:316,0,1345 chrII 803746 . A G 262.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.768;DP=117;Dels=0.00;FS=9.321;HaplotypeScore=8.0012;MLEAC=1;MLEAF=0.500;MQ=29.72;MQ0=0;MQRankSum=1.102;QD=2.24;ReadPosRankSum=-2.474;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:70,47:117:99:292,0,1419 chrII 803759 . C T 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.646;DP=119;Dels=0.00;FS=4.515;HaplotypeScore=11.8018;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=0;MQRankSum=2.047;QD=3.13;ReadPosRankSum=-2.808;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:63,56:119:99:403,0,1175 chrII 803762 . C T 298.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=120;Dels=0.00;FS=11.953;HaplotypeScore=12.5358;MLEAC=1;MLEAF=0.500;MQ=34.30;MQ0=0;MQRankSum=0.277;QD=2.48;ReadPosRankSum=-1.364;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:66,54:120:99:328,0,1241 chrII 803850 . G A 695.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;DP=119;Dels=0.00;FS=20.226;HaplotypeScore=7.9903;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=-2.692;QD=5.84;ReadPosRankSum=-0.435;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:70,49:119:99:725,0,1203 chrII 803852 . C T 716.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=114;Dels=0.00;FS=29.607;HaplotypeScore=7.2017;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=0;MQRankSum=-2.867;QD=6.28;ReadPosRankSum=0.020;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:70,44:114:99:746,0,1339 chrII 803861 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=22.16;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2404,267,0 chrII 803924 . C T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.013;DP=65;Dels=0.00;FS=13.106;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=41.72;MQ0=0;MQRankSum=-2.752;QD=0.17;ReadPosRankSum=-1.768;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:43,22:65:41:41,0,587 chrII 803929 . T A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;DP=66;Dels=0.00;FS=17.651;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=39.92;MQ0=0;MQRankSum=-3.306;QD=0.33;ReadPosRankSum=-1.199;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:44,22:66:52:52,0,532 chrII 803930 . G A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.490;DP=66;Dels=0.00;FS=20.341;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=39.92;MQ0=0;MQRankSum=-2.705;QD=0.35;ReadPosRankSum=-1.238;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:43,23:66:53:53,0,533 chrII 803935 . G A 666 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=9.94;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:75:699,75,0 chrII 803942 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=63;Dels=0.00;FS=11.782;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=36.85;MQ0=0;MQRankSum=-2.534;QD=0.24;ReadPosRankSum=-0.956;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:37,26:63:45:45,0,356 chrII 803945 . G A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=63;Dels=0.00;FS=12.474;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=36.85;MQ0=0;MQRankSum=-2.965;QD=0.68;ReadPosRankSum=-0.882;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:36,27:63:73:73,0,354 chrII 803948 . G A 453 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=7.19;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:60:486,60,0 chrII 803954 . G A 474 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=6.68;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:60:507,60,0 chrII 803964 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=6.41;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:57:514,57,0 chrII 803987 . G T 254 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=3.22;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:33:287,33,0 chrII 803993 . C T 244 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4430;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.21;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:30:277,30,0 chrII 803999 . T A 297 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0148;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=3.76;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:36:330,36,0 chrII 804004 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;DP=72;Dels=0.00;FS=1.789;HaplotypeScore=6.0689;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=0;MQRankSum=-0.372;QD=0.17;ReadPosRankSum=2.287;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:50,21:72:42:42,0,161 chrII 804013 . G A 308.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.039;DP=72;Dels=0.00;FS=3.737;HaplotypeScore=5.1229;MLEAC=1;MLEAF=0.500;MQ=34.66;MQ0=0;MQRankSum=1.103;QD=4.28;ReadPosRankSum=-2.007;SB=-1.630e+02 GT:AD:DP:GQ:PL 0/1:21,51:72:50:338,0,50 chrII 804023 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.627;DP=103;Dels=0.00;FS=23.328;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=34.87;MQ0=0;MQRankSum=-2.750;QD=0.17;ReadPosRankSum=-3.906;SB=-4.990e+02 GT:AD:DP:GQ:PL 0/1:54,49:103:47:47,0,421 chrII 804059 . A G 192.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;DP=149;Dels=0.00;FS=26.236;HaplotypeScore=6.3847;MLEAC=1;MLEAF=0.500;MQ=40.42;MQ0=0;MQRankSum=-5.479;QD=1.29;ReadPosRankSum=0.739;SB=-7.530e+02 GT:AD:DP:GQ:PL 0/1:71,78:149:99:222,0,973 chrII 804060 . T C 169.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.982;DP=150;Dels=0.00;FS=28.412;HaplotypeScore=5.4113;MLEAC=1;MLEAF=0.500;MQ=40.58;MQ0=0;MQRankSum=-6.077;QD=1.13;ReadPosRankSum=1.160;SB=-7.750e+02 GT:AD:DP:GQ:PL 0/1:72,78:150:99:199,0,1157 chrII 804068 . C T 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;DP=180;Dels=0.00;FS=28.964;HaplotypeScore=4.0665;MLEAC=1;MLEAF=0.500;MQ=41.89;MQ0=0;MQRankSum=-5.739;QD=1.10;ReadPosRankSum=0.043;SB=-8.500e+02 GT:AD:DP:GQ:PL 0/1:79,101:180:99:228,0,1329 chrII 804089 . A G 421.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540;DP=210;Dels=0.00;FS=30.914;HaplotypeScore=5.4261;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=0;MQRankSum=-7.059;QD=2.00;ReadPosRankSum=0.215;SB=-9.950e+02 GT:AD:DP:GQ:PL 0/1:94,116:210:99:451,0,1726 chrII 804095 . A G 1374.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840;DP=212;Dels=0.00;FS=28.153;HaplotypeScore=4.0916;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=7.689;QD=6.48;ReadPosRankSum=0.891;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:122,90:212:99:1404,0,709 chrII 804104 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=4.9779;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=12.72;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,211:213:99:2742,315,0 chrII 804112 . C A 3316.01 PASS AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=9.8771;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=14.61;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,227:227:99:3316,351,0 chrII 804137 . C T 1075.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;DP=233;Dels=0.00;FS=4.964;HaplotypeScore=13.0673;MLEAC=1;MLEAF=0.500;MQ=46.12;MQ0=0;MQRankSum=-4.736;QD=4.61;ReadPosRankSum=-0.171;SB=-8.580e+02 GT:AD:DP:GQ:PL 0/1:114,118:233:99:1105,0,1802 chrII 804167 . T C 1236.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.339;DP=195;Dels=0.00;FS=1.303;HaplotypeScore=12.5888;MLEAC=1;MLEAF=0.500;MQ=48.09;MQ0=0;MQRankSum=-4.077;QD=6.34;ReadPosRankSum=-0.281;SB=-4.590e+02 GT:AD:DP:GQ:PL 0/1:97,95:195:99:1266,0,1622 chrII 804209 . G A 1908.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DP=163;Dels=0.00;FS=0.647;HaplotypeScore=15.4138;MLEAC=1;MLEAF=0.500;MQ=53.05;MQ0=0;MQRankSum=5.282;QD=11.71;ReadPosRankSum=-1.956;SB=-7.150e+02 GT:AD:DP:GQ:PL 0/1:59,103:163:99:1938,0,685 chrII 804212 . T C 657.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.422;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=16.0558;MLEAC=1;MLEAF=0.500;MQ=53.26;MQ0=0;MQRankSum=-3.976;QD=4.01;ReadPosRankSum=1.408;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:105,56:164:99:687,0,2154 chrII 804303 . A G 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-0.666;QD=20.28;ReadPosRankSum=1.694;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1899,213,0 chrII 804311 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=21.01;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2008,219,0 chrII 804467 . T G 4216.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=234;Dels=0.00;FS=10.780;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-1.956;QD=18.02;ReadPosRankSum=2.429;SB=-1.736e+03 GT:AD:DP:GQ:PL 1/1:2,232:234:99:4216,459,0 chrII 804522 . C T 4137.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=8.9678;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.79;SB=-2.106e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4137,447,0 chrII 804556 . T C 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.934;DP=163;Dels=0.00;FS=18.672;HaplotypeScore=11.0303;MLEAC=1;MLEAF=0.500;MQ=54.52;MQ0=0;MQRankSum=-6.240;QD=0.94;ReadPosRankSum=-3.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,32:163:99:183,0,2383 chrII 804560 . T C 3114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=153;Dels=0.00;FS=4.213;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.758;QD=20.35;ReadPosRankSum=1.709;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3147,345,0 chrII 804646 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=80;Dels=0.00;FS=2.267;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.380;QD=19.79;ReadPosRankSum=1.646;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1616,177,0 chrII 804707 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=23.02;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2105,231,0 chrII 804775 . G C 2039 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.81;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2072,225,0 chrII 804912 . A C 1335 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=4;QD=16.69;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1368,147,0 chrII 805021 . T A 770 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=1;QD=16.74;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:803,87,0 chrII 805115 . C T 366 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=8;QD=8.93;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:45:399,45,0 chrII 805208 . T G 753 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=8;QD=11.77;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:87:786,87,0 chrII 805342 . A T 138.13 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.78;MQ0=11;QD=7.27;SB=-5.688e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:171,18,0 chrII 805343 . A T 136.13 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=12;QD=6.81;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:169,18,0 chrII 806034 . C T 215.01 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.51;MQ0=30;QD=4.48;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:27:248,27,0 chrII 806230 . G A 1532 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=20;QD=18.24;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1565,174,0 chrII 806262 . A C 2260 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=22.60;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2293,255,0 chrII 806401 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.59;MQ0=37;QD=0.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:6:52,6,0 chrII 806766 . T C 100.26 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.48;MQ0=30;QD=2.18;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,44:46:15:133,15,0 chrII 807151 . G C 177.03 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.00;MQ0=22;QD=4.66;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,36:38:24:210,24,0 chrII 807206 . A G 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=12;MQRankSum=-0.992;QD=3.66;ReadPosRankSum=1.240;SB=-5.230e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:15:128,15,0 chrII 807226 . A T 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;DP=50;Dels=0.00;FS=1.535;HaplotypeScore=2.5562;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=12;MQRankSum=1.242;QD=4.88;ReadPosRankSum=-1.027;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:27,23:50:99:274,0,163 chrII 807505 . A G 128.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=6;MQRankSum=-0.742;QD=9.86;ReadPosRankSum=0.742;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,12:13:18:161,18,0 chrII 807590 . G A 347 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=10;QD=9.91;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:42:380,42,0 chrII 807701 . A G 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;DP=56;Dels=0.00;FS=8.409;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=9;MQRankSum=-1.738;QD=2.64;ReadPosRankSum=-1.418;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:29,27:56:99:178,0,302 chrII 807720 . G A 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.738;DP=54;Dels=0.00;FS=7.058;HaplotypeScore=5.6787;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=13;MQRankSum=1.862;QD=3.87;ReadPosRankSum=0.639;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:24,29:54:89:239,0,89 chrII 807941 . G A 129.13 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=6;QD=4.61;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:18:162,18,0 chrII 807968 . T C 109.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;DP=34;Dels=0.00;FS=18.266;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=9;MQRankSum=1.304;QD=3.22;ReadPosRankSum=0.223;SB=-1.113e+02 GT:AD:DP:GQ:PL 0/1:13,21:34:1:138,0,1 chrII 807970 . T C 155.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=9;MQRankSum=-1.733;QD=4.43;ReadPosRankSum=1.600;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:21:188,21,0 chrII 807982 . A T 241.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;DP=40;Dels=0.00;FS=20.937;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=12;MQRankSum=0.780;QD=6.05;ReadPosRankSum=-2.219;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:15,25:40:9:274,9,0 chrII 808042 . A G 339 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=11;QD=11.69;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:372,42,0 chrII 808055 . G C 369 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=10;QD=13.67;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:402,45,0 chrII 808092 . A G 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;DP=32;Dels=0.00;FS=7.613;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=13;MQRankSum=2.916;QD=6.75;ReadPosRankSum=1.564;SB=-1.277e+02 GT:AD:DP:GQ:PL 0/1:11,21:32:99:246,0,116 chrII 808171 . A G 124.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=2;QD=15.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:18:157,18,0 chrII 808261 . G A 134.13 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=2;QD=7.89;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:167,18,0 chrII 808280 . C T 270 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.432;DP=25;Dels=0.00;FS=13.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=2;MQRankSum=0.678;QD=10.80;ReadPosRankSum=-1.734;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:1,24:25:36:303,36,0 chrII 808315 . T C 357 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.400;DP=29;Dels=0.00;FS=14.150;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=3;MQRankSum=1.200;QD=12.31;ReadPosRankSum=1.333;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:42:390,42,0 chrII 808401 . C T 832 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=23.11;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:90:865,90,0 chrII 808409 . A G 805 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=21.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:93:838,93,0 chrII 808441 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=1;QD=18.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:505,54,0 chrII 808510 . G A 170.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=4;MQRankSum=-1.739;QD=11.34;ReadPosRankSum=1.107;SB=-1.428e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:21:203,21,0 chrII 808515 . T A 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.181;DP=15;Dels=0.00;FS=26.646;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=4;MQRankSum=0.143;QD=5.80;ReadPosRankSum=1.932;SB=-2.753e+00 GT:AD:DP:GQ:PL 0/1:9,6:15:29:117,0,29 chrII 808627 . T G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=11;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.94;MQ0=6;MQRankSum=-1.231;QD=1.80;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,8:11:6:51,6,0 chrII 808874 . A C 128.13 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=5;QD=11.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:18:161,18,0 chrII 809010 . T C 907.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=14;MQRankSum=-0.388;QD=6.26;ReadPosRankSum=0.244;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:80,65:145:99:937,0,1122 chrII 809220 . T C 631 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=7;QD=18.56;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:72:664,72,0 chrII 809320 . G C 859 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=5;QD=12.27;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:892,102,0 chrII 809332 . C T 891 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=7;QD=12.37;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:924,108,0 chrII 809335 . C T 1075 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=7;QD=14.53;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1108,126,0 chrII 809468 . G A 129.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=23.6854;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=4;MQRankSum=0.678;QD=1.75;ReadPosRankSum=-1.732;SB=-4.501e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:18:162,18,0 chrII 809581 . G A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;DP=41;Dels=0.00;FS=16.217;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=7;MQRankSum=-0.035;QD=5.66;ReadPosRankSum=-1.075;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:18,23:41:99:262,0,225 chrII 809685 . A G 104.26 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.98;MQ0=6;QD=8.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:12:15:137,15,0 chrII 809691 . T C 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=14;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=7;MQRankSum=0.000;QD=5.07;ReadPosRankSum=1.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,9:14:39:101,0,39 chrII 809843 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;DP=46;Dels=0.00;FS=5.186;HaplotypeScore=3.9342;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=5;MQRankSum=1.327;QD=0.35;ReadPosRankSum=-2.325;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:27,19:46:46:46,0,135 chrII 810249 . A G 80.26 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.33;MQ0=2;QD=2.51;SB=-6.730e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:15:113,15,0 chrIII 274 . A C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=26.2878;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=8;MQRankSum=-1.281;QD=0.37;ReadPosRankSum=-0.887;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,5:27:40:40,0,193 chrIII 413 . C T 45.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=45;Dels=0.00;FS=11.357;HaplotypeScore=55.3556;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=1;MQRankSum=1.564;QD=1.01;ReadPosRankSum=-0.616;SB=-6.542e+01 GT:AD:DP:GQ:PL 0/1:25,20:45:7:75,0,7 chrIII 422 . T C 79.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.202;DP=52;Dels=0.00;FS=59.844;HaplotypeScore=44.7644;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=1;MQRankSum=-1.245;QD=1.52;ReadPosRankSum=4.120;SB=-6.527e+01 GT:AD:DP:GQ:PL 1/1:7,45:52:15:112,15,0 chrIII 458 . T C 130.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;DP=74;Dels=0.00;FS=31.384;HaplotypeScore=52.1219;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=3;MQRankSum=-0.088;QD=1.76;ReadPosRankSum=0.088;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:17,57:74:99:160,0,136 chrIII 467 . C T 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;DP=73;Dels=0.00;FS=16.634;HaplotypeScore=78.6885;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=4;MQRankSum=0.291;QD=1.37;ReadPosRankSum=2.382;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:57,16:73:99:130,0,206 chrIII 468 . G A 429 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=108.7382;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=4;QD=5.80;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:74:57:462,57,0 chrIII 473 . A G 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;DP=80;Dels=0.01;FS=16.389;HaplotypeScore=102.2542;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=5;MQRankSum=1.550;QD=1.11;ReadPosRankSum=2.574;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:66,13:79:99:119,0,207 chrIII 493 . T C 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;DP=78;Dels=0.00;FS=5.658;HaplotypeScore=42.3784;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=8;MQRankSum=0.708;QD=1.22;ReadPosRankSum=0.283;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:58,20:78:99:125,0,266 chrIII 519 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=54;Dels=0.00;FS=7.394;HaplotypeScore=43.7334;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=6;MQRankSum=-0.720;QD=0.39;ReadPosRankSum=-0.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,13:54:51:51,0,199 chrIII 544 . C T 151.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=23.4560;MLEAC=2;MLEAF=1.00;MQ=20.02;MQ0=5;MQRankSum=-2.186;QD=4.20;ReadPosRankSum=-0.312;SB=-1.319e+02 GT:AD:DP:GQ:PL 1/1:2,31:36:24:184,24,0 chrIII 550 . G A 105.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.016;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=27.1607;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=5;MQRankSum=-1.255;QD=2.92;ReadPosRankSum=0.896;SB=-1.317e+02 GT:AD:DP:GQ:PL 1/1:1,33:35:18:138,18,0 chrIII 717 . T A 35.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=11.6540;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=0;QD=2.00;SB=-7.796e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:9:68,9,0 chrIII 879 . G C 42.97 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=5;QD=1.59;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:9:75,9,0 chrIII 892 . C G 42.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=6;QD=1.65;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:4,22:26:9:75,9,0 chrIII 924 . C A 57.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;DP=27;Dels=0.00;FS=56.905;HaplotypeScore=3.8611;MLEAC=2;MLEAF=1.00;MQ=18.00;MQ0=4;MQRankSum=2.292;QD=2.13;ReadPosRankSum=1.259;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:10,16:27:12:90,12,0 chrIII 929 . A G 57.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=24;Dels=0.00;FS=29.863;HaplotypeScore=3.8611;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;MQRankSum=1.858;QD=2.40;ReadPosRankSum=0.206;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:7,16:24:12:90,12,0 chrIII 931 . A C 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=24;Dels=0.00;FS=4.393;HaplotypeScore=3.8611;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=2;MQRankSum=1.103;QD=1.46;ReadPosRankSum=1.576;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:9:67,9,0 chrIII 951 . C T 398 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=3;QD=10.21;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:54:431,54,0 chrIII 958 . A G 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=41;Dels=0.00;FS=11.306;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.96;MQ0=4;MQRankSum=1.320;QD=4.39;ReadPosRankSum=-1.479;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:27,14:41:99:210,0,105 chrIII 972 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;DP=44;Dels=0.00;FS=14.702;HaplotypeScore=15.3805;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=10;MQRankSum=-0.670;QD=0.30;ReadPosRankSum=1.441;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,12:44:43:43,0,249 chrIII 980 . A G 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.443;DP=43;Dels=0.00;FS=15.933;HaplotypeScore=17.7466;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=9;MQRankSum=0.517;QD=4.09;ReadPosRankSum=1.619;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:21,22:43:99:206,0,105 chrIII 1028 . C A 195 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=8.4202;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=8;QD=8.48;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:30:228,30,0 chrIII 1038 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.97;MQ0=9;MQRankSum=0.421;QD=2.11;ReadPosRankSum=2.017;SB=-2.021e+01 GT:AD:DP:GQ:PL 1/1:11,6:18:9:70,9,0 chrIII 1040 . T C 36.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=15;Dels=0.00;FS=3.979;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=8;MQRankSum=-0.731;QD=2.46;ReadPosRankSum=0.731;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:1,12:15:9:69,9,0 chrIII 1071 . C T 87.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.424;DP=18;Dels=0.00;FS=11.553;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.63;MQ0=5;MQRankSum=1.791;QD=4.85;ReadPosRankSum=3.016;SB=-4.026e+01 GT:AD:DP:GQ:PL 1/1:7,11:18:15:120,15,0 chrIII 1158 . G T 140.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.85;MQ0=0;QD=12.73;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:173,21,0 chrIII 1171 . C A 350 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=0;QD=17.50;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:383,45,0 chrIII 1218 . C T 520.02 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=39;Dels=0.00;FS=11.579;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=4;MQRankSum=-0.972;QD=13.33;ReadPosRankSum=-0.265;SB=-9.303e+01 GT:AD:DP:GQ:PL 1/1:5,34:39:25:553,25,0 chrIII 1261 . G A 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;DP=21;Dels=0.00;FS=5.825;HaplotypeScore=2.7419;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=5;MQRankSum=0.424;QD=0.91;ReadPosRankSum=-0.546;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:13,8:21:49:49,0,174 chrIII 1264 . G A 234 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=5;QD=11.14;SB=-1.069e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:267,30,0 chrIII 4072 . A C 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.237;DP=15;Dels=0.00;FS=26.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=0;MQRankSum=1.804;QD=1.32;ReadPosRankSum=2.526;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:12,3:15:6:51,6,0 chrIII 4077 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=2.59;SB=-7.698e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:76,9,0 chrIII 4090 . T C 162.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;MQRankSum=-0.510;QD=5.23;ReadPosRankSum=1.531;SB=-9.797e+01 GT:AD:DP:GQ:PL 1/1:1,16:31:24:195,24,0 chrIII 4171 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129;DP=50;Dels=0.00;FS=29.986;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.47;MQ0=1;MQRankSum=-3.268;QD=0.54;ReadPosRankSum=-2.082;SB=-3.900e+01 GT:AD:DP:GQ:PL 0/1:35,14:50:57:57,0,694 chrIII 4178 . G C,T 707.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.58;MQ0=1;QD=15.04;SB=-2.178e+02 GT:AD:DP:GQ:PL 1/2:0,16,31:47:99:767,590,566,177,0,100 chrIII 4184 . A C 807 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.41;MQ0=1;QD=17.17;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:99:840,102,0 chrIII 4186 . G A 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;DP=53;Dels=0.00;FS=43.403;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=33.06;MQ0=1;MQRankSum=-0.693;QD=3.47;ReadPosRankSum=0.511;SB=-1.349e+01 GT:AD:DP:GQ:PL 0/1:23,30:53:99:214,0,444 chrIII 4351 . T G 1722 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=2;QD=20.26;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1755,213,0 chrIII 4358 . C T 1511 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.042;DP=78;Dels=0.00;FS=5.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=2;MQRankSum=4.212;QD=19.37;ReadPosRankSum=-1.077;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:10,68:78:91:1544,91,0 chrIII 4360 . G T 1662 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=2;QD=21.58;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1695,201,0 chrIII 4395 . G A 501 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=2;QD=10.22;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:534,66,0 chrIII 4429 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=2.04;SB=-3.235e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:12:102,12,0 chrIII 4467 . A G 231.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;DP=63;Dels=0.00;FS=12.756;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=0;MQRankSum=-2.617;QD=3.67;ReadPosRankSum=1.952;SB=-3.340e+02 GT:AD:DP:GQ:PL 0/1:12,51:63:99:261,0,166 chrIII 4476 . G C 809 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;QD=11.24;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:842,108,0 chrIII 4489 . T C 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=17.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;MQRankSum=-2.290;QD=14.38;ReadPosRankSum=2.322;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1140,141,0 chrIII 4490 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;QD=15.36;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1354,167,0 chrIII 4526 . G A 2717 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.7297;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=1;QD=18.61;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2750,326,0 chrIII 4528 . C T 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.557;DP=146;Dels=0.00;FS=4.627;HaplotypeScore=2.7297;MLEAC=1;MLEAF=0.500;MQ=31.08;MQ0=1;MQRankSum=-3.855;QD=0.36;ReadPosRankSum=-0.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,32:146:83:83,0,1989 chrIII 4529 . A G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.332;DP=145;Dels=0.00;FS=4.586;HaplotypeScore=2.7297;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=1;MQRankSum=-3.943;QD=0.24;ReadPosRankSum=-0.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,32:145:65:65,0,2090 chrIII 4584 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DP=164;Dels=0.00;FS=59.445;HaplotypeScore=12.1048;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=2;MQRankSum=7.999;QD=10.59;ReadPosRankSum=2.573;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:61,102:164:62:1770,62,0 chrIII 4627 . C A 529 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=5;QD=6.45;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:66:562,66,0 chrIII 4641 . C T 403 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.088;DP=61;Dels=0.00;FS=57.225;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=5;MQRankSum=5.701;QD=6.61;ReadPosRankSum=-3.090;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:32,28:61:30:436,30,0 chrIII 4725 . C G 1105 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=20.85;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1138,138,0 chrIII 4730 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=22.20;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1276,141,0 chrIII 4757 . T C 1459 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=13;QD=18.24;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:5,75:80:99:1492,174,0 chrIII 4925 . T C 616.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=104;Dels=0.00;FS=34.342;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=11;MQRankSum=-0.598;QD=5.92;ReadPosRankSum=1.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,45:104:99:646,0,740 chrIII 4951 . T C 470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070;DP=89;Dels=0.00;FS=41.670;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=15;MQRankSum=0.513;QD=5.28;ReadPosRankSum=0.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,37:89:99:500,0,595 chrIII 4955 . T A 475.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.687;DP=89;Dels=0.00;FS=44.891;HaplotypeScore=5.6899;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=16;MQRankSum=-0.889;QD=5.34;ReadPosRankSum=0.160;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,36:89:99:505,0,529 chrIII 5093 . G T 362 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.7044;MLEAC=2;MLEAF=1.00;MQ=20.06;MQ0=32;MQRankSum=1.281;QD=6.46;ReadPosRankSum=1.281;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:2,53:56:45:395,45,0 chrIII 5140 . T G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;DP=66;Dels=0.00;FS=2.605;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=13.92;MQ0=44;MQRankSum=-0.950;QD=0.26;ReadPosRankSum=-0.619;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,14:66:47:47,0,160 chrIII 5207 . A G 563.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DP=117;Dels=0.00;FS=11.166;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=34.21;MQ0=35;MQRankSum=-0.450;QD=4.81;ReadPosRankSum=1.099;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:59,58:117:99:593,0,527 chrIII 5235 . C T 889.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.582;DP=128;Dels=0.00;FS=7.392;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=42.61;MQ0=13;MQRankSum=1.134;QD=6.95;ReadPosRankSum=-0.052;SB=-5.160e+02 GT:AD:DP:GQ:PL 0/1:54,74:128:99:919,0,699 chrIII 5266 . C T 1114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.051;DP=146;Dels=0.00;FS=5.038;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=46.42;MQ0=4;MQRankSum=-0.099;QD=7.63;ReadPosRankSum=1.877;SB=-6.020e+02 GT:AD:DP:GQ:PL 0/1:67,79:146:99:1144,0,932 chrIII 5277 . T A 891.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=151;Dels=0.00;FS=3.050;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=44.41;MQ0=12;MQRankSum=0.369;QD=5.90;ReadPosRankSum=-0.364;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:82,69:151:99:921,0,1103 chrIII 5520 . A C 535 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=28;QD=7.54;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:66:568,66,0 chrIII 5590 . T C 3164 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=184;Dels=0.00;FS=9.536;HaplotypeScore=8.2203;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=23;MQRankSum=1.032;QD=17.20;ReadPosRankSum=2.956;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:3,175:184:99:3197,378,0 chrIII 5629 . T C 2405 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=5;MQRankSum=1.703;QD=19.55;ReadPosRankSum=1.703;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2438,285,0 chrIII 5678 . T C 1582 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=7;MQRankSum=1.022;QD=18.18;ReadPosRankSum=1.688;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1615,186,0 chrIII 5684 . G A 1484 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=7;QD=19.27;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1517,171,0 chrIII 5828 . T C 710 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=18;QD=13.15;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:743,87,0 chrIII 5853 . A G 434 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=17;QD=9.64;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:467,54,0 chrIII 5904 . C T 916 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=20;QD=12.21;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:949,105,0 chrIII 5918 . C T 989 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=17;QD=13.01;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1022,114,0 chrIII 5960 . T A 1110 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=18;QD=13.54;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1143,129,0 chrIII 5975 . A G 928 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=12;MQRankSum=0.188;QD=13.07;ReadPosRankSum=2.367;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:2,69:71:99:961,114,0 chrIII 6009 . C T 874 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.146;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=7;MQRankSum=-1.359;QD=12.14;ReadPosRankSum=0.400;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,71:72:99:907,102,0 chrIII 6044 . T C 446.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.551;DP=90;Dels=0.00;FS=16.316;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.64;MQ0=6;MQRankSum=-0.422;QD=4.96;ReadPosRankSum=0.109;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:47,40:90:99:476,0,649 chrIII 6050 . G C 1471 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=5;QD=15.32;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1504,177,0 chrIII 6085 . C T 1680 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=103.5124;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=9;MQRankSum=0.033;QD=14.36;ReadPosRankSum=0.899;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1713,195,0 chrIII 6093 . T C 649.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DP=108;Dels=0.00;FS=5.215;HaplotypeScore=50.5308;MLEAC=1;MLEAF=0.500;MQ=35.88;MQ0=12;MQRankSum=0.156;QD=6.01;ReadPosRankSum=1.101;SB=-3.270e+02 GT:AD:DP:GQ:PL 0/1:54,51:108:99:679,0,508 chrIII 6129 . T C 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;DP=68;Dels=0.01;FS=2.354;HaplotypeScore=16.1921;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=10;MQRankSum=-0.008;QD=3.51;ReadPosRankSum=0.497;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:34,33:67:99:269,0,417 chrIII 6157 . T C 423 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=8;QD=10.07;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:456,54,0 chrIII 6190 . C T 197.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=3;QD=10.95;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:230,27,0 chrIII 6201 . A G 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;DP=17;Dels=0.00;FS=2.276;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.49;MQ0=3;MQRankSum=-1.109;QD=5.53;ReadPosRankSum=0.627;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:6,11:17:79:124,0,79 chrIII 6226 . G T 182.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=2;QD=13.00;SB=-1.339e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:24:215,24,0 chrIII 6243 . G T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=9.0155;MLEAC=1;MLEAF=0.500;MQ=29.86;MQ0=3;MQRankSum=-1.600;QD=1.35;ReadPosRankSum=-0.800;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:11,5:17:53:53,0,145 chrIII 6250 . C G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DP=14;Dels=0.00;FS=11.553;HaplotypeScore=6.7013;MLEAC=1;MLEAF=0.500;MQ=34.95;MQ0=1;MQRankSum=1.437;QD=1.36;ReadPosRankSum=-0.085;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:11,3:14:49:49,0,148 chrIII 6251 . C T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=15;Dels=0.00;FS=11.553;HaplotypeScore=7.6929;MLEAC=1;MLEAF=0.500;MQ=34.58;MQ0=1;MQRankSum=1.003;QD=1.54;ReadPosRankSum=-1.312;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:9,5:15:53:53,0,123 chrIII 6267 . C G 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=16;Dels=0.00;FS=6.410;HaplotypeScore=2.7669;MLEAC=1;MLEAF=0.500;MQ=37.20;MQ0=1;MQRankSum=-2.180;QD=2.81;ReadPosRankSum=1.473;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:7,9:16:75:75,0,124 chrIII 6268 . C T 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=17;Dels=0.00;FS=6.021;HaplotypeScore=2.7669;MLEAC=1;MLEAF=0.500;MQ=36.28;MQ0=1;MQRankSum=-2.549;QD=2.82;ReadPosRankSum=1.139;SB=-7.704e+01 GT:AD:DP:GQ:PL 0/1:7,10:17:78:78,0,126 chrIII 6279 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=18;Dels=0.00;FS=6.726;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=2;MQRankSum=-1.270;QD=2.33;ReadPosRankSum=2.117;SB=-7.404e+01 GT:AD:DP:GQ:PL 0/1:9,9:18:72:72,0,115 chrIII 6327 . C A 356 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=10;QD=7.74;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:48:389,48,0 chrIII 6337 . G A 390 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=12;QD=8.30;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,46:47:48:423,48,0 chrIII 6346 . C T 414 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=12;QD=9.20;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:447,51,0 chrIII 6389 . G A 421 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=15;QD=6.90;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:51:454,51,0 chrIII 6401 . G A 363 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=4.6343;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=14;QD=5.85;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:45:396,45,0 chrIII 6419 . T A 326 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;DP=60;Dels=0.00;FS=19.567;HaplotypeScore=17.7640;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=9;MQRankSum=-0.506;QD=5.43;ReadPosRankSum=3.052;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:7,53:60:42:359,42,0 chrIII 6445 . A T 41.97 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.04;FS=0.000;HaplotypeScore=47.9489;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=5;QD=0.78;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:9:74,9,0 chrIII 6489 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=33;Dels=0.00;FS=7.636;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=22.10;MQ0=0;MQRankSum=-1.094;QD=0.63;ReadPosRankSum=2.226;SB=-2.477e+01 GT:AD:DP:GQ:PL 1/1:2,31:33:6:52,6,0 chrIII 6493 . T C 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=37;Dels=0.00;FS=2.869;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=0;MQRankSum=0.034;QD=1.72;ReadPosRankSum=2.317;SB=-2.652e+01 GT:AD:DP:GQ:PL 1/1:2,35:37:12:96,12,0 chrIII 6499 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=1;QD=1.08;SB=-4.397e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:9:74,9,0 chrIII 6513 . C T 164.06 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.0669;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=2;QD=3.73;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:21:197,21,0 chrIII 6542 . A G 509 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=5;QD=9.09;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:542,63,0 chrIII 6557 . C T 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;DP=68;Dels=0.00;FS=14.381;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=7;MQRankSum=1.783;QD=2.59;ReadPosRankSum=-3.777;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:42,26:68:99:206,0,451 chrIII 6617 . G A 2226 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=4;QD=20.24;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2259,249,0 chrIII 6747 . C T 2612 filter AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=21.27;MQ0=41;QD=13.39;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,194:195:99:2645,303,0 chrIII 6788 . T C 449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DP=184;Dels=0.00;FS=1.987;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=16.17;MQ0=94;MQRankSum=-0.150;QD=2.44;ReadPosRankSum=1.587;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:95,89:184:99:479,0,457 chrIII 6977 . A G 606 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=30;QD=7.67;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,77:79:75:639,75,0 chrIII 7025 . A G 682 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=20.81;MQ0=27;QD=7.26;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:84:715,84,0 chrIII 7109 . T C 179.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.118;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=53;MQRankSum=-0.436;QD=1.39;ReadPosRankSum=-2.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,67:129:99:209,0,315 chrIII 7424 . C T 125.13 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=10;QD=7.36;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:18:158,18,0 chrIII 7787 . C T 1679 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=10;QD=19.99;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1712,195,0 chrIII 7940 . T C 496.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=72;Dels=0.00;FS=0.971;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=12;MQRankSum=-0.059;QD=6.89;ReadPosRankSum=2.589;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:33,39:72:99:526,0,397 chrIII 7952 . T C 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=1;MLEAF=0.500;MQ=24.96;MQ0=15;MQRankSum=1.135;QD=3.98;ReadPosRankSum=-2.373;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:45,38:84:99:364,0,493 chrIII 8006 . T C 914 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.01;MQ0=26;QD=9.72;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:947,111,0 chrIII 8027 . G A 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.714;DP=100;Dels=0.00;FS=8.685;HaplotypeScore=4.8593;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=22;MQRankSum=-1.727;QD=1.32;ReadPosRankSum=0.949;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:65,35:100:99:162,0,754 chrIII 8066 . C T 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.388;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=1;MLEAF=0.500;MQ=30.69;MQ0=25;MQRankSum=0.166;QD=0.94;ReadPosRankSum=-0.324;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:70,31:101:99:125,0,866 chrIII 8229 . G A 699.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.169;DP=105;Dels=0.00;FS=4.024;HaplotypeScore=5.6986;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=11;MQRankSum=0.265;QD=6.66;ReadPosRankSum=0.727;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:51,54:105:99:729,0,635 chrIII 8344 . T C 167.03 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=24.4799;MLEAC=2;MLEAF=1.00;MQ=26.30;MQ0=5;QD=4.18;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:24:200,24,0 chrIII 8396 . T C 981 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=108;Dels=0.00;FS=8.875;HaplotypeScore=7.2976;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=20;MQRankSum=0.714;QD=9.08;ReadPosRankSum=2.394;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1014,120,0 chrIII 8528 . T C 3009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.477;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=12.4283;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=3;MQRankSum=1.179;QD=20.06;ReadPosRankSum=-0.978;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3042,322,0 chrIII 8572 . T C 1303 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=17.5328;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=5;QD=17.85;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:73:99:1336,156,0 chrIII 8584 . A T 159.76 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.136;DP=48;Dels=0.00;FS=20.163;HaplotypeScore=22.7227;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=5;MQRankSum=1.045;QD=3.33;ReadPosRankSum=-3.285;SB=-8.455e+01 GT:AD:DP:GQ:PL 1/1:31,17:48:6:191,6,0 chrIII 8685 . C T 1399 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=16;QD=13.72;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1432,165,0 chrIII 8696 . G A 1073 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=17;QD=11.54;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1106,126,0 chrIII 8743 . C T 2131 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=15;QD=17.05;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2164,249,0 chrIII 8768 . G A 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=14;MQRankSum=-8.642;QD=1.20;ReadPosRankSum=-0.684;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:97,70:168:99:232,0,1963 chrIII 8774 . T C 2784 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=10;MQRankSum=1.084;QD=16.77;ReadPosRankSum=2.385;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,161:166:99:2817,336,0 chrIII 8775 . G A 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.834;DP=167;Dels=0.00;FS=0.646;HaplotypeScore=8.7986;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=10;MQRankSum=-8.334;QD=1.43;ReadPosRankSum=-0.269;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:96,69:167:99:268,0,1872 chrIII 8848 . A G 956.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.617;DP=148;Dels=0.00;FS=5.002;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=52.64;MQ0=4;MQRankSum=-2.340;QD=6.46;ReadPosRankSum=0.462;SB=-4.950e+02 GT:AD:DP:GQ:PL 0/1:70,78:148:99:986,0,1328 chrIII 8878 . C T 921.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.046;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.1892;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=3;MQRankSum=0.938;QD=8.22;ReadPosRankSum=0.601;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:55,55:112:99:951,0,800 chrIII 8940 . T C 346.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;DP=69;Dels=0.00;FS=19.667;HaplotypeScore=8.7645;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=3;MQRankSum=0.391;QD=5.01;ReadPosRankSum=0.096;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:33,36:69:99:376,0,443 chrIII 8947 . T G 964 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=3;QD=14.39;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:997,117,0 chrIII 9219 . T C 629.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.296;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=28.5954;MLEAC=1;MLEAF=0.500;MQ=38.98;MQ0=1;MQRankSum=1.540;QD=6.11;ReadPosRankSum=5.781;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:56,47:103:99:659,0,282 chrIII 9265 . G A 3830.01 filter AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=14;QD=20.93;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,179:183:99:3830,453,0 chrIII 9326 . T C 470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.0794;MLEAC=1;MLEAF=0.500;MQ=29.29;MQ0=16;MQRankSum=-0.007;QD=5.73;ReadPosRankSum=2.441;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:39,43:82:99:500,0,543 chrIII 9461 . G T 299 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=8;QD=11.07;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:39:332,39,0 chrIII 9675 . C T 599.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.578;DP=131;Dels=0.00;FS=0.781;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=32;MQRankSum=-1.414;QD=4.57;ReadPosRankSum=0.495;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:61,69:131:99:629,0,549 chrIII 9739 . A G 2484 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=142;Dels=0.00;FS=7.456;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=20;MQRankSum=-1.764;QD=17.49;ReadPosRankSum=2.409;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,140:142:99:2517,291,0 chrIII 9807 . A G 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;DP=63;Dels=0.00;FS=1.191;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=14;MQRankSum=-0.585;QD=3.59;ReadPosRankSum=1.458;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:31,31:63:99:256,0,290 chrIII 10164 . T C 1058 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.06;MQ0=23;QD=11.26;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1091,132,0 chrIII 10830 . C T 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;DP=80;Dels=0.00;FS=36.109;HaplotypeScore=4.0933;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=0;MQRankSum=5.312;QD=2.74;ReadPosRankSum=-1.526;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,14:80:99:249,0,547 chrIII 11312 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=3.57;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrIII 11341 . A G 228 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=19.00;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:261,30,0 chrIII 11382 . C A 603 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=20.10;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:636,72,0 chrIII 11416 . A G 570 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=20.36;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:69:603,69,0 chrIII 11417 . T C 538 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-0.208;QD=17.93;ReadPosRankSum=2.286;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:66:571,66,0 chrIII 11423 . C T 447 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=15.41;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:480,54,0 chrIII 11775 . G T 260 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=1;QD=8.97;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:293,33,0 chrIII 11782 . T A 285 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=4;QD=10.18;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:36:318,36,0 chrIII 13881 . C A 131.13 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.44;MQ0=57;QD=2.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,62:63:18:164,18,0 chrIII 13921 . C T 442 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=17.45;MQ0=65;QD=4.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:89:54:475,54,0 chrIII 13965 . G C 1191 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=41;QD=12.54;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1224,144,0 chrIII 14001 . C T 1394 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=4;QD=17.42;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1427,165,0 chrIII 14003 . C T 1494 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=2;QD=19.66;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1527,177,0 chrIII 14006 . G A 1513 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=2;QD=18.45;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1546,177,0 chrIII 14054 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=18.38;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1393,159,0 chrIII 14059 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=15.55;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1184,141,0 chrIII 14069 . G T 1022 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=16.22;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1055,120,0 chrIII 14112 . A T 346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=36;Dels=0.00;FS=17.490;HaplotypeScore=24.7076;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;MQRankSum=-1.866;QD=9.61;ReadPosRankSum=2.306;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:2,34:36:45:379,45,0 chrIII 14139 . G T 126.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=4.50;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:18:159,18,0 chrIII 14147 . A C 116.13 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=14.4976;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.47;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:18:149,18,0 chrIII 14185 . C T 142.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=7.10;SB=-7.907e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:21:175,21,0 chrIII 14191 . G A 152.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=6.34;SB=-2.131e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:185,21,0 chrIII 14222 . C T 434 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=12.76;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:467,57,0 chrIII 14289 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=16.8621;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=17.77;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1348,159,0 chrIII 14340 . A C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;MQRankSum=-1.251;QD=18.15;ReadPosRankSum=2.381;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1340,159,0 chrIII 14356 . A T 1008 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=15.51;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1041,126,0 chrIII 14399 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=19.24;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1091,123,0 chrIII 14479 . A G 488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-0.727;QD=15.74;ReadPosRankSum=1.621;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:63:521,63,0 chrIII 14489 . G T 468 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=16.14;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:501,57,0 chrIII 14490 . C T 407 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=14.03;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:440,51,0 chrIII 14584 . C T 348 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=15.82;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:381,45,0 chrIII 14589 . T C 380 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=16.52;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:413,48,0 chrIII 14619 . T C 179.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=12.79;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:212,24,0 chrIII 14620 . T C 182.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=13.00;SB=-5.204e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:215,24,0 chrIII 14631 . T A 155.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=17;Dels=0.00;FS=7.270;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-0.217;QD=9.12;ReadPosRankSum=1.519;SB=-5.707e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:21:188,21,0 chrIII 14693 . G T 656 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.87;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:689,78,0 chrIII 14751 . C A 912 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.71;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:945,105,0 chrIII 14793 . A G 871 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.77;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:904,105,0 chrIII 14817 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.47;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1128,129,0 chrIII 14924 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.70;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1254,150,0 chrIII 14934 . T A 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.420;QD=17.98;ReadPosRankSum=1.680;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1220,135,0 chrIII 14993 . C T 680 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=10.97;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:81:713,81,0 chrIII 15001 . C T 577 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=9.78;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:72:610,72,0 chrIII 15004 . G A 566 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=10.11;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:599,69,0 chrIII 15006 . G A 589 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=0;QD=10.52;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:622,72,0 chrIII 15033 . A C 489 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=39.8619;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=9.98;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:522,63,0 chrIII 15093 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=20.58;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1803,207,0 chrIII 15172 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2340;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.15;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,93:97:99:1988,225,0 chrIII 15182 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.86;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1900,216,0 chrIII 15259 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-0.270;QD=18.97;ReadPosRankSum=1.700;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2101,252,0 chrIII 15335 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=17.56;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2175,246,0 chrIII 15380 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=14.71;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1695,201,0 chrIII 15382 . A C 1677 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=15.11;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1710,201,0 chrIII 15394 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=13.29;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1335,150,0 chrIII 15398 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;QD=11.80;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1284,153,0 chrIII 15430 . T G 1539 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=89.5570;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=15.09;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1572,183,0 chrIII 15478 . T G 1653 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=15.45;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1686,198,0 chrIII 15488 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=14.23;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1470,171,0 chrIII 15510 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=16.55;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1258,144,0 chrIII 15528 . C A 1494 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.40;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1527,171,0 chrIII 15689 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.48;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1863,204,0 chrIII 15725 . T A 1910 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=20.32;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1943,216,0 chrIII 15816 . C T 860 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=17.55;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:893,105,0 chrIII 15960 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.91;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1141,129,0 chrIII 16356 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.42;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1357,159,0 chrIII 16578 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=18.44;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1490,180,0 chrIII 16587 . T A 1491 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.12;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1524,171,0 chrIII 16708 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.03;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1295,144,0 chrIII 16833 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.45;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1638,186,0 chrIII 17635 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.77;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2094,234,0 chrIII 17917 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.8756;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.12;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2002,237,0 chrIII 17997 . T A 2247 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.47;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2280,261,0 chrIII 18052 . A C 2466 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.62;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2499,294,0 chrIII 18173 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.02;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1691,189,0 chrIII 18277 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.93;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1665,192,0 chrIII 18342 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=14.78;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1422,171,0 chrIII 18393 . A G 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.490;QD=14.41;ReadPosRankSum=2.355;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1157,138,0 chrIII 18422 . A G 1674 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.81;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1707,201,0 chrIII 18582 . C G 655 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=14.89;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:688,81,0 chrIII 18613 . T G 101.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.241;QD=2.90;ReadPosRankSum=-0.591;SB=-1.064e+01 GT:AD:DP:GQ:PL 0/1:29,6:35:5:131,0,5 chrIII 18757 . G C 755 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.57;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:93:788,93,0 chrIII 19113 . T C 993 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.52;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1026,120,0 chrIII 19115 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=16.59;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1128,126,0 chrIII 19446 . A T 1795 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.40;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1828,210,0 chrIII 19506 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.70;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1166,132,0 chrIII 19596 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.84;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1094,129,0 chrIII 19605 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.50;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1254,141,0 chrIII 19830 . A G 1963 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.09;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1996,231,0 chrIII 19865 . G C 1382 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.32;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1415,168,0 chrIII 19887 . T A 1060 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.28;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1093,123,0 chrIII 20428 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.42;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1117,126,0 chrIII 20599 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1317,147,0 chrIII 20844 . G T 777 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.42;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:810,90,0 chrIII 20868 . T A 851 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.50;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:884,99,0 chrIII 21165 . T C 575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.473;QD=14.37;ReadPosRankSum=1.646;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:72:608,72,0 chrIII 21204 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.12;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1321,156,0 chrIII 21355 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2071,234,0 chrIII 21491 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.34;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1518,177,0 chrIII 21591 . C G 1336 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.29;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1369,162,0 chrIII 21650 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.33;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1719,201,0 chrIII 21827 . A C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=108;Dels=0.00;FS=11.165;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.161;QD=19.16;ReadPosRankSum=2.878;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2102,252,0 chrIII 21985 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=96;Dels=0.00;FS=3.025;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.459;QD=20.84;ReadPosRankSum=2.397;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:2,92:96:99:2034,234,0 chrIII 21998 . T A 1723 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.27;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1756,210,0 chrIII 22138 . G T 1243 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.03;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1276,150,0 chrIII 22182 . C T 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=5.963;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.531;QD=18.24;ReadPosRankSum=1.640;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1401,165,0 chrIII 22184 . A C 1333 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.87;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1366,165,0 chrIII 22203 . G A 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.725;QD=18.37;ReadPosRankSum=0.483;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1631,189,0 chrIII 22290 . C A 731 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=9.49;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:90:764,90,0 chrIII 22292 . C A 918 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=11.77;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:951,111,0 chrIII 22298 . A C 1041 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=2.624;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-2.474;QD=13.88;ReadPosRankSum=2.906;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1074,123,0 chrIII 22397 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.37;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1599,180,0 chrIII 23002 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.02;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1775,207,0 chrIII 23032 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.63;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2055,231,0 chrIII 23149 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.15;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1766,204,0 chrIII 23605 . A C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.451;QD=20.95;ReadPosRankSum=1.685;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1562,183,0 chrIII 24059 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.65;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2026,231,0 chrIII 24173 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.04;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1277,147,0 chrIII 24329 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=16.91;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1741,207,0 chrIII 24352 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=17.53;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1979,231,0 chrIII 24492 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=4.230;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.778;QD=19.65;ReadPosRankSum=1.697;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1998,234,0 chrIII 24520 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.11;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1742,207,0 chrIII 24607 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.73;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2164,246,0 chrIII 24833 . C G 1663 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5071;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.08;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1696,198,0 chrIII 24992 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.5146;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.41;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1450,165,0 chrIII 25125 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.51;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1184,132,0 chrIII 25218 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=15.46;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:945,111,0 chrIII 25355 . G T 1413 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.41;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1446,168,0 chrIII 25467 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.15;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:82:99:1603,192,0 chrIII 25689 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.61;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1212,141,0 chrIII 25808 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8279;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1892,213,0 chrIII 26164 . A G 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=3.522;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.412;QD=17.45;ReadPosRankSum=1.677;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1167,135,0 chrIII 26769 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.30;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1738,201,0 chrIII 26807 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.05;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1687,192,0 chrIII 27404 . T C 1110 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.62;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1143,138,0 chrIII 27573 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.74;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1372,153,0 chrIII 27651 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=25.7806;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.05;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:996,111,0 chrIII 27652 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=100.5169;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.07;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:892,105,0 chrIII 27717 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=14.62;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:925,108,0 chrIII 27724 . G C 853 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=14.71;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:886,105,0 chrIII 28072 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.40;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2152,255,0 chrIII 28362 . G A 1966 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.91;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1999,225,0 chrIII 28477 . A G 2869 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.07;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2902,336,0 chrIII 28543 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2496;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.21;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2300,261,0 chrIII 28567 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.26;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1643,183,0 chrIII 28570 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=14.30;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1420,165,0 chrIII 28597 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3681;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=14.51;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1194,132,0 chrIII 28720 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.0622;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.34;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1000,114,0 chrIII 29289 . A G 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.470;QD=17.47;ReadPosRankSum=2.302;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:2,49:51:99:924,108,0 chrIII 29373 . T G 684 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.29;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:717,84,0 chrIII 29477 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;DP=36;Dels=0.00;FS=2.529;HaplotypeScore=161.5793;MLEAC=1;MLEAF=0.500;MQ=36.70;MQ0=0;MQRankSum=0.759;QD=0.64;ReadPosRankSum=-3.726;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,10:36:53:53,0,93 chrIII 29511 . A C 523 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=12.16;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:43:66:556,66,0 chrIII 29668 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=12.91;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:330,36,0 chrIII 29700 . A G 250 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=8.62;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:283,33,0 chrIII 29722 . A G 255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=5.441;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;MQRankSum=-1.238;QD=9.11;ReadPosRankSum=1.609;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:33:288,33,0 chrIII 29724 . A T 282 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=9.72;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:36:315,36,0 chrIII 29747 . A G 438 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=8.26;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:57:471,57,0 chrIII 29755 . T C 487 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=8.54;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:63:520,63,0 chrIII 29774 . C T 774 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=12.29;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:93:807,93,0 chrIII 29830 . T A 1324 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.06;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1357,153,0 chrIII 29922 . A G 1236 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.91;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1269,147,0 chrIII 29925 . T G 1270 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7881;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.14;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1303,150,0 chrIII 29947 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9059;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=15.79;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1328,153,0 chrIII 30013 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=23.25;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1684,192,0 chrIII 30082 . G C 1608 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.48;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1641,189,0 chrIII 30101 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.83;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1620,183,0 chrIII 30188 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.85;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1451,168,0 chrIII 30246 . C A 1073 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.82;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1106,126,0 chrIII 30435 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.33;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1718,201,0 chrIII 30478 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=15.55;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:997,111,0 chrIII 30649 . G A 686 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.60;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:719,81,0 chrIII 30662 . A G 697 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.36;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:730,84,0 chrIII 30873 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=14.59;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1171,138,0 chrIII 31003 . T A 914 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.87;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:947,111,0 chrIII 31005 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.20;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:807,96,0 chrIII 31156 . A C 1249 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.15;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1282,147,0 chrIII 31227 . T A 1302 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8872;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.00;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1335,156,0 chrIII 31414 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.75;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1534,180,0 chrIII 32243 . G C 1543 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.73;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1576,186,0 chrIII 32547 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1850,219,0 chrIII 32927 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2221,258,0 chrIII 33140 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=16.82;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2220,261,0 chrIII 33425 . T A 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.059;QD=21.97;ReadPosRankSum=1.698;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2296,261,0 chrIII 33467 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.04;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1537,174,0 chrIII 33569 . A C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.378;QD=18.91;ReadPosRankSum=1.653;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1716,201,0 chrIII 33692 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2465,291,0 chrIII 33800 . C T 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.4377;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.484;QD=18.40;ReadPosRankSum=0.827;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2112,230,0 chrIII 33845 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.69;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1884,225,0 chrIII 33971 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.4675;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.87;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2410,276,0 chrIII 34008 . T C 3909.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.57;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,189:190:99:3909,456,0 chrIII 34127 . C A 2087 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.45;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2120,237,0 chrIII 34197 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.28;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1554,180,0 chrIII 34434 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.84;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1450,168,0 chrIII 34592 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.59;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1581,183,0 chrIII 34635 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.4868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2046,234,0 chrIII 34749 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.44;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1446,165,0 chrIII 34755 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.89;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1317,147,0 chrIII 34905 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.60;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1026,117,0 chrIII 35574 . G T 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.79;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1776,201,0 chrIII 35602 . G T 1689 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.48;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1722,195,0 chrIII 36579 . G C 1106 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=14.18;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1139,132,0 chrIII 36653 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.25;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2480,282,0 chrIII 36701 . A G 2721 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.43;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2754,324,0 chrIII 36813 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.575;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.099;QD=18.96;ReadPosRankSum=1.704;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2365,285,0 chrIII 36914 . T C 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=135;Dels=0.00;FS=2.946;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.294;QD=19.93;ReadPosRankSum=2.376;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2723,318,0 chrIII 37525 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.012;QD=18.61;ReadPosRankSum=2.286;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1987,228,0 chrIII 37664 . A G 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1103,132,0 chrIII 37731 . C T 906 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.13;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:939,108,0 chrIII 38022 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.21;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1437,162,0 chrIII 38178 . A G 2075 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.58;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2108,252,0 chrIII 38318 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.78;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1787,201,0 chrIII 38664 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.46;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1590,183,0 chrIII 38814 . T G 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=68;Dels=0.00;FS=3.216;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.560;QD=16.40;ReadPosRankSum=1.626;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,64:68:99:1148,135,0 chrIII 39123 . A T 1304 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.37;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1337,156,0 chrIII 39265 . T C 2598 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.46;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2631,303,0 chrIII 39326 . T G 2344 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.91;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2377,276,0 chrIII 39512 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=87;Dels=0.00;FS=5.347;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=-2.584;QD=17.83;ReadPosRankSum=3.354;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:99:1584,183,0 chrIII 39524 . G C 1547 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=19.83;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1580,180,0 chrIII 39525 . A C 1517 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;QD=19.45;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1550,180,0 chrIII 39539 . T A 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=5.071;HaplotypeScore=5.1569;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=-1.193;QD=17.92;ReadPosRankSum=1.694;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1646,186,0 chrIII 39540 . C A 1702 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.1569;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=18.70;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1735,195,0 chrIII 39552 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=19.19;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1818,210,0 chrIII 39924 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.35;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,159,0 chrIII 39967 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.60;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1070,129,0 chrIII 40089 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.25;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1603,177,0 chrIII 40109 . C A 1782 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=14.73;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1815,210,0 chrIII 40144 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=16.48;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2093,234,0 chrIII 40158 . T C 1994 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=15.83;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2027,240,0 chrIII 40374 . G C 1165 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.18;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1198,141,0 chrIII 40410 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=14.86;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1133,132,0 chrIII 40515 . G C 1667 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.84;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1700,198,0 chrIII 40583 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.56;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1258,141,0 chrIII 40987 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.58;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1954,237,0 chrIII 41007 . T G 1036 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.50;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1069,123,0 chrIII 41015 . T C 885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.018;QD=15.26;ReadPosRankSum=2.739;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:99:918,108,0 chrIII 41281 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.68;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2158,252,0 chrIII 41494 . A T 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=3.300;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.168;QD=20.30;ReadPosRankSum=1.676;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1332,150,0 chrIII 41756 . T C 565 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=12.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:69:598,69,0 chrIII 41847 . C T 591 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.06;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:624,69,0 chrIII 41852 . T C 520 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.26;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:63:553,63,0 chrIII 42698 . C G 1340 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.27;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1373,162,0 chrIII 42728 . A C 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.24;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1255,147,0 chrIII 42761 . A C 1441 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.21;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1474,171,0 chrIII 43107 . T G 1363 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.97;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1396,168,0 chrIII 43280 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.65;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1279,153,0 chrIII 43304 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.70;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1270,147,0 chrIII 43346 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.60;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1209,135,0 chrIII 43513 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.54;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1049,117,0 chrIII 43528 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=15.58;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1170,141,0 chrIII 43618 . C T 230 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=28.7812;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=2.64;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:30:263,30,0 chrIII 43844 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.84;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1250,141,0 chrIII 43874 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.11;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1011,120,0 chrIII 43877 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.18;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1088,123,0 chrIII 45145 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.77;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1197,141,0 chrIII 45495 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.99;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1490,168,0 chrIII 45512 . T A 1281 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.04;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1314,150,0 chrIII 45755 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.76;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2607,294,0 chrIII 45811 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.59;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,89:95:99:1989,225,0 chrIII 45906 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.09;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1579,180,0 chrIII 46119 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2392,267,0 chrIII 46258 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.92;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2104,243,0 chrIII 46458 . T C 2545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=136;Dels=0.00;FS=16.018;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.831;QD=18.71;ReadPosRankSum=3.239;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:4,132:136:99:2578,297,0 chrIII 46562 . T A 2993 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.85;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3026,333,0 chrIII 47306 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.29;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1306,147,0 chrIII 47501 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.90;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1071,123,0 chrIII 47918 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.40;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1430,168,0 chrIII 48029 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.73;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1513,177,0 chrIII 48544 . A G 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.4131;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.834;QD=17.81;ReadPosRankSum=1.228;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1226,123,0 chrIII 48704 . A G 906 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-4.061;DP=108;Dels=0.00;FS=2.381;HaplotypeScore=44.5385;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=1.024;QD=8.39;ReadPosRankSum=-3.533;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:14,63:108:99:939,114,0 chrIII 48707 . G A 740 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.322;DP=102;Dels=0.00;FS=8.082;HaplotypeScore=33.4505;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;MQRankSum=1.729;QD=7.25;ReadPosRankSum=-7.089;SB=-9.400e+01 GT:AD:DP:GQ:PL 1/1:46,55:102:90:773,90,0 chrIII 48713 . C G 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.913;DP=59;Dels=0.00;FS=10.103;HaplotypeScore=17.4175;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=0;MQRankSum=5.105;QD=1.41;ReadPosRankSum=-5.194;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:45,14:59:45:113,0,45 chrIII 49436 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.1382;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.73;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1494,177,0 chrIII 49571 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.59;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2298,264,0 chrIII 49655 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.36;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1796,204,0 chrIII 50099 . G A 350 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=11.29;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:45:383,45,0 chrIII 50269 . A G 883 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.66;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:916,105,0 chrIII 50543 . T A 377 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=19.9298;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.95;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:410,45,0 chrIII 50560 . C T 338 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=12.07;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:42:371,42,0 chrIII 50675 . T C 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.624;QD=15.12;ReadPosRankSum=1.595;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:48:411,48,0 chrIII 51332 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.75;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2004,225,0 chrIII 51392 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2322,273,0 chrIII 51454 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.8134;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=17.12;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1762,198,0 chrIII 51491 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=15.95;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1692,198,0 chrIII 51494 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=16.54;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1786,204,0 chrIII 51635 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2099,237,0 chrIII 51852 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=17.33;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1749,204,0 chrIII 52043 . A G 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=2.925;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.156;QD=15.11;ReadPosRankSum=2.381;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1106,132,0 chrIII 52208 . C T 652 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.58;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:78:685,78,0 chrIII 52238 . A G 671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.141;QD=16.37;ReadPosRankSum=1.648;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:704,81,0 chrIII 52365 . G C 461 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=9.60;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:57:494,57,0 chrIII 52383 . T C 403 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=9.83;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:51:436,51,0 chrIII 52456 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.224;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.762;QD=21.12;ReadPosRankSum=-1.178;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1617,167,0 chrIII 52606 . A T 944 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:977,111,0 chrIII 52699 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.56;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2248,249,0 chrIII 52716 . T C 1835 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.73;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1868,225,0 chrIII 52747 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=17.85;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1586,186,0 chrIII 52762 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.85;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1586,177,0 chrIII 52792 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.04;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1461,174,0 chrIII 53286 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=16.47;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1565,183,0 chrIII 53706 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6478;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.44;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1515,177,0 chrIII 53817 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.87;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2266,255,0 chrIII 53891 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.171;QD=17.03;ReadPosRankSum=1.694;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1583,186,0 chrIII 53916 . C A 1459 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=15.86;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1492,168,0 chrIII 54441 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.99;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1992,228,0 chrIII 54535 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.28;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2061,240,0 chrIII 54588 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.60;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:77:99:1542,177,0 chrIII 54609 . A C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.336;QD=19.24;ReadPosRankSum=1.683;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1418,165,0 chrIII 54721 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.32;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1589,180,0 chrIII 54831 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.73;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1327,153,0 chrIII 54914 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=16.06;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1366,162,0 chrIII 54959 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.988;HaplotypeScore=8.3464;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=0.084;QD=15.53;ReadPosRankSum=1.690;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1322,162,0 chrIII 55042 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1230;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.08;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1860,207,0 chrIII 55097 . G C 2001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.23;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2034,240,0 chrIII 55133 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.17;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1887,216,0 chrIII 55716 . A G 1444 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.93;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1477,174,0 chrIII 56377 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.18;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1644,183,0 chrIII 56411 . G C 1412 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=16.81;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1445,171,0 chrIII 56432 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.91;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1681,198,0 chrIII 56873 . G A 345 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.68;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:378,42,0 chrIII 56979 . G A 176.03 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:209,24,0 chrIII 57303 . A G 313 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=14.23;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,18:22:42:346,42,0 chrIII 57542 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.17;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1566,183,0 chrIII 57713 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=82;Dels=0.00;FS=2.970;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.759;QD=18.49;ReadPosRankSum=2.390;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1549,180,0 chrIII 57843 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.9866;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.66;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2422,273,0 chrIII 58424 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1409,162,0 chrIII 58975 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=16.82;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1547,177,0 chrIII 58978 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=16.21;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1476,165,0 chrIII 59117 . C A 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.763;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.378;QD=20.57;ReadPosRankSum=-0.079;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1864,213,0 chrIII 59171 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1375,162,0 chrIII 59589 . A G 1018 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.96;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1051,126,0 chrIII 60018 . T C 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.069;QD=19.51;ReadPosRankSum=1.686;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1496,174,0 chrIII 60198 . T C 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.403;QD=21.41;ReadPosRankSum=1.652;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1874,222,0 chrIII 60354 . C G 1834 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2779;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.08;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1867,213,0 chrIII 60463 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=15.34;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1874,222,0 chrIII 60687 . T C 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=7.709;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.380;QD=18.10;ReadPosRankSum=1.615;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1101,132,0 chrIII 60880 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.29;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1758,210,0 chrIII 61892 . C T 1849 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.26;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1882,210,0 chrIII 61894 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.67;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1800,210,0 chrIII 61954 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.03;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2279,255,0 chrIII 62032 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.24;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1457,165,0 chrIII 62244 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=17.58;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1897,213,0 chrIII 62386 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.82;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1459,174,0 chrIII 62698 . T A 963 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=11.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:996,114,0 chrIII 62748 . C T 275 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.972;DP=47;Dels=0.00;FS=16.128;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.648;QD=5.85;ReadPosRankSum=-0.718;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,44:47:42:308,42,0 chrIII 63257 . A G 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.682;QD=18.59;ReadPosRankSum=1.707;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2617,300,0 chrIII 63402 . G C 2159 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.59;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2192,255,0 chrIII 63611 . T C 2015 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.49;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2048,237,0 chrIII 63845 . G C 2287 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.9383;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.79;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2320,270,0 chrIII 63878 . C G 2142 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.12;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2175,252,0 chrIII 63929 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.30;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1698,201,0 chrIII 64304 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.55;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:928,111,0 chrIII 65119 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.92;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1721,201,0 chrIII 65266 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.85;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1854,213,0 chrIII 65398 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.20;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2053,231,0 chrIII 65571 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.15;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1648,186,0 chrIII 65580 . C G 1443 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.40;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1476,171,0 chrIII 66138 . G C 1823 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.26;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1856,219,0 chrIII 66156 . A G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.896;QD=18.52;ReadPosRankSum=1.653;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1644,192,0 chrIII 66477 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.21;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1617,192,0 chrIII 66483 . C T 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.366;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.564;QD=18.18;ReadPosRankSum=-0.409;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1651,189,0 chrIII 66516 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.74;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1492,171,0 chrIII 66534 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.055;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.275;QD=13.59;ReadPosRankSum=2.371;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1310,153,0 chrIII 67080 . A G 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.422;QD=19.04;ReadPosRankSum=1.681;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1309,156,0 chrIII 67277 . G A 910 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.20;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:943,108,0 chrIII 67347 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.07;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1139,129,0 chrIII 67668 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.08;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1388,165,0 chrIII 67820 . T C 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=69;Dels=0.00;FS=5.730;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.622;QD=16.03;ReadPosRankSum=2.895;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:3,64:69:99:1139,132,0 chrIII 67844 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=13.31;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:925,105,0 chrIII 67854 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=11.95;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:917,108,0 chrIII 67872 . G T 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.203;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.678;QD=13.03;ReadPosRankSum=-0.452;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1232,138,0 chrIII 68046 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.02;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1412,168,0 chrIII 68058 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.64;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1514,174,0 chrIII 68070 . T G 1380 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.43;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1413,162,0 chrIII 68095 . G C 1078 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=15.18;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1111,129,0 chrIII 68424 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.95;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2567,288,0 chrIII 68443 . A G 2466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.317;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.596;QD=19.42;ReadPosRankSum=1.705;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2499,300,0 chrIII 68852 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2780;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.160;QD=19.21;ReadPosRankSum=1.668;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2127,249,0 chrIII 68956 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=132;Dels=0.00;FS=3.144;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.026;QD=19.02;ReadPosRankSum=1.706;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2543,297,0 chrIII 69091 . A G 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=5.975;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.237;QD=22.31;ReadPosRankSum=1.696;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2152,261,0 chrIII 69652 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;DP=129;Dels=0.00;FS=6.333;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=2.027;QD=16.28;ReadPosRankSum=2.411;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2133,252,0 chrIII 69718 . A G 2483 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.6761;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.61;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2516,288,0 chrIII 70491 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.81;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1885,225,0 chrIII 70770 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0835;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.00;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1563,183,0 chrIII 70785 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.66;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1746,195,0 chrIII 70838 . A G 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.027;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.780;QD=19.82;ReadPosRankSum=1.656;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1856,216,0 chrIII 71035 . A T 1744 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=16.77;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1777,204,0 chrIII 71036 . A C 1791 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.39;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1824,210,0 chrIII 71043 . G A 1648 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.32;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1681,192,0 chrIII 71079 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=14.27;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1160,135,0 chrIII 71223 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.93;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:957,108,0 chrIII 71229 . G C 858 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=14.07;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:891,105,0 chrIII 71247 . C T 749 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=12.08;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:782,93,0 chrIII 71298 . G C 902 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=16.11;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:935,108,0 chrIII 71636 . T A 763 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.12;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:796,90,0 chrIII 71690 . T C 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.843;QD=20.07;ReadPosRankSum=2.844;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:3,42:45:99:936,111,0 chrIII 71709 . G A 930 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.67;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:963,108,0 chrIII 71985 . G T 1187 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.46;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1220,138,0 chrIII 72190 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=15.50;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1273,153,0 chrIII 72214 . A G 1261 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=17.27;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1294,150,0 chrIII 72786 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2570;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.148;QD=17.91;ReadPosRankSum=1.654;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1645,195,0 chrIII 72839 . A G 1982 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.43;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2015,234,0 chrIII 73095 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2720,306,0 chrIII 73233 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.92;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1607,192,0 chrIII 73251 . G T 1923 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.14;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1956,225,0 chrIII 73255 . T A 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=110;Dels=0.00;FS=4.206;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.674;QD=15.85;ReadPosRankSum=1.636;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1776,204,0 chrIII 73335 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.63;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2828,324,0 chrIII 74002 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.27;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2040,237,0 chrIII 74031 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.46;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2007,228,0 chrIII 74074 . T C 2125 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.10;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2158,255,0 chrIII 74124 . C T 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.742;QD=21.10;ReadPosRankSum=1.633;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1510,171,0 chrIII 74202 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.19;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1453,165,0 chrIII 74234 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.62;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1784,198,0 chrIII 74290 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.76;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1073,123,0 chrIII 74327 . C A 1131 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.14;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1164,135,0 chrIII 74346 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=15.39;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1126,135,0 chrIII 74361 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=15.87;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1160,138,0 chrIII 74393 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.88;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1081,123,0 chrIII 74505 . C T 716 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=13.02;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:749,87,0 chrIII 74572 . A C 1451 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.44;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1484,177,0 chrIII 74633 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.15;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1408,162,0 chrIII 74673 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0259;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.01;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1383,162,0 chrIII 74692 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.07;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1529,174,0 chrIII 74783 . G C 1404 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.77;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1437,168,0 chrIII 74881 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.80;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1925,216,0 chrIII 75546 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.09;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1372,159,0 chrIII 75863 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.96;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1686,192,0 chrIII 76147 . T G 1558 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.23;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1591,192,0 chrIII 76426 . A G 2442 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.87;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2475,291,0 chrIII 76973 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.32;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:65:99:1354,150,0 chrIII 77317 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.48;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1260,150,0 chrIII 77505 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.31;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1495,174,0 chrIII 77596 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=15.67;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1631,195,0 chrIII 77645 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.627;QD=19.45;ReadPosRankSum=1.695;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1861,219,0 chrIII 77849 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.90;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1250,141,0 chrIII 77866 . T A 1182 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2505;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.13;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1215,138,0 chrIII 77900 . A G 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.986;QD=17.06;ReadPosRankSum=1.626;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1142,135,0 chrIII 77957 . T C 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;DP=101;Dels=0.00;FS=15.727;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.824;QD=20.42;ReadPosRankSum=3.687;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:5,96:101:99:2095,243,0 chrIII 78705 . G T 1515 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.47;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1548,174,0 chrIII 78951 . A T 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=6.755;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.346;QD=13.81;ReadPosRankSum=1.578;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1276,144,0 chrIII 78952 . A T 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=6.755;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-0.616;QD=13.74;ReadPosRankSum=1.617;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1270,144,0 chrIII 79096 . G T 2257 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.7377;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.50;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2290,267,0 chrIII 79170 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.08;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2001,240,0 chrIII 79297 . A C 1458 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=16.02;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1491,180,0 chrIII 79460 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8766;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.93;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1770,204,0 chrIII 79578 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=13.4760;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=14.01;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:94:99:1350,159,0 chrIII 79617 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.15;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1319,153,0 chrIII 79758 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.34;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:840,99,0 chrIII 79797 . T C 1015 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1048,123,0 chrIII 80460 . G C 1606 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1639,192,0 chrIII 80844 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.08;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1388,168,0 chrIII 81561 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=16.49;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1369,156,0 chrIII 81569 . C A 1208 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=15.29;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1241,144,0 chrIII 81693 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1235,141,0 chrIII 81797 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=16.23;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1445,162,0 chrIII 81816 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=14.72;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1211,135,0 chrIII 81829 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=11.39;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:887,102,0 chrIII 81853 . T G 620 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=8.86;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:78:653,78,0 chrIII 81869 . A G 526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=2.728;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.649;QD=8.92;ReadPosRankSum=2.367;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:66:559,66,0 chrIII 81903 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=15.72;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1102,132,0 chrIII 82315 . G A 293 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=11.27;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:36:326,36,0 chrIII 82554 . T C 70.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:103,12,0 chrIII 82623 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=6.19;SB=-2.980e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:56,6,0 chrIII 82632 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=14.32;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:75,9,0 chrIII 82889 . C G 47.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrIII 83134 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.65;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1094,129,0 chrIII 83262 . T C 798 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.95;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:96:831,96,0 chrIII 83307 . T C 593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=-0.963;QD=16.47;ReadPosRankSum=0.770;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:72:626,72,0 chrIII 83309 . T C 598 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.74;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:631,75,0 chrIII 83503 . C G 1047 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.6914;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.39;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1080,126,0 chrIII 83546 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.23;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1218,141,0 chrIII 83597 . G T 1572 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.83;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1605,180,0 chrIII 83706 . T C 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;MQRankSum=0.029;QD=18.20;ReadPosRankSum=1.674;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1107,132,0 chrIII 83824 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=22.03;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1553,183,0 chrIII 83946 . C G 1239 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=19.06;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1272,150,0 chrIII 84023 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;QD=18.88;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1713,201,0 chrIII 84024 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;QD=19.59;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1757,201,0 chrIII 84048 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=24.7584;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=18.62;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1299,150,0 chrIII 84097 . C T 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=5;MQRankSum=1.082;QD=2.00;ReadPosRankSum=-3.855;SB=-7.206e-03 GT:AD:DP:GQ:PL 0/1:20,10:30:35:90,0,35 chrIII 84099 . A G 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=5;MQRankSum=0.749;QD=1.73;ReadPosRankSum=-2.912;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:20,10:30:31:82,0,31 chrIII 84103 . A G 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=5;MQRankSum=-0.290;QD=1.74;ReadPosRankSum=-0.712;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:21,10:31:59:84,0,59 chrIII 84109 . T C 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=5;MQRankSum=-0.465;QD=1.86;ReadPosRankSum=-0.155;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:18,10:28:56:82,0,56 chrIII 84111 . C T 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.752;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=5;MQRankSum=-0.279;QD=2.18;ReadPosRankSum=1.085;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:18,10:28:54:91,0,54 chrIII 84112 . G C 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=5;MQRankSum=0.033;QD=2.11;ReadPosRankSum=1.022;SB=-6.526e-03 GT:AD:DP:GQ:PL 0/1:17,10:27:55:87,0,55 chrIII 84114 . T C 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=5;MQRankSum=-1.096;QD=2.19;ReadPosRankSum=1.172;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:16,10:26:33:87,0,33 chrIII 84116 . C G 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=5;MQRankSum=-1.776;QD=2.04;ReadPosRankSum=1.474;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:15,10:25:59:81,0,59 chrIII 84117 . T C 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=5;MQRankSum=0.340;QD=2.12;ReadPosRankSum=1.474;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:15,10:25:56:83,0,56 chrIII 84133 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=5;MQRankSum=-0.959;QD=2.74;ReadPosRankSum=0.700;SB=-5.835e-03 GT:AD:DP:GQ:PL 0/1:11,24:35:59:126,0,59 chrIII 84140 . T A 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=-0.427;QD=3.18;ReadPosRankSum=-1.018;SB=1.11 GT:AD:DP:GQ:PL 0/1:9,24:33:50:135,0,50 chrIII 84143 . A G 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=1.018;QD=2.94;ReadPosRankSum=1.149;SB=1.18 GT:AD:DP:GQ:PL 0/1:9,24:33:56:127,0,56 chrIII 84144 . A T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=0.295;QD=3.21;ReadPosRankSum=1.149;SB=0.528 GT:AD:DP:GQ:PL 0/1:9,24:33:52:136,0,52 chrIII 84147 . T C 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=-0.361;QD=2.79;ReadPosRankSum=1.543;SB=1.11 GT:AD:DP:GQ:PL 0/1:9,24:33:53:122,0,53 chrIII 84149 . A G 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=5;MQRankSum=0.952;QD=2.79;ReadPosRankSum=1.543;SB=1.11 GT:AD:DP:GQ:PL 0/1:9,24:33:53:122,0,53 chrIII 84152 . C T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=5;MQRankSum=-1.251;QD=2.69;ReadPosRankSum=1.190;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:9,26:35:53:124,0,53 chrIII 84161 . A G 175.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.625;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=3;MQRankSum=-1.733;QD=5.00;ReadPosRankSum=-0.650;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:4,31:35:3:205,3,0 chrIII 84165 . A G 162.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.040;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=3;MQRankSum=-0.523;QD=4.77;ReadPosRankSum=0.925;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:5,29:34:3:192,3,0 chrIII 84166 . T C 178.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=3;MQRankSum=-1.733;QD=5.41;ReadPosRankSum=-0.347;SB=-2.550e+00 GT:AD:DP:GQ:PL 1/1:4,29:33:4:209,4,0 chrIII 84179 . T C 146.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=3;MQRankSum=-1.733;QD=3.96;ReadPosRankSum=0.204;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:4,33:37:2:176,2,0 chrIII 84181 . G A 113.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=3;MQRankSum=-1.733;QD=3.07;ReadPosRankSum=0.714;SB=-3.654e+00 GT:AD:DP:GQ:PL 0/1:4,33:37:5:143,0,5 chrIII 84190 . G A 160.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=-1.733;QD=4.45;ReadPosRankSum=1.348;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,35:36:21:193,21,0 chrIII 84194 . C T 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;MQRankSum=-1.733;QD=4.44;ReadPosRankSum=1.631;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,33:34:21:184,21,0 chrIII 84195 . A G 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=1;MQRankSum=-1.733;QD=4.03;ReadPosRankSum=1.631;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,33:35:21:174,21,0 chrIII 84204 . G A 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=1.609;QD=4.97;ReadPosRankSum=1.609;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,27:31:21:187,21,0 chrIII 84205 . A G 144.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=1.609;QD=4.65;ReadPosRankSum=1.609;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,27:31:21:177,21,0 chrIII 84208 . A G 152.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=1.609;QD=4.91;ReadPosRankSum=1.609;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,27:31:21:185,21,0 chrIII 84209 . T A 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=31;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=1.609;QD=4.94;ReadPosRankSum=1.486;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,27:31:21:186,21,0 chrIII 84216 . G A 146.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DP=30;Dels=0.00;FS=14.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.00;MQ0=3;MQRankSum=1.605;QD=4.87;ReadPosRankSum=-1.733;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:4,26:30:21:179,21,0 chrIII 84420 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;DP=38;Dels=0.00;FS=14.780;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=6;MQRankSum=2.222;QD=0.42;ReadPosRankSum=-1.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,21:38:46:46,0,164 chrIII 84430 . G A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=37;Dels=0.00;FS=17.285;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=6;MQRankSum=1.588;QD=0.54;ReadPosRankSum=-0.762;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:15,22:37:50:50,0,150 chrIII 84431 . A G 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;DP=36;Dels=0.00;FS=16.842;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=6;MQRankSum=2.942;QD=0.47;ReadPosRankSum=-0.724;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:47:47,0,158 chrIII 84434 . A G 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=36;Dels=0.00;FS=16.842;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=6;MQRankSum=2.037;QD=0.56;ReadPosRankSum=-0.498;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:50:50,0,156 chrIII 84435 . T A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=36;Dels=0.00;FS=16.842;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=6;MQRankSum=1.810;QD=0.56;ReadPosRankSum=-0.543;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:15,21:36:50:50,0,154 chrIII 84442 . G A 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;DP=35;Dels=0.00;FS=16.842;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=5;MQRankSum=1.131;QD=0.74;ReadPosRankSum=-0.588;SB=-3.079e-03 GT:AD:DP:GQ:PL 0/1:14,21:35:56:56,0,106 chrIII 84495 . A G 69.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:102,12,0 chrIII 84552 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrIII 84735 . C T 723 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=22.59;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:756,87,0 chrIII 86360 . C T 309 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5528;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=38;QD=3.72;SB=-7.610e-03 GT:AD:DP:GQ:PL 1/1:0,82:83:39:342,39,0 chrIII 86365 . T C 225.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3972;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=35;MQRankSum=0.433;QD=2.75;ReadPosRankSum=1.625;SB=12.82 GT:AD:DP:GQ:PL 1/1:1,51:82:30:258,30,0 chrIII 86403 . A G 66.51 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.20;MQ0=8;QD=2.08;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,31:32:12:99,12,0 chrIII 86409 . A G 64.51 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=3;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:12:97,12,0 chrIII 86420 . C A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=1;QD=1.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:56,6,0 chrIII 86427 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.57;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrIII 86431 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=0;QD=1.49;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrIII 86692 . T C 439 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=128;Dels=0.00;FS=35.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=99;MQRankSum=2.757;QD=3.43;ReadPosRankSum=2.757;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:3,124:128:54:472,54,0 chrIII 86728 . A G 1336 filter AC=2;AF=1.00;AN=2;DP=301;Dels=0.00;FS=0.000;HaplotypeScore=15.2792;MLEAC=2;MLEAF=1.00;MQ=17.56;MQ0=99;QD=4.44;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,298:300:99:1369,162,0 chrIII 86810 . T G 696 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=4.3734;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=22;QD=7.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:93:90:729,90,0 chrIII 86812 . G A 327 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=15.94;MQ0=22;MQRankSum=-2.141;QD=4.19;ReadPosRankSum=1.832;SB=0.968 GT:AD:DP:GQ:PL 1/1:2,76:78:42:360,42,0 chrIII 86815 . C A 375 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=14.47;MQ0=23;MQRankSum=-2.401;QD=5.14;ReadPosRankSum=2.352;SB=0.021 GT:AD:DP:GQ:PL 1/1:2,70:73:48:408,48,0 chrIII 86959 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.97;MQ0=17;QD=2.09;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:9:80,9,0 chrIII 87001 . T C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.88;MQ0=99;MQRankSum=1.436;QD=0.27;ReadPosRankSum=0.000;SB=-6.736e-03 GT:AD:DP:GQ:PL 0/1:48,77:125:40:64,0,40 chrIII 87118 . A T 499 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=11.94;MQ0=80;MQRankSum=-1.255;QD=2.64;ReadPosRankSum=1.700;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,188:189:60:532,60,0 chrIII 87175 . C A 168.03 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.54;MQ0=18;QD=3.00;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,56:56:24:201,24,0 chrIII 87190 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.14;MQ0=9;QD=0.89;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:6:48,6,0 chrIII 87202 . C A 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.84;MQ0=4;QD=1.44;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:44,6,0 chrIII 90788 . T G 46.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=1.68;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:79,9,0 chrIII 90807 . C T 309 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=9.36;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:342,39,0 chrIII 91659 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=97;Dels=0.00;FS=4.508;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.480;QD=18.61;ReadPosRankSum=1.660;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1838,222,0 chrIII 92106 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.6531;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.98;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2467,288,0 chrIII 92292 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.37;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2125,240,0 chrIII 92716 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.27;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1312,147,0 chrIII 93169 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.52;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1866,210,0 chrIII 93455 . A G 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=3.195;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.155;QD=19.44;ReadPosRankSum=1.696;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1919,234,0 chrIII 93902 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.93;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2646,306,0 chrIII 94470 . T G 1252 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.26;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1285,147,0 chrIII 94576 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=25.58;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,119:119:99:3077,345,0 chrIII 94651 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.30;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1503,174,0 chrIII 94714 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1049,126,0 chrIII 94897 . T C 2911 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.54;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2944,354,0 chrIII 94915 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.07;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3003,336,0 chrIII 95062 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.42;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2036,234,0 chrIII 95658 . G T 1541 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.71;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1574,177,0 chrIII 95686 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.43;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1636,192,0 chrIII 95815 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.4516;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.09;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:966,114,0 chrIII 95906 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.26;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1638,183,0 chrIII 96055 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.09;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1857,213,0 chrIII 96410 . G C 2429 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.6553;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.40;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,126:132:99:2462,285,0 chrIII 97369 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.94;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1457,171,0 chrIII 97474 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1320,150,0 chrIII 97696 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.96;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1563,183,0 chrIII 98578 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8146;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.57;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1912,219,0 chrIII 98617 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=4.713;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.515;QD=20.45;ReadPosRankSum=1.685;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1546,186,0 chrIII 98879 . T C 944 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=20.09;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:977,114,0 chrIII 98918 . C A 577 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=15.59;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:610,69,0 chrIII 98929 . T C 541 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=11.76;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:66:574,66,0 chrIII 98952 . C T 424 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=8.48;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:54:457,54,0 chrIII 98969 . C T 560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.485;QD=11.20;ReadPosRankSum=0.485;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:66:593,66,0 chrIII 99037 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.31;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1260,150,0 chrIII 99163 . T C 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.758;QD=20.84;ReadPosRankSum=1.678;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1367,162,0 chrIII 99197 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.90;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1366,162,0 chrIII 99244 . T C 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.325;QD=17.48;ReadPosRankSum=1.678;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1169,138,0 chrIII 99256 . G T 1208 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=16.32;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1241,141,0 chrIII 99291 . T G 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.541;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-2.350;QD=16.66;ReadPosRankSum=2.604;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1099,126,0 chrIII 99383 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.77;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1197,141,0 chrIII 99392 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.77;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:979,111,0 chrIII 99403 . T A 963 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=15.79;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:996,114,0 chrIII 99481 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=5.699;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.222;QD=19.19;ReadPosRankSum=1.688;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1549,186,0 chrIII 99547 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.32;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1231,141,0 chrIII 99585 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.89;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1140,129,0 chrIII 99709 . A G 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.359;QD=19.49;ReadPosRankSum=1.626;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1300,156,0 chrIII 99873 . T G 830 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:863,99,0 chrIII 99949 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.08;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1197,138,0 chrIII 100295 . A G 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.003;QD=18.35;ReadPosRankSum=1.672;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1079,126,0 chrIII 100329 . C A 836 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.72;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:869,102,0 chrIII 101527 . C A 1162 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1195,138,0 chrIII 101597 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.02;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1354,159,0 chrIII 101813 . T G 873 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.12;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:906,108,0 chrIII 102360 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.46;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1299,159,0 chrIII 102398 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.48;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1202,138,0 chrIII 102477 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1288,144,0 chrIII 102669 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.98;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1579,183,0 chrIII 102819 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.90;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1426,162,0 chrIII 103341 . C A 1826 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.08;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1859,219,0 chrIII 103499 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.14;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2316,264,0 chrIII 103593 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.01;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1734,210,0 chrIII 103649 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.96;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1667,195,0 chrIII 103757 . A C 2302 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.84;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2335,270,0 chrIII 103813 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=20.6639;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.01;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,138:144:99:2770,312,0 chrIII 103883 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=166;Dels=0.00;FS=25.974;HaplotypeScore=8.8493;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.544;QD=20.19;ReadPosRankSum=3.797;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:5,159:166:99:3351,393,0 chrIII 104056 . C G 1508 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=15.23;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1541,180,0 chrIII 104476 . G A 341 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=62.5175;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=3.10;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:42:374,42,0 chrIII 104931 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.23;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1706,207,0 chrIII 105047 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.8704;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.20;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1780,201,0 chrIII 105155 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.20;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2664,303,0 chrIII 105234 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.17;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2340,264,0 chrIII 105854 . G T 2305 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.34;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2338,261,0 chrIII 106134 . C G 2616 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.8368;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.10;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2649,318,0 chrIII 106362 . G C 1692 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=16.75;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1725,207,0 chrIII 106374 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.81;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1743,198,0 chrIII 106731 . A T 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.297;QD=20.17;ReadPosRankSum=0.247;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1445,162,0 chrIII 106818 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7791;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=18.70;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1847,210,0 chrIII 106895 . C G 1378 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.21;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1411,162,0 chrIII 107061 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.277;QD=22.54;ReadPosRankSum=1.703;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2715,318,0 chrIII 107067 . T C 2546 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.58;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2579,297,0 chrIII 108125 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.639;QD=21.28;ReadPosRankSum=1.639;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1608,189,0 chrIII 108225 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.18;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1817,204,0 chrIII 108227 . T A 1563 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.63;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1596,189,0 chrIII 108293 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.62;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2112,243,0 chrIII 108503 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=18.55;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2352,279,0 chrIII 108790 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.48;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1269,147,0 chrIII 108793 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.17;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1246,150,0 chrIII 109046 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.78;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1122,129,0 chrIII 109290 . A C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.038;QD=17.61;ReadPosRankSum=1.706;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2410,288,0 chrIII 109320 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.93;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2608,297,0 chrIII 109596 . T G 1366 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=15.35;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1399,165,0 chrIII 109704 . G C 1837 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.01;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1870,216,0 chrIII 109776 . T C 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.148;QD=15.99;ReadPosRankSum=1.690;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1360,162,0 chrIII 110178 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1456,162,0 chrIII 110840 . G T 1579 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1612,183,0 chrIII 110934 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.93;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1707,192,0 chrIII 110997 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.38;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1614,186,0 chrIII 111026 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.08;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1823,216,0 chrIII 111618 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3447;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.77;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2235,252,0 chrIII 111695 . T G 1577 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.47;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1610,189,0 chrIII 112707 . A C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.647;QD=20.01;ReadPosRankSum=1.523;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1734,204,0 chrIII 112810 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.78;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2110,237,0 chrIII 112827 . A G 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-1.564;QD=17.58;ReadPosRankSum=1.698;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1844,213,0 chrIII 112852 . T G 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.139;HaplotypeScore=91.8183;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;MQRankSum=-0.387;QD=12.64;ReadPosRankSum=-0.185;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1335,159,0 chrIII 112853 . G T 1418 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=91.8183;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=13.77;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1451,162,0 chrIII 112907 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=13.98;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1431,168,0 chrIII 113015 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:74:99:1531,171,0 chrIII 113059 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.59;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1632,186,0 chrIII 113166 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.74;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1832,207,0 chrIII 113279 . T A 656 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.29;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:689,78,0 chrIII 113403 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1585,177,0 chrIII 113488 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.92;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1660,201,0 chrIII 113536 . A G 779 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.31;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:812,93,0 chrIII 113543 . A G 757 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=15.14;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:90:790,90,0 chrIII 113595 . T A 745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.600;QD=14.33;ReadPosRankSum=1.666;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:87:778,87,0 chrIII 113605 . A G 862 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.12;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:895,108,0 chrIII 113636 . A C 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.38;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,141,0 chrIII 113720 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.93;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1647,189,0 chrIII 113781 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.08;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2272,252,0 chrIII 113878 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.68;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1998,231,0 chrIII 113907 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.61;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1764,207,0 chrIII 114025 . G C 1222 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=5.2092;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=15.67;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:76:99:1255,147,0 chrIII 114028 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=14.86;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1133,135,0 chrIII 114044 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=16.70;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1503,177,0 chrIII 114184 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.74;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:93:753,93,0 chrIII 114192 . T C 767 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.26;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:93:800,93,0 chrIII 114262 . G A 413 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=13.32;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:446,54,0 chrIII 114290 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=13.72;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:72:623,72,0 chrIII 114298 . A T 593 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.12;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:69:626,69,0 chrIII 114307 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=15.35;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:81:693,81,0 chrIII 114366 . G A 834 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=21.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:96:867,96,0 chrIII 114382 . T G 675 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=22.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:81:708,81,0 chrIII 114426 . G A 42.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=8.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:75,9,0 chrIII 114428 . A T 39.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:72,9,0 chrIII 114452 . T C 89.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=7.44;SB=-4.726e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:122,15,0 chrIII 114461 . A C 90.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=6.02;SB=-4.627e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:123,15,0 chrIII 114485 . A T 313 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=12.04;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:39:346,39,0 chrIII 114644 . A G 827 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=25.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:99:860,99,0 chrIII 114698 . A C 933 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.20;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:966,111,0 chrIII 114714 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.12;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1316,150,0 chrIII 114762 . T C 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.479;QD=20.49;ReadPosRankSum=1.659;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:996,117,0 chrIII 114839 . C G 1105 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.09;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1138,132,0 chrIII 114891 . T C 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=89;Dels=0.00;FS=2.709;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.430;QD=19.57;ReadPosRankSum=2.365;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,85:89:99:1775,210,0 chrIII 114903 . G A 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.967;QD=20.87;ReadPosRankSum=0.242;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1828,204,0 chrIII 114974 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.64;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1109,126,0 chrIII 114986 . G A 925 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.52;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:958,111,0 chrIII 115127 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.83;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1783,207,0 chrIII 115183 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.04;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1800,207,0 chrIII 115195 . T G 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.29;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,201,0 chrIII 115444 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.77;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1992,225,0 chrIII 115623 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.71;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1081,126,0 chrIII 115736 . A T 1486 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.54;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1519,180,0 chrIII 116011 . G T 1345 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1378,156,0 chrIII 116146 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=16.73;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1288,150,0 chrIII 116156 . A G 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.367;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.729;QD=16.52;ReadPosRankSum=1.687;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1305,153,0 chrIII 116224 . T G 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.466;QD=19.04;ReadPosRankSum=1.599;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1042,120,0 chrIII 116293 . A T 1118 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.95;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1151,135,0 chrIII 116479 . A C 1641 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.77;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1674,195,0 chrIII 116641 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.04;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:985,111,0 chrIII 116673 . A C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.384;QD=18.86;ReadPosRankSum=2.333;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:2,40:42:99:825,99,0 chrIII 116741 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.31;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:1095,123,0 chrIII 116770 . C A 941 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.43;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:974,114,0 chrIII 116930 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.30;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:962,111,0 chrIII 117035 . G C 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.35;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,165,0 chrIII 117254 . A T 949 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.57;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:982,111,0 chrIII 117476 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1506,174,0 chrIII 117923 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6023;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.69;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1942,222,0 chrIII 117992 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.77;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1990,225,0 chrIII 118342 . G A 829 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.9161;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=15.07;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:96:862,96,0 chrIII 118354 . T A 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=4.284;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.147;QD=15.69;ReadPosRankSum=1.674;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:990,111,0 chrIII 118412 . C G 1371 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.28;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1404,168,0 chrIII 118665 . G T 1178 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.54;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1211,135,0 chrIII 118719 . A G 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.421;QD=20.30;ReadPosRankSum=1.685;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1535,177,0 chrIII 118775 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.18;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1548,183,0 chrIII 119474 . A C 1203 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.70;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1236,147,0 chrIII 119587 . A G 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=5.543;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.443;QD=22.05;ReadPosRankSum=1.652;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:981,117,0 chrIII 119779 . T A 1214 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1247,138,0 chrIII 120133 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.12;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1639,192,0 chrIII 120341 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=16.91;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1470,165,0 chrIII 120342 . T C 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=86;Dels=0.00;FS=5.732;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.441;QD=14.87;ReadPosRankSum=1.941;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:3,82:86:99:1312,140,0 chrIII 120598 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.43;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:752,90,0 chrIII 121150 . T C 2374 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.39;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2407,285,0 chrIII 121210 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.3161;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.36;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1969,225,0 chrIII 122251 . T C 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.713;DP=68;Dels=0.00;FS=6.146;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.743;QD=15.93;ReadPosRankSum=2.895;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:3,64:68:99:1116,129,0 chrIII 122386 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3801;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.48;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1483,177,0 chrIII 122393 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.8938;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=17.47;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1483,174,0 chrIII 122563 . C G 1859 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.89;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1892,219,0 chrIII 122778 . G C 1202 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1825;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=15.41;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1235,147,0 chrIII 122840 . G C 1476 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.78;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1509,177,0 chrIII 122867 . G C 1619 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=17.41;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1652,192,0 chrIII 123248 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.02;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1446,168,0 chrIII 123295 . A T 1388 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.8012;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.03;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1421,162,0 chrIII 123494 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=15.80;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1392,159,0 chrIII 123908 . G T 2137 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=21.37;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2170,255,0 chrIII 124472 . A G 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609;DP=28;Dels=0.00;FS=7.482;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;MQRankSum=1.114;QD=1.64;ReadPosRankSum=0.743;SB=-9.098e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:9:78,9,0 chrIII 124571 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=17.40;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1634,186,0 chrIII 124665 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.94;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1520,168,0 chrIII 124677 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.70;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1333,156,0 chrIII 124685 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=18.15;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1249,147,0 chrIII 125120 . T C 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.425;QD=18.57;ReadPosRankSum=1.667;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1017,120,0 chrIII 125134 . A G 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=65;Dels=0.00;FS=11.627;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.755;QD=17.88;ReadPosRankSum=2.690;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:3,59:65:99:1195,138,0 chrIII 125835 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.47;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1435,168,0 chrIII 126606 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.49;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1261,153,0 chrIII 126802 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=23.20;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1402,156,0 chrIII 126856 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.47;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1151,135,0 chrIII 126871 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=15.20;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:960,111,0 chrIII 126876 . T C 866 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.20;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:899,105,0 chrIII 127056 . G C 1365 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.68;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1398,165,0 chrIII 127365 . G C 831 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=14.84;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:864,99,0 chrIII 127464 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.00;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:973,114,0 chrIII 127671 . A C 562 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.13;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:595,69,0 chrIII 127692 . T A 440 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=16.30;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:473,54,0 chrIII 127715 . T C 693 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.00;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:726,87,0 chrIII 128021 . G C 838 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.95;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:871,102,0 chrIII 128224 . T C 321 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=12.84;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:42:354,42,0 chrIII 128266 . T C 643 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.74;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:676,81,0 chrIII 128376 . T C 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=3.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=0.659;QD=17.96;ReadPosRankSum=2.345;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:877,102,0 chrIII 128401 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.89;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1034,117,0 chrIII 128538 . T C 1671 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1704,201,0 chrIII 128667 . A G 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=3.765;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.527;QD=19.80;ReadPosRankSum=1.632;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1419,168,0 chrIII 128694 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.15;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1524,171,0 chrIII 128766 . G C 1513 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.45;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1546,183,0 chrIII 128979 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.66;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1724,201,0 chrIII 129036 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.863;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.572;QD=19.27;ReadPosRankSum=2.391;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1652,198,0 chrIII 129054 . T C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=5.656;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-1.304;QD=20.02;ReadPosRankSum=2.922;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1835,210,0 chrIII 129196 . A T 1240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=64;Dels=0.00;FS=6.021;HaplotypeScore=3.4279;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=2.128;QD=19.37;ReadPosRankSum=2.859;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1273,144,0 chrIII 129310 . T G 1780 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.94;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1813,210,0 chrIII 129336 . A T 1928 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.16;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1961,225,0 chrIII 129603 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1321,153,0 chrIII 130263 . T C 590 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=12.83;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:623,75,0 chrIII 130268 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=13.38;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:662,75,0 chrIII 130317 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=12.65;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:577,66,0 chrIII 130325 . C T 652 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=14.49;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:685,78,0 chrIII 130372 . G A 724 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.24;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:757,87,0 chrIII 130406 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.94;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:876,105,0 chrIII 130657 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.67;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:99:965,108,0 chrIII 130829 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.78;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1209,147,0 chrIII 130940 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.52;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1255,150,0 chrIII 131861 . A G 2035 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.98;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2068,240,0 chrIII 131983 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:954,111,0 chrIII 133383 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.96;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1095,123,0 chrIII 133467 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1305,156,0 chrIII 133715 . G A 951 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=17.94;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:984,114,0 chrIII 133716 . A G 915 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.60;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:948,111,0 chrIII 133913 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.74;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1062,126,0 chrIII 134369 . C A 1222 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.71;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1255,141,0 chrIII 135044 . G C 1936 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.26;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1969,237,0 chrIII 136159 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.32;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1425,168,0 chrIII 136789 . T C 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=137;Dels=0.00;FS=19.270;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.787;QD=19.12;ReadPosRankSum=2.934;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:3,134:137:99:2653,312,0 chrIII 138096 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.63;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1502,174,0 chrIII 138345 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.06;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2034,228,0 chrIII 139189 . G C 673 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:84:706,84,0 chrIII 139934 . T C 1074 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.52;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1107,132,0 chrIII 139959 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.41;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1211,141,0 chrIII 140025 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1482,165,0 chrIII 140121 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9037;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.91;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1251,144,0 chrIII 140422 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.17;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1585,180,0 chrIII 140871 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.00;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1461,162,0 chrIII 141153 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1522,171,0 chrIII 141617 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=17.91;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1054,126,0 chrIII 141799 . T A 964 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.51;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:997,114,0 chrIII 141860 . T C 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.217;QD=18.77;ReadPosRankSum=1.624;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1234,147,0 chrIII 142192 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.34;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1155,129,0 chrIII 142587 . T C 254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=21;Dels=0.00;FS=7.782;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.193;QD=12.10;ReadPosRankSum=1.542;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,17:21:33:287,33,0 chrIII 142794 . G A 263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.466;DP=57;Dels=0.00;FS=31.910;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;MQRankSum=0.008;QD=4.61;ReadPosRankSum=6.162;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:37,20:57:33:296,33,0 chrIII 142805 . C A,T 190.27 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=15.8506;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.36;MQ0=0;QD=2.68;SB=-2.763e+02 GT:AD:DP:GQ:PL 1/2:0,18,53:71:39:250,66,39,184,0,175 chrIII 142828 . C A 388 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=6.06;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:48:421,48,0 chrIII 142902 . C T 864 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=9.29;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:897,102,0 chrIII 142906 . T C 734 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=1.869;QD=8.25;ReadPosRankSum=2.394;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:90:767,90,0 chrIII 142907 . C A 808 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=9.08;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:96:841,96,0 chrIII 142911 . T C 784 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=8.52;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:96:817,96,0 chrIII 143031 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=1;QD=19.98;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2171,252,0 chrIII 143159 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=18.60;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1744,198,0 chrIII 143430 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7297;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.59;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1581,183,0 chrIII 143575 . C G 741 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=17.23;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:90:774,90,0 chrIII 143576 . A G 771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=44;Dels=0.00;FS=3.029;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.324;QD=17.52;ReadPosRankSum=2.226;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:93:804,93,0 chrIII 143625 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.67;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:783,90,0 chrIII 144125 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1105,123,0 chrIII 144269 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1251,144,0 chrIII 144591 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.43;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1320,147,0 chrIII 145017 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.73;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1644,186,0 chrIII 145055 . A G 2525 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.20;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2558,297,0 chrIII 145513 . T C 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.730;QD=17.89;ReadPosRankSum=1.703;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2216,258,0 chrIII 145633 . T A 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=126;Dels=0.00;FS=6.338;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.185;QD=17.88;ReadPosRankSum=2.411;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2286,258,0 chrIII 145634 . A G 2223 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.64;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2256,261,0 chrIII 145673 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=16.08;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1400,162,0 chrIII 145735 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1410,168,0 chrIII 145988 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.38;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2853,318,0 chrIII 146420 . A G 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.647;QD=18.98;ReadPosRankSum=1.690;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1608,186,0 chrIII 146470 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=6.3597;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.039;QD=18.93;ReadPosRankSum=0.018;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1831,213,0 chrIII 146949 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.85;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1086,123,0 chrIII 147587 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.91;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2342,279,0 chrIII 148041 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.17;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1030,123,0 chrIII 148049 . T C 897 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.94;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:930,111,0 chrIII 148271 . T C 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.144;QD=22.40;ReadPosRankSum=1.667;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1220,144,0 chrIII 148832 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.53;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1949,216,0 chrIII 148991 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.01;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1384,162,0 chrIII 149131 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.59;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1433,159,0 chrIII 149433 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.52;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1387,159,0 chrIII 149504 . G C 1001 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=39.3527;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=18.89;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1034,123,0 chrIII 149508 . T C 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=39.8490;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.128;QD=17.33;ReadPosRankSum=-0.770;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:986,114,0 chrIII 149594 . T A 1507 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.16;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1540,171,0 chrIII 149686 . C T 580 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=12.89;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:613,72,0 chrIII 149687 . C A 667 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=14.82;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:700,81,0 chrIII 149702 . A G 775 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=13.36;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:93:808,93,0 chrIII 149831 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=20.00;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1113,129,0 chrIII 149847 . A G 1006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=10.765;HaplotypeScore=12.0308;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=1.122;QD=18.29;ReadPosRankSum=2.359;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1039,126,0 chrIII 149901 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=48.2253;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.79;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:906,111,0 chrIII 150045 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.39;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1355,153,0 chrIII 150117 . T A 1239 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.31;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1272,144,0 chrIII 150129 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.37;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1296,159,0 chrIII 150161 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.71;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1413,165,0 chrIII 150179 . T A 1580 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.25;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1613,183,0 chrIII 150203 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.20;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1525,180,0 chrIII 150321 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.728;QD=20.14;ReadPosRankSum=1.682;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1423,165,0 chrIII 150478 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.44;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1402,159,0 chrIII 150520 . C A 1443 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.20;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1476,165,0 chrIII 150586 . A G 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=8.876;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.686;QD=18.48;ReadPosRankSum=2.372;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1197,144,0 chrIII 150592 . C G 1077 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.57;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1110,132,0 chrIII 150619 . G T 1182 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.65;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1215,135,0 chrIII 150717 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.62;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2419,270,0 chrIII 150823 . T C 2661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=127;Dels=0.00;FS=2.583;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.326;QD=20.95;ReadPosRankSum=2.881;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2694,324,0 chrIII 150868 . T A 2819 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.20;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2852,327,0 chrIII 151161 . T G 2194 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=16.2903;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=20.31;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2227,255,0 chrIII 151378 . G C 1365 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.07;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1398,162,0 chrIII 151385 . A C 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.026;QD=19.34;ReadPosRankSum=1.681;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1348,156,0 chrIII 151509 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.29;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1638,189,0 chrIII 151728 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.01;FS=3.635;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=2;MQRankSum=-0.125;QD=16.79;ReadPosRankSum=1.696;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1712,204,0 chrIII 151757 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=14.85;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1355,162,0 chrIII 151761 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=1;QD=15.62;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1423,162,0 chrIII 151793 . T C 851 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=10.38;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:884,108,0 chrIII 151796 . C T 718 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;QD=10.56;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:90:751,90,0 chrIII 151797 . T A 675 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;QD=9.93;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:87:708,87,0 chrIII 151803 . T G 605 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;MQRankSum=0.742;QD=8.52;ReadPosRankSum=1.683;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:75:638,75,0 chrIII 151809 . T C 601 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=8.97;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:75:634,75,0 chrIII 151817 . T C 576 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=8.60;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:72:609,72,0 chrIII 151826 . C T 724 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=10.49;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:757,87,0 chrIII 151832 . G C 781 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=10.70;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:814,96,0 chrIII 151834 . A C 900 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.80;MQ0=0;QD=11.84;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:933,111,0 chrIII 151925 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=16.24;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1332,153,0 chrIII 152069 . G T 2041 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=19.07;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2074,234,0 chrIII 152240 . A C 991 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.22;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1024,117,0 chrIII 152257 . G A 796 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=15.02;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:96:829,96,0 chrIII 152269 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.08;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1190,138,0 chrIII 152334 . A G 1681 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.68;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1714,198,0 chrIII 152439 . T G 1928 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.29;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1961,228,0 chrIII 152466 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.10;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1742,195,0 chrIII 152546 . A G 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.6076;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.181;QD=18.00;ReadPosRankSum=1.681;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1257,130,0 chrIII 152773 . A T 2467 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.83;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2500,282,0 chrIII 152950 . A G 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=5.359;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.724;QD=18.92;ReadPosRankSum=1.688;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1528,183,0 chrIII 152956 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.37;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1388,162,0 chrIII 152962 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.95;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1568,177,0 chrIII 153418 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.02;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1955,219,0 chrIII 153719 . T G 1231 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.59;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1264,150,0 chrIII 153893 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.658;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.972;QD=15.66;ReadPosRankSum=2.862;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1740,201,0 chrIII 154117 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=45;Dels=0.00;FS=12.355;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.704;QD=18.53;ReadPosRankSum=2.338;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,42:45:99:867,99,0 chrIII 154683 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.59;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2305,264,0 chrIII 154845 . C A 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.68;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1998,225,0 chrIII 154902 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.38;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1719,204,0 chrIII 155078 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.742;QD=22.88;ReadPosRankSum=1.687;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1795,207,0 chrIII 155243 . A G 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.192;QD=14.41;ReadPosRankSum=1.647;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1200,144,0 chrIII 155488 . A T 1431 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.85;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1464,165,0 chrIII 155616 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.74;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1257,147,0 chrIII 155855 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.32;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:724,81,0 chrIII 155900 . A G 947 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:980,117,0 chrIII 156275 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.75;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1755,201,0 chrIII 156289 . A G 1323 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.05;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1356,162,0 chrIII 156517 . G C 2254 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.31;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2287,273,0 chrIII 156868 . A G 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.684;QD=19.25;ReadPosRankSum=1.641;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1496,177,0 chrIII 156960 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1351,156,0 chrIII 157443 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.93;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2487,288,0 chrIII 157485 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=1.092;QD=20.27;ReadPosRankSum=1.703;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2445,288,0 chrIII 157807 . A G 2828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.090;QD=20.06;ReadPosRankSum=2.415;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2861,336,0 chrIII 157879 . C G 1673 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9758;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=14.55;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1706,198,0 chrIII 157881 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1871;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=15.34;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1582,186,0 chrIII 157998 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.54;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1296,150,0 chrIII 158053 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1461;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.94;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1325,153,0 chrIII 158141 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.28;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1802,201,0 chrIII 158345 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.50;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:803,93,0 chrIII 158627 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.38;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1254,144,0 chrIII 158886 . A G 1069 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.70;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1102,129,0 chrIII 158956 . T C 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.32;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,210,0 chrIII 159547 . A T 887 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.10;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:920,105,0 chrIII 159689 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.33;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1998,222,0 chrIII 159720 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.41;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2302,267,0 chrIII 160421 . T G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.092;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.176;QD=18.07;ReadPosRankSum=1.430;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,145:148:99:2707,297,0 chrIII 160583 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.90;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1705,192,0 chrIII 161749 . G T 1784 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.7776;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.99;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1817,207,0 chrIII 161785 . T C 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.354;DP=87;Dels=0.00;FS=19.097;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.692;QD=21.24;ReadPosRankSum=3.354;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:4,83:87:99:1881,219,0 chrIII 162396 . G C 270 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.00;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:303,36,0 chrIII 162640 . T G 774 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.515;QD=20.92;ReadPosRankSum=1.639;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:99:807,99,0 chrIII 163645 . T G 1186 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.13;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1219,147,0 chrIII 163816 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.51;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1612,183,0 chrIII 163859 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1791,210,0 chrIII 164068 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.08;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1976,225,0 chrIII 164277 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=15.20;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1112,132,0 chrIII 164651 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.61;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1445,171,0 chrIII 164696 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.82;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2531,285,0 chrIII 165283 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.02;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1631,180,0 chrIII 165407 . A C 2483 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=6.7907;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.41;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2516,297,0 chrIII 166020 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.51;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1440,171,0 chrIII 166022 . A G 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.762;QD=18.79;ReadPosRankSum=1.686;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1461,168,0 chrIII 166190 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.54;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1733,192,0 chrIII 166457 . A T 2301 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.36;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2334,261,0 chrIII 166874 . G A 991 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.02;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1024,120,0 chrIII 166891 . T C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.228;QD=18.40;ReadPosRankSum=1.669;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1045,123,0 chrIII 166897 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.40;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1042,117,0 chrIII 167066 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=15.58;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1155,132,0 chrIII 167074 . A T 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.652;QD=15.48;ReadPosRankSum=1.687;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1225,138,0 chrIII 167112 . G T 1302 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=20.1819;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.60;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1335,150,0 chrIII 167138 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.21;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1128,129,0 chrIII 167218 . C G 731 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.31;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:764,90,0 chrIII 167336 . T C 1281 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.35;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1314,153,0 chrIII 167366 . G C 1184 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.93;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1217,141,0 chrIII 167580 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.36;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1397,168,0 chrIII 167970 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.93;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1310,147,0 chrIII 168244 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=24.95;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1555,177,0 chrIII 168290 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=66;Dels=0.00;FS=2.607;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=0.580;QD=20.76;ReadPosRankSum=2.301;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1403,165,0 chrIII 168390 . T C 85.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.9681;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;MQRankSum=0.572;QD=9.47;ReadPosRankSum=-1.067;SB=2.74 GT:AD:DP:GQ:PL 1/1:2,6:9:15:118,15,0 chrIII 168948 . A G 91.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=18.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:124,15,0 chrIII 168964 . G A 101.26 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=1;QD=16.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:15:134,15,0 chrIII 168973 . T G 46.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=2;QD=9.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,3:5:9:79,9,0 chrIII 169091 . G A 500 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.4936;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=19.23;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:533,60,0 chrIII 169279 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=2;QD=3.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:47,6,0 chrIII 169499 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=4.46;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,3:4:6:49,6,0 chrIII 169525 . A C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIII 169527 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIII 169528 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrIII 169530 . C T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.93;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrIII 169531 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrIII 169535 . A C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrIII 169594 . T G 948 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=15.54;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:981,114,0 chrIII 169751 . G T 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=105;Dels=0.00;FS=3.543;HaplotypeScore=7.8599;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.400;QD=19.47;ReadPosRankSum=0.999;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2077,240,0 chrIII 169850 . G C 2352 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.98;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2385,279,0 chrIII 170102 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.82;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1859,216,0 chrIII 170143 . T C 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=6.704;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.252;QD=18.31;ReadPosRankSum=1.631;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1937,228,0 chrIII 170363 . T C 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.029;QD=17.81;ReadPosRankSum=1.682;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1262,147,0 chrIII 170381 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=17.52;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1014,120,0 chrIII 170442 . T C 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=65;Dels=0.00;FS=6.506;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-1.462;QD=13.57;ReadPosRankSum=2.374;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:915,105,0 chrIII 170451 . G T 1021 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=15.71;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1054,120,0 chrIII 170485 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.478;QD=16.57;ReadPosRankSum=1.673;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:994,120,0 chrIII 170561 . A G 1094 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=14.39;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1127,132,0 chrIII 170570 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=14.81;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1114,126,0 chrIII 170631 . C T 1008 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=15.51;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1041,123,0 chrIII 170765 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=16.38;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1163,138,0 chrIII 170775 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=15.05;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1237,141,0 chrIII 170886 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.25;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1896,210,0 chrIII 171207 . G T 1970 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.90;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2003,225,0 chrIII 171564 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.79;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1624,183,0 chrIII 171620 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1505,174,0 chrIII 172122 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.07;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1352,159,0 chrIII 172125 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.14;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1373,156,0 chrIII 172362 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.95;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1855,207,0 chrIII 173169 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.67;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2829,318,0 chrIII 173565 . T C 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.890;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.468;QD=13.86;ReadPosRankSum=1.639;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1059,123,0 chrIII 173853 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.4184;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.28;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1191,144,0 chrIII 173968 . A G 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=2.781;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.023;QD=17.75;ReadPosRankSum=2.355;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:956,114,0 chrIII 174733 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.55;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1542,180,0 chrIII 174996 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5132;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.42;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1322,153,0 chrIII 175038 . G C 1440 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.46;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1473,174,0 chrIII 175122 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.39;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1265,144,0 chrIII 175128 . T A 1081 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.38;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1114,126,0 chrIII 176040 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2069,240,0 chrIII 176538 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.43;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1305,153,0 chrIII 176624 . T A 2528 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.89;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2561,294,0 chrIII 176637 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.25;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2371,261,0 chrIII 176648 . C T 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.668;QD=19.61;ReadPosRankSum=1.476;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2151,219,0 chrIII 176754 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.132;QD=20.52;ReadPosRankSum=1.640;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1613,189,0 chrIII 176807 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1105,132,0 chrIII 177141 . A T 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=56;Dels=0.00;FS=3.038;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.710;QD=17.98;ReadPosRankSum=2.359;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1040,117,0 chrIII 177325 . A G 846 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.67;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:879,102,0 chrIII 177399 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.75;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1589,186,0 chrIII 178141 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1040,120,0 chrIII 178378 . C T 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=3.736;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;MQRankSum=0.733;QD=20.42;ReadPosRankSum=0.533;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1115,126,0 chrIII 178421 . C A 909 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.76;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:942,105,0 chrIII 178465 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.88;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1007,114,0 chrIII 178602 . A G 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=55.1518;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.245;QD=20.19;ReadPosRankSum=1.570;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1325,153,0 chrIII 178994 . G C 800 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.22;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:99:833,99,0 chrIII 179047 . A G 669 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.08;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:702,81,0 chrIII 179049 . T A 674 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.22;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:707,78,0 chrIII 179185 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1360,159,0 chrIII 179704 . A G 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.565;QD=17.33;ReadPosRankSum=1.690;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1489,174,0 chrIII 179888 . T G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;DP=73;Dels=0.00;FS=2.726;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.084;QD=18.11;ReadPosRankSum=1.639;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1355,159,0 chrIII 180127 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.79;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1240,138,0 chrIII 180717 . A G 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.651;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.713;QD=21.82;ReadPosRankSum=1.664;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1146,135,0 chrIII 180860 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1158,132,0 chrIII 180969 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.63;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:932,108,0 chrIII 181373 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.17;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1748,198,0 chrIII 181465 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.62;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:2024,228,0 chrIII 181556 . T C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=83;Dels=0.00;FS=6.075;HaplotypeScore=5.3183;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.689;QD=21.42;ReadPosRankSum=1.647;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1811,210,0 chrIII 181625 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.533;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.339;QD=21.10;ReadPosRankSum=1.661;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2080,240,0 chrIII 181637 . T C 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.109;QD=19.75;ReadPosRankSum=-1.343;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1791,199,0 chrIII 181685 . A G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=2.846;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.354;QD=18.49;ReadPosRankSum=2.388;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1531,183,0 chrIII 181794 . T C 2069 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2102,246,0 chrIII 182155 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.903;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.462;QD=20.68;ReadPosRankSum=2.374;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1377,165,0 chrIII 183083 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1469,171,0 chrIII 183320 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1641,189,0 chrIII 183385 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.79;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1697,195,0 chrIII 183635 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1493,174,0 chrIII 184682 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.41;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:81:706,81,0 chrIII 184808 . T C 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=66;Dels=0.00;FS=9.670;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.429;QD=17.39;ReadPosRankSum=2.795;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:3,61:66:99:1181,138,0 chrIII 184874 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.02;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1231,141,0 chrIII 185153 . T A 1412 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5327;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.34;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1445,174,0 chrIII 185310 . C G 1687 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.7387;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=21.91;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1720,201,0 chrIII 185357 . C T 1841 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.18;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1874,213,0 chrIII 185372 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.85;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1479,177,0 chrIII 185444 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.19;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1561,186,0 chrIII 185468 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.47;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1937,216,0 chrIII 185558 . A G 1150 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.55;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1183,138,0 chrIII 185604 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.00;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1477,171,0 chrIII 185633 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.060;QD=17.11;ReadPosRankSum=1.692;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1522,177,0 chrIII 185655 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=14.99;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1397,156,0 chrIII 185657 . A G 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-1.460;QD=13.42;ReadPosRankSum=1.693;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1227,141,0 chrIII 185682 . A G 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=94;Dels=0.00;FS=7.297;HaplotypeScore=8.8328;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.147;QD=14.00;ReadPosRankSum=2.396;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:1349,156,0 chrIII 185836 . A C 1170 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.83;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1203,141,0 chrIII 185870 . G A 929 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.20;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:962,108,0 chrIII 185887 . A G 718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.062;QD=12.82;ReadPosRankSum=1.670;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:87:751,87,0 chrIII 186028 . C G 1364 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.43;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1397,162,0 chrIII 186237 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.24;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1256,141,0 chrIII 186384 . A T 1329 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.91;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1362,156,0 chrIII 186911 . C A 1404 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.00;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1437,168,0 chrIII 187010 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.52;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2126,240,0 chrIII 187655 . G A 1031 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1064,123,0 chrIII 187784 . A G 599 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.19;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:632,72,0 chrIII 187853 . G A 834 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:867,99,0 chrIII 187932 . G A 621 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.8978;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.74;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:654,78,0 chrIII 188202 . C T 677 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.36;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:710,81,0 chrIII 188418 . C T 891 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.91;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:924,111,0 chrIII 188786 . G T 906 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.42;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:939,111,0 chrIII 188904 . C A 1153 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.96;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1186,132,0 chrIII 188954 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.52;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1302,147,0 chrIII 188979 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=17.83;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1281,147,0 chrIII 188995 . A G 1091 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=15.59;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1124,132,0 chrIII 189025 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=12.64;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1120,126,0 chrIII 189040 . A C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;MQRankSum=-0.939;QD=10.78;ReadPosRankSum=1.690;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:928,108,0 chrIII 189052 . C G 1057 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=12.01;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1090,126,0 chrIII 189331 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.98;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1816,213,0 chrIII 189494 . A G 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.978;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.625;QD=21.00;ReadPosRankSum=1.705;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2742,330,0 chrIII 189555 . A G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=5.068;HaplotypeScore=5.1499;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.601;QD=21.87;ReadPosRankSum=1.699;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2351,276,0 chrIII 189875 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.446;QD=17.29;ReadPosRankSum=1.637;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1918,228,0 chrIII 190151 . A G 515 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.655;QD=11.44;ReadPosRankSum=1.655;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:1,44:45:63:548,63,0 chrIII 190660 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.087;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.436;QD=20.20;ReadPosRankSum=1.690;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1689,201,0 chrIII 190810 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=10.6292;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.36;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1214,138,0 chrIII 190951 . T C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.076;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9125;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.963;QD=16.66;ReadPosRankSum=1.111;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1399,165,0 chrIII 190969 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.4845;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.64;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1431,168,0 chrIII 191536 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.79;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1738,198,0 chrIII 192293 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.13;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1660,189,0 chrIII 192710 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.72;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1592,186,0 chrIII 192715 . C A 1674 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.81;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1707,192,0 chrIII 193063 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.19;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1649,192,0 chrIII 193084 . T C 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.382;QD=18.54;ReadPosRankSum=1.693;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1683,198,0 chrIII 193107 . C A 1751 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.05;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1784,207,0 chrIII 193294 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.20;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1835,213,0 chrIII 193320 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.332;QD=20.85;ReadPosRankSum=1.555;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1659,195,0 chrIII 193503 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=85;Dels=0.00;FS=6.177;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.710;QD=19.92;ReadPosRankSum=2.334;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1726,207,0 chrIII 193675 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.46;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1711,192,0 chrIII 193815 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.81;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1143,129,0 chrIII 194051 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.98;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2147,240,0 chrIII 194107 . C G 1296 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.64;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1329,153,0 chrIII 194217 . A T 826 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.21;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:859,96,0 chrIII 194218 . T C 795 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.22;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:828,96,0 chrIII 194465 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.00;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1073,126,0 chrIII 194544 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.51;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1259,147,0 chrIII 194732 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.48;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2121,252,0 chrIII 195038 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.34;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1854,216,0 chrIII 195050 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.4976;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.80;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1777,207,0 chrIII 195140 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.02;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1904,219,0 chrIII 195587 . A T 2287 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2320,267,0 chrIII 196131 . C G 1429 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1462,168,0 chrIII 196232 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.63;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1893,213,0 chrIII 196742 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.11;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1501,171,0 chrIII 197217 . A C 1669 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.97;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1702,204,0 chrIII 197393 . A T 2123 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=20.03;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2156,246,0 chrIII 198029 . A T 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=3.441;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.405;QD=16.90;ReadPosRankSum=-0.490;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1858,216,0 chrIII 198348 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.5303;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.54;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1948,228,0 chrIII 198596 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.70;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1688,195,0 chrIII 198944 . T A 3361.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0433;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=1;QD=21.97;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3361,384,0 chrIII 199307 . A G 1391 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=17;MQRankSum=1.422;QD=11.50;ReadPosRankSum=2.834;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:3,117:121:99:1424,165,0 chrIII 201041 . C A 961 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=46;QD=11.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:994,111,0 chrIII 201081 . C T 995 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=78;QD=7.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1028,117,0 chrIII 201125 . G C 1514 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=59;QD=11.30;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,131:134:99:1547,180,0 chrIII 201173 . A T 2157 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.26;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2190,249,0 chrIII 201189 . A C 2154 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.80;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2187,258,0 chrIII 201258 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.04;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1927,222,0 chrIII 201587 . T C 1730 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.80;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1763,207,0 chrIII 201627 . C A 1428 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=16.41;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1461,174,0 chrIII 201978 . A G 840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=6.850;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.619;QD=16.80;ReadPosRankSum=2.302;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:873,102,0 chrIII 201982 . G C 895 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.55;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:928,108,0 chrIII 202304 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=3.153;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.509;QD=21.41;ReadPosRankSum=1.621;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1403,162,0 chrIII 202551 . T A 1401 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.91;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1434,162,0 chrIII 202704 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.99;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1476,171,0 chrIII 202932 . C A 1135 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=16.94;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1168,132,0 chrIII 202939 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.08;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1094,126,0 chrIII 203124 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.87;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2017,234,0 chrIII 203232 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.98;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1267,153,0 chrIII 203412 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.96;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2150,252,0 chrIII 203463 . C G 2334 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2367,276,0 chrIII 203493 . A T 2183 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.49;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2216,261,0 chrIII 203567 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.695;QD=20.32;ReadPosRankSum=1.695;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1943,225,0 chrIII 203976 . A G 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.767;QD=18.69;ReadPosRankSum=1.688;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1528,183,0 chrIII 203979 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.72;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1532,177,0 chrIII 204171 . G A 1041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=5.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.396;QD=14.46;ReadPosRankSum=-0.198;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1074,129,0 chrIII 204174 . T C 1120 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=15.14;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1153,135,0 chrIII 204525 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.25;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1609,183,0 chrIII 204530 . A T 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-0.790;QD=14.67;ReadPosRankSum=1.564;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1544,177,0 chrIII 204543 . G T 1365 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=13.79;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1398,162,0 chrIII 204670 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.87;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1177,132,0 chrIII 204681 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.08;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1058,123,0 chrIII 204750 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=17.28;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1312,153,0 chrIII 205338 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.90;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:809,93,0 chrIII 205454 . A T 1058 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.53;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1091,129,0 chrIII 205472 . C A 962 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.03;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:995,114,0 chrIII 205536 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=16.29;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:766,87,0 chrIII 205549 . A T 694 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=16.52;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:727,81,0 chrIII 205553 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.60;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:657,75,0 chrIII 205619 . A G 333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.053;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.150;QD=13.32;ReadPosRankSum=2.254;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:2,23:25:42:366,42,0 chrIII 205637 . C T 445 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.35;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:478,54,0 chrIII 205673 . G C 460 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=49.5906;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=15.33;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:493,57,0 chrIII 205742 . A T 220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.528;QD=10.00;ReadPosRankSum=2.192;SB=-8.000e+01 GT:AD:DP:GQ:PL 1/1:2,20:22:30:253,30,0 chrIII 205779 . T A 185.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.34;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:218,24,0 chrIII 205780 . G A 185.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.34;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:218,24,0 chrIII 205798 . T C 124.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.34;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:18:157,18,0 chrIII 205806 . A G 90.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.21;SB=-1.211e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:123,15,0 chrIII 205811 . T C 95.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=-1.737;QD=7.33;ReadPosRankSum=1.470;SB=-1.281e+02 GT:AD:DP:GQ:PL 1/1:1,12:13:15:128,15,0 chrIII 205824 . A C 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;MQRankSum=-0.579;QD=3.58;ReadPosRankSum=1.448;SB=-1.288e+02 GT:AD:DP:GQ:PL 1/1:1,11:12:9:75,9,0 chrIII 205857 . G C 122.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=11.10;SB=-5.311e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:155,18,0 chrIII 205870 . A T 68.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=8.56;SB=-5.339e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:101,12,0 chrIII 205886 . T G 151.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=11.62;SB=-8.106e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:184,21,0 chrIII 206083 . A T 395 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.95;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:428,48,0 chrIII 206233 . A G 2075 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.6246;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.55;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2108,249,0 chrIII 207086 . G C 1400 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.90;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1433,165,0 chrIII 207294 . C A 2124 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.85;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2157,243,0 chrIII 207459 . C G 1226 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=14.95;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1259,150,0 chrIII 207528 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=16.25;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1755,198,0 chrIII 207534 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=14.47;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1625,186,0 chrIII 207705 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.701;QD=20.23;ReadPosRankSum=1.671;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2319,270,0 chrIII 207999 . C G 1471 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=93.0500;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=14.42;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1504,180,0 chrIII 208234 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=62;Dels=0.00;FS=7.314;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.458;QD=18.95;ReadPosRankSum=2.371;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1208,138,0 chrIII 208480 . G T 1247 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.9412;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=15.40;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1280,153,0 chrIII 208489 . A G 1168 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=16.00;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1201,144,0 chrIII 208702 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.08;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1993,228,0 chrIII 208723 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.84;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1700,195,0 chrIII 208954 . T A 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=91;Dels=0.00;FS=2.810;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.241;QD=17.22;ReadPosRankSum=2.393;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,87:91:99:1600,183,0 chrIII 209143 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.02;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1840,213,0 chrIII 209248 . A G 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;MQRankSum=-0.182;QD=11.92;ReadPosRankSum=1.687;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:939,111,0 chrIII 209260 . C G 743 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=9.17;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:93:776,93,0 chrIII 209265 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=10.67;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:908,105,0 chrIII 209321 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=15.01;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1444,168,0 chrIII 209380 . T A 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=10.408;HaplotypeScore=8.7640;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.174;QD=16.48;ReadPosRankSum=2.334;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1434,162,0 chrIII 209617 . T G 1014 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.11;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1047,120,0 chrIII 209634 . T C 917 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=17.63;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:950,111,0 chrIII 209648 . A G 753 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.51;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:786,93,0 chrIII 209687 . G A 702 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=15.60;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:735,84,0 chrIII 209716 . A G 598 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=14.95;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:72:631,72,0 chrIII 209805 . A G 79.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=56;Dels=0.00;FS=29.679;HaplotypeScore=32.5349;MLEAC=1;MLEAF=0.500;MQ=47.51;MQ0=0;MQRankSum=-0.443;QD=1.42;ReadPosRankSum=1.416;SB=-1.473e+02 GT:AD:DP:GQ:PL 0/1:16,39:56:9:109,0,9 chrIII 209856 . T C 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.596;QD=14.89;ReadPosRankSum=1.675;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:941,111,0 chrIII 209910 . T C 1112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.455;QD=22.24;ReadPosRankSum=1.663;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1145,132,0 chrIII 209941 . G C 1165 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.80;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1198,141,0 chrIII 210036 . T C 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.650;QD=20.69;ReadPosRankSum=1.660;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1026,120,0 chrIII 210192 . T C 1110 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=18.20;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1143,132,0 chrIII 210436 . C A 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=6.646;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-0.704;QD=14.24;ReadPosRankSum=2.208;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:90:759,90,0 chrIII 210469 . T C 831 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=98.5838;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.62;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:864,99,0 chrIII 210635 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.04;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1990,231,0 chrIII 210964 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.30;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1071,123,0 chrIII 211159 . T G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.414;QD=19.38;ReadPosRankSum=1.692;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1719,201,0 chrIII 211348 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.01;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1654,186,0 chrIII 211563 . A G 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=7.509;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.928;QD=17.17;ReadPosRankSum=2.408;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2059,240,0 chrIII 211997 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.81;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1250,147,0 chrIII 211998 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=16.13;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1275,147,0 chrIII 212063 . G T 688 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=11.86;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:84:721,84,0 chrIII 212125 . C G 1233 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1266,150,0 chrIII 212415 . A G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=4.171;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.877;QD=21.44;ReadPosRankSum=1.689;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1791,207,0 chrIII 212528 . A T 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.210;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.414;QD=21.56;ReadPosRankSum=1.692;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1909,216,0 chrIII 212724 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.37;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1249,144,0 chrIII 213069 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=19.09;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1694,198,0 chrIII 213185 . G C 1940 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.40;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1973,234,0 chrIII 213542 . T C 1592 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=15.46;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1625,195,0 chrIII 213768 . A G 144.06 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=3.60;SB=-2.507e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:21:177,21,0 chrIII 213859 . G A 344 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=9.83;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:42:377,42,0 chrIII 213865 . A G 272 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.985;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=-0.594;QD=8.24;ReadPosRankSum=3.985;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:7,26:33:36:305,36,0 chrIII 213895 . A G 739 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.78;MQ0=0;QD=19.45;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:772,90,0 chrIII 213973 . T C 2456 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.417;QD=21.36;ReadPosRankSum=2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2489,294,0 chrIII 214145 . A C 1432 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.03;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1465,174,0 chrIII 214574 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.87;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1534,183,0 chrIII 214718 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.590;QD=19.18;ReadPosRankSum=1.618;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1778,210,0 chrIII 214762 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.24;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1740,207,0 chrIII 215005 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.86;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1741,195,0 chrIII 215020 . T G 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.421;QD=18.06;ReadPosRankSum=1.693;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1640,195,0 chrIII 215332 . C T 1451 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=14.51;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1484,174,0 chrIII 215336 . A G 1487 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=14.72;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1520,177,0 chrIII 215341 . A G 1401 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.230;DP=102;Dels=0.00;FS=2.051;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=0.514;QD=13.74;ReadPosRankSum=3.195;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:4,97:102:99:1434,165,0 chrIII 215344 . G A 1514 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.03;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=14.99;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1547,174,0 chrIII 215487 . G T 2310 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.58;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2343,267,0 chrIII 215830 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7389;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.35;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2167,258,0 chrIII 215848 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8967;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=17.84;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2316,261,0 chrIII 215870 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=17.43;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1811,216,0 chrIII 215935 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1436;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.45;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1935,216,0 chrIII 216042 . T C 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.693;QD=19.19;ReadPosRankSum=1.674;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2336,273,0 chrIII 216257 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.6957;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.55;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2360,276,0 chrIII 216352 . T C 2256 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.34;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2289,273,0 chrIII 216400 . A T 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.997;QD=15.47;ReadPosRankSum=1.662;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1611,183,0 chrIII 216424 . G C 1625 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=15.93;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1658,198,0 chrIII 216488 . T G 2320 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.83;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2353,279,0 chrIII 216750 . A C 1193 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.64;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1226,144,0 chrIII 217053 . T C 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=11.377;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.228;QD=19.04;ReadPosRankSum=2.912;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1556,186,0 chrIII 217089 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.65;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1674,192,0 chrIII 217266 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.77;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1478,165,0 chrIII 217293 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.30;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1677,192,0 chrIII 217443 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.39;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1743,198,0 chrIII 217455 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.4684;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.366;QD=14.61;ReadPosRankSum=1.699;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1552,186,0 chrIII 217467 . A C 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=122;Dels=0.00;FS=15.168;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.607;QD=12.94;ReadPosRankSum=3.341;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:4,118:122:99:1612,192,0 chrIII 218035 . C T 898 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.33;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:931,105,0 chrIII 218037 . A G 825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.409;QD=15.00;ReadPosRankSum=1.606;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:858,102,0 chrIII 218143 . C T 1116 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1149,126,0 chrIII 218349 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.138;QD=22.74;ReadPosRankSum=1.683;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1625,195,0 chrIII 219276 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.53;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1367,159,0 chrIII 219318 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.49;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1144,135,0 chrIII 219412 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1638,192,0 chrIII 219477 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.28;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1331,156,0 chrIII 219561 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.60;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1502,168,0 chrIII 220054 . T G 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-0.874;QD=15.83;ReadPosRankSum=-1.414;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1759,207,0 chrIII 220080 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=15.35;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1491,174,0 chrIII 220083 . T C 1353 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=14.24;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1386,162,0 chrIII 220106 . T A 1041 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=11.97;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1074,126,0 chrIII 220112 . A G 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.094;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=0.877;QD=13.00;ReadPosRankSum=1.687;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1034,120,0 chrIII 220158 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.69;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1077,123,0 chrIII 220275 . A G 937 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=16.44;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:970,117,0 chrIII 220281 . C G 859 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=15.34;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:892,105,0 chrIII 220294 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=14.93;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:884,102,0 chrIII 220314 . G C 1192 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=13.86;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1225,147,0 chrIII 220318 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=14.68;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1369,150,0 chrIII 220477 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0449;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.38;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1643,192,0 chrIII 220640 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.19;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1597,192,0 chrIII 221240 . C A 1031 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1064,120,0 chrIII 221702 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.25;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1714,201,0 chrIII 221705 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.713;QD=19.87;ReadPosRankSum=1.651;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1722,201,0 chrIII 222197 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.6016;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.42;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1862,216,0 chrIII 222227 . C G 1392 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.62;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1425,171,0 chrIII 222347 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6456;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.89;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2161,252,0 chrIII 222386 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.91;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2417,288,0 chrIII 222524 . G T 1709 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.35;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1742,198,0 chrIII 222662 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.28;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1460,162,0 chrIII 222746 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=16.27;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1188,132,0 chrIII 223120 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1069,120,0 chrIII 223233 . A T 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.536;QD=18.19;ReadPosRankSum=1.667;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:997,111,0 chrIII 223280 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=19.16;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1240,144,0 chrIII 223523 . A T 1866 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.95;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1899,216,0 chrIII 223676 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.31;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1864,213,0 chrIII 224009 . A G 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.270;QD=17.02;ReadPosRankSum=1.675;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1054,123,0 chrIII 224038 . C T 900 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=16.07;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:933,111,0 chrIII 224288 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=20.2673;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.398;QD=0.57;ReadPosRankSum=1.621;SB=-5.177e+01 GT:AD:DP:GQ:PL 1/1:1,31:33:6:50,6,0 chrIII 224310 . A G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.515;DP=47;Dels=0.00;FS=7.834;HaplotypeScore=10.2031;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.057;QD=17.38;ReadPosRankSum=-1.620;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:4,43:47:99:850,102,0 chrIII 224437 . T C 785 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:96:818,96,0 chrIII 224491 . T C 120.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:18:153,18,0 chrIII 224492 . A G 120.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:18:153,18,0 chrIII 224619 . T C 168.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=18.67;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:201,24,0 chrIII 224620 . A G 172.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=19.11;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:24:205,24,0 chrIII 224623 . T C 170.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.00;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:203,24,0 chrIII 224661 . A G 597 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.56;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:72:630,72,0 chrIII 224674 . T G 788 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:96:821,96,0 chrIII 224693 . G T 1487 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1520,174,0 chrIII 224791 . A G 568 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=20.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:78:601,78,0 chrIII 224793 . A G 569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;MQRankSum=-0.462;QD=18.97;ReadPosRankSum=0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:78:602,78,0 chrIII 224821 . T C 786 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;MQRankSum=-0.365;QD=20.68;ReadPosRankSum=0.274;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:86:819,86,0 chrIII 224861 . T G 978 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;MQRankSum=-0.794;QD=20.37;ReadPosRankSum=1.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1011,129,0 chrIII 224874 . T A 790 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=18.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:823,105,0 chrIII 224899 . A G 344 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=19.11;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:1,17:18:45:377,45,0 chrIII 224924 . T C 349 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.39;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:45:382,45,0 chrIII 224961 . C T 569 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=23.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:69:602,69,0 chrIII 224994 . C T 533 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.32;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:566,66,0 chrIII 225052 . C G 645 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.24;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:78:678,78,0 chrIII 225088 . T C 494 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.03;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:527,66,0 chrIII 225116 . G C 471 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=13.85;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:60:504,60,0 chrIII 225143 . G C 457 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=9.93;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:490,60,0 chrIII 225150 . A T 458 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=9.16;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:57:491,57,0 chrIII 225171 . C T 476 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=8.65;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:509,60,0 chrIII 225173 . G C 469 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=8.53;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:502,60,0 chrIII 225180 . G C 432 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=7.85;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:57:465,57,0 chrIII 225200 . G T 604 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=10.07;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:72:637,72,0 chrIII 225234 . A G 1014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=8.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=1.678;QD=15.84;ReadPosRankSum=2.373;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1047,123,0 chrIII 225256 . C G 1186 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.83;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1219,141,0 chrIII 225343 . T A 707 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=36.1551;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.67;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:740,84,0 chrIII 225522 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.45;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1638,195,0 chrIII 225531 . A C 1822 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.38;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1855,219,0 chrIII 225558 . G C 2249 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.90;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2282,264,0 chrIII 225710 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.594;QD=21.14;ReadPosRankSum=1.697;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2147,252,0 chrIII 226156 . G T 2282 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.11;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2315,267,0 chrIII 226701 . C G 1534 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.42;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1567,180,0 chrIII 226753 . A G 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.724;QD=16.13;ReadPosRankSum=1.688;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1307,159,0 chrIII 226774 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=13.36;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1142,135,0 chrIII 227514 . G A 884 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=15.79;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:917,105,0 chrIII 227570 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.60;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:966,108,0 chrIII 227581 . A T 980 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.60;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1013,114,0 chrIII 227763 . C A 1094 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=22.33;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1127,126,0 chrIII 227839 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.63;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1106,132,0 chrIII 227865 . C G 1081 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.30;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1114,129,0 chrIII 227866 . T G 1031 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.41;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1064,123,0 chrIII 227879 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=18.04;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:917,111,0 chrIII 228047 . A T 411 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;MQRankSum=-1.523;QD=11.11;ReadPosRankSum=1.628;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:54:444,54,0 chrIII 228054 . T A 385 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;MQRankSum=-1.516;QD=12.03;ReadPosRankSum=1.625;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:54:418,54,0 chrIII 228055 . T A 407 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;MQRankSum=-0.108;QD=12.72;ReadPosRankSum=1.625;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:54:440,54,0 chrIII 228062 . C T 329 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=16.45;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:42:362,42,0 chrIII 228063 . A T 306 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=15.30;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:339,39,0 chrIII 228065 . C A 267 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=14.05;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:300,36,0 chrIII 228071 . T C 325 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.56;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:358,42,0 chrIII 228130 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.59;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:962,114,0 chrIII 228176 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.77;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:93:815,93,0 chrIII 228291 . C A 873 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.59;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:99:906,102,0 chrIII 228338 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.08;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1045,120,0 chrIII 228554 . T C 2868 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.9560;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.41;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2901,342,0 chrIII 228632 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.41;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1768,204,0 chrIII 228849 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=16.18;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1635,189,0 chrIII 229345 . T G 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.355;QD=18.42;ReadPosRankSum=2.338;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1249,144,0 chrIII 230047 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.32;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1577,174,0 chrIII 230267 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.682;QD=20.67;ReadPosRankSum=1.682;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1459,168,0 chrIII 230560 . A G 1329 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.54;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1362,165,0 chrIII 230773 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.3092;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.71;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1162,132,0 chrIII 231037 . C T 411 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=9.3819;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=9.34;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:444,51,0 chrIII 231691 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.78;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2090,234,0 chrIII 231858 . G T 1272 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.43;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1305,147,0 chrIII 231898 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.58;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1208,144,0 chrIII 232537 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.54;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1972,225,0 chrIII 232890 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.80;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:923,108,0 chrIII 232933 . A G 941 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.02;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:974,114,0 chrIII 233158 . G T 2136 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.13;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2169,249,0 chrIII 233245 . T C 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.565;QD=22.92;ReadPosRankSum=2.889;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1477,174,0 chrIII 233301 . G T 1533 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.90;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1566,180,0 chrIII 233360 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.78;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1906,213,0 chrIII 233404 . C A 1817 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.75;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1850,210,0 chrIII 233424 . C G 1858 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.40;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1891,222,0 chrIII 233531 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.91;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2226,261,0 chrIII 233654 . A G 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.651;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.257;QD=16.83;ReadPosRankSum=1.698;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1750,210,0 chrIII 233678 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.95;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2387,267,0 chrIII 233783 . G A 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;DP=116;Dels=0.00;FS=7.311;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=52.29;MQ0=0;MQRankSum=-4.488;QD=1.92;ReadPosRankSum=-1.350;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:69,47:116:99:253,0,1090 chrIII 233797 . A C 337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.544;DP=113;Dels=0.00;FS=4.687;HaplotypeScore=4.9099;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-3.845;QD=2.98;ReadPosRankSum=2.036;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:57,56:113:99:367,0,853 chrIII 233803 . A G 383.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;DP=115;Dels=0.00;FS=0.710;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=50.11;MQ0=0;MQRankSum=-3.858;QD=3.33;ReadPosRankSum=2.790;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:52,63:115:99:413,0,584 chrIII 233813 . A G 495.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.491;DP=117;Dels=0.00;FS=4.905;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=0;MQRankSum=-2.276;QD=4.23;ReadPosRankSum=3.987;SB=-4.600e+02 GT:AD:DP:GQ:PL 0/1:44,73:117:99:525,0,495 chrIII 233870 . T C 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.950;QD=14.23;ReadPosRankSum=1.695;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1356,156,0 chrIII 233910 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=16.21;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1476,174,0 chrIII 233911 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7250;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.62;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1529,177,0 chrIII 233941 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=15.64;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1394,159,0 chrIII 234004 . T A 1932 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.58;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1965,225,0 chrIII 234551 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.57;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1314,156,0 chrIII 234608 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=16.76;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1206,138,0 chrIII 234617 . G C 1006 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=14.79;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1039,123,0 chrIII 234626 . A G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=-1.732;QD=15.05;ReadPosRankSum=1.685;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1132,132,0 chrIII 234679 . T A 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.664;DP=87;Dels=0.00;FS=10.644;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=1.291;QD=14.00;ReadPosRankSum=2.919;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1251,125,0 chrIII 234688 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=14.44;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1289,147,0 chrIII 234696 . T G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0925;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.645;QD=15.34;ReadPosRankSum=1.692;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1352,159,0 chrIII 234792 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.55;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1597,180,0 chrIII 234883 . C A 1016 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=14.51;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1049,123,0 chrIII 234928 . T C 143.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5165;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=-1.399;QD=2.75;ReadPosRankSum=1.666;SB=-4.481e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:21:176,21,0 chrIII 235062 . C T 1521 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.48;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1554,180,0 chrIII 235065 . C T 1388 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.95;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1421,168,0 chrIII 235070 . G T 1459 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.21;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1492,168,0 chrIII 235153 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.55;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1489,174,0 chrIII 235155 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=16.71;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1520,180,0 chrIII 235472 . A G 1529 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.37;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1562,186,0 chrIII 235561 . T A 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.540;QD=17.82;ReadPosRankSum=1.588;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1316,153,0 chrIII 235639 . T A 1322 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.89;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1355,156,0 chrIII 235645 . T C 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.708;QD=18.82;ReadPosRankSum=1.683;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1369,159,0 chrIII 235669 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.00;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1239,141,0 chrIII 236387 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.98;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1374,153,0 chrIII 236696 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.17;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1164,138,0 chrIII 236740 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.79;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:798,93,0 chrIII 238082 . T C 2514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=4.311;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.369;QD=17.46;ReadPosRankSum=1.708;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2547,294,0 chrIII 238731 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.157;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.624;QD=14.51;ReadPosRankSum=1.649;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:1876,222,0 chrIII 239007 . G T 2358 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.2417;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.86;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2391,270,0 chrIII 239515 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.808;QD=18.33;ReadPosRankSum=1.686;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1408,162,0 chrIII 239657 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2491;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.05;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1602,192,0 chrIII 239708 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.47;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1746,204,0 chrIII 239717 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=16.55;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1572,186,0 chrIII 240337 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.96;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1732,195,0 chrIII 240607 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.03;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1187,132,0 chrIII 240608 . T A 1109 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.60;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1142,129,0 chrIII 240922 . T C 993 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.05;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1026,120,0 chrIII 241039 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.84;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1955,228,0 chrIII 241156 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.62;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2446,279,0 chrIII 241765 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=16.78;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1996,228,0 chrIII 241777 . A G 1980 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.50;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2013,237,0 chrIII 241810 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.9349;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.395;QD=16.78;ReadPosRankSum=1.701;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:1963,228,0 chrIII 242483 . G A 970 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=15.65;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1003,117,0 chrIII 242882 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.420;QD=18.28;ReadPosRankSum=1.701;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2062,249,0 chrIII 242912 . C G 2077 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.31;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2110,252,0 chrIII 243218 . C G 2558 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.14;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2591,300,0 chrIII 243728 . A T 1709 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.12;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1742,204,0 chrIII 243803 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2174,252,0 chrIII 243980 . A T 1740 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.51;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1773,207,0 chrIII 244281 . G T 1353 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.19;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1386,159,0 chrIII 244493 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.04;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1496,174,0 chrIII 244604 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.53;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1330,156,0 chrIII 244643 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.43;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1216,144,0 chrIII 245054 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.45;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1150,132,0 chrIII 245066 . G A 1097 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.88;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1130,129,0 chrIII 245261 . C A 936 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:969,114,0 chrIII 245299 . C A 897 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:930,105,0 chrIII 245377 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.78;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1449,168,0 chrIII 245464 . T C 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.187;QD=21.57;ReadPosRankSum=1.498;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1629,189,0 chrIII 245631 . C A 1307 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.78;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1340,147,0 chrIII 245750 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.78;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1378,165,0 chrIII 245869 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.19;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1668,192,0 chrIII 246171 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.78;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1526,183,0 chrIII 246364 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.3894;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.25;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1621,183,0 chrIII 246581 . C T 667 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=14.50;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:700,81,0 chrIII 246789 . C A 699 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=12.94;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:732,87,0 chrIII 246793 . T C 703 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.52;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:87:736,87,0 chrIII 246803 . A G 746 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=13.81;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:90:779,90,0 chrIII 246813 . T G 821 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=13.46;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:854,99,0 chrIII 246853 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.56;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1192,135,0 chrIII 247418 . A G 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4880;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.324;QD=18.01;ReadPosRankSum=1.704;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2248,261,0 chrIII 247889 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=15.85;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,122:124:99:1999,231,0 chrIII 248057 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.93;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1804,204,0 chrIII 248528 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.56;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2361,267,0 chrIII 249285 . A C 1866 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=16.23;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1899,225,0 chrIII 249286 . C T 1823 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=15.85;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1856,219,0 chrIII 249290 . C A 1949 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=17.40;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1982,225,0 chrIII 249338 . A C 250 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=2.27;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:33:283,33,0 chrIII 249499 . C G 1441 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.47;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1474,180,0 chrIII 249541 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.53;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1293,159,0 chrIII 249923 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.21;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1387,162,0 chrIII 250253 . T A 621 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.03;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:654,75,0 chrIII 251323 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1380,159,0 chrIII 251657 . T C 1098 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.64;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1131,132,0 chrIII 251945 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.03;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1764,210,0 chrIII 252269 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6126;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.45;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2601,303,0 chrIII 252425 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.87;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1602,192,0 chrIII 252911 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2066,243,0 chrIII 253015 . G T 1660 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.00;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1693,189,0 chrIII 254181 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.15;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1524,171,0 chrIII 254715 . G A 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.242;QD=16.36;ReadPosRankSum=0.367;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1653,198,0 chrIII 254947 . G T 1637 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.72;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1670,186,0 chrIII 255400 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.24;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1855,222,0 chrIII 255675 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.51;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1946,222,0 chrIII 255891 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.54;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1331,150,0 chrIII 256779 . T C 954 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.35;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:987,117,0 chrIII 257049 . T C 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.000;QD=20.55;ReadPosRankSum=1.684;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1533,177,0 chrIII 257397 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.29;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,201,0 chrIII 257531 . C G 1683 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.04;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1716,201,0 chrIII 257592 . T G 1172 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.86;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1205,141,0 chrIII 257721 . A T 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=12.0182;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.78;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,195,0 chrIII 257960 . T C 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.133;QD=19.50;ReadPosRankSum=1.643;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1554,186,0 chrIII 258066 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.46;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1695,198,0 chrIII 258276 . C T 2680 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.9615;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.91;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2713,306,0 chrIII 258306 . G C 2217 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.53;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2250,264,0 chrIII 258435 . A C 1634 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.50;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1667,195,0 chrIII 258712 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.252;QD=22.83;ReadPosRankSum=1.638;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2567,303,0 chrIII 258780 . T G 2046 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2079,240,0 chrIII 258847 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1496,171,0 chrIII 258915 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1424,168,0 chrIII 259351 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.84;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1058,117,0 chrIII 259489 . A G 812 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:96:845,96,0 chrIII 259496 . T C 639 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=15.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:81:672,81,0 chrIII 259631 . A T 1142 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.04;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1175,135,0 chrIII 259724 . T C 930 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.88;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:963,111,0 chrIII 259975 . G A 490 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=11.14;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:60:523,60,0 chrIII 261672 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.27;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1189,141,0 chrIII 261964 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.57;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1519,177,0 chrIII 262154 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.7484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.71;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1687,192,0 chrIII 262618 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.26;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1362,159,0 chrIII 262841 . A G 1075 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1108,129,0 chrIII 262954 . T A 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=103.5554;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.636;QD=22.17;ReadPosRankSum=2.935;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2427,273,0 chrIII 263029 . A G 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.522;QD=21.27;ReadPosRankSum=1.677;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1373,156,0 chrIII 263059 . C G 780 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.14;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:96:813,96,0 chrIII 264216 . G C 652 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=116.7697;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.16;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:685,81,0 chrIII 264441 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.61;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1950,228,0 chrIII 264634 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.46;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2072,231,0 chrIII 264642 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.841;QD=19.67;ReadPosRankSum=2.926;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1902,222,0 chrIII 265240 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.26;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1448,171,0 chrIII 265556 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1407,162,0 chrIII 265721 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.23;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1456,174,0 chrIII 266048 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.86;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1681,192,0 chrIII 266110 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.45;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1608,180,0 chrIII 266282 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=13.70;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1143,129,0 chrIII 266283 . G C 1120 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=13.18;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1153,135,0 chrIII 266699 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=15.66;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1082,129,0 chrIII 266863 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.67;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1567,183,0 chrIII 266890 . A C 2193 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.76;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2226,261,0 chrIII 267008 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1451,165,0 chrIII 267101 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.24;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1378,156,0 chrIII 267108 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=16.48;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1203,135,0 chrIII 267157 . A G 1082 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=15.68;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1115,132,0 chrIII 267162 . G A 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=15.40;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1142,129,0 chrIII 267166 . T C 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.01;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1084,126,0 chrIII 267271 . A C 1623 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.87;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1656,195,0 chrIII 267339 . A G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=3.063;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.324;QD=19.17;ReadPosRankSum=2.388;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1586,189,0 chrIII 267413 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=16.40;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1263,147,0 chrIII 267457 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.37;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1301,153,0 chrIII 267542 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.05;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1119,129,0 chrIII 267682 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.52;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1385,162,0 chrIII 267793 . C G 1621 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.53;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1654,201,0 chrIII 267916 . G T 685 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=12.92;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:718,81,0 chrIII 268012 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.59;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1316,150,0 chrIII 268066 . C A 1403 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.76;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1436,168,0 chrIII 268449 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.79;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1705,195,0 chrIII 268657 . G A 1745 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=11;QD=16.31;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1778,195,0 chrIII 268696 . T C 1043 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.317;DP=110;Dels=0.00;FS=18.262;HaplotypeScore=11.3505;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=23;MQRankSum=-2.948;QD=9.48;ReadPosRankSum=2.808;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:13,97:110:81:1076,81,0 chrIII 268711 . C T 726 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=26;QD=8.25;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:3,83:88:90:759,90,0 chrIII 268732 . T C 704 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=31;QD=7.65;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:7,85:92:87:737,87,0 chrIII 268753 . G A 823 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=25;QD=8.76;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:856,99,0 chrIII 268864 . T G 2717 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.43;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2750,324,0 chrIII 268943 . A T 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=3.139;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=2;MQRankSum=-0.555;QD=14.70;ReadPosRankSum=1.698;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1591,186,0 chrIII 268945 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=2;QD=14.85;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1577,180,0 chrIII 268966 . C T 1710 filter AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=4;QD=14.13;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1743,198,0 chrIII 268984 . G A 1279 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=8;QD=11.52;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1312,150,0 chrIII 269080 . G A 1174 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=26;QD=12.76;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1207,138,0 chrIII 269158 . C A 1818 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=9;QD=16.23;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1851,210,0 chrIII 269168 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=1;QD=16.37;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1834,207,0 chrIII 269179 . C T 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=4.616;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=1.606;QD=14.75;ReadPosRankSum=1.480;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1655,195,0 chrIII 269224 . A G 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.263;QD=14.92;ReadPosRankSum=1.677;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:1943,231,0 chrIII 269359 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3971;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-0.935;QD=13.65;ReadPosRankSum=1.701;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,112:116:99:1616,189,0 chrIII 269369 . T A 1657 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=15.06;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1690,189,0 chrIII 269395 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=13.37;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1570,183,0 chrIII 269495 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=103;Dels=0.00;FS=7.476;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=1.475;QD=19.60;ReadPosRankSum=2.304;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:2052,240,0 chrIII 269719 . G C 1850 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.14;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1883,225,0 chrIII 269744 . T A 1828 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.75;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1861,207,0 chrIII 269842 . T C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;MQRankSum=0.811;QD=18.71;ReadPosRankSum=1.695;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1848,219,0 chrIII 269874 . T C 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=0.293;QD=16.26;ReadPosRankSum=1.679;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1090,129,0 chrIII 269911 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=17.52;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1014,123,0 chrIII 269921 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=17.36;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1092,132,0 chrIII 269952 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.70;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1267,150,0 chrIII 269990 . A T 1266.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.643;DP=163;Dels=0.00;FS=4.748;HaplotypeScore=155.7488;MLEAC=1;MLEAF=0.500;MQ=40.78;MQ0=0;MQRankSum=4.711;QD=7.77;ReadPosRankSum=-0.002;SB=-9.505e+02 GT:AD:DP:GQ:PL 0/1:64,99:163:1:1295,0,1 chrIII 270018 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=154.9745;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=7.18;SB=-2.529e+03 GT:AD:DP:GQ:PL 1/1:0,216:219:99:1606,177,0 chrIII 270052 . C T 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=191;Dels=0.00;FS=21.475;HaplotypeScore=105.4552;MLEAC=1;MLEAF=0.500;MQ=34.74;MQ0=0;MQRankSum=0.042;QD=0.27;ReadPosRankSum=-3.175;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:151,40:191:81:81,0,1037 chrIII 270055 . G A 599.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;DP=184;Dels=0.00;FS=6.336;HaplotypeScore=99.0157;MLEAC=1;MLEAF=0.500;MQ=34.51;MQ0=0;MQRankSum=-3.538;QD=3.26;ReadPosRankSum=-1.634;SB=-8.030e+02 GT:AD:DP:GQ:PL 0/1:84,99:184:99:629,0,445 chrIII 270058 . T G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.378;DP=176;Dels=0.00;FS=28.183;HaplotypeScore=94.6434;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-1.528;QD=0.15;ReadPosRankSum=-4.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,33:176:56:56,0,1061 chrIII 270062 . A G 497.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459;DP=166;Dels=0.00;FS=23.717;HaplotypeScore=84.1447;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=0;MQRankSum=-5.872;QD=2.99;ReadPosRankSum=-4.166;SB=-7.100e+02 GT:AD:DP:GQ:PL 0/1:56,109:166:99:527,0,429 chrIII 270065 . G A 477.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;DP=162;Dels=0.00;FS=28.610;HaplotypeScore=57.4960;MLEAC=1;MLEAF=0.500;MQ=35.50;MQ0=0;MQRankSum=-4.921;QD=2.94;ReadPosRankSum=-5.131;SB=-6.120e+02 GT:AD:DP:GQ:PL 0/1:56,105:162:99:507,0,494 chrIII 270074 . A G 200.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.275;DP=130;Dels=0.00;FS=31.379;HaplotypeScore=7.2961;MLEAC=1;MLEAF=0.500;MQ=38.93;MQ0=0;MQRankSum=-5.533;QD=1.54;ReadPosRankSum=-4.884;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:64,63:130:99:230,0,776 chrIII 270078 . T C 93.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;DP=126;Dels=0.00;FS=36.914;HaplotypeScore=7.2961;MLEAC=1;MLEAF=0.500;MQ=40.04;MQ0=0;MQRankSum=-5.371;QD=0.74;ReadPosRankSum=-6.367;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:69,57:126:99:123,0,820 chrIII 270139 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=18.93;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1453,168,0 chrIII 270295 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.73;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1783,207,0 chrIII 270367 . T C 885 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=15.80;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:918,105,0 chrIII 270414 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.59;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1045,120,0 chrIII 270531 . C A 1641 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.77;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1674,189,0 chrIII 270582 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.98;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1459,171,0 chrIII 271106 . G A 4301.01 PASS AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=17.6023;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.19;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,203:203:99:4301,480,0 chrIII 271180 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=15.47;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2230,261,0 chrIII 271181 . C A 2240 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=16.00;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2273,270,0 chrIII 271313 . T A 3483.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=181;Dels=0.00;FS=2.891;HaplotypeScore=19.3841;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.269;QD=19.24;ReadPosRankSum=0.346;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:2,179:181:99:3483,387,0 chrIII 271340 . G A 3289.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=14.1086;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.90;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:3289,378,0 chrIII 271512 . T C 3617.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=213;Dels=0.00;FS=6.082;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.536;QD=16.98;ReadPosRankSum=2.150;SB=-2.472e+03 GT:AD:DP:GQ:PL 1/1:2,211:213:99:3617,429,0 chrIII 271594 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=192;Dels=0.00;FS=9.449;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.332;QD=18.42;ReadPosRankSum=2.932;SB=-2.212e+03 GT:AD:DP:GQ:PL 1/1:3,188:192:99:3536,422,0 chrIII 271744 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.0696;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.12;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2772,330,0 chrIII 271775 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=147;Dels=0.00;FS=4.290;HaplotypeScore=9.8067;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.087;QD=17.07;ReadPosRankSum=1.708;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2543,297,0 chrIII 271865 . A G 3285.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.104;QD=19.67;ReadPosRankSum=1.711;SB=-1.941e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3285,378,0 chrIII 272072 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.72;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1699,192,0 chrIII 272125 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.39;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1424,159,0 chrIII 272348 . A G 2557 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.13;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2590,314,0 chrIII 272657 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.14;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2319,261,0 chrIII 272931 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.752;QD=19.78;ReadPosRankSum=1.667;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1101,129,0 chrIII 272974 . C G 1079 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.29;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1112,132,0 chrIII 272975 . A C 1129 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.14;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1162,135,0 chrIII 272988 . A G 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=65;Dels=0.00;FS=5.363;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.150;QD=16.22;ReadPosRankSum=2.880;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:4,61:65:99:1087,129,0 chrIII 273072 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=14.67;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:972,111,0 chrIII 273250 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.03;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:643,75,0 chrIII 273260 . C T 730 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.86;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:763,84,0 chrIII 273348 . A T 624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.924;QD=20.13;ReadPosRankSum=1.617;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:72:657,72,0 chrIII 273367 . T A 679 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.58;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:712,81,0 chrIII 273435 . C A 1206 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.93;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1239,138,0 chrIII 273450 . A T 1215 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.92;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1248,144,0 chrIII 273452 . T G 1217 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.63;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1250,144,0 chrIII 273723 . T G 1165 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=20.44;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1198,144,0 chrIII 273787 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=21.34;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1527,171,0 chrIII 273828 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=19.58;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1110,126,0 chrIII 273835 . T G 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=3.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.449;QD=17.19;ReadPosRankSum=1.668;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:961,111,0 chrIII 273881 . G A 832 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=14.34;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:865,102,0 chrIII 273911 . C G 1116 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2071;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.92;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1149,135,0 chrIII 273985 . A G 999 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.16;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1032,120,0 chrIII 274002 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.834;QD=18.33;ReadPosRankSum=1.668;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1023,117,0 chrIII 274039 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=15.00;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1038,117,0 chrIII 274077 . T A 895 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=13.36;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:928,105,0 chrIII 274091 . G A 846 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=12.82;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:879,105,0 chrIII 274100 . T A 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;MQRankSum=-0.914;QD=12.26;ReadPosRankSum=1.684;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:916,105,0 chrIII 274122 . A C 595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;MQRankSum=-1.176;QD=10.62;ReadPosRankSum=1.670;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:628,72,0 chrIII 274124 . T A 586 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=10.65;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:619,72,0 chrIII 274137 . A G 550 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=9.82;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:583,69,0 chrIII 274173 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=12.58;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:788,93,0 chrIII 274250 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.19;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1914,219,0 chrIII 274321 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.26;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2584,303,0 chrIII 274433 . A C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.095;QD=20.73;ReadPosRankSum=1.694;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1919,219,0 chrIII 274530 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.20;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1635,195,0 chrIII 274645 . T C 2493 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2275;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.60;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2526,297,0 chrIII 274679 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.04;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2126,249,0 chrIII 275018 . A C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=126;Dels=0.00;FS=2.956;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.751;QD=18.67;ReadPosRankSum=2.352;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2385,282,0 chrIII 275216 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6201;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.95;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2421,276,0 chrIII 275486 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.5370;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.09;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1369,159,0 chrIII 275765 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=15.78;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:759,90,0 chrIII 276586 . A G 761 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:794,93,0 chrIII 276617 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1194,138,0 chrIII 276731 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=48;Dels=0.00;FS=4.960;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.290;QD=20.69;ReadPosRankSum=1.511;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1026,120,0 chrIII 276792 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1116,126,0 chrIII 277187 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9996;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.80;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1606,180,0 chrIII 277280 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1406,165,0 chrIII 277564 . G T 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=69;Dels=0.00;FS=80.345;HaplotypeScore=4.7299;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=0.290;QD=2.06;ReadPosRankSum=-4.915;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,18:69:99:172,0,545 chrIII 277580 . A G 710 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=12.03;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:87:743,87,0 chrIII 278153 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1010,117,0 chrIII 278462 . T A 1224 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.27;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1257,150,0 chrIII 278872 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2304,264,0 chrIII 278927 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.44;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2057,243,0 chrIII 279108 . C G 1580 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.79;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1613,189,0 chrIII 279149 . T C 1676 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9710;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.42;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1709,204,0 chrIII 279350 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.14;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1184,138,0 chrIII 279627 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.12;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2206,246,0 chrIII 279859 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.08;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1780,210,0 chrIII 280381 . C T 626 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:72:659,72,0 chrIII 280794 . A G 1084 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1117,135,0 chrIII 280971 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.85;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1767,207,0 chrIII 281388 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.12;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2103,240,0 chrIII 281466 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.15;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1665,189,0 chrIII 281666 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.61;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1935,228,0 chrIII 281752 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1787,201,0 chrIII 281823 . A T 2250 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.44;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2283,258,0 chrIII 282552 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.12;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1490,174,0 chrIII 282696 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.14;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1124,132,0 chrIII 282703 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.33;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1212,141,0 chrIII 282870 . T A 1041 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.95;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1074,126,0 chrIII 282907 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=15.60;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:657,75,0 chrIII 283431 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.60;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1758,204,0 chrIII 283554 . T C 1588 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.36;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1621,186,0 chrIII 283959 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.23;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1845,210,0 chrIII 284105 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1766,198,0 chrIII 284190 . A C 1507 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.03;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1540,183,0 chrIII 284346 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.35;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1910,216,0 chrIII 284523 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=74;Dels=0.00;FS=6.451;HaplotypeScore=7.8927;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.524;QD=19.43;ReadPosRankSum=2.315;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1471,171,0 chrIII 284669 . T C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.322;QD=20.33;ReadPosRankSum=1.692;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1842,216,0 chrIII 284830 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1759,198,0 chrIII 285080 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.09;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2087,234,0 chrIII 285783 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1640,189,0 chrIII 285885 . A C 1166 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.15;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1199,144,0 chrIII 286611 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1797,201,0 chrIII 287064 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.32;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1308,150,0 chrIII 287188 . A T 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=41;Dels=0.00;FS=4.221;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.890;QD=20.54;ReadPosRankSum=1.639;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:875,99,0 chrIII 287275 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.76;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1558,174,0 chrIII 287526 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.524;QD=20.58;ReadPosRankSum=1.652;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1803,216,0 chrIII 287614 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.86;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2088,243,0 chrIII 287802 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.28;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1847,216,0 chrIII 288008 . G C 1006 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.53;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1039,120,0 chrIII 288246 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.35;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1091,123,0 chrIII 288380 . T A 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.678;QD=23.09;ReadPosRankSum=1.682;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1626,183,0 chrIII 288455 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.1772;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.42;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1374,162,0 chrIII 289278 . T G 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.237;QD=21.57;ReadPosRankSum=1.662;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1090,126,0 chrIII 289419 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.61;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1033,117,0 chrIII 289790 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=5.752;HaplotypeScore=5.7841;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.622;QD=20.46;ReadPosRankSum=1.658;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1956,231,0 chrIII 289856 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1157;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.60;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1459,168,0 chrIII 289884 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.23;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1674,192,0 chrIII 290208 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.115;QD=19.66;ReadPosRankSum=1.590;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1488,180,0 chrIII 290265 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=2.888;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.174;QD=21.24;ReadPosRankSum=2.392;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1838,213,0 chrIII 290295 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=5.704;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.732;QD=17.58;ReadPosRankSum=1.645;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2125,249,0 chrIII 290329 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=14.16;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1675,195,0 chrIII 290337 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7001;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=14.97;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1710,192,0 chrIII 290447 . C G 1545 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.76;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1578,183,0 chrIII 291045 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.01;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1714,195,0 chrIII 291194 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=87.4987;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=12.64;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1322,159,0 chrIII 291202 . C A 81.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5493;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=0;MQRankSum=0.566;QD=0.82;ReadPosRankSum=-4.469;SB=-4.052e+01 GT:AD:DP:GQ:PL 0/1:91,9:100:6:111,0,6 chrIII 291211 . T A 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;DP=105;Dels=0.00;FS=2.873;HaplotypeScore=7.5446;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;MQRankSum=-2.067;QD=9.10;ReadPosRankSum=2.259;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:989,117,0 chrIII 291220 . A G 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=8.775;HaplotypeScore=5.3080;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;MQRankSum=-0.496;QD=10.41;ReadPosRankSum=2.393;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:939,111,0 chrIII 291282 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.03;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1310,153,0 chrIII 291321 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7384;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.94;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1253,150,0 chrIII 291558 . G T 407 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=20.1154;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=0.867;QD=11.31;ReadPosRankSum=-1.114;SB=-6.570e-03 GT:AD:DP:GQ:PL 1/1:1,32:36:48:440,48,0 chrIII 291695 . A T 1658 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1691,195,0 chrIII 291888 . T C 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.642;QD=22.43;ReadPosRankSum=1.668;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1244,144,0 chrIII 292182 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.70;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1080,120,0 chrIII 292183 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.21;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1053,117,0 chrIII 292197 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.16;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:941,114,0 chrIII 292449 . C T 370 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=21.5721;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.42;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:403,45,0 chrIII 292937 . C T 456 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.71;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:489,54,0 chrIII 293013 . A G 490 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=21.30;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:60:523,60,0 chrIII 293855 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.7748;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=19.45;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2697,315,0 chrIII 294389 . A T 1947 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.67;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1980,231,0 chrIII 294569 . C A 2027 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=6;QD=17.03;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2060,237,0 chrIII 294636 . T A 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=2.930;QD=16.73;ReadPosRankSum=2.647;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1706,192,0 chrIII 294669 . T A 2009 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.15;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2042,231,0 chrIII 294739 . T A 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=5.933;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=1.697;QD=18.60;ReadPosRankSum=1.661;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1856,216,0 chrIII 294801 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=18.05;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1098,126,0 chrIII 294854 . T A 367 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=14.68;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:45:400,45,0 chrIII 294950 . T C 322 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.10;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:355,42,0 chrIII 295103 . G A 353 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=10.70;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:45:386,45,0 chrIII 295252 . G C 155.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DP=85;Dels=0.00;FS=29.388;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-0.893;QD=1.82;ReadPosRankSum=-2.511;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:41,44:85:99:185,0,442 chrIII 295257 . T C 355.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;DP=91;Dels=0.00;FS=26.390;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.16;MQ0=0;MQRankSum=-0.148;QD=3.90;ReadPosRankSum=2.559;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,38:91:99:385,0,248 chrIII 295260 . T G 293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.932;DP=91;Dels=0.00;FS=25.472;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=0;MQRankSum=0.045;QD=3.22;ReadPosRankSum=2.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,36:91:99:323,0,291 chrIII 295261 . A G 305.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.213;DP=90;Dels=0.00;FS=25.776;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.05;MQ0=0;MQRankSum=-0.614;QD=3.39;ReadPosRankSum=2.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,36:90:99:335,0,353 chrIII 295267 . C A 355.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DP=101;Dels=0.00;FS=38.897;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=0;MQRankSum=-0.327;QD=3.51;ReadPosRankSum=-0.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,42:101:99:385,0,527 chrIII 295277 . T A 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.474;DP=96;Dels=0.00;FS=37.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.98;MQ0=0;MQRankSum=-2.302;QD=2.34;ReadPosRankSum=-1.467;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,34:96:99:255,0,678 chrIII 295278 . A G 241.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=96;Dels=0.00;FS=37.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.98;MQ0=0;MQRankSum=-1.507;QD=2.51;ReadPosRankSum=-2.097;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,34:96:99:271,0,652 chrIII 295280 . T C 714.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=97;Dels=0.00;FS=39.790;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.89;MQ0=0;MQRankSum=2.854;QD=7.36;ReadPosRankSum=1.992;SB=-4.700e+02 GT:AD:DP:GQ:PL 0/1:34,63:97:99:744,0,257 chrIII 295285 . T C 789.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.265;DP=94;Dels=0.00;FS=35.596;HaplotypeScore=3.3576;MLEAC=1;MLEAF=0.500;MQ=40.27;MQ0=0;MQRankSum=0.750;QD=8.39;ReadPosRankSum=2.283;SB=-4.800e+02 GT:AD:DP:GQ:PL 0/1:30,64:94:99:819,0,120 chrIII 295287 . T A 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.065;DP=93;Dels=0.00;FS=26.051;HaplotypeScore=19.2082;MLEAC=1;MLEAF=0.500;MQ=40.74;MQ0=0;MQRankSum=-1.322;QD=0.72;ReadPosRankSum=-0.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,23:93:97:97,0,813 chrIII 295289 . C T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.380;DP=94;Dels=0.00;FS=29.057;HaplotypeScore=20.0404;MLEAC=1;MLEAF=0.500;MQ=40.99;MQ0=0;MQRankSum=-2.770;QD=0.66;ReadPosRankSum=-0.317;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,23:94:92:92,0,857 chrIII 295294 . C A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.739;DP=94;Dels=0.00;FS=32.100;HaplotypeScore=21.8207;MLEAC=1;MLEAF=0.500;MQ=41.35;MQ0=0;MQRankSum=-3.361;QD=0.30;ReadPosRankSum=-1.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,23:94:58:58,0,950 chrIII 295306 . A T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;DP=91;Dels=0.00;FS=26.392;HaplotypeScore=21.4148;MLEAC=1;MLEAF=0.500;MQ=43.82;MQ0=0;MQRankSum=-2.376;QD=0.43;ReadPosRankSum=-2.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,18:91:69:69,0,1056 chrIII 295317 . T C 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=91;Dels=0.00;FS=2.581;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-1.745;QD=17.51;ReadPosRankSum=2.901;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1626,192,0 chrIII 295441 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.43;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1364,162,0 chrIII 295464 . A T 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;MQRankSum=1.091;QD=17.07;ReadPosRankSum=1.689;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1416,159,0 chrIII 295565 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.97;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1151,138,0 chrIII 295645 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.43;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1480,174,0 chrIII 295712 . T C 1934 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.98;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1967,231,0 chrIII 295739 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.12;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1913,225,0 chrIII 296219 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.55;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2176,246,0 chrIII 296327 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=88;Dels=0.00;FS=9.252;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.659;QD=17.44;ReadPosRankSum=3.293;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:4,83:88:99:1568,183,0 chrIII 296351 . G T 1673 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=17.61;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1706,195,0 chrIII 296384 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.39;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1633,183,0 chrIII 296406 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.70;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2101,234,0 chrIII 296597 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.41;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1789,210,0 chrIII 296603 . C A 1672 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.71;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1705,195,0 chrIII 296655 . C G 1388 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.83;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1421,171,0 chrIII 296689 . C A 1134 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.59;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1167,135,0 chrIII 296738 . C T 820 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.64;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:853,96,0 chrIII 296743 . T C 867 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=20.64;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:900,102,0 chrIII 296757 . A G 751 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.77;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:784,90,0 chrIII 296914 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.42;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1932,216,0 chrIII 296948 . A G 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=12.618;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.477;QD=20.73;ReadPosRankSum=2.381;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1505,183,0 chrIII 297070 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.64;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1021,120,0 chrIII 297325 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.89;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1783,207,0 chrIII 297334 . C T 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7829;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.696;QD=18.72;ReadPosRankSum=0.089;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1849,213,0 chrIII 297562 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.55;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1688,201,0 chrIII 297699 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.01;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1700,198,0 chrIII 297724 . G T 1445 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.06;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1478,171,0 chrIII 297784 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.42;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1374,165,0 chrIII 297796 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=16.63;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1380,162,0 chrIII 298117 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.06;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1405,165,0 chrIII 298326 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.23;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2007,225,0 chrIII 298441 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.18;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1669,192,0 chrIII 298732 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.92;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1528,174,0 chrIII 298764 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.31;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1861,207,0 chrIII 298878 . C G 2207 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2240,270,0 chrIII 299184 . C A 2206 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.38;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2239,252,0 chrIII 299524 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=13.26;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1160,135,0 chrIII 299847 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.05;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1157,138,0 chrIII 299871 . C T 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.439;QD=21.52;ReadPosRankSum=1.635;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1561,161,0 chrIII 299902 . A T 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=72;Dels=0.00;FS=13.953;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.643;QD=16.53;ReadPosRankSum=2.901;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1223,141,0 chrIII 300031 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.46;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1514,174,0 chrIII 300047 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8712;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.77;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1579,177,0 chrIII 300103 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.63;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:79:99:1426,171,0 chrIII 300132 . C A 1431 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.04;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1464,174,0 chrIII 300151 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.13;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1228,147,0 chrIII 300168 . G T 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.928;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-0.412;QD=15.36;ReadPosRankSum=1.608;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1339,150,0 chrIII 300273 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.67;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1606,189,0 chrIII 300327 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.10;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2058,234,0 chrIII 300677 . C A 2315 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.81;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2348,276,0 chrIII 300695 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.02;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2219,255,0 chrIII 300759 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.89;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1525,171,0 chrIII 300866 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.35;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1439,171,0 chrIII 300877 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=17.64;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1656,195,0 chrIII 301002 . C A 2601 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4536;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.86;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2634,294,0 chrIII 301079 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.5521;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.22;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2304,258,0 chrIII 301166 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.39;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1808,207,0 chrIII 301183 . C T 1551 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.41;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1584,177,0 chrIII 301423 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.23;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1648,183,0 chrIII 301448 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=14.66;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1279,147,0 chrIII 301452 . A G 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=2.619;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=0.847;QD=16.19;ReadPosRankSum=2.357;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1344,156,0 chrIII 301644 . C G 1313 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.52;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1346,159,0 chrIII 301654 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5255;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.92;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1393,156,0 chrIII 301727 . A G 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=6.264;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-0.652;QD=17.35;ReadPosRankSum=2.360;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:987,114,0 chrIII 301738 . A C 966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=6.240;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-0.911;QD=15.84;ReadPosRankSum=1.478;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:999,120,0 chrIII 301748 . T C 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=0.058;QD=16.65;ReadPosRankSum=1.675;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1032,123,0 chrIII 301769 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.48;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1055,123,0 chrIII 301810 . C A 1318 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.90;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1351,150,0 chrIII 301864 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.39;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1755,201,0 chrIII 301887 . A C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=114;Dels=0.00;FS=3.249;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.371;QD=18.50;ReadPosRankSum=1.701;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2142,249,0 chrIII 301917 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.699;QD=19.05;ReadPosRankSum=1.699;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2071,229,0 chrIII 302004 . G C 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.60;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1475,174,0 chrIII 302096 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.86;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1618,186,0 chrIII 302230 . G T 1606 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=18.25;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1639,177,0 chrIII 302273 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=17.03;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1736,192,0 chrIII 302465 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.073;QD=17.46;ReadPosRankSum=1.683;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1290,150,0 chrIII 302475 . T G 1048 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=15.64;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1081,126,0 chrIII 302547 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.058;QD=18.68;ReadPosRankSum=1.617;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1154,132,0 chrIII 302586 . C T 1250 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=11.7661;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.61;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1283,144,0 chrIII 302608 . C G 1156 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=16.75;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1189,138,0 chrIII 302630 . C G 1108 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.05;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1141,132,0 chrIII 302675 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.33;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1188,138,0 chrIII 302768 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.97;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:767,90,0 chrIII 302927 . G A 785 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=16.35;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:818,96,0 chrIII 302979 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.67;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1172,132,0 chrIII 302988 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=17.00;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1274,144,0 chrIII 303080 . C A 1147 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.49;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1180,138,0 chrIII 303175 . G A 669 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=4;QD=19.11;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:702,78,0 chrIII 303216 . T C 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=1;MQRankSum=-1.459;QD=21.08;ReadPosRankSum=1.641;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:855,102,0 chrIII 303302 . C T 780 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.00;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:813,93,0 chrIII 303472 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=1;QD=21.83;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:797,90,0 chrIII 303499 . C T 498 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=1;QD=17.17;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:531,63,0 chrIII 303524 . T C 393 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=1;QD=16.37;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:426,51,0 chrIII 303533 . A T 443 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=18.46;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:476,54,0 chrIII 303540 . A C 418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=29;Dels=0.00;FS=6.690;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;MQRankSum=0.495;QD=14.41;ReadPosRankSum=-0.619;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,27:29:54:451,54,0 chrIII 303560 . A G 434 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=16.07;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:467,57,0 chrIII 303632 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=18.04;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:863,99,0 chrIII 303728 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=17.48;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1082,126,0 chrIII 303749 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=15.88;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1240,150,0 chrIII 303754 . A G 793.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=41.252;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=0;MQRankSum=2.513;QD=11.17;ReadPosRankSum=1.279;SB=-3.601e+02 GT:AD:DP:GQ:PL 0/1:21,50:71:18:823,0,18 chrIII 303762 . C G 757.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;DP=73;Dels=0.00;FS=58.467;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=0;MQRankSum=3.501;QD=10.37;ReadPosRankSum=-1.213;SB=-3.550e+02 GT:AD:DP:GQ:PL 0/1:20,52:73:21:787,0,21 chrIII 303779 . C A,G 751.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.15;MQ0=0;QD=10.43;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/2:0,49,23:72:72:811,158,72,652,0,629 chrIII 303780 . C A 870 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=12.25;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:903,108,0 chrIII 303795 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=10.28;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:835,102,0 chrIII 303821 . C T 352.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DP=76;Dels=0.00;FS=34.223;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=0;MQRankSum=2.835;QD=4.63;ReadPosRankSum=1.460;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:22,54:76:63:382,0,63 chrIII 303851 . G A 373 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=6.22;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:48:406,48,0 chrIII 303853 . C T 242.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DP=60;Dels=0.00;FS=22.206;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=0.673;QD=4.03;ReadPosRankSum=-0.033;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:17,43:60:25:272,0,25 chrIII 303862 . A G 255 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=5.00;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:36:288,36,0 chrIII 303884 . C T 208 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=6.12;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:30:241,30,0 chrIII 303922 . G A 55.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=0;QD=4.27;SB=-9.745e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:88,12,0 chrIII 303979 . G A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.980;DP=23;Dels=0.00;FS=4.586;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=0.528;QD=1.78;ReadPosRankSum=-0.528;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:9:73,9,0 chrIII 303984 . A T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=25;Dels=0.00;FS=3.979;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-1.317;QD=1.64;ReadPosRankSum=-0.624;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:9:73,9,0 chrIII 303985 . A C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=25;Dels=0.00;FS=3.979;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=1.317;QD=1.80;ReadPosRankSum=-0.624;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:9:77,9,0 chrIII 304001 . G T 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=35;Dels=0.00;FS=3.554;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=-0.306;QD=1.34;ReadPosRankSum=-1.733;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:9:79,9,0 chrIII 304010 . G C 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.268;DP=41;Dels=0.00;FS=38.577;HaplotypeScore=2.6384;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=1.087;QD=1.07;ReadPosRankSum=-1.244;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:9,32:41:9:76,9,0 chrIII 304019 . T C 45.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.2075;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=0.98;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:9:78,9,0 chrIII 304068 . T A 266 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=36.5647;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=4.51;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:33:299,33,0 chrIII 304102 . A G 397 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=0;QD=4.62;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:57:430,57,0 chrIII 304108 . A G 410 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;QD=4.71;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:60:443,60,0 chrIII 304116 . A G 444 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=4.99;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:63:477,63,0 chrIII 304117 . T G 468 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=5.26;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:66:501,66,0 chrIII 304299 . C T 919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.911;DP=104;Dels=0.00;FS=23.236;HaplotypeScore=11.7723;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;MQRankSum=1.584;QD=8.84;ReadPosRankSum=4.041;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:34,66:104:99:952,114,0 chrIII 304326 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.1541;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=7.58;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,158:158:99:1231,144,0 chrIII 304328 . G A 924.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;DP=170;Dels=0.00;FS=49.625;HaplotypeScore=7.5636;MLEAC=1;MLEAF=0.500;MQ=35.94;MQ0=0;MQRankSum=1.324;QD=5.44;ReadPosRankSum=0.479;SB=-6.440e+02 GT:AD:DP:GQ:PL 0/1:59,110:170:48:954,0,48 chrIII 304425 . C T 4874.01 PASS AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=12.2633;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=19.50;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,250:250:99:4874,552,0 chrIII 304520 . G T 4553.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=20.98;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,217:217:99:4553,522,0 chrIII 304747 . A T 737.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;DP=305;Dels=0.00;FS=13.067;HaplotypeScore=21.2879;MLEAC=1;MLEAF=0.500;MQ=44.79;MQ0=5;MQRankSum=-6.184;QD=2.42;ReadPosRankSum=-3.870;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:215,90:305:99:767,0,2792 chrIII 304760 . C A 4531.01 filter AC=2;AF=1.00;AN=2;DP=311;Dels=0.00;FS=0.000;HaplotypeScore=27.5713;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=4;QD=14.57;SB=-1.778e+03 GT:AD:DP:GQ:PL 1/1:0,310:311:99:4531,516,0 chrIII 304825 . G C 5732.01 filter AC=2;AF=1.00;AN=2;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=22.6960;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=14;QD=18.14;SB=-2.866e+03 GT:AD:DP:GQ:PL 1/1:0,312:316:99:5732,666,0 chrIII 304891 . A G 678.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.696;DP=198;Dels=0.00;FS=2.754;HaplotypeScore=12.0931;MLEAC=1;MLEAF=0.500;MQ=42.05;MQ0=14;MQRankSum=0.499;QD=3.42;ReadPosRankSum=-0.335;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:131,67:198:99:708,0,1713 chrIII 304990 . C T 532.05 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.072;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.5408;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=3;MQRankSum=1.187;QD=4.59;ReadPosRankSum=1.213;SB=-7.008e+01 GT:AD:DP:GQ:PL 1/1:34,82:116:22:565,22,0 chrIII 305002 . T C 457 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=3;QD=4.01;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,113:114:57:490,57,0 chrIII 305021 . C T 335.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DP=113;Dels=0.00;FS=11.070;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=7;MQRankSum=1.364;QD=2.96;ReadPosRankSum=-0.060;SB=-2.958e+00 GT:AD:DP:GQ:PL 0/1:32,81:113:19:365,0,19 chrIII 305033 . A G 578 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=19.14;MQ0=10;MQRankSum=-1.732;QD=5.03;ReadPosRankSum=1.699;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,113:115:72:611,72,0 chrIII 305048 . C T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290;DP=132;Dels=0.00;FS=4.920;HaplotypeScore=8.4085;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=12;MQRankSum=1.716;QD=1.21;ReadPosRankSum=-0.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,40:132:99:190,0,419 chrIII 305066 . C A 1026 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=125;Dels=0.00;FS=6.496;HaplotypeScore=5.2490;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=11;MQRankSum=-0.757;QD=8.21;ReadPosRankSum=1.658;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:4,120:125:99:1059,123,0 chrIII 305105 . T C 1753 filter AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.46;MQ0=22;QD=11.53;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1786,207,0 chrIII 305110 . C T 392.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;DP=157;Dels=0.00;FS=14.664;HaplotypeScore=2.6386;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=20;MQRankSum=-1.654;QD=2.50;ReadPosRankSum=0.826;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,52:157:99:422,0,1212 chrIII 305117 . T C 470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;DP=167;Dels=0.00;FS=12.949;HaplotypeScore=3.4272;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=22;MQRankSum=-3.129;QD=2.81;ReadPosRankSum=-1.511;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,59:167:99:500,0,1278 chrIII 305237 . A G 613 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=24;MQRankSum=-0.451;QD=7.05;ReadPosRankSum=2.372;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:75:646,75,0 chrIII 305240 . A T 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;DP=85;Dels=0.00;FS=38.839;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=24;MQRankSum=-1.493;QD=2.32;ReadPosRankSum=3.845;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:44,41:85:99:227,0,242 chrIII 305288 . G A 321 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.4750;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=11;QD=10.03;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:42:354,42,0 chrIII 305294 . G A 303 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=11;QD=10.45;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:39:336,39,0 chrIII 305321 . C T 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;DP=32;Dels=0.00;FS=3.074;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=31.26;MQ0=8;MQRankSum=2.957;QD=5.28;ReadPosRankSum=1.610;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,11:32:99:199,0,261 chrIII 305326 . C T 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.39;MQ0=8;MQRankSum=-2.759;QD=5.11;ReadPosRankSum=-3.439;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:12,16:28:99:173,0,199 chrIII 305354 . C G 268 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=6;QD=14.11;SB=-5.100e+01 GT:AD:DP:GQ:PL 1/1:0,18:19:36:301,36,0 chrIII 305490 . C A 520 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=18;QD=10.83;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:553,63,0 chrIII 305522 . A G 140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DP=54;Dels=0.00;FS=8.776;HaplotypeScore=5.0992;MLEAC=1;MLEAF=0.500;MQ=19.25;MQ0=27;MQRankSum=0.151;QD=2.59;ReadPosRankSum=0.272;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:22,31:54:84:170,0,84 chrIII 305548 . A G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.550;DP=67;Dels=0.00;FS=16.338;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=27;MQRankSum=-1.451;QD=1.99;ReadPosRankSum=-1.648;SB=-1.008e+02 GT:AD:DP:GQ:PL 0/1:32,35:67:99:163,0,242 chrIII 305563 . G A 800 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=26;QD=11.43;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:833,93,0 chrIII 305635 . T C 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;DP=134;Dels=0.00;FS=10.343;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=21;MQRankSum=-0.326;QD=0.17;ReadPosRankSum=0.748;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:94,39:134:53:53,0,1471 chrIII 305658 . A G 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610;DP=128;Dels=0.00;FS=29.819;HaplotypeScore=12.8423;MLEAC=1;MLEAF=0.500;MQ=28.74;MQ0=13;MQRankSum=-0.796;QD=6.87;ReadPosRankSum=2.094;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:70,58:128:99:909,0,578 chrIII 305660 . A C 576.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;DP=130;Dels=0.00;FS=16.645;HaplotypeScore=13.6745;MLEAC=1;MLEAF=0.500;MQ=29.15;MQ0=13;MQRankSum=-1.092;QD=4.43;ReadPosRankSum=2.576;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:85,45:130:99:606,0,724 chrIII 305662 . T C 1773 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.2518;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=13;MQRankSum=-2.059;QD=13.04;ReadPosRankSum=2.892;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:4,130:136:99:1806,213,0 chrIII 305679 . T A 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.197;DP=128;Dels=0.00;FS=4.146;HaplotypeScore=14.2464;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=17;MQRankSum=-2.048;QD=1.52;ReadPosRankSum=2.526;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:92,36:128:99:225,0,1410 chrIII 305684 . C T 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.624;DP=126;Dels=0.00;FS=7.754;HaplotypeScore=21.7772;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=17;MQRankSum=-1.707;QD=2.92;ReadPosRankSum=2.152;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:80,46:126:99:398,0,1172 chrIII 305694 . T A 607.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DP=122;Dels=0.00;FS=9.938;HaplotypeScore=17.5828;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=17;MQRankSum=1.934;QD=4.98;ReadPosRankSum=-2.249;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:65,57:122:99:637,0,689 chrIII 305705 . G A 886.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;DP=120;Dels=0.00;FS=4.317;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=37.06;MQ0=13;MQRankSum=2.105;QD=7.38;ReadPosRankSum=0.576;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:43,76:120:99:916,0,435 chrIII 305737 . C T 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.578;DP=107;Dels=0.00;FS=1.387;HaplotypeScore=4.1560;MLEAC=1;MLEAF=0.500;MQ=39.67;MQ0=12;MQRankSum=-2.514;QD=5.64;ReadPosRankSum=-1.203;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:55,52:107:99:633,0,623 chrIII 305763 . A G 1227 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=6;QD=13.94;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1260,147,0 chrIII 305770 . G A 326.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;DP=83;Dels=0.00;FS=10.275;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=34.46;MQ0=6;MQRankSum=-0.342;QD=3.93;ReadPosRankSum=0.209;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:41,42:83:99:356,0,580 chrIII 305778 . C G 283.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=80;Dels=0.00;FS=12.111;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.35;MQ0=4;MQRankSum=-0.770;QD=3.54;ReadPosRankSum=-0.260;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:38,42:80:99:313,0,519 chrIII 305797 . A C 773 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.495;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=5;MQRankSum=-1.176;QD=12.67;ReadPosRankSum=-0.742;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:72:806,72,0 chrIII 305821 . A C 324.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.185;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=18;MQRankSum=-1.459;QD=5.79;ReadPosRankSum=0.821;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:23:357,23,0 chrIII 305871 . T C 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.885;DP=79;Dels=0.00;FS=3.854;HaplotypeScore=5.6790;MLEAC=1;MLEAF=0.500;MQ=20.60;MQ0=20;MQRankSum=0.446;QD=2.70;ReadPosRankSum=-1.209;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:59,20:79:99:243,0,360 chrIII 306125 . A T 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;DP=51;Dels=0.00;FS=4.278;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=33.61;MQ0=2;MQRankSum=-0.281;QD=2.14;ReadPosRankSum=1.474;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:30,21:51:99:139,0,163 chrIII 306130 . A G 83.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;DP=41;Dels=0.00;FS=1.261;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=2;MQRankSum=0.718;QD=2.02;ReadPosRankSum=0.803;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:22,19:41:99:113,0,229 chrIII 306132 . G A 402 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=3;QD=10.86;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:48:435,48,0 chrIII 306149 . T G 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;DP=43;Dels=0.00;FS=7.305;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=3;MQRankSum=-0.748;QD=0.98;ReadPosRankSum=1.590;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:21,22:43:72:72,0,243 chrIII 306150 . G A 54.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;DP=43;Dels=0.00;FS=10.301;HaplotypeScore=1.8997;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=3;MQRankSum=0.269;QD=1.26;ReadPosRankSum=1.317;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:20,22:43:84:84,0,217 chrIII 306171 . G T 292.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;DP=56;Dels=0.00;FS=3.954;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=5;MQRankSum=0.804;QD=5.21;ReadPosRankSum=-0.278;SB=-2.259e+02 GT:AD:DP:GQ:PL 0/1:8,48:56:25:322,0,25 chrIII 306173 . T C 309.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;DP=57;Dels=0.00;FS=1.753;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=5;MQRankSum=0.272;QD=5.42;ReadPosRankSum=-0.501;SB=-2.766e+02 GT:AD:DP:GQ:PL 0/1:8,49:57:26:339,0,26 chrIII 306178 . G A 291.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;DP=62;Dels=0.00;FS=1.743;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=7;MQRankSum=-0.067;QD=4.69;ReadPosRankSum=-1.066;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:10,52:62:19:321,0,19 chrIII 306181 . C G 293.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DP=64;Dels=0.00;FS=3.751;HaplotypeScore=3.8028;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=9;MQRankSum=0.417;QD=4.58;ReadPosRankSum=-0.442;SB=-2.429e+02 GT:AD:DP:GQ:PL 0/1:12,52:64:43:323,0,43 chrIII 306202 . T A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;DP=73;Dels=0.00;FS=7.350;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.79;MQ0=18;MQRankSum=0.093;QD=1.53;ReadPosRankSum=-0.280;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:39,34:73:99:142,0,266 chrIII 306239 . C T 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;DP=73;Dels=0.00;FS=1.190;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=20;MQRankSum=0.524;QD=3.03;ReadPosRankSum=0.810;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:34,39:73:99:251,0,105 chrIII 306260 . C T 497 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.39;MQ0=20;QD=6.90;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:60:530,60,0 chrIII 306278 . G A 633 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=12;QD=8.44;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:75:666,75,0 chrIII 306292 . G A 533.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;DP=89;Dels=0.00;FS=12.659;HaplotypeScore=15.5568;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=9;MQRankSum=-0.746;QD=5.99;ReadPosRankSum=2.253;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:13,76:89:27:566,27,0 chrIII 306309 . G T 679 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=7;QD=7.30;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:84:712,84,0 chrIII 306337 . G C 430.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DP=97;Dels=0.00;FS=19.381;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=2;MQRankSum=-0.846;QD=4.43;ReadPosRankSum=-0.218;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:12,85:97:32:460,0,32 chrIII 306351 . G A 656 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=1;QD=6.98;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:78:689,78,0 chrIII 306356 . T C 272.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.533;DP=90;Dels=0.00;FS=11.997;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=1;MQRankSum=-1.059;QD=3.02;ReadPosRankSum=2.114;SB=-4.920e+02 GT:AD:DP:GQ:PL 0/1:17,73:90:99:302,0,101 chrIII 306357 . T G 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;DP=90;Dels=0.00;FS=9.853;HaplotypeScore=2.4530;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=1;MQRankSum=2.198;QD=0.70;ReadPosRankSum=-2.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,17:90:93:93,0,292 chrIII 306364 . G T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;DP=91;Dels=0.00;FS=14.191;HaplotypeScore=76.6368;MLEAC=1;MLEAF=0.500;MQ=27.56;MQ0=1;MQRankSum=1.048;QD=0.38;ReadPosRankSum=-1.770;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,19:91:65:65,0,330 chrIII 306392 . G T 539 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=23.8707;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=2;QD=6.74;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:63:572,63,0 chrIII 306398 . T C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.813;DP=86;Dels=0.00;FS=9.629;HaplotypeScore=51.2264;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=1;MQRankSum=0.148;QD=0.86;ReadPosRankSum=2.164;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,18:86:99:104,0,351 chrIII 306405 . C G 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=89;Dels=0.00;FS=3.207;HaplotypeScore=81.0190;MLEAC=1;MLEAF=0.500;MQ=30.85;MQ0=1;MQRankSum=-0.274;QD=0.57;ReadPosRankSum=1.015;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:62,26:89:81:81,0,379 chrIII 306412 . C T 672 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.9965;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=3;QD=7.38;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:91:78:705,78,0 chrIII 306414 . A G 99.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;DP=92;Dels=0.00;FS=7.809;HaplotypeScore=11.9965;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=3;MQRankSum=-0.950;QD=1.08;ReadPosRankSum=-0.040;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:65,27:92:99:129,0,390 chrIII 306425 . A T 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;DP=87;Dels=0.00;FS=19.828;HaplotypeScore=2.2829;MLEAC=1;MLEAF=0.500;MQ=32.09;MQ0=3;MQRankSum=-0.575;QD=1.61;ReadPosRankSum=-0.575;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:65,22:87:99:170,0,569 chrIII 306431 . G C 100.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;DP=87;Dels=0.00;FS=18.847;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=32.58;MQ0=3;MQRankSum=-1.194;QD=1.15;ReadPosRankSum=-1.751;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:62,25:87:99:130,0,589 chrIII 306483 . T C 548.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=1;MLEAF=0.500;MQ=35.40;MQ0=4;MQRankSum=-0.999;QD=6.52;ReadPosRankSum=0.940;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:37,47:84:99:578,0,455 chrIII 306486 . A G 428.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8037;MLEAC=1;MLEAF=0.500;MQ=35.35;MQ0=4;MQRankSum=2.809;QD=5.10;ReadPosRankSum=0.024;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:48,36:84:99:458,0,574 chrIII 306507 . C G 324.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.252;DP=71;Dels=0.00;FS=0.950;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=34.46;MQ0=3;MQRankSum=-3.182;QD=4.56;ReadPosRankSum=-2.035;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:40,29:71:99:354,0,563 chrIII 306536 . G A 439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.099;DP=57;Dels=0.00;FS=27.661;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=3;MQRankSum=2.342;QD=7.70;ReadPosRankSum=0.887;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:22,35:57:99:469,0,285 chrIII 306538 . A T 258.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DP=57;Dels=0.00;FS=27.661;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=3;MQRankSum=-2.502;QD=4.53;ReadPosRankSum=-0.479;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,22:57:99:288,0,462 chrIII 306575 . C T 673 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=14;QD=11.81;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:706,84,0 chrIII 306597 . C G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=20;MQRankSum=0.088;QD=0.56;ReadPosRankSum=-1.796;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:83,19:102:87:87,0,614 chrIII 306631 . C T 734.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.244;DP=135;Dels=0.00;FS=20.513;HaplotypeScore=64.1653;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=18;MQRankSum=-0.158;QD=5.44;ReadPosRankSum=0.303;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:61,73:135:99:764,0,600 chrIII 306685 . T C 282.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.629;DP=126;Dels=0.00;FS=1.518;HaplotypeScore=16.7603;MLEAC=1;MLEAF=0.500;MQ=30.09;MQ0=1;MQRankSum=-0.646;QD=2.24;ReadPosRankSum=-2.374;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:84,41:126:99:312,0,1273 chrIII 306693 . C T 90.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;DP=106;Dels=0.00;FS=5.992;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=29.49;MQ0=0;MQRankSum=-1.228;QD=0.85;ReadPosRankSum=-1.146;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:81,25:106:99:120,0,1248 chrIII 306711 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DP=87;Dels=0.00;FS=5.716;HaplotypeScore=5.5039;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=0;MQRankSum=-0.904;QD=0.14;ReadPosRankSum=-4.081;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:71,16:87:42:42,0,1134 chrIII 306731 . A G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.7064;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;MQRankSum=0.933;QD=13.91;ReadPosRankSum=1.688;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1132,132,0 chrIII 306736 . T G 1096 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=14.81;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1129,132,0 chrIII 306792 . G A 266.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DP=49;Dels=0.00;FS=4.361;HaplotypeScore=17.5156;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=0;MQRankSum=-0.341;QD=5.43;ReadPosRankSum=1.128;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:26,22:49:99:296,0,206 chrIII 306817 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=14.48;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:815,93,0 chrIII 306856 . G C 1026 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=16.82;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1059,123,0 chrIII 306869 . C A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;DP=71;Dels=0.00;FS=4.645;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=34.91;MQ0=1;MQRankSum=-0.161;QD=0.66;ReadPosRankSum=-0.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,13:71:77:77,0,798 chrIII 306902 . A G 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.498;DP=75;Dels=0.00;FS=4.890;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=1;MQRankSum=1.639;QD=14.15;ReadPosRankSum=-0.094;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1094,129,0 chrIII 306920 . A G 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=1;MQRankSum=-0.805;QD=12.64;ReadPosRankSum=1.683;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:943,111,0 chrIII 306928 . C G 781.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=77;Dels=0.00;FS=6.601;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=1;MQRankSum=1.678;QD=10.14;ReadPosRankSum=-1.245;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:77:96:814,96,0 chrIII 306958 . G A 99.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DP=97;Dels=0.00;FS=27.663;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=0.670;QD=1.02;ReadPosRankSum=0.705;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:76,21:97:99:129,0,749 chrIII 306967 . T A 1030 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=0;QD=11.44;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1063,126,0 chrIII 306974 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;QD=11.50;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1022,120,0 chrIII 306978 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=11.67;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1025,120,0 chrIII 306992 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=11.60;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1007,117,0 chrIII 307001 . A G 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.749;DP=86;Dels=0.00;FS=22.238;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=1;MQRankSum=-0.839;QD=1.66;ReadPosRankSum=0.524;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:57,29:86:99:173,0,551 chrIII 307016 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=2;QD=8.83;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:84:704,84,0 chrIII 307039 . A T 113.13 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=2;QD=3.77;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:146,18,0 chrIII 307057 . T C 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;DP=32;Dels=0.00;FS=5.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.09;MQ0=2;MQRankSum=-2.349;QD=1.00;ReadPosRankSum=-0.885;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:5,27:32:58:62,0,58 chrIII 307138 . C T 125.13 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=6.1347;MLEAC=2;MLEAF=1.00;MQ=18.13;MQ0=5;QD=3.91;SB=-1.331e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:18:158,18,0 chrIII 307223 . A G 535.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.795;DP=135;Dels=0.00;FS=10.425;HaplotypeScore=10.8123;MLEAC=1;MLEAF=0.500;MQ=18.95;MQ0=33;MQRankSum=-0.932;QD=3.96;ReadPosRankSum=-0.639;SB=-2.975e+02 GT:AD:DP:GQ:PL 0/1:35,100:135:99:565,0,178 chrIII 307261 . C G 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=13.4275;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=21;MQRankSum=-0.094;QD=0.41;ReadPosRankSum=-0.295;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:132,25:157:95:95,0,1445 chrIII 307275 . C A 316.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.098;DP=180;Dels=0.00;FS=4.765;HaplotypeScore=12.1386;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=18;MQRankSum=0.232;QD=1.76;ReadPosRankSum=-1.564;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:130,47:180:99:346,0,1426 chrIII 307300 . T C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.654;DP=184;Dels=0.00;FS=1.035;HaplotypeScore=7.4101;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=14;MQRankSum=-0.254;QD=0.11;ReadPosRankSum=1.386;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:162,22:184:51:51,0,2050 chrIII 307310 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=18.3686;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=10;MQRankSum=0.187;QD=0.12;ReadPosRankSum=1.583;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:176,22:200:53:53,0,1974 chrIII 307317 . T C 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.867;DP=201;Dels=0.00;FS=1.083;HaplotypeScore=72.2869;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=11;MQRankSum=0.376;QD=0.37;ReadPosRankSum=-0.571;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:176,24:201:99:105,0,2028 chrIII 307321 . T C 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;DP=193;Dels=0.00;FS=11.242;HaplotypeScore=40.8239;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=11;MQRankSum=1.357;QD=1.22;ReadPosRankSum=-2.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,37:193:99:266,0,1875 chrIII 307351 . T A 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0142;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=12;MQRankSum=1.771;QD=0.45;ReadPosRankSum=-0.539;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:105,13:118:83:83,0,874 chrIII 307368 . A G 375.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=85;Dels=0.00;FS=2.050;HaplotypeScore=10.1566;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=6;MQRankSum=-0.523;QD=4.41;ReadPosRankSum=-1.467;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:14,71:85:87:405,0,87 chrIII 307372 . T C 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.203;DP=77;Dels=0.00;FS=1.336;HaplotypeScore=10.1566;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=5;MQRankSum=-1.553;QD=1.13;ReadPosRankSum=0.756;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:50,27:77:99:117,0,260 chrIII 307376 . A T 399 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.6059;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=3;QD=5.87;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:51:432,51,0 chrIII 307432 . A G 387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.008;DP=30;Dels=0.00;FS=11.088;HaplotypeScore=23.1682;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;MQRankSum=2.415;QD=12.90;ReadPosRankSum=2.368;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:8,22:30:30:420,30,0 chrIII 307461 . C T 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DP=53;Dels=0.00;FS=12.588;HaplotypeScore=33.3769;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=8;MQRankSum=4.066;QD=5.25;ReadPosRankSum=2.359;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:35,18:53:99:308,0,154 chrIII 307481 . T A 435 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.313;DP=67;Dels=0.00;FS=8.156;HaplotypeScore=12.1892;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=15;MQRankSum=2.406;QD=6.49;ReadPosRankSum=0.112;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:28,39:67:36:468,36,0 chrIII 307518 . G A 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.629;DP=103;Dels=0.00;FS=41.398;HaplotypeScore=18.6921;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=21;MQRankSum=-0.783;QD=1.07;ReadPosRankSum=1.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,27:103:99:140,0,220 chrIII 307531 . A G 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=115;Dels=0.00;FS=84.433;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=21;MQRankSum=2.051;QD=1.34;ReadPosRankSum=3.482;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:59,56:115:99:184,0,195 chrIII 307547 . A G 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;DP=120;Dels=0.00;FS=37.905;HaplotypeScore=22.4311;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=18;MQRankSum=-0.124;QD=1.30;ReadPosRankSum=-0.116;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:35,85:120:99:186,0,253 chrIII 307548 . C T 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DP=120;Dels=0.00;FS=37.905;HaplotypeScore=22.4311;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=18;MQRankSum=-0.469;QD=1.36;ReadPosRankSum=0.056;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:35,85:120:99:193,0,255 chrIII 307560 . G T 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.113;DP=137;Dels=0.00;FS=40.203;HaplotypeScore=25.0858;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=22;MQRankSum=1.033;QD=1.82;ReadPosRankSum=0.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,36:137:99:279,0,221 chrIII 307581 . G A 183.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;DP=144;Dels=0.00;FS=73.895;HaplotypeScore=115.9525;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=16;MQRankSum=-2.420;QD=1.27;ReadPosRankSum=0.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,60:144:99:213,0,502 chrIII 307582 . A G 389.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=145;Dels=0.00;FS=32.685;HaplotypeScore=115.9525;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=16;MQRankSum=-1.549;QD=2.68;ReadPosRankSum=1.238;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:33,112:145:99:419,0,309 chrIII 307583 . G A 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.297;DP=145;Dels=0.00;FS=143.283;HaplotypeScore=115.9525;MLEAC=1;MLEAF=0.500;MQ=19.19;MQ0=16;MQRankSum=0.275;QD=0.51;ReadPosRankSum=0.879;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:95,50:145:99:104,0,647 chrIII 307587 . C T 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.336;DP=156;Dels=0.00;FS=29.435;HaplotypeScore=114.7930;MLEAC=1;MLEAF=0.500;MQ=19.83;MQ0=16;MQRankSum=1.545;QD=1.57;ReadPosRankSum=1.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,29:156:99:275,0,519 chrIII 307594 . G T 177.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=159;Dels=0.00;FS=26.680;HaplotypeScore=107.3382;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=14;MQRankSum=1.314;QD=1.11;ReadPosRankSum=1.789;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,26:159:99:207,0,674 chrIII 307595 . A T 1129 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=107.3382;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=14;MQRankSum=-0.233;QD=7.24;ReadPosRankSum=1.708;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:2,153:156:99:1162,135,0 chrIII 307608 . G C 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.461;DP=146;Dels=0.00;FS=140.245;HaplotypeScore=19.4197;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=13;MQRankSum=-0.629;QD=0.53;ReadPosRankSum=-1.593;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:93,53:146:99:107,0,703 chrIII 307616 . G T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.473;DP=154;Dels=0.00;FS=29.412;HaplotypeScore=24.2029;MLEAC=1;MLEAF=0.500;MQ=22.80;MQ0=14;MQRankSum=2.070;QD=0.44;ReadPosRankSum=-0.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,32:154:98:98,0,685 chrIII 307630 . G A 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.049;DP=153;Dels=0.00;FS=85.487;HaplotypeScore=14.0770;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=14;MQRankSum=-2.239;QD=1.76;ReadPosRankSum=-6.616;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:78,75:153:99:299,0,620 chrIII 307685 . A T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=108.8902;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=5;MQRankSum=-0.173;QD=0.94;ReadPosRankSum=-0.005;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,30:100:99:124,0,325 chrIII 307690 . G A 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;DP=100;Dels=0.00;FS=33.174;HaplotypeScore=93.7586;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=5;MQRankSum=-0.622;QD=1.35;ReadPosRankSum=-1.293;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:49,51:100:99:165,0,300 chrIII 307696 . C T 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.884;DP=106;Dels=0.00;FS=43.836;HaplotypeScore=65.0809;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=5;MQRankSum=-0.181;QD=1.00;ReadPosRankSum=-2.362;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:45,59:106:99:136,0,232 chrIII 307697 . G A 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.612;DP=106;Dels=0.00;FS=38.534;HaplotypeScore=46.5137;MLEAC=1;MLEAF=0.500;MQ=21.99;MQ0=5;MQRankSum=1.408;QD=0.78;ReadPosRankSum=2.293;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,32:106:99:113,0,269 chrIII 307713 . G A 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;DP=99;Dels=0.00;FS=42.559;HaplotypeScore=47.8444;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=5;MQRankSum=-0.550;QD=0.71;ReadPosRankSum=-0.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,31:99:99:100,0,261 chrIII 307716 . T C 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730;DP=97;Dels=0.00;FS=43.620;HaplotypeScore=47.8444;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=4;MQRankSum=0.150;QD=0.75;ReadPosRankSum=0.481;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,32:97:99:103,0,264 chrIII 307721 . T C 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.223;DP=75;Dels=0.00;FS=14.382;HaplotypeScore=59.1951;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=3;MQRankSum=2.942;QD=2.41;ReadPosRankSum=1.667;SB=-7.607e-03 GT:AD:DP:GQ:PL 0/1:43,32:75:33:211,0,33 chrIII 307768 . A C 223 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;DP=91;Dels=0.00;FS=12.884;HaplotypeScore=17.7369;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=4;MQRankSum=-1.756;QD=2.45;ReadPosRankSum=2.733;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:30:256,30,0 chrIII 307772 . C T 196.01 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=8;QD=1.98;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:27:229,27,0 chrIII 307852 . A G 1990 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.241;DP=110;Dels=0.00;FS=22.983;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=4;MQRankSum=1.985;QD=18.09;ReadPosRankSum=1.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2023,246,0 chrIII 308124 . C T 685 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=10;QD=8.78;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:87:718,87,0 chrIII 308154 . C T 1880 filter AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=5;QD=14.35;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1913,222,0 chrIII 308371 . T G 1876 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.16;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1909,222,0 chrIII 308403 . T A 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.264;QD=20.73;ReadPosRankSum=1.615;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1318,147,0 chrIII 308509 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.19;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1834,219,0 chrIII 308763 . C G 1610 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.38;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1643,192,0 chrIII 308868 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.66;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1399,168,0 chrIII 308960 . A C 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.278;QD=18.74;ReadPosRankSum=1.689;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1551,180,0 chrIII 308997 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=17.12;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1488,171,0 chrIII 309021 . T C 1277 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=54.8023;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=15.39;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1310,150,0 chrIII 309022 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=5.093;HaplotypeScore=56.5826;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=-1.443;QD=14.74;ReadPosRankSum=1.691;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1271,147,0 chrIII 309303 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.36;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1509,174,0 chrIII 309720 . G T 1702 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.12;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1735,198,0 chrIII 310146 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.03;FS=0.000;HaplotypeScore=9.9131;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.43;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1987,219,0 chrIII 310191 . T A 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=9.3067;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.357;QD=20.32;ReadPosRankSum=1.703;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2492,282,0 chrIII 310242 . G T 2429 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=15.7967;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2462,282,0 chrIII 310319 . G C 2051 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.05;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:2084,240,0 chrIII 310403 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.43;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1782,204,0 chrIII 310709 . T A 1741 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=16.42;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1774,198,0 chrIII 310714 . G A 1542 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=14.69;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1575,177,0 chrIII 310717 . T A 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.67;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1522,171,0 chrIII 310719 . G A 1460 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.37;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1493,168,0 chrIII 310722 . C T 1446 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=15.22;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1479,171,0 chrIII 310736 . G A 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=17.91;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1376,153,0 chrIII 310738 . G A 1343 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=17.91;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1376,153,0 chrIII 310739 . T C 1301 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=17.35;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1334,153,0 chrIII 310744 . A G 1180 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=15.13;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1213,138,0 chrIII 310761 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=40.4719;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.83;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:835,96,0 chrIII 310768 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.51;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:574,69,0 chrIII 310778 . C A 209.01 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=7.46;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:242,27,0 chrIII 310779 . A C 175.03 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=6.25;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:208,24,0 chrIII 310786 . C A 155.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.20;SB=-1.311e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:188,21,0 chrIII 310791 . G A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=3.30;SB=-2.452e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:105,12,0 chrIII 310793 . T A 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=5.42;SB=-2.814e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:163,18,0 chrIII 310801 . C A 312 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=8.21;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:39:345,39,0 chrIII 310804 . C T 438 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=10.19;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:54:471,54,0 chrIII 310811 . C T 535 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=10.92;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:66:568,66,0 chrIII 310884 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=17.88;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1821,213,0 chrIII 311237 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=22.09;MQ0=0;QD=10.24;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1344,159,0 chrIII 311290 . T C 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=2.937;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;MQRankSum=-2.406;QD=10.03;ReadPosRankSum=2.406;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1156,135,0 chrIII 311497 . G A 321 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=7.13;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:39:354,39,0 chrIII 311501 . T A 259 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=6.48;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:292,33,0 chrIII 311503 . T C 257 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=6.27;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:290,33,0 chrIII 311506 . A G 302 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.547;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=1.330;QD=7.02;ReadPosRankSum=1.652;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:39:335,39,0 chrIII 311513 . T C 328 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;MQRankSum=-0.423;QD=7.29;ReadPosRankSum=1.655;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:42:361,42,0 chrIII 311763 . T G 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.31;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1525,177,0 chrIII 311839 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=0.708;QD=19.32;ReadPosRankSum=1.683;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1405,162,0 chrIII 311848 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.67;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1252,150,0 chrIII 311959 . C T 1028 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.13;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1061,126,0 chrIII 311980 . T C 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.626;QD=17.23;ReadPosRankSum=1.684;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1291,150,0 chrIII 312103 . G T 1420 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1453,168,0 chrIII 312423 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.98;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1984,219,0 chrIII 312488 . C A 2538 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.26;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2571,294,0 chrIII 312512 . A G 2616 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.9082;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.55;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2649,303,0 chrIII 312554 . C G 1607 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.06;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1640,192,0 chrIII 312727 . G T 3225.28 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.54;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3258,357,0 chrIII 312895 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.18;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1567,183,0 chrIII 313024 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.39;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1894,222,0 chrIII 313165 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.79;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2133,243,0 chrIII 313192 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.54;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1647,192,0 chrIII 313321 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1596,186,0 chrIII 313508 . A G 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.495;DP=87;Dels=0.00;FS=14.015;HaplotypeScore=11.2208;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.518;QD=13.14;ReadPosRankSum=2.918;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1176,141,0 chrIII 313543 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=73;Dels=0.00;FS=2.606;HaplotypeScore=4.3696;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=0.620;QD=17.32;ReadPosRankSum=2.903;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:3,69:73:99:1297,153,0 chrIII 313806 . A G 2339 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.34;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2372,276,0 chrIII 313861 . C A 1247 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=12.72;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1280,150,0 chrIII 313876 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=13.68;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1196,135,0 chrIII 313899 . T C 801 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=11.12;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:96:834,96,0 chrIII 313904 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=11.22;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:93:807,93,0 chrIII 313914 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=10.95;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:876,102,0 chrIII 313989 . G A 798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DP=58;Dels=0.00;FS=13.164;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;MQRankSum=3.115;QD=13.76;ReadPosRankSum=3.299;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:4,54:58:93:831,93,0 chrIII 313995 . T A 814 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=15.96;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:847,96,0 chrIII 314002 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=0;QD=14.51;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:889,99,0 chrIII 314007 . C T 869 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=15.52;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:902,102,0 chrIII 314039 . T A 596 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=12.42;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:629,72,0 chrIII 314042 . A C 609 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=11.94;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:51:78:642,78,0 chrIII 314072 . G A 973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.149;DP=58;Dels=0.00;FS=3.082;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=2.280;QD=16.78;ReadPosRankSum=1.342;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1006,114,0 chrIII 314097 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=18.28;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1276,144,0 chrIII 314152 . C G 1590 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=18.71;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1623,195,0 chrIII 314219 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=0;QD=19.60;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1738,210,0 chrIII 314246 . T C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.477;DP=98;Dels=0.00;FS=1.748;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=2;MQRankSum=1.854;QD=16.54;ReadPosRankSum=3.398;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:7,91:98:99:1654,153,0 chrIII 314364 . T G 1286 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=4;MQRankSum=-1.138;QD=17.38;ReadPosRankSum=1.683;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1319,156,0 chrIII 314439 . G A 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=1;MQRankSum=0.728;QD=15.84;ReadPosRankSum=1.682;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1142,132,0 chrIII 314450 . G C 935 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=15.08;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:968,114,0 chrIII 314456 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=16.31;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1044,120,0 chrIII 314472 . T C 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=4.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=-1.572;QD=15.03;ReadPosRankSum=1.519;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1010,120,0 chrIII 314486 . C T 803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;MQRankSum=0.751;QD=13.38;ReadPosRankSum=1.559;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:96:836,96,0 chrIII 314498 . C T 886 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=13.84;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:919,105,0 chrIII 314546 . T C 948.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;DP=98;Dels=0.00;FS=48.015;HaplotypeScore=9.7536;MLEAC=1;MLEAF=0.500;MQ=35.25;MQ0=4;MQRankSum=-0.631;QD=9.67;ReadPosRankSum=2.296;SB=-3.720e+02 GT:AD:DP:GQ:PL 0/1:22,75:98:99:978,0,209 chrIII 314573 . C T 750.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.001;DP=113;Dels=0.00;FS=132.310;HaplotypeScore=4.1905;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=10;MQRankSum=-3.555;QD=6.64;ReadPosRankSum=-0.636;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:36,77:113:99:780,0,543 chrIII 314576 . C A 651.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;DP=106;Dels=0.00;FS=134.560;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=10;MQRankSum=-3.824;QD=6.14;ReadPosRankSum=-0.180;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:36,70:106:99:681,0,547 chrIII 314591 . C T 438.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;DP=99;Dels=0.00;FS=149.432;HaplotypeScore=2.7332;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=10;MQRankSum=-4.051;QD=4.42;ReadPosRankSum=0.198;SB=-8.017e+00 GT:AD:DP:GQ:PL 0/1:39,60:99:99:468,0,620 chrIII 314630 . G A 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;DP=92;Dels=0.00;FS=104.951;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=10;MQRankSum=-5.572;QD=1.80;ReadPosRankSum=-2.479;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:44,48:92:99:196,0,752 chrIII 314638 . G A 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;DP=89;Dels=0.00;FS=86.258;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=12;MQRankSum=-5.073;QD=2.07;ReadPosRankSum=-2.293;SB=-3.006e+00 GT:AD:DP:GQ:PL 0/1:43,46:89:99:214,0,640 chrIII 314655 . A C 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;DP=72;Dels=0.00;FS=55.388;HaplotypeScore=26.5129;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=9;MQRankSum=-3.843;QD=1.75;ReadPosRankSum=0.474;SB=-2.847e+00 GT:AD:DP:GQ:PL 0/1:40,32:72:99:156,0,495 chrIII 314657 . T G 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;DP=72;Dels=0.00;FS=64.463;HaplotypeScore=27.3016;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=9;MQRankSum=-3.678;QD=1.51;ReadPosRankSum=0.736;SB=-2.847e+00 GT:AD:DP:GQ:PL 0/1:40,32:72:99:139,0,592 chrIII 314661 . T A 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;DP=70;Dels=0.00;FS=61.722;HaplotypeScore=25.7242;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=7;MQRankSum=-3.493;QD=1.93;ReadPosRankSum=0.228;SB=-2.847e+00 GT:AD:DP:GQ:PL 0/1:35,35:70:99:165,0,518 chrIII 314666 . C T 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.120;DP=69;Dels=0.00;FS=59.443;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=6;MQRankSum=-3.274;QD=2.43;ReadPosRankSum=-0.105;SB=-2.900e+01 GT:AD:DP:GQ:PL 0/1:32,37:69:99:198,0,465 chrIII 314669 . T G 152.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.089;DP=69;Dels=0.00;FS=59.443;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=6;MQRankSum=-2.925;QD=2.20;ReadPosRankSum=0.133;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:32,37:69:99:182,0,508 chrIII 314672 . C T 167.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.257;DP=67;Dels=0.00;FS=56.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=5;MQRankSum=-3.071;QD=2.49;ReadPosRankSum=0.115;SB=-3.000e+01 GT:AD:DP:GQ:PL 0/1:30,37:67:99:197,0,431 chrIII 314674 . C G 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DP=67;Dels=0.00;FS=56.118;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=5;MQRankSum=-3.100;QD=2.28;ReadPosRankSum=0.201;SB=-2.900e+01 GT:AD:DP:GQ:PL 0/1:30,37:67:99:183,0,443 chrIII 314676 . T C 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;DP=64;Dels=0.00;FS=52.024;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.08;MQ0=4;MQRankSum=-3.086;QD=2.63;ReadPosRankSum=0.076;SB=-3.700e+01 GT:AD:DP:GQ:PL 0/1:27,37:64:99:198,0,428 chrIII 314684 . A G 172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.598;DP=73;Dels=0.00;FS=60.691;HaplotypeScore=4.8047;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=6;MQRankSum=-2.891;QD=2.36;ReadPosRankSum=-0.901;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:26,47:73:99:202,0,411 chrIII 314691 . G A 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;DP=61;Dels=0.00;FS=23.377;HaplotypeScore=2.8891;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=7;MQRankSum=-2.274;QD=0.67;ReadPosRankSum=2.012;SB=-1.455e+01 GT:AD:DP:GQ:PL 0/1:29,32:61:71:71,0,363 chrIII 314692 . C A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.429;DP=61;Dels=0.00;FS=23.377;HaplotypeScore=2.8891;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=7;MQRankSum=-2.029;QD=0.66;ReadPosRankSum=2.134;SB=-2.455e+01 GT:AD:DP:GQ:PL 0/1:29,32:61:70:70,0,367 chrIII 314696 . A G 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010;DP=55;Dels=0.00;FS=14.703;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=7;MQRankSum=-1.681;QD=0.87;ReadPosRankSum=1.250;SB=-3.855e+01 GT:AD:DP:GQ:PL 0/1:23,32:55:78:78,0,243 chrIII 314697 . A G 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371;DP=55;Dels=0.00;FS=14.703;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=7;MQRankSum=-1.875;QD=0.96;ReadPosRankSum=1.207;SB=-3.955e+01 GT:AD:DP:GQ:PL 0/1:23,32:55:83:83,0,247 chrIII 314699 . C T 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;DP=54;Dels=0.00;FS=18.550;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=7;MQRankSum=-1.807;QD=0.93;ReadPosRankSum=1.695;SB=-3.355e+01 GT:AD:DP:GQ:PL 0/1:22,32:54:80:80,0,212 chrIII 314705 . T C 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DP=60;Dels=0.00;FS=20.552;HaplotypeScore=2.8782;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=9;MQRankSum=-3.342;QD=0.24;ReadPosRankSum=0.744;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:17,43:60:44:44,0,200 chrIII 314724 . A G 440 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=8;MQRankSum=-0.318;QD=7.72;ReadPosRankSum=1.662;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:57:473,57,0 chrIII 314796 . T G 591 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=21.63;MQ0=16;MQRankSum=1.330;QD=10.02;ReadPosRankSum=0.685;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:75:624,75,0 chrIII 314846 . T A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;DP=100;Dels=0.00;FS=4.952;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=30.34;MQ0=18;MQRankSum=1.509;QD=0.27;ReadPosRankSum=-1.070;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,15:100:57:57,0,946 chrIII 314873 . A G 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;DP=111;Dels=0.00;FS=9.704;HaplotypeScore=4.9301;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=24;MQRankSum=2.565;QD=1.27;ReadPosRankSum=-0.253;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:87,24:111:99:171,0,1048 chrIII 314898 . A G 1976 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=20;QD=15.94;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2009,240,0 chrIII 314927 . T C 467.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;DP=107;Dels=0.00;FS=50.584;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.73;MQ0=28;MQRankSum=-2.165;QD=4.36;ReadPosRankSum=0.501;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:67,39:107:99:497,0,588 chrIII 314929 . A C 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;DP=105;Dels=0.00;FS=53.917;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.03;MQ0=28;MQRankSum=-1.488;QD=3.90;ReadPosRankSum=1.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,36:105:99:440,0,749 chrIII 315029 . C T 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630;DP=60;Dels=0.00;FS=46.456;HaplotypeScore=8.8244;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=12;MQRankSum=-1.315;QD=4.92;ReadPosRankSum=-0.690;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:25,35:60:99:325,0,140 chrIII 315137 . G A 815.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=71;Dels=0.00;FS=11.512;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=17;MQRankSum=-1.858;QD=11.48;ReadPosRankSum=-0.014;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:8,63:71:31:845,0,31 chrIII 315149 . G A 582.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;DP=58;Dels=0.00;FS=18.390;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=13;MQRankSum=-2.301;QD=10.03;ReadPosRankSum=0.787;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:10,48:58:99:612,0,100 chrIII 315186 . A C 416 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=13;MQRankSum=-1.600;QD=10.67;ReadPosRankSum=1.600;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,37:39:54:449,54,0 chrIII 315294 . G A 126.13 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=16;QD=4.67;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:159,18,0 chrIII 315319 . C T 114.13 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.05;MQ0=19;QD=4.39;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:18:147,18,0 chrIII 315337 . A G 149.06 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.96;MQ0=17;QD=5.96;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:1,24:25:21:182,21,0 chrIII 315375 . G A 310 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=23;QD=8.16;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:39:343,39,0 chrIII 315412 . T C 176.03 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=18;QD=5.68;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:24:209,24,0 chrIII 315418 . A T 223 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=22;MQRankSum=1.302;QD=5.87;ReadPosRankSum=1.302;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:1,37:38:30:256,30,0 chrIII 315471 . C A 254 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=14;MQRankSum=-0.193;QD=6.20;ReadPosRankSum=1.220;SB=0.011 GT:AD:DP:GQ:PL 1/1:1,40:41:33:287,33,0 chrIII 315479 . G A 256 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=14;QD=6.40;SB=-1.080e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:289,33,0 chrIII 315545 . A G 94.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;MQRankSum=0.736;QD=15.71;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:15:127,15,0 chrIII 315677 . A T 40.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=2;QD=5.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrIII 315715 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=1;QD=8.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:77,9,0 chrIII 315727 . G T 99.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=1;QD=9.93;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:1,9:10:15:132,15,0 chrIII 315729 . T C 114.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=12;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=1;MQRankSum=-1.107;QD=9.51;ReadPosRankSum=1.423;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:18:147,18,0 chrIII 315748 . A C 264 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=0;QD=5.87;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:45:36:297,36,0 chrIII 315803 . G T 1011 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=16.5604;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=6;QD=7.78;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1044,126,0 chrIII 315835 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;DP=171;Dels=0.00;FS=1.326;HaplotypeScore=24.7268;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=13;MQRankSum=2.471;QD=0.07;ReadPosRankSum=-0.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,15:171:42:42,0,826 chrIII 315841 . A G 572.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;DP=167;Dels=0.00;FS=2.865;HaplotypeScore=23.9381;MLEAC=1;MLEAF=0.500;MQ=19.42;MQ0=13;MQRankSum=3.532;QD=3.43;ReadPosRankSum=-4.873;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:110,57:167:99:602,0,339 chrIII 315854 . C T 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=163;Dels=0.00;FS=23.460;HaplotypeScore=19.3505;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=13;MQRankSum=2.832;QD=1.44;ReadPosRankSum=-6.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,26:163:99:265,0,696 chrIII 315865 . A G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=164;Dels=0.00;FS=6.593;HaplotypeScore=33.2919;MLEAC=1;MLEAF=0.500;MQ=18.88;MQ0=13;MQRankSum=0.656;QD=0.24;ReadPosRankSum=-5.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,11:164:70:70,0,865 chrIII 315866 . C A 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.072;DP=163;Dels=0.00;FS=2.747;HaplotypeScore=32.3003;MLEAC=1;MLEAF=0.500;MQ=18.80;MQ0=13;MQRankSum=3.469;QD=0.64;ReadPosRankSum=0.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:143,20:163:99:135,0,781 chrIII 315884 . A G 301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DP=140;Dels=0.01;FS=27.291;HaplotypeScore=20.0026;MLEAC=1;MLEAF=0.500;MQ=18.63;MQ0=9;MQRankSum=4.174;QD=2.15;ReadPosRankSum=5.349;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:95,44:139:99:331,0,196 chrIII 315896 . T G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;DP=99;Dels=0.00;FS=132.156;HaplotypeScore=47.4886;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=7;MQRankSum=-0.962;QD=0.40;ReadPosRankSum=2.133;SB=0.011 GT:AD:DP:GQ:PL 0/1:80,18:99:70:70,0,421 chrIII 315898 . C T 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;DP=98;Dels=0.00;FS=26.667;HaplotypeScore=52.5709;MLEAC=1;MLEAF=0.500;MQ=20.03;MQ0=7;MQRankSum=-1.680;QD=1.83;ReadPosRankSum=0.820;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:33,61:98:99:209,0,204 chrIII 315903 . A T 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DP=84;Dels=0.00;FS=150.867;HaplotypeScore=102.1937;MLEAC=1;MLEAF=0.500;MQ=18.90;MQ0=6;MQRankSum=0.013;QD=1.63;ReadPosRankSum=-1.690;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,56:84:99:167,0,130 chrIII 315909 . A T 177.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;DP=55;Dels=0.00;FS=29.100;HaplotypeScore=67.6276;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=3;MQRankSum=0.238;QD=3.22;ReadPosRankSum=1.313;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:12,36:55:26:207,0,26 chrIII 315919 . T C 85.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;DP=55;Dels=0.00;FS=135.093;HaplotypeScore=45.0662;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=1;MQRankSum=-0.657;QD=1.55;ReadPosRankSum=1.096;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:37,17:55:99:115,0,107 chrIII 315930 . G A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;DP=39;Dels=0.00;FS=40.467;HaplotypeScore=7.7901;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=0;MQRankSum=-0.130;QD=1.41;ReadPosRankSum=0.909;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,15:39:85:85,0,137 chrIII 315931 . G A 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;DP=37;Dels=0.00;FS=99.715;HaplotypeScore=7.7901;MLEAC=1;MLEAF=0.500;MQ=23.42;MQ0=0;MQRankSum=-0.851;QD=2.30;ReadPosRankSum=0.696;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:22,15:37:99:115,0,123 chrIII 315932 . A C 254 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=8.7844;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=7.06;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:36:287,36,0 chrIII 315934 . T G 262 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=10.5563;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=0;MQRankSum=-1.452;QD=7.08;ReadPosRankSum=1.639;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:36:295,36,0 chrIII 315941 . G A 255.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.111;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.5942;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=0;MQRankSum=-1.377;QD=6.54;ReadPosRankSum=0.666;SB=-2.221e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:18:288,18,0 chrIII 315951 . C A,G 72.88 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=9.8085;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.66;MQ0=1;QD=2.60;SB=-1.019e+02 GT:AD:DP:GQ:PL 1/2:0,11,17:28:34:132,86,80,46,0,34 chrIII 315990 . G A 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.909;DP=93;Dels=0.00;FS=66.828;HaplotypeScore=27.5994;MLEAC=1;MLEAF=0.500;MQ=17.28;MQ0=23;MQRankSum=0.222;QD=0.91;ReadPosRankSum=0.677;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:53,40:93:99:115,0,275 chrIII 315993 . G A 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;DP=96;Dels=0.00;FS=54.497;HaplotypeScore=22.4040;MLEAC=1;MLEAF=0.500;MQ=16.80;MQ0=25;MQRankSum=-1.351;QD=1.75;ReadPosRankSum=1.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,40:96:99:198,0,242 chrIII 315996 . T G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DP=101;Dels=0.00;FS=77.032;HaplotypeScore=21.6153;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=25;MQRankSum=-0.914;QD=0.19;ReadPosRankSum=0.053;SB=-3.522e+01 GT:AD:DP:GQ:PL 0/1:72,28:101:49:49,0,431 chrIII 316043 . G T 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;DP=133;Dels=0.00;FS=21.500;HaplotypeScore=9.2558;MLEAC=1;MLEAF=0.500;MQ=16.04;MQ0=27;MQRankSum=3.205;QD=1.33;ReadPosRankSum=4.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,17:133:99:207,0,461 chrIII 316044 . C A 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;DP=133;Dels=0.00;FS=21.500;HaplotypeScore=9.2558;MLEAC=1;MLEAF=0.500;MQ=16.04;MQ0=27;MQRankSum=3.271;QD=1.26;ReadPosRankSum=4.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,17:133:99:198,0,485 chrIII 316056 . G A 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;DP=124;Dels=0.00;FS=165.863;HaplotypeScore=78.9342;MLEAC=1;MLEAF=0.500;MQ=17.08;MQ0=12;MQRankSum=0.945;QD=3.52;ReadPosRankSum=4.266;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:52,72:124:99:466,0,239 chrIII 316059 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.390;DP=111;Dels=0.00;FS=101.693;HaplotypeScore=84.5065;MLEAC=1;MLEAF=0.500;MQ=17.69;MQ0=12;MQRankSum=-1.006;QD=0.44;ReadPosRankSum=0.774;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:79,32:111:79:79,0,614 chrIII 316063 . T C 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.709;DP=110;Dels=0.00;FS=10.106;HaplotypeScore=85.4224;MLEAC=1;MLEAF=0.500;MQ=17.73;MQ0=12;MQRankSum=-0.192;QD=2.05;ReadPosRankSum=-0.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,49:110:99:255,0,419 chrIII 316074 . T A 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451;DP=105;Dels=0.00;FS=44.730;HaplotypeScore=60.6499;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=8;MQRankSum=1.967;QD=0.89;ReadPosRankSum=-1.265;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,14:105:99:123,0,450 chrIII 316075 . T A 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;DP=103;Dels=0.00;FS=48.066;HaplotypeScore=59.6765;MLEAC=1;MLEAF=0.500;MQ=17.41;MQ0=7;MQRankSum=2.209;QD=1.10;ReadPosRankSum=-1.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,13:103:99:143,0,415 chrIII 316095 . T G 192.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.411;DP=88;Dels=0.00;FS=14.667;HaplotypeScore=82.5124;MLEAC=1;MLEAF=0.500;MQ=16.99;MQ0=3;MQRankSum=-0.371;QD=2.18;ReadPosRankSum=-2.708;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:34,48:88:41:222,0,41 chrIII 316105 . A G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;DP=74;Dels=0.00;FS=7.764;HaplotypeScore=50.2272;MLEAC=1;MLEAF=0.500;MQ=17.72;MQ0=2;MQRankSum=-1.606;QD=0.39;ReadPosRankSum=0.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,23:74:59:59,0,177 chrIII 316117 . C G 136.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.809;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=20.9795;MLEAC=2;MLEAF=1.00;MQ=17.77;MQ0=1;MQRankSum=1.040;QD=2.03;ReadPosRankSum=-1.733;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:1,29:67:21:169,21,0 chrIII 316126 . G A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=84;Dels=0.04;FS=22.641;HaplotypeScore=91.5944;MLEAC=1;MLEAF=0.500;MQ=18.18;MQ0=1;MQRankSum=2.044;QD=0.58;ReadPosRankSum=-3.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,10:81:79:79,0,200 chrIII 316158 . C A 444 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;DP=74;Dels=0.00;FS=7.813;HaplotypeScore=62.9781;MLEAC=2;MLEAF=1.00;MQ=18.08;MQ0=1;MQRankSum=-0.761;QD=6.00;ReadPosRankSum=-2.553;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:8,32:74:60:477,60,0 chrIII 316159 . C T 434 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DP=76;Dels=0.00;FS=4.695;HaplotypeScore=62.9781;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=1;MQRankSum=-1.133;QD=5.71;ReadPosRankSum=-2.437;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:9,67:76:60:467,60,0 chrIII 316164 . A G 422.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.799;DP=82;Dels=0.00;FS=34.551;HaplotypeScore=95.5126;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=1;MQRankSum=3.331;QD=5.15;ReadPosRankSum=0.033;SB=-2.261e+02 GT:AD:DP:GQ:PL 1/1:37,45:82:5:453,5,0 chrIII 316193 . T G 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;DP=116;Dels=0.00;FS=13.068;HaplotypeScore=42.1043;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=2;MQRankSum=-4.977;QD=0.43;ReadPosRankSum=2.120;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:78,38:116:80:80,0,944 chrIII 316220 . T C 244.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DP=106;Dels=0.00;FS=0.899;HaplotypeScore=63.1081;MLEAC=1;MLEAF=0.500;MQ=22.68;MQ0=3;MQRankSum=2.932;QD=2.30;ReadPosRankSum=1.672;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:82,24:106:99:274,0,760 chrIII 316221 . G A 469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.955;DP=102;Dels=0.00;FS=3.821;HaplotypeScore=63.1081;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=3;MQRankSum=1.331;QD=4.60;ReadPosRankSum=0.759;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:58,44:102:99:499,0,561 chrIII 316223 . A G 641.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756;DP=100;Dels=0.02;FS=0.872;HaplotypeScore=62.1348;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=3;MQRankSum=0.353;QD=6.41;ReadPosRankSum=1.899;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:32,56:98:99:671,0,291 chrIII 316238 . T A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=97;Dels=0.00;FS=5.281;HaplotypeScore=18.7854;MLEAC=1;MLEAF=0.500;MQ=22.57;MQ0=8;MQRankSum=-0.705;QD=0.73;ReadPosRankSum=3.282;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:79,18:97:99:101,0,1061 chrIII 316248 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783;DP=95;Dels=0.00;FS=6.065;HaplotypeScore=30.3617;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=8;MQRankSum=-1.681;QD=0.14;ReadPosRankSum=-3.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,14:95:43:43,0,1080 chrIII 316272 . A G 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=42.5520;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=5;MQRankSum=-0.200;QD=1.52;ReadPosRankSum=2.825;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:36,18:54:99:112,0,430 chrIII 316278 . C T 375.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=60.2698;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=2;MQRankSum=-0.433;QD=8.72;ReadPosRankSum=2.382;SB=-2.042e+02 GT:AD:DP:GQ:PL 1/1:4,38:43:17:408,17,0 chrIII 316279 . A G 119.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;DP=44;Dels=0.00;FS=10.935;HaplotypeScore=62.2425;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=2;MQRankSum=0.401;QD=2.70;ReadPosRankSum=-0.486;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,12:44:99:149,0,197 chrIII 316280 . G A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=68.6225;MLEAC=1;MLEAF=0.500;MQ=20.25;MQ0=2;MQRankSum=-1.817;QD=0.48;ReadPosRankSum=0.121;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,11:42:50:50,0,307 chrIII 316286 . A G 62.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;DP=35;Dels=0.00;FS=9.999;HaplotypeScore=45.1373;MLEAC=1;MLEAF=0.500;MQ=21.27;MQ0=1;MQRankSum=0.264;QD=1.77;ReadPosRankSum=-1.319;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:27,8:35:92:92,0,158 chrIII 316313 . T C 12.31 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DP=24;Dels=0.04;FS=7.312;HaplotypeScore=23.4675;MLEAC=1;MLEAF=0.500;MQ=21.84;MQ0=0;MQRankSum=0.899;QD=0.51;ReadPosRankSum=-0.060;SB=-4.448e-02 GT:AD:DP:GQ:PL 0/1:19,2:23:17:42,0,17 chrIII 316326 . G A 92.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=29;Dels=0.03;FS=5.259;HaplotypeScore=26.3991;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=0;MQRankSum=-0.446;QD=3.18;ReadPosRankSum=2.006;SB=-3.285e+01 GT:AD:DP:GQ:PL 1/1:3,25:28:15:125,15,0 chrIII 316334 . T G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=34;Dels=0.00;FS=11.927;HaplotypeScore=12.7283;MLEAC=1;MLEAF=0.500;MQ=20.33;MQ0=0;MQRankSum=-1.483;QD=0.82;ReadPosRankSum=0.898;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,25:34:58:58,0,83 chrIII 316366 . A G 192.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.8185;MLEAC=2;MLEAF=1.00;MQ=19.75;MQ0=0;QD=5.05;SB=-5.102e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:27:225,27,0 chrIII 316368 . G A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=39;Dels=0.00;FS=11.295;HaplotypeScore=6.8185;MLEAC=1;MLEAF=0.500;MQ=19.68;MQ0=0;MQRankSum=-1.826;QD=1.15;ReadPosRankSum=0.328;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,28:39:75:75,0,96 chrIII 316371 . C T 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DP=46;Dels=0.00;FS=9.638;HaplotypeScore=14.4491;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=0;MQRankSum=2.082;QD=0.74;ReadPosRankSum=-2.470;SB=-1.000e+01 GT:AD:DP:GQ:PL 0/1:41,5:46:64:64,0,155 chrIII 316377 . A G 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.878;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=50.4937;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=0;MQRankSum=-1.581;QD=0.94;ReadPosRankSum=2.100;SB=-6.436e-03 GT:AD:DP:GQ:PL 0/1:4,31:54:59:81,0,59 chrIII 316422 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.7599;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=0;MQRankSum=0.928;QD=1.23;ReadPosRankSum=1.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,6:40:79:79,0,164 chrIII 316428 . G A 290 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=23.5666;MLEAC=2;MLEAF=1.00;MQ=20.98;MQ0=0;QD=7.63;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:39:323,39,0 chrIII 316431 . G A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=24.3553;MLEAC=1;MLEAF=0.500;MQ=21.52;MQ0=0;MQRankSum=0.620;QD=1.21;ReadPosRankSum=0.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,6:38:76:76,0,183 chrIII 316433 . G A 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=20.4226;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=0;MQRankSum=-0.400;QD=4.25;ReadPosRankSum=-1.519;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:7,29:36:78:183,0,78 chrIII 316442 . C T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.820;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=20.3922;MLEAC=1;MLEAF=0.500;MQ=21.67;MQ0=0;MQRankSum=0.243;QD=0.77;ReadPosRankSum=-0.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,5:34:56:56,0,176 chrIII 316449 . G A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DP=28;Dels=0.00;FS=3.174;HaplotypeScore=20.5919;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=0;MQRankSum=0.752;QD=2.64;ReadPosRankSum=0.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,13:28:99:104,0,115 chrIII 316454 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;DP=28;Dels=0.00;FS=3.385;HaplotypeScore=25.5754;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=0.526;QD=0.47;ReadPosRankSum=1.798;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:20,7:28:43:43,0,115 chrIII 316472 . G A 129.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.1513;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=0;QD=8.07;SB=-7.388e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:162,21,0 chrIII 316476 . T G 65.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=14.6040;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=0;MQRankSum=0.085;QD=4.06;ReadPosRankSum=0.764;SB=1.43 GT:AD:DP:GQ:PL 0/1:2,13:16:22:95,0,22 chrIII 316479 . A G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=12.6883;MLEAC=1;MLEAF=0.500;MQ=22.66;MQ0=0;MQRankSum=0.847;QD=1.32;ReadPosRankSum=1.482;SB=-6.530e-03 GT:AD:DP:GQ:PL 0/1:7,9:16:51:51,0,52 chrIII 316502 . A T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;DP=19;Dels=0.00;FS=7.270;HaplotypeScore=9.4359;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=0;MQRankSum=-2.287;QD=1.11;ReadPosRankSum=0.404;SB=0.162 GT:AD:DP:GQ:PL 0/1:3,13:19:37:51,0,37 chrIII 316511 . T G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DP=23;Dels=0.00;FS=5.836;HaplotypeScore=30.0786;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=0;MQRankSum=1.085;QD=1.00;ReadPosRankSum=-0.735;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:17,6:23:52:53,0,52 chrIII 316517 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=31.7832;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=0;MQRankSum=0.831;QD=0.84;ReadPosRankSum=0.769;SB=-6.526e-03 GT:AD:DP:GQ:PL 0/1:12,11:25:51:51,0,55 chrIV 61 . A C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=14.8047;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=3;MQRankSum=-1.626;QD=0.66;ReadPosRankSum=-1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,4:20:43:43,0,148 chrIV 1394 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.084;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=13.9899;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=2;MQRankSum=1.084;QD=1.04;ReadPosRankSum=-0.394;SB=1.24 GT:AD:DP:GQ:PL 1/1:15,5:20:6:52,6,0 chrIV 1401 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=17.3315;MLEAC=2;MLEAF=1.00;MQ=20.26;MQ0=2;MQRankSum=-1.107;QD=1.15;ReadPosRankSum=0.580;SB=1.24 GT:AD:DP:GQ:PL 1/1:5,14:19:6:53,6,0 chrIV 1404 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=14.3853;MLEAC=2;MLEAF=1.00;MQ=20.26;MQ0=2;MQRankSum=1.323;QD=1.15;ReadPosRankSum=0.063;SB=1.24 GT:AD:DP:GQ:PL 1/1:16,3:19:6:53,6,0 chrIV 1633 . T G 349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720;DP=34;Dels=0.00;FS=1.927;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=2;MQRankSum=3.286;QD=10.26;ReadPosRankSum=2.807;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:10,24:34:45:382,45,0 chrIV 1635 . G T 377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=35;Dels=0.00;FS=1.927;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=3;MQRankSum=3.329;QD=10.77;ReadPosRankSum=2.372;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:10,25:35:45:410,45,0 chrIV 1647 . C T 360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.023;DP=35;Dels=0.00;FS=1.927;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=3;MQRankSum=3.416;QD=10.29;ReadPosRankSum=0.892;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:10,25:35:45:393,45,0 chrIV 1730 . G A 45.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=19.02;MQ0=2;QD=2.42;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:78,9,0 chrIV 1810 . G C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=14;Dels=0.00;FS=15.091;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=0;MQRankSum=2.400;QD=1.13;ReadPosRankSum=1.067;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:5,9:14:6:47,6,0 chrIV 1817 . G A 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=2.13;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:46,6,0 chrIV 1819 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.57;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrIV 1820 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 1821 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 1822 . A G 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.57;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrIV 1827 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=2.11;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:48,6,0 chrIV 1828 . G C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=2.11;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:48,6,0 chrIV 1831 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=1.53;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:48,6,0 chrIV 1849 . C T 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=20;Dels=0.00;FS=22.330;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=1;MQRankSum=-0.066;QD=2.10;ReadPosRankSum=1.661;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:3,17:20:9:74,9,0 chrIV 1850 . T G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=20;Dels=0.00;FS=9.777;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=1;MQRankSum=0.091;QD=2.15;ReadPosRankSum=0.456;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:2,18:20:9:75,9,0 chrIV 1857 . A T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;DP=22;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=2;MQRankSum=0.315;QD=2.23;ReadPosRankSum=1.323;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:4,18:22:9:81,9,0 chrIV 1858 . G T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.953;DP=22;Dels=0.00;FS=22.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.48;MQ0=2;MQRankSum=0.819;QD=2.04;ReadPosRankSum=1.071;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:2,20:22:9:77,9,0 chrIV 1867 . C T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.351;DP=27;Dels=0.00;FS=24.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=2;MQRankSum=1.152;QD=1.67;ReadPosRankSum=-0.250;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:2,25:27:9:77,9,0 chrIV 1875 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=2;QD=1.61;SB=-2.898e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:74,9,0 chrIV 1930 . T G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=22;Dels=0.00;FS=5.254;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=3;MQRankSum=2.192;QD=2.14;ReadPosRankSum=2.059;SB=-5.398e+01 GT:AD:DP:GQ:PL 1/1:5,17:22:9:79,9,0 chrIV 1932 . A C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=23;Dels=0.00;FS=8.016;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=4;MQRankSum=1.552;QD=1.91;ReadPosRankSum=1.369;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:5,18:23:9:76,9,0 chrIV 1939 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=4;QD=1.96;SB=-5.698e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:79,9,0 chrIV 1963 . A G 258 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=4;QD=8.06;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:4,28:32:33:291,33,0 chrIV 2008 . T G 310 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=5;QD=8.61;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:39:343,39,0 chrIV 2009 . A G 311 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=5;QD=8.64;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:5,31:36:39:344,39,0 chrIV 2035 . G T 281 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.8135;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=3;QD=8.26;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:314,36,0 chrIV 2046 . T G 119.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=29;Dels=0.00;FS=14.771;HaplotypeScore=1.9581;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=4;MQRankSum=-0.645;QD=4.10;ReadPosRankSum=3.295;SB=-2.701e+00 GT:AD:DP:GQ:PL 0/1:9,20:29:21:149,0,21 chrIV 2060 . G C 125.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=4;QD=4.81;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,22:26:18:158,18,0 chrIV 2062 . C T 135.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=4;QD=5.20;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:4,22:26:18:168,18,0 chrIV 2066 . G T 135.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=4;QD=4.66;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,25:29:18:168,18,0 chrIV 2072 . T C 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=3;QD=4.61;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,25:28:18:162,18,0 chrIV 2076 . G A 136.13 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=3;QD=5.24;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:3,22:26:18:169,18,0 chrIV 2087 . A G 73.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=2;QD=3.20;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,20:23:12:106,12,0 chrIV 2112 . T C 79.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=2;QD=3.98;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:112,12,0 chrIV 2135 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=7;QD=0.70;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:6:48,6,0 chrIV 2228 . A T 931 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=1;QD=16.62;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:964,108,0 chrIV 2230 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=1;MQRankSum=-0.495;QD=16.00;ReadPosRankSum=1.670;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:945,108,0 chrIV 2306 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=64;Dels=0.00;FS=4.569;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.78;MQ0=0;MQRankSum=0.467;QD=20.64;ReadPosRankSum=1.677;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1354,153,0 chrIV 2346 . A T 1772 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=23.63;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1805,198,0 chrIV 2573 . G C 446 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=1;QD=8.92;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:54:479,54,0 chrIV 2587 . G C 468 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=9.00;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:57:501,57,0 chrIV 2621 . C T 632 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=8;MQRankSum=-0.236;QD=12.15;ReadPosRankSum=0.787;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:72:665,72,0 chrIV 2685 . T C 664 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=16;QD=12.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,52:55:84:697,84,0 chrIV 2778 . A G 507 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=13;QD=12.07;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:12,30:42:63:540,63,0 chrIV 2854 . A G 171.03 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.10;MQ0=33;QD=3.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:31,18:50:24:204,24,0 chrIV 2871 . T C 73.51 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.92;MQ0=37;QD=1.41;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:36,16:52:12:106,12,0 chrIV 2881 . G A 73.51 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.56;MQ0=41;QD=1.31;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:40,16:56:12:106,12,0 chrIV 2902 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.83;MQ0=47;QD=0.75;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:47,17:64:9:80,9,0 chrIV 2920 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.50;MQ0=37;QD=0.48;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:35,17:52:6:56,6,0 chrIV 3230 . C T 363 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.01;MQ0=20;QD=6.98;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:45:396,45,0 chrIV 3231 . A C 338 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.86;MQ0=21;MQRankSum=-1.625;QD=6.38;ReadPosRankSum=0.866;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:2,51:53:42:371,42,0 chrIV 3468 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=26;MQRankSum=-0.720;QD=0.59;ReadPosRankSum=1.380;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,30:32:6:50,6,0 chrIV 3475 . G A 91.26 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.32;MQ0=28;QD=2.40;SB=-5.476e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:15:124,15,0 chrIV 3494 . C A 291 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=23;QD=6.33;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:36:324,36,0 chrIV 3590 . C T 1434 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=11;QD=17.49;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1467,165,0 chrIV 3873 . C A 515 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=14.71;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:60:548,60,0 chrIV 3878 . T C 518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=8.239;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=1.126;QD=12.95;ReadPosRankSum=1.646;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:63:551,63,0 chrIV 3986 . T C 45.97 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.36;MQ0=44;QD=0.81;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,56:57:9:78,9,0 chrIV 4085 . A G 126.13 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.37;MQ0=27;QD=3.71;SB=-7.863e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:18:159,18,0 chrIV 4096 . C T 120.13 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.69;MQ0=25;QD=3.75;SB=-4.863e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:153,18,0 chrIV 4232 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=10;QD=1.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:12:6:52,6,0 chrIV 4442 . C T 308 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=14;QD=7.90;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:39:341,39,0 chrIV 4705 . T C 262 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=3;QD=13.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:33:295,33,0 chrIV 4708 . C T 267 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=2;QD=14.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:300,33,0 chrIV 4716 . G T 483 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=1;QD=19.32;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:57:516,57,0 chrIV 4961 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=11.07;MQ0=21;QD=2.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:12:107,12,0 chrIV 5036 . G A 74.51 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=17;QD=2.40;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:12:107,12,0 chrIV 5047 . C T 74.51 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=16;QD=2.87;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:12:107,12,0 chrIV 5128 . T G 68.51 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.55;MQ0=16;QD=2.45;SB=-4.675e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:101,12,0 chrIV 5223 . G A 289 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=24;QD=5.07;SB=-8.300e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:36:322,36,0 chrIV 5608 . T C 372 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=17;QD=8.65;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:45:405,45,0 chrIV 5622 . G C 151.06 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.61;MQ0=23;QD=4.08;SB=-1.018e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:184,21,0 chrIV 5644 . T A 49.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.13;MQ0=23;QD=1.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:9:82,9,0 chrIV 10720 . A G 147.06 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=9.80;MQ0=35;QD=3.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:21:180,21,0 chrIV 10955 . C T 246 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.13;MQ0=18;QD=8.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:30:279,30,0 chrIV 10958 . G A 208.01 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.41;MQ0=18;QD=7.17;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:27:241,27,0 chrIV 11066 . C G 388 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=8;QD=12.52;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:48:421,48,0 chrIV 11216 . T G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.28;MQ0=32;QD=0.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:36:6:49,6,0 chrIV 11369 . C T 76.51 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.64;MQ0=14;QD=3.33;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:109,12,0 chrIV 11408 . C G 117.13 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.51;MQ0=19;QD=3.35;SB=-7.488e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:150,18,0 chrIV 11429 . G A 173.03 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=14.36;MQ0=20;QD=4.22;SB=-1.069e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:24:206,24,0 chrIV 11467 . C T 257 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.30;MQ0=17;QD=7.34;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:33:290,33,0 chrIV 11492 . C T 230 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.39;MQ0=18;QD=7.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:30:263,30,0 chrIV 11551 . T C 69.51 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.07;MQ0=23;QD=2.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:12:102,12,0 chrIV 11587 . C T 47.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.94;MQ0=17;QD=2.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:9:80,9,0 chrIV 12146 . T C 45.97 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=14.10;MQ0=13;QD=0.94;SB=-5.347e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:9:78,9,0 chrIV 12158 . T C 95.26 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=11;QD=2.07;SB=-7.714e+01 GT:AD:DP:GQ:PL 1/1:5,41:46:15:128,15,0 chrIV 12884 . C T 72.51 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.62;MQ0=27;QD=1.37;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,53:53:12:105,12,0 chrIV 13965 . G A 679 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=24;QD=11.51;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:712,78,0 chrIV 14043 . A C 1496 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=6;QD=20.49;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1529,177,0 chrIV 14332 . T A 233 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=25;QD=5.30;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:30:266,30,0 chrIV 14618 . A G 70.51 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=23;QD=2.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:12:103,12,0 chrIV 14952 . C T 62.51 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=13;QD=3.13;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:95,12,0 chrIV 14965 . T G 69.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=8;QD=4.63;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:102,12,0 chrIV 15005 . A G 428 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.29;MQ0=8;QD=13.81;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:461,54,0 chrIV 16450 . T C 430 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=10.82;MQ0=78;QD=4.22;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:62,40:102:54:463,54,0 chrIV 16794 . T C 122.13 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.28;MQ0=25;QD=3.13;SB=-5.088e+01 GT:AD:DP:GQ:PL 1/1:0,37:39:18:155,18,0 chrIV 16971 . G A 677 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=11;QD=17.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,36:39:78:710,78,0 chrIV 16977 . T C 693 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=7;MQRankSum=-1.733;QD=17.77;ReadPosRankSum=1.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,36:39:84:726,84,0 chrIV 17082 . T C 545 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=2;QD=19.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:66:578,66,0 chrIV 17107 . C T 275 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=16.18;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:308,33,0 chrIV 17151 . C T 204.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=12.041;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=1.302;QD=12.75;ReadPosRankSum=-1.302;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:1,15:16:27:237,27,0 chrIV 17231 . A G 705 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.870;DP=54;Dels=0.00;FS=9.546;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=7;MQRankSum=2.029;QD=13.06;ReadPosRankSum=0.712;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:7,47:54:43:738,43,0 chrIV 17258 . C T 992 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=84;Dels=0.00;FS=19.178;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=9;MQRankSum=2.501;QD=11.81;ReadPosRankSum=-1.933;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:9,75:84:48:1025,48,0 chrIV 17352 . A G 1710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;DP=126;Dels=0.00;FS=9.365;HaplotypeScore=5.6262;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=10;MQRankSum=5.392;QD=13.57;ReadPosRankSum=0.215;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:34,92:126:93:1740,0,93 chrIV 17374 . T C 1872.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;DP=133;Dels=0.00;FS=14.126;HaplotypeScore=5.6640;MLEAC=1;MLEAF=0.500;MQ=42.58;MQ0=9;MQRankSum=5.513;QD=14.08;ReadPosRankSum=1.352;SB=-3.410e+02 GT:AD:DP:GQ:PL 0/1:37,96:133:20:1902,0,20 chrIV 17421 . A G 1201 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=81;Dels=0.00;FS=11.985;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=7;MQRankSum=0.217;QD=14.83;ReadPosRankSum=2.383;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1234,141,0 chrIV 17461 . T C 976 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=18.77;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1009,114,0 chrIV 17615 . G A 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.106;DP=108;Dels=0.00;FS=4.166;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=11;MQRankSum=1.853;QD=0.41;ReadPosRankSum=-2.424;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:87,20:108:74:74,0,1354 chrIV 17660 . T C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DP=117;Dels=0.00;FS=22.581;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=10;MQRankSum=-2.343;QD=0.44;ReadPosRankSum=0.820;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,26:117:82:82,0,1399 chrIV 17772 . A T 2453 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=130;Dels=0.00;FS=3.998;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=12;MQRankSum=-0.059;QD=18.87;ReadPosRankSum=1.673;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2486,273,0 chrIV 17886 . A G 397.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=71;Dels=0.00;FS=43.978;HaplotypeScore=17.6613;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=3;MQRankSum=2.381;QD=5.59;ReadPosRankSum=1.790;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:27,44:71:99:427,0,114 chrIV 17888 . C T 413.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;DP=71;Dels=0.00;FS=43.978;HaplotypeScore=13.8332;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=3;MQRankSum=2.034;QD=5.82;ReadPosRankSum=2.034;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:27,44:71:99:443,0,130 chrIV 17889 . C T 413.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;DP=71;Dels=0.00;FS=43.978;HaplotypeScore=13.8332;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=3;MQRankSum=2.008;QD=5.82;ReadPosRankSum=2.175;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:27,44:71:99:443,0,101 chrIV 17893 . T G 277.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;DP=60;Dels=0.00;FS=46.461;HaplotypeScore=10.8282;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=3.787;QD=4.62;ReadPosRankSum=3.215;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:20,38:60:96:307,0,96 chrIV 17894 . T C 271.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;DP=60;Dels=0.00;FS=46.461;HaplotypeScore=9.9457;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=3.313;QD=4.52;ReadPosRankSum=3.182;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:20,38:60:99:301,0,101 chrIV 17898 . C T 443 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.2117;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=0;QD=7.64;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:54:476,54,0 chrIV 17906 . T C 268 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=8.65;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:301,36,0 chrIV 17907 . A G 252 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=0;QD=8.69;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:285,33,0 chrIV 17909 . A G 226 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=8.37;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:259,30,0 chrIV 17910 . A G 216 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=8.00;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:249,30,0 chrIV 17911 . G C 222 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=8.22;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:255,30,0 chrIV 17912 . T C 226 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=8.37;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:259,30,0 chrIV 17917 . G A 239 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=0;QD=5.83;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:272,30,0 chrIV 17918 . A C 225 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=0;QD=5.49;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:258,30,0 chrIV 17921 . C A 232 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=5.04;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:30:265,30,0 chrIV 17955 . C T 454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DP=64;Dels=0.00;FS=2.668;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=3;MQRankSum=2.086;QD=7.09;ReadPosRankSum=-0.628;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:54:487,54,0 chrIV 17973 . C T 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=81;Dels=0.00;FS=3.712;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=3;MQRankSum=3.741;QD=13.42;ReadPosRankSum=-0.478;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:7,74:81:99:1120,123,0 chrIV 18120 . G A 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DP=121;Dels=0.00;FS=3.716;HaplotypeScore=11.8449;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=1;MQRankSum=0.693;QD=19.69;ReadPosRankSum=-1.068;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2415,252,0 chrIV 18141 . A C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.103;DP=109;Dels=0.00;FS=32.509;HaplotypeScore=19.4423;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=2;MQRankSum=4.649;QD=17.07;ReadPosRankSum=-0.329;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:15,94:109:99:1894,136,0 chrIV 18195 . A C 778.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.322;DP=81;Dels=0.00;FS=2.321;HaplotypeScore=18.7263;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=5;MQRankSum=0.585;QD=9.61;ReadPosRankSum=1.945;SB=-2.903e+02 GT:AD:DP:GQ:PL 1/1:7,63:81:15:811,15,0 chrIV 18200 . A G 643.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=79;Dels=0.00;FS=14.500;HaplotypeScore=19.8779;MLEAC=1;MLEAF=0.500;MQ=30.46;MQ0=5;MQRankSum=0.000;QD=8.14;ReadPosRankSum=2.290;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:8,71:79:27:673,0,27 chrIV 18219 . A G 461.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=96;Dels=0.00;FS=8.089;HaplotypeScore=5.5530;MLEAC=1;MLEAF=0.500;MQ=28.75;MQ0=6;MQRankSum=2.472;QD=4.80;ReadPosRankSum=4.250;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:45,50:96:99:491,0,156 chrIV 18231 . T A 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.839;DP=99;Dels=0.00;FS=9.811;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=10;MQRankSum=3.336;QD=4.53;ReadPosRankSum=0.153;SB=-1.270e+02 GT:AD:DP:GQ:PL 0/1:49,50:99:99:478,0,197 chrIV 18264 . T A 372 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=74;Dels=0.00;FS=5.829;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=12;MQRankSum=2.161;QD=5.03;ReadPosRankSum=-3.411;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:24,50:74:31:405,31,0 chrIV 18303 . C T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.675;DP=50;Dels=0.00;FS=26.202;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=8;MQRankSum=4.018;QD=4.62;ReadPosRankSum=4.422;SB=-3.602e+01 GT:AD:DP:GQ:PL 0/1:26,24:50:29:261,0,29 chrIV 18325 . T C 348 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=1;QD=10.55;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:381,45,0 chrIV 18333 . A G 386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=1;MQRankSum=-0.044;QD=9.65;ReadPosRankSum=1.644;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:48:419,48,0 chrIV 18342 . A G 413 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.59;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:446,51,0 chrIV 18345 . G A 454 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=11.95;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:487,54,0 chrIV 18351 . A G 414 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=17.0850;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=10.89;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:51:447,51,0 chrIV 18369 . T A 179.03 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=4.71;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:212,24,0 chrIV 18375 . C G 173.03 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=4.55;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:206,24,0 chrIV 18376 . T C 183.03 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=4.82;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:216,24,0 chrIV 18377 . T C 180.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=6.368;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=0.489;QD=4.62;ReadPosRankSum=1.644;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:24:213,24,0 chrIV 18381 . A G 196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=3.92;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:229,27,0 chrIV 18384 . A G 222 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.44;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:255,30,0 chrIV 18388 . C G 224 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.48;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:257,30,0 chrIV 18389 . C T 235 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.70;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:268,30,0 chrIV 18402 . G A 182.03 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.43;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:215,24,0 chrIV 18404 . C A 186.03 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.51;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:219,24,0 chrIV 18405 . A G 180.03 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.40;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:24:213,24,0 chrIV 18408 . T A 183.03 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=3.05;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:24:216,24,0 chrIV 18411 . A G 175.03 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=2.92;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:24:208,24,0 chrIV 18426 . C T 184.03 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=3.12;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:24:217,24,0 chrIV 18456 . A G 453 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=8.71;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:486,54,0 chrIV 18457 . A G 439 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=8.44;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:472,54,0 chrIV 18459 . C T 459 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=8.83;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:492,54,0 chrIV 18467 . C G 509 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=8.34;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:63:542,63,0 chrIV 18477 . G A 516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.080;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;MQRankSum=1.679;QD=7.94;ReadPosRankSum=-0.133;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:60:549,60,0 chrIV 18483 . G A 516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.968;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;MQRankSum=1.681;QD=7.59;ReadPosRankSum=-0.509;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:63:549,63,0 chrIV 18486 . T C 560 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=1.681;QD=8.36;ReadPosRankSum=-0.491;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:69:593,69,0 chrIV 18495 . A G 525 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=57;Dels=0.00;FS=9.509;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;MQRankSum=0.983;QD=9.21;ReadPosRankSum=1.626;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:66:558,66,0 chrIV 18497 . T C 528 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.354;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;MQRankSum=1.669;QD=9.60;ReadPosRankSum=-1.291;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:66:561,66,0 chrIV 18498 . G A 544 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;MQRankSum=1.669;QD=9.89;ReadPosRankSum=-1.291;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:66:577,66,0 chrIV 18499 . C A 561 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=10.20;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:594,66,0 chrIV 18504 . A G 561 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=9.51;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:69:594,69,0 chrIV 18513 . T C 474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.911;DP=55;Dels=0.00;FS=6.598;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=2.360;QD=8.62;ReadPosRankSum=1.326;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:57:507,57,0 chrIV 18516 . A G 439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;MQRankSum=0.433;QD=7.84;ReadPosRankSum=1.609;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:57:472,57,0 chrIV 18531 . A T 437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=52;Dels=0.00;FS=3.768;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=1.247;QD=8.40;ReadPosRankSum=1.663;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,49:52:54:470,54,0 chrIV 18540 . A G 410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.772;DP=49;Dels=0.00;FS=11.415;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;MQRankSum=2.857;QD=8.37;ReadPosRankSum=1.314;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:51:443,51,0 chrIV 18571 . C G 245.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;DP=41;Dels=0.00;FS=34.771;HaplotypeScore=13.7164;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=3;MQRankSum=3.819;QD=5.98;ReadPosRankSum=2.195;SB=-1.282e+02 GT:AD:DP:GQ:PL 0/1:11,29:41:11:275,0,11 chrIV 18588 . G A 274.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DP=43;Dels=0.00;FS=38.264;HaplotypeScore=23.5438;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=5;MQRankSum=3.983;QD=6.38;ReadPosRankSum=0.515;SB=-1.094e+02 GT:AD:DP:GQ:PL 0/1:14,29:43:7:304,0,7 chrIV 18590 . T G 260.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=44;Dels=0.00;FS=41.622;HaplotypeScore=23.5438;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=5;MQRankSum=4.133;QD=5.92;ReadPosRankSum=0.563;SB=-9.935e+01 GT:AD:DP:GQ:PL 0/1:15,29:44:8:290,0,8 chrIV 18603 . C T 224.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;DP=46;Dels=0.00;FS=37.322;HaplotypeScore=20.8035;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=6;MQRankSum=2.696;QD=4.87;ReadPosRankSum=0.333;SB=-7.912e+01 GT:AD:DP:GQ:PL 0/1:17,29:46:13:254,0,13 chrIV 18605 . G A 221.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=46;Dels=0.00;FS=52.587;HaplotypeScore=20.8035;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=6;MQRankSum=3.871;QD=4.81;ReadPosRankSum=-0.099;SB=-8.319e+01 GT:AD:DP:GQ:PL 0/1:20,26:46:11:251,0,11 chrIV 18606 . A G 215.09 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;DP=46;Dels=0.00;FS=37.322;HaplotypeScore=18.0631;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=6;MQRankSum=2.878;QD=4.68;ReadPosRankSum=-0.030;SB=-8.410e+01 GT:AD:DP:GQ:PL 0/1:17,29:46:14:245,0,14 chrIV 18612 . C T 219.27 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.016;DP=48;Dels=0.00;FS=53.566;HaplotypeScore=17.0236;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=6;MQRankSum=3.775;QD=4.57;ReadPosRankSum=-0.680;SB=-8.028e+01 GT:AD:DP:GQ:PL 0/1:20,28:48:9:249,0,9 chrIV 18615 . T A 208.05 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;DP=48;Dels=0.00;FS=47.215;HaplotypeScore=16.1077;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=6;MQRankSum=3.293;QD=4.33;ReadPosRankSum=-1.139;SB=-7.906e+01 GT:AD:DP:GQ:PL 0/1:17,28:48:17:238,0,17 chrIV 18624 . T G 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;DP=46;Dels=0.00;FS=54.401;HaplotypeScore=11.6121;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=6;MQRankSum=3.444;QD=2.78;ReadPosRankSum=-2.092;SB=-1.502e+01 GT:AD:DP:GQ:PL 0/1:17,27:46:26:158,0,26 chrIV 18651 . G A 34.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;DP=29;Dels=0.00;FS=46.361;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=5;MQRankSum=3.557;QD=1.18;ReadPosRankSum=-0.381;SB=-3.084e+00 GT:AD:DP:GQ:PL 0/1:11,18:29:15:64,0,15 chrIV 18663 . C T 49.97 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=4;QD=2.08;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:9:82,9,0 chrIV 18671 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.478;DP=21;Dels=0.00;FS=27.868;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=3;MQRankSum=2.920;QD=1.04;ReadPosRankSum=1.646;SB=-2.377e+01 GT:AD:DP:GQ:PL 1/1:7,14:21:6:53,6,0 chrIV 18675 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;DP=21;Dels=0.00;FS=27.433;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=2;MQRankSum=3.194;QD=1.95;ReadPosRankSum=2.268;SB=-4.398e+01 GT:AD:DP:GQ:PL 1/1:7,14:21:9:73,9,0 chrIV 18682 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.009;DP=20;Dels=0.00;FS=19.417;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=2;MQRankSum=2.920;QD=3.43;ReadPosRankSum=2.389;SB=-7.052e+01 GT:AD:DP:GQ:PL 1/1:6,14:20:12:101,12,0 chrIV 18683 . G C 66.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.752;DP=19;Dels=0.00;FS=19.417;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=1;MQRankSum=2.920;QD=3.50;ReadPosRankSum=2.496;SB=-6.952e+01 GT:AD:DP:GQ:PL 1/1:5,14:19:12:99,12,0 chrIV 18702 . A C 177.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=10.41;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:210,24,0 chrIV 18805 . C T 322 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;QD=11.10;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:39:355,39,0 chrIV 18807 . G C 323 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.54;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:356,39,0 chrIV 18882 . G A 688 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=15.29;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:721,78,0 chrIV 18989 . G C 696 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=19.33;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:729,84,0 chrIV 19084 . T C 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.585;QD=21.96;ReadPosRankSum=1.659;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1065,120,0 chrIV 19119 . A G 740 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=23.87;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:773,84,0 chrIV 19143 . C T 519 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=18.54;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:552,60,0 chrIV 19153 . T C 324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-1.157;QD=12.00;ReadPosRankSum=1.805;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:2,25:27:39:357,39,0 chrIV 19177 . T C 342 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=11.40;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:42:375,42,0 chrIV 19180 . A G 335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=5.593;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;MQRankSum=-1.016;QD=11.55;ReadPosRankSum=1.614;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:42:368,42,0 chrIV 19248 . G A 287 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=13.67;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:320,36,0 chrIV 19249 . C T 300 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.04;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:333,36,0 chrIV 19251 . G A 321 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.96;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:39:354,39,0 chrIV 19252 . G A 313 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=13.61;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:39:346,39,0 chrIV 19374 . G A 595 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=13.22;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:628,69,0 chrIV 19376 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=12.30;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:574,63,0 chrIV 19413 . C G 904 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=16.74;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:937,108,0 chrIV 19445 . C T 844 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=14.81;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:96:877,96,0 chrIV 19455 . T C 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=53;Dels=0.00;FS=4.065;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.442;QD=13.87;ReadPosRankSum=1.664;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,50:53:87:768,87,0 chrIV 19588 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=24.51;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1773,192,0 chrIV 19646 . A T 1257 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=23.72;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1290,141,0 chrIV 19790 . A G 764 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=17.77;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:797,90,0 chrIV 19880 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=9.88;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:942,102,0 chrIV 19929 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.18;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1415,156,0 chrIV 19934 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.60;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1465,156,0 chrIV 19994 . A G 551 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.22;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:584,69,0 chrIV 20081 . G A 669 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.68;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:702,75,0 chrIV 20112 . T G 744 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=14.88;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:777,90,0 chrIV 20160 . C G 872 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=15.03;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:905,102,0 chrIV 20223 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.5077;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=16.05;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:75:691,75,0 chrIV 20444 . A C 403 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=16.12;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:436,48,0 chrIV 20550 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.41;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrIV 20578 . C T 271 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.36;SB=-2.900e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:304,33,0 chrIV 20642 . T C 467 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=23.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:57:500,57,0 chrIV 20659 . T C 361 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=21.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:45:394,45,0 chrIV 20742 . G C 653 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=22.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:78:686,78,0 chrIV 20779 . T G 672 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=15.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:81:705,81,0 chrIV 20785 . G A 569 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=10.94;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,50:52:69:602,69,0 chrIV 20964 . A T 788 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.74;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:821,90,0 chrIV 20969 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.20;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:881,93,0 chrIV 20989 . T G 837 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.93;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:870,96,0 chrIV 21079 . A C 74.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;MQRankSum=1.750;QD=1.38;ReadPosRankSum=-3.241;SB=2.49 GT:AD:DP:GQ:PL 1/1:49,5:54:12:107,12,0 chrIV 21086 . A T 695 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=13.90;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:78:728,78,0 chrIV 21113 . G T 544 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=9.07;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:66:577,66,0 chrIV 21119 . A T 674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;MQRankSum=-0.982;QD=11.23;ReadPosRankSum=1.675;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:81:707,81,0 chrIV 21165 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=19.56;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2106,231,0 chrIV 21255 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.80;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1985,222,0 chrIV 21300 . G T 2118 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.63;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2151,231,0 chrIV 21337 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.44;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1748,189,0 chrIV 21362 . C G 1813 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=20.84;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1846,210,0 chrIV 21380 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=18.92;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1528,171,0 chrIV 21431 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=20.25;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1268,141,0 chrIV 21450 . A T 1079 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=18.29;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1112,126,0 chrIV 21476 . C A 1424 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=18.74;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1457,168,0 chrIV 21481 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=18.78;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1573,180,0 chrIV 21510 . A G 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=2.649;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=1.985;QD=17.53;ReadPosRankSum=2.395;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1628,192,0 chrIV 21677 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.94;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1405,162,0 chrIV 21692 . T G 1430 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.63;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1463,171,0 chrIV 21759 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=19.07;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1463,165,0 chrIV 21781 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.33;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1367,156,0 chrIV 21807 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7739;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.64;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1447,168,0 chrIV 21893 . T A 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.945;QD=22.30;ReadPosRankSum=1.614;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1995,219,0 chrIV 21929 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.565;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.005;QD=21.90;ReadPosRankSum=1.697;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2223,261,0 chrIV 21964 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3502;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.07;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2098,237,0 chrIV 22006 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.77;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1753,201,0 chrIV 22049 . G T 1774 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7085;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.93;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1807,204,0 chrIV 22166 . A G 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.197;DP=83;Dels=0.00;FS=8.609;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=0.764;QD=21.57;ReadPosRankSum=3.347;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:4,78:83:99:1823,207,0 chrIV 22206 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.66;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1269,147,0 chrIV 22312 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.44;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1783,204,0 chrIV 22379 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.94;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1503,168,0 chrIV 22481 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.65;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1357,150,0 chrIV 22513 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.331;QD=18.47;ReadPosRankSum=1.682;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,68:72:99:1363,150,0 chrIV 22594 . A G 922 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.21;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:955,108,0 chrIV 22713 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.62;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2217,240,0 chrIV 22728 . T A 1298 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=17.31;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1331,150,0 chrIV 22874 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.58;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1263,141,0 chrIV 22928 . A G 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.676;QD=19.40;ReadPosRankSum=1.676;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1236,141,0 chrIV 23066 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.802;DP=108;Dels=0.00;FS=33.678;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.701;QD=16.00;ReadPosRankSum=4.835;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:9,99:108:99:1761,198,0 chrIV 23143 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.35;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2251,246,0 chrIV 23241 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.33;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1060,111,0 chrIV 23275 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.76;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1034,111,0 chrIV 23305 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.22;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1264,135,0 chrIV 23368 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2055;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.37;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1408,159,0 chrIV 23647 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1095,126,0 chrIV 23797 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1294,147,0 chrIV 24019 . G A 1075 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1108,120,0 chrIV 24553 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=4.063;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.031;QD=22.06;ReadPosRankSum=1.644;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1798,204,0 chrIV 24643 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.76;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1693,192,0 chrIV 24937 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.758;QD=20.35;ReadPosRankSum=1.696;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1987,225,0 chrIV 26268 . T C 785 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:818,96,0 chrIV 26950 . C A 936 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.80;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:99:969,108,0 chrIV 27072 . T C 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=45;Dels=0.00;FS=3.054;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.358;QD=18.64;ReadPosRankSum=2.341;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:99:872,99,0 chrIV 27235 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1261,144,0 chrIV 27384 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.16;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1125,120,0 chrIV 27394 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.68;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:967,111,0 chrIV 27545 . G T 1744 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.65;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1777,201,0 chrIV 27678 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.12;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1216,138,0 chrIV 27879 . G T 1057 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.54;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1090,120,0 chrIV 27904 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.55;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1122,123,0 chrIV 27972 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.82;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1249,141,0 chrIV 28077 . A G 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.248;QD=19.26;ReadPosRankSum=1.485;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:96:842,96,0 chrIV 28308 . T A 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.11;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1179,129,0 chrIV 28458 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.62;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:955,108,0 chrIV 28487 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=7.270;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-0.907;QD=21.03;ReadPosRankSum=2.373;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1379,153,0 chrIV 28530 . A G 705 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=13.30;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:84:738,84,0 chrIV 28537 . T C 718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.707;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-0.898;QD=13.30;ReadPosRankSum=1.668;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:84:751,84,0 chrIV 28566 . A G 489 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=8.73;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:60:522,60,0 chrIV 28570 . C G 358 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=7.02;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:45:391,45,0 chrIV 28578 . C T 391 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=8.15;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:48:424,48,0 chrIV 28639 . T C 572 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.00;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:605,66,0 chrIV 28654 . C T 610 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=14.52;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:643,69,0 chrIV 28656 . T C 568 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=13.52;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:601,69,0 chrIV 28782 . A G 863 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.07;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:896,99,0 chrIV 28853 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.14;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1443,156,0 chrIV 28968 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.10;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1757,195,0 chrIV 28997 . G C 1792 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.27;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1825,210,0 chrIV 29103 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.73;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1400,153,0 chrIV 29152 . T G 1271 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.29;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1304,150,0 chrIV 29654 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.44;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1958,216,0 chrIV 29693 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4326;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.05;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1951,216,0 chrIV 29701 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.97;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1778,204,0 chrIV 30062 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.24;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1457,168,0 chrIV 30086 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.72;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1418,156,0 chrIV 30128 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.94;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1439,159,0 chrIV 30404 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8820;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.39;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1511,162,0 chrIV 31112 . A C 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.395;QD=20.47;ReadPosRankSum=1.672;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1200,141,0 chrIV 31224 . G T 1458 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.09;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1491,162,0 chrIV 31492 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.17;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1496,162,0 chrIV 31511 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.66;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1355,153,0 chrIV 31685 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.7330;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.36;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1352,150,0 chrIV 31730 . A G 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.064;QD=19.11;ReadPosRankSum=1.611;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1122,129,0 chrIV 31833 . G C 1492 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.72;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1525,171,0 chrIV 32273 . C T 1227 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.48;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1260,141,0 chrIV 32409 . T C 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.113;QD=23.35;ReadPosRankSum=1.694;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2205,249,0 chrIV 32904 . T A 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.587;DP=108;Dels=0.00;FS=10.350;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.337;QD=18.56;ReadPosRankSum=2.933;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2037,219,0 chrIV 33027 . G T 1365 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1398,156,0 chrIV 33135 . C G 1151 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4872;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.56;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1184,135,0 chrIV 33253 . A T 1371 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1404,153,0 chrIV 33853 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.12;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:923,102,0 chrIV 33856 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.56;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:894,102,0 chrIV 35807 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.86;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1334,147,0 chrIV 36103 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.43;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1102,126,0 chrIV 36578 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.84;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:97:99:2248,246,0 chrIV 37036 . T G 1442 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.49;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1475,174,0 chrIV 37069 . T C 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.84;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,132,0 chrIV 37123 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=12.91;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:911,102,0 chrIV 37138 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=12.05;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:973,111,0 chrIV 37147 . G A 1028 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=12.39;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1061,117,0 chrIV 37405 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.42;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2118,234,0 chrIV 37486 . A G 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.199;QD=22.57;ReadPosRankSum=1.675;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1410,162,0 chrIV 38179 . G C 1749 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.34;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1782,204,0 chrIV 39048 . C T 511 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.93;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:544,60,0 chrIV 39272 . A G 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=77;Dels=0.00;FS=8.862;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.617;QD=18.30;ReadPosRankSum=2.383;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,72:77:99:1442,165,0 chrIV 39281 . T C 1479 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.21;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1512,171,0 chrIV 39500 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=2.682;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.385;QD=22.89;ReadPosRankSum=2.388;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1864,207,0 chrIV 39908 . A G 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=78;Dels=0.00;FS=2.622;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.496;QD=17.08;ReadPosRankSum=2.386;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1365,153,0 chrIV 39986 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1850,210,0 chrIV 40286 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.94;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1181,138,0 chrIV 40439 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.86;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1347,153,0 chrIV 40469 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.62;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1108,123,0 chrIV 40598 . C T 808 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=15.54;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:841,90,0 chrIV 40666 . G A 617 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.15;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:650,72,0 chrIV 40682 . C T 664 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.44;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:697,75,0 chrIV 40838 . C T 851 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:884,96,0 chrIV 40895 . G A 884 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.89;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:917,99,0 chrIV 40965 . G C 538 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.93;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:571,66,0 chrIV 41242 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.38;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1337,147,0 chrIV 41465 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.2766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.59;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1186,135,0 chrIV 41590 . T C 1011 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1044,120,0 chrIV 41927 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1465,159,0 chrIV 42278 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.75;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2170,240,0 chrIV 42504 . C A 1504 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=72.7725;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.04;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1537,171,0 chrIV 42848 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.12;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2025,222,0 chrIV 42966 . G C 1791 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.68;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1824,207,0 chrIV 43014 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.33;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1939,222,0 chrIV 43335 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.31;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1983,216,0 chrIV 43389 . C A 1531 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7882;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.63;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1564,174,0 chrIV 43482 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.11;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1984,219,0 chrIV 44274 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=2;QD=21.12;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1744,192,0 chrIV 45363 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.56;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1904,216,0 chrIV 46064 . A C 597 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.59;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:630,72,0 chrIV 46068 . G C 633 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.10;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:666,75,0 chrIV 46115 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.55;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:711,81,0 chrIV 46164 . T A 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=3.340;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.127;QD=21.40;ReadPosRankSum=1.648;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:932,105,0 chrIV 46179 . T G 1062 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.67;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1095,126,0 chrIV 46292 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.96;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1955,216,0 chrIV 46322 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.47;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1426,153,0 chrIV 46397 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.72;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:924,108,0 chrIV 46818 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1174,132,0 chrIV 47243 . T C 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.074;QD=21.08;ReadPosRankSum=1.697;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2162,243,0 chrIV 47365 . T C 699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=2.965;HaplotypeScore=8.6882;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.930;QD=15.89;ReadPosRankSum=2.226;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:84:732,84,0 chrIV 47489 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1613,177,0 chrIV 47663 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6451;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.14;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:79:99:1624,177,0 chrIV 48046 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.643;QD=19.93;ReadPosRankSum=1.699;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2165,246,0 chrIV 48065 . G A 2800 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.67;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2833,321,0 chrIV 48241 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.58;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2449,276,0 chrIV 48267 . G T 2379 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.83;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2412,258,0 chrIV 48349 . G A 2906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.677;QD=23.06;ReadPosRankSum=0.346;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2939,303,0 chrIV 49100 . A G 1017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.699;QD=17.24;ReadPosRankSum=0.942;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1050,117,0 chrIV 49108 . C T 990 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.07;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1023,114,0 chrIV 49497 . T A 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.029;DP=70;Dels=0.00;FS=4.075;HaplotypeScore=3.7278;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.176;QD=20.89;ReadPosRankSum=0.075;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1495,171,0 chrIV 49584 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.21;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1165,126,0 chrIV 49598 . T G 934 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.62;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:967,111,0 chrIV 49656 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.57;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1519,162,0 chrIV 49679 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.30;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1596,174,0 chrIV 49687 . C G 1517 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.96;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1550,174,0 chrIV 49834 . G C 1867 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.46;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1900,216,0 chrIV 49859 . T G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.760;QD=21.00;ReadPosRankSum=1.690;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1776,198,0 chrIV 50110 . C G 1295 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.23;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1328,147,0 chrIV 50358 . C T 1116 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=14.31;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1149,123,0 chrIV 50360 . A G 1056 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=14.47;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1089,123,0 chrIV 50365 . C T 960 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=13.15;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:993,108,0 chrIV 50502 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.49;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1590,174,0 chrIV 50523 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.46;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1360,156,0 chrIV 50545 . T G 1234 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.45;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1267,141,0 chrIV 50776 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.46;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1434,162,0 chrIV 50793 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1231,141,0 chrIV 51234 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.96;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1794,201,0 chrIV 51859 . T C 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.609;QD=21.34;ReadPosRankSum=1.685;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1612,186,0 chrIV 51967 . A G 2212 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.69;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2245,255,0 chrIV 51985 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.21;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2112,240,0 chrIV 52093 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4039;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.19;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1338,150,0 chrIV 52556 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1678,189,0 chrIV 52930 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.14;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1557,180,0 chrIV 53011 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.42;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2282,258,0 chrIV 53077 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8956;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.48;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2361,279,0 chrIV 53471 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1205,132,0 chrIV 53890 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.32;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1099,123,0 chrIV 53965 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:957,105,0 chrIV 54127 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:674,75,0 chrIV 54379 . A G 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.844;DP=49;Dels=0.00;FS=9.369;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.379;QD=20.10;ReadPosRankSum=2.350;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1018,117,0 chrIV 54490 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1327,144,0 chrIV 54946 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.047;QD=19.42;ReadPosRankSum=1.580;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1800,204,0 chrIV 55070 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1754,192,0 chrIV 55588 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1588,174,0 chrIV 56076 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.40;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1615,183,0 chrIV 56155 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5016;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.32;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1366,156,0 chrIV 56904 . A G 1229 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1262,144,0 chrIV 56921 . A G 1090 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1123,132,0 chrIV 56944 . T C 971 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=16.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1004,114,0 chrIV 56962 . T A 931 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:964,105,0 chrIV 56967 . G A 813 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:93:846,93,0 chrIV 57011 . T C 145.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:21:178,21,0 chrIV 57149 . G A 595 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.59;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:628,69,0 chrIV 57157 . T G 574 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.11;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:69:607,69,0 chrIV 57193 . A G 447 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=12.42;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,34:36:57:480,57,0 chrIV 57234 . G C 518 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.19;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:63:551,63,0 chrIV 57243 . G A 697 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.36;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:78:730,78,0 chrIV 57334 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.54;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1420,165,0 chrIV 57370 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.01;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1744,186,0 chrIV 57391 . G T 1461 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.26;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1494,165,0 chrIV 57502 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.933;QD=19.42;ReadPosRankSum=1.679;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1295,144,0 chrIV 57805 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=15.47;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1085,120,0 chrIV 57851 . T G 1794 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.42;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1827,210,0 chrIV 58368 . C A 2355 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.55;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2388,264,0 chrIV 58891 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.247;QD=18.38;ReadPosRankSum=1.552;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1448,165,0 chrIV 59062 . T A 868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=5.528;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=0.208;QD=17.36;ReadPosRankSum=1.663;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:901,99,0 chrIV 59068 . T C 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=58;Dels=0.00;FS=7.999;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-0.542;QD=12.97;ReadPosRankSum=2.364;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:2,55:58:90:785,90,0 chrIV 59114 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.25;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1546,168,0 chrIV 59321 . T A 1685 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.88;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1718,183,0 chrIV 59368 . A G 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=5.552;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.425;QD=17.09;ReadPosRankSum=1.601;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1383,156,0 chrIV 59782 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=141;Dels=0.00;FS=13.423;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.535;QD=19.13;ReadPosRankSum=3.370;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:4,136:141:99:2731,318,0 chrIV 59797 . G A 2854 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.28;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2887,321,0 chrIV 59868 . T C 2191 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9186;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=17.53;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2224,255,0 chrIV 59896 . T A 2134 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.93;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2167,243,0 chrIV 59922 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=17.54;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1997,225,0 chrIV 60081 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.79;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1912,213,0 chrIV 60151 . A G 1348 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=14.98;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1381,153,0 chrIV 60239 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4822;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.80;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1067,123,0 chrIV 60721 . A T 511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.271;QD=17.03;ReadPosRankSum=-1.386;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:40:544,40,0 chrIV 61039 . T C 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.417;QD=18.47;ReadPosRankSum=1.669;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1049,123,0 chrIV 61127 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.803;QD=19.90;ReadPosRankSum=-0.253;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1665,168,0 chrIV 61190 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.4998;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.04;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1461,165,0 chrIV 61275 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.4075;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.59;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2059,228,0 chrIV 62726 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.87;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1266,150,0 chrIV 62804 . A G 1236 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=14.37;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1269,144,0 chrIV 63191 . G T 1421 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=16.52;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1454,162,0 chrIV 63216 . A G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.387;QD=17.16;ReadPosRankSum=2.393;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1509,171,0 chrIV 63385 . C G 2377 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.30;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2410,267,0 chrIV 63504 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.46;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1707,183,0 chrIV 63653 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=15.76;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1499,171,0 chrIV 63704 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.66;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1516,162,0 chrIV 63839 . G C 1664 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=15.27;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1697,192,0 chrIV 63846 . C A 1463 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=14.34;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1496,162,0 chrIV 64139 . T A 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=8.543;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.665;QD=20.29;ReadPosRankSum=1.029;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1372,147,0 chrIV 64151 . T C 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=4.472;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.445;QD=18.06;ReadPosRankSum=1.683;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1315,147,0 chrIV 64505 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.34;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1348,147,0 chrIV 65233 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.93;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1289,144,0 chrIV 65250 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=17.24;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:66:99:1171,135,0 chrIV 65350 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=18.25;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1183,135,0 chrIV 65456 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2201,243,0 chrIV 65570 . C A 1158 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.44;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1191,129,0 chrIV 65858 . T C 952 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:985,114,0 chrIV 66230 . T C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=72;Dels=0.00;FS=2.983;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.992;QD=21.60;ReadPosRankSum=2.380;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,68:72:99:1588,180,0 chrIV 66345 . G C 2160 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2193,249,0 chrIV 66478 . T C 1755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.283;QD=17.38;ReadPosRankSum=1.661;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,97:101:99:1788,207,0 chrIV 66552 . G T 3491.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7306;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=23.59;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3491,384,0 chrIV 66946 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.6949;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.08;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2546,276,0 chrIV 66948 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=16.91;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2349,270,0 chrIV 67196 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.64;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1705,183,0 chrIV 67529 . A C 885 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.41;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:918,102,0 chrIV 67659 . T C 577 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=24.04;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:72:610,72,0 chrIV 67697 . G A 552 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.40;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:69:585,69,0 chrIV 67718 . A G 368 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.44;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:401,45,0 chrIV 67805 . A C 124.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:157,18,0 chrIV 67840 . T C 149.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=10.65;SB=-5.207e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:182,21,0 chrIV 67845 . G C 149.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=17;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-1.735;QD=8.77;ReadPosRankSum=1.085;SB=-2.007e+01 GT:AD:DP:GQ:PL 1/1:1,15:17:21:182,21,0 chrIV 68082 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.35;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1317,144,0 chrIV 68235 . A G 2089 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.96;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2122,240,0 chrIV 68451 . T C 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.613;QD=20.31;ReadPosRankSum=1.673;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1211,138,0 chrIV 68677 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9719;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.15;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1884,213,0 chrIV 68840 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.02;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1094,123,0 chrIV 69486 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.29;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2212,252,0 chrIV 69990 . A G 2628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=138;Dels=0.00;FS=9.917;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.204;QD=19.04;ReadPosRankSum=2.949;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:3,135:138:99:2661,306,0 chrIV 70242 . A T 1797 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.72;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1830,201,0 chrIV 70900 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.12;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1790,192,0 chrIV 71126 . G C 1516 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.95;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1549,180,0 chrIV 71168 . T G 1735 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.65;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1768,198,0 chrIV 71207 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.79;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1830,207,0 chrIV 71523 . T G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.988;DP=80;Dels=0.00;FS=6.299;HaplotypeScore=5.1610;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.539;QD=20.55;ReadPosRankSum=2.388;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1677,172,0 chrIV 71645 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.60;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,183,0 chrIV 72290 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.21;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1397,159,0 chrIV 72338 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.48;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1558,174,0 chrIV 72373 . G A 1760 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1793,198,0 chrIV 72485 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.10;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1978,216,0 chrIV 72869 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=15.97;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1438,159,0 chrIV 72872 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.265;QD=15.25;ReadPosRankSum=1.610;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1360,150,0 chrIV 72956 . T C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.895;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.094;QD=20.19;ReadPosRankSum=1.641;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1588,180,0 chrIV 73193 . C A 1827 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.8668;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.64;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1860,210,0 chrIV 73470 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.02;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1650,177,0 chrIV 74428 . A G 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=11.3425;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.499;QD=21.17;ReadPosRankSum=1.703;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2552,285,0 chrIV 74731 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.95;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2427,264,0 chrIV 75082 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.57;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1501,168,0 chrIV 75301 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.37;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2314,255,0 chrIV 75517 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.57;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2152,240,0 chrIV 75904 . A T 2554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=128;Dels=0.00;FS=2.809;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.470;QD=19.95;ReadPosRankSum=2.334;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2587,285,0 chrIV 76252 . T A 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=140;Dels=0.00;FS=4.497;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.904;QD=21.91;ReadPosRankSum=0.879;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3101,348,0 chrIV 76353 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.58;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1538,168,0 chrIV 76415 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.65;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1198,138,0 chrIV 76974 . A G 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=70;Dels=0.00;FS=8.584;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.091;QD=22.20;ReadPosRankSum=2.379;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1587,177,0 chrIV 77029 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1394,159,0 chrIV 77295 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=5.521;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.760;QD=21.36;ReadPosRankSum=1.690;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1827,210,0 chrIV 77418 . T C 615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=6.591;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.527;QD=15.37;ReadPosRankSum=2.327;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:75:648,75,0 chrIV 77814 . A G 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.039;QD=16.20;ReadPosRankSum=1.675;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1005,117,0 chrIV 78173 . C T 632 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=15.41;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:665,75,0 chrIV 78578 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.38;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1669,189,0 chrIV 78587 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.28;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1678,183,0 chrIV 78590 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.64;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1497,171,0 chrIV 78945 . C G 1227 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.11;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1260,144,0 chrIV 79753 . T C 2371 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.98;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2404,270,0 chrIV 80089 . G A 2346 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.39;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2379,273,0 chrIV 80213 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.28;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2020,225,0 chrIV 80221 . T G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-1.594;QD=17.67;ReadPosRankSum=2.398;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1712,195,0 chrIV 80263 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.26;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1978,222,0 chrIV 80374 . T C 1282 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.9298;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=15.26;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1315,153,0 chrIV 80414 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=15.93;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1339,144,0 chrIV 80429 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;MQRankSum=-1.356;QD=14.60;ReadPosRankSum=1.694;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1376,150,0 chrIV 80445 . A T 1381 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;MQRankSum=-1.696;QD=14.24;ReadPosRankSum=1.696;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1414,153,0 chrIV 80448 . C T 1331 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=13.86;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1364,144,0 chrIV 80454 . G C 1311 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=13.24;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1344,150,0 chrIV 80483 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=14.38;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1385,156,0 chrIV 80509 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.92;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1610,177,0 chrIV 80612 . A G 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8782;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.304;QD=18.69;ReadPosRankSum=1.696;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1865,213,0 chrIV 80653 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=68.6886;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.19;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1425,162,0 chrIV 80742 . C A 1485 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.84;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1518,165,0 chrIV 81776 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1362,156,0 chrIV 81868 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.47;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2370,270,0 chrIV 82754 . A T 2357 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.05;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2390,258,0 chrIV 82818 . A G 2518 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.75;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2551,285,0 chrIV 82949 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.356;QD=22.58;ReadPosRankSum=1.657;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2110,237,0 chrIV 82974 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.80;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1951,225,0 chrIV 83019 . T C 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=106;Dels=0.00;FS=10.474;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.705;QD=20.80;ReadPosRankSum=2.839;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2238,255,0 chrIV 83045 . C A 2465 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.61;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2498,276,0 chrIV 83205 . A T 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-1.899;QD=18.28;ReadPosRankSum=2.392;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1587,168,0 chrIV 83209 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.80;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1546,174,0 chrIV 83241 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.62;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1579,180,0 chrIV 83262 . G T 1952 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.42;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1985,216,0 chrIV 83327 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.37;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2213,246,0 chrIV 83501 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.93;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1184,129,0 chrIV 83514 . T C 886 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.46;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:919,105,0 chrIV 84159 . T C 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=122;Dels=0.00;FS=4.845;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.121;QD=19.36;ReadPosRankSum=1.674;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2395,267,0 chrIV 84392 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.317;QD=20.57;ReadPosRankSum=1.635;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1514,171,0 chrIV 85442 . T C 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=4.412;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.374;QD=19.56;ReadPosRankSum=1.673;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1187,135,0 chrIV 85895 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.15;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:66:599,66,0 chrIV 86088 . C G 435 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:57:468,57,0 chrIV 86111 . C A 441 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.05;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:54:474,54,0 chrIV 86164 . T C 332 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=14.43;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:365,42,0 chrIV 86165 . T G 301 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=13.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:334,39,0 chrIV 86389 . C A 1213 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.28;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1246,135,0 chrIV 86400 . G C 1072 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.81;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1105,126,0 chrIV 86416 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.92;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1248,141,0 chrIV 86660 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.020;QD=21.06;ReadPosRankSum=1.691;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1823,207,0 chrIV 86774 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.55;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2047,228,0 chrIV 87149 . A G 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.564;QD=20.99;ReadPosRankSum=1.693;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1943,225,0 chrIV 87227 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.02;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1565,168,0 chrIV 87312 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2608;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.49;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2369,255,0 chrIV 87458 . T C 2041 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.95;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2074,237,0 chrIV 87483 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8559;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.17;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2350,255,0 chrIV 88023 . A T 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=69;Dels=0.00;FS=7.956;HaplotypeScore=10.0518;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.962;QD=14.78;ReadPosRankSum=3.016;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:6,63:69:99:1053,135,0 chrIV 88024 . T A 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.463;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=10.8404;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.499;QD=14.71;ReadPosRankSum=2.046;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1063,115,0 chrIV 88301 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.57;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1447,165,0 chrIV 88441 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.47;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1718,186,0 chrIV 88587 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.34;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1592,177,0 chrIV 88907 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.19;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1204,132,0 chrIV 89546 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=19.79;ReadPosRankSum=1.696;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1953,222,0 chrIV 89588 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2057,228,0 chrIV 89840 . G C 1309 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.54;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1342,153,0 chrIV 90257 . A C 2357 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.11;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2390,270,0 chrIV 90638 . A C 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.5909;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.399;QD=16.13;ReadPosRankSum=1.699;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,103:108:99:1775,201,0 chrIV 91318 . T C 668 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.87;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:701,81,0 chrIV 91537 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=20.56;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1164,129,0 chrIV 92275 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=8.274;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.408;QD=20.27;ReadPosRankSum=2.219;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1330,150,0 chrIV 92350 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.71;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1146,126,0 chrIV 94394 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.58;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1926,219,0 chrIV 94546 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2423;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.93;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2272,252,0 chrIV 94727 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.44;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1748,189,0 chrIV 94820 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.56;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1388,162,0 chrIV 96088 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.095;QD=22.82;ReadPosRankSum=2.381;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1653,186,0 chrIV 96121 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.27;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1732,195,0 chrIV 96217 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.49;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1585,183,0 chrIV 96268 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.02;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1336,147,0 chrIV 96295 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.05;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1196,132,0 chrIV 96663 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.92;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1633,174,0 chrIV 97262 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6828;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.76;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1403,150,0 chrIV 97292 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.51;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1407,156,0 chrIV 97444 . T C 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.610;QD=21.36;ReadPosRankSum=1.691;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1849,210,0 chrIV 97564 . C T 2600 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.2220;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.47;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2633,285,0 chrIV 98112 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1405,156,0 chrIV 98231 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.63;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1201,135,0 chrIV 98262 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.03;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1475,159,0 chrIV 98290 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.35;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1888,207,0 chrIV 98411 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1613,174,0 chrIV 98567 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.51;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1541,180,0 chrIV 99505 . T G 889 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.76;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:922,108,0 chrIV 100865 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.7132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2307,264,0 chrIV 101326 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.49;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1488,165,0 chrIV 101419 . T A 1587 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.05;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1620,171,0 chrIV 102617 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.37;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2384,264,0 chrIV 102955 . C T 2458 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.95;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2491,282,0 chrIV 102979 . A T 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.050;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.326;QD=22.05;ReadPosRankSum=1.701;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2481,273,0 chrIV 103006 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.96;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1889,210,0 chrIV 103054 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.795;QD=18.05;ReadPosRankSum=1.651;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1567,180,0 chrIV 103171 . T C 1790 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.90;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1823,210,0 chrIV 103456 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=74;Dels=0.00;FS=2.835;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.828;QD=19.72;ReadPosRankSum=2.382;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1492,168,0 chrIV 103509 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1569;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.94;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2253,255,0 chrIV 104927 . A C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=72;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.683;QD=19.31;ReadPosRankSum=1.683;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,69:72:99:1423,162,0 chrIV 105048 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.1505;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.525;QD=18.63;ReadPosRankSum=1.577;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1281,144,0 chrIV 105197 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.84;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1521,174,0 chrIV 105260 . T C 996 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=15.56;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1029,117,0 chrIV 105348 . C G 1085 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.27;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1118,129,0 chrIV 105877 . A C 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.641;QD=19.73;ReadPosRankSum=1.685;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1473,165,0 chrIV 105898 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.13;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1702,192,0 chrIV 105955 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.90;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1337,150,0 chrIV 105958 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.75;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1289,144,0 chrIV 106143 . C A 1757 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.43;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1790,189,0 chrIV 106727 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.46;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1842,210,0 chrIV 106840 . T G 1717 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.97;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1750,204,0 chrIV 106899 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=40.9581;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.33;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1408,153,0 chrIV 107438 . T C 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;DP=113;Dels=0.00;FS=2.968;HaplotypeScore=16.7179;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.637;QD=21.40;ReadPosRankSum=2.224;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,108:113:99:2451,279,0 chrIV 107513 . C A 2347 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.5494;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.59;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2380,264,0 chrIV 108371 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.61;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1168,129,0 chrIV 108611 . C T 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.287;QD=21.17;ReadPosRankSum=1.039;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1515,148,0 chrIV 108917 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.97;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1648,180,0 chrIV 109279 . G A 748 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.00;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:84:781,84,0 chrIV 109468 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1594,174,0 chrIV 109836 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=103;Dels=0.00;FS=9.162;HaplotypeScore=11.3317;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.753;QD=17.19;ReadPosRankSum=2.892;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:3,99:103:99:1804,207,0 chrIV 110285 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.65;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2159,234,0 chrIV 111192 . A G 1461 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1494,168,0 chrIV 111349 . A G 669 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:81:702,81,0 chrIV 111373 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.83;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:887,96,0 chrIV 111716 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.42;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1340,147,0 chrIV 112122 . C T 2421 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6140;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.84;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2454,270,0 chrIV 112560 . A G 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.624;DP=94;Dels=0.00;FS=2.414;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.151;QD=16.67;ReadPosRankSum=2.861;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1600,183,0 chrIV 113136 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.10;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1155,135,0 chrIV 113151 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.25;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1258,141,0 chrIV 113730 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.52;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1770,201,0 chrIV 115568 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.03;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1337,150,0 chrIV 115628 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.84;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:843,96,0 chrIV 115646 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.53;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1256,135,0 chrIV 115987 . G C 1430 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.72;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1463,162,0 chrIV 116482 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.78;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1732,195,0 chrIV 116761 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=6.921;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.384;QD=17.67;ReadPosRankSum=2.348;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1747,201,0 chrIV 116794 . G A 2262 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.34;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2295,255,0 chrIV 117306 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2007,231,0 chrIV 117842 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.08;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1570,177,0 chrIV 117891 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.65;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:779,87,0 chrIV 118055 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=24.01;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1738,189,0 chrIV 118543 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.1585;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.39;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2019,234,0 chrIV 119967 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1299,144,0 chrIV 120963 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.76;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1901,216,0 chrIV 120999 . A G 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.452;QD=22.11;ReadPosRankSum=1.697;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2222,264,0 chrIV 121089 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.50;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2333,261,0 chrIV 121098 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.72;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2084,240,0 chrIV 121469 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.19;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1530,165,0 chrIV 121593 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.9781;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.60;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1465,168,0 chrIV 121624 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.24;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1562,177,0 chrIV 121990 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.42;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1168,129,0 chrIV 122142 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=2.932;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.737;QD=20.98;ReadPosRankSum=2.355;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1124,126,0 chrIV 122163 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.25;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1451,159,0 chrIV 122524 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.45;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1306,147,0 chrIV 122546 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.43;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1364,153,0 chrIV 122569 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.60;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1494,168,0 chrIV 122596 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.37;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1457,162,0 chrIV 122629 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.00;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1485,162,0 chrIV 122656 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.37;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1550,177,0 chrIV 122724 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0739;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.38;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1797,198,0 chrIV 123745 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1403,159,0 chrIV 124321 . C T 3202 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=23.04;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3235,360,0 chrIV 124630 . A G 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DP=93;Dels=0.00;FS=3.908;HaplotypeScore=4.5712;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=1;MQRankSum=-1.161;QD=18.63;ReadPosRankSum=1.047;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1766,185,0 chrIV 124666 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=1;QD=18.04;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1819,198,0 chrIV 125130 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.93;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1239,141,0 chrIV 125665 . C G 2059 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6034;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.45;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2092,237,0 chrIV 129270 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=23.01;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2311,246,0 chrIV 130517 . G T 1566 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.60;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1599,174,0 chrIV 130640 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1138,126,0 chrIV 130711 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.77;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1009,111,0 chrIV 130869 . C A 1267 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.11;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1300,141,0 chrIV 130967 . C A 1139 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.71;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1172,129,0 chrIV 131084 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1040,117,0 chrIV 131453 . T A 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.767;QD=22.98;ReadPosRankSum=1.675;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1435,156,0 chrIV 131512 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.94;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1369,156,0 chrIV 131684 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.22;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2011,228,0 chrIV 131840 . T A 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=81;Dels=0.00;FS=5.340;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.142;QD=21.07;ReadPosRankSum=3.346;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1740,189,0 chrIV 132192 . G C 1303 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.74;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1336,150,0 chrIV 132259 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.78;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1325,144,0 chrIV 132488 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.00;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:913,99,0 chrIV 132541 . T C 1086 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.11;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1119,129,0 chrIV 132560 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.10;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1213,138,0 chrIV 133432 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.00;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1713,189,0 chrIV 134099 . T C 2325 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1765;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=3;QD=20.58;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2358,273,0 chrIV 134327 . C A 2502 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.3111;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=25;QD=18.00;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:15,124:139:99:2535,285,0 chrIV 134634 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=18.1397;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.14;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2409,264,0 chrIV 134733 . A C 2710 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=15.76;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,169:172:99:2743,306,0 chrIV 134782 . C T 3338.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.04;SB=-1.866e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3338,378,0 chrIV 136414 . C G 1911 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4111;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.59;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1944,216,0 chrIV 136516 . C G 2937 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.2006;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.71;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2970,333,0 chrIV 136912 . C T 2794 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.33;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2827,303,0 chrIV 136940 . A G 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6598;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.659;QD=19.11;ReadPosRankSum=1.683;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2746,309,0 chrIV 137047 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.87;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1749,198,0 chrIV 137238 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.68;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1811,201,0 chrIV 137290 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.11;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1391,159,0 chrIV 137294 . A T 1179 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.31;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1212,138,0 chrIV 137704 . T C 410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-0.311;QD=10.51;ReadPosRankSum=1.466;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:51:443,51,0 chrIV 137705 . T A 411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-0.933;QD=10.27;ReadPosRankSum=1.644;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:51:444,51,0 chrIV 137858 . T A 171.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=14.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:24:204,24,0 chrIV 137927 . T A 677 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.30;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:710,81,0 chrIV 138410 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.51;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1489,174,0 chrIV 139681 . C A 1125 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.86;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1158,132,0 chrIV 140427 . G A 2731 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.60;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2764,294,0 chrIV 140808 . T C 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.225;QD=21.22;ReadPosRankSum=1.700;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2325,264,0 chrIV 140835 . A C 2077 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.6194;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.59;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2110,243,0 chrIV 140862 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.67;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1994,222,0 chrIV 140910 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.76;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1340,153,0 chrIV 142603 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.09;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1806,201,0 chrIV 142657 . A G 1922 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.61;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1955,222,0 chrIV 142744 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.201;QD=16.23;ReadPosRankSum=1.692;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1429,168,0 chrIV 142756 . A G 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-1.074;QD=13.77;ReadPosRankSum=1.688;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1121,126,0 chrIV 142762 . A G 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-0.832;QD=13.23;ReadPosRankSum=1.687;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1052,123,0 chrIV 142768 . G T 1197 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.60;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1230,135,0 chrIV 142826 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=14.88;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1804,204,0 chrIV 142849 . C A 1994 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.21;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2027,225,0 chrIV 143626 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.81;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1698,189,0 chrIV 143740 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=16.02;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1058,114,0 chrIV 143752 . A G 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6794;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=-0.822;QD=14.62;ReadPosRankSum=2.796;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1115,126,0 chrIV 143764 . A G 1201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0415;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.364;QD=14.47;ReadPosRankSum=1.647;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1234,144,0 chrIV 143902 . C G 2441 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.7205;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.17;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2474,288,0 chrIV 144468 . G T 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.160;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.088;QD=21.94;ReadPosRankSum=1.410;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1942,210,0 chrIV 144796 . G T 2102 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.10;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2135,228,0 chrIV 145132 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.83;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2249,246,0 chrIV 145686 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=118;Dels=0.00;FS=7.715;HaplotypeScore=5.6081;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.040;QD=15.25;ReadPosRankSum=3.099;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:5,113:118:99:1833,207,0 chrIV 145687 . T G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.147;DP=116;Dels=0.00;FS=6.472;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.930;QD=12.94;ReadPosRankSum=4.392;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:7,108:116:99:1534,177,0 chrIV 145710 . T A 2300 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.9551;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=15.97;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2333,258,0 chrIV 145805 . T G 2347 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.95;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2380,267,0 chrIV 146159 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.16;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2275,249,0 chrIV 146231 . T A 2124 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.62;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2157,237,0 chrIV 146398 . G C 2099 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7066;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.18;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2132,243,0 chrIV 146675 . A C 1850 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.2935;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.88;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1883,213,0 chrIV 146729 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.454;QD=20.02;ReadPosRankSum=1.698;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2095,243,0 chrIV 147362 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.33;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1518,162,0 chrIV 147374 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.27;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1476,168,0 chrIV 147377 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.29;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1399,159,0 chrIV 147986 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.18;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1524,174,0 chrIV 148010 . T G 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.128;QD=17.91;ReadPosRankSum=1.692;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1573,180,0 chrIV 148274 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.27;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1553,180,0 chrIV 148986 . T C 875 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=13.67;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:64:99:908,105,0 chrIV 149500 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.86;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2110,240,0 chrIV 149608 . G A 3163 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3196,366,0 chrIV 149689 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.8829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2041,231,0 chrIV 150172 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.69;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2040,240,0 chrIV 150223 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.73;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2065,237,0 chrIV 150307 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.30;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2467,282,0 chrIV 150382 . G C 2282 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2315,264,0 chrIV 150486 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.99;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2616,285,0 chrIV 150493 . C T 2486 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4190;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.42;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2519,273,0 chrIV 150567 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.42;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2014,228,0 chrIV 150634 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.24;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1326,144,0 chrIV 150745 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3806;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.17;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1707,183,0 chrIV 150838 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.74;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1682,192,0 chrIV 151239 . G A 2589 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.61;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2622,285,0 chrIV 151696 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7417;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.39;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1836,210,0 chrIV 151765 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2183,237,0 chrIV 151864 . G T 1212 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=17.07;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1245,138,0 chrIV 152053 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.97;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2713,318,0 chrIV 152269 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2393;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2113,237,0 chrIV 152617 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.62;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1969,225,0 chrIV 153267 . G A 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.389;QD=22.41;ReadPosRankSum=-0.247;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2229,222,0 chrIV 153691 . G A 3115 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.90;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3148,333,0 chrIV 153712 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.51;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2882,327,0 chrIV 153772 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.70;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2426,273,0 chrIV 154012 . C G 1297 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=13.80;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1330,150,0 chrIV 154972 . C A 1449 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.70;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1482,162,0 chrIV 155089 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.11;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1722,195,0 chrIV 155368 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.88;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2002,231,0 chrIV 155593 . G A 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;DP=84;Dels=0.00;FS=5.966;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.601;QD=16.15;ReadPosRankSum=-0.855;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1390,133,0 chrIV 155900 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.48;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1966,222,0 chrIV 155983 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.91;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2484,267,0 chrIV 156155 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.00;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1413,159,0 chrIV 156317 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.061;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.139;QD=21.53;ReadPosRankSum=1.692;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1928,219,0 chrIV 156443 . T C 1753 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.92;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1786,201,0 chrIV 156470 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.12;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1792,207,0 chrIV 156477 . C G 1674 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.81;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1707,189,0 chrIV 156591 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1481,168,0 chrIV 157148 . T C 1727 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.62;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1760,201,0 chrIV 157205 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.88;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1743,195,0 chrIV 157220 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5504;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.47;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1640,177,0 chrIV 157232 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8499;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=15.88;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1526,177,0 chrIV 157235 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.32;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1518,168,0 chrIV 157424 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.33;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1038,120,0 chrIV 158137 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.07;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1429,153,0 chrIV 158169 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.23;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1100,123,0 chrIV 158415 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.33;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1714,183,0 chrIV 158418 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=15.69;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1539,174,0 chrIV 158474 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.675;DP=88;Dels=0.00;FS=11.603;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.064;QD=14.07;ReadPosRankSum=3.730;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:5,82:88:99:1271,144,0 chrIV 158505 . T A 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.161;QD=17.85;ReadPosRankSum=1.804;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1532,165,0 chrIV 158510 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=91;Dels=0.00;FS=5.611;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.189;QD=14.49;ReadPosRankSum=2.834;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1352,153,0 chrIV 158559 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2932;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.72;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2261,249,0 chrIV 159238 . C A 2168 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.07;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2201,246,0 chrIV 159255 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.91;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2044,228,0 chrIV 159284 . A C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=105;Dels=0.00;FS=3.399;HaplotypeScore=9.0948;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.346;QD=18.31;ReadPosRankSum=1.699;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1956,209,0 chrIV 159343 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.53;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2004,222,0 chrIV 159513 . T C 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.181;QD=21.43;ReadPosRankSum=1.693;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1940,225,0 chrIV 159602 . C G 2278 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.81;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2311,270,0 chrIV 159777 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.61;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1740,186,0 chrIV 159954 . T C 3044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;DP=146;Dels=0.00;FS=16.821;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.767;QD=20.85;ReadPosRankSum=3.386;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:4,141:146:99:3077,345,0 chrIV 160362 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1679,189,0 chrIV 160644 . C G 665 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.56;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:698,81,0 chrIV 160731 . A G 580 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.06;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:613,69,0 chrIV 160777 . A G 582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.868;QD=17.12;ReadPosRankSum=2.150;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:2,31:34:69:615,69,0 chrIV 161006 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.05;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1554,177,0 chrIV 161007 . T C 1510 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.23;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1543,174,0 chrIV 161220 . A G 800 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.00;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:833,96,0 chrIV 161421 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.4740;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.81;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1932,219,0 chrIV 161524 . A T 1624 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=13.8271;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=21.37;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1657,180,0 chrIV 162396 . T A 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.395;QD=23.24;ReadPosRankSum=1.636;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1706,189,0 chrIV 162718 . A T 1883 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.44;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1916,207,0 chrIV 162728 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=117;Dels=0.00;FS=7.574;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.742;QD=16.32;ReadPosRankSum=3.940;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:6,108:117:99:1942,219,0 chrIV 162819 . T C 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.329;QD=19.32;ReadPosRankSum=1.557;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1559,180,0 chrIV 163031 . T C 2495 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.12;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2528,285,0 chrIV 163327 . C A 3099 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.94;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3132,360,0 chrIV 163443 . G C 2966 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=23.35;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2999,348,0 chrIV 163644 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.94;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2457,282,0 chrIV 163695 . A G 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.618;QD=19.35;ReadPosRankSum=1.646;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2374,264,0 chrIV 163809 . A G 2550 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.0754;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.23;SB=-1.715e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2583,294,0 chrIV 163842 . C A 2531 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=18.34;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2564,279,0 chrIV 163851 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=15.14;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2440,270,0 chrIV 163869 . C T 2481 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=16.32;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2514,279,0 chrIV 163896 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=14.90;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1866,204,0 chrIV 163902 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=14.00;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1811,198,0 chrIV 163967 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.56;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1815,207,0 chrIV 164115 . G T 2993 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.53;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3026,330,0 chrIV 165265 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.68;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1359,156,0 chrIV 165386 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.62;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1047,117,0 chrIV 166025 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.99;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1932,216,0 chrIV 166418 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1962,225,0 chrIV 166634 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.44;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1648,186,0 chrIV 167025 . T C 1188 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.56;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1221,135,0 chrIV 167266 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0735;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.71;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2072,237,0 chrIV 167295 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.23;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1813,195,0 chrIV 167334 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.11;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1742,189,0 chrIV 168058 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=15.62;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1845,213,0 chrIV 169230 . G T 1729 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.35;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1762,189,0 chrIV 169821 . T A 306 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.57;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:339,42,0 chrIV 170917 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.4132;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.29;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1422,159,0 chrIV 171817 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1797,213,0 chrIV 172151 . A T 2433 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.74;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2466,279,0 chrIV 172218 . T C 1882 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.88;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1915,219,0 chrIV 172966 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.61;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1495,171,0 chrIV 173236 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.58;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,103:109:99:2058,237,0 chrIV 173380 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.17;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1303,144,0 chrIV 174185 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.17;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1344,147,0 chrIV 174638 . T C 1250 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1283,144,0 chrIV 174755 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.96;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:983,114,0 chrIV 175163 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.85;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1183,138,0 chrIV 175406 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.19;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1320,147,0 chrIV 175946 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.08;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1593,180,0 chrIV 176019 . A G 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.825;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.127;QD=22.87;ReadPosRankSum=1.690;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1908,219,0 chrIV 176051 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.687;QD=23.64;ReadPosRankSum=1.641;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1830,207,0 chrIV 176273 . C T 2012 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.53;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2045,228,0 chrIV 176423 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.23;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1429,162,0 chrIV 176496 . A G 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.622;QD=16.60;ReadPosRankSum=1.622;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1079,123,0 chrIV 176519 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.32;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1370,150,0 chrIV 176628 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.62;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1352,150,0 chrIV 176758 . C A 1755 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1788,204,0 chrIV 177160 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=10.249;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.968;QD=18.43;ReadPosRankSum=2.330;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1931,222,0 chrIV 177303 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.60;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2296,246,0 chrIV 177756 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.06;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1691,189,0 chrIV 177780 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.80;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1736,198,0 chrIV 177807 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.78;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1930,213,0 chrIV 178221 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.58;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1781,201,0 chrIV 178389 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4017;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.30;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1951,210,0 chrIV 178580 . A C 2056 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.42;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2089,240,0 chrIV 179632 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.1889;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.89;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1412,156,0 chrIV 179818 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.4141;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.983;QD=20.92;ReadPosRankSum=1.685;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1581,180,0 chrIV 180644 . A C 2579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=131;Dels=0.00;FS=4.437;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.427;QD=19.69;ReadPosRankSum=1.261;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,124:131:99:2612,297,0 chrIV 180689 . C A 2316 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.71;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2349,258,0 chrIV 181988 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.91;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1697,183,0 chrIV 182019 . G C 1528 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.10;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1561,177,0 chrIV 182065 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.38;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1370,159,0 chrIV 182104 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1322,150,0 chrIV 182859 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.71;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1698,186,0 chrIV 183726 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.42;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1617,183,0 chrIV 183759 . G T 1948 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.87;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1981,222,0 chrIV 183975 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.06;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1607,180,0 chrIV 184221 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3460;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.11;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:91:99:1772,204,0 chrIV 184320 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.87;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1958,222,0 chrIV 184717 . A G 2353 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2386,279,0 chrIV 184819 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.46;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1793,204,0 chrIV 184893 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.66;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1731,192,0 chrIV 184898 . A G 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.540;QD=17.19;ReadPosRankSum=1.695;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1649,169,0 chrIV 184999 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.27;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2564,291,0 chrIV 185041 . C T 2656 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1571;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.32;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2689,297,0 chrIV 185260 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.02;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1314,147,0 chrIV 185404 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.36;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2318,258,0 chrIV 185428 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.67;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2630,297,0 chrIV 185567 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.65;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1850,207,0 chrIV 185683 . T C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=4.771;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.687;QD=19.53;ReadPosRankSum=1.677;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1283,147,0 chrIV 185746 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.05;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1612,183,0 chrIV 185908 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7829;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=17.71;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1326,150,0 chrIV 186001 . G C 879 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.11;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:912,105,0 chrIV 186058 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.31;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1089,117,0 chrIV 186103 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.27;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1139,123,0 chrIV 186370 . T C 705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.358;QD=19.05;ReadPosRankSum=1.639;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:84:738,84,0 chrIV 186841 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.19;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1050,117,0 chrIV 187054 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1947,216,0 chrIV 187156 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1445,159,0 chrIV 187696 . G T 2309 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.20;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2342,261,0 chrIV 187789 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2850,306,0 chrIV 187843 . T C 2223 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2256,258,0 chrIV 188103 . C G 1906 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1939,225,0 chrIV 188217 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.85;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1453,162,0 chrIV 188469 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.90;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1008,114,0 chrIV 188734 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.91;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1128,120,0 chrIV 189502 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.91;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2202,237,0 chrIV 189732 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1657,183,0 chrIV 190810 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1553,174,0 chrIV 193723 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.59;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2339,255,0 chrIV 195160 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.49;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1494,174,0 chrIV 197286 . T C 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.717;DP=81;Dels=0.00;FS=21.115;HaplotypeScore=12.6914;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.411;QD=17.52;ReadPosRankSum=3.936;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:6,74:81:99:1452,168,0 chrIV 197364 . G C 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1942,219,0 chrIV 198656 . T C 2510 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0922;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.41;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2543,288,0 chrIV 198734 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.91;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2362,267,0 chrIV 199393 . G A 3283.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.78;SB=-2.082e+03 GT:AD:DP:GQ:PL 1/1:0,165:166:99:3283,354,0 chrIV 199455 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.932;DP=134;Dels=0.00;FS=15.024;HaplotypeScore=4.5095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.469;QD=18.69;ReadPosRankSum=4.126;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:6,128:134:99:2537,288,0 chrIV 199937 . A G 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.071;QD=21.53;ReadPosRankSum=1.701;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2401,273,0 chrIV 200220 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.58;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2194,246,0 chrIV 200331 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5195;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=13.36;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1302,147,0 chrIV 200337 . C T 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=93;Dels=0.00;FS=3.617;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.678;QD=12.32;ReadPosRankSum=-0.941;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1179,138,0 chrIV 200994 . T C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.632;QD=22.19;ReadPosRankSum=1.632;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1564,180,0 chrIV 201393 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2483,282,0 chrIV 201495 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.94;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1918,216,0 chrIV 201691 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.002;HaplotypeScore=10.8996;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.989;QD=23.83;ReadPosRankSum=2.393;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2082,231,0 chrIV 202811 . C A 1309 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.45;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1342,147,0 chrIV 202886 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.94;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1510,165,0 chrIV 202894 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.22;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1428,159,0 chrIV 202902 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.53;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1418,153,0 chrIV 202965 . G C 1879 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.35;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1912,216,0 chrIV 203022 . A G 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=99;Dels=0.00;FS=3.578;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.954;QD=21.39;ReadPosRankSum=1.697;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2151,246,0 chrIV 203056 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.12;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2156,252,0 chrIV 203089 . G A 2197 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.88;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2230,240,0 chrIV 203252 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.96;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1730,192,0 chrIV 203329 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.89;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1979,213,0 chrIV 203465 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.571;QD=16.84;ReadPosRankSum=1.692;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,85:90:99:1549,174,0 chrIV 203647 . G T 1222 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1255,138,0 chrIV 203795 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.09;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1511,165,0 chrIV 203839 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.962;QD=20.04;ReadPosRankSum=1.684;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1476,171,0 chrIV 203907 . A C 1346 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.0251;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.95;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1379,159,0 chrIV 204040 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1343,147,0 chrIV 204077 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1590,171,0 chrIV 204145 . A G 1516 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1549,177,0 chrIV 204262 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.966;QD=22.84;ReadPosRankSum=1.666;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2408,273,0 chrIV 204319 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2034,231,0 chrIV 204760 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.45;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1749,192,0 chrIV 204805 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.97;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1922,207,0 chrIV 208612 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1049;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.61;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1429,159,0 chrIV 208867 . A G 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.020;QD=20.02;ReadPosRankSum=1.651;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1735,198,0 chrIV 209035 . C T 2188 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.78;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2221,243,0 chrIV 210091 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=20.24;ReadPosRankSum=1.697;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2077,231,0 chrIV 210929 . G A 669 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:75:702,75,0 chrIV 211275 . G A 526 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=13.84;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:63:559,63,0 chrIV 211301 . C T 449 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.38;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:482,51,0 chrIV 211312 . A T 245 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.935;QD=18.85;ReadPosRankSum=1.470;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:1,12:13:30:278,30,0 chrIV 212179 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1781;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.77;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:947,105,0 chrIV 212438 . G C 231 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.5159;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=12.83;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:264,30,0 chrIV 212460 . A C 75.51 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=2.44;SB=-2.452e+01 GT:AD:DP:GQ:PL 1/1:0,27:31:12:108,12,0 chrIV 212479 . G C 97.26 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=3.47;SB=-5.027e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:15:130,15,0 chrIV 212573 . C T 580 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.71;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:613,69,0 chrIV 214676 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.00;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1797,204,0 chrIV 214858 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.66;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2058,222,0 chrIV 215967 . G C 1319 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.07;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1352,153,0 chrIV 216409 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=15.0635;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.47;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1658,180,0 chrIV 217405 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1415,150,0 chrIV 217651 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.70;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1461,162,0 chrIV 217745 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.85;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1013,117,0 chrIV 217905 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=19.18;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:973,105,0 chrIV 218548 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.26;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1796,195,0 chrIV 218572 . A T 2009 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.71;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2042,219,0 chrIV 218669 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.13;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1781,198,0 chrIV 218923 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.07;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1654,195,0 chrIV 219079 . T C 1368 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1401,156,0 chrIV 219175 . G A 989 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.31;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1022,114,0 chrIV 219340 . C A 1908 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.93;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1941,210,0 chrIV 220373 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=24.11;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2782,297,0 chrIV 220445 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.11;MQ0=1;QD=17.92;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1735,186,0 chrIV 220463 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=1;QD=16.28;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1612,174,0 chrIV 221090 . C A 839 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.51;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:872,96,0 chrIV 221471 . A G 836 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.44;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:869,96,0 chrIV 221893 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.57;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2109,234,0 chrIV 222073 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.01;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1240,138,0 chrIV 222257 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.02;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1486,159,0 chrIV 223377 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.14;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1738,195,0 chrIV 223943 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1170,126,0 chrIV 224112 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1101,120,0 chrIV 224809 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.93;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1590,174,0 chrIV 224854 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.40;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1905,204,0 chrIV 226059 . T C 2386 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2419,276,0 chrIV 227127 . A G 412 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.62;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:445,51,0 chrIV 227141 . G A 513 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.69;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:546,60,0 chrIV 227151 . G C 528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.325;QD=16.50;ReadPosRankSum=-0.217;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:63:561,63,0 chrIV 227288 . A G 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;DP=114;Dels=0.00;FS=4.926;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.177;QD=17.96;ReadPosRankSum=3.380;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:4,110:114:99:2081,237,0 chrIV 227641 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=22.93;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2464,273,0 chrIV 227893 . C T 1656 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=13;QD=17.25;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:10,86:96:99:1689,186,0 chrIV 228430 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=1;MQRankSum=0.282;QD=17.80;ReadPosRankSum=1.692;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1582,177,0 chrIV 228508 . G C 1550 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.45;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1583,183,0 chrIV 229444 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.07;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1139,129,0 chrIV 229448 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.69;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1150,126,0 chrIV 229466 . C A 833 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=17.35;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:866,93,0 chrIV 229467 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=17.87;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:891,99,0 chrIV 229538 . C T 441 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=10.26;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:474,51,0 chrIV 229690 . A C 1338 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.91;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1371,159,0 chrIV 229702 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.515;QD=16.92;ReadPosRankSum=1.685;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1302,150,0 chrIV 229828 . G C 1682 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.56;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:86:99:1715,195,0 chrIV 229868 . T A 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.5270;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.151;QD=22.11;ReadPosRankSum=1.694;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2111,228,0 chrIV 230296 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.99;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1392,150,0 chrIV 230389 . T C 693 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.25;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:726,84,0 chrIV 230663 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.07;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1688,192,0 chrIV 230677 . T C 1035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.573;QD=19.17;ReadPosRankSum=2.359;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:97:1068,97,0 chrIV 230680 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.07;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1009,117,0 chrIV 230893 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.34;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1719,186,0 chrIV 231260 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.63;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1662,186,0 chrIV 231400 . A T 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.464;HaplotypeScore=8.3450;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.047;QD=21.36;ReadPosRankSum=1.670;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2425,273,0 chrIV 231525 . A G 1696 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.74;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1729,195,0 chrIV 231629 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1600,177,0 chrIV 232181 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.06;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:630,66,0 chrIV 232245 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.90;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1048,111,0 chrIV 232341 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.38;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1202,135,0 chrIV 232597 . C A 2111 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.13;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2144,234,0 chrIV 232777 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.22;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1677,183,0 chrIV 233071 . A C 1821 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.37;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1854,210,0 chrIV 233134 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=18.25;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2187,255,0 chrIV 233173 . G A 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.3027;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.325;QD=15.82;ReadPosRankSum=0.764;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:1,137:140:99:2248,239,0 chrIV 233198 . C T 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.9148;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.026;QD=17.28;ReadPosRankSum=1.551;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2348,261,0 chrIV 233740 . T A 1295 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=18.50;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1328,147,0 chrIV 233915 . A C 1212 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8292;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.09;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1245,141,0 chrIV 233966 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.27;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1681,189,0 chrIV 234088 . A C 1323 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.17;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1356,153,0 chrIV 234097 . A T 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.549;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.710;QD=18.93;ReadPosRankSum=1.619;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1188,126,0 chrIV 234114 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.59;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:983,111,0 chrIV 234361 . T C 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=3.559;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.615;QD=22.75;ReadPosRankSum=1.615;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1375,153,0 chrIV 234547 . C G 1121 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.98;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1154,129,0 chrIV 234880 . T A 1941 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.57;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1974,213,0 chrIV 235604 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.4240;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1347,153,0 chrIV 235676 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.46;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:993,111,0 chrIV 235902 . C G 1295 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.23;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1328,147,0 chrIV 236009 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=15.70;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:912,99,0 chrIV 236074 . A G 1311 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=15.24;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1344,153,0 chrIV 236080 . T C 1109 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=13.86;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1142,132,0 chrIV 236082 . A T 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=15.62;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1220,129,0 chrIV 236508 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.08;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2804,312,0 chrIV 236610 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.25;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2035,234,0 chrIV 236619 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.79;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1937,219,0 chrIV 236627 . G A 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.827;QD=19.22;ReadPosRankSum=-0.671;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2166,231,0 chrIV 236928 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.46;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1290,150,0 chrIV 237219 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2460,282,0 chrIV 237273 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2375,264,0 chrIV 237312 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.22;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1801,201,0 chrIV 237441 . T G 2030 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.10;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2063,234,0 chrIV 237831 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.28;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1807,204,0 chrIV 237852 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.10;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1709,189,0 chrIV 237897 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.90;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2242,243,0 chrIV 237971 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.71;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2290,252,0 chrIV 238389 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3027;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.85;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2415,270,0 chrIV 238826 . G T 1991 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.32;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2024,219,0 chrIV 239462 . C T 2533 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.64;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2566,282,0 chrIV 239643 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.78;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1544,174,0 chrIV 239693 . T C 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.155;QD=17.29;ReadPosRankSum=1.608;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1485,171,0 chrIV 239755 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.62;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1601,183,0 chrIV 239899 . A G 982 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.23;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1015,114,0 chrIV 239907 . C T 789 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.78;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:90:822,90,0 chrIV 239984 . C T 593 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=12.10;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:69:626,69,0 chrIV 239991 . T C 625 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=13.89;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:658,75,0 chrIV 240090 . T C 762 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=14.94;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:795,90,0 chrIV 240185 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=20.67;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1025,111,0 chrIV 240193 . T A 1057 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=21.14;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1090,117,0 chrIV 240232 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=22.44;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1447,156,0 chrIV 240258 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=15.49;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:823,90,0 chrIV 240375 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.79;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1275,141,0 chrIV 240480 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.55;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1218,141,0 chrIV 240506 . C A 1362 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=19.74;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1395,150,0 chrIV 240532 . C A 1400 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.18;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1433,153,0 chrIV 240544 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=15.57;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1216,138,0 chrIV 240564 . T G 1213 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=14.79;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1246,141,0 chrIV 240610 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=14.85;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1132,123,0 chrIV 240612 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=14.76;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1125,129,0 chrIV 240647 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=16.32;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1420,156,0 chrIV 240657 . A C 1374 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=16.16;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1407,162,0 chrIV 240868 . G C 1677 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1009;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.96;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1710,195,0 chrIV 241065 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.24;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:757,87,0 chrIV 241166 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.83;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1474,159,0 chrIV 241206 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.44;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1102,126,0 chrIV 241406 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.71;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1464,162,0 chrIV 241816 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.33;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1386,153,0 chrIV 241861 . T A 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=5.351;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-1.155;QD=17.71;ReadPosRankSum=1.636;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1308,144,0 chrIV 241900 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.53;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1460,162,0 chrIV 241923 . A G 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-1.412;QD=17.40;ReadPosRankSum=1.679;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1164,132,0 chrIV 241945 . A G 752 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=13.67;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:785,90,0 chrIV 241962 . G A 706 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=10.86;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:81:739,81,0 chrIV 241990 . C T 356 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=6.98;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:42:389,42,0 chrIV 242001 . G C 272 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=31.1941;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=5.55;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:33:305,33,0 chrIV 242036 . C T 245 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=5.10;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:30:278,30,0 chrIV 242056 . C A 198.01 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=5.66;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:231,27,0 chrIV 242073 . A T 175.03 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=5.30;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:24:208,24,0 chrIV 242081 . A C 152.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=1.040;QD=5.07;ReadPosRankSum=1.617;SB=-3.391e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:21:185,21,0 chrIV 242090 . T G 248 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=7.52;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:33:281,33,0 chrIV 242141 . T C 477 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=11.92;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:510,57,0 chrIV 242306 . A G 637 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.20;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:670,75,0 chrIV 242932 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.85;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1975,213,0 chrIV 242997 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.90;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1590,168,0 chrIV 243004 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.06;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1767,189,0 chrIV 243234 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.15;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1383,153,0 chrIV 243244 . C G 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.24;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1255,144,0 chrIV 243379 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.74;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1402,153,0 chrIV 243421 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.93;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1568,168,0 chrIV 243616 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.74;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1185,129,0 chrIV 243985 . A G 2354 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2387,273,0 chrIV 244033 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.87;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2045,237,0 chrIV 244138 . T G 1495 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.20;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1528,174,0 chrIV 244150 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=2.742;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.854;QD=18.90;ReadPosRankSum=2.394;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1696,195,0 chrIV 244177 . G T 1367 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=15.90;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1400,159,0 chrIV 245081 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.04;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2095,228,0 chrIV 245366 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.56;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1518,171,0 chrIV 245905 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.99;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1826,204,0 chrIV 246213 . T C 1695 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.6473;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.71;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1728,198,0 chrIV 246316 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.78;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1550,177,0 chrIV 246646 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.58;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1631,183,0 chrIV 246664 . T G 1459 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.24;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1492,171,0 chrIV 246743 . G C 2112 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.77;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2145,243,0 chrIV 247340 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1992,213,0 chrIV 247465 . A G 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.780;HaplotypeScore=6.0020;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.229;QD=21.87;ReadPosRankSum=1.703;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2592,294,0 chrIV 248088 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.12;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1804,207,0 chrIV 248311 . T C 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=4.624;HaplotypeScore=6.9562;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.553;QD=18.53;ReadPosRankSum=1.613;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1126,126,0 chrIV 248350 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.89;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1850,204,0 chrIV 248513 . G C 1104 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.07;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1137,129,0 chrIV 248700 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1282,138,0 chrIV 248960 . T A 1644 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.4395;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.30;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1677,180,0 chrIV 249264 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1472,162,0 chrIV 249432 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.60;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1269,141,0 chrIV 249489 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.65;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1180,138,0 chrIV 249508 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.094;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.517;QD=19.09;ReadPosRankSum=1.597;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1503,165,0 chrIV 249519 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=77;Dels=0.00;FS=8.347;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.069;QD=18.64;ReadPosRankSum=2.384;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,73:77:99:1468,168,0 chrIV 249666 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1779,207,0 chrIV 249699 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1776,195,0 chrIV 250287 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.45;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1492,171,0 chrIV 250434 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3320;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.25;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:99:99:2236,252,0 chrIV 250548 . T C 2519 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2552,291,0 chrIV 250623 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.45;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2547,291,0 chrIV 251017 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.73;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1589,177,0 chrIV 251082 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.87;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1118,129,0 chrIV 251417 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2254,252,0 chrIV 251598 . C G 2104 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2137,243,0 chrIV 251630 . T A 2157 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2190,243,0 chrIV 251673 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.00;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2154,246,0 chrIV 252063 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.10;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1420,162,0 chrIV 252312 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.43;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2164,231,0 chrIV 252376 . A G 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.995;QD=19.35;ReadPosRankSum=1.695;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1852,213,0 chrIV 252749 . G T 1562 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.82;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1595,171,0 chrIV 253388 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.61;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1414,156,0 chrIV 253830 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.03;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1187,138,0 chrIV 253832 . T A 1149 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.68;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1182,135,0 chrIV 253904 . A G 527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.313;QD=15.97;ReadPosRankSum=1.628;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:63:560,63,0 chrIV 254055 . T A 1460 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1493,162,0 chrIV 254319 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.646;QD=18.84;ReadPosRankSum=1.681;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1295,150,0 chrIV 254451 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.80;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1932,213,0 chrIV 254508 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.31;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1470,171,0 chrIV 254813 . T G 1110 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.57;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1143,132,0 chrIV 254856 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.47;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1568,174,0 chrIV 255235 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.26;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1877,216,0 chrIV 255481 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7600;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.96;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1982,213,0 chrIV 255581 . A G 2260 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.16;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2293,264,0 chrIV 255870 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6650;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.60;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2677,294,0 chrIV 256122 . A C 1857 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.11;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1890,213,0 chrIV 256213 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.2924;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.87;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1640,180,0 chrIV 256652 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.00;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1313,141,0 chrIV 257200 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.49;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1222,138,0 chrIV 257223 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.44;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1280,141,0 chrIV 257386 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1470,162,0 chrIV 257501 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.48;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2639,300,0 chrIV 257530 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.88;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2484,273,0 chrIV 257569 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.26;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1843,213,0 chrIV 257586 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.72;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1630,177,0 chrIV 257626 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=18.35;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1556,177,0 chrIV 257704 . G T 2119 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.37;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2152,240,0 chrIV 257974 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.98;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1132,123,0 chrIV 258190 . T C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=66;Dels=0.00;FS=3.358;HaplotypeScore=7.2435;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=1.626;QD=20.09;ReadPosRankSum=1.359;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1359,153,0 chrIV 258250 . G C 1410 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.20;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1443,165,0 chrIV 258728 . G T 1764 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.05;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1797,195,0 chrIV 258995 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.55;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1972,222,0 chrIV 259049 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.89;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2016,222,0 chrIV 259088 . T C 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.022;QD=20.32;ReadPosRankSum=1.642;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1598,186,0 chrIV 259115 . A T 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.74;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,222,0 chrIV 259152 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.82;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1856,201,0 chrIV 259153 . C A 1794 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.71;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1827,201,0 chrIV 259167 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8791;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=18.93;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1623,174,0 chrIV 259388 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.47;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2615,279,0 chrIV 259676 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.51;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1828,207,0 chrIV 259881 . G C 1890 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.00;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1923,219,0 chrIV 259889 . G T 1889 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.22;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1922,213,0 chrIV 260003 . A G 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=3.478;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=19.58;ReadPosRankSum=1.662;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1012,114,0 chrIV 260180 . T C 1576 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.20;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1609,189,0 chrIV 260384 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.46;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1179,132,0 chrIV 260778 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.85;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1343,150,0 chrIV 260870 . A C 933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.206;QD=15.81;ReadPosRankSum=1.556;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:966,111,0 chrIV 261099 . A T 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,192,0 chrIV 261140 . G C 1510 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.57;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1543,174,0 chrIV 261167 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.33;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1270,141,0 chrIV 261182 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.40;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1199,138,0 chrIV 261197 . A G 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.917;QD=17.91;ReadPosRankSum=1.630;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1269,144,0 chrIV 261758 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.34;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1945,216,0 chrIV 261828 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=89;Dels=0.00;FS=3.424;HaplotypeScore=9.3497;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.063;QD=18.69;ReadPosRankSum=-1.535;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1696,192,0 chrIV 262380 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.28;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1404,153,0 chrIV 262384 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.6995;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.27;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1397,150,0 chrIV 262409 . C G 1238 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.87;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1271,147,0 chrIV 264197 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.77;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1073,123,0 chrIV 264290 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.96;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1186,129,0 chrIV 264299 . G T 1163 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.05;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1196,129,0 chrIV 264791 . A G 937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.336;QD=13.99;ReadPosRankSum=1.681;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:970,108,0 chrIV 265424 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.78;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1275,147,0 chrIV 265445 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=13.17;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1060,120,0 chrIV 265452 . T G 1026 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=13.86;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1059,123,0 chrIV 265606 . G T 1470 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.61;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1503,162,0 chrIV 265807 . A G 1041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=61;Dels=0.00;FS=6.394;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.503;QD=17.07;ReadPosRankSum=2.368;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:2,58:61:99:1074,120,0 chrIV 265841 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.25;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1055,114,0 chrIV 266017 . T C 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.966;QD=22.91;ReadPosRankSum=1.666;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2439,273,0 chrIV 266302 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.2695;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=16.74;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,144:156:99:2644,312,0 chrIV 266398 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=18.58;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1798,204,0 chrIV 266407 . A T 1659 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.64;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1692,192,0 chrIV 266544 . C A 2047 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.0436;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.89;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2080,222,0 chrIV 266671 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.88;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1521,168,0 chrIV 266733 . A C 1656 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=17.43;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1689,189,0 chrIV 266739 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.957;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.411;QD=17.06;ReadPosRankSum=1.696;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1688,189,0 chrIV 266797 . T A 1376 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=15.82;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1409,159,0 chrIV 266920 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.86;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1976,222,0 chrIV 268432 . C T 2639 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.4362;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.99;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2672,300,0 chrIV 268701 . A T 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=104;Dels=0.00;FS=2.934;HaplotypeScore=6.3626;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.179;QD=17.13;ReadPosRankSum=2.402;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1815,201,0 chrIV 268714 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.511;QD=15.58;ReadPosRankSum=1.699;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1669,192,0 chrIV 268735 . G T 1744 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.1444;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=15.57;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:1777,201,0 chrIV 269098 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8714;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.551;QD=21.57;ReadPosRankSum=1.575;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1931,222,0 chrIV 269283 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1932,213,0 chrIV 269350 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2100,234,0 chrIV 269406 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.28;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1684,183,0 chrIV 269772 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.70;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1758,195,0 chrIV 269891 . A G 1168 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.54;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1201,138,0 chrIV 269895 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=17.93;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1109,126,0 chrIV 270080 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.71;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2356,267,0 chrIV 270285 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.44;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2673,282,0 chrIV 270390 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.810;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.334;QD=22.95;ReadPosRankSum=1.671;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2626,297,0 chrIV 271080 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.82;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1922,207,0 chrIV 271176 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.65;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2026,231,0 chrIV 271505 . T G 2219 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.99;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2252,258,0 chrIV 272025 . A C 2445 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.66;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2478,279,0 chrIV 273000 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.37;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1479,168,0 chrIV 273273 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.50;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:662,72,0 chrIV 273339 . A G 602 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:635,75,0 chrIV 273857 . C T 701 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:81:734,81,0 chrIV 274301 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.13;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1999,228,0 chrIV 274589 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=3.4440;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.697;QD=19.88;ReadPosRankSum=0.892;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2001,206,0 chrIV 274595 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.4440;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.69;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2061,231,0 chrIV 274809 . A G 747 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.24;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:780,87,0 chrIV 275140 . T C 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.404;QD=21.44;ReadPosRankSum=2.355;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1148,129,0 chrIV 275205 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.68;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1440,162,0 chrIV 275448 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.389;QD=21.14;ReadPosRankSum=1.698;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2210,249,0 chrIV 275562 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.99;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2027,228,0 chrIV 275595 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.084;QD=21.59;ReadPosRankSum=1.598;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2257,252,0 chrIV 275730 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.53;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2433,264,0 chrIV 276204 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.5472;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.47;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1527,174,0 chrIV 276318 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.02;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1875,213,0 chrIV 276375 . T G 1863 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.25;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1896,219,0 chrIV 276561 . T C 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.262;QD=18.69;ReadPosRankSum=1.697;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1883,216,0 chrIV 276688 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.39;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2001,228,0 chrIV 276750 . C A 1510 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.1201;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.97;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1543,165,0 chrIV 276759 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0430;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.49;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1484,168,0 chrIV 276806 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.76;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1947,210,0 chrIV 276820 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.08;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1724,186,0 chrIV 276822 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=15.95;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1612,186,0 chrIV 276934 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.93;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2395,264,0 chrIV 276937 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.50;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2124,243,0 chrIV 277171 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.25;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2159,234,0 chrIV 277297 . C T 2970 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.8466;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.85;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3003,336,0 chrIV 277585 . C T 2857 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.580e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2890,324,0 chrIV 278341 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.3602;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.57;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2403,261,0 chrIV 278692 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.4611;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.84;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1597,180,0 chrIV 280191 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=4.708;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.019;QD=19.20;ReadPosRankSum=1.681;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1377,156,0 chrIV 280802 . A T 1180 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.45;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1213,138,0 chrIV 280847 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.04;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:935,102,0 chrIV 280898 . C T 900 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.65;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:933,102,0 chrIV 280934 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.86;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:957,111,0 chrIV 281102 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.11;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1046,120,0 chrIV 281207 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.16;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1142,126,0 chrIV 281213 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.43;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1126,123,0 chrIV 281306 . C A 1600 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.51;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1633,189,0 chrIV 281327 . T C 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.468;QD=19.44;ReadPosRankSum=1.592;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1491,171,0 chrIV 281392 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.52;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1255,141,0 chrIV 281474 . A G 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=7.879;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.385;QD=20.80;ReadPosRankSum=2.389;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1739,204,0 chrIV 281522 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.74;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1772,201,0 chrIV 281837 . G T 1777 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.71;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1810,198,0 chrIV 281966 . T A 2214 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.95;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2247,255,0 chrIV 282024 . T A 2216 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.61;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2249,246,0 chrIV 282068 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.10;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2265,258,0 chrIV 283730 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.83;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1692,192,0 chrIV 283794 . A C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.271;QD=23.29;ReadPosRankSum=1.190;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1966,228,0 chrIV 283814 . A G 1847 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.52;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1880,213,0 chrIV 283896 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:1138,129,0 chrIV 284003 . A G 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.578;QD=20.78;ReadPosRankSum=1.655;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:968,111,0 chrIV 284171 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.51;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2059,228,0 chrIV 284914 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1779,204,0 chrIV 285051 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.92;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1721,195,0 chrIV 285187 . A T 828 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.00;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:861,96,0 chrIV 285236 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.47;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1023,114,0 chrIV 285457 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.45;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2521,279,0 chrIV 285472 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.88;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1961,213,0 chrIV 285505 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.25;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1708,195,0 chrIV 285900 . G A 3554.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.5633;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.66;SB=-2.053e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3554,384,0 chrIV 285994 . A C 2673 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.80;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2706,315,0 chrIV 286222 . A G 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.034;QD=17.28;ReadPosRankSum=1.704;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2228,252,0 chrIV 286258 . A G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=128;Dels=0.00;FS=2.590;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.976;QD=16.72;ReadPosRankSum=2.896;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:3,124:128:99:2173,243,0 chrIV 286354 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.48;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1781,192,0 chrIV 286360 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.43;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1765,192,0 chrIV 287439 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.6576;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.82;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1597,174,0 chrIV 287535 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.28;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1919,219,0 chrIV 287589 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.69;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1809,195,0 chrIV 288063 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1514,174,0 chrIV 288140 . G T 1819 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.37;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1852,201,0 chrIV 288549 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.97;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1513,168,0 chrIV 288597 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.79;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1972,222,0 chrIV 288753 . A T 1846 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.72;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1879,207,0 chrIV 288760 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.45;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1919,204,0 chrIV 288918 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.11;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1702,186,0 chrIV 288945 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.58;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1741,189,0 chrIV 289365 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=16.71;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1403,156,0 chrIV 289615 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.33;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1782,204,0 chrIV 290079 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.72;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2487,279,0 chrIV 290284 . G T 2418 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2451,264,0 chrIV 291246 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.57;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1351,150,0 chrIV 291309 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.87;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1807,198,0 chrIV 291351 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.55;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2153,228,0 chrIV 291369 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.06;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1718,189,0 chrIV 291387 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1360,150,0 chrIV 291408 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=16.26;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1155,132,0 chrIV 291697 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.06;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1638,189,0 chrIV 291726 . T A 1610 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1430;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.40;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1643,183,0 chrIV 292017 . T G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=2.030;QD=21.73;ReadPosRankSum=2.270;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2727,312,0 chrIV 292517 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.09;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1430,159,0 chrIV 292751 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.82;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1822,210,0 chrIV 292776 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=20.07;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1518,171,0 chrIV 293191 . A T 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.025;QD=21.59;ReadPosRankSum=1.807;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1134,129,0 chrIV 293950 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1421,153,0 chrIV 294391 . T A 1361 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.31;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1394,156,0 chrIV 294427 . A G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.506;QD=19.06;ReadPosRankSum=1.679;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1272,144,0 chrIV 294517 . T C 940 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7156;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.08;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:973,111,0 chrIV 294643 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.13;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1958,225,0 chrIV 294697 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.30;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1758,201,0 chrIV 295928 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.77;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2275,258,0 chrIV 296063 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.6043;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.55;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2972,327,0 chrIV 296099 . A G 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=125;Dels=0.00;FS=5.937;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.073;QD=21.50;ReadPosRankSum=2.944;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2721,303,0 chrIV 296793 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=62;Dels=0.00;FS=6.151;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.117;QD=19.89;ReadPosRankSum=2.585;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,58:62:99:1266,141,0 chrIV 296817 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.09;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1193,135,0 chrIV 296942 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.09;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1488,162,0 chrIV 297184 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.09;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:992,114,0 chrIV 297926 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.80;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1903,207,0 chrIV 298213 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.10;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1611,180,0 chrIV 298400 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=22.21;ReadPosRankSum=1.699;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2410,276,0 chrIV 298579 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.61;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2210,249,0 chrIV 298871 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.66;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2047,228,0 chrIV 299385 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.49;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1889,201,0 chrIV 299608 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.82;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2177,246,0 chrIV 299764 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.01;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1592,180,0 chrIV 299792 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.60;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1457,156,0 chrIV 300204 . A T 1637 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=4.0887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.42;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1670,183,0 chrIV 300521 . C G 2098 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.61;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2131,243,0 chrIV 301033 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.24;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1895,213,0 chrIV 301246 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.80;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1048,117,0 chrIV 302250 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.07;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1298,150,0 chrIV 302429 . T G 1700 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.79;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1733,198,0 chrIV 302449 . G C 1434 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.73;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1467,165,0 chrIV 302961 . T C 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.472;QD=18.64;ReadPosRankSum=1.522;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1263,144,0 chrIV 303051 . C A 1073 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.03;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1106,120,0 chrIV 304008 . A T 1805 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.24;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1838,207,0 chrIV 304248 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1665,186,0 chrIV 304871 . T A 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=4.184;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=19.93;ReadPosRankSum=1.641;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1548,168,0 chrIV 305213 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.4634;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.02;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1174,132,0 chrIV 305554 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.683;QD=22.03;ReadPosRankSum=-1.098;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1597,186,0 chrIV 305992 . A G 1364 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.06;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1397,159,0 chrIV 306463 . C T 555 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.42;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:588,66,0 chrIV 307571 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.45;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1427,159,0 chrIV 307957 . C G 1983 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.28;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2016,231,0 chrIV 307974 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.00;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1311,144,0 chrIV 307984 . T C 1143 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.05;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1176,135,0 chrIV 308241 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.90;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2395,270,0 chrIV 310329 . A T 694 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.83;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:727,81,0 chrIV 310377 . T G 611 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:644,75,0 chrIV 310698 . T C 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=3.118;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;MQRankSum=0.042;QD=19.88;ReadPosRankSum=1.648;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:96:848,96,0 chrIV 311029 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.78;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1529,171,0 chrIV 311077 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.04;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1464,168,0 chrIV 311161 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.56;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1390,159,0 chrIV 311386 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.432;QD=20.16;ReadPosRankSum=2.397;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1928,219,0 chrIV 311442 . T G 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.8023;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.548;QD=18.24;ReadPosRankSum=1.695;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1766,204,0 chrIV 311476 . A G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.202;QD=20.82;ReadPosRankSum=1.642;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1636,183,0 chrIV 311500 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.56;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1779,207,0 chrIV 311602 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.98;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1172,129,0 chrIV 311752 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.39;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1778,195,0 chrIV 311890 . T G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.527;QD=22.59;ReadPosRankSum=2.379;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2405,261,0 chrIV 311986 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.38;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2128,234,0 chrIV 312184 . C T 2167 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.84;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2200,252,0 chrIV 312250 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.8273;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.01;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:2428,267,0 chrIV 312391 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.50;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1888,204,0 chrIV 312431 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3858;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.09;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1810,210,0 chrIV 312569 . A T 3662.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=174;Dels=0.00;FS=10.383;HaplotypeScore=6.8424;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.094;QD=21.05;ReadPosRankSum=2.379;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,172:174:99:3662,399,0 chrIV 312599 . G T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.16;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3534,381,0 chrIV 312701 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.388;QD=22.21;ReadPosRankSum=1.681;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1543,177,0 chrIV 313108 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.84;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1541,168,0 chrIV 313223 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.44;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1685,195,0 chrIV 313566 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=16.19;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1344,156,0 chrIV 313574 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.47;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1449,159,0 chrIV 313860 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=2.873;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.314;QD=19.93;ReadPosRankSum=2.325;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1209,135,0 chrIV 313905 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.74;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1207,138,0 chrIV 313974 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=16.36;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:802,90,0 chrIV 314015 . T C 877 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=14.38;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:910,105,0 chrIV 314143 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.49;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:960,108,0 chrIV 314207 . A C 358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-1.348;QD=13.26;ReadPosRankSum=1.605;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:45:391,45,0 chrIV 314232 . C A 441 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=15.75;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:474,51,0 chrIV 314269 . G C 360 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=13.33;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:393,45,0 chrIV 314500 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.04;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1185,129,0 chrIV 314561 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.32;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:787,90,0 chrIV 315134 . A G 581 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.37;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:614,72,0 chrIV 315627 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.69;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1195,138,0 chrIV 315813 . A G 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.439;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.707;QD=19.58;ReadPosRankSum=2.384;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1521,174,0 chrIV 316176 . C A 1598 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.49;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1631,180,0 chrIV 316389 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7938;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=15.92;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1545,174,0 chrIV 316640 . A G 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.642;DP=56;Dels=0.00;FS=7.758;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.735;QD=15.82;ReadPosRankSum=3.960;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:6,50:56:99:919,105,0 chrIV 316669 . C T 616 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.60;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:72:649,72,0 chrIV 316810 . G A 784 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=16.68;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:87:817,87,0 chrIV 316823 . T G 588 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.00;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:69:621,69,0 chrIV 316848 . G C 698 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=13.42;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:84:731,84,0 chrIV 316862 . T A 743 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=15.16;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:776,87,0 chrIV 317265 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.11;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1072,120,0 chrIV 317280 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.33;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1096,120,0 chrIV 317288 . T A 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.152;QD=18.05;ReadPosRankSum=1.672;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1098,117,0 chrIV 317652 . A G 1150 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.54;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1183,135,0 chrIV 317913 . G T 982 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.46;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1015,114,0 chrIV 318023 . A G 793 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:826,93,0 chrIV 318102 . A G 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=3.499;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.111;QD=20.34;ReadPosRankSum=1.659;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:989,114,0 chrIV 318156 . A G 793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=3.606;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.288;QD=20.33;ReadPosRankSum=1.644;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:93:826,93,0 chrIV 318226 . T C 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2756;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.767;QD=22.44;ReadPosRankSum=1.675;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1424,165,0 chrIV 318270 . G A 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=53;Dels=0.00;FS=3.274;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.713;QD=17.92;ReadPosRankSum=1.597;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:983,114,0 chrIV 318317 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.68;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1398,153,0 chrIV 318567 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.73;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:951,108,0 chrIV 318573 . C A 845 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=16.57;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:878,99,0 chrIV 318591 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=16.71;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:952,102,0 chrIV 318618 . C T 755 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=13.98;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:788,90,0 chrIV 318659 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.26;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1330,147,0 chrIV 318786 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.274;QD=20.67;ReadPosRankSum=1.641;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1604,180,0 chrIV 319275 . A G 833 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.33;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:866,99,0 chrIV 319641 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1100,123,0 chrIV 319917 . A G 1389 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.37;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1422,165,0 chrIV 320004 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1462,159,0 chrIV 320124 . A T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=100;Dels=0.02;FS=11.827;HaplotypeScore=102.1393;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-2.078;QD=0.25;ReadPosRankSum=3.232;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:5,93:98:6:56,6,0 chrIV 320177 . C G 1322 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.17;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1355,159,0 chrIV 320452 . G C 1573 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.13;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1606,183,0 chrIV 320475 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.43;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1491,165,0 chrIV 320548 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.46;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:65:99:1428,159,0 chrIV 320589 . T A 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=3.505;HaplotypeScore=8.5883;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.412;QD=21.83;ReadPosRankSum=1.679;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1474,162,0 chrIV 320785 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.28;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1139,132,0 chrIV 320881 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.08;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1197,135,0 chrIV 320975 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.46;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1159,126,0 chrIV 321001 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.04;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1385,150,0 chrIV 321012 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=16.73;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1355,153,0 chrIV 321013 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=16.81;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1361,153,0 chrIV 321074 . T G 1621 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.07;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1654,192,0 chrIV 321145 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=7.2042;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.119;QD=21.78;ReadPosRankSum=1.696;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2124,243,0 chrIV 321292 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=17.42;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:817,93,0 chrIV 321295 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=18.78;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:878,99,0 chrIV 321391 . G A 831 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.29;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:93:864,93,0 chrIV 321421 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.20;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:962,105,0 chrIV 321602 . A G 791 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.98;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:824,96,0 chrIV 321609 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.81;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:936,102,0 chrIV 321674 . A T 1304 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.29;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1337,144,0 chrIV 321729 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.63;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1281,147,0 chrIV 321734 . T C 1243 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.76;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1276,144,0 chrIV 321758 . C G 1134 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=16.43;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1167,132,0 chrIV 321807 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=12.37;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:837,96,0 chrIV 321827 . C A 740 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=11.38;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:87:773,87,0 chrIV 321836 . T A 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.072;DP=83;Dels=0.00;FS=2.447;HaplotypeScore=13.7091;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-1.180;QD=10.39;ReadPosRankSum=3.349;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:99:895,102,0 chrIV 321880 . T C 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.542;DP=80;Dels=0.00;FS=19.927;HaplotypeScore=59.5267;MLEAC=1;MLEAF=0.500;MQ=53.95;MQ0=0;MQRankSum=0.262;QD=0.28;ReadPosRankSum=-2.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,11:80:52:52,0,534 chrIV 321941 . A G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.039;QD=18.10;ReadPosRankSum=1.455;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:938,108,0 chrIV 321997 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4898;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.98;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:842,93,0 chrIV 322001 . T G 713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.766;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=2.6232;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.201;QD=16.20;ReadPosRankSum=-0.685;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:63:746,63,0 chrIV 322183 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.56;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2491,282,0 chrIV 322548 . A G 1018 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=20.78;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1051,120,0 chrIV 322680 . A C 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.59;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1495,171,0 chrIV 323098 . C T 1319 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1352,147,0 chrIV 323200 . G T 984 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1017,114,0 chrIV 323657 . A G 994 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2399;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=14.62;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1027,114,0 chrIV 323674 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=14.18;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:969,108,0 chrIV 323681 . T C 697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=65;Dels=0.00;FS=10.393;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=0;MQRankSum=-1.728;QD=10.72;ReadPosRankSum=2.336;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:87:730,87,0 chrIV 323690 . A G 324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=62;Dels=0.00;FS=2.626;HaplotypeScore=30.4904;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=1.050;QD=5.23;ReadPosRankSum=2.887;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:42:357,42,0 chrIV 323714 . A G 648 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=16.62;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:78:681,78,0 chrIV 323719 . T C 679 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=17.41;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:712,81,0 chrIV 323798 . T C 568 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.32;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:69:601,69,0 chrIV 324000 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.27;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1871,213,0 chrIV 324845 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.98;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1112,126,0 chrIV 324926 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.32;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1115,126,0 chrIV 324965 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.45;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:801,90,0 chrIV 325079 . C A 1124 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.29;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1157,132,0 chrIV 325337 . A C 806 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:839,96,0 chrIV 326210 . G C 1271 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.26;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1304,147,0 chrIV 326469 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=21.25;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:968,108,0 chrIV 326516 . T C 892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.520;QD=18.20;ReadPosRankSum=1.662;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:925,105,0 chrIV 326523 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.21;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:936,102,0 chrIV 326684 . G C 1533 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.93;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1566,180,0 chrIV 326933 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=16.74;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1004,114,0 chrIV 326984 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.689;QD=20.13;ReadPosRankSum=1.649;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1704,195,0 chrIV 327158 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.58;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1306,150,0 chrIV 327267 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.04;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:935,102,0 chrIV 327281 . T G 988 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=17.03;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1021,117,0 chrIV 327461 . T C 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.468;QD=18.65;ReadPosRankSum=1.685;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,73:78:99:1488,171,0 chrIV 327527 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=6.569;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.382;QD=22.81;ReadPosRankSum=1.674;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1379,156,0 chrIV 327597 . A G 887 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.17;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:920,102,0 chrIV 327647 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1343,144,0 chrIV 328142 . A T 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.560;QD=16.96;ReadPosRankSum=1.681;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1237,138,0 chrIV 328153 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.57;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1226,135,0 chrIV 328361 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.04;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1047,120,0 chrIV 328502 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.07;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1579,183,0 chrIV 328835 . A G 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.064;QD=20.49;ReadPosRankSum=1.672;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1201,135,0 chrIV 328957 . A C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=87;Dels=0.00;FS=3.059;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.186;QD=18.32;ReadPosRankSum=2.393;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1627,183,0 chrIV 329052 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.52;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1326,150,0 chrIV 329234 . C A 1258 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1291,141,0 chrIV 329319 . G C 1628 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0992;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.00;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1661,189,0 chrIV 329842 . T C 1143 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1176,132,0 chrIV 330214 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.95;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2282,261,0 chrIV 330288 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.00;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1373,156,0 chrIV 330635 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=53.5910;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.28;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1402,150,0 chrIV 330653 . A C 1207 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=4.6671;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.57;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1240,144,0 chrIV 330814 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.06;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1718,204,0 chrIV 330832 . A G 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=7.478;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.477;QD=19.43;ReadPosRankSum=2.351;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1490,177,0 chrIV 330985 . C G 1406 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.68;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1439,165,0 chrIV 331091 . C G 2450 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.68;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2483,288,0 chrIV 331464 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.57;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1227,138,0 chrIV 331731 . A G 816 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.40;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:849,99,0 chrIV 331794 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.94;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:643,72,0 chrIV 331885 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1068,117,0 chrIV 332001 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:909,102,0 chrIV 332744 . G T 1478 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.19;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1511,171,0 chrIV 332781 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.91;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1088,123,0 chrIV 333019 . G A 767 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.17;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:87:800,87,0 chrIV 333466 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.66;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1606,186,0 chrIV 333580 . T C 1116 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1149,132,0 chrIV 333642 . T A 1358 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.22;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1391,150,0 chrIV 333682 . G C 1257 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.95;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1290,147,0 chrIV 333747 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.53;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1712,183,0 chrIV 333753 . A T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=82;Dels=0.00;FS=9.863;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.136;QD=21.38;ReadPosRankSum=2.816;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1786,192,0 chrIV 333802 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.99;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1533,165,0 chrIV 333847 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.36;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1397,150,0 chrIV 334049 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.62;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1663,180,0 chrIV 334061 . A G 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=69;Dels=0.00;FS=3.072;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.034;QD=20.86;ReadPosRankSum=2.377;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1472,165,0 chrIV 334166 . A G 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=80;Dels=0.00;FS=3.245;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.322;QD=16.89;ReadPosRankSum=1.687;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,75:80:99:1384,159,0 chrIV 334393 . T C 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.052;QD=21.71;ReadPosRankSum=1.670;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1249,141,0 chrIV 334449 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.93;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1569,180,0 chrIV 334761 . G C 2116 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.54;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2149,249,0 chrIV 334888 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.54;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2295,261,0 chrIV 334894 . T C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=126;Dels=0.00;FS=3.041;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=1.855;QD=17.57;ReadPosRankSum=2.410;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:2,122:126:99:2247,252,0 chrIV 335332 . A C 1293 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.01;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1326,150,0 chrIV 335341 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=16.46;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1169,132,0 chrIV 335392 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.10;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1133,129,0 chrIV 335410 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=13.53;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1102,126,0 chrIV 335428 . C A 1330 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.29;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1363,150,0 chrIV 335956 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.49;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1426,162,0 chrIV 336275 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.10;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1922,222,0 chrIV 336657 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9128;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.83;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1976,216,0 chrIV 336884 . C G 2386 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.3793;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.40;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2419,273,0 chrIV 336922 . C G 2387 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.36;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2420,273,0 chrIV 336943 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.4899;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.06;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1910,225,0 chrIV 337570 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.759;QD=20.38;ReadPosRankSum=1.654;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1847,210,0 chrIV 337582 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.64;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1808,192,0 chrIV 337809 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.82;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1636,180,0 chrIV 338241 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.439;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.110;QD=20.91;ReadPosRankSum=1.673;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2479,282,0 chrIV 338341 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.89;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1587,171,0 chrIV 338368 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.29;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1171,132,0 chrIV 338505 . T G 1175 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.61;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1208,138,0 chrIV 338543 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.68;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1666,189,0 chrIV 338572 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.60;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1621,186,0 chrIV 338718 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.43;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1743,195,0 chrIV 338752 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1685,186,0 chrIV 339115 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.091;QD=18.43;ReadPosRankSum=2.409;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2263,255,0 chrIV 339268 . A G 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.869;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.284;QD=20.32;ReadPosRankSum=2.396;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1882,219,0 chrIV 339391 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1734,201,0 chrIV 339421 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.60;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1652,189,0 chrIV 339528 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.38;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1957,213,0 chrIV 339556 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.14;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1583,180,0 chrIV 339577 . C T 1285 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=15.86;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:81:99:1318,144,0 chrIV 339743 . C T 955 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.10;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:988,108,0 chrIV 339880 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.46;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1510,168,0 chrIV 339988 . A T 1975 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.44;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2008,222,0 chrIV 340208 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2217,237,0 chrIV 340351 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=15.40;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1327,144,0 chrIV 340395 . A T 527.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;DP=65;Dels=0.00;FS=13.928;HaplotypeScore=51.0578;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=0;MQRankSum=-2.252;QD=8.11;ReadPosRankSum=3.071;SB=-5.720e+02 GT:AD:DP:GQ:PL 0/1:4,61:65:23:557,0,23 chrIV 340555 . G T 3606.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=25.04;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3606,390,0 chrIV 340817 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.82;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1856,201,0 chrIV 340845 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.11;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1638,186,0 chrIV 340904 . C A 1381 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.26;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1414,153,0 chrIV 340933 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=17.89;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1393,156,0 chrIV 340962 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=16.86;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1129,123,0 chrIV 340965 . A T 990 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=14.78;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1023,111,0 chrIV 341033 . G A 847 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=14.36;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:880,99,0 chrIV 341261 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.9820;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.11;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1260,144,0 chrIV 341565 . A C 1585 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.01;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1618,186,0 chrIV 341596 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.65;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1528,171,0 chrIV 341782 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1094,123,0 chrIV 341812 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1314,144,0 chrIV 341953 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.01;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1882,204,0 chrIV 341978 . A C 1723 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.03;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1756,201,0 chrIV 342525 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.04;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2215,240,0 chrIV 342600 . A G 3351.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.60;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3351,372,0 chrIV 342650 . T C 3422.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=146;Dels=0.00;FS=2.402;HaplotypeScore=11.9422;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.076;QD=23.44;ReadPosRankSum=2.911;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:3,143:146:99:3422,396,0 chrIV 342883 . G C 2505 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.37;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2538,288,0 chrIV 343097 . T A 1928 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1961,219,0 chrIV 343292 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1585,171,0 chrIV 343410 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.66;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2118,231,0 chrIV 343448 . T C 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.676;QD=20.29;ReadPosRankSum=1.605;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1697,186,0 chrIV 343499 . T G 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.062;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.043;QD=21.03;ReadPosRankSum=2.364;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1842,216,0 chrIV 344267 . C G 1272 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.93;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1305,153,0 chrIV 344308 . A T 1712 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.40;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1745,192,0 chrIV 344659 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.1560;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.25;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1534,174,0 chrIV 344899 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.9642;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.35;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2577,288,0 chrIV 345017 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.93;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2670,294,0 chrIV 345083 . A C 1487 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=18.59;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1520,171,0 chrIV 345134 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=16.59;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1808,207,0 chrIV 345195 . A G 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.798;QD=17.99;ReadPosRankSum=1.708;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2569,300,0 chrIV 345209 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.908;QD=18.04;ReadPosRankSum=2.417;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,151:155:99:2829,327,0 chrIV 345524 . T C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.577;QD=19.08;ReadPosRankSum=1.692;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1693,192,0 chrIV 345541 . A T 1596 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.70;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1629,174,0 chrIV 345627 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7272;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.03;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1727,195,0 chrIV 345639 . T C 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.460;DP=103;Dels=0.00;FS=8.137;HaplotypeScore=8.0884;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.637;QD=17.92;ReadPosRankSum=3.691;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:5,98:103:99:1879,213,0 chrIV 345766 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.84;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1427,159,0 chrIV 345769 . T C 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.228;QD=17.63;ReadPosRankSum=1.550;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1373,156,0 chrIV 346096 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.41;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1653,177,0 chrIV 346111 . T C 1565 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.78;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1598,183,0 chrIV 346360 . C A 1550 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7351;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.49;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1583,177,0 chrIV 346366 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=15.99;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1600,180,0 chrIV 346477 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.04;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1656,180,0 chrIV 346531 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.75;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1453,171,0 chrIV 346536 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=15.92;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1450,162,0 chrIV 346558 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=16.09;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1658,183,0 chrIV 346745 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.17;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1707,183,0 chrIV 346903 . T C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.318;QD=19.41;ReadPosRankSum=1.393;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1819,201,0 chrIV 347059 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.62;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1871,213,0 chrIV 347078 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.4343;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.44;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1770,198,0 chrIV 347619 . C G 1747 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=17.65;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1780,204,0 chrIV 347623 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.45;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1708,195,0 chrIV 347851 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1337,147,0 chrIV 347958 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4821;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.55;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1410,156,0 chrIV 348204 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.17;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1430,153,0 chrIV 348434 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.38;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1209,132,0 chrIV 348490 . A G 930 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.63;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:963,108,0 chrIV 348778 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1092,120,0 chrIV 349051 . C G 1305 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1338,150,0 chrIV 349130 . G A 1631 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.46;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1664,180,0 chrIV 349165 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1691,189,0 chrIV 349421 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.08;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1190,135,0 chrIV 349576 . A T 1200 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1233,135,0 chrIV 350046 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.091;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.323;QD=22.39;ReadPosRankSum=1.615;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1354,153,0 chrIV 350077 . A G 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=7.027;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.062;QD=19.98;ReadPosRankSum=2.286;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1232,141,0 chrIV 350080 . C G 1246 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.77;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1279,144,0 chrIV 350388 . G T 1144 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.39;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1177,129,0 chrIV 350405 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5210;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.22;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1370,156,0 chrIV 350462 . A G 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.367;QD=16.48;ReadPosRankSum=1.680;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1121,126,0 chrIV 350480 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.79;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1456,168,0 chrIV 350505 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.80;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1209,138,0 chrIV 350644 . A C 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=20.18;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1405,162,0 chrIV 350645 . C A 1346 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=20.09;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1379,156,0 chrIV 350782 . A C 2414 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.55;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2447,279,0 chrIV 351028 . A G 748 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=11.00;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:90:781,90,0 chrIV 351097 . G A 2591 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.90;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2624,282,0 chrIV 351207 . G T 2578 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.30;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2611,288,0 chrIV 351214 . C A 2329 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=4.5037;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.43;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2362,258,0 chrIV 351676 . C T 2330 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.62;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2363,258,0 chrIV 351862 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.7688;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.93;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1665,192,0 chrIV 351963 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3696;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.18;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,113:120:99:2455,273,0 chrIV 351988 . C T 2879 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.56;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2912,327,0 chrIV 352048 . G A 3087 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.72;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3120,345,0 chrIV 352697 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=105;Dels=0.00;FS=13.468;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.798;QD=18.82;ReadPosRankSum=2.933;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2009,228,0 chrIV 352902 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1547,168,0 chrIV 353125 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.81;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1143,126,0 chrIV 353134 . G A 961 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.47;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:994,114,0 chrIV 353410 . T C 1498 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.36;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1531,174,0 chrIV 353682 . T G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.056;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=8.4459;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.434;QD=21.27;ReadPosRankSum=-1.732;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2011,225,0 chrIV 353761 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.79;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1820,204,0 chrIV 353794 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.536;QD=16.62;ReadPosRankSum=0.742;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1429,149,0 chrIV 353800 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0278;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=15.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1468,171,0 chrIV 354286 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2367,255,0 chrIV 354889 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.83;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1241,141,0 chrIV 354940 . C T 823 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.15;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:856,96,0 chrIV 354974 . A G 805 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.50;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:838,96,0 chrIV 354989 . A C 808 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.49;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:841,99,0 chrIV 355467 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.11;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2135,246,0 chrIV 356226 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2427,276,0 chrIV 356562 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.54;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2333,258,0 chrIV 356766 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.9821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1775,204,0 chrIV 356951 . T G 709 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=13.63;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:52:84:742,84,0 chrIV 356965 . A G 750 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.67;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:783,90,0 chrIV 357312 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.85;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1390,159,0 chrIV 357529 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.23;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2299,252,0 chrIV 357622 . A G 1589 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=113;Dels=0.00;FS=2.972;HaplotypeScore=5.8539;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-0.904;QD=14.06;ReadPosRankSum=2.058;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1622,186,0 chrIV 357625 . A G 1620 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.688;DP=111;Dels=0.00;FS=12.211;HaplotypeScore=5.8539;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-0.904;QD=14.59;ReadPosRankSum=3.760;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:5,105:111:99:1653,183,0 chrIV 357632 . A C 1579 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=15.79;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1612,183,0 chrIV 357709 . A G 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.094;QD=17.14;ReadPosRankSum=1.687;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1336,153,0 chrIV 357802 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.78;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1577,174,0 chrIV 358050 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.62;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1518,165,0 chrIV 358197 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.03;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1575,168,0 chrIV 358230 . T A 1370 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.79;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1403,156,0 chrIV 358243 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.622;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.689;QD=18.23;ReadPosRankSum=2.258;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1437,162,0 chrIV 358273 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.5571;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.51;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1276,147,0 chrIV 358299 . T C 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.000;QD=16.26;ReadPosRankSum=1.658;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1561,171,0 chrIV 358380 . C A 1437 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=13.82;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1470,168,0 chrIV 358389 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=13.59;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1270,144,0 chrIV 358431 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=16.71;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1403,156,0 chrIV 358561 . A T 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.410;HaplotypeScore=7.2864;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.289;QD=21.12;ReadPosRankSum=1.704;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2673,303,0 chrIV 358643 . G T 1759 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.52;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1792,204,0 chrIV 358690 . G T 1630 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=21.17;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1663,183,0 chrIV 358707 . T G 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0025;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.480;QD=19.46;ReadPosRankSum=1.696;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1901,213,0 chrIV 358755 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=19.28;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1884,216,0 chrIV 358884 . A C 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=3.253;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.926;QD=22.12;ReadPosRankSum=1.678;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2887,330,0 chrIV 358989 . T A 2231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=123;Dels=0.00;FS=2.929;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.716;QD=18.14;ReadPosRankSum=2.409;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2264,246,0 chrIV 359007 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2772;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.19;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1998,219,0 chrIV 359028 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=7.940;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.032;QD=17.46;ReadPosRankSum=2.407;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2024,219,0 chrIV 359072 . A T 1805 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.03;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1838,204,0 chrIV 359094 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.108;QD=17.38;ReadPosRankSum=2.378;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1823,210,0 chrIV 359167 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.1517;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.15;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2008,216,0 chrIV 359235 . A T 1961 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.42;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1994,216,0 chrIV 359239 . T C 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=104;Dels=0.00;FS=11.877;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.873;QD=16.90;ReadPosRankSum=2.932;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1791,204,0 chrIV 359293 . T G 2068 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.80;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2101,243,0 chrIV 359402 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.80;SB=-1.977e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3122,339,0 chrIV 359411 . A T 2768 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.33;SB=-1.902e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2801,312,0 chrIV 359427 . A G 2378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=6.188;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.903;QD=18.02;ReadPosRankSum=2.394;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2411,282,0 chrIV 359485 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.12;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1591,180,0 chrIV 359534 . A T 1312 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.48;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1345,150,0 chrIV 359556 . C G 779 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=16.93;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:812,90,0 chrIV 359557 . A G 818 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.04;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:851,90,0 chrIV 359718 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.45;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1978,216,0 chrIV 359743 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.113;DP=105;Dels=0.01;FS=7.045;HaplotypeScore=9.4026;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.881;QD=16.60;ReadPosRankSum=4.398;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:7,97:104:99:1776,198,0 chrIV 359793 . A T 1652 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.15;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1685,192,0 chrIV 359869 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.68;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1736,189,0 chrIV 360220 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.53;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1655,186,0 chrIV 360665 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=13.7067;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.732;QD=17.44;ReadPosRankSum=1.649;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1498,168,0 chrIV 361162 . T C 2705 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.36;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2738,309,0 chrIV 361844 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1456,171,0 chrIV 362071 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.06;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1348,150,0 chrIV 362927 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.34;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1782,201,0 chrIV 362945 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.91;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1981,228,0 chrIV 362993 . T C 2608 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.71;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2641,300,0 chrIV 363098 . C A 1854 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.54;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1887,213,0 chrIV 363511 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.49;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2246,255,0 chrIV 363742 . G T 1475 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.44;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1508,165,0 chrIV 363743 . A T 1470 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.93;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1503,165,0 chrIV 364251 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1724,186,0 chrIV 364948 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.206;QD=19.88;ReadPosRankSum=1.691;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1703,192,0 chrIV 365027 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=16.3963;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.41;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2140,243,0 chrIV 365106 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2034,222,0 chrIV 365434 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.677;QD=20.66;ReadPosRankSum=1.678;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2677,306,0 chrIV 365788 . G T 1995 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6011;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.47;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2028,222,0 chrIV 365821 . A G 2352 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.60;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2385,267,0 chrIV 366862 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.82;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1553,171,0 chrIV 367564 . G C 2176 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.53;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2209,255,0 chrIV 367618 . G A 2553 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.7087;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.64;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2586,282,0 chrIV 368092 . A G 1042 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4638;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=15.32;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1075,123,0 chrIV 368207 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1211,138,0 chrIV 368620 . G C 442 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.42;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:475,54,0 chrIV 368708 . T C 648 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=13.50;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:681,81,0 chrIV 368735 . G A 742 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=13.25;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:775,84,0 chrIV 369366 . C A 845 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.20;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:878,99,0 chrIV 369971 . G T 1376 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.59;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1409,156,0 chrIV 370499 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.47;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1029,111,0 chrIV 370634 . G C 873 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:906,105,0 chrIV 371085 . T C 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.283;QD=23.78;ReadPosRankSum=1.669;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1341,153,0 chrIV 371249 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.29;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1630,189,0 chrIV 371263 . A G 1506 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1539,177,0 chrIV 371437 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.377;QD=19.90;ReadPosRankSum=1.688;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1585,174,0 chrIV 371854 . G T 1333 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.50;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1366,147,0 chrIV 371914 . T A 1330 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.00;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1363,147,0 chrIV 372053 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=18.69;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1790,195,0 chrIV 372060 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=17.80;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1599,177,0 chrIV 372075 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=14.90;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1359,156,0 chrIV 372084 . A T 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-0.044;QD=14.06;ReadPosRankSum=1.688;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1130,123,0 chrIV 372093 . T C 944 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=13.11;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:977,108,0 chrIV 372119 . C T 606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=8.19;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:72:639,72,0 chrIV 372125 . A G 797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=7.361;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;MQRankSum=-0.387;QD=11.90;ReadPosRankSum=2.376;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:96:830,96,0 chrIV 372201 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.29;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1736,195,0 chrIV 372238 . G T 1923 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.6279;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.37;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1956,213,0 chrIV 372358 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=22.06;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1842,213,0 chrIV 372385 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.094;QD=19.30;ReadPosRankSum=1.639;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1461,168,0 chrIV 372390 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.81;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1479,162,0 chrIV 372433 . T A 907 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=16.49;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:940,105,0 chrIV 372540 . A T 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.617;QD=17.85;ReadPosRankSum=1.653;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1586,171,0 chrIV 372546 . A C 1417 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=15.57;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1450,168,0 chrIV 372671 . C T 3109 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.67;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:3142,342,0 chrIV 372729 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.42;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2342,255,0 chrIV 372821 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.87;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1314,144,0 chrIV 372855 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.37;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,156,0 chrIV 373033 . T C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=5.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.147;QD=17.62;ReadPosRankSum=1.695;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1689,189,0 chrIV 373089 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.21;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1690,183,0 chrIV 373357 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.15;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1027,111,0 chrIV 373363 . G A 901 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=18.02;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:934,105,0 chrIV 373390 . A G 703 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.57;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:736,84,0 chrIV 373399 . T C 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=5.093;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-1.320;QD=17.33;ReadPosRankSum=1.650;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:87:761,87,0 chrIV 373453 . C T 871 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.42;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:904,102,0 chrIV 373661 . G C 931 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.40;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:964,108,0 chrIV 373723 . T C 687 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.61;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:720,81,0 chrIV 373728 . T C 625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.079;QD=13.89;ReadPosRankSum=1.654;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:75:658,75,0 chrIV 374879 . A T 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=125;Dels=0.00;FS=8.012;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.446;QD=21.62;ReadPosRankSum=2.410;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2735,300,0 chrIV 374903 . G C 2363 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.04;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2396,270,0 chrIV 374909 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.99;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2282,249,0 chrIV 375032 . T A 1808 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.18;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1841,198,0 chrIV 375077 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.45;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1706,183,0 chrIV 375103 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.32;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1611,174,0 chrIV 375171 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.07;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1971,222,0 chrIV 375199 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.49;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1956,210,0 chrIV 375239 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.33;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1627,189,0 chrIV 375282 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.07;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1763,192,0 chrIV 375384 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.07;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1316,144,0 chrIV 375459 . A G 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.704;DP=74;Dels=0.00;FS=11.850;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.689;QD=19.78;ReadPosRankSum=3.704;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:5,69:74:99:1497,171,0 chrIV 375530 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=14.50;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:903,102,0 chrIV 375533 . A C 823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.962;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=-0.844;QD=13.72;ReadPosRankSum=2.327;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:93:856,93,0 chrIV 375542 . G T 865 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=13.73;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:898,102,0 chrIV 375611 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.95;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1720,186,0 chrIV 375690 . G C 2053 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.6872;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.61;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2086,234,0 chrIV 375773 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.339;QD=20.48;ReadPosRankSum=1.694;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1938,219,0 chrIV 375776 . T C 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.927;QD=20.59;ReadPosRankSum=1.692;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1804,207,0 chrIV 375826 . A T 1719 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3048;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.68;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1752,192,0 chrIV 375932 . T G 2253 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.99;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2286,258,0 chrIV 376289 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=97;Dels=0.00;FS=6.531;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.292;QD=20.24;ReadPosRankSum=2.348;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1996,228,0 chrIV 376391 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.14;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1870,210,0 chrIV 376487 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.34;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1750,201,0 chrIV 376661 . T A 2994 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.1342;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.03;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3027,330,0 chrIV 377176 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.466;QD=20.25;ReadPosRankSum=1.694;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1876,213,0 chrIV 377182 . C A 1757 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.74;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1790,195,0 chrIV 377306 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1145,129,0 chrIV 377351 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.35;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1058,114,0 chrIV 377486 . T G 1502 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.32;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1535,180,0 chrIV 377936 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6496;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.55;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1843,201,0 chrIV 378086 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.268;QD=20.13;ReadPosRankSum=1.586;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1462,168,0 chrIV 378253 . G T 1046 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.73;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1079,123,0 chrIV 378371 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.86;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1920,219,0 chrIV 378761 . T G 1404 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.77;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1437,162,0 chrIV 378788 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.12;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1120,120,0 chrIV 378801 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=14.92;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:928,105,0 chrIV 379372 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.01;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1434,165,0 chrIV 379570 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.88;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2254,255,0 chrIV 379603 . T A 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.84;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1825,210,0 chrIV 379825 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.66;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2306,267,0 chrIV 379874 . G T 2197 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.27;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2230,240,0 chrIV 379882 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=16.47;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:1976,219,0 chrIV 380035 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.79;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:2016,225,0 chrIV 380086 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.888;DP=81;Dels=0.00;FS=6.185;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.813;QD=21.38;ReadPosRankSum=2.763;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1765,204,0 chrIV 380427 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.13;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1639,174,0 chrIV 380668 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1136,126,0 chrIV 380824 . T C 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.315;QD=20.64;ReadPosRankSum=1.680;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1395,159,0 chrIV 381444 . G C 1584 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.42;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1617,183,0 chrIV 381450 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=19.24;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1668,180,0 chrIV 381458 . C G 1453 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=17.94;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1486,165,0 chrIV 381481 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-1.237;QD=15.94;ReadPosRankSum=1.552;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1260,144,0 chrIV 381576 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=21.35;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1207,138,0 chrIV 381701 . T C 1133 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.98;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1166,132,0 chrIV 381770 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=23.0782;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.50;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1125,123,0 chrIV 381822 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.55;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1841,213,0 chrIV 382153 . G T 3465.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5797;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.35;SB=-2.008e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3465,387,0 chrIV 382330 . C T 3190 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.99;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3223,363,0 chrIV 382372 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4227;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.67;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2410,267,0 chrIV 382504 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=126;Dels=0.00;FS=18.253;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.050;QD=16.60;ReadPosRankSum=3.329;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:4,119:126:99:2125,240,0 chrIV 382655 . T C 2347 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.6468;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.89;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2380,270,0 chrIV 382829 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=17.59;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1546,168,0 chrIV 382830 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.47;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1518,168,0 chrIV 383033 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=7.056;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-1.035;QD=22.49;ReadPosRankSum=2.371;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2147,243,0 chrIV 383065 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=20.28;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1960,225,0 chrIV 383227 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=20.16;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1505,168,0 chrIV 383229 . C T 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DP=75;Dels=0.00;FS=3.188;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;MQRankSum=1.686;QD=20.57;ReadPosRankSum=0.762;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1576,171,0 chrIV 383302 . A C 1458 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.69;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1491,168,0 chrIV 383320 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=17.75;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1595,177,0 chrIV 383380 . G C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DP=185;Dels=0.00;FS=1.029;HaplotypeScore=9.8916;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=1;MQRankSum=3.018;QD=9.43;ReadPosRankSum=-0.187;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:15,169:185:52:1778,52,0 chrIV 383389 . A G 1695 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=181;Dels=0.00;FS=2.206;HaplotypeScore=6.1698;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=1;MQRankSum=1.264;QD=9.36;ReadPosRankSum=-0.701;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:17,164:181:63:1728,63,0 chrIV 383394 . A C 1495.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5818;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=1;MQRankSum=4.278;QD=10.53;ReadPosRankSum=-2.106;SB=-1.294e+03 GT:AD:DP:GQ:PL 0/1:15,127:142:8:1525,0,8 chrIV 383395 . G A 1550.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.147;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.5818;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=1;MQRankSum=1.968;QD=10.92;ReadPosRankSum=-2.141;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:15,127:142:3:1580,3,0 chrIV 383405 . G C 1499.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.861;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=1;MQRankSum=2.745;QD=9.20;ReadPosRankSum=-2.781;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:15,148:163:4:1530,4,0 chrIV 383433 . T C 487.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;DP=132;Dels=0.00;FS=14.630;HaplotypeScore=3.8313;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=1;MQRankSum=0.905;QD=3.69;ReadPosRankSum=1.670;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:59,73:132:99:517,0,597 chrIV 383434 . A G 488.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;DP=132;Dels=0.00;FS=16.402;HaplotypeScore=4.7892;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=1;MQRankSum=-0.772;QD=3.70;ReadPosRankSum=1.772;SB=-6.820e+02 GT:AD:DP:GQ:PL 0/1:59,73:132:99:518,0,602 chrIV 383436 . C G 499.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=127;Dels=0.00;FS=11.450;HaplotypeScore=13.0846;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=1;MQRankSum=2.451;QD=3.93;ReadPosRankSum=1.586;SB=-6.930e+02 GT:AD:DP:GQ:PL 0/1:54,73:127:99:529,0,512 chrIV 383443 . G A 880 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=20.9535;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=1;QD=8.07;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:913,105,0 chrIV 383446 . T A 422.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DP=73;Dels=0.00;FS=14.029;HaplotypeScore=27.2386;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=1;MQRankSum=2.832;QD=5.78;ReadPosRankSum=2.243;SB=-5.561e+02 GT:AD:DP:GQ:PL 0/1:8,65:73:16:452,0,16 chrIV 383448 . G A 437.05 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;DP=73;Dels=0.00;FS=22.366;HaplotypeScore=39.5120;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=1;MQRankSum=2.577;QD=5.99;ReadPosRankSum=1.742;SB=-6.521e+02 GT:AD:DP:GQ:PL 0/1:7,66:73:17:467,0,17 chrIV 383449 . G A 429.09 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=72;Dels=0.00;FS=10.616;HaplotypeScore=38.6453;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=1;MQRankSum=0.643;QD=5.96;ReadPosRankSum=0.958;SB=-6.641e+02 GT:AD:DP:GQ:PL 0/1:4,68:72:14:459,0,14 chrIV 383450 . T C 265.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=39.4775;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=1;MQRankSum=0.519;QD=3.68;ReadPosRankSum=3.873;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:27,45:72:99:295,0,159 chrIV 383454 . C T 376.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;DP=73;Dels=0.00;FS=25.376;HaplotypeScore=44.1646;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=1;MQRankSum=0.798;QD=5.15;ReadPosRankSum=1.901;SB=-6.130e+02 GT:AD:DP:GQ:PL 0/1:8,65:73:21:406,0,21 chrIV 383457 . A C 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=69;Dels=0.00;FS=7.519;HaplotypeScore=38.2777;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=1;MQRankSum=0.600;QD=3.75;ReadPosRankSum=3.415;SB=-4.600e+02 GT:AD:DP:GQ:PL 0/1:11,45:69:37:289,0,37 chrIV 383458 . A G 331.98 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;DP=64;Dels=0.00;FS=18.076;HaplotypeScore=32.8197;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=0;MQRankSum=2.051;QD=5.19;ReadPosRankSum=2.001;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:5,59:64:3:361,0,3 chrIV 383493 . A G 114.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;DP=51;Dels=0.00;FS=61.659;HaplotypeScore=49.7605;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=0;MQRankSum=2.005;QD=2.24;ReadPosRankSum=4.964;SB=-1.064e+02 GT:AD:DP:GQ:PL 0/1:28,23:51:7:144,0,7 chrIV 383494 . G A 153.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=50;Dels=0.00;FS=13.672;HaplotypeScore=45.6828;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=0;MQRankSum=2.448;QD=3.06;ReadPosRankSum=1.125;SB=-4.211e+02 GT:AD:DP:GQ:PL 1/1:8,42:50:21:186,21,0 chrIV 383496 . T C 97.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003;DP=50;Dels=0.00;FS=73.028;HaplotypeScore=31.2927;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=2.920;QD=1.95;ReadPosRankSum=3.854;SB=-9.743e+01 GT:AD:DP:GQ:PL 0/1:27,23:50:7:127,0,7 chrIV 383497 . T G 107.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;DP=50;Dels=0.00;FS=73.028;HaplotypeScore=31.2927;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=2.122;QD=2.15;ReadPosRankSum=3.367;SB=-9.343e+01 GT:AD:DP:GQ:PL 0/1:27,23:50:7:137,0,7 chrIV 383501 . A C 148.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051;DP=50;Dels=0.00;FS=13.672;HaplotypeScore=25.3656;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=0;MQRankSum=2.183;QD=2.96;ReadPosRankSum=0.278;SB=-4.171e+02 GT:AD:DP:GQ:PL 1/1:8,42:50:21:181,21,0 chrIV 383513 . G C 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DP=48;Dels=0.00;FS=44.002;HaplotypeScore=17.7729;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=0;MQRankSum=1.981;QD=0.22;ReadPosRankSum=-3.116;SB=-1.526e+02 GT:AD:DP:GQ:PL 0/1:23,25:48:18:40,0,18 chrIV 383548 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.462;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=12.7971;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;MQRankSum=0.031;QD=0.86;ReadPosRankSum=2.554;SB=1.24 GT:AD:DP:GQ:PL 1/1:12,11:23:6:51,6,0 chrIV 383560 . T A 15.19 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=29;Dels=0.00;FS=7.634;HaplotypeScore=19.5861;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=0;MQRankSum=-0.722;QD=0.52;ReadPosRankSum=3.204;SB=1.06 GT:AD:DP:GQ:PL 0/1:5,24:29:16:45,0,16 chrIV 383561 . G A 16.16 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;DP=30;Dels=0.00;FS=4.929;HaplotypeScore=20.3748;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=1.131;QD=0.54;ReadPosRankSum=4.034;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:9,20:30:17:46,0,17 chrIV 383572 . C A 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=49;Dels=0.00;FS=9.305;HaplotypeScore=8.1321;MLEAC=1;MLEAF=0.500;MQ=29.23;MQ0=0;MQRankSum=2.501;QD=1.59;ReadPosRankSum=-0.822;SB=-5.130e+02 GT:AD:DP:GQ:PL 0/1:4,45:49:65:108,0,65 chrIV 383586 . T C 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DP=67;Dels=0.00;FS=111.745;HaplotypeScore=25.1186;MLEAC=1;MLEAF=0.500;MQ=33.12;MQ0=0;MQRankSum=2.727;QD=2.42;ReadPosRankSum=1.120;SB=-3.802e+01 GT:AD:DP:GQ:PL 0/1:29,38:67:79:192,0,79 chrIV 383596 . T G 273.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;DP=73;Dels=0.00;FS=86.979;HaplotypeScore=35.4007;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=1.833;QD=3.74;ReadPosRankSum=2.942;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:24,45:73:66:303,0,66 chrIV 383859 . C T 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.089;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0348;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=2.779;QD=17.17;ReadPosRankSum=2.666;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:5,53:58:70:1029,70,0 chrIV 383874 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=18.42;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:917,102,0 chrIV 383923 . G A 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;DP=141;Dels=0.01;FS=31.526;HaplotypeScore=72.9443;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=1;MQRankSum=-0.500;QD=0.42;ReadPosRankSum=-2.127;SB=-8.940e+02 GT:AD:DP:GQ:PL 0/1:44,96:140:89:89,0,208 chrIV 383933 . G A 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.752;DP=155;Dels=0.00;FS=9.548;HaplotypeScore=153.2654;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=1;MQRankSum=0.275;QD=0.48;ReadPosRankSum=0.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,24:155:99:105,0,252 chrIV 383938 . G A 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;DP=162;Dels=0.00;FS=40.526;HaplotypeScore=262.9003;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=1;MQRankSum=0.346;QD=0.48;ReadPosRankSum=0.382;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,39:162:99:108,0,303 chrIV 383940 . T C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=163;Dels=0.00;FS=188.229;HaplotypeScore=304.4852;MLEAC=1;MLEAF=0.500;MQ=29.36;MQ0=1;MQRankSum=2.827;QD=0.59;ReadPosRankSum=1.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,34:163:99:126,0,248 chrIV 383968 . T A 98.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;DP=167;Dels=0.02;FS=30.100;HaplotypeScore=227.4878;MLEAC=1;MLEAF=0.500;MQ=31.77;MQ0=1;MQRankSum=0.643;QD=0.59;ReadPosRankSum=-3.988;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:100,63:163:99:128,0,610 chrIV 384021 . C T 1996.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DP=166;Dels=0.00;FS=2.558;HaplotypeScore=43.4967;MLEAC=1;MLEAF=0.500;MQ=36.46;MQ0=1;MQRankSum=1.010;QD=12.02;ReadPosRankSum=2.160;SB=-1.143e+03 GT:AD:DP:GQ:PL 0/1:33,133:166:99:2026,0,111 chrIV 384035 . A G 1441.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;DP=167;Dels=0.00;FS=7.041;HaplotypeScore=28.9210;MLEAC=1;MLEAF=0.500;MQ=36.67;MQ0=1;MQRankSum=-0.626;QD=8.63;ReadPosRankSum=-3.384;SB=-7.720e+02 GT:AD:DP:GQ:PL 0/1:64,102:167:99:1471,0,877 chrIV 384038 . T C 870.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.734;DP=177;Dels=0.00;FS=4.673;HaplotypeScore=33.2786;MLEAC=1;MLEAF=0.500;MQ=36.48;MQ0=1;MQRankSum=0.443;QD=4.92;ReadPosRankSum=3.768;SB=-4.040e+02 GT:AD:DP:GQ:PL 0/1:115,61:177:99:900,0,1621 chrIV 384083 . G C 2274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;DP=310;Dels=0.00;FS=17.618;HaplotypeScore=52.2600;MLEAC=1;MLEAF=0.500;MQ=32.39;MQ0=1;MQRankSum=-2.480;QD=7.34;ReadPosRankSum=0.716;SB=-9.480e+02 GT:AD:DP:GQ:PL 0/1:140,170:310:99:2304,0,1978 chrIV 384094 . T A 6054.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=336;Dels=0.00;FS=9.310;HaplotypeScore=49.9367;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;MQRankSum=-0.270;QD=18.02;ReadPosRankSum=2.383;SB=-2.676e+03 GT:AD:DP:GQ:PL 1/1:2,334:336:99:6054,690,0 chrIV 384100 . G A 2388.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.536;DP=329;Dels=0.00;FS=1.923;HaplotypeScore=54.4705;MLEAC=1;MLEAF=0.500;MQ=32.63;MQ0=0;MQRankSum=2.688;QD=7.26;ReadPosRankSum=1.246;SB=-1.179e+03 GT:AD:DP:GQ:PL 0/1:173,156:329:99:2418,0,2387 chrIV 384103 . G A 4924.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.966;DP=333;Dels=0.00;FS=7.075;HaplotypeScore=64.7668;MLEAC=1;MLEAF=0.500;MQ=32.77;MQ0=0;MQRankSum=0.759;QD=14.79;ReadPosRankSum=1.039;SB=-2.395e+03 GT:AD:DP:GQ:PL 0/1:48,284:333:61:4924,0,61 chrIV 384180 . G A 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=172;Dels=0.00;FS=10.112;HaplotypeScore=45.5190;MLEAC=1;MLEAF=0.500;MQ=34.38;MQ0=0;MQRankSum=-2.560;QD=0.76;ReadPosRankSum=-1.292;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:143,29:172:99:161,0,2323 chrIV 384189 . G A 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=19.0294;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;MQRankSum=-0.262;QD=18.54;ReadPosRankSum=1.653;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2480,259,0 chrIV 384191 . C G 2429 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=19.91;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2462,282,0 chrIV 384204 . C T 817.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=17.5742;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=0;MQRankSum=0.455;QD=9.39;ReadPosRankSum=1.112;SB=-3.140e+02 GT:AD:DP:GQ:PL 0/1:29,58:87:99:847,0,522 chrIV 384219 . C T 233.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=48;Dels=0.00;FS=1.148;HaplotypeScore=12.8163;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=-1.086;QD=4.85;ReadPosRankSum=0.900;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:22,26:48:99:263,0,275 chrIV 384225 . G A 236 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.9491;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=10.73;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:269,33,0 chrIV 384240 . T C 277 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=15.39;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:310,36,0 chrIV 384257 . T C 538 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.8639;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=14.94;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:571,66,0 chrIV 384284 . G A 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=40.2972;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=3.269;QD=13.39;ReadPosRankSum=2.650;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:17,38:56:65:783,65,0 chrIV 384317 . C G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DP=83;Dels=0.00;FS=3.206;HaplotypeScore=31.2946;MLEAC=1;MLEAF=0.500;MQ=31.53;MQ0=0;MQRankSum=0.620;QD=0.49;ReadPosRankSum=-3.193;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:52,28:83:71:71,0,998 chrIV 384343 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.944;DP=146;Dels=0.00;FS=9.891;HaplotypeScore=133.6123;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=-0.622;QD=0.09;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,16:146:43:43,0,1220 chrIV 384347 . G A 163.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.345;DP=147;Dels=0.00;FS=0.764;HaplotypeScore=131.6729;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=-0.665;QD=1.11;ReadPosRankSum=2.551;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:115,31:147:99:193,0,1057 chrIV 384349 . T A 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;DP=150;Dels=0.00;FS=21.837;HaplotypeScore=116.7477;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=0;MQRankSum=-1.878;QD=0.25;ReadPosRankSum=2.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:134,16:150:68:68,0,1130 chrIV 384378 . G A 274.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=119;Dels=0.02;FS=4.532;HaplotypeScore=119.8586;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=0;MQRankSum=3.253;QD=2.30;ReadPosRankSum=1.153;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:60,57:117:99:304,0,689 chrIV 384379 . G A 364.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.936;DP=119;Dels=0.00;FS=12.288;HaplotypeScore=121.8418;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=0;MQRankSum=1.141;QD=3.06;ReadPosRankSum=-0.970;SB=-2.410e+02 GT:AD:DP:GQ:PL 0/1:68,49:119:99:394,0,556 chrIV 384383 . G A 284.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.637;DP=114;Dels=0.00;FS=77.616;HaplotypeScore=161.9475;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=0;MQRankSum=-0.648;QD=2.49;ReadPosRankSum=0.623;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:69,42:114:99:314,0,519 chrIV 384391 . A T 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.229;DP=91;Dels=0.00;FS=15.398;HaplotypeScore=260.0394;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=0.761;QD=1.20;ReadPosRankSum=4.697;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:67,24:91:99:139,0,412 chrIV 384393 . T A 96.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;DP=80;Dels=0.00;FS=1.146;HaplotypeScore=265.8325;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=0;MQRankSum=-1.342;QD=1.20;ReadPosRankSum=4.557;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:42,25:80:99:126,0,208 chrIV 384394 . T A 92.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.191;DP=78;Dels=0.00;FS=2.662;HaplotypeScore=249.8853;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=-1.343;QD=1.18;ReadPosRankSum=5.513;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:42,23:78:99:122,0,204 chrIV 384395 . G C 93.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=73;Dels=0.00;FS=6.708;HaplotypeScore=244.9918;MLEAC=1;MLEAF=0.500;MQ=26.97;MQ0=0;MQRankSum=0.196;QD=1.27;ReadPosRankSum=5.713;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:37,22:73:99:123,0,200 chrIV 384396 . G T 135.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;DP=70;Dels=0.00;FS=9.047;HaplotypeScore=244.2031;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=0.146;QD=1.93;ReadPosRankSum=5.420;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:33,22:70:99:165,0,196 chrIV 384398 . T A 179.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=66;Dels=0.00;FS=24.651;HaplotypeScore=246.3991;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=0;MQRankSum=0.201;QD=2.71;ReadPosRankSum=4.346;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:44,22:66:99:209,0,227 chrIV 384400 . A T 253.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;DP=64;Dels=0.00;FS=60.610;HaplotypeScore=236.7187;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=0;MQRankSum=0.893;QD=3.95;ReadPosRankSum=0.973;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:32,32:64:99:283,0,121 chrIV 384403 . T A 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DP=63;Dels=0.00;FS=15.767;HaplotypeScore=234.2999;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=0.076;QD=2.37;ReadPosRankSum=2.164;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:31,24:63:99:179,0,142 chrIV 384419 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420;DP=25;Dels=0.00;FS=18.177;HaplotypeScore=12.8735;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=0.999;QD=1.04;ReadPosRankSum=2.633;SB=-4.004e+01 GT:AD:DP:GQ:PL 0/1:18,7:25:56:56,0,83 chrIV 384581 . T G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.755;DP=85;Dels=0.00;FS=9.363;HaplotypeScore=57.2381;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;MQRankSum=-0.163;QD=16.36;ReadPosRankSum=2.387;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:4,77:85:99:1424,165,0 chrIV 384602 . T G 1639 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6736;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=17.82;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1672,192,0 chrIV 384607 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5835;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=17.49;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1747,201,0 chrIV 384757 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3981;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.34;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2494,276,0 chrIV 384792 . A C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=107;Dels=0.00;FS=2.577;HaplotypeScore=6.4582;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=1.538;QD=17.43;ReadPosRankSum=2.821;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1898,219,0 chrIV 384851 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.552;DP=98;Dels=0.00;FS=31.943;HaplotypeScore=18.5935;MLEAC=1;MLEAF=0.500;MQ=41.12;MQ0=0;MQRankSum=-2.406;QD=0.35;ReadPosRankSum=-1.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,23:98:64:64,0,828 chrIV 384852 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.412;DP=98;Dels=0.00;FS=31.943;HaplotypeScore=18.5935;MLEAC=1;MLEAF=0.500;MQ=41.12;MQ0=0;MQRankSum=-2.213;QD=0.31;ReadPosRankSum=-1.534;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,23:98:60:60,0,899 chrIV 384870 . A T 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=78;Dels=0.00;FS=4.949;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=-0.346;QD=13.85;ReadPosRankSum=1.686;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1113,123,0 chrIV 384885 . A T 857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=44;Dels=0.00;FS=2.342;HaplotypeScore=3.9614;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=1.723;QD=19.48;ReadPosRankSum=2.794;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:99:890,99,0 chrIV 384900 . A T 674 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=21.74;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:707,81,0 chrIV 384915 . A T 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=20;Dels=0.00;FS=2.645;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=0.199;QD=16.05;ReadPosRankSum=2.192;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:2,17:20:42:354,42,0 chrIV 384930 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.380;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:4,2:6:6:49,6,0 chrIV 385005 . A T 152.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=64;Dels=0.00;FS=18.086;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=10;MQRankSum=1.135;QD=2.38;ReadPosRankSum=1.482;SB=-2.107e+01 GT:AD:DP:GQ:PL 1/1:4,60:64:21:185,21,0 chrIV 385020 . A T 973 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0595;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=11;MQRankSum=0.087;QD=8.85;ReadPosRankSum=-1.522;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1006,108,0 chrIV 385064 . G A 1367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.029;DP=175;Dels=0.00;FS=10.780;HaplotypeScore=7.9164;MLEAC=1;MLEAF=0.500;MQ=44.84;MQ0=12;MQRankSum=8.657;QD=7.81;ReadPosRankSum=3.464;SB=-7.480e+02 GT:AD:DP:GQ:PL 0/1:93,80:175:99:1397,0,372 chrIV 385079 . A G 1964.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;DP=173;Dels=0.00;FS=44.691;HaplotypeScore=12.1630;MLEAC=1;MLEAF=0.500;MQ=50.38;MQ0=6;MQRankSum=2.815;QD=11.35;ReadPosRankSum=4.648;SB=-1.039e+03 GT:AD:DP:GQ:PL 0/1:36,136:173:99:1994,0,104 chrIV 385750 . T C 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=54;Dels=0.00;FS=10.057;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.677;QD=17.72;ReadPosRankSum=2.357;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:990,114,0 chrIV 385961 . G A 386 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=32.7293;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=8.98;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:48:419,48,0 chrIV 385972 . C T 107.26 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=20.5543;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=2.44;SB=-5.903e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:15:140,15,0 chrIV 386031 . G T 713 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.27;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:81:746,81,0 chrIV 386094 . T A 380 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=14.07;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:413,45,0 chrIV 386116 . T G 485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-0.400;QD=12.44;ReadPosRankSum=1.644;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:60:518,60,0 chrIV 386135 . T C 469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=3.547;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.927;QD=10.66;ReadPosRankSum=1.652;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:57:502,57,0 chrIV 386164 . A G 37.97 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=44.3589;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=0.76;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:9:70,9,0 chrIV 386462 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.92;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:822,93,0 chrIV 386517 . T A 869 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.38;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:902,96,0 chrIV 386603 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.83;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,32:36:87:783,87,0 chrIV 386635 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.67;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1111,120,0 chrIV 386657 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.74;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1011,111,0 chrIV 387346 . A C 764 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=1.9623;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.63;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:797,90,0 chrIV 387371 . C T 751 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.47;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:784,84,0 chrIV 387387 . C G 920 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.04;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:953,105,0 chrIV 387713 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=15.13;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1289,144,0 chrIV 388221 . G T 1648 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.60;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1681,189,0 chrIV 388305 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=85;Dels=0.00;FS=2.605;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.771;QD=15.96;ReadPosRankSum=2.917;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1390,159,0 chrIV 388338 . G T 1017 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.96;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1050,117,0 chrIV 388668 . A G 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.249;QD=19.95;ReadPosRankSum=1.652;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:891,99,0 chrIV 388785 . A G 851 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.34;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:884,105,0 chrIV 388871 . A G 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.133;QD=10.88;ReadPosRankSum=1.666;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:69:599,69,0 chrIV 388942 . A T 815 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.30;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:848,96,0 chrIV 388954 . G A 788 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=13.36;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:821,93,0 chrIV 389027 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.96;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1273,135,0 chrIV 389264 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.17;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2558,270,0 chrIV 389375 . T G 3004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=142;Dels=0.00;FS=5.482;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.355;QD=21.15;ReadPosRankSum=2.951;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:3037,345,0 chrIV 389601 . C A 2254 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.26;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2287,252,0 chrIV 390027 . C A 2274 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.99;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2307,249,0 chrIV 390120 . A T 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.181;QD=19.80;ReadPosRankSum=2.384;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1538,165,0 chrIV 390366 . A G 1758 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1791,201,0 chrIV 390450 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=10.6963;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=3.76;ReadPosRankSum=0.727;SB=1.27 GT:AD:DP:GQ:PL 1/1:1,4:5:6:50,6,0 chrIV 390501 . G A 98.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.85;MQ0=0;MQRankSum=1.054;QD=5.47;ReadPosRankSum=-0.211;SB=-3.514e-01 GT:AD:DP:GQ:PL 0/1:2,16:18:7:128,0,7 chrIV 390560 . C T 761 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=0.194;QD=8.36;ReadPosRankSum=-0.456;SB=3.00 GT:AD:DP:GQ:PL 1/1:46,45:91:87:794,87,0 chrIV 390570 . G T 881 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=9.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:914,102,0 chrIV 390669 . T A 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.341;QD=24.11;ReadPosRankSum=1.676;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1528,171,0 chrIV 390702 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5640;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.42;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1490,168,0 chrIV 390744 . A G 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=59;Dels=0.00;FS=7.482;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=1.423;QD=18.34;ReadPosRankSum=1.670;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:1,55:59:99:1115,132,0 chrIV 390756 . T A 952 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.43;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:985,111,0 chrIV 391128 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.72;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:894,102,0 chrIV 391149 . G C 818 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.78;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:96:851,96,0 chrIV 391193 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.61;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1290,147,0 chrIV 391314 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1514,174,0 chrIV 391712 . T C 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.312;DP=104;Dels=0.00;FS=3.424;HaplotypeScore=7.4150;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.627;QD=19.35;ReadPosRankSum=-1.067;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,99:104:99:2045,215,0 chrIV 392020 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.651;QD=18.72;ReadPosRankSum=1.691;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1643,189,0 chrIV 392287 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=71;Dels=0.00;FS=5.663;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.346;QD=16.79;ReadPosRankSum=1.683;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1225,141,0 chrIV 392385 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.38;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1467,156,0 chrIV 392938 . C A 2827 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9092;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.09;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2860,309,0 chrIV 392959 . C G 2363 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.90;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2396,279,0 chrIV 393270 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6589;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.77;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2135,237,0 chrIV 393421 . A G 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=9.425;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.605;QD=16.79;ReadPosRankSum=2.382;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1259,150,0 chrIV 393423 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.30;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1332,150,0 chrIV 393651 . T C 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;DP=113;Dels=0.00;FS=5.872;HaplotypeScore=10.4487;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-2.199;QD=19.54;ReadPosRankSum=2.595;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:3,109:113:99:2241,252,0 chrIV 394029 . G A 125.13 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=55.2111;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=1.60;SB=-9.671e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:18:158,18,0 chrIV 394249 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3421;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.91;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2370,264,0 chrIV 394360 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.53;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1634,186,0 chrIV 394381 . C A 1646 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.84;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1679,183,0 chrIV 394553 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=17.60;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2022,228,0 chrIV 394555 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.85;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2014,225,0 chrIV 394585 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.5344;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.04;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1861,213,0 chrIV 394723 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.225;QD=22.37;ReadPosRankSum=1.690;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1867,216,0 chrIV 394789 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.55;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1800,201,0 chrIV 394798 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.06;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1697,195,0 chrIV 395086 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=3.882;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.276;QD=17.43;ReadPosRankSum=1.693;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1567,183,0 chrIV 395248 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1185,129,0 chrIV 395530 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.34;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1690,186,0 chrIV 395767 . A T 1507 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.53;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1540,165,0 chrIV 396610 . C A 1586 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.34;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1619,174,0 chrIV 396862 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.79;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1405,162,0 chrIV 397012 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=15.55;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:966,111,0 chrIV 397272 . T G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.133;QD=24.30;ReadPosRankSum=1.694;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2244,255,0 chrIV 397336 . T A 1829 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.86;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1862,198,0 chrIV 397512 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1619,186,0 chrIV 397695 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6885;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.15;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2068,234,0 chrIV 397749 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.82;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2201,240,0 chrIV 397803 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.32;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1774,204,0 chrIV 397864 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1476,159,0 chrIV 397902 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.08;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1395,159,0 chrIV 398236 . C G 1438 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.17;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1471,165,0 chrIV 398297 . C A 1113 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.61;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1146,123,0 chrIV 398518 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.45;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1642,186,0 chrIV 398523 . T G 1595 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.55;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1628,186,0 chrIV 398655 . G C 1948 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2573;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.14;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1981,228,0 chrIV 398734 . T C 1519 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.99;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1552,177,0 chrIV 398862 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=14.37;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1355,153,0 chrIV 398875 . A C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.064;DP=90;Dels=0.00;FS=14.923;HaplotypeScore=9.4073;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.108;QD=13.07;ReadPosRankSum=3.358;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1209,138,0 chrIV 398907 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.74;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1623,186,0 chrIV 399007 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.32;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1760,192,0 chrIV 399193 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.33;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1273,144,0 chrIV 399202 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.00;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1453,159,0 chrIV 399434 . C G 1207 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.16;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1240,135,0 chrIV 400197 . A G 2239 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.17;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2272,258,0 chrIV 400242 . A T 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.059;QD=21.93;ReadPosRankSum=1.588;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1612,177,0 chrIV 400395 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.61;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1744,186,0 chrIV 400404 . G C 1715 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.94;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1748,198,0 chrIV 400491 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.99;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1649,189,0 chrIV 400709 . T A 1118 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1151,126,0 chrIV 401117 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.35;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,162,0 chrIV 401696 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.85;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1724,192,0 chrIV 401726 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.06;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1405,162,0 chrIV 402050 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.40;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1199,135,0 chrIV 402193 . T A 1325 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.08;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1358,153,0 chrIV 402371 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.92;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1149,132,0 chrIV 402856 . C A 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.9990;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.277;QD=22.08;ReadPosRankSum=1.247;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2263,243,0 chrIV 403346 . A G 1348 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.28;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1381,156,0 chrIV 403347 . A G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.732;QD=17.71;ReadPosRankSum=1.518;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1485,165,0 chrIV 403543 . T A 480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=3.104;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=-1.766;QD=10.00;ReadPosRankSum=2.293;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:60:513,60,0 chrIV 403544 . G A 496 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=10.12;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:60:529,60,0 chrIV 403580 . A C 1024 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.00;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1057,123,0 chrIV 403679 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.14;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1893,216,0 chrIV 403952 . T C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.216;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.997;QD=20.99;ReadPosRankSum=1.680;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1439,165,0 chrIV 404304 . C T 1060 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.2989;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.38;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1093,117,0 chrIV 404459 . A T 1397 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.54;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1430,159,0 chrIV 404690 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=19.27;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1825,201,0 chrIV 404702 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.42;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1830,207,0 chrIV 404730 . A C 1109 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.07;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1142,135,0 chrIV 404818 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.10;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1823,201,0 chrIV 404945 . G T 1420 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.32;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1453,165,0 chrIV 405116 . C A 737 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.02;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:770,84,0 chrIV 405143 . A G 741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.173;QD=13.72;ReadPosRankSum=2.868;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:3,50:54:90:774,90,0 chrIV 405362 . C A 1902 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.38;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1935,225,0 chrIV 405794 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.88;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2142,243,0 chrIV 406064 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.92;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2125,231,0 chrIV 406099 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.52;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2379,261,0 chrIV 406118 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.10;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2398,264,0 chrIV 406262 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.74;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1966,222,0 chrIV 406301 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=2.596;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.198;QD=19.04;ReadPosRankSum=2.389;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1575,177,0 chrIV 406385 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.92;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2400,270,0 chrIV 406814 . T C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.380;DP=83;Dels=0.00;FS=5.714;HaplotypeScore=6.1524;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.084;QD=20.70;ReadPosRankSum=1.056;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1751,174,0 chrIV 406901 . A T 1194 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.66;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1227,132,0 chrIV 407223 . G C 1115 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.76;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1148,132,0 chrIV 407286 . C G 1397 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.17;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1430,162,0 chrIV 407415 . G T 2419 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.83;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2452,264,0 chrIV 407972 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=68;Dels=0.00;FS=2.620;HaplotypeScore=5.2689;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.478;QD=18.69;ReadPosRankSum=2.897;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1304,147,0 chrIV 408038 . C T 492 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=14.47;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:525,57,0 chrIV 408128 . T A 698 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=16.23;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:731,78,0 chrIV 408131 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=14.96;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:736,81,0 chrIV 408202 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=15.20;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:945,108,0 chrIV 408254 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.15;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1471,156,0 chrIV 408416 . T A 1497 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=22.01;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1530,165,0 chrIV 408706 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.34;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1335,153,0 chrIV 408811 . A T 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.151;DP=88;Dels=0.00;FS=5.257;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=0.314;QD=16.56;ReadPosRankSum=3.091;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1490,168,0 chrIV 408812 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=16.94;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1507,168,0 chrIV 408877 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.87;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1599,177,0 chrIV 408894 . T G 1287 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.87;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1320,150,0 chrIV 409324 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.58;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1088,120,0 chrIV 409788 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.47;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1257,144,0 chrIV 409894 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.7044;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.01;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2388,270,0 chrIV 410282 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.71;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1275,147,0 chrIV 410326 . A G 865 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=11.69;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:898,102,0 chrIV 410333 . G C 886 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=11.97;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:919,105,0 chrIV 410348 . A T 642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=10.024;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;MQRankSum=-2.417;QD=8.56;ReadPosRankSum=2.384;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:75:675,75,0 chrIV 410352 . A C 656 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=5.006;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;MQRankSum=0.319;QD=8.63;ReadPosRankSum=1.687;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:78:689,78,0 chrIV 410358 . G A 643 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=8.46;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:75:676,75,0 chrIV 410363 . C A 648 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=8.20;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:75:681,75,0 chrIV 410364 . G A 644 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=8.15;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:75:677,75,0 chrIV 410375 . T C 657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;MQRankSum=-2.226;QD=7.47;ReadPosRankSum=2.394;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:81:690,81,0 chrIV 410477 . C G 548 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=13.70;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:581,66,0 chrIV 410485 . A G 562 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;QD=11.47;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:595,69,0 chrIV 410499 . G C 627 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=11.20;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:660,75,0 chrIV 410549 . C T 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=5.229;HaplotypeScore=57.8981;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=-0.693;QD=15.67;ReadPosRankSum=1.559;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:973,108,0 chrIV 410728 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=17.95;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1218,138,0 chrIV 411287 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.17;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2072,225,0 chrIV 411544 . T C 786 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=12.09;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:93:819,93,0 chrIV 411666 . T C 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.770;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.005;QD=20.40;ReadPosRankSum=1.647;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1706,195,0 chrIV 412079 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.93;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2445,270,0 chrIV 412382 . C T 2820 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.2746;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.89;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2853,318,0 chrIV 413236 . T G 855 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:888,102,0 chrIV 413241 . G A 873 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:99:906,108,0 chrIV 413252 . C A 1006 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1039,120,0 chrIV 413313 . T C 322 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=16.95;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:39:355,39,0 chrIV 413443 . G A 319 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.79;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:42:352,42,0 chrIV 413544 . T A 1075 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.94;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1108,126,0 chrIV 413545 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.44;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1155,129,0 chrIV 413595 . T C 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.929;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.332;QD=21.11;ReadPosRankSum=1.659;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1025,117,0 chrIV 414183 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1580,177,0 chrIV 414243 . T C 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.850;QD=22.68;ReadPosRankSum=1.606;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1303,147,0 chrIV 414564 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.03;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1928,216,0 chrIV 414726 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1641,186,0 chrIV 415078 . T C 2717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.889;QD=23.83;ReadPosRankSum=2.407;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2750,306,0 chrIV 415353 . G A 2604 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.46;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2637,285,0 chrIV 415413 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.57;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2929,333,0 chrIV 415430 . T C 2887 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.51;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:2920,333,0 chrIV 415728 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.683;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.879;QD=18.68;ReadPosRankSum=2.403;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2013,234,0 chrIV 415755 . G A 2628 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.6263;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.32;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,132:136:99:2661,291,0 chrIV 415969 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.73;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1681,192,0 chrIV 416043 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.485;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.269;QD=18.72;ReadPosRankSum=1.672;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2223,261,0 chrIV 416109 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.23;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3256,363,0 chrIV 416304 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.596;DP=102;Dels=0.00;FS=16.870;HaplotypeScore=3.8969;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.062;QD=19.56;ReadPosRankSum=3.751;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:5,97:102:99:2028,225,0 chrIV 416544 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=14.14;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1221,138,0 chrIV 416574 . T C 1057 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.10;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1090,129,0 chrIV 416628 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.86;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1240,138,0 chrIV 416675 . A G 1074 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=14.71;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1107,126,0 chrIV 416754 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.15;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1403,150,0 chrIV 416856 . G A 1002 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.27;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1035,114,0 chrIV 416872 . A C 680 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.89;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:713,84,0 chrIV 417015 . T C 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.976;QD=23.07;ReadPosRankSum=1.669;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1325,150,0 chrIV 417343 . A T 1799 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.94;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1832,198,0 chrIV 417375 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=16.68;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1551,168,0 chrIV 418485 . T C 2855 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.96;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2888,330,0 chrIV 418860 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.5690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2602,294,0 chrIV 419490 . G T 1948 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.73;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1981,222,0 chrIV 419688 . T G 1133 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2160;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.57;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1166,132,0 chrIV 419703 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.97;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1187,135,0 chrIV 419886 . A G 2993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=140;Dels=0.00;FS=4.301;HaplotypeScore=14.0739;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.707;QD=21.38;ReadPosRankSum=1.311;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3026,342,0 chrIV 420492 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.31;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1597,171,0 chrIV 420571 . C G 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=4.5172;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.879;QD=20.92;ReadPosRankSum=1.039;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1393,156,0 chrIV 420755 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1422,156,0 chrIV 420935 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.67;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1272,138,0 chrIV 420945 . A G 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.577;QD=17.77;ReadPosRankSum=1.672;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1046,117,0 chrIV 421109 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.84;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2130,237,0 chrIV 421368 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.41;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1275,138,0 chrIV 421380 . T C 1035 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.16;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1068,123,0 chrIV 421455 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.71;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1081,120,0 chrIV 421556 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.95;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1208,135,0 chrIV 421602 . T C 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=75;Dels=0.00;FS=5.298;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.316;QD=21.97;ReadPosRankSum=2.905;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:3,71:75:99:1681,189,0 chrIV 421790 . T G 1257 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.31;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1290,150,0 chrIV 421989 . C G 2099 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.07;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2132,240,0 chrIV 422280 . C G 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.42;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,159,0 chrIV 422318 . G T 2123 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.4122;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.44;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2156,237,0 chrIV 422454 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.44;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1394,162,0 chrIV 422515 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.06;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1417,159,0 chrIV 422595 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.76;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:96:871,96,0 chrIV 422672 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.02;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1486,174,0 chrIV 422745 . G C 991 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=67.5370;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=13.39;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1024,117,0 chrIV 422794 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=8.56;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:96:872,96,0 chrIV 422799 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=8.83;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:96:881,96,0 chrIV 423046 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.771;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.122;QD=20.37;ReadPosRankSum=1.697;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2050,234,0 chrIV 423061 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.01;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2113,240,0 chrIV 423118 . G C 1865 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=17.59;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1898,213,0 chrIV 423202 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.03;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2450,282,0 chrIV 423266 . C T 2216 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6728;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.31;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2249,243,0 chrIV 423322 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3985;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.953;QD=17.54;ReadPosRankSum=1.703;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2155,246,0 chrIV 423385 . T G 2254 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.95;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2287,264,0 chrIV 423430 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.4452;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.68;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1784,204,0 chrIV 423515 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.70;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1747,189,0 chrIV 423595 . C G 1444 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.28;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1477,174,0 chrIV 423759 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=15.34;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1107,123,0 chrIV 423818 . T A 1877 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.96;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1910,213,0 chrIV 423839 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.06;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1773,201,0 chrIV 423847 . G T 1836 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.33;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1869,207,0 chrIV 423908 . T C 985 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=15.63;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1018,117,0 chrIV 424226 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.06;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2150,234,0 chrIV 424325 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.6078;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.93;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1638,180,0 chrIV 424517 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.1575;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.87;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1586,180,0 chrIV 424905 . C A 2095 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.54;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2128,240,0 chrIV 425036 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.79;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2038,231,0 chrIV 425098 . G C 1952 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.33;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1985,222,0 chrIV 425718 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2055,228,0 chrIV 425932 . T C 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6059;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=1.028;QD=21.98;ReadPosRankSum=0.499;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1374,141,0 chrIV 426094 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.36;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1808,198,0 chrIV 426239 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.76;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1444,156,0 chrIV 426317 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=16.34;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1128,129,0 chrIV 426326 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.20;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1134,129,0 chrIV 426332 . A G 1068 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=17.23;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1101,129,0 chrIV 426362 . T C 724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=4.938;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.425;QD=13.66;ReadPosRankSum=1.667;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:87:757,87,0 chrIV 426545 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.68;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1269,147,0 chrIV 426781 . A T 894 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.32;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:927,99,0 chrIV 426788 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.98;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:932,105,0 chrIV 426944 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.10;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:87:778,87,0 chrIV 426951 . A G 693 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.24;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:81:726,81,0 chrIV 427072 . T C 766 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.24;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:799,90,0 chrIV 427169 . C T 495 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=5.0481;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:57:528,57,0 chrIV 427322 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.57;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1823,201,0 chrIV 427330 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.60;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1722,189,0 chrIV 427996 . A T 1923 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.37;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1956,219,0 chrIV 428383 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1967,213,0 chrIV 428558 . T C 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=3.012;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.767;QD=18.24;ReadPosRankSum=2.375;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1255,144,0 chrIV 428676 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1510,171,0 chrIV 428851 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.02;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1446,162,0 chrIV 428925 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.14;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1788,198,0 chrIV 429057 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.51;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2829,315,0 chrIV 430281 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.91;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2699,297,0 chrIV 430599 . A T 1439 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.56;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1472,165,0 chrIV 430933 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.31;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1077,117,0 chrIV 431267 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.92;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1376,156,0 chrIV 431674 . G C 1896 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=15.0480;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.39;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1929,222,0 chrIV 431897 . A T 1989 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.86;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2022,222,0 chrIV 431927 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.13;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2069,222,0 chrIV 432487 . G C 1377 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.86;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1410,162,0 chrIV 432803 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.94;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:49:99:1059,120,0 chrIV 432926 . C T 413 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=14.24;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:51:446,51,0 chrIV 432992 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.71;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1266,138,0 chrIV 433146 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.38;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1202,132,0 chrIV 433160 . A C 835 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.41;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:868,99,0 chrIV 433175 . C T 577 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.23;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:610,63,0 chrIV 433297 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.76;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1535,174,0 chrIV 433317 . C A 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.86;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1347,156,0 chrIV 433338 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.37;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1358,150,0 chrIV 433376 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.88;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:742,81,0 chrIV 433396 . A G 682 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=13.12;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:715,84,0 chrIV 433401 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.83;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:872,93,0 chrIV 433434 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.45;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2098,234,0 chrIV 433470 . C G 2582 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.26;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2615,288,0 chrIV 433591 . T A 1918 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.85;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1951,213,0 chrIV 433703 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.590;HaplotypeScore=4.9808;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.256;QD=20.53;ReadPosRankSum=1.689;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1696,189,0 chrIV 433742 . T C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=3.217;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-0.322;QD=20.45;ReadPosRankSum=1.692;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1833,207,0 chrIV 433889 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.51;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1206,138,0 chrIV 434124 . A G 368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.667;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9565;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;MQRankSum=1.467;QD=14.15;ReadPosRankSum=0.400;SB=-2.219e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:48:401,48,0 chrIV 434129 . T C 299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.484;DP=27;Dels=0.00;FS=2.395;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=-1.222;QD=11.07;ReadPosRankSum=2.182;SB=-2.035e+02 GT:AD:DP:GQ:PL 1/1:3,21:27:39:332,39,0 chrIV 434153 . T C 661 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=20.03;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:694,81,0 chrIV 434178 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=9.2000;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=21.91;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1041,111,0 chrIV 434368 . G C 877 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=23.08;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:910,105,0 chrIV 434371 . T A 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;MQRankSum=1.466;QD=22.56;ReadPosRankSum=0.489;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:78:913,78,0 chrIV 434639 . C T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrIV 434643 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrIV 434644 . A T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrIV 434645 . G C 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrIV 434649 . G T 33.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:65,6,0 chrIV 434651 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:51,6,0 chrIV 434921 . C T 251 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=10.91;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:284,30,0 chrIV 434933 . A G 281 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=12.22;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:314,36,0 chrIV 434947 . A G 403 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=14.93;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:51:436,51,0 chrIV 434973 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=22.42;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1042,111,0 chrIV 435000 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=21.47;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1128,123,0 chrIV 435004 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=20.42;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1115,129,0 chrIV 435072 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=21.68;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1464,168,0 chrIV 435113 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=20.52;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1962,219,0 chrIV 435139 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=21.20;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1771,198,0 chrIV 435202 . A C 908 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=19.74;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:941,108,0 chrIV 435213 . T A 802 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=17.43;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:835,93,0 chrIV 435214 . T C 754 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=18.39;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:787,93,0 chrIV 435275 . G A 245 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.4301;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=5.00;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:30:278,30,0 chrIV 435323 . A T 1059 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.29;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1092,120,0 chrIV 435397 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.48;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1308,147,0 chrIV 435510 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0887;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.231;QD=22.40;ReadPosRankSum=1.675;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1377,159,0 chrIV 435518 . A T 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-0.529;QD=19.18;ReadPosRankSum=1.684;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1414,156,0 chrIV 435680 . T C 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0621;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.403;QD=22.64;ReadPosRankSum=1.637;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1708,192,0 chrIV 435820 . A G 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.716;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.606;QD=16.37;ReadPosRankSum=1.646;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:78:688,78,0 chrIV 435908 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=16.40;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1132,123,0 chrIV 435952 . A G 353 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=8.02;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:45:386,45,0 chrIV 435990 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=12.93;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:757,84,0 chrIV 435991 . T G 739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-1.732;QD=12.74;ReadPosRankSum=0.896;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:87:772,87,0 chrIV 436011 . G A 955 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=15.16;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:988,108,0 chrIV 436026 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=7.061;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-1.051;QD=16.23;ReadPosRankSum=1.335;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1023,111,0 chrIV 436162 . A C 504 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=16.80;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:537,60,0 chrIV 436177 . C T 287 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=10.25;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:36:320,36,0 chrIV 436257 . G A 426 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=11.51;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,33:36:51:459,51,0 chrIV 436270 . G C 545 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=14.73;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:578,66,0 chrIV 436482 . T A 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.118;QD=21.63;ReadPosRankSum=1.688;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1785,195,0 chrIV 436543 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.36;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1678,186,0 chrIV 436565 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6995;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.55;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1564,180,0 chrIV 436742 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.21;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1878,210,0 chrIV 436884 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=22.39;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2473,276,0 chrIV 436994 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=20.93;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1561,174,0 chrIV 437035 . C A 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.54;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1049,114,0 chrIV 437130 . A G 973 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=19.08;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1006,114,0 chrIV 437637 . C T 482 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=11.76;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:60:515,60,0 chrIV 437695 . T G 141.06 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=3.71;SB=-5.107e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:21:174,21,0 chrIV 437738 . G A 432 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=14.40;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,26:30:51:465,51,0 chrIV 437881 . C T 355 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.75;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:388,42,0 chrIV 437896 . G A 469 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.37;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:502,54,0 chrIV 437955 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.72;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1297,147,0 chrIV 438009 . A T 1907 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=22.17;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1940,219,0 chrIV 438856 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.91;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1829,207,0 chrIV 439479 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.91;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1563,177,0 chrIV 439746 . A T 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.713;QD=19.92;ReadPosRankSum=1.664;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1049,117,0 chrIV 439768 . T C 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=2.941;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.573;QD=21.50;ReadPosRankSum=2.359;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1194,132,0 chrIV 439851 . C G 2057 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.86;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2090,228,0 chrIV 440889 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.40;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1991,231,0 chrIV 440913 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.208;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=0.308;QD=18.26;ReadPosRankSum=1.694;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1676,192,0 chrIV 440916 . A C 1587 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=18.03;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1620,186,0 chrIV 441071 . A G 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.218;HaplotypeScore=9.5445;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.858;QD=18.43;ReadPosRankSum=1.635;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2023,231,0 chrIV 441228 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2743;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.129;QD=21.37;ReadPosRankSum=1.643;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3313,387,0 chrIV 441285 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957;DP=112;Dels=0.00;FS=17.534;HaplotypeScore=2.4960;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=0;MQRankSum=2.861;QD=0.11;ReadPosRankSum=-4.351;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:105,7:112:42:42,0,256 chrIV 441323 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DP=109;Dels=0.00;FS=7.632;HaplotypeScore=85.5798;MLEAC=1;MLEAF=0.500;MQ=48.11;MQ0=0;MQRankSum=0.178;QD=0.19;ReadPosRankSum=-4.837;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:98,10:109:51:51,0,308 chrIV 441348 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.504;QD=16.65;ReadPosRankSum=1.512;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1864,213,0 chrIV 441367 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9995;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.36;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2134,231,0 chrIV 441465 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.5836;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.952;QD=19.54;ReadPosRankSum=1.701;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2221,258,0 chrIV 441629 . G A 1927 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.6274;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=17.84;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1960,216,0 chrIV 441636 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2614;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=18.31;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1937,222,0 chrIV 441738 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=16.47;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1334,147,0 chrIV 441971 . C T 868 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=15.50;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:901,99,0 chrIV 442638 . G T 681 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:714,78,0 chrIV 442746 . T C 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.543;QD=21.61;ReadPosRankSum=1.669;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1243,141,0 chrIV 442782 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.07;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1148,132,0 chrIV 442788 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.608;QD=15.85;ReadPosRankSum=2.376;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1095,123,0 chrIV 443218 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.45;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1375,156,0 chrIV 443281 . T A 1510 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.36;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1543,168,0 chrIV 443292 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=16.56;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1672,189,0 chrIV 443547 . A G 894 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.24;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:927,105,0 chrIV 443786 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.93;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2450,270,0 chrIV 443924 . C T 717 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.09;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:750,84,0 chrIV 444518 . T C 835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.059;QD=23.19;ReadPosRankSum=1.636;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:99:868,99,0 chrIV 444672 . G A 1657 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1690,183,0 chrIV 445021 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.31;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2621,306,0 chrIV 445249 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.40;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1682,192,0 chrIV 445472 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2128,240,0 chrIV 445581 . T C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.144;QD=18.21;ReadPosRankSum=1.636;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1344,156,0 chrIV 445817 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1816,195,0 chrIV 445993 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.43;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1194,138,0 chrIV 445998 . T A 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=-1.050;QD=17.47;ReadPosRankSum=1.627;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1186,132,0 chrIV 446016 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.53;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1166,123,0 chrIV 446066 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.010;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.642;QD=19.56;ReadPosRankSum=1.668;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1089,123,0 chrIV 446421 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.03;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1021,120,0 chrIV 446498 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.80;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1210,138,0 chrIV 446662 . A G 900 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:933,105,0 chrIV 446954 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.52;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1452,156,0 chrIV 447357 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.48;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1348,144,0 chrIV 447589 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.141;QD=18.82;ReadPosRankSum=1.690;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1595,183,0 chrIV 447952 . G C 2067 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.26;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2100,237,0 chrIV 448175 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.24;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1701,189,0 chrIV 448388 . T C 1660 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1693,195,0 chrIV 448634 . G C 1385 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=19.24;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1418,159,0 chrIV 449024 . A G 2335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.086;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.663;QD=23.35;ReadPosRankSum=1.663;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2368,276,0 chrIV 449471 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.39;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1210,135,0 chrIV 449477 . C G 1056 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.86;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,52:56:99:1089,120,0 chrIV 449562 . G A 698 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=23.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:78:731,78,0 chrIV 449566 . G C 603 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=21.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:72:636,72,0 chrIV 449578 . T C 671 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:78:704,78,0 chrIV 449579 . T C 599 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=18.15;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:72:632,72,0 chrIV 449650 . G T 615 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.57;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:648,75,0 chrIV 449709 . A G 578 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=16.06;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:69:611,69,0 chrIV 449722 . A T 398 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=13.72;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:54:431,54,0 chrIV 449742 . T C 255 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=14.17;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:288,33,0 chrIV 449823 . C T 292 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.86;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:325,36,0 chrIV 450139 . C T 311 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.28;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:39:344,39,0 chrIV 450232 . G A 1469 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=65;Dels=0.00;FS=18.062;HaplotypeScore=8.6521;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.678;QD=22.60;ReadPosRankSum=1.624;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1502,165,0 chrIV 451441 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=16.1368;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.50;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1692,192,0 chrIV 451867 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.97;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1291,144,0 chrIV 452236 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.176;QD=20.43;ReadPosRankSum=1.682;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1463,162,0 chrIV 452728 . T C 398 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.92;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,23:25:51:431,51,0 chrIV 452771 . C T 249 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.56;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:30:282,30,0 chrIV 453755 . T C 2262 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.75;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2295,258,0 chrIV 453908 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1699,186,0 chrIV 454024 . A G 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.784;HaplotypeScore=6.5938;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.555;QD=22.52;ReadPosRankSum=1.697;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2240,255,0 chrIV 454193 . G C 1531 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.01;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1564,177,0 chrIV 454502 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1341,150,0 chrIV 454715 . T A 862 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.67;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:895,99,0 chrIV 455316 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.65;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1256,135,0 chrIV 455455 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7613;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.43;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1954,213,0 chrIV 455545 . A T 1456 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1489,162,0 chrIV 455618 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.25;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1349,153,0 chrIV 456230 . A C 1612 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.91;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1645,189,0 chrIV 456237 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.31;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1663,186,0 chrIV 456343 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.71;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1399,162,0 chrIV 457343 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.93;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1540,174,0 chrIV 457403 . T C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.564;QD=20.36;ReadPosRankSum=1.460;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1865,210,0 chrIV 457431 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.71;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1649,186,0 chrIV 457671 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.09;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2223,243,0 chrIV 458036 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.01;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2190,234,0 chrIV 458153 . A T 1695 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.93;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1728,195,0 chrIV 458209 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2592,276,0 chrIV 458401 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.32;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1774,192,0 chrIV 458653 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.04;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2389,276,0 chrIV 459265 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.96;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1878,207,0 chrIV 459304 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.99;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1796,192,0 chrIV 459514 . G T 1715 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.42;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1748,195,0 chrIV 459567 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1972,216,0 chrIV 459811 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:814,93,0 chrIV 460219 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.20;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:902,102,0 chrIV 460279 . G A 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.309;QD=20.86;ReadPosRankSum=-1.299;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1201,132,0 chrIV 460660 . C G 768 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.07;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:801,90,0 chrIV 460852 . T C 2254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.100;QD=21.67;ReadPosRankSum=1.699;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2287,261,0 chrIV 461027 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.13;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2036,222,0 chrIV 461425 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:906,102,0 chrIV 461469 . G C 704 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.56;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:84:737,84,0 chrIV 461615 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.1479;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.71;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1623,186,0 chrIV 461656 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.20;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1876,213,0 chrIV 462063 . T G 2048 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2081,237,0 chrIV 462097 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1802,207,0 chrIV 462243 . A G 2035 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.20;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:2068,246,0 chrIV 463263 . C A 1968 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.39;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2001,213,0 chrIV 464138 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1390,153,0 chrIV 464487 . C G 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.4762;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.28;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1716,195,0 chrIV 464571 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.20;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1871,210,0 chrIV 465051 . T A 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=0.355;QD=14.10;ReadPosRankSum=1.688;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1147,126,0 chrIV 465056 . C G 1122 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=14.38;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1155,132,0 chrIV 465495 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.25;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2280,249,0 chrIV 465563 . T A 1588 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.68;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1621,186,0 chrIV 465662 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=143.7243;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.53;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1611,177,0 chrIV 465690 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.69;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1518,168,0 chrIV 465736 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=15.83;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1030,117,0 chrIV 465882 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.09;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2223,243,0 chrIV 466362 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.92;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2531,288,0 chrIV 466410 . T C 2865 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.6392;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.49;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:2898,330,0 chrIV 466737 . C T 2615 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.8415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.43;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2648,294,0 chrIV 467004 . T G 1938 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.28;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1971,231,0 chrIV 467328 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1638,189,0 chrIV 467442 . C T 1245 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1278,138,0 chrIV 467595 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.86;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1891,216,0 chrIV 467790 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.27;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2104,231,0 chrIV 468195 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.208;QD=18.66;ReadPosRankSum=1.704;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2365,273,0 chrIV 469194 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.46;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1235,132,0 chrIV 469322 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1387,153,0 chrIV 469779 . A T 1624 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1657,183,0 chrIV 470731 . A T 1321 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1354,147,0 chrIV 471113 . C T 1148 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.46;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1181,135,0 chrIV 471230 . C G 1156 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.28;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1189,135,0 chrIV 471249 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.4038;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.98;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1077,123,0 chrIV 471362 . A G 901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=6.808;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.030;QD=21.98;ReadPosRankSum=2.209;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:99:934,105,0 chrIV 471696 . A C 673 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=16.41;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:706,81,0 chrIV 472248 . T C 646 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=53;Dels=0.00;FS=9.445;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=9;MQRankSum=1.654;QD=12.19;ReadPosRankSum=1.654;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:78:679,78,0 chrIV 472536 . C T 1152 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=22;QD=13.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1185,132,0 chrIV 472584 . G A 1107 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.03;MQ0=8;QD=15.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,66:70:99:1140,135,0 chrIV 472593 . C T 1069 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=5;QD=16.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1102,120,0 chrIV 472644 . C T 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=73;Dels=0.00;FS=32.417;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=38.33;MQ0=10;MQRankSum=4.304;QD=10.71;ReadPosRankSum=3.189;SB=-4.160e+02 GT:AD:DP:GQ:PL 0/1:17,56:73:78:812,0,78 chrIV 472671 . T C 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;DP=82;Dels=0.00;FS=35.757;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.14;MQ0=8;MQRankSum=-6.027;QD=0.83;ReadPosRankSum=0.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,25:82:98:98,0,1058 chrIV 472918 . G A 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=2;MQRankSum=-0.545;QD=19.45;ReadPosRankSum=-1.700;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2173,217,0 chrIV 473411 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=3.900;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.508;QD=20.95;ReadPosRankSum=1.700;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2317,261,0 chrIV 473492 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9635;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.38;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2223,249,0 chrIV 473555 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1751,204,0 chrIV 474198 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.93;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2257,246,0 chrIV 474265 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.2730;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.94;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1755,204,0 chrIV 474320 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.64;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1815,204,0 chrIV 474321 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=102;Dels=0.00;FS=10.008;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.660;QD=17.27;ReadPosRankSum=2.867;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,96:102:99:1795,198,0 chrIV 474625 . T G 2038 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.38;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2071,234,0 chrIV 474628 . A G 2057 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.37;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2090,237,0 chrIV 474897 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.19;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1749,198,0 chrIV 475191 . A C 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.135;QD=19.15;ReadPosRankSum=1.486;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:99:1278,147,0 chrIV 475206 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.395;QD=19.18;ReadPosRankSum=1.684;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1414,159,0 chrIV 475233 . T C 1489 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.8687;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.61;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1522,168,0 chrIV 475384 . T A 1323 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.67;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1356,147,0 chrIV 475394 . C A 1067 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.13;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1100,117,0 chrIV 475407 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.54;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1015,111,0 chrIV 475608 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.16;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2280,258,0 chrIV 476011 . G T 645 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:678,72,0 chrIV 476201 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.39;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,29:31:69:603,69,0 chrIV 476602 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=0.217;QD=20.27;ReadPosRankSum=1.696;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1999,228,0 chrIV 476684 . G A 2899 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9548;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.57;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2932,315,0 chrIV 476875 . G C 2177 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.14;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2210,252,0 chrIV 476888 . C G 2476 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2931;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.81;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2509,285,0 chrIV 477034 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.11;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2929,339,0 chrIV 477857 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.88;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:952,108,0 chrIV 478019 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.48;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1429,165,0 chrIV 478092 . G C 1294 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.91;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1327,153,0 chrIV 478315 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.30;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1326,153,0 chrIV 478582 . G A 2976 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.72;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3009,321,0 chrIV 478801 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.369;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.055;QD=17.61;ReadPosRankSum=1.677;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2252,258,0 chrIV 478808 . C G 2163 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.73;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2196,246,0 chrIV 478942 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=15.71;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1903,216,0 chrIV 478977 . A G 3027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.569;DP=170;Dels=0.00;FS=7.991;HaplotypeScore=11.3466;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.116;QD=17.81;ReadPosRankSum=3.800;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:5,165:170:99:3060,348,0 chrIV 479106 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3861;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.66;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2549,276,0 chrIV 479694 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.84;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1303,147,0 chrIV 479946 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.599;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.073;QD=19.20;ReadPosRankSum=1.586;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1396,162,0 chrIV 480076 . G C 1384 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.97;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1417,159,0 chrIV 480096 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.46;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1528,174,0 chrIV 480624 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.63;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2066,222,0 chrIV 480726 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.41;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1896,207,0 chrIV 480846 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.57;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1845,198,0 chrIV 480860 . G T 1659 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.52;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1692,189,0 chrIV 480972 . C A 2421 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2454,273,0 chrIV 482148 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.87;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:998,114,0 chrIV 482672 . A G 647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=29.6496;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.436;QD=17.03;ReadPosRankSum=1.634;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,34:38:78:680,78,0 chrIV 482955 . T C 1096 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.93;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1129,129,0 chrIV 482988 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.37;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1353,147,0 chrIV 483119 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.16;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1041,120,0 chrIV 483136 . T C 853 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.31;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:886,102,0 chrIV 483162 . A G 774 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=19.35;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:807,90,0 chrIV 483171 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.37;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:745,81,0 chrIV 483341 . T C 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=57;Dels=0.00;FS=7.999;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.236;QD=18.19;ReadPosRankSum=2.364;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1070,117,0 chrIV 483420 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.82;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1015,111,0 chrIV 483422 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.62;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1051,111,0 chrIV 483501 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.31;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:903,105,0 chrIV 483545 . T G 1231 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.80;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1264,147,0 chrIV 483735 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.19;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1656,189,0 chrIV 483836 . T G 1031 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.22;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1064,123,0 chrIV 484026 . A G 1818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.167;QD=19.55;ReadPosRankSum=1.694;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1851,213,0 chrIV 484028 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.31;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1964,225,0 chrIV 484429 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.0189;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.17;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1854,198,0 chrIV 484952 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.04;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2858,318,0 chrIV 485332 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.68;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1568,180,0 chrIV 485593 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.249;QD=17.79;ReadPosRankSum=1.652;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1581,180,0 chrIV 485723 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.77;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1854,207,0 chrIV 486079 . A G 2470 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.92;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2503,291,0 chrIV 486540 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.155;QD=20.44;ReadPosRankSum=1.696;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1995,228,0 chrIV 486803 . C A 1256 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.94;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1289,141,0 chrIV 487279 . A G 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;DP=120;Dels=0.00;FS=6.131;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.995;QD=20.26;ReadPosRankSum=2.408;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2464,282,0 chrIV 487542 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.52;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2744,312,0 chrIV 488021 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.44;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1748,192,0 chrIV 488180 . T A 1832 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.43;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1865,195,0 chrIV 488205 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.06;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1844,207,0 chrIV 488377 . A C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.924;QD=21.27;ReadPosRankSum=1.646;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2586,297,0 chrIV 488489 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.75;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2274,252,0 chrIV 488586 . G T 1706 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.77;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1739,195,0 chrIV 488707 . A G 2748 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.22;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2781,318,0 chrIV 488892 . T G 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=78;Dels=0.00;FS=3.436;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.455;QD=16.26;ReadPosRankSum=1.686;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1301,147,0 chrIV 489061 . C G 1197 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=14.78;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1230,141,0 chrIV 489075 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.00;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1138,123,0 chrIV 489176 . T A 1498 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.71;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1531,168,0 chrIV 489259 . T A 1557 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3464;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.76;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1590,174,0 chrIV 489283 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.21;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1109,129,0 chrIV 489353 . T C 640 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=35.7521;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.84;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:78:673,78,0 chrIV 489433 . C T 311 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=16.37;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:19:39:344,39,0 chrIV 489543 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.66;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:894,102,0 chrIV 489556 . C T 301 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.71;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:334,36,0 chrIV 489675 . C T 867 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.08;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:900,99,0 chrIV 490530 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.49;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1924,216,0 chrIV 491020 . A T 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=91;Dels=0.00;FS=11.157;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.872;QD=22.11;ReadPosRankSum=2.394;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2045,222,0 chrIV 491804 . T A 1634 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.69;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1667,186,0 chrIV 492686 . T G 1876 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.05;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1909,210,0 chrIV 493876 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.22;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:925,105,0 chrIV 495483 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.30;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2018,228,0 chrIV 495642 . G T 1879 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1912,222,0 chrIV 496104 . A T 1065 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.48;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1098,123,0 chrIV 496558 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.51;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:997,108,0 chrIV 496589 . T C 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.100;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.247;QD=18.82;ReadPosRankSum=1.662;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:955,108,0 chrIV 497463 . T A 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.698;QD=18.28;ReadPosRankSum=0.943;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1879,204,0 chrIV 497525 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1678,183,0 chrIV 498016 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.02;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1745,198,0 chrIV 498138 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.99;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1552,171,0 chrIV 498305 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.84;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1889,210,0 chrIV 498490 . G T 1434 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=16.1684;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=15.76;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1467,165,0 chrIV 498744 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.3744;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.05;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2814,306,0 chrIV 498945 . G A 2656 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=8.6750;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.11;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2689,294,0 chrIV 499014 . A G 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.01;FS=2.985;HaplotypeScore=8.3372;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.238;QD=20.05;ReadPosRankSum=2.412;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2660,312,0 chrIV 499110 . G T 2278 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.31;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2311,255,0 chrIV 499324 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.05;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2282,258,0 chrIV 499794 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.95;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1474,165,0 chrIV 499860 . A G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.987;QD=16.99;ReadPosRankSum=1.644;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1375,153,0 chrIV 500512 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.04;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2057,219,0 chrIV 501667 . A C 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.005;QD=18.72;ReadPosRankSum=1.689;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1568,177,0 chrIV 502245 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2063,228,0 chrIV 502277 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.42;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1378,156,0 chrIV 502563 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.38;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1522,165,0 chrIV 502758 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.28;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1960,219,0 chrIV 502877 . T C 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.476;QD=19.95;ReadPosRankSum=1.689;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1649,186,0 chrIV 503212 . G C 2006 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.9705;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.48;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2039,234,0 chrIV 503249 . C A 2347 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2380,258,0 chrIV 503355 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.08;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1263,135,0 chrIV 503375 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=45.4259;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=14.61;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1012,114,0 chrIV 503490 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.85;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,219,0 chrIV 503628 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.29;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1758,201,0 chrIV 504046 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.67;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1735,189,0 chrIV 504071 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.33;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1526,165,0 chrIV 504159 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.89;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1587,174,0 chrIV 504183 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.78;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1176,129,0 chrIV 504204 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.37;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1319,147,0 chrIV 504609 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=17.28;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1312,150,0 chrIV 504869 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8544;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.52;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1736,198,0 chrIV 505041 . C A 1022 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.04;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1055,117,0 chrIV 505104 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.24;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1457,165,0 chrIV 505206 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.95;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1440,162,0 chrIV 505262 . T A 766 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=13.44;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:799,87,0 chrIV 505264 . T G 810 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=14.21;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:843,96,0 chrIV 505274 . T A 855 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=14.74;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:888,96,0 chrIV 505347 . T A 1247 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.88;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1280,141,0 chrIV 505466 . G T 1020 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.25;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1053,114,0 chrIV 505477 . C A 990 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=20.62;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1023,114,0 chrIV 505504 . T C 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;MQRankSum=0.709;QD=16.61;ReadPosRankSum=1.575;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:87:764,87,0 chrIV 505555 . A T 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.317;QD=18.06;ReadPosRankSum=-0.903;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1333,144,0 chrIV 505577 . A C 1646 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=18.70;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1679,183,0 chrIV 505795 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=24.12;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1263,135,0 chrIV 505808 . A G 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=-1.114;QD=21.29;ReadPosRankSum=1.670;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1225,141,0 chrIV 505821 . T A 971 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=18.32;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1004,111,0 chrIV 505842 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=16.07;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1013,114,0 chrIV 505847 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=15.70;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1085,120,0 chrIV 506042 . T G 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.017;DP=57;Dels=0.00;FS=2.978;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.713;QD=17.72;ReadPosRankSum=2.364;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1043,117,0 chrIV 506222 . A G 626 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.47;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:75:659,75,0 chrIV 506476 . C T 1083 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.43;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1116,129,0 chrIV 506865 . T G 1099 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.89;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1132,129,0 chrIV 507130 . G C 968 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.36;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1001,114,0 chrIV 507490 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=46.0367;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.07;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:949,111,0 chrIV 507495 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564;DP=50;Dels=0.00;FS=6.021;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-0.104;QD=0.32;ReadPosRankSum=-2.898;SB=-3.764e+00 GT:AD:DP:GQ:PL 1/1:47,3:50:6:47,6,0 chrIV 507535 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=16.26;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:716,78,0 chrIV 507634 . C G 1608 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.44;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1641,183,0 chrIV 507961 . A G 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=4.543;HaplotypeScore=6.9602;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.264;QD=18.65;ReadPosRankSum=1.639;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:81:723,81,0 chrIV 508803 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.51;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2687,294,0 chrIV 508845 . G A 2702 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.63;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2735,294,0 chrIV 508908 . T C 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=111;Dels=0.00;FS=6.061;HaplotypeScore=9.8199;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.644;QD=18.55;ReadPosRankSum=2.405;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2092,234,0 chrIV 509064 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=5.661;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.107;QD=19.28;ReadPosRankSum=1.689;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1595,180,0 chrIV 509186 . A T 2260 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.7844;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=16.74;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2293,252,0 chrIV 509407 . G T 795 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:828,90,0 chrIV 509488 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1217,135,0 chrIV 509559 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.65;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1499,171,0 chrIV 509676 . C T 648 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.64;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:681,75,0 chrIV 509695 . T C 579 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.09;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:612,69,0 chrIV 509797 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.93;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1184,132,0 chrIV 509831 . T C 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=4.914;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.391;QD=17.58;ReadPosRankSum=1.676;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1123,126,0 chrIV 510085 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.98;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1607,177,0 chrIV 510199 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1315,144,0 chrIV 510253 . C G 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1176,135,0 chrIV 510505 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.85;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2327,258,0 chrIV 510811 . A G 2489 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2522,291,0 chrIV 511129 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.06;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2079,234,0 chrIV 511343 . C G 1620 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.51;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1653,186,0 chrIV 511385 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0898;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.44;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1550,177,0 chrIV 511400 . T G 1314 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.83;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1347,156,0 chrIV 511405 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=15.45;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1176,129,0 chrIV 511432 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.32;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1339,144,0 chrIV 511483 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.24;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1671,180,0 chrIV 511492 . T C 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.032;QD=17.03;ReadPosRankSum=1.695;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1634,183,0 chrIV 511663 . T A 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.416;QD=18.57;ReadPosRankSum=1.663;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1927,213,0 chrIV 511717 . C A 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.36;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1756,192,0 chrIV 511770 . G C 1715 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.17;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1748,198,0 chrIV 511815 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.23;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1732,192,0 chrIV 512370 . T C 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.324;QD=22.11;ReadPosRankSum=2.320;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2156,237,0 chrIV 512392 . T C 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.299;QD=18.86;ReadPosRankSum=1.673;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1146,132,0 chrIV 512393 . G A 1150 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.83;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1183,129,0 chrIV 512455 . G T 1216 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=19.00;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1249,138,0 chrIV 512478 . A G 1244 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=16.16;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1277,147,0 chrIV 512484 . G C 1370 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=17.12;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1403,162,0 chrIV 512511 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=15.23;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1267,147,0 chrIV 512521 . C A 1427 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=15.68;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1460,159,0 chrIV 512535 . C G 1350 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=15.34;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1383,153,0 chrIV 512542 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=15.19;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1400,156,0 chrIV 512603 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=20.3117;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.06;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2219,252,0 chrIV 512625 . A T 2518 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.90;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2551,273,0 chrIV 512664 . A G 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.798;QD=18.04;ReadPosRankSum=2.870;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1566,180,0 chrIV 512755 . T C 733 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=13.33;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:87:766,87,0 chrIV 512796 . T C 404 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=13.03;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:437,54,0 chrIV 512817 . T A 340 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=14.17;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:45:373,45,0 chrIV 512840 . T C 218 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=14.53;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,13:15:33:251,33,0 chrIV 512849 . T A 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=18.45;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:236,30,0 chrIV 512850 . T A 203 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=15.62;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:236,30,0 chrIV 512878 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=12.38;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:69:553,69,0 chrIV 512908 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=15.31;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:72:630,72,0 chrIV 512921 . A G 560 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=14.36;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:593,69,0 chrIV 512937 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=13.95;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:69:591,69,0 chrIV 513059 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;QD=26.04;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:81:762,81,0 chrIV 513065 . C G 579 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=22.27;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:69:612,69,0 chrIV 513082 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=21.04;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:559,60,0 chrIV 513116 . C A 407 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=20.35;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:51:440,51,0 chrIV 513131 . A G 377 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=20.94;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:48:410,48,0 chrIV 513172 . T A 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=8.24;SB=-7.107e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:140,18,0 chrIV 513176 . C T 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=0;QD=19.90;SB=-6.796e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:232,27,0 chrIV 513182 . T C 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=0;QD=14.71;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:121,15,0 chrIV 513193 . A C 61.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=12.30;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:94,12,0 chrIV 513196 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=13.30;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:99,12,0 chrIV 513211 . T G 118.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=14.77;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:18:151,18,0 chrIV 513222 . G A 213.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=16.39;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:246,27,0 chrIV 513623 . A G 310 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=23.85;SB=-5.300e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:39:343,39,0 chrIV 513651 . A T 350 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=25.00;SB=-7.900e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:42:383,42,0 chrIV 515015 . G A 61.51 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=0;QD=1.92;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:12:94,12,0 chrIV 515021 . T A 67.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=0;MQRankSum=1.444;QD=1.88;ReadPosRankSum=1.636;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:1,35:36:12:100,12,0 chrIV 515027 . A G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=0;QD=1.70;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:12:97,12,0 chrIV 515030 . A G 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=0;QD=1.59;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:12:93,12,0 chrIV 515036 . G A 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=0;QD=1.52;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:12:98,12,0 chrIV 515042 . G A 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=0;QD=0.81;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,54:54:9:76,9,0 chrIV 515045 . A T 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.23;MQ0=0;QD=0.80;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,56:56:9:77,9,0 chrIV 515063 . C T 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=0.60;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:9:73,9,0 chrIV 515064 . T C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=0.92;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:12:95,12,0 chrIV 515069 . T A 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=2;QD=0.99;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:1,72:73:12:105,12,0 chrIV 515072 . G A 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=17.75;MQ0=3;QD=0.94;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,72:73:12:101,12,0 chrIV 515084 . G A 70.51 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=16.78;MQ0=7;QD=0.88;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:0,79:80:12:103,12,0 chrIV 515402 . A G 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;DP=194;Dels=0.00;FS=9.422;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=30;MQRankSum=3.682;QD=1.05;ReadPosRankSum=-1.232;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,87:194:99:233,0,205 chrIV 515436 . T C 564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-8.112;DP=252;Dels=0.00;FS=27.065;HaplotypeScore=16.5211;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=78;MQRankSum=7.094;QD=2.24;ReadPosRankSum=0.812;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:89,162:252:50:597,50,0 chrIV 515468 . C T 297 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.43;MQ0=90;QD=2.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:104:36:330,36,0 chrIV 515675 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=2;QD=3.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:6:6:51,6,0 chrIV 515684 . C T 51.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=11.83;MQ0=6;QD=2.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:9:84,9,0 chrIV 515741 . C T 132.13 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=10.17;MQ0=21;QD=2.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:18:165,18,0 chrIV 515807 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.83;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:73,9,0 chrIV 515811 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.36;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:53,6,0 chrIV 515813 . C A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.96;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:56,6,0 chrIV 515846 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.70;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrIV 518948 . G A 1441 filter AC=2;AF=1.00;AN=2;DP=254;Dels=0.00;FS=0.000;HaplotypeScore=2.4546;MLEAC=2;MLEAF=1.00;MQ=13.17;MQ0=139;QD=5.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,254:254:99:1474,162,0 chrIV 518969 . A G 1050 filter AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=14.09;MQ0=97;QD=5.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,199:200:99:1083,123,0 chrIV 518970 . C T 982 filter AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=14.05;MQ0=91;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:1015,114,0 chrIV 519251 . A G 438 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.03;MQ0=137;QD=2.45;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:1,178:179:54:471,54,0 chrIV 519268 . T A 1046 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=255;Dels=0.00;FS=23.620;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=14.59;MQ0=154;MQRankSum=7.517;QD=4.10;ReadPosRankSum=-2.354;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:149,105:255:99:1079,117,0 chrIV 519322 . T A 2388 filter AC=2;AF=1.00;AN=2;DP=324;Dels=0.00;FS=0.000;HaplotypeScore=10.4945;MLEAC=2;MLEAF=1.00;MQ=17.55;MQ0=111;QD=7.37;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,164:324:99:2421,267,0 chrIV 519390 . A G 124.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=19;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=8;MQRankSum=1.423;QD=6.53;ReadPosRankSum=0.791;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:9,10:19:18:157,18,0 chrIV 519681 . T C 441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;MQRankSum=0.462;QD=14.70;ReadPosRankSum=1.617;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:54:474,54,0 chrIV 519713 . C G 787 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=20.71;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:820,93,0 chrIV 519843 . C T 153.06 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=6.12;SB=-1.031e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:186,21,0 chrIV 519852 . C T 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=32.00;MQ0=0;QD=7.05;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:181,21,0 chrIV 519856 . A G 116.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=18;Dels=0.00;FS=21.847;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;MQRankSum=-0.773;QD=6.45;ReadPosRankSum=2.178;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:2,16:18:18:149,18,0 chrIV 519858 . T C 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=7.13;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:147,18,0 chrIV 519859 . A G 111.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=6.95;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:144,18,0 chrIV 519882 . T C 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=6.94;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:123,15,0 chrIV 519884 . C A 91.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;MQRankSum=-1.470;QD=7.02;ReadPosRankSum=1.203;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:124,15,0 chrIV 519890 . C T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=7.25;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:127,15,0 chrIV 519895 . T C 91.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=7.02;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:124,15,0 chrIV 519898 . T G 85.26 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=6.56;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:118,15,0 chrIV 519923 . A C 114.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.71;SB=-1.671e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:18:147,18,0 chrIV 519954 . A G 445 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=13.09;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:57:478,57,0 chrIV 519960 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=13.11;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:531,63,0 chrIV 520004 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.55;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1558,171,0 chrIV 520031 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=16.11;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1402,162,0 chrIV 520078 . A G 720 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=58.2470;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=9.73;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:84:753,84,0 chrIV 520108 . A G 467 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=8.65;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:54:57:500,57,0 chrIV 520115 . T C 623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;MQRankSum=1.588;QD=12.98;ReadPosRankSum=1.660;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:75:656,75,0 chrIV 520188 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=22.09;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1248,144,0 chrIV 520212 . A G 1025 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=20.92;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1058,126,0 chrIV 520246 . G A 761 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=15.53;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:794,90,0 chrIV 520247 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=16.55;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:811,93,0 chrIV 520264 . A C 758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;MQRankSum=1.283;QD=14.04;ReadPosRankSum=1.668;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:93:791,93,0 chrIV 520313 . A G 1561 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=16.61;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1594,183,0 chrIV 520356 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=17.42;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2106,237,0 chrIV 520389 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=21.30;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2546,282,0 chrIV 520474 . C G 526 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=16.44;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:559,63,0 chrIV 520839 . C T 174.03 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=7.57;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:207,24,0 chrIV 520841 . T A 181.03 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=7.87;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:214,24,0 chrIV 520893 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=20.59;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:81:692,81,0 chrIV 520937 . A G 764 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;MQRankSum=-0.866;QD=17.36;ReadPosRankSum=1.417;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:93:797,93,0 chrIV 520940 . G A 820 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=20.50;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:853,96,0 chrIV 520944 . G T 826 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=19.21;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:859,102,0 chrIV 521102 . C T 959 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=50.1240;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=16.53;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:992,108,0 chrIV 521218 . C A 291 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=9.39;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:324,39,0 chrIV 521219 . C T 315 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=10.16;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:348,39,0 chrIV 521260 . G A 136.06 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=12.8607;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.00;SB=-1.931e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:169,21,0 chrIV 521409 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.49;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1160,129,0 chrIV 521481 . A G 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=54;Dels=0.00;FS=4.455;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.275;QD=21.11;ReadPosRankSum=0.948;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1173,135,0 chrIV 521536 . A G 915 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.28;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:948,108,0 chrIV 521623 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.46;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1664,183,0 chrIV 521666 . C A 1839 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.96;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1872,201,0 chrIV 521737 . G T 2814 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0757;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.54;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2847,321,0 chrIV 521777 . T C 2869 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7219;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.52;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2902,330,0 chrIV 522274 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0380;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=21.92;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2619,306,0 chrIV 522328 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=23.00;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2379,261,0 chrIV 522598 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7803;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=17.05;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1738,189,0 chrIV 522610 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=17.25;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1396,159,0 chrIV 522622 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=14.45;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1189,144,0 chrIV 522628 . C A 1260 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=15.37;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1293,141,0 chrIV 522640 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=12.76;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:990,114,0 chrIV 522655 . C A 1135 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=15.13;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1168,126,0 chrIV 522661 . C G 1074 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=14.51;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1107,123,0 chrIV 522691 . A G 1394 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.197;QD=15.84;ReadPosRankSum=1.693;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1427,159,0 chrIV 522706 . T C 1425 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=15.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1458,165,0 chrIV 522718 . G A 1460 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=18.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1493,159,0 chrIV 522727 . G A 1350 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=16.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1383,156,0 chrIV 522733 . G A 1496 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=17.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1529,168,0 chrIV 522742 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=17.17;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1458,159,0 chrIV 522793 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.39;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1265,147,0 chrIV 522835 . T A 1119 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=16.70;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1152,132,0 chrIV 522853 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=16.11;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:951,108,0 chrIV 522860 . T A 890 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=16.48;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:923,105,0 chrIV 522889 . A C 635 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=15.49;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:81:668,81,0 chrIV 522913 . G A 387 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=12.09;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,31:32:48:420,48,0 chrIV 522922 . A G 366 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=13.8387;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=-0.449;QD=13.56;ReadPosRankSum=1.605;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:45:399,45,0 chrIV 522969 . C A 130.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=16.27;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:163,18,0 chrIV 523005 . C T 62.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=9.00;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:95,9,0 chrIV 523017 . C T 46.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.83;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:79,9,0 chrIV 523034 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=8.9005;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=-2.239;QD=1.09;ReadPosRankSum=-2.239;SB=1.24 GT:AD:DP:GQ:PL 1/1:9,2:11:6:43,6,0 chrIV 523042 . T C 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=8.9005;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=8.93;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:149,18,0 chrIV 523047 . A T 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=5.04;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:98,12,0 chrIV 523048 . A T 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=4.89;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:96,12,0 chrIV 523054 . A T 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.13;SB=-2.252e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:94,12,0 chrIV 523058 . C T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.45;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:70,9,0 chrIV 523059 . T A 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.45;SB=-2.296e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:70,9,0 chrIV 523083 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=2.60;SB=-1.659e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:9:71,9,0 chrIV 523087 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=2.53;SB=-1.629e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:9:70,9,0 chrIV 523092 . T G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=2.53;SB=-1.639e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:9:70,9,0 chrIV 523113 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=0.80;SB=-1.597e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:6:43,6,0 chrIV 523370 . C T 82.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=13.71;SB=-4.976e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:115,15,0 chrIV 523401 . T C 292 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=18.25;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:325,42,0 chrIV 523418 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=18.56;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:330,42,0 chrIV 523433 . G C 285 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=17.81;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:42:318,42,0 chrIV 523459 . A C 192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;MQRankSum=-1.159;QD=16.00;ReadPosRankSum=1.448;SB=-1.139e+02 GT:AD:DP:GQ:PL 1/1:1,11:12:30:225,30,0 chrIV 523471 . G A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:12:87,12,0 chrIV 523478 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 523481 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 523486 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 523487 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrIV 523505 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 523529 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 523712 . G A 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:72,9,0 chrIV 523715 . T C 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:70,9,0 chrIV 523718 . A G 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.49;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:70,9,0 chrIV 523730 . T C 35.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:68,9,0 chrIV 523733 . C T 39.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:72,9,0 chrIV 523741 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=10.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:75,9,0 chrIV 523754 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=9.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:4:9:71,9,0 chrIV 523769 . A G 59.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=11.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:92,12,0 chrIV 523781 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523783 . C A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.59;SB=-2.247e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrIV 523784 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.59;SB=-2.247e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrIV 523790 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523796 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523801 . G T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523802 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 523805 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.01;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 523826 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.01;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 523829 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.01;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 523833 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=2.01;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIV 523886 . C T 37.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=6.33;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:70,9,0 chrIV 523898 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;MQRankSum=0.742;QD=2.41;ReadPosRankSum=0.742;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:48,6,0 chrIV 523907 . T A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.14;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrIV 523913 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 523919 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrIV 524294 . G A 61.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=6.15;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:94,12,0 chrIV 524346 . T G 61.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=10.25;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,5:6:12:94,12,0 chrIV 524359 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=13.66;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrIV 525488 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:130,18,0 chrIV 525499 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:130,18,0 chrIV 525504 . C T 97.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:130,18,0 chrIV 525511 . G A 75.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=15.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:108,15,0 chrIV 525523 . C T 101.13 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=16.86;SB=-2.588e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:18:134,18,0 chrIV 525718 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIV 525793 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=6.28;SB=-7.447e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:76,9,0 chrIV 525805 . G A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=3.37;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 525814 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=3.37;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 525820 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.97;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrIV 525850 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=4.97;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:46,6,0 chrIV 525862 . A G 35.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=7.19;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:68,9,0 chrIV 525868 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.59;SB=-2.247e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrIV 525877 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 525883 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 525907 . C A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 525916 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=3.01;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:43,6,0 chrIV 525919 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 525923 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrIV 525967 . G A 65.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=5.46;SB=-4.945e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:12:98,12,0 chrIV 525976 . C T 121.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.57;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:154,18,0 chrIV 525988 . G A 152.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=8.94;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:21:185,21,0 chrIV 526042 . C T 225 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=9.38;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:258,30,0 chrIV 526063 . A G 145.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=9.07;SB=-4.907e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:178,21,0 chrIV 526072 . A T 71.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=5.96;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:104,12,0 chrIV 526087 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=4.77;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:75,9,0 chrIV 526117 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=1.72;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrIV 526135 . G A 121.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=10.09;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:154,18,0 chrIV 526183 . T C 234 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=10.17;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:33:267,33,0 chrIV 526186 . C T 214 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=9.73;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:247,30,0 chrIV 526215 . G A 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=5.81;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:149,18,0 chrIV 526219 . T C 106.13 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=0;QD=5.90;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,17:18:18:139,18,0 chrIV 526222 . G A 105.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=6.18;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:138,18,0 chrIV 526267 . T C 37.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.80;SB=-4.891e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:70,9,0 chrIV 526282 . T C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=5.28;SB=-4.772e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:69,9,0 chrIV 526285 . C T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=2.81;SB=-4.926e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:48,6,0 chrIV 526288 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;MQRankSum=0.747;QD=2.11;ReadPosRankSum=0.747;SB=-7.126e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:6:48,6,0 chrIV 526297 . T C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-1.044;QD=3.80;ReadPosRankSum=1.393;SB=-7.072e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:9:70,9,0 chrIV 526303 . C A 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=14;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.134;QD=4.75;ReadPosRankSum=-0.134;SB=-7.945e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:12:99,12,0 chrIV 526354 . G A 612 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=16.11;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:645,78,0 chrIV 526357 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=17.68;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:705,81,0 chrIV 526372 . T C 709 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=16.49;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:742,90,0 chrIV 526420 . T C 650 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=17.57;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:683,81,0 chrIV 526456 . C T 485 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=20.21;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:60:518,60,0 chrIV 526480 . C T 178.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.34;MQ0=0;QD=13.69;SB=-9.699e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:211,27,0 chrIV 526483 . T G 145.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=11.16;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:178,24,0 chrIV 526492 . T C 122.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;MQRankSum=-1.542;QD=6.78;ReadPosRankSum=1.542;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:21:155,21,0 chrIV 526495 . T C 173.01 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=9.11;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:206,27,0 chrIV 526558 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=0.717;QD=17.47;ReadPosRankSum=1.673;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1064,126,0 chrIV 526591 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=17.22;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:911,108,0 chrIV 526594 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=15.82;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:840,102,0 chrIV 526633 . C T 298 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=0;QD=10.28;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:331,42,0 chrIV 526636 . C T 244 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=0;QD=8.71;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:277,36,0 chrIV 526651 . A G 142.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;MQRankSum=0.520;QD=7.10;ReadPosRankSum=1.561;SB=-1.251e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:21:175,21,0 chrIV 526657 . G A 123.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=6.48;SB=-1.311e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:18:156,18,0 chrIV 526669 . T C 122.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=6.43;SB=-1.541e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:18:155,18,0 chrIV 526675 . C T 127.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=7.06;SB=-1.661e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:18:160,18,0 chrIV 526687 . T C 169.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.45;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:202,24,0 chrIV 526693 . A G 193.01 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=7.72;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:27:226,27,0 chrIV 526699 . A C 164.03 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=6.56;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:24:197,24,0 chrIV 526727 . A G 251 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=10.04;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:284,33,0 chrIV 526734 . T C 217.01 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=9.04;SB=-9.102e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:27:250,27,0 chrIV 526741 . C T 189.01 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=7.56;SB=-8.902e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:27:222,27,0 chrIV 526747 . A G 205.01 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=7.89;SB=-9.202e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:27:238,27,0 chrIV 526763 . C T 306 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=0;QD=10.93;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:339,39,0 chrIV 526783 . A G 226 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=11.89;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:259,30,0 chrIV 526795 . C T 218 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=12.11;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:30:251,30,0 chrIV 526810 . T C 222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=21;Dels=0.00;FS=18.228;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;MQRankSum=1.457;QD=10.57;ReadPosRankSum=2.663;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:3,18:21:33:255,33,0 chrIV 526837 . T C 331 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=16.55;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:48:364,48,0 chrIV 526840 . C T 364 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=0;QD=18.20;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:397,51,0 chrIV 526864 . A G 492 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=18.22;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:525,66,0 chrIV 526882 . T C 481 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=0;QD=17.81;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:514,63,0 chrIV 526888 . G T 491 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=16.37;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:524,66,0 chrIV 526918 . A T 485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=0.809;QD=16.17;ReadPosRankSum=1.617;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:66:518,66,0 chrIV 526927 . G A 519 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;QD=16.22;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:552,69,0 chrIV 526942 . C A 400 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=0;QD=14.81;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:433,54,0 chrIV 526957 . C T 639 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=17.75;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:672,81,0 chrIV 526978 . A G 776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;MQRankSum=0.609;QD=20.42;ReadPosRankSum=1.639;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,36:38:96:809,96,0 chrIV 527002 . A G 619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;MQRankSum=1.617;QD=19.97;ReadPosRankSum=1.617;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,29:31:75:652,75,0 chrIV 527050 . T C 176.01 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;QD=13.54;SB=-1.008e+02 GT:AD:DP:GQ:PL 1/1:0,12:13:27:209,27,0 chrIV 527056 . T C 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=0;QD=13.88;SB=-4.888e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:18:130,18,0 chrIV 527057 . C T 97.13 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=16.19;SB=-2.188e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:18:130,18,0 chrIV 527080 . T C 75.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=15.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:108,15,0 chrIV 527095 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrIV 527149 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIV 527179 . T C 127.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=11.55;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:160,21,0 chrIV 527206 . A G 177.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.556;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;MQRankSum=-1.480;QD=11.06;ReadPosRankSum=2.153;SB=2.99 GT:AD:DP:GQ:PL 1/1:3,13:16:27:210,27,0 chrIV 527210 . A C 177.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.691;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;MQRankSum=-1.749;QD=11.06;ReadPosRankSum=2.153;SB=2.99 GT:AD:DP:GQ:PL 1/1:3,13:16:27:210,27,0 chrIV 527217 . C A 180.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.556;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;MQRankSum=-1.883;QD=11.25;ReadPosRankSum=2.556;SB=2.99 GT:AD:DP:GQ:PL 1/1:3,13:16:27:213,27,0 chrIV 527222 . A C 175.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=13.46;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:208,27,0 chrIV 527227 . T G 173.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=17.30;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:206,27,0 chrIV 527236 . A G 173.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=17.30;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:27:206,27,0 chrIV 527249 . A G 153.03 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=19.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:24:186,24,0 chrIV 527253 . T C 134.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=16.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:21:167,21,0 chrIV 527269 . G A 111.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=18.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:144,18,0 chrIV 527271 . G A 110.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=18.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:143,18,0 chrIV 527809 . G A 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.38;MQ0=0;QD=7.79;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:87,12,0 chrIV 527829 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=0;QD=5.50;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrIV 527839 . G A 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrIV 527845 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=8.24;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:65,9,0 chrIV 528028 . T G 32.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=10.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:65,9,0 chrIV 528043 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=0;QD=9.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrIV 528052 . A G 54.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=0;QD=9.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrIV 528070 . C T 32.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.12;MQ0=0;QD=6.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:65,9,0 chrIV 528112 . A G 32.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=0;QD=5.50;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:65,9,0 chrIV 537808 . G C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrIV 537811 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=-0.736;QD=2.81;ReadPosRankSum=0.736;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:48,6,0 chrIV 537817 . C T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=6.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:71,9,0 chrIV 537828 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=3.54;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:56,6,0 chrIV 537829 . G A 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:52,6,0 chrIV 537832 . T C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.12;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:73,9,0 chrIV 537838 . A G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=4.66;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:74,9,0 chrIV 537865 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.73;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:52,6,0 chrIV 537889 . C T 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.82;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:134,15,0 chrIV 537892 . T C 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.47;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:131,15,0 chrIV 537897 . T C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.12;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:12:98,12,0 chrIV 537913 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.50;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:82,9,0 chrIV 537934 . T C 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.200;QD=1.77;ReadPosRankSum=1.600;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,25:26:9:78,9,0 chrIV 537961 . A G 206.01 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.06;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:239,27,0 chrIV 537970 . T C 204.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.705;QD=5.51;ReadPosRankSum=2.317;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,35:37:27:237,27,0 chrIV 537976 . C T 274 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.68;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,40:41:33:307,33,0 chrIV 537994 . A G 232 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.04;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,46:46:30:265,30,0 chrIV 538009 . C T 352 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.04;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:42:385,42,0 chrIV 538030 . C G 275 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.85;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:36:308,36,0 chrIV 538039 . T G 180.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=3.75;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:24:213,24,0 chrIV 538042 . G A 158.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=3.23;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:21:191,21,0 chrIV 538047 . T A 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=2.22;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:15:137,15,0 chrIV 538048 . A T 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=2.20;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:15:136,15,0 chrIV 538051 . C T 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=1.99;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:15:132,15,0 chrIV 538054 . A G 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=1.99;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:15:134,15,0 chrIV 538057 . T C 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=1.57;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,57:57:15:122,15,0 chrIV 538066 . C T 46.97 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=0.92;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,51:51:9:79,9,0 chrIV 538069 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,50:51:9:80,9,0 chrIV 538082 . T C 43.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=0.94;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:9:76,9,0 chrIV 538120 . G T 125.13 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=2.36;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,53:53:18:158,18,0 chrIV 538141 . T A 361 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.45;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:45:394,45,0 chrIV 538156 . A G 302 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.74;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:335,39,0 chrIV 538159 . G A 283 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:36:316,36,0 chrIV 538162 . C A 306 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.933;QD=7.85;ReadPosRankSum=1.022;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,38:39:39:339,39,0 chrIV 538163 . G C 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.67;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:332,39,0 chrIV 538165 . G C 299 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.67;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:332,39,0 chrIV 538167 . T C 303 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.77;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:336,39,0 chrIV 538168 . A G 289 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.41;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:39:322,39,0 chrIV 538174 . A G 325 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=5.42;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,58:60:42:358,42,0 chrIV 538183 . G A 513 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.1204;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=8.14;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:60:546,60,0 chrIV 538221 . T C 894 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.8977;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=14.66;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:927,105,0 chrIV 538470 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=16.35;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:965,108,0 chrIV 538561 . T A 1898 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=20.19;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1931,210,0 chrIV 538587 . T A 1933 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.22;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1966,216,0 chrIV 538613 . T A 1224 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.75;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1257,138,0 chrIV 538707 . T A 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=3.522;HaplotypeScore=3.5271;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.348;QD=18.22;ReadPosRankSum=1.605;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:60:525,60,0 chrIV 538829 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.77;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1721,204,0 chrIV 538891 . G T 1122 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.00;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1155,129,0 chrIV 538990 . T G 1388 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.69;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1421,165,0 chrIV 539028 . G A 1002 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.65;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1035,123,0 chrIV 539136 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.59;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1989,219,0 chrIV 539195 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.87;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1769,195,0 chrIV 539207 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.05;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1748,198,0 chrIV 539468 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=18.25;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1730,198,0 chrIV 539648 . T G 2311 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.44;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2344,264,0 chrIV 539706 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.76;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2078,219,0 chrIV 539767 . C G 2117 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.76;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2150,246,0 chrIV 540063 . T A 1919 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.86;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1952,219,0 chrIV 540228 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.28;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1799,195,0 chrIV 540470 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.61;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1308,150,0 chrIV 540514 . A T 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.361;QD=19.70;ReadPosRankSum=1.670;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1136,123,0 chrIV 540593 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.00;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1375,159,0 chrIV 540984 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.35;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:99:994,111,0 chrIV 541415 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.20;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1898,204,0 chrIV 541548 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.17;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2002,228,0 chrIV 541567 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.192;QD=20.28;ReadPosRankSum=1.697;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2061,234,0 chrIV 541727 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=87;Dels=0.00;FS=2.910;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.845;QD=20.28;ReadPosRankSum=2.393;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1797,204,0 chrIV 541830 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.62;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1548,177,0 chrIV 541854 . G T 1364 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=18.94;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1397,156,0 chrIV 541868 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2757;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=16.03;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1123,129,0 chrIV 541985 . T A 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3789;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.755;QD=19.29;ReadPosRankSum=2.327;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1576,171,0 chrIV 542041 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.54;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1655,183,0 chrIV 542066 . T A 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=91;Dels=0.00;FS=3.033;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.340;QD=18.21;ReadPosRankSum=2.396;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1690,192,0 chrIV 542116 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.03;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2148,231,0 chrIV 542141 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.04;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1736,195,0 chrIV 542146 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DP=85;Dels=0.00;FS=5.492;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.428;QD=18.06;ReadPosRankSum=-0.550;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1568,158,0 chrIV 542170 . A T 890 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=13.69;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:923,105,0 chrIV 542225 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.80;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1468,168,0 chrIV 542283 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.00;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1356,144,0 chrIV 542914 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.75;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2252,240,0 chrIV 542989 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.622;QD=20.26;ReadPosRankSum=1.695;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1958,222,0 chrIV 543883 . T A 196.03 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=8.52;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:229,24,0 chrIV 544280 . T G 952 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=21.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:985,117,0 chrIV 544641 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=15.94;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1452,159,0 chrIV 545047 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=15.33;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1428,159,0 chrIV 545171 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.73;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2170,243,0 chrIV 545219 . G A 2627 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.25;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2660,285,0 chrIV 545314 . A G 1729 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=20.34;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1762,204,0 chrIV 545325 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=19.96;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1909,210,0 chrIV 545333 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=8.473;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=0.629;QD=17.17;ReadPosRankSum=2.396;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1630,186,0 chrIV 545374 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=14.58;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1579,180,0 chrIV 545379 . A C 1568 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=15.08;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1601,177,0 chrIV 545400 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=16.38;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1884,210,0 chrIV 545668 . A G 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=101;Dels=0.00;FS=2.596;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.737;QD=14.60;ReadPosRankSum=2.885;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:3,93:101:99:1508,174,0 chrIV 545669 . G C 1605 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=16.05;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1638,189,0 chrIV 546113 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.09;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1690,189,0 chrIV 546408 . G T 1194 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.06;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1227,138,0 chrIV 547241 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.48;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2396,261,0 chrIV 547526 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.03;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1553,174,0 chrIV 547556 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.48;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1429,156,0 chrIV 547830 . G C 1179 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.98;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1212,141,0 chrIV 547842 . A C 1206 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.45;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1239,141,0 chrIV 547975 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.276;QD=22.51;ReadPosRankSum=0.881;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2599,277,0 chrIV 548346 . C A 1780 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.00;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1813,198,0 chrIV 548658 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:933,102,0 chrIV 548809 . A G 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=7.533;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.477;QD=23.66;ReadPosRankSum=1.681;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1642,186,0 chrIV 548909 . A G 982 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.84;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1015,117,0 chrIV 549275 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.760;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.9748;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.182;QD=21.06;ReadPosRankSum=-0.669;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2434,261,0 chrIV 549856 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=16.72;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2089,225,0 chrIV 550499 . A G 1471 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1504,174,0 chrIV 550672 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.07;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2035,216,0 chrIV 550727 . A T 1689 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.19;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1722,186,0 chrIV 550893 . C G 1466 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.25;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1499,171,0 chrIV 551018 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.25;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1633,186,0 chrIV 551155 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.00;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1947,225,0 chrIV 551284 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=15.48;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1256,141,0 chrIV 551387 . C A 1965 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.26;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1998,228,0 chrIV 551587 . T C 1028 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.85;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1061,117,0 chrIV 551843 . G T 477 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=11.7068;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=8.22;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:60:510,60,0 chrIV 552354 . T C 644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=3.716;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.087;QD=16.10;ReadPosRankSum=1.559;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:78:677,78,0 chrIV 552645 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7089;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.45;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2547,285,0 chrIV 552735 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.96;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1550,174,0 chrIV 552762 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.83;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1483,162,0 chrIV 552763 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.86;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1485,162,0 chrIV 552943 . A C 1988 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.14;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2021,231,0 chrIV 553031 . G A 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=14.3290;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.624;QD=19.62;ReadPosRankSum=1.263;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1917,222,0 chrIV 553204 . A T 828 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=19.26;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:861,96,0 chrIV 553497 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=18.84;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1314,150,0 chrIV 553575 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=21.83;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1168,126,0 chrIV 553583 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=19.29;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1036,120,0 chrIV 553591 . A G 924 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.77;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:957,105,0 chrIV 553624 . G A 617 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=15.05;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:69:650,69,0 chrIV 553651 . G A 962 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=15.52;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:995,108,0 chrIV 553670 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.04;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1366,147,0 chrIV 553817 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.79;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1883,210,0 chrIV 553867 . C G 1365 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=17.73;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1398,156,0 chrIV 553868 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.33;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1402,153,0 chrIV 553883 . A G 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=12.740;HaplotypeScore=8.0894;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.120;QD=15.86;ReadPosRankSum=2.381;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1191,138,0 chrIV 553976 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.50;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1468,171,0 chrIV 554102 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.11;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1199,132,0 chrIV 554114 . C G 1046 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.15;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1079,126,0 chrIV 554456 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.15;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1429,162,0 chrIV 555214 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.65;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2003,234,0 chrIV 555283 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.16;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1303,147,0 chrIV 555346 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.68;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:899,96,0 chrIV 555362 . C T 668 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=13.36;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:78:701,78,0 chrIV 555365 . C A 660 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=14.04;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:693,75,0 chrIV 555379 . C T 487 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=11.60;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:520,57,0 chrIV 555381 . C G 532 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=12.98;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:565,63,0 chrIV 555425 . A C 880 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.00;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:913,102,0 chrIV 555524 . C A 344 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.64;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:377,42,0 chrIV 555588 . C T 409 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.78;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:51:442,51,0 chrIV 556732 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.11;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1050,117,0 chrIV 556934 . A C 1361 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.27;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1394,159,0 chrIV 557054 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=23.37;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2814,318,0 chrIV 557161 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.329;QD=18.18;ReadPosRankSum=1.644;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1469,168,0 chrIV 557899 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=3.963;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.997;QD=18.50;ReadPosRankSum=1.601;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2494,285,0 chrIV 557923 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.051;DP=112;Dels=0.00;FS=10.985;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.368;QD=19.02;ReadPosRankSum=4.103;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:6,106:112:99:2163,246,0 chrIV 558180 . C T 495 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.69;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:57:528,57,0 chrIV 558895 . A G 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8201;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.514;QD=20.75;ReadPosRankSum=1.694;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1942,219,0 chrIV 558963 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.285;QD=20.57;ReadPosRankSum=1.658;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1946,225,0 chrIV 559132 . T A 861 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.65;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:894,96,0 chrIV 559236 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=12.6702;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=16.65;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1382,150,0 chrIV 559708 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.03;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1852,207,0 chrIV 559897 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.25;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2009,228,0 chrIV 559935 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.51;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1325,147,0 chrIV 560175 . A G 1987 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.37;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2020,228,0 chrIV 560449 . A G 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.632;QD=20.07;ReadPosRankSum=1.651;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1739,192,0 chrIV 560536 . T A 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.97;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,162,0 chrIV 560715 . G A 879 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.93;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:912,102,0 chrIV 561251 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=20.27;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:93:844,93,0 chrIV 561304 . T C 1131 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.50;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1164,132,0 chrIV 562925 . A G 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=10.4007;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.787;QD=19.85;ReadPosRankSum=1.669;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1125,126,0 chrIV 562970 . G T 1020 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=7.4284;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=17.59;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1053,114,0 chrIV 562989 . G C 811 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=16.22;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:844,96,0 chrIV 563010 . C T 268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=42.5987;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;MQRankSum=-1.237;QD=5.25;ReadPosRankSum=1.167;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:39:301,39,0 chrIV 563017 . A T 518 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=42.5987;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=8.93;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:63:551,63,0 chrIV 563021 . G A 543 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=45.0410;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=8.35;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:66:576,66,0 chrIV 563080 . C A 980 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=15.31;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1013,117,0 chrIV 563209 . G C 568 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.23;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:601,69,0 chrIV 563218 . G T 642 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.34;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:675,75,0 chrIV 563468 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.63;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1730,192,0 chrIV 564225 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.68;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1616,180,0 chrIV 564360 . T C 1209 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.27;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1242,144,0 chrIV 564366 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.50;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1287,144,0 chrIV 564745 . G A 657 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.77;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:78:690,78,0 chrIV 564823 . G A 945 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.18;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:978,108,0 chrIV 564879 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.77;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1321,144,0 chrIV 564904 . T C 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=6.734;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.525;QD=19.03;ReadPosRankSum=1.680;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1289,144,0 chrIV 564993 . T C 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.094;QD=23.78;ReadPosRankSum=1.669;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1341,147,0 chrIV 565245 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.77;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1965,225,0 chrIV 565313 . C T 1924 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.24;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1957,219,0 chrIV 565317 . T G 1842 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5354;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=18.61;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1875,213,0 chrIV 565322 . A G 1694 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5354;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=18.41;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1727,198,0 chrIV 565468 . A G 1544 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.38;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1577,180,0 chrIV 565653 . G T 1748 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=15.61;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1781,201,0 chrIV 565654 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=15.32;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1749,201,0 chrIV 565705 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=16.68;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1768,201,0 chrIV 565899 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8499;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.15;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2469,276,0 chrIV 566007 . A G 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.033;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=-0.577;QD=16.23;ReadPosRankSum=1.689;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1348,150,0 chrIV 566010 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.58;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1326,144,0 chrIV 566055 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.15;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2048,231,0 chrIV 566376 . A G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.148;QD=21.71;ReadPosRankSum=1.654;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1965,225,0 chrIV 566726 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.97;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1627,174,0 chrIV 566869 . G C 1728 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.15;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1761,201,0 chrIV 567267 . A G 1988 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.38;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2021,231,0 chrIV 567364 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.11;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1868,207,0 chrIV 567805 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.56;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1206,135,0 chrIV 568017 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.75;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2149,237,0 chrIV 568131 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.74;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1464,168,0 chrIV 568816 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.96;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2260,246,0 chrIV 568863 . G A 1150 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.49;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1183,135,0 chrIV 568871 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.83;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1137,126,0 chrIV 569958 . G T 672 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:705,78,0 chrIV 570106 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.23;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1543,168,0 chrIV 570139 . T A 1515 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.44;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1548,168,0 chrIV 570168 . T C 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.6549;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.058;QD=20.78;ReadPosRankSum=1.675;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1280,144,0 chrIV 570408 . G A 861 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.57;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:894,99,0 chrIV 571144 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.40;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1959,213,0 chrIV 571737 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.67;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1095,126,0 chrIV 571806 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.80;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1221,141,0 chrIV 572185 . G C 2174 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.41;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2207,249,0 chrIV 572492 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.39;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2001,216,0 chrIV 572610 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.39;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1063,120,0 chrIV 572800 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.41;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1691,180,0 chrIV 572826 . C T 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.00;FS=5.016;HaplotypeScore=6.5731;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=0.356;QD=19.81;ReadPosRankSum=-0.593;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1499,165,0 chrIV 573174 . A G 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=2.946;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.833;QD=17.87;ReadPosRankSum=2.401;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1856,210,0 chrIV 573177 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.47;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1797,213,0 chrIV 573702 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.58;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1352,156,0 chrIV 573767 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.080;DP=72;Dels=0.00;FS=8.295;HaplotypeScore=8.3885;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=-0.511;QD=19.54;ReadPosRankSum=3.304;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:4,67:72:99:1440,168,0 chrIV 573826 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=11.0899;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.32;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1565,171,0 chrIV 573928 . A G 914 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.31;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:947,108,0 chrIV 573950 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.33;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1023,114,0 chrIV 574093 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1980,225,0 chrIV 574445 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.25;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2413,273,0 chrIV 574619 . C T 2522 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.72;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2555,285,0 chrIV 574753 . T C 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.825;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.634;QD=15.63;ReadPosRankSum=1.648;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1315,150,0 chrIV 574804 . G C 2013 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.99;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2046,228,0 chrIV 574934 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.92;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2046,231,0 chrIV 574968 . G C 1855 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.71;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1888,216,0 chrIV 574970 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.53;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2090,225,0 chrIV 574989 . A G 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=107;Dels=0.00;FS=5.306;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-1.782;QD=16.94;ReadPosRankSum=3.374;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:4,102:107:99:1846,210,0 chrIV 575468 . A C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=98;Dels=0.00;FS=2.974;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.050;QD=16.55;ReadPosRankSum=2.346;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,93:98:99:1655,192,0 chrIV 575552 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.67;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2353,255,0 chrIV 575774 . G A 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=84;Dels=0.00;FS=4.719;HaplotypeScore=6.2297;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.397;QD=15.89;ReadPosRankSum=0.355;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1368,156,0 chrIV 575833 . A T 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.319;QD=19.29;ReadPosRankSum=2.374;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1943,222,0 chrIV 575834 . C A 1966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.86;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1999,225,0 chrIV 575887 . A T 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.545;QD=21.19;ReadPosRankSum=1.700;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2321,252,0 chrIV 575938 . C G 1499 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1532,174,0 chrIV 576025 . C A 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.074;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4966;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.015;QD=12.94;ReadPosRankSum=2.163;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:99:939,102,0 chrIV 576258 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.09;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1227,138,0 chrIV 576308 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.56;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1246,141,0 chrIV 576373 . A G 1864 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.46;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1897,213,0 chrIV 576434 . A G 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-1.073;QD=14.92;ReadPosRankSum=1.073;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:92:943,92,0 chrIV 576472 . T A 360 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=9.00;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:393,42,0 chrIV 576497 . C A 365 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=7.45;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:45:398,45,0 chrIV 576503 . G T 417 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=8.51;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:51:450,51,0 chrIV 576577 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.3922;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.74;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1045,111,0 chrIV 577940 . G T 1599 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.04;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1632,177,0 chrIV 578168 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1230,141,0 chrIV 578566 . T A 844 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.10;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:877,96,0 chrIV 578638 . T C 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.331;QD=22.12;ReadPosRankSum=2.362;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1272,144,0 chrIV 578649 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.64;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1278,144,0 chrIV 578728 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.97;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1451,171,0 chrIV 578805 . A T 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.674;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.354;QD=22.13;ReadPosRankSum=1.693;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2003,216,0 chrIV 578841 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.44;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1855,201,0 chrIV 578941 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.50;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1254,141,0 chrIV 579199 . C A 1575 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.94;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1608,171,0 chrIV 579222 . A T 1114 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=17.97;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1147,126,0 chrIV 579531 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.22;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1766,192,0 chrIV 579755 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.60;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1722,198,0 chrIV 579762 . A C 1677 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.96;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1710,189,0 chrIV 579813 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.20;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1580,180,0 chrIV 579859 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.43;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1765,195,0 chrIV 579869 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.94;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1719,192,0 chrIV 579879 . A G 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.830;QD=17.90;ReadPosRankSum=1.624;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1769,204,0 chrIV 579940 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.64;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1897,204,0 chrIV 580006 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=16.03;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:1924,219,0 chrIV 580011 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=115;Dels=0.00;FS=2.922;HaplotypeScore=5.9165;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.211;QD=16.43;ReadPosRankSum=2.405;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,109:115:99:1922,219,0 chrIV 580119 . G C 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.08;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1888,213,0 chrIV 580191 . T C 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=5.254;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.003;QD=17.96;ReadPosRankSum=1.672;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1057,120,0 chrIV 580230 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.89;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1035,120,0 chrIV 580374 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=17.09;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1212,138,0 chrIV 580820 . T A 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=11.7583;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.591;QD=19.08;ReadPosRankSum=1.690;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1617,177,0 chrIV 580899 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.93;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1585,180,0 chrIV 580902 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.37;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1621,174,0 chrIV 580961 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=9.93;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:69:609,69,0 chrIV 580972 . A G 541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=5.582;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=-1.585;QD=11.51;ReadPosRankSum=1.659;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:63:574,63,0 chrIV 580995 . T G 548 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=9.96;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:581,66,0 chrIV 581004 . A C 554 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=9.72;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:66:587,66,0 chrIV 581091 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.46;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1471,159,0 chrIV 581181 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5109;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.16;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1850,213,0 chrIV 581371 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.90;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1538,174,0 chrIV 581400 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.97;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1461,165,0 chrIV 581467 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.11;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1448,159,0 chrIV 581521 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.40;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1449,156,0 chrIV 581581 . C A 1185 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1218,138,0 chrIV 581857 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.22;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1788,207,0 chrIV 581897 . A C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=90;Dels=0.00;FS=3.713;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.732;QD=18.22;ReadPosRankSum=1.613;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,86:90:99:1673,195,0 chrIV 582085 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.33;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1591,180,0 chrIV 582132 . G T 1990 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.14;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2023,219,0 chrIV 582466 . T G 1130 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1163,135,0 chrIV 582902 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1354,156,0 chrIV 583013 . A G 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=4.181;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.480;QD=20.93;ReadPosRankSum=1.669;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1205,138,0 chrIV 583094 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.03;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1379,156,0 chrIV 583237 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.99;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1609,171,0 chrIV 583433 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.90;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1842,210,0 chrIV 583765 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.58;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1325,144,0 chrIV 583767 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=6.660;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-1.563;QD=17.97;ReadPosRankSum=2.219;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1183,138,0 chrIV 583925 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.96;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1710,189,0 chrIV 583943 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.44;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1568,177,0 chrIV 584012 . T C 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=6.491;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.166;QD=20.93;ReadPosRankSum=2.376;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1435,165,0 chrIV 584134 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.49;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1513,174,0 chrIV 584237 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.40;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1643,186,0 chrIV 584255 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.54;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1821,198,0 chrIV 584423 . A C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=6.064;HaplotypeScore=7.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.698;QD=23.65;ReadPosRankSum=1.664;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2422,276,0 chrIV 584534 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.46;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1235,135,0 chrIV 584551 . T C 1087 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.51;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1120,129,0 chrIV 584819 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.22;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1417,162,0 chrIV 584903 . T A 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.193;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.542;QD=21.67;ReadPosRankSum=1.685;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1615,174,0 chrIV 585317 . T C 1572 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1605,186,0 chrIV 585358 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.12;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1677,183,0 chrIV 585389 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=15.15;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1109,126,0 chrIV 585467 . A G 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.051;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.541;QD=19.70;ReadPosRankSum=1.678;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1294,147,0 chrIV 585476 . C G 1299 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.98;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1332,150,0 chrIV 585554 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.19;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1426,156,0 chrIV 585872 . T C 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.545;QD=20.26;ReadPosRankSum=1.545;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2322,267,0 chrIV 586061 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.90;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2289,252,0 chrIV 586241 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.03;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1872,213,0 chrIV 586361 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.60;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:2600,300,0 chrIV 586700 . A G 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.462;QD=18.41;ReadPosRankSum=1.694;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1690,201,0 chrIV 586725 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.60;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1993,228,0 chrIV 586742 . C G 1878 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.87;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1911,213,0 chrIV 586820 . T C 1045 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.42;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1078,123,0 chrIV 586838 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.38;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1246,141,0 chrIV 587113 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.90;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1921,213,0 chrIV 587150 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.13;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1529,171,0 chrIV 587347 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1968,225,0 chrIV 587864 . C T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;DP=73;Dels=0.00;FS=66.458;HaplotypeScore=3.3829;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-0.256;QD=1.75;ReadPosRankSum=-4.477;SB=0.782 GT:AD:DP:GQ:PL 0/1:46,27:73:99:158,0,347 chrIV 588058 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.62;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1930,216,0 chrIV 588140 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.96;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1909,210,0 chrIV 588381 . A T 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=1.039;QD=20.13;ReadPosRankSum=1.696;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1945,210,0 chrIV 588386 . A G 1811 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.47;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1844,210,0 chrIV 588509 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.066;QD=19.85;ReadPosRankSum=2.338;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1343,150,0 chrIV 588583 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.65;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1040,117,0 chrIV 588705 . G T 1367 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.99;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1400,153,0 chrIV 588710 . G C 1358 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.35;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1391,162,0 chrIV 589025 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.48;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1159,126,0 chrIV 589061 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.39;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:951,102,0 chrIV 589440 . T C 513 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.03;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,31:32:63:546,63,0 chrIV 589449 . G A 543 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.10;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:63:576,63,0 chrIV 589460 . T C 577 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.03;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:610,69,0 chrIV 589510 . A T 724 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.10;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:81:757,81,0 chrIV 589613 . C T 247 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.8680;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=9.15;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:33:280,33,0 chrIV 589643 . T G 154.06 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=9.7253;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=6.70;SB=-5.307e+01 GT:AD:DP:GQ:PL 1/1:0,22:23:21:187,21,0 chrIV 589702 . C G 167.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=7.59;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:24:200,24,0 chrIV 589875 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.22;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:922,102,0 chrIV 589920 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.50;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:99:1058,123,0 chrIV 590018 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.31;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1738,201,0 chrIV 590019 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.74;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1772,207,0 chrIV 590058 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.27;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1604,183,0 chrIV 590081 . T C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=3.023;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.954;QD=18.98;ReadPosRankSum=2.391;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1627,183,0 chrIV 590328 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.963;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.174;QD=16.00;ReadPosRankSum=2.387;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1281,150,0 chrIV 590403 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.43;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1490,168,0 chrIV 590540 . T C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.443;QD=20.61;ReadPosRankSum=1.691;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1764,201,0 chrIV 590603 . G T 1497 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5199;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.41;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1530,171,0 chrIV 590639 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8235;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.01;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1854,198,0 chrIV 590870 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.91;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1786,201,0 chrIV 590898 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.25;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1785,204,0 chrIV 591021 . A G 2501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=112;Dels=0.00;FS=13.954;HaplotypeScore=12.1742;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.619;QD=22.33;ReadPosRankSum=3.379;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:4,108:112:99:2534,288,0 chrIV 591129 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.694;QD=20.05;ReadPosRankSum=1.694;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:2,89:93:99:1898,219,0 chrIV 591187 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.80;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1843,210,0 chrIV 591205 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.52;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1857,204,0 chrIV 591234 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.39;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1616,180,0 chrIV 591737 . T C 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;MQRankSum=0.091;QD=20.26;ReadPosRankSum=1.641;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:93:803,93,0 chrIV 592009 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.73;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1556,168,0 chrIV 592050 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.71;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1472,168,0 chrIV 592072 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.38;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1448,168,0 chrIV 592160 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.55;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2035,222,0 chrIV 592224 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.03;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1241,144,0 chrIV 593211 . A C 1044 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=60.8900;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=15.35;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1077,123,0 chrIV 593254 . T A 1433 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=74.4211;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=15.58;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1466,165,0 chrIV 593313 . G A 920 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=13.53;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:953,102,0 chrIV 593316 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=13.28;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:883,102,0 chrIV 593409 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.96;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1290,141,0 chrIV 593410 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.96;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1290,147,0 chrIV 593463 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.98;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1112,132,0 chrIV 593517 . T G 1760 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.86;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1793,201,0 chrIV 593642 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.4406;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.18;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1748,198,0 chrIV 593760 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.72;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2163,240,0 chrIV 593816 . T A 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.194;QD=23.06;ReadPosRankSum=1.698;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2431,273,0 chrIV 594035 . T A 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=66;Dels=0.00;FS=4.046;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=19.20;ReadPosRankSum=1.680;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1300,147,0 chrIV 594150 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.515;QD=17.95;ReadPosRankSum=1.701;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2025,228,0 chrIV 594402 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=17.86;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1480,171,0 chrIV 594612 . T C 2032 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9765;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.92;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2065,231,0 chrIV 594738 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=16.12;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1226,138,0 chrIV 594777 . C G 1745 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.53;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1778,204,0 chrIV 594843 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.139;QD=20.75;ReadPosRankSum=1.653;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1880,210,0 chrIV 594975 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.40;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:990,111,0 chrIV 595029 . A G 739 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.02;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:772,87,0 chrIV 595047 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.82;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:906,102,0 chrIV 595104 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.11;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1122,120,0 chrIV 595122 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.82;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1106,120,0 chrIV 595269 . C G 929 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=16.89;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:962,108,0 chrIV 595275 . G T 938 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.75;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:971,105,0 chrIV 595314 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=15.86;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:826,90,0 chrIV 595528 . A G 1555 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=18.73;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1588,180,0 chrIV 595537 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0737;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=0.201;QD=17.51;ReadPosRankSum=1.692;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1539,177,0 chrIV 595579 . T C 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.176;QD=14.39;ReadPosRankSum=2.386;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1141,129,0 chrIV 595587 . T C 961 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=13.73;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:994,114,0 chrIV 595597 . G T 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.379;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;MQRankSum=0.515;QD=12.84;ReadPosRankSum=1.311;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:983,105,0 chrIV 595662 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.25;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1189,135,0 chrIV 595713 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.09;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1446,165,0 chrIV 596055 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9913;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.60;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1797,207,0 chrIV 596115 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.78;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2277,258,0 chrIV 596770 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.62;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1992,216,0 chrIV 596811 . T C 2515 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.61;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2548,294,0 chrIV 596817 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.77;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2588,294,0 chrIV 596913 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.12;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1505,165,0 chrIV 596987 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.15;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1683,186,0 chrIV 597058 . C T 816 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.32;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:90:849,90,0 chrIV 597096 . C T 898 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=56.2835;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=15.22;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:931,99,0 chrIV 597114 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=13.23;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:840,96,0 chrIV 597139 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=16.14;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1195,135,0 chrIV 597383 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.76;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1665,180,0 chrIV 597461 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.828;QD=22.59;ReadPosRankSum=2.382;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1682,189,0 chrIV 597488 . T C 1843 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.63;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1876,210,0 chrIV 597506 . T C 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.701;QD=21.17;ReadPosRankSum=1.608;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1811,210,0 chrIV 597668 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=2.868;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.244;QD=19.90;ReadPosRankSum=2.398;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1943,228,0 chrIV 597689 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.67;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1962,216,0 chrIV 597800 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.35;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1869,213,0 chrIV 598134 . A T 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.289;QD=20.82;ReadPosRankSum=1.696;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2032,234,0 chrIV 598184 . T G 1415 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.51;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1448,171,0 chrIV 598232 . C T 462 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.48;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:495,54,0 chrIV 598369 . A G 843 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.07;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:876,99,0 chrIV 598426 . A C 361 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.433;QD=13.88;ReadPosRankSum=2.261;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:2,24:26:48:394,48,0 chrIV 598569 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.65;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:577,63,0 chrIV 598593 . T C 609 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.00;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:642,72,0 chrIV 598655 . G A 456 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.54;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:489,51,0 chrIV 598656 . C T 434 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.07;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:51:467,51,0 chrIV 598729 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.97;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:752,81,0 chrIV 598749 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.42;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:840,93,0 chrIV 598956 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.28;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1523,174,0 chrIV 599029 . G C 1386 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2714;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.00;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1419,162,0 chrIV 599181 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1539,171,0 chrIV 599229 . T C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=75;Dels=0.00;FS=6.082;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.338;QD=20.27;ReadPosRankSum=2.879;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1553,177,0 chrIV 599314 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1657,183,0 chrIV 599388 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.92;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1395,159,0 chrIV 599409 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.03;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1589,183,0 chrIV 599654 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.70;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1486,159,0 chrIV 599820 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.87;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1444,168,0 chrIV 599964 . C G 2699 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.25;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2732,312,0 chrIV 600037 . T C 2747 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.33;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2780,321,0 chrIV 600120 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.748;QD=17.71;ReadPosRankSum=1.659;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1715,195,0 chrIV 600127 . T A 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=89;Dels=0.00;FS=6.480;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.658;QD=16.93;ReadPosRankSum=2.366;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1540,165,0 chrIV 600177 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.44;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2152,243,0 chrIV 600479 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=71.8221;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.70;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1689,189,0 chrIV 600632 . A G 825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.429;QD=16.18;ReadPosRankSum=2.350;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:2,47:51:96:858,96,0 chrIV 600722 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=0.394;QD=18.12;ReadPosRankSum=1.693;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1664,186,0 chrIV 600764 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=58.4345;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=16.10;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1176,126,0 chrIV 600792 . G T 809 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=12.45;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:842,93,0 chrIV 600978 . A T 1858 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.82;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1891,210,0 chrIV 601041 . A G 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=38.70;MQ0=0;MQRankSum=-2.713;QD=0.36;ReadPosRankSum=1.216;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:16,25:42:45:45,0,182 chrIV 601524 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8097;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.58;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2172,243,0 chrIV 601683 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1824,207,0 chrIV 602153 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.60;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2181,255,0 chrIV 602488 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.78;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1930,210,0 chrIV 602876 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.5879;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.05;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1612,177,0 chrIV 603005 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8653;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.24;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1612,180,0 chrIV 603439 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1227,144,0 chrIV 603579 . T A 1880 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.65;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1913,216,0 chrIV 603685 . T C 2931 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.02;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2964,336,0 chrIV 603743 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.03;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1575,186,0 chrIV 603839 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.65;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1684,186,0 chrIV 603991 . C A 4945.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.0907;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=24.00;SB=-2.063e+03 GT:AD:DP:GQ:PL 1/1:0,203:206:99:4945,531,0 chrIV 604105 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.019;QD=18.72;ReadPosRankSum=1.656;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1774,201,0 chrIV 604186 . C T 3003 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.83;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3036,324,0 chrIV 604439 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.46;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2446,267,0 chrIV 604645 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.31;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1942,219,0 chrIV 604670 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.66;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1287,153,0 chrIV 604674 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.64;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1321,144,0 chrIV 604841 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.66;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2140,243,0 chrIV 605187 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.968;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.283;QD=20.53;ReadPosRankSum=2.401;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:2,98:102:99:2127,243,0 chrIV 605312 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.56;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1413,153,0 chrIV 605501 . T C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.332;QD=19.90;ReadPosRankSum=1.697;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2043,234,0 chrIV 605558 . T C 1670 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.27;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1703,198,0 chrIV 605615 . G C 1317 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.37;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1350,156,0 chrIV 605618 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=18.96;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1379,156,0 chrIV 605973 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.51;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1136,123,0 chrIV 605980 . G C 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.89;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,135,0 chrIV 606896 . T C 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.867;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.829;QD=23.24;ReadPosRankSum=1.582;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1102,129,0 chrIV 606952 . T G 950 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.39;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:983,114,0 chrIV 607313 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.72;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1689,180,0 chrIV 607474 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.58;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2178,243,0 chrIV 607973 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.07;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1438,156,0 chrIV 608132 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.03;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1842,213,0 chrIV 608224 . T C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.091;QD=20.53;ReadPosRankSum=1.672;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1203,135,0 chrIV 608333 . T C 1029 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=17.44;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1062,120,0 chrIV 608348 . T A 1098 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=17.16;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1131,126,0 chrIV 608350 . T C 1206 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=17.74;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1239,141,0 chrIV 608354 . G A 1128 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=16.35;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1161,129,0 chrIV 608390 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.19;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1645,186,0 chrIV 608456 . T G 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.738;DP=117;Dels=0.00;FS=4.918;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.190;QD=20.89;ReadPosRankSum=3.766;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:5,111:117:99:2477,291,0 chrIV 608522 . T A 1525 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.55;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1558,177,0 chrIV 608546 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.06;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1405,159,0 chrIV 608616 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.58;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1754,192,0 chrIV 608768 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.69;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1855,213,0 chrIV 608921 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6725;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.68;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1470,165,0 chrIV 609172 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.8913;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.01;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:82:99:1510,171,0 chrIV 609209 . A T 2063 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2096,234,0 chrIV 609437 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.98;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1248,141,0 chrIV 609602 . A T 1459 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.99;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1492,168,0 chrIV 609926 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.28;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2175,246,0 chrIV 609953 . T G 1817 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.13;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1850,210,0 chrIV 610570 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3260;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.56;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1715,192,0 chrIV 610717 . A G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.121;QD=19.00;ReadPosRankSum=1.531;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1667,195,0 chrIV 610801 . A G 2243 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.16;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2276,261,0 chrIV 610896 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.76;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,84:88:99:2124,225,0 chrIV 611056 . A G 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=2.983;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.300;QD=20.46;ReadPosRankSum=2.344;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1465,165,0 chrIV 611082 . G C 1198 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=15.97;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1231,144,0 chrIV 611092 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=14.79;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1142,126,0 chrIV 611095 . A T 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=2.693;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-1.383;QD=14.28;ReadPosRankSum=2.350;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1090,117,0 chrIV 611172 . T A 2004 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.8591;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.56;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2037,225,0 chrIV 611178 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.3993;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.12;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2008,228,0 chrIV 611253 . G T 2496 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.97;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2529,273,0 chrIV 611282 . T C 2332 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0827;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.00;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2365,270,0 chrIV 611584 . A T 1935 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.37;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1968,219,0 chrIV 611602 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2339;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.17;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1850,207,0 chrIV 611678 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9986;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.16;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:95:99:2043,228,0 chrIV 611706 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.97;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1878,219,0 chrIV 611871 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.00;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1252,138,0 chrIV 611969 . G C 1215 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=16.42;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1248,147,0 chrIV 612078 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.03;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:832,90,0 chrIV 612085 . A G 888 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.66;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:921,105,0 chrIV 612294 . C T 667 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.82;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:700,78,0 chrIV 612323 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.63;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:920,99,0 chrIV 612573 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.42;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1211,135,0 chrIV 612828 . G T 1632 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1665,186,0 chrIV 613152 . T C 598 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.29;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:631,72,0 chrIV 613325 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.123;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.601;QD=19.27;ReadPosRankSum=4.276;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:7,56:63:99:1247,147,0 chrIV 613362 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=70.1751;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.24;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1723,198,0 chrIV 613386 . T G 1511 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.55;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1544,177,0 chrIV 613520 . T C 1027 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.34;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1060,123,0 chrIV 613630 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.00;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1265,144,0 chrIV 613738 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=17.96;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1290,141,0 chrIV 613744 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=17.29;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1399,162,0 chrIV 613810 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.466;QD=18.40;ReadPosRankSum=1.694;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1707,195,0 chrIV 613813 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.45;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1767,201,0 chrIV 613945 . T A 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.866;QD=20.83;ReadPosRankSum=1.678;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1387,150,0 chrIV 614005 . G C 808 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.24;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:841,96,0 chrIV 614045 . G T 841 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.56;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:874,96,0 chrIV 614064 . T C 839 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=16.13;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:872,99,0 chrIV 614093 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=67;Dels=0.00;FS=3.658;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.626;QD=19.03;ReadPosRankSum=1.572;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1308,147,0 chrIV 614223 . G T 1166 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.67;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1199,135,0 chrIV 614229 . T A 1280 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=21.33;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1313,141,0 chrIV 614241 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.23;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1206,135,0 chrIV 614280 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.501;DP=91;Dels=0.00;FS=5.497;HaplotypeScore=7.2905;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.522;QD=18.03;ReadPosRankSum=2.856;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1674,192,0 chrIV 614321 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.96;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2030,219,0 chrIV 614483 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.41;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1482,171,0 chrIV 614534 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.786;QD=22.65;ReadPosRankSum=2.387;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1800,204,0 chrIV 614594 . T C 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=86;Dels=0.00;FS=2.945;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.989;QD=21.49;ReadPosRankSum=2.393;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1881,213,0 chrIV 614618 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.94;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2205,249,0 chrIV 614940 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=16.49;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1468,168,0 chrIV 615095 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.64;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1532,174,0 chrIV 615114 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.10;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1561,171,0 chrIV 615161 . T A 1434 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1467,162,0 chrIV 615243 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.62;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1465,168,0 chrIV 615247 . T C 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=78;Dels=0.00;FS=12.727;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=-1.013;QD=17.49;ReadPosRankSum=2.832;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1397,159,0 chrIV 615258 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.676;QD=18.28;ReadPosRankSum=1.690;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1532,171,0 chrIV 615413 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.64;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1394,165,0 chrIV 615437 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.10;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1259,141,0 chrIV 615449 . A T 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.501;QD=21.18;ReadPosRankSum=1.617;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1304,144,0 chrIV 615581 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.95;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1341,144,0 chrIV 615630 . A C 1268 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.11;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1301,147,0 chrIV 615735 . C G 1299 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.62;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1332,153,0 chrIV 615816 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.90;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1384,150,0 chrIV 615959 . A G 759 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=16.15;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:792,90,0 chrIV 615973 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=15.22;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:870,99,0 chrIV 615975 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=14.62;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:881,96,0 chrIV 616214 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.20;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1143,126,0 chrIV 616434 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1692,189,0 chrIV 616559 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.05;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1462,162,0 chrIV 616624 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=15.99;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1696,189,0 chrIV 616689 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.33;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1939,219,0 chrIV 616883 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.12;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1522,174,0 chrIV 617153 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.07;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1139,129,0 chrIV 617367 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.47;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1831,198,0 chrIV 617371 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.67;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1788,204,0 chrIV 617421 . A C 1706 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.55;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1739,198,0 chrIV 617915 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.10;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2324,255,0 chrIV 618038 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.69;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2070,237,0 chrIV 618471 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.36;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1635,174,0 chrIV 618626 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.67;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1570,168,0 chrIV 618656 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.98;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2047,228,0 chrIV 619185 . T G 1533 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.1714;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.65;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1566,180,0 chrIV 619315 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.73;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1554,174,0 chrIV 619456 . C A 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=70;Dels=0.00;FS=3.140;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.477;QD=20.44;ReadPosRankSum=1.579;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1464,156,0 chrIV 619532 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.33;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1209,135,0 chrIV 619600 . T G 970 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=16.44;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1003,117,0 chrIV 619621 . C T 893 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.86;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:926,102,0 chrIV 619697 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=18.53;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1089,123,0 chrIV 619698 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=19.55;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1128,123,0 chrIV 619787 . C G 1142 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.72;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1175,138,0 chrIV 619809 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.55;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1030,114,0 chrIV 619843 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.21;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,47:52:99:928,105,0 chrIV 619883 . A G 680 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=17.89;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:713,81,0 chrIV 619900 . C T 537 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=13.77;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:570,66,0 chrIV 619930 . G A 630 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=15.37;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:663,72,0 chrIV 619942 . A T 572 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=15.46;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:66:605,66,0 chrIV 619943 . A C 561 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=15.16;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:594,66,0 chrIV 620075 . T G 356 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.18;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:389,45,0 chrIV 620076 . G C 365 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.59;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:398,45,0 chrIV 620079 . G A 394 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=17.13;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:427,48,0 chrIV 620087 . A G 368 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.33;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:401,45,0 chrIV 620103 . C T 339 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=14.12;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:372,39,0 chrIV 620106 . A G 325 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=13.54;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:39:358,39,0 chrIV 620108 . T C 313 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=12.52;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:39:346,39,0 chrIV 620254 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.36;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1978,219,0 chrIV 620304 . C G 2021 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.06;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2054,234,0 chrIV 620379 . A G 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=5.119;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.067;QD=21.60;ReadPosRankSum=1.666;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1156,132,0 chrIV 620438 . A C 934 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.31;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:967,108,0 chrIV 620447 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.71;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1062,114,0 chrIV 620486 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.60;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:996,108,0 chrIV 620832 . C T 509 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=14.14;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:63:542,63,0 chrIV 620963 . A G 349 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.300;QD=14.54;ReadPosRankSum=1.589;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:1,23:24:45:382,45,0 chrIV 621009 . T C 700 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:81:733,81,0 chrIV 621183 . T A 967 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1000,111,0 chrIV 621296 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:801,90,0 chrIV 621350 . T C 1037 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1070,123,0 chrIV 621542 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.72;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1856,198,0 chrIV 621550 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.66;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1427,165,0 chrIV 621579 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.52;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1014,117,0 chrIV 621798 . C T 797 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:830,90,0 chrIV 622252 . G A 734 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.82;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:767,84,0 chrIV 622891 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.35;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2125,234,0 chrIV 623053 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.63;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2467,285,0 chrIV 623197 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.86;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2503,285,0 chrIV 623798 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.06;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1638,183,0 chrIV 623886 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.21;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1565,171,0 chrIV 623966 . C A 1629 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.11;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1662,183,0 chrIV 624268 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.18;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2045,228,0 chrIV 624319 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=6.233;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.296;QD=18.87;ReadPosRankSum=2.213;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1995,234,0 chrIV 624478 . G A 2842 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.30;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2875,324,0 chrIV 624583 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.660;QD=19.29;ReadPosRankSum=1.650;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1653,186,0 chrIV 624733 . G T 1853 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.71;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1886,216,0 chrIV 624847 . G C 1912 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.24;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1945,228,0 chrIV 624920 . T G 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=76.5241;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.45;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1813,204,0 chrIV 624930 . T C 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=2.600;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.244;QD=20.49;ReadPosRankSum=2.803;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1816,207,0 chrIV 624969 . T G 1851 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.57;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1884,216,0 chrIV 625173 . A G 2137 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.43;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2170,249,0 chrIV 625250 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.43;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2117,234,0 chrIV 625474 . A G 2994 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.85;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3027,345,0 chrIV 625729 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.44;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2541,288,0 chrIV 625867 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.5995;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.98;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1791,192,0 chrIV 627107 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.05;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1612,180,0 chrIV 627941 . A G 1421 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1454,162,0 chrIV 628785 . T C 885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.979;QD=19.24;ReadPosRankSum=1.657;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:918,105,0 chrIV 628877 . G C 713 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:746,84,0 chrIV 628915 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1062,117,0 chrIV 628955 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.98;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:998,114,0 chrIV 629029 . T G 904 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.65;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:937,108,0 chrIV 629044 . G T 807 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=16.14;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:840,93,0 chrIV 629055 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.51;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:809,90,0 chrIV 629102 . C T 551 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=14.89;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:584,66,0 chrIV 629111 . C T 498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=4.523;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=1.529;QD=14.65;ReadPosRankSum=0.204;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:57:531,57,0 chrIV 629128 . T C 654 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.21;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:687,78,0 chrIV 629226 . A G 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=7.1562;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.069;QD=23.38;ReadPosRankSum=1.663;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1202,135,0 chrIV 629383 . G A 955 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.73;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:988,114,0 chrIV 629422 . A G 947 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=21.04;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:980,111,0 chrIV 629477 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=17.29;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:984,111,0 chrIV 629481 . A G 754 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=15.08;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:787,90,0 chrIV 629492 . A G 727 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=16.16;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:760,87,0 chrIV 629515 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.22;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:926,102,0 chrIV 629550 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.07;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1196,132,0 chrIV 629613 . A T 1956 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=25.08;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1989,213,0 chrIV 629663 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=17.57;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1245,141,0 chrIV 629687 . A G 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=3.409;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;MQRankSum=-1.368;QD=13.10;ReadPosRankSum=1.611;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:90:793,90,0 chrIV 629700 . C T 547 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=12.72;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:580,63,0 chrIV 629701 . C T 522 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=11.86;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:555,63,0 chrIV 629702 . G A 530 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=12.05;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:563,63,0 chrIV 629717 . A G 671 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=13.16;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:81:704,81,0 chrIV 629724 . T A 730 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=14.60;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:84:763,84,0 chrIV 629797 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=58;Dels=0.03;FS=4.314;HaplotypeScore=7.7547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.027;QD=20.47;ReadPosRankSum=1.668;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1220,132,0 chrIV 630050 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.83;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1659,192,0 chrIV 630103 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.22;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1628,183,0 chrIV 630125 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.27;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1735,198,0 chrIV 630138 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=20.65;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1623,174,0 chrIV 630449 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.47;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1046,120,0 chrIV 630548 . T C 1037 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.94;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1070,123,0 chrIV 630621 . T C 834 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=14.63;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:867,99,0 chrIV 630888 . C T 541 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.03;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:574,63,0 chrIV 631212 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.12;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1341,153,0 chrIV 631296 . C A 2600 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.53;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2633,297,0 chrIV 632423 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.04;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1456,168,0 chrIV 632937 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.98;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1187,138,0 chrIV 632958 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.48;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:851,96,0 chrIV 633231 . G A 2173 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.51;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2206,246,0 chrIV 633250 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.94;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2147,246,0 chrIV 633837 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.96;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1815,204,0 chrIV 633960 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=12.6031;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.19;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1919,207,0 chrIV 633999 . G C 2192 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.88;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2225,261,0 chrIV 634044 . T C 2804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.574;DP=126;Dels=0.00;FS=4.935;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.912;QD=22.25;ReadPosRankSum=3.699;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:5,121:126:99:2837,324,0 chrIV 634116 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.31;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2247,255,0 chrIV 634140 . A C 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.270;QD=18.61;ReadPosRankSum=1.573;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2061,231,0 chrIV 634593 . T C 1617 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.21;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1650,192,0 chrIV 634632 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.31;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1578,174,0 chrIV 634866 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=14.64;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1365,156,0 chrIV 634899 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.40;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1706,189,0 chrIV 634968 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.2503;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.97;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2046,222,0 chrIV 635008 . C T 2332 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.21;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2365,255,0 chrIV 635124 . A T 2223 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.23;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2256,252,0 chrIV 635526 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.57;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1259,150,0 chrIV 636201 . T C 3060 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.01;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3093,351,0 chrIV 636237 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.99;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2531,300,0 chrIV 636465 . A C 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.97;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1437,168,0 chrIV 636665 . A G 877 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.40;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:910,105,0 chrIV 636737 . A T 1044 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.47;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1077,120,0 chrIV 637466 . C G 1112 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.17;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1145,132,0 chrIV 637715 . C G 881 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.49;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:914,105,0 chrIV 638634 . G A 2666 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.16;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2699,291,0 chrIV 638815 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.97;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3548,396,0 chrIV 638842 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=121;Dels=0.00;FS=5.842;HaplotypeScore=9.7622;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.325;QD=21.34;ReadPosRankSum=1.703;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2615,297,0 chrIV 639043 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=10.12;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1085,123,0 chrIV 639124 . A G 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.626;DP=177;Dels=0.00;FS=2.320;HaplotypeScore=13.7972;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.005;QD=16.18;ReadPosRankSum=3.732;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:5,172:177:99:2897,330,0 chrIV 639649 . T C 595 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.00;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:72:628,72,0 chrIV 639896 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.07;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,26:29:48:441,48,0 chrIV 640048 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1973,216,0 chrIV 640078 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1829,210,0 chrIV 640463 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.99;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2342,258,0 chrIV 640565 . A G 2330 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.1856;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.91;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2363,270,0 chrIV 640955 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=16.35;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2158,234,0 chrIV 640973 . G C 1979 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=16.09;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2012,225,0 chrIV 641285 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.16;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1666,180,0 chrIV 641507 . T G 1742 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.24;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1775,198,0 chrIV 641720 . G A 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=64;Dels=0.00;FS=3.300;HaplotypeScore=6.6049;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.621;QD=19.70;ReadPosRankSum=-0.335;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1294,138,0 chrIV 641771 . T C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.914;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.559;QD=21.13;ReadPosRankSum=1.509;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1343,153,0 chrIV 641786 . T A 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.705;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.560;QD=20.17;ReadPosRankSum=1.626;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1344,150,0 chrIV 641822 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.42;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,147,0 chrIV 642569 . T C 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.983;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.082;QD=14.35;ReadPosRankSum=1.677;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:937,105,0 chrIV 642572 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=14.23;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:944,105,0 chrIV 642692 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.53;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1810,192,0 chrIV 642698 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.58;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1717,189,0 chrIV 643077 . T G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.578;DP=79;Dels=0.00;FS=6.189;HaplotypeScore=5.2903;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.808;QD=16.09;ReadPosRankSum=2.911;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1304,147,0 chrIV 643082 . C T 1253 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.93;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1286,141,0 chrIV 643127 . G A 758 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=11.66;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:791,87,0 chrIV 643129 . C T 660 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;QD=10.31;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:81:693,81,0 chrIV 643165 . G T 925 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=13.03;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:958,102,0 chrIV 643167 . G A 917 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=12.92;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:950,105,0 chrIV 643177 . A T 810 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=11.41;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:843,93,0 chrIV 643256 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.3037;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.17;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2218,249,0 chrIV 643795 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1643,180,0 chrIV 643862 . A C 1045 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.49;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1078,123,0 chrIV 643929 . T G 1213 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.66;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1246,147,0 chrIV 643973 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.51;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1430,153,0 chrIV 644054 . T C 780 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.96;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:93:813,93,0 chrIV 644081 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.83;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:75:657,75,0 chrIV 644376 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.71;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1027,111,0 chrIV 644514 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.33;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1700,189,0 chrIV 644629 . T A 1561 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.09;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1594,177,0 chrIV 645238 . A G 510 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=22.0787;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=18.89;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:543,63,0 chrIV 645246 . A G 381 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=16.57;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:414,48,0 chrIV 651528 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.61;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:9:77,9,0 chrIV 651534 . T A 68.51 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.28;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:101,12,0 chrIV 651540 . C A 102.26 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.30;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,30:31:15:135,15,0 chrIV 651580 . C T 437 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=6.94;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:51:470,51,0 chrIV 651590 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=9.93;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:758,84,0 chrIV 651672 . G A 3407.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=25.24;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3407,363,0 chrIV 651714 . G C 2606 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=21.02;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2639,303,0 chrIV 651778 . C A 2133 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=21.77;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2166,240,0 chrIV 651813 . C T 3215.99 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=15.1896;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=23.14;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3249,348,0 chrIV 651881 . C T 4664.01 PASS AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=23.44;SB=-2.527e+03 GT:AD:DP:GQ:PL 1/1:0,198:199:99:4664,510,0 chrIV 651974 . G A 2685 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.14;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2718,294,0 chrIV 652069 . A T 2554 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.80;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2587,279,0 chrIV 652106 . C A 2483 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=17.24;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2516,288,0 chrIV 652118 . A G 2561 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=16.96;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2594,291,0 chrIV 652176 . A C 1554 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=11.77;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1587,189,0 chrIV 652186 . G C 1340 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=10.63;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1373,153,0 chrIV 652203 . A T 959 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=8.80;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:992,114,0 chrIV 652205 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=9.72;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1122,129,0 chrIV 652260 . A T 2380 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=16.64;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2413,270,0 chrIV 652321 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.01;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2762,309,0 chrIV 653019 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.26;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1146,126,0 chrIV 653063 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.33;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1070,123,0 chrIV 653150 . C T 885 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.07;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:918,99,0 chrIV 653208 . C T 552 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.40;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:585,63,0 chrIV 653246 . T C 616 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.12;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:75:649,75,0 chrIV 653323 . T G 471 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=11.49;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:57:504,57,0 chrIV 654086 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.58;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1139,126,0 chrIV 654179 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1694,195,0 chrIV 654377 . A G 619 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=1;QD=14.07;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:652,72,0 chrIV 654780 . C T 724 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=15.40;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:757,81,0 chrIV 654798 . T C 634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;MQRankSum=-0.346;QD=11.53;ReadPosRankSum=1.669;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:75:667,75,0 chrIV 654823 . T G 628 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=9.52;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:75:661,75,0 chrIV 654890 . T G 920 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=15.08;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:953,111,0 chrIV 654972 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.04;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1616,186,0 chrIV 655011 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2825;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.19;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1952,213,0 chrIV 655491 . G A 698 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=13.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:78:731,78,0 chrIV 656349 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.527;QD=20.25;ReadPosRankSum=1.694;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1896,216,0 chrIV 656379 . A G 1590 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.13;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1623,186,0 chrIV 656388 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.42;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1580,189,0 chrIV 656583 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.50;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2373,264,0 chrIV 656607 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.91;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1931,219,0 chrIV 656613 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.35;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2015,222,0 chrIV 656691 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.04;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2197,255,0 chrIV 656736 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.37;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2435,279,0 chrIV 656959 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.6433;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.77;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2405,270,0 chrIV 657111 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.41;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1469,159,0 chrIV 657366 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.30;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:96:863,96,0 chrIV 657792 . A G 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.000;QD=18.34;ReadPosRankSum=1.670;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1060,120,0 chrIV 658052 . T C 642 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.06;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,30:32:78:675,78,0 chrIV 658436 . T G 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.452;QD=21.96;ReadPosRankSum=1.657;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1043,117,0 chrIV 658469 . T C 650 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=14.13;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:78:683,78,0 chrIV 658478 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.61;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:847,93,0 chrIV 658643 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1474,159,0 chrIV 658682 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.37;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1785,201,0 chrIV 658775 . C T 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=70;Dels=0.00;FS=6.220;HaplotypeScore=8.8281;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.276;QD=20.90;ReadPosRankSum=2.303;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:99:1496,143,0 chrIV 659042 . A T 1496 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.94;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1529,168,0 chrIV 659198 . G T 1186 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.56;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1219,132,0 chrIV 659402 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.18;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1410,165,0 chrIV 659467 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.44;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1413,159,0 chrIV 659689 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.89;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1841,210,0 chrIV 659912 . G C 1815 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.39;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1848,210,0 chrIV 659970 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.96;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1510,171,0 chrIV 660025 . G C 1936 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.78;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1969,225,0 chrIV 660107 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.92;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1958,216,0 chrIV 660131 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.17;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2002,228,0 chrIV 660155 . T A 1909 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.28;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1942,219,0 chrIV 660197 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.51;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2207,249,0 chrIV 660237 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.40;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1964,222,0 chrIV 660248 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=3.013;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.405;QD=17.15;ReadPosRankSum=2.403;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:2,104:107:99:1868,210,0 chrIV 660411 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619;DP=93;Dels=0.00;FS=3.727;HaplotypeScore=6.2539;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.694;QD=18.92;ReadPosRankSum=1.469;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1793,204,0 chrIV 660498 . A G 2220 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2253,261,0 chrIV 660681 . C G 1747 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.55;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1780,201,0 chrIV 660748 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.93;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1707,192,0 chrIV 660773 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.63;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1549,177,0 chrIV 660788 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=6.921;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.206;QD=17.95;ReadPosRankSum=2.399;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1774,204,0 chrIV 660950 . A G 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0604;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.171;QD=17.96;ReadPosRankSum=1.534;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1919,219,0 chrIV 661137 . A G 1696 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.43;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1729,195,0 chrIV 661159 . G T 1703 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=17.93;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1736,189,0 chrIV 661166 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.96;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1741,192,0 chrIV 661181 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.21;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1654,189,0 chrIV 661358 . A T 2423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.380;DP=115;Dels=0.00;FS=12.277;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.793;QD=21.07;ReadPosRankSum=3.380;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:4,111:115:99:2456,264,0 chrIV 661542 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.91;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1792,195,0 chrIV 661608 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.487;QD=18.62;ReadPosRankSum=1.662;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1876,210,0 chrIV 662073 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.32;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1293,141,0 chrIV 662378 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.69;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1117,129,0 chrIV 662769 . A G 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5686;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.496;QD=18.04;ReadPosRankSum=1.654;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:96:845,96,0 chrIV 662835 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.24;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1072,120,0 chrIV 663117 . A G 338 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=16.10;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:42:371,42,0 chrIV 663138 . G A 329 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=13.71;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,22:24:39:362,39,0 chrIV 663240 . A T 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=54;Dels=0.00;FS=15.620;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.340;QD=21.50;ReadPosRankSum=2.870;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1194,135,0 chrIV 663915 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.99;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1328,150,0 chrIV 664109 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.75;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:962,105,0 chrIV 664347 . T G 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=44;Dels=0.00;FS=3.093;HaplotypeScore=5.9350;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.874;QD=18.68;ReadPosRankSum=2.336;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:2,41:44:99:855,99,0 chrIV 664395 . G A 961 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:994,111,0 chrIV 664456 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.71;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1081,129,0 chrIV 664477 . T C 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.083;QD=17.05;ReadPosRankSum=1.516;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1397,159,0 chrIV 664737 . C A 1440 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.46;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1473,171,0 chrIV 664947 . A G 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.692;QD=17.05;ReadPosRankSum=1.692;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1516,171,0 chrIV 665204 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.90;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1567,171,0 chrIV 665718 . C T 2789 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.79;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2822,303,0 chrIV 665841 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.533;QD=20.91;ReadPosRankSum=1.699;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2208,246,0 chrIV 666159 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.67;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1935,219,0 chrIV 666663 . T C 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.650;QD=22.50;ReadPosRankSum=1.678;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1473,165,0 chrIV 666947 . C G 1746 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=15.45;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1779,201,0 chrIV 666968 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=12.98;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1318,147,0 chrIV 666977 . A T 1129 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=11.52;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1162,132,0 chrIV 666994 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=9.49;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:906,99,0 chrIV 667014 . C A 733 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=8.94;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:84:766,84,0 chrIV 667027 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5452;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=10.57;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:93:847,93,0 chrIV 667309 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.65;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1516,171,0 chrIV 667439 . C G 1156 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.06;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1189,135,0 chrIV 667469 . A T 1014 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.48;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1047,117,0 chrIV 667473 . T C 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=63;Dels=0.00;FS=9.271;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.549;QD=15.86;ReadPosRankSum=2.333;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1032,114,0 chrIV 667576 . T G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=7.758;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.510;QD=19.35;ReadPosRankSum=2.286;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1484,171,0 chrIV 667644 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.50;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1452,165,0 chrIV 667780 . T C 736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=43;Dels=0.00;FS=3.782;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=0.927;QD=17.12;ReadPosRankSum=1.652;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:90:769,90,0 chrIV 667858 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=20.10;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1239,135,0 chrIV 668476 . C T 483 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=15.58;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:516,54,0 chrIV 668554 . A C 1075 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=22.40;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1108,126,0 chrIV 668626 . T A 647 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=17.97;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:75:680,75,0 chrIV 668861 . G A 235 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-2.800e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:30:268,30,0 chrIV 669064 . A G 979 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1012,114,0 chrIV 669415 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.74;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1381,156,0 chrIV 670000 . T C 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.931;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.058;QD=18.59;ReadPosRankSum=1.693;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1706,192,0 chrIV 670255 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.22;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1821,201,0 chrIV 670324 . T A 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=3.5109;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.175;QD=20.09;ReadPosRankSum=1.693;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1821,204,0 chrIV 670418 . A T 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.605;QD=21.86;ReadPosRankSum=1.649;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1847,207,0 chrIV 670636 . G C 1934 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.25;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1967,219,0 chrIV 670771 . A C 2129 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.72;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2162,246,0 chrIV 671025 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8485;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.96;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1730,189,0 chrIV 671041 . T A 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=99;Dels=0.00;FS=3.583;HaplotypeScore=5.1685;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.693;QD=15.63;ReadPosRankSum=1.693;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1580,174,0 chrIV 671079 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.28;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2080,234,0 chrIV 671086 . G C 1931 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.55;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:1964,219,0 chrIV 671207 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=20.71;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1483,159,0 chrIV 671226 . C G 1229 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=19.51;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1262,144,0 chrIV 671238 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=55.2409;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.86;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,150,0 chrIV 671379 . T C 2849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=2.993;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.390;QD=21.92;ReadPosRankSum=2.412;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2882,330,0 chrIV 671460 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.75;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1949,222,0 chrIV 671508 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=16.25;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1008,108,0 chrIV 671547 . T C 603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.363;QD=13.70;ReadPosRankSum=1.652;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:72:636,72,0 chrIV 671559 . T A 653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.184;QD=13.89;ReadPosRankSum=1.659;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:72:686,72,0 chrIV 671764 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1832,207,0 chrIV 671820 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1374,159,0 chrIV 671958 . T C 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.262;QD=19.29;ReadPosRankSum=-0.892;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1306,131,0 chrIV 671979 . T C 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.271;QD=19.06;ReadPosRankSum=1.678;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1253,141,0 chrIV 672153 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.76;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1154,126,0 chrIV 672351 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.32;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1954,213,0 chrIV 672752 . G A 2530 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.00;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2563,282,0 chrIV 672865 . A G 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.3019;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.410;QD=20.60;ReadPosRankSum=1.705;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2711,315,0 chrIV 673035 . T A 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=8.735;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.685;QD=21.54;ReadPosRankSum=2.354;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2252,249,0 chrIV 673237 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.03;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1215,138,0 chrIV 673524 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.50;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1944,210,0 chrIV 673957 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=96;Dels=0.00;FS=5.332;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.213;QD=21.31;ReadPosRankSum=3.308;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:4,91:96:99:2079,234,0 chrIV 674236 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.74;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1652,186,0 chrIV 674321 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.66;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2019,228,0 chrIV 674440 . C A 1963 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.65;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1996,216,0 chrIV 674458 . T G 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.590;QD=21.93;ReadPosRankSum=1.685;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1634,183,0 chrIV 674519 . A G 992 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.08;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1025,117,0 chrIV 674668 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.2056;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=16.35;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1259,141,0 chrIV 674810 . A G 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5468;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=2.320;QD=16.89;ReadPosRankSum=2.277;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:996,111,0 chrIV 675008 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.77;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1084,126,0 chrIV 675565 . G A 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.577;QD=20.17;ReadPosRankSum=-0.025;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1445,153,0 chrIV 675598 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.64;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1388,147,0 chrIV 675614 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.69;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1285,141,0 chrIV 675634 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.92;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1133,129,0 chrIV 675781 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=18.33;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1188,129,0 chrIV 675790 . C A 1079 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=16.86;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1112,126,0 chrIV 675796 . G T 1088 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=16.74;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1121,126,0 chrIV 675810 . T A 795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=0.058;QD=13.25;ReadPosRankSum=1.675;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:93:828,93,0 chrIV 675866 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2651;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.80;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1760,201,0 chrIV 676166 . T G 1317 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.46;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1350,153,0 chrIV 676743 . C T 2917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8641;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.706;QD=21.93;ReadPosRankSum=1.601;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2950,327,0 chrIV 676860 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=90;Dels=0.00;FS=9.953;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.125;QD=20.48;ReadPosRankSum=2.921;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,86:90:99:1876,213,0 chrIV 677241 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.52;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1776,195,0 chrIV 677543 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=8.932;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.019;QD=22.13;ReadPosRankSum=2.379;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1582,177,0 chrIV 677646 . T C 475 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.38;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,27:29:60:508,60,0 chrIV 677658 . A G 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.321;QD=18.11;ReadPosRankSum=1.605;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:60:522,60,0 chrIV 677713 . C T 795 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.28;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:828,90,0 chrIV 677729 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=15.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:905,105,0 chrIV 678076 . T C 443 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.10;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:476,54,0 chrIV 678110 . G A 791 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:90:824,90,0 chrIV 678128 . C T 1203 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1236,138,0 chrIV 678156 . T C 998 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.558;QD=19.57;ReadPosRankSum=2.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1031,120,0 chrIV 678436 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.35;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2485,264,0 chrIV 678773 . T C 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.298;DP=96;Dels=0.00;FS=24.928;HaplotypeScore=3.6456;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.056;QD=17.95;ReadPosRankSum=4.256;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:7,89:96:99:1756,192,0 chrIV 678781 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.15;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1927,216,0 chrIV 678799 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=4.553;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.339;QD=17.99;ReadPosRankSum=1.696;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1778,201,0 chrIV 679260 . A G 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.027;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.652;QD=17.97;ReadPosRankSum=2.309;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:2,68:71:99:1309,150,0 chrIV 679438 . A T 1229 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1262,138,0 chrIV 679489 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5356;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.26;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:996,114,0 chrIV 679624 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.28;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1802,210,0 chrIV 679950 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.78;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1710,195,0 chrIV 679951 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.42;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1737,195,0 chrIV 680023 . C A 1494 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.79;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1527,168,0 chrIV 680244 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.12;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1582,186,0 chrIV 680288 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.23;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1368,150,0 chrIV 680316 . C A 1479 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.13;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1512,162,0 chrIV 680423 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.0680;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.87;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1444,165,0 chrIV 680490 . G C 2709 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.85;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2742,318,0 chrIV 680614 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.59;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1427,153,0 chrIV 680639 . A G 1203 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.83;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1236,147,0 chrIV 680727 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.52;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1829,198,0 chrIV 680751 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.69;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1472,165,0 chrIV 680772 . A T 1235 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=15.06;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1268,138,0 chrIV 680813 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.02;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1463,165,0 chrIV 681125 . A G 1378 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.97;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1411,159,0 chrIV 681246 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1422,165,0 chrIV 681304 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.2556;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.91;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1764,192,0 chrIV 681417 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.21;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1344,144,0 chrIV 681664 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.20;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1811,201,0 chrIV 681734 . G T 934 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.31;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:51:99:967,102,0 chrIV 681886 . C T 301 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=13.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:334,42,0 chrIV 681918 . C T 647 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=15.05;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:72:680,72,0 chrIV 681935 . A G 477 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=12.89;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:60:510,60,0 chrIV 681959 . T A 474 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=14.36;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:57:507,57,0 chrIV 681960 . T G 486 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=14.73;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:57:519,57,0 chrIV 682085 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.92;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1100,120,0 chrIV 682093 . T C 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.027;QD=17.65;ReadPosRankSum=2.289;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:96:845,96,0 chrIV 682121 . A C 677 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=15.04;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:45:81:710,81,0 chrIV 682165 . G A 881 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.58;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:914,102,0 chrIV 682178 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.39;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1032,111,0 chrIV 682303 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.65;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2635,294,0 chrIV 682420 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.78;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1423,156,0 chrIV 682509 . C G 1358 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=16.56;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1391,156,0 chrIV 682954 . A G 678 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.32;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:711,81,0 chrIV 682960 . T C 657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.577;QD=14.60;ReadPosRankSum=1.578;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:78:690,78,0 chrIV 683520 . A G 1516 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.72;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1549,174,0 chrIV 683768 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.69;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1116,129,0 chrIV 683805 . C T 1227 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.59;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1260,138,0 chrIV 683812 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.23;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1325,150,0 chrIV 683834 . G C 1167 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.42;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1200,135,0 chrIV 683890 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.2310;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.96;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1590,174,0 chrIV 683918 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.27;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1288,144,0 chrIV 684083 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.39;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:828,90,0 chrIV 684395 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.66;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1468,162,0 chrIV 685013 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.41;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1547,171,0 chrIV 685091 . A T 1586 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.43;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1619,174,0 chrIV 685142 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.07;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1787,201,0 chrIV 685189 . A T 1949 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1982,222,0 chrIV 685290 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.86;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1840,213,0 chrIV 685531 . C G 1946 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.15;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1979,222,0 chrIV 685659 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.51;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1106,123,0 chrIV 685708 . T G 1165 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.20;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1198,138,0 chrIV 685822 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.57;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1853,204,0 chrIV 685839 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.32;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1821,207,0 chrIV 686038 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.92;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1142,126,0 chrIV 686709 . C A 1067 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.78;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1100,117,0 chrIV 686810 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.11;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1426,156,0 chrIV 686865 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.97;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:78:99:1435,162,0 chrIV 686871 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.328;QD=19.43;ReadPosRankSum=1.685;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1471,174,0 chrIV 687255 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.58;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1343,153,0 chrIV 687279 . T G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=3.267;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.259;QD=20.55;ReadPosRankSum=1.692;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1841,210,0 chrIV 687427 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.80;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2017,234,0 chrIV 687498 . T A 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.184;QD=24.35;ReadPosRankSum=1.695;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2322,252,0 chrIV 687533 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.74;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2190,252,0 chrIV 687534 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2308,252,0 chrIV 687589 . A C 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.91;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1792,207,0 chrIV 687632 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=15.73;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1276,138,0 chrIV 687643 . A G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.652;QD=15.19;ReadPosRankSum=1.642;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1203,138,0 chrIV 687745 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.102;QD=16.27;ReadPosRankSum=1.274;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1188,116,0 chrIV 687746 . G A 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-1.125;QD=16.62;ReadPosRankSum=2.570;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1246,138,0 chrIV 687830 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=18.37;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1741,201,0 chrIV 687841 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.76;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1851,201,0 chrIV 687859 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=77.1648;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=17.97;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1650,180,0 chrIV 688177 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=17.87;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:79:99:1445,165,0 chrIV 688353 . A G 1776 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.20;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1809,201,0 chrIV 688432 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=20.05;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2018,219,0 chrIV 688437 . C A 1858 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=19.35;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1891,204,0 chrIV 688448 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=4.197;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-0.414;QD=17.26;ReadPosRankSum=1.694;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1621,192,0 chrIV 688474 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.43;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2023,228,0 chrIV 688513 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=16.63;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1746,201,0 chrIV 688530 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.35;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1996,216,0 chrIV 688601 . A G 1688 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.35;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1721,192,0 chrIV 688602 . C A 1794 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=15.60;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:1827,198,0 chrIV 688608 . G A 1929 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.35;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1962,213,0 chrIV 688689 . T G 2260 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.18;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2293,264,0 chrIV 688697 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.315;QD=19.27;ReadPosRankSum=1.638;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2172,240,0 chrIV 688719 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6543;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.54;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2138,228,0 chrIV 688788 . T A 2352 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.19;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2385,258,0 chrIV 688821 . T C 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.742;QD=20.81;ReadPosRankSum=1.697;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2072,234,0 chrIV 688841 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.20;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2030,225,0 chrIV 689214 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.05;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1938,222,0 chrIV 689315 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.77;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1647,186,0 chrIV 689403 . A G 1961 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.07;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1994,222,0 chrIV 689526 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.315;QD=18.30;ReadPosRankSum=1.700;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2009,228,0 chrIV 689532 . C G 1881 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.81;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1914,216,0 chrIV 689657 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1846,201,0 chrIV 690128 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.18;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,192,0 chrIV 690152 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.69;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1957,219,0 chrIV 690212 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.04;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1636,177,0 chrIV 690267 . C A 1130 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.3535;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.18;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1163,126,0 chrIV 690503 . T A 2140 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.06;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2173,228,0 chrIV 690684 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.92;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1129,132,0 chrIV 690751 . G A 772 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.39;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:87:805,87,0 chrIV 690855 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.55;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1837,201,0 chrIV 690909 . C G 1728 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.58;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1761,198,0 chrIV 690915 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.17;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1681,186,0 chrIV 690968 . C G 1254 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.29;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1287,147,0 chrIV 691234 . T A 472 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.73;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:54:505,54,0 chrIV 691366 . C G 501 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=14.31;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:60:534,60,0 chrIV 691713 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.28;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1047,114,0 chrIV 691936 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3688;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.96;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1790,207,0 chrIV 691984 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=17.64;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1568,171,0 chrIV 692002 . A G 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.973;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.512;QD=14.87;ReadPosRankSum=1.693;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1356,156,0 chrIV 692140 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.99;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1775,192,0 chrIV 692149 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.69;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1569,168,0 chrIV 692170 . A G 1283 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.15;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1316,147,0 chrIV 692212 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.21;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1308,144,0 chrIV 692320 . C T 2833 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.41;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2866,315,0 chrIV 692518 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.74;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1817,201,0 chrIV 692575 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.38;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1180,135,0 chrIV 692593 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=15.85;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1190,138,0 chrIV 692602 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=13.79;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1095,123,0 chrIV 692655 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=17.82;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1868,201,0 chrIV 692797 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.81;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1351,147,0 chrIV 692839 . T C 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=6.419;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.456;QD=15.75;ReadPosRankSum=1.672;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:931,108,0 chrIV 693070 . G C 1686 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.90;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1719,195,0 chrIV 693184 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1376,153,0 chrIV 693255 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.19;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1261,138,0 chrIV 693429 . A T 1276 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.23;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1309,150,0 chrIV 693821 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=22.61;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1751,189,0 chrIV 694033 . T C 2885 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.36;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2918,342,0 chrIV 694079 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.0933;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.93;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2509,282,0 chrIV 694266 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=14.63;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:823,90,0 chrIV 694373 . T C 1105 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=13.99;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1138,129,0 chrIV 694395 . T A 1098 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=16.39;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1131,123,0 chrIV 694457 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=17.34;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:692,81,0 chrIV 694473 . T G 525 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=15.91;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:63:558,63,0 chrIV 694532 . A C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DP=20;Dels=0.05;FS=13.676;HaplotypeScore=5.1657;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=0.711;QD=0.52;ReadPosRankSum=-0.829;SB=-6.177e-03 GT:AD:DP:GQ:PL 0/1:16,3:19:38:40,0,38 chrIV 694556 . A G 342 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=11.03;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,25:31:42:375,42,0 chrIV 694587 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.77;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:969,105,0 chrIV 694831 . A C 982 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=28.1472;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.38;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1015,114,0 chrIV 695576 . A C 2453 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.33;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2486,282,0 chrIV 695620 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.49;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2266,258,0 chrIV 695803 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.40;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1450,165,0 chrIV 695860 . C G 1906 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.42;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1939,222,0 chrIV 695878 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.77;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2014,228,0 chrIV 696106 . C G 1660 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.44;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1693,189,0 chrIV 696130 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.02;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1429,156,0 chrIV 696145 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=6.185;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.000;QD=13.33;ReadPosRankSum=2.914;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1126,129,0 chrIV 696637 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.199;QD=21.86;ReadPosRankSum=1.688;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1738,201,0 chrIV 696745 . T C 2387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.900;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.540;QD=22.10;ReadPosRankSum=0.898;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2420,270,0 chrIV 696965 . T C 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.715;QD=22.37;ReadPosRankSum=1.700;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2471,288,0 chrIV 697118 . A G 1124 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1457;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.06;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1157,132,0 chrIV 697144 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=14.16;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1166,132,0 chrIV 697575 . A G 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.169;QD=18.59;ReadPosRankSum=1.646;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1520,168,0 chrIV 697597 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=17.27;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1397,159,0 chrIV 697693 . A G 847 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.82;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:880,99,0 chrIV 697699 . T G 927 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.72;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:960,108,0 chrIV 697705 . G A 989 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.78;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1022,111,0 chrIV 697759 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.87;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:901,99,0 chrIV 697891 . G A 708 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=15.39;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:81:741,81,0 chrIV 697894 . A G 707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.039;QD=15.71;ReadPosRankSum=1.655;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,44:45:84:740,84,0 chrIV 698171 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.53;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1047,111,0 chrIV 698172 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.67;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1030,111,0 chrIV 698417 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1762,201,0 chrIV 698508 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.18;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1869,219,0 chrIV 698534 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.87;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2146,243,0 chrIV 698575 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.78;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2756,300,0 chrIV 698668 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.79;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2174,240,0 chrIV 699022 . T A 2785 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.8205;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.04;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2818,309,0 chrIV 699153 . C T 3531.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.49;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3531,381,0 chrIV 699204 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2394,267,0 chrIV 699280 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1211,138,0 chrIV 699436 . A C 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8188;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.166;QD=19.44;ReadPosRankSum=1.702;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2288,252,0 chrIV 699810 . C G 1622 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.31;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1655,192,0 chrIV 699938 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.2677;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.68;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,93:99:99:2080,231,0 chrIV 700210 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.54;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1987,225,0 chrIV 700250 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.94;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1947,222,0 chrIV 700440 . C T 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1645;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.687;QD=19.85;ReadPosRankSum=0.228;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1621,177,0 chrIV 700569 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.08;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1479,168,0 chrIV 700573 . C A 1591 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.14;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1624,180,0 chrIV 700855 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.12;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1602,174,0 chrIV 701137 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.68;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1471,159,0 chrIV 701262 . T C 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=3.550;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.282;QD=18.69;ReadPosRankSum=1.687;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,76:80:99:1528,174,0 chrIV 701279 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.866;QD=19.34;ReadPosRankSum=1.689;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1580,177,0 chrIV 701448 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.38;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:901,105,0 chrIV 701457 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.48;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1163,123,0 chrIV 701674 . G C 1887 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.01;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1920,210,0 chrIV 701739 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.96;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1151,126,0 chrIV 701775 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.31;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1205,135,0 chrIV 702480 . A G 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.821;QD=18.54;ReadPosRankSum=1.672;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1090,126,0 chrIV 702555 . T C 686 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.15;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:719,81,0 chrIV 702757 . A T 1316 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.25;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1349,150,0 chrIV 702950 . G A 821 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.05;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:854,96,0 chrIV 702967 . A G 706 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=17.65;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:739,84,0 chrIV 702973 . G A 703 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.15;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:81:736,81,0 chrIV 703275 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.46;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2544,294,0 chrIV 703299 . C A 2050 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.52;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2083,246,0 chrIV 703359 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.33;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2078,234,0 chrIV 703386 . G C 2044 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8864;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=16.48;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2077,234,0 chrIV 703399 . C A 2105 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.9797;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.57;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2138,243,0 chrIV 703521 . G A 4074.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=184;Dels=0.00;FS=3.594;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.448;QD=22.14;ReadPosRankSum=-0.937;SB=-2.030e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:4074,453,0 chrIV 703850 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.39;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2399,264,0 chrIV 703854 . G C 2347 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.34;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2380,267,0 chrIV 703905 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.72;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,165:167:99:2826,327,0 chrIV 704345 . T A 1344 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.41;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1377,150,0 chrIV 705548 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.03;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:2031,219,0 chrIV 706032 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=3.826;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.733;QD=17.68;ReadPosRankSum=1.701;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2013,225,0 chrIV 706217 . A T 2475 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.49;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2508,279,0 chrIV 706601 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.05;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2833,321,0 chrIV 707014 . A C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.564;DP=89;Dels=0.00;FS=3.931;HaplotypeScore=6.8448;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=1.654;QD=18.38;ReadPosRankSum=1.693;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1669,192,0 chrIV 707021 . A G 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.2240;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.019;QD=16.39;ReadPosRankSum=1.658;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1574,180,0 chrIV 707342 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7809;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.44;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1287,141,0 chrIV 707396 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.325;QD=22.08;ReadPosRankSum=1.691;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1910,216,0 chrIV 707711 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.16;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1472,168,0 chrIV 707900 . A T 2575 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.60;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2608,291,0 chrIV 707905 . T A 2669 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.53;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2702,297,0 chrIV 708341 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.997;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.308;QD=19.38;ReadPosRankSum=2.359;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2145,243,0 chrIV 708376 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.10;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2103,240,0 chrIV 708815 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5219;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.11;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1953,213,0 chrIV 709011 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.01;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1882,213,0 chrIV 709040 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.39;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1662,189,0 chrIV 709210 . G C 2037 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0628;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=19.97;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2070,231,0 chrIV 709257 . A G 1852 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=18.71;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1885,216,0 chrIV 709260 . T C 1845 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.394;DP=102;Dels=0.00;FS=31.653;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-1.787;QD=18.09;ReadPosRankSum=4.394;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:7,95:102:99:1878,213,0 chrIV 709261 . A C 1832 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=17.62;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1865,213,0 chrIV 709611 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.61;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1974,225,0 chrIV 709623 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.12;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2061,234,0 chrIV 709686 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.776;QD=20.56;ReadPosRankSum=1.702;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2438,276,0 chrIV 709770 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.23;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1856,210,0 chrIV 709884 . G T 1533 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.93;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1566,171,0 chrIV 709887 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.32;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1488,165,0 chrIV 710007 . G A 2633 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3437;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.41;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2666,291,0 chrIV 710100 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=15.72;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1369,156,0 chrIV 710109 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=12.39;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1049,117,0 chrIV 710130 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=15.68;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1491,165,0 chrIV 710371 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.524;QD=21.04;ReadPosRankSum=1.663;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2137,240,0 chrIV 710478 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=17.85;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1372,156,0 chrIV 710492 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.13;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1335,153,0 chrIV 710496 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.76;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1307,150,0 chrIV 710715 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.55;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1499,162,0 chrIV 710853 . C T 955 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.73;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:988,108,0 chrIV 710996 . T C 1139 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.24;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1172,129,0 chrIV 711174 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.30;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1491,159,0 chrIV 711204 . C A 1040 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.39;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1073,120,0 chrIV 711312 . T C 940 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=15.16;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:973,111,0 chrIV 711314 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=14.90;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:972,111,0 chrIV 711528 . A C 966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=21.00;ReadPosRankSum=1.657;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:999,117,0 chrIV 711909 . C G 969 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:1002,111,0 chrIV 711956 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.84;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1126,120,0 chrIV 712041 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.88;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1127,129,0 chrIV 712092 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.30;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1271,144,0 chrIV 712122 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.16;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1182,132,0 chrIV 712473 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=18.30;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:820,90,0 chrIV 712474 . C A 822 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.68;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:855,93,0 chrIV 712698 . A T 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=7.123;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.003;QD=20.04;ReadPosRankSum=2.348;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1977,219,0 chrIV 712818 . A G 1414 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.42;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1447,165,0 chrIV 712857 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.82;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1288,147,0 chrIV 713009 . A G 1333 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.31;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1366,156,0 chrIV 713011 . G C 1394 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.42;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1427,162,0 chrIV 713084 . G T 1198 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=13.02;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1231,135,0 chrIV 713108 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3861;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=12.42;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:915,99,0 chrIV 713109 . C T 851 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6812;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=12.51;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:884,99,0 chrIV 713130 . C T 774 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=12.48;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:90:807,90,0 chrIV 713166 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.14;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:969,111,0 chrIV 713335 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.87;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1588,177,0 chrIV 713336 . T A 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.693;QD=22.69;ReadPosRankSum=1.683;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1621,177,0 chrIV 713439 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1399;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.70;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1921,207,0 chrIV 713520 . A G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.466;QD=20.43;ReadPosRankSum=1.679;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1361,159,0 chrIV 713616 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.41;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2046,234,0 chrIV 713625 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.159;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.752;QD=20.77;ReadPosRankSum=1.662;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2089,243,0 chrIV 713871 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.57;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1910,210,0 chrIV 714270 . G T 1870 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.11;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1903,210,0 chrIV 714483 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1249,141,0 chrIV 714588 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.14;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1702,198,0 chrIV 714612 . A T 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.259;HaplotypeScore=9.1156;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.449;QD=16.72;ReadPosRankSum=1.604;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1839,210,0 chrIV 714714 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2707;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.74;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2337,261,0 chrIV 714801 . G A 2517 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.70;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2550,276,0 chrIV 714933 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.60;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2191,246,0 chrIV 715349 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=21.65;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1765,189,0 chrIV 715352 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.84;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1484,171,0 chrIV 715627 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=15.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1066,120,0 chrIV 715629 . A G 1027 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=15.80;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1060,120,0 chrIV 715691 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.22;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1428,159,0 chrIV 715715 . T A 1789 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7817;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.33;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1822,207,0 chrIV 715933 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7213;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.16;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1525,168,0 chrIV 716020 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.27;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1517,165,0 chrIV 716118 . T C 1311 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.15;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1344,156,0 chrIV 716374 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.42;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3037,339,0 chrIV 716407 . A T 2294 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.78;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2327,258,0 chrIV 716464 . T C 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8271;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.326;QD=19.87;ReadPosRankSum=2.388;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1603,183,0 chrIV 716510 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.87;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1424,165,0 chrIV 716521 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.47;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1396,159,0 chrIV 716641 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.678;QD=20.49;ReadPosRankSum=1.694;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1918,219,0 chrIV 716654 . G T 2045 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.66;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2078,222,0 chrIV 716660 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.64;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2102,240,0 chrIV 716786 . A T 2140 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.38;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2173,243,0 chrIV 716832 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.50;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2081,225,0 chrIV 716915 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.01;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1554,174,0 chrIV 717241 . C G 594 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=18.00;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:72:627,72,0 chrIV 717247 . T C 667 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=19.62;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:700,81,0 chrIV 717252 . A G 667 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=20.21;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:700,78,0 chrIV 717264 . T C 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=32;Dels=0.00;FS=3.291;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=-1.191;QD=16.25;ReadPosRankSum=1.191;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:63:553,63,0 chrIV 717285 . A G 483 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=15.58;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:516,60,0 chrIV 717372 . T C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.536;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=1.412;QD=16.57;ReadPosRankSum=1.668;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:928,108,0 chrIV 717377 . G C 926 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.15;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:959,111,0 chrIV 717532 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=21.75;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1229,132,0 chrIV 717546 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.32;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1077,120,0 chrIV 717634 . C A 1390 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.17;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1423,153,0 chrIV 717729 . G C 1060 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.38;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1093,129,0 chrIV 717736 . T C 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=2.941;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;MQRankSum=-0.710;QD=20.63;ReadPosRankSum=2.359;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1147,132,0 chrIV 717744 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.53;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1325,150,0 chrIV 717791 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=16.12;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1371,156,0 chrIV 717813 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=17.67;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1411,153,0 chrIV 717834 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=13.53;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1129,126,0 chrIV 717840 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=14.39;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1141,126,0 chrIV 717936 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.63;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2273,249,0 chrIV 717987 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=103;Dels=0.00;FS=5.522;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.814;QD=20.50;ReadPosRankSum=2.912;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2145,246,0 chrIV 718146 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.03;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1547,171,0 chrIV 718187 . C A 1453 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.46;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1486,162,0 chrIV 718242 . T A 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=3.823;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.296;QD=19.18;ReadPosRankSum=1.690;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1606,180,0 chrIV 718259 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.67;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1601,177,0 chrIV 718303 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.20;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1761,201,0 chrIV 718331 . A C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.294;QD=18.99;ReadPosRankSum=1.613;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1685,195,0 chrIV 718416 . C A 1386 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.52;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1419,159,0 chrIV 718455 . A T 1391 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.46;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1424,162,0 chrIV 718640 . T G 1310 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.48;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1343,153,0 chrIV 718760 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.99;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1439,159,0 chrIV 718867 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.77;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1923,219,0 chrIV 718958 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.72;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2159,234,0 chrIV 719032 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.93;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2204,249,0 chrIV 719116 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.25;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1712,183,0 chrIV 719745 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.65;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1251,141,0 chrIV 719860 . C G 1521 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1554,177,0 chrIV 720061 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=6.743;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.338;QD=20.35;ReadPosRankSum=2.390;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1702,189,0 chrIV 720086 . G C 1487 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.37;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1520,174,0 chrIV 720321 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.60;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1150,132,0 chrIV 720439 . T A 924 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=14.00;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:957,108,0 chrIV 720440 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=13.68;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:922,105,0 chrIV 720645 . A G 565 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.48;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:598,69,0 chrIV 720763 . G T 937 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:970,105,0 chrIV 720993 . C G 893 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:926,108,0 chrIV 721283 . A G 615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=2.945;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.038;QD=18.64;ReadPosRankSum=2.301;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:75:648,75,0 chrIV 721365 . A G 839 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.4983;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.24;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:872,99,0 chrIV 722085 . A G 866 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.04;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:899,102,0 chrIV 722265 . A G 175.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=9.72;SB=-2.704e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:24:208,24,0 chrIV 722407 . A G 1267 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1300,150,0 chrIV 722776 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=12.85;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:907,105,0 chrIV 723895 . G A 2265 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.87;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2298,270,0 chrIV 723910 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.4052;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.34;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1922,210,0 chrIV 724081 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.67;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2968,315,0 chrIV 724738 . A T 1778 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.76;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1811,204,0 chrIV 725245 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.36;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1458,159,0 chrIV 725461 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2191,255,0 chrIV 726492 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.11;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1766,192,0 chrIV 726762 . C G 1311 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1743;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.17;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1344,153,0 chrIV 726901 . T A 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=9.1088;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.017;QD=22.01;ReadPosRankSum=2.317;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1662,180,0 chrIV 727120 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3004;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.55;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1823,201,0 chrIV 727318 . T A 1302 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1335,147,0 chrIV 727809 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=27.0467;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=17.78;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1811,207,0 chrIV 727893 . G T 2197 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.73;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2230,249,0 chrIV 728918 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.64;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1369,147,0 chrIV 728966 . A C 1239 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1272,144,0 chrIV 730067 . T G 1866 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.64;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1899,213,0 chrIV 730085 . A G 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5017;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.437;QD=18.32;ReadPosRankSum=1.697;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1865,210,0 chrIV 730110 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.7069;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.89;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1922,210,0 chrIV 730279 . A G 2350 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.11;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2383,273,0 chrIV 730704 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.31;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1713,195,0 chrIV 731714 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.52;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1049,117,0 chrIV 731816 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1383,156,0 chrIV 731870 . G C 970 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1003,111,0 chrIV 732272 . T C 810 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.76;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:96:843,96,0 chrIV 732401 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.66;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1098,120,0 chrIV 733047 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.22;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2123,228,0 chrIV 733663 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.61;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1956,216,0 chrIV 733784 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.00;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1735,192,0 chrIV 735360 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1626,186,0 chrIV 738672 . A G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.699;HaplotypeScore=6.0754;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.162;QD=21.52;ReadPosRankSum=1.686;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1647,186,0 chrIV 739056 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.25;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1544,171,0 chrIV 741415 . A G 942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.405;QD=20.04;ReadPosRankSum=1.659;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:975,111,0 chrIV 743850 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1936,219,0 chrIV 744170 . C G 1347 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1380,156,0 chrIV 744329 . A T 2647 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.97;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2680,294,0 chrIV 744524 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.0662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1834,198,0 chrIV 745067 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=17.73;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1487,168,0 chrIV 745766 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.7298;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.96;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2269,246,0 chrIV 745856 . C A 1045 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.08;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1078,120,0 chrIV 745916 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1450,165,0 chrIV 745998 . A T 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.365;QD=21.59;ReadPosRankSum=1.595;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1674,180,0 chrIV 746034 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1888,201,0 chrIV 746167 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.99;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1400,150,0 chrIV 746186 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.97;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1659,177,0 chrIV 746245 . T A 1154 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.32;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1187,135,0 chrIV 746280 . T C 926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=3.188;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.554;QD=18.52;ReadPosRankSum=1.663;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:959,111,0 chrIV 747029 . T C 1361 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.01;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1394,156,0 chrIV 747487 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2940;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.86;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1382,156,0 chrIV 747517 . G A 253.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.578;DP=87;Dels=0.00;FS=1.901;HaplotypeScore=54.3264;MLEAC=1;MLEAF=0.500;MQ=44.63;MQ0=0;MQRankSum=-0.185;QD=2.91;ReadPosRankSum=1.125;SB=-2.840e+02 GT:AD:DP:GQ:PL 0/1:35,51:87:99:283,0,103 chrIV 747520 . G A 176.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;DP=81;Dels=0.00;FS=0.882;HaplotypeScore=57.3515;MLEAC=1;MLEAF=0.500;MQ=42.78;MQ0=0;MQRankSum=0.043;QD=2.17;ReadPosRankSum=1.563;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:40,41:81:99:206,0,110 chrIV 747523 . G A 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.053;DP=78;Dels=0.00;FS=4.605;HaplotypeScore=71.5792;MLEAC=1;MLEAF=0.500;MQ=41.44;MQ0=0;MQRankSum=-1.486;QD=0.71;ReadPosRankSum=0.327;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:44,34:78:85:85,0,128 chrIV 747532 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.851;DP=110;Dels=0.00;FS=13.587;HaplotypeScore=42.3738;MLEAC=1;MLEAF=0.500;MQ=47.21;MQ0=0;MQRankSum=-2.752;QD=0.16;ReadPosRankSum=0.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,19:110:47:47,0,332 chrIV 747579 . A C 1014 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=11.52;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1047,120,0 chrIV 747674 . A C 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.812;HaplotypeScore=11.9262;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.214;QD=15.66;ReadPosRankSum=-0.487;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1442,162,0 chrIV 748054 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.67;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1292,144,0 chrIV 748321 . T C 565 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=14.87;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:72:598,72,0 chrIV 748461 . G A 151.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:184,21,0 chrIV 748547 . C T 82.51 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:115,12,0 chrIV 749051 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.05;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2215,240,0 chrIV 749378 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2505,285,0 chrIV 749531 . G A 2419 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.03;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2452,276,0 chrIV 749726 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.97;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2186,237,0 chrIV 750464 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.47;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1300,141,0 chrIV 750698 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.94;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1898,204,0 chrIV 751285 . A G 1934 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.36;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1967,231,0 chrIV 751571 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.3426;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.52;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2938,318,0 chrIV 753314 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.35;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1233,144,0 chrIV 753357 . A G 755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.738;QD=17.98;ReadPosRankSum=2.333;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:93:788,93,0 chrIV 753858 . G A 2539 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.2897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2572,291,0 chrIV 754044 . G T 1781 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.36;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1814,201,0 chrIV 754071 . C G 1857 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.41;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1890,213,0 chrIV 755101 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.08;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1358,159,0 chrIV 755547 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.09;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1712,186,0 chrIV 757430 . T C 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.874;DP=103;Dels=0.00;FS=34.763;HaplotypeScore=3.5401;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=2;MQRankSum=3.012;QD=14.27;ReadPosRankSum=2.114;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:27,76:103:99:1503,151,0 chrIV 757439 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=2;QD=14.07;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1496,165,0 chrIV 757443 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.44;MQ0=2;QD=12.50;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1370,156,0 chrIV 757506 . A G 272 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=98;Dels=0.00;FS=5.468;HaplotypeScore=12.8356;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=16;MQRankSum=-0.920;QD=2.78;ReadPosRankSum=1.689;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:36:305,36,0 chrIV 757508 . G A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;DP=97;Dels=0.00;FS=8.902;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=16.77;MQ0=16;MQRankSum=4.015;QD=0.82;ReadPosRankSum=0.988;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:63,34:97:99:110,0,139 chrIV 757532 . C T 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.1639;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=15;MQRankSum=4.809;QD=3.16;ReadPosRankSum=0.561;SB=-3.950e+02 GT:AD:DP:GQ:PL 0/1:36,69:105:99:362,0,132 chrIV 757544 . C T 582 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=12;QD=6.13;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:72:615,72,0 chrIV 757562 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.911;DP=99;Dels=0.00;FS=12.803;HaplotypeScore=3.5228;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=10;MQRankSum=-1.721;QD=0.11;ReadPosRankSum=-0.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,9:99:40:40,0,357 chrIV 757580 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.347;DP=108;Dels=0.00;FS=37.287;HaplotypeScore=25.3437;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=1;MQRankSum=1.797;QD=0.14;ReadPosRankSum=-4.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,28:108:45:45,0,601 chrIV 757584 . A G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.441;DP=109;Dels=0.00;FS=56.836;HaplotypeScore=12.6977;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=0;MQRankSum=1.550;QD=0.20;ReadPosRankSum=-2.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,40:109:52:52,0,576 chrIV 757587 . C G 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DP=113;Dels=0.00;FS=62.164;HaplotypeScore=13.4864;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=0;MQRankSum=0.278;QD=0.19;ReadPosRankSum=-2.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,46:113:52:52,0,549 chrIV 757604 . G A 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DP=118;Dels=0.00;FS=69.943;HaplotypeScore=5.4797;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=0;MQRankSum=1.459;QD=1.82;ReadPosRankSum=0.256;SB=-2.360e+02 GT:AD:DP:GQ:PL 0/1:76,42:118:99:245,0,172 chrIV 757606 . A C 208.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.509;DP=118;Dels=0.00;FS=27.852;HaplotypeScore=6.6777;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=0;MQRankSum=0.331;QD=1.76;ReadPosRankSum=0.233;SB=-2.330e+02 GT:AD:DP:GQ:PL 0/1:80,38:118:99:238,0,189 chrIV 757616 . T C 288.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4881;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=1.043;QD=2.83;ReadPosRankSum=1.802;SB=-7.581e+01 GT:AD:DP:GQ:PL 0/1:4,98:102:4:318,0,4 chrIV 757622 . T C 121.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060;DP=93;Dels=0.00;FS=18.070;HaplotypeScore=4.2980;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=0;MQRankSum=-1.339;QD=1.30;ReadPosRankSum=-2.041;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:69,24:93:99:151,0,153 chrIV 757631 . G T 365 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=0;QD=4.51;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:45:398,45,0 chrIV 757635 . A G 342 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.76;MQ0=0;QD=4.22;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,81:81:45:375,45,0 chrIV 757644 . T C 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DP=72;Dels=0.00;FS=6.410;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=2;MQRankSum=2.371;QD=1.40;ReadPosRankSum=3.476;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,54:72:99:131,0,171 chrIV 757646 . A G 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;DP=71;Dels=0.00;FS=6.564;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=2;MQRankSum=1.642;QD=1.38;ReadPosRankSum=2.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,53:71:99:128,0,158 chrIV 757670 . C A 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.991;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=19.7234;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=12;MQRankSum=0.805;QD=1.43;ReadPosRankSum=2.407;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:47,58:109:99:186,0,276 chrIV 757698 . A G 2556 filter AC=2;AF=1.00;AN=2;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=35.5628;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=29;QD=11.83;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,213:216:99:2589,297,0 chrIV 757700 . G A 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DP=227;Dels=0.00;FS=0.645;HaplotypeScore=9.4230;MLEAC=1;MLEAF=0.500;MQ=33.25;MQ0=29;MQRankSum=-1.880;QD=0.65;ReadPosRankSum=7.091;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:180,46:227:99:178,0,1926 chrIV 757724 . C T 4530.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=421;Dels=0.00;FS=20.201;HaplotypeScore=37.5660;MLEAC=1;MLEAF=0.500;MQ=37.31;MQ0=35;MQRankSum=-0.744;QD=10.76;ReadPosRankSum=-0.967;SB=-2.259e+03 GT:AD:DP:GQ:PL 0/1:82,339:421:99:4530,0,435 chrIV 757814 . T A 803.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DP=352;Dels=0.00;FS=87.029;HaplotypeScore=62.9433;MLEAC=1;MLEAF=0.500;MQ=37.45;MQ0=2;MQRankSum=-5.872;QD=2.28;ReadPosRankSum=-1.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:217,135:352:99:833,0,3041 chrIV 757817 . A G 575.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.922;DP=351;Dels=0.00;FS=137.795;HaplotypeScore=55.7207;MLEAC=1;MLEAF=0.500;MQ=37.69;MQ0=2;MQRankSum=-5.351;QD=1.64;ReadPosRankSum=-0.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,105:351:99:605,0,3129 chrIV 757819 . C A 537.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.986;DP=353;Dels=0.00;FS=86.050;HaplotypeScore=67.6912;MLEAC=1;MLEAF=0.500;MQ=37.54;MQ0=4;MQRankSum=-4.668;QD=1.52;ReadPosRankSum=-1.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:239,108:353:99:567,0,3496 chrIV 757824 . T C 513.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;DP=352;Dels=0.00;FS=128.222;HaplotypeScore=68.4268;MLEAC=1;MLEAF=0.500;MQ=37.36;MQ0=6;MQRankSum=-7.407;QD=1.46;ReadPosRankSum=-3.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,128:352:99:543,0,3488 chrIV 757829 . T C 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.274;DP=356;Dels=0.00;FS=66.427;HaplotypeScore=89.7801;MLEAC=1;MLEAF=0.500;MQ=36.50;MQ0=14;MQRankSum=-8.152;QD=0.21;ReadPosRankSum=-2.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:234,122:356:99:106,0,3702 chrIV 757857 . T C 1503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.110;DP=519;Dels=0.00;FS=19.849;HaplotypeScore=46.0949;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=41;MQRankSum=-7.875;QD=2.90;ReadPosRankSum=1.325;SB=-5.710e+02 GT:AD:DP:GQ:PL 0/1:328,191:519:99:1533,0,4495 chrIV 757859 . A G 1451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;DP=539;Dels=0.00;FS=21.108;HaplotypeScore=42.9902;MLEAC=1;MLEAF=0.500;MQ=36.20;MQ0=47;MQRankSum=-8.265;QD=2.69;ReadPosRankSum=0.404;SB=-5.870e+02 GT:AD:DP:GQ:PL 0/1:334,188:539:99:1481,0,4559 chrIV 757883 . C A 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.835;DP=670;Dels=0.00;FS=37.050;HaplotypeScore=50.9567;MLEAC=1;MLEAF=0.500;MQ=37.04;MQ0=83;MQRankSum=2.630;QD=0.23;ReadPosRankSum=0.260;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:565,91:670:99:182,0,7709 chrIV 757961 . T C 639.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=535;Dels=0.00;FS=125.160;HaplotypeScore=23.9434;MLEAC=1;MLEAF=0.500;MQ=33.78;MQ0=55;MQRankSum=-9.066;QD=1.19;ReadPosRankSum=0.605;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:369,163:535:99:669,0,5228 chrIV 757963 . G A 689.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.992;DP=537;Dels=0.00;FS=110.412;HaplotypeScore=31.8302;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=54;MQRankSum=-9.572;QD=1.28;ReadPosRankSum=0.428;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:365,164:537:99:719,0,5122 chrIV 757969 . A C 672.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.792;DP=541;Dels=0.00;FS=74.657;HaplotypeScore=55.9738;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=42;MQRankSum=-8.779;QD=1.24;ReadPosRankSum=-1.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:355,171:541:99:702,0,5450 chrIV 758013 . G C 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=469;Dels=0.00;FS=51.954;HaplotypeScore=31.8852;MLEAC=1;MLEAF=0.500;MQ=33.30;MQ0=4;MQRankSum=4.278;QD=0.16;ReadPosRankSum=-9.979;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:386,76:469:99:107,0,5111 chrIV 758030 . A G 3393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658;DP=576;Dels=0.00;FS=25.923;HaplotypeScore=69.5147;MLEAC=1;MLEAF=0.500;MQ=35.03;MQ0=29;MQRankSum=-6.179;QD=5.89;ReadPosRankSum=9.382;SB=-1.833e+03 GT:AD:DP:GQ:PL 0/1:304,272:576:99:3393,0,3420 chrIV 758032 . C A 3498.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=13.742;DP=589;Dels=0.00;FS=17.963;HaplotypeScore=86.2375;MLEAC=1;MLEAF=0.500;MQ=35.02;MQ0=28;MQRankSum=-6.553;QD=5.94;ReadPosRankSum=7.593;SB=-1.788e+03 GT:AD:DP:GQ:PL 0/1:306,264:589:99:3498,0,3646 chrIV 758048 . C T 2072.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=11.906;DP=593;Dels=0.00;FS=15.403;HaplotypeScore=14.9425;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=47;MQRankSum=-4.686;QD=3.49;ReadPosRankSum=-5.506;SB=-1.013e+03 GT:AD:DP:GQ:PL 0/1:412,180:593:99:2102,0,5116 chrIV 758070 . T C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.196;DP=515;Dels=0.00;FS=48.738;HaplotypeScore=26.0926;MLEAC=1;MLEAF=0.500;MQ=34.70;MQ0=66;MQRankSum=-5.520;QD=0.05;ReadPosRankSum=-10.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:407,94:515:57:57,0,5620 chrIV 758096 . A C 4912.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.105;DP=380;Dels=0.00;FS=9.882;HaplotypeScore=35.3385;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=57;MQRankSum=3.314;QD=12.93;ReadPosRankSum=4.836;SB=-2.820e+03 GT:AD:DP:GQ:PL 1/1:26,348:380:99:4912,514,0 chrIV 758124 . A G 1412 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.625;DP=163;Dels=0.00;FS=24.970;HaplotypeScore=20.1846;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=34;MQRankSum=-5.010;QD=8.66;ReadPosRankSum=6.444;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:17,146:163:99:1445,171,0 chrIV 758150 . C T 246.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=1;MLEAF=0.500;MQ=18.03;MQ0=16;MQRankSum=-0.560;QD=3.46;ReadPosRankSum=3.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,56:71:94:276,0,94 chrIV 758162 . C T 525 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=13;QD=7.09;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:66:558,66,0 chrIV 758180 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;DP=95;Dels=0.00;FS=12.262;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=19.93;MQ0=17;MQRankSum=1.204;QD=0.57;ReadPosRankSum=4.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,19:95:84:84,0,525 chrIV 758240 . T C 1173 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.354;DP=262;Dels=0.00;FS=2.524;HaplotypeScore=10.3661;MLEAC=2;MLEAF=1.00;MQ=18.30;MQ0=107;MQRankSum=0.733;QD=4.48;ReadPosRankSum=5.278;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:60,202:262:66:1206,66,0 chrIV 758262 . C T 520.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.345;DP=259;Dels=0.00;FS=4.558;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=18.00;MQ0=107;MQRankSum=1.752;QD=2.01;ReadPosRankSum=-2.853;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:171,88:259:99:550,0,690 chrIV 758264 . G A 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.637;DP=258;Dels=0.00;FS=1.327;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=104;MQRankSum=1.313;QD=1.98;ReadPosRankSum=-2.455;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:173,85:258:99:542,0,730 chrIV 758288 . C A 423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;DP=206;Dels=0.00;FS=24.831;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=19.12;MQ0=66;MQRankSum=0.863;QD=2.05;ReadPosRankSum=1.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,60:206:99:453,0,927 chrIV 758306 . A G 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DP=174;Dels=0.00;FS=4.808;HaplotypeScore=6.4760;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=30;MQRankSum=-3.998;QD=0.29;ReadPosRankSum=3.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,56:174:80:80,0,1660 chrIV 758310 . T C 2375 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=178;Dels=0.00;FS=52.410;HaplotypeScore=13.5715;MLEAC=2;MLEAF=1.00;MQ=22.95;MQ0=20;MQRankSum=1.561;QD=13.34;ReadPosRankSum=3.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,169:178:99:2408,267,0 chrIV 758342 . T C 2232.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;DP=226;Dels=0.00;FS=0.000;HaplotypeScore=24.0586;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=52;MQRankSum=3.515;QD=9.88;ReadPosRankSum=3.165;SB=-5.652e+01 GT:AD:DP:GQ:PL 0/1:53,173:226:6:2262,0,6 chrIV 758348 . A G 1975.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;DP=250;Dels=0.00;FS=3.151;HaplotypeScore=22.3324;MLEAC=1;MLEAF=0.500;MQ=21.20;MQ0=64;MQRankSum=3.087;QD=7.90;ReadPosRankSum=4.422;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:84,166:250:99:2005,0,442 chrIV 758432 . T C 1103 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.910;DP=397;Dels=0.00;FS=6.837;HaplotypeScore=15.4940;MLEAC=2;MLEAF=1.00;MQ=13.79;MQ0=240;MQRankSum=1.452;QD=2.78;ReadPosRankSum=0.878;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,367:397:99:1136,122,0 chrIV 758454 . C T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.114;DP=368;Dels=0.00;FS=4.959;HaplotypeScore=11.9711;MLEAC=1;MLEAF=0.500;MQ=13.49;MQ0=220;MQRankSum=-1.629;QD=0.16;ReadPosRankSum=-2.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:274,87:368:88:88,0,557 chrIV 758456 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;DP=350;Dels=0.00;FS=2.130;HaplotypeScore=6.4503;MLEAC=1;MLEAF=0.500;MQ=13.38;MQ0=210;MQRankSum=-1.584;QD=0.06;ReadPosRankSum=-3.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,82:350:51:51,0,561 chrIV 758508 . A G 528 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.347;DP=163;Dels=0.00;FS=2.207;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=73;MQRankSum=-1.858;QD=3.24;ReadPosRankSum=5.549;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:24,139:163:66:561,66,0 chrIV 758534 . C T 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DP=82;Dels=0.00;FS=2.437;HaplotypeScore=2.5740;MLEAC=1;MLEAF=0.500;MQ=12.48;MQ0=45;MQRankSum=-0.206;QD=2.05;ReadPosRankSum=1.717;SB=-6.793e-03 GT:AD:DP:GQ:PL 0/1:43,38:82:39:198,0,39 chrIV 758546 . C T 301 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.50;MQ0=32;QD=5.02;SB=-7.338e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:39:334,39,0 chrIV 758700 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.57;MQ0=36;QD=0.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:6:53,6,0 chrIV 758732 . A G 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.88;MQ0=45;MQRankSum=0.720;QD=0.92;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,27:51:9:79,9,0 chrIV 758738 . C T 50.97 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.25;MQ0=40;QD=1.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:9:83,9,0 chrIV 758756 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.08;MQ0=31;QD=1.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,30:37:9:81,9,0 chrIV 758918 . T C 1098 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DP=358;Dels=0.00;FS=14.377;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=7.76;MQ0=258;MQRankSum=1.079;QD=3.07;ReadPosRankSum=0.375;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:34,322:358:99:1131,138,0 chrIV 758924 . A G 1045 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;DP=347;Dels=0.00;FS=43.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.93;MQ0=250;MQRankSum=2.907;QD=3.01;ReadPosRankSum=2.327;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:60,287:347:99:1078,132,0 chrIV 759017 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.74;MQ0=24;QD=0.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:6:51,6,0 chrIV 759021 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.02;MQ0=33;QD=0.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:38:6:48,6,0 chrIV 759110 . T C 14.20 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=4.70;MQ0=155;MQRankSum=0.365;QD=0.09;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,100:165:19:44,0,19 chrIV 759140 . A G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=6.84;MQ0=175;MQRankSum=0.662;QD=0.20;ReadPosRankSum=-0.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,40:196:70:70,0,184 chrIV 759200 . T C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;DP=336;Dels=0.00;FS=52.235;HaplotypeScore=15.8634;MLEAC=1;MLEAF=0.500;MQ=15.43;MQ0=180;MQRankSum=-0.235;QD=0.05;ReadPosRankSum=4.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,158:336:45:45,0,1040 chrIV 759248 . C A 2681 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.043;DP=372;Dels=0.00;FS=6.158;HaplotypeScore=10.2875;MLEAC=2;MLEAF=1.00;MQ=19.04;MQ0=128;MQRankSum=1.969;QD=7.21;ReadPosRankSum=5.512;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:80,289:372:99:2714,108,0 chrIV 759302 . T C 1155 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;DP=216;Dels=0.00;FS=9.272;HaplotypeScore=12.7196;MLEAC=2;MLEAF=1.00;MQ=15.25;MQ0=144;MQRankSum=3.876;QD=5.35;ReadPosRankSum=0.074;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:56,160:216:51:1188,51,0 chrIV 759308 . A G 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DP=208;Dels=0.00;FS=72.344;HaplotypeScore=9.7317;MLEAC=1;MLEAF=0.500;MQ=14.69;MQ0=144;MQRankSum=-3.711;QD=0.30;ReadPosRankSum=0.918;SB=2.117e-03 GT:AD:DP:GQ:PL 0/1:96,112:208:92:92,0,900 chrIV 759392 . T C 810 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.277;DP=243;Dels=0.00;FS=19.857;HaplotypeScore=6.1406;MLEAC=2;MLEAF=1.00;MQ=15.89;MQ0=135;MQRankSum=1.995;QD=3.33;ReadPosRankSum=-0.153;SB=-5.996e+00 GT:AD:DP:GQ:PL 1/1:85,156:243:56:843,56,0 chrIV 759414 . C T 567.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.025;DP=228;Dels=0.00;FS=52.309;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.00;MQ0=127;MQRankSum=3.350;QD=2.49;ReadPosRankSum=-0.530;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:175,49:228:20:597,0,20 chrIV 759416 . G A 505.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=222;Dels=0.00;FS=53.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.06;MQ0=123;MQRankSum=3.412;QD=2.27;ReadPosRankSum=-0.884;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:171,51:222:19:535,0,19 chrIV 759468 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.402;DP=92;Dels=0.00;FS=9.066;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=7.89;MQ0=65;MQRankSum=0.905;QD=0.20;ReadPosRankSum=3.402;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:30,62:92:6:50,6,0 chrIV 759650 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;DP=57;Dels=0.00;FS=82.280;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.99;MQ0=13;MQRankSum=0.693;QD=0.39;ReadPosRankSum=-1.071;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,30:57:52:52,0,125 chrIV 759660 . A G 218 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=13;QD=3.69;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:30:251,30,0 chrIV 759662 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;DP=58;Dels=0.00;FS=76.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.79;MQ0=12;MQRankSum=0.561;QD=0.66;ReadPosRankSum=-2.879;SB=-2.602e+01 GT:AD:DP:GQ:PL 0/1:25,33:58:68:68,0,123 chrIV 759686 . T C 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;DP=64;Dels=0.00;FS=43.065;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=11;MQRankSum=2.522;QD=4.39;ReadPosRankSum=-0.658;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:12,52:64:47:311,0,47 chrIV 759692 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=62;Dels=0.00;FS=36.852;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=9;MQRankSum=-2.377;QD=0.20;ReadPosRankSum=0.355;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,9:62:42:42,0,338 chrIV 759714 . A G 606 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.491;DP=57;Dels=0.00;FS=22.426;HaplotypeScore=2.7569;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;MQRankSum=2.355;QD=10.63;ReadPosRankSum=4.491;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:8,49:57:78:639,78,0 chrIV 759716 . G A 668 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;MQRankSum=0.933;QD=12.60;ReadPosRankSum=1.466;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:81:701,81,0 chrIV 759718 . A C 654 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=3.168;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;MQRankSum=0.990;QD=11.47;ReadPosRankSum=1.609;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:81:687,81,0 chrIV 760152 . A G 1231 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.23;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1264,144,0 chrIV 760350 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.60;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1796,201,0 chrIV 761335 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.30;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1226,141,0 chrIV 761375 . T C 980 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.85;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1013,117,0 chrIV 762896 . T A 1992 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.75;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2025,234,0 chrIV 763036 . T C 2063 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.9441;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.23;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2096,240,0 chrIV 763076 . A T 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.73;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2336,258,0 chrIV 763207 . A G 2690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=136;Dels=0.00;FS=6.015;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.474;QD=19.78;ReadPosRankSum=2.948;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2723,321,0 chrIV 764003 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.55;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1443,156,0 chrIV 764690 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.86;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1026,111,0 chrIV 764691 . G A 991 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.43;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1024,111,0 chrIV 764817 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.01;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1672,189,0 chrIV 764844 . T A 1681 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.55;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1714,192,0 chrIV 765216 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.80;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1300,141,0 chrIV 765331 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.35;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1697,183,0 chrIV 765398 . T A 2234 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.60;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2267,252,0 chrIV 765617 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1322,141,0 chrIV 766047 . A C 1719 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.22;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1752,201,0 chrIV 766110 . A G 2617 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2365;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.61;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2650,306,0 chrIV 766577 . A T 122.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=9.155;HaplotypeScore=81.8152;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.518;QD=1.39;ReadPosRankSum=2.394;SB=-7.811e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:18:155,18,0 chrIV 766688 . T G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.43;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3322,378,0 chrIV 766802 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.10;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1573,180,0 chrIV 767007 . C T 2586 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=17.13;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2619,285,0 chrIV 767334 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.59;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2207,240,0 chrIV 767443 . A G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3406;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.548;QD=18.61;ReadPosRankSum=1.701;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2155,237,0 chrIV 767552 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.07;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2401,276,0 chrIV 768037 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.89;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1246,141,0 chrIV 768366 . C A 772 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.79;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:805,87,0 chrIV 768390 . T A 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=4.771;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.444;QD=18.73;ReadPosRankSum=1.660;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:932,102,0 chrIV 769171 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1088;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.00;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1903,213,0 chrIV 769356 . G T 924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=52;Dels=0.00;FS=4.856;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.067;QD=17.77;ReadPosRankSum=0.000;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:89:957,89,0 chrIV 769373 . A G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.804;QD=19.84;ReadPosRankSum=2.333;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1283,144,0 chrIV 769896 . T C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=3.216;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.626;QD=17.22;ReadPosRankSum=1.679;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1152,132,0 chrIV 770035 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5141;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.81;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1380,153,0 chrIV 770047 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.13;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1315,150,0 chrIV 770153 . T C 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=6.842;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.777;QD=14.93;ReadPosRankSum=1.673;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:899,99,0 chrIV 770297 . T C 3061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.6580;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.559;QD=23.55;ReadPosRankSum=1.105;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,126:130:99:3094,351,0 chrIV 770352 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.37;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1482,162,0 chrIV 770731 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.79;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1821,207,0 chrIV 770854 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.80;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1300,141,0 chrIV 771211 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.221;QD=18.76;ReadPosRankSum=1.695;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1796,210,0 chrIV 771632 . T A 2715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=128;Dels=0.00;FS=10.604;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.829;QD=21.21;ReadPosRankSum=4.109;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:6,122:128:99:2748,309,0 chrIV 771858 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.43;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1957,213,0 chrIV 772698 . A G 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=3.872;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.139;QD=20.80;ReadPosRankSum=1.697;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2134,255,0 chrIV 773193 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:968,114,0 chrIV 773522 . A G 997 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.67;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1030,114,0 chrIV 773652 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.81;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1618,180,0 chrIV 773670 . T C 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.317;QD=18.25;ReadPosRankSum=1.683;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1329,153,0 chrIV 773703 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=15.77;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1295,138,0 chrIV 773706 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.31;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1221,132,0 chrIV 773757 . T A 1224 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=16.77;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1257,138,0 chrIV 773804 . T C 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.397;QD=24.69;ReadPosRankSum=1.649;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2082,234,0 chrIV 773893 . G C 1217 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1250,144,0 chrIV 773985 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.98;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1940,219,0 chrIV 774079 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.03;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1457,162,0 chrIV 774109 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=2.622;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.009;QD=18.27;ReadPosRankSum=2.386;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1458,168,0 chrIV 774288 . A C 779 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.93;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:812,93,0 chrIV 774504 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.98;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1963,219,0 chrIV 774536 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.25;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1546,171,0 chrIV 774582 . G T 1079 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1112,123,0 chrIV 774730 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8740;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.58;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1443,165,0 chrIV 774849 . T C 1995 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.68;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2028,237,0 chrIV 775287 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3479;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.383;QD=22.79;ReadPosRankSum=1.609;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2631,297,0 chrIV 775518 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1809,204,0 chrIV 775554 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.41;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1819,210,0 chrIV 775671 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=96;Dels=0.00;FS=7.174;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.331;QD=18.66;ReadPosRankSum=1.655;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:2,91:96:99:1824,192,0 chrIV 775744 . T C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=5.462;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.374;QD=21.04;ReadPosRankSum=1.698;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2179,246,0 chrIV 775941 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.90;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1945,213,0 chrIV 775992 . T A 1490 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.95;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1523,162,0 chrIV 775997 . A G 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.01;FS=3.900;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.192;QD=15.44;ReadPosRankSum=1.689;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1299,150,0 chrIV 776086 . G A 3197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.7124;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.873;QD=23.86;ReadPosRankSum=-1.029;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:3230,345,0 chrIV 776219 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.75;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2253,258,0 chrIV 776259 . C A 2012 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.53;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2045,231,0 chrIV 776284 . C G 1560 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.73;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1593,183,0 chrIV 776360 . G T 1643 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.04;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1676,180,0 chrIV 776432 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.57;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2039,231,0 chrIV 776603 . A G 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.091;QD=21.51;ReadPosRankSum=1.689;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1775,201,0 chrIV 776627 . A G 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.01;FS=4.533;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.195;QD=19.81;ReadPosRankSum=1.683;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1479,165,0 chrIV 776679 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.40;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1155,132,0 chrIV 776715 . A G 928 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:961,108,0 chrIV 776907 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8124;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.53;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1799,207,0 chrIV 777029 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.2488;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.31;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1887,213,0 chrIV 777389 . C T 3179 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.05;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3212,351,0 chrIV 777438 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.75;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1927,216,0 chrIV 777449 . A C 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=4.9870;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.657;QD=21.46;ReadPosRankSum=1.573;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1900,216,0 chrIV 777638 . A C 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=2.993;HaplotypeScore=17.8326;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.050;QD=20.37;ReadPosRankSum=2.353;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2111,240,0 chrIV 778122 . C T 2810 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.13;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2843,306,0 chrIV 778301 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.74;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2605,288,0 chrIV 778415 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5172;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.79;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2107,225,0 chrIV 778463 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3238;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.19;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1579,180,0 chrIV 778694 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=19.28;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1402,153,0 chrIV 778709 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=18.20;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1198,132,0 chrIV 778721 . G A 1051 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=19.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1084,120,0 chrIV 778722 . G A 997 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=18.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1030,117,0 chrIV 778856 . C A 128.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=12.81;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:161,18,0 chrIV 778868 . C A 154.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=14.01;SB=-2.907e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:187,21,0 chrIV 779427 . G A 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.427;QD=20.97;ReadPosRankSum=1.372;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1669,192,0 chrIV 780011 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.10;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1601,183,0 chrIV 780027 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.80;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1424,165,0 chrIV 780200 . T A 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=113;Dels=0.00;FS=3.424;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.283;QD=21.77;ReadPosRankSum=1.669;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2493,279,0 chrIV 780618 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.61;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2362,273,0 chrIV 780939 . G T 1923 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.46;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1956,213,0 chrIV 780966 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.41;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1819,213,0 chrIV 780987 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.81;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1801,201,0 chrIV 781103 . T C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=94;Dels=0.00;FS=9.086;HaplotypeScore=5.8541;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.337;QD=19.60;ReadPosRankSum=2.397;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:1875,213,0 chrIV 781421 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.68;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1394,153,0 chrIV 781568 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.7949;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.10;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2243,243,0 chrIV 781624 . A G 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.244;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.093;QD=23.53;ReadPosRankSum=1.695;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2245,255,0 chrIV 781717 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.21;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1410,153,0 chrIV 782410 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.23;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1379,153,0 chrIV 782464 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1469,165,0 chrIV 782863 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1894,219,0 chrIV 783163 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.97;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1664,186,0 chrIV 783285 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.10;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2344,267,0 chrIV 784060 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4655;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.27;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1806,204,0 chrIV 784297 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=2.694;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.423;QD=20.46;ReadPosRankSum=2.398;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1997,231,0 chrIV 784537 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.87;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1680,180,0 chrIV 785156 . C A 1181 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1214,141,0 chrIV 785443 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.09;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2021,225,0 chrIV 785712 . A G 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.048;QD=16.92;ReadPosRankSum=0.385;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1251,141,0 chrIV 785881 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.46;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1813,204,0 chrIV 785924 . A T 2375 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.3771;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.59;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2408,261,0 chrIV 786028 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.41;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1382,153,0 chrIV 786128 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.88;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1067,120,0 chrIV 786657 . T C 936 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.10;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:969,111,0 chrIV 786948 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.51;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1586,171,0 chrIV 787254 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.48;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1414,162,0 chrIV 787523 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1258,135,0 chrIV 787601 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=18.41;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:935,99,0 chrIV 787605 . G A 883 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=18.02;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:916,102,0 chrIV 787632 . T C 1000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=4.843;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.880;QD=16.39;ReadPosRankSum=-0.540;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1033,117,0 chrIV 787649 . A G 1023 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=14.83;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1056,120,0 chrIV 788247 . C T 634 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.61;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:667,75,0 chrIV 788526 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.24;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:620,69,0 chrIV 788528 . A G 487 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.73;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:520,60,0 chrIV 788889 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.93;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1603,183,0 chrIV 789368 . T A 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=3.163;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.976;QD=20.74;ReadPosRankSum=1.653;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1879,210,0 chrIV 789392 . C A 1848 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.76;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1881,213,0 chrIV 790177 . A G 2253 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.76;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2286,252,0 chrIV 790216 . G T 1747 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.31;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1780,198,0 chrIV 790276 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=67.0336;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.60;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1595,174,0 chrIV 790323 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=12.5234;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.98;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1202,135,0 chrIV 790489 . A G 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.577;QD=19.51;ReadPosRankSum=1.686;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1496,174,0 chrIV 790950 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.28;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1270,141,0 chrIV 791272 . G C 966 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.23;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:999,117,0 chrIV 791482 . A G 663 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.94;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:696,81,0 chrIV 791869 . C T 628 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.44;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:661,72,0 chrIV 792334 . C T 3076 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3109,336,0 chrIV 792541 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2355;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.62;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1818,204,0 chrIV 792642 . C G 2352 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.76;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2385,261,0 chrIV 793089 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.29;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,186,0 chrIV 793254 . T C 1763 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.74;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1796,204,0 chrIV 793726 . A T 1032 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.47;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1065,120,0 chrIV 793822 . C T 811 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7221;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=13.75;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:844,93,0 chrIV 793980 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.31;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1706,192,0 chrIV 794057 . T C 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.143;QD=21.96;ReadPosRankSum=1.691;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1900,216,0 chrIV 794676 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=16.59;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1609,177,0 chrIV 794820 . T C 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.133;QD=20.32;ReadPosRankSum=1.688;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1618,183,0 chrIV 795421 . T G 1799 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.68;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1832,213,0 chrIV 795466 . T C 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.192;QD=13.59;ReadPosRankSum=1.662;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1392,159,0 chrIV 795469 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=14.15;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1406,153,0 chrIV 795537 . C G 1810 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=15.74;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1843,216,0 chrIV 795559 . T C 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.630;QD=18.60;ReadPosRankSum=1.698;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:1967,225,0 chrIV 795652 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=17.13;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2363,261,0 chrIV 795663 . G A 2124 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=15.17;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2157,237,0 chrIV 795676 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=13.32;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1805,207,0 chrIV 795696 . A T 1719 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=13.33;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1752,189,0 chrIV 795718 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=12.53;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1486,174,0 chrIV 796093 . T C 2829 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.19;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2862,324,0 chrIV 796580 . A T 930 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.03;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:963,108,0 chrIV 796727 . G C 2739 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.09;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2772,315,0 chrIV 797366 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.16;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1940,210,0 chrIV 797372 . A G 1794 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=16.92;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1827,201,0 chrIV 797669 . T C 2312 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.1820;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.10;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2345,264,0 chrIV 798095 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.49;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1959,222,0 chrIV 798512 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.08;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1208,132,0 chrIV 798584 . A C 1349 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.08;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1382,156,0 chrIV 798980 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.49;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1495,165,0 chrIV 799118 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1286,147,0 chrIV 799997 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.83;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1866,213,0 chrIV 800015 . T C 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.26;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1670,192,0 chrIV 800174 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2123,234,0 chrIV 800342 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.47;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1957,210,0 chrIV 800393 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=4.037;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.185;QD=21.18;ReadPosRankSum=1.641;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1643,189,0 chrIV 800479 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.9112;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.48;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1472,162,0 chrIV 800855 . T G 1233 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=16.66;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1266,144,0 chrIV 800862 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=17.56;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1350,147,0 chrIV 800984 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.90;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1789,198,0 chrIV 801463 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.86;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1533,177,0 chrIV 801527 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.82;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2315,252,0 chrIV 801845 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.52;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2023,225,0 chrIV 801939 . C T 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.021;DP=155;Dels=0.00;FS=1.761;HaplotypeScore=72.6557;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.672;QD=14.90;ReadPosRankSum=-4.556;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:28,127:155:99:2343,258,0 chrIV 801982 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.94;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2745,300,0 chrIV 802100 . A G 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.753;DP=95;Dels=0.00;FS=5.475;HaplotypeScore=3.7742;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.032;QD=17.00;ReadPosRankSum=2.925;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:1648,189,0 chrIV 802112 . A T 1608 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.24;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1641,183,0 chrIV 802553 . A C 1159 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.32;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1192,138,0 chrIV 802610 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=21.16;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:943,108,0 chrIV 802620 . C T 1113 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=22.26;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1146,129,0 chrIV 802627 . A C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=54;Dels=0.00;FS=5.816;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-0.642;QD=18.98;ReadPosRankSum=2.870;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1058,123,0 chrIV 802694 . A T 1445 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=24.49;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1478,165,0 chrIV 802822 . T G 722 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=18.05;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:755,87,0 chrIV 802824 . C T 752 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=19.28;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:785,84,0 chrIV 802842 . A C 435 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=17.40;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:57:468,57,0 chrIV 802863 . C T 71.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.053;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-1.287;QD=2.86;ReadPosRankSum=-0.027;SB=2.49 GT:AD:DP:GQ:PL 1/1:14,11:25:12:104,12,0 chrIV 802878 . T A 219.01 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=9.52;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:252,27,0 chrIV 802905 . T C 350 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.323;DP=33;Dels=0.00;FS=36.955;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=1;MQRankSum=2.780;QD=10.61;ReadPosRankSum=2.586;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:4,29:33:45:383,45,0 chrIV 802914 . A T 325 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=32;Dels=0.00;FS=36.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=1;MQRankSum=2.773;QD=10.16;ReadPosRankSum=-2.840;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:4,28:32:42:358,42,0 chrIV 802915 . A G 326 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.902;DP=32;Dels=0.00;FS=36.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=1;MQRankSum=2.773;QD=10.19;ReadPosRankSum=-2.840;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:4,28:32:42:359,42,0 chrIV 803334 . T C 48.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.72;MQ0=2;QD=6.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:8:9:81,9,0 chrIV 803559 . C A 1906.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.507;DP=197;Dels=0.00;FS=1.133;HaplotypeScore=17.5909;MLEAC=1;MLEAF=0.500;MQ=35.68;MQ0=1;MQRankSum=1.801;QD=9.68;ReadPosRankSum=-1.371;SB=-9.470e+02 GT:AD:DP:GQ:PL 0/1:83,110:197:99:1936,0,1294 chrIV 803622 . C T 1107 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.115;DP=122;Dels=0.00;FS=45.046;HaplotypeScore=8.8373;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=9;MQRankSum=2.840;QD=9.07;ReadPosRankSum=-0.847;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:11,111:122:73:1140,73,0 chrIV 803639 . G A 600.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=102;Dels=0.00;FS=78.902;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=10;MQRankSum=3.332;QD=5.89;ReadPosRankSum=0.448;SB=-3.443e+02 GT:AD:DP:GQ:PL 1/1:16,86:102:14:633,14,0 chrIV 803806 . A G 35.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;DP=27;Dels=0.00;FS=11.181;HaplotypeScore=7.2286;MLEAC=1;MLEAF=0.500;MQ=14.95;MQ0=17;MQRankSum=1.133;QD=1.30;ReadPosRankSum=0.000;SB=-4.929e-02 GT:AD:DP:GQ:PL 0/1:17,9:27:17:65,0,17 chrIV 803880 . T C 891 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.583;DP=122;Dels=0.00;FS=98.947;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=33;MQRankSum=-4.655;QD=7.30;ReadPosRankSum=4.640;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:8,114:122:99:924,105,0 chrIV 803989 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=81;Dels=0.00;FS=2.958;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=15.75;MQ0=28;MQRankSum=-2.667;QD=0.26;ReadPosRankSum=1.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,42:81:51:51,0,150 chrIV 804189 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.92;MQ0=56;QD=0.77;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:1,60:61:9:79,9,0 chrIV 805589 . T G 582 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=1;QD=17.64;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:615,72,0 chrIV 805615 . G A 832 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=1;QD=19.81;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:865,93,0 chrIV 805636 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=21.70;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1031,117,0 chrIV 805798 . A G 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.400;QD=22.26;ReadPosRankSum=1.679;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1480,171,0 chrIV 805830 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=23.03;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1553,174,0 chrIV 806078 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.16;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1263,141,0 chrIV 806135 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=24.02;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1546,177,0 chrIV 806142 . G T 1624 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=25.37;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1657,177,0 chrIV 806233 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.76;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1653,180,0 chrIV 806251 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.57;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1481,159,0 chrIV 806292 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.35;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1126,126,0 chrIV 806407 . T C 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.553;QD=22.34;ReadPosRankSum=1.673;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1329,147,0 chrIV 806486 . G C 1117 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=12.01;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1150,129,0 chrIV 806513 . T C 908 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=9.36;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:941,105,0 chrIV 806514 . T C 885 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=9.12;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:918,105,0 chrIV 806516 . T C 906 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=2.605;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;MQRankSum=-2.210;QD=8.97;ReadPosRankSum=2.931;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:939,108,0 chrIV 806528 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=10.86;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1358,159,0 chrIV 806564 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=14.66;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2232,252,0 chrIV 806584 . T C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.390;DP=152;Dels=0.00;FS=2.411;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-0.858;QD=16.46;ReadPosRankSum=3.401;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:4,148:152:99:2535,294,0 chrIV 806752 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.688;HaplotypeScore=9.6131;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.610;QD=22.67;ReadPosRankSum=0.031;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2731,306,0 chrIV 806884 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.40;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2572,282,0 chrIV 807091 . C T 3071 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.81;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,153:155:99:3104,354,0 chrIV 807121 . A G 3193 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.47;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3226,372,0 chrIV 807222 . T C 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=92;Dels=0.00;FS=3.033;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.582;QD=19.24;ReadPosRankSum=2.396;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1803,210,0 chrIV 807409 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.25;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1896,219,0 chrIV 807420 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.6598;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.58;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2021,219,0 chrIV 807916 . T G 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=2.999;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.949;QD=15.11;ReadPosRankSum=2.362;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:879,102,0 chrIV 808161 . A C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=87;Dels=0.00;FS=10.644;HaplotypeScore=70.7478;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.338;QD=18.02;ReadPosRankSum=2.919;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1601,180,0 chrIV 808521 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.29;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1737,195,0 chrIV 808649 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.08;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2004,231,0 chrIV 808808 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.32;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2177,234,0 chrIV 808830 . T A 2149 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.02;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2182,237,0 chrIV 808940 . C A 1744 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.01;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1777,195,0 chrIV 808977 . T C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=6.762;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.139;QD=17.72;ReadPosRankSum=2.388;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1451,165,0 chrIV 808996 . C G 1657 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=16.57;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1690,192,0 chrIV 809670 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.19;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2335,252,0 chrIV 809988 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.3709;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.62;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2329,261,0 chrIV 810443 . A C 913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.751;QD=17.23;ReadPosRankSum=2.868;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,50:53:99:946,108,0 chrIV 810702 . C T 417 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.37;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:48:450,48,0 chrIV 811032 . A G 1123 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.0172;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.83;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1156,132,0 chrIV 811177 . T C 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=4.459;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.474;QD=16.54;ReadPosRankSum=1.681;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1141,129,0 chrIV 811480 . T C 1015 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.52;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1048,117,0 chrIV 811697 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8982;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.52;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1838,207,0 chrIV 811787 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7023;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.82;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1496,171,0 chrIV 811792 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9838;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=16.92;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1539,168,0 chrIV 811992 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.61;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1190,129,0 chrIV 812580 . A G 1528 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.84;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1561,177,0 chrIV 812940 . T C 482 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.37;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:57:515,57,0 chrIV 813568 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.10;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2525,288,0 chrIV 814094 . T C 2000 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.18;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2033,228,0 chrIV 814114 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.076;QD=17.75;ReadPosRankSum=1.696;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1719,195,0 chrIV 814278 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.19;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1808,195,0 chrIV 814586 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.54;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2025,234,0 chrIV 815156 . T A 597 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:630,69,0 chrIV 815495 . A G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=6.569;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.264;QD=22.32;ReadPosRankSum=1.674;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1350,153,0 chrIV 815632 . G A 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=89;Dels=0.00;FS=6.021;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.102;QD=24.33;ReadPosRankSum=1.693;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2198,212,0 chrIV 815666 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.51;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1756,201,0 chrIV 815797 . C G 2307 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.40;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2340,267,0 chrIV 815851 . A G 2430 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.37;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2463,282,0 chrIV 815880 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.41;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1938,207,0 chrIV 816494 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.04;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1840,210,0 chrIV 816619 . G A 2824 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.3001;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.61;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2857,306,0 chrIV 816808 . A C 2314 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.85;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2347,267,0 chrIV 816967 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.34;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2188,252,0 chrIV 817216 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.153;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.732;QD=22.74;ReadPosRankSum=1.704;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2876,327,0 chrIV 817854 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.51;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1924,213,0 chrIV 819389 . G A 888 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.73;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:921,102,0 chrIV 819556 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=21.59;ReadPosRankSum=1.207;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1458,142,0 chrIV 819993 . T C 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DP=75;Dels=0.00;FS=6.943;HaplotypeScore=5.8485;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=2.055;QD=19.92;ReadPosRankSum=2.384;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1527,152,0 chrIV 820028 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.83;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1692,183,0 chrIV 820213 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.38;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1496,165,0 chrIV 820254 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.08;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1150,135,0 chrIV 820335 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.63;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1285,147,0 chrIV 820345 . A G 1254 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.72;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1287,147,0 chrIV 820419 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.56;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2219,234,0 chrIV 820472 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.732;QD=21.67;ReadPosRankSum=1.586;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,70:73:99:1615,186,0 chrIV 820638 . T C 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.683;QD=23.57;ReadPosRankSum=1.683;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1683,189,0 chrIV 820777 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.11;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2228,243,0 chrIV 820879 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.0340;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.45;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2092,228,0 chrIV 820921 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.19;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2072,228,0 chrIV 820927 . G C 1843 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.82;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1876,222,0 chrIV 821234 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.16;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1162,129,0 chrIV 821264 . A T 1220 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.79;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1253,135,0 chrIV 821309 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.28;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1128,120,0 chrIV 821327 . T C 946 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.92;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:979,108,0 chrIV 821485 . T C 1111 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.63;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1144,129,0 chrIV 821498 . T C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.334;QD=17.18;ReadPosRankSum=1.672;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1012,114,0 chrIV 821555 . A G 844 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.35;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:877,99,0 chrIV 821822 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.79;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1141,132,0 chrIV 822225 . G C 949 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.19;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:982,111,0 chrIV 822347 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.97;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1690,183,0 chrIV 822353 . T A 1484 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.53;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1517,168,0 chrIV 822554 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.98;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1343,156,0 chrIV 822572 . T A 1711 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.51;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1744,192,0 chrIV 822719 . T C 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=3.612;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.284;QD=20.85;ReadPosRankSum=1.691;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1847,207,0 chrIV 822933 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0807;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.18;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1663,189,0 chrIV 823198 . T G 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.357;QD=20.33;ReadPosRankSum=1.622;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1314,150,0 chrIV 823234 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.66;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1022,117,0 chrIV 823240 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1119,120,0 chrIV 823316 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=16.39;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1213,138,0 chrIV 825422 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.15;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1894,216,0 chrIV 825834 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.75;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2230,252,0 chrIV 825848 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.59;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2051,231,0 chrIV 826141 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.590;QD=17.80;ReadPosRankSum=2.364;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1564,177,0 chrIV 826861 . G A 1245 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.47;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1278,147,0 chrIV 826983 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.216;QD=21.27;ReadPosRankSum=1.695;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2054,234,0 chrIV 827102 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1413,156,0 chrIV 827442 . A T 1214 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.80;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1247,135,0 chrIV 827581 . T C 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=64;Dels=0.00;FS=2.580;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.254;QD=19.81;ReadPosRankSum=2.257;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1301,147,0 chrIV 828355 . T C 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.328;QD=19.45;ReadPosRankSum=1.559;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1200,135,0 chrIV 828416 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.34;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1561,171,0 chrIV 828748 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1729,198,0 chrIV 828858 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.57;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1617,174,0 chrIV 828919 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1608,183,0 chrIV 829387 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=72;Dels=0.00;FS=6.586;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.011;QD=19.83;ReadPosRankSum=2.381;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1461,165,0 chrIV 829827 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5850;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.17;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2404,270,0 chrIV 830274 . A T 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=75;Dels=0.00;FS=9.401;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.376;QD=19.72;ReadPosRankSum=3.309;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1512,168,0 chrIV 830619 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1847,210,0 chrIV 830754 . A T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=5.859;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.232;QD=20.53;ReadPosRankSum=2.794;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1737,186,0 chrIV 831797 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.65;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1458,159,0 chrIV 831877 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1674,189,0 chrIV 832054 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.02;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2220,252,0 chrIV 832547 . A G 1156 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.02;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1189,138,0 chrIV 832597 . A G 682 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.94;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:715,81,0 chrIV 832844 . T G 1769 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.33;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1802,213,0 chrIV 832857 . T G 1333 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.32;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1366,159,0 chrIV 833173 . G T 2290 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5752;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.63;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2323,261,0 chrIV 833455 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.314;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.577;QD=19.71;ReadPosRankSum=1.700;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2181,249,0 chrIV 833459 . T C 2162 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.83;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2195,249,0 chrIV 833693 . A G 2266 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=12.5406;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.98;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2299,258,0 chrIV 833729 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.48;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1622,186,0 chrIV 833732 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.50;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1587,180,0 chrIV 833772 . G T 876 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=14.60;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:909,99,0 chrIV 834212 . T C 2717 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.13;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2750,312,0 chrIV 834242 . T C 2653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.0979;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.254;QD=18.55;ReadPosRankSum=-0.521;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2686,300,0 chrIV 834320 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.16;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1795,204,0 chrIV 834790 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.47;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:938,102,0 chrIV 834899 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1238,141,0 chrIV 835319 . T C 2168 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1534;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.47;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2201,246,0 chrIV 836028 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=17.45;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1324,147,0 chrIV 836148 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.05;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2033,228,0 chrIV 836356 . A G 2368 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.9343;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.33;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2401,273,0 chrIV 836436 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.49;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3265,372,0 chrIV 836558 . T G 1813 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.33;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1846,210,0 chrIV 836708 . T C 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=110;Dels=0.00;FS=4.021;HaplotypeScore=8.4266;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.261;QD=18.99;ReadPosRankSum=1.699;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2122,237,0 chrIV 836867 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3938;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.09;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2176,237,0 chrIV 837275 . T C 2023 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.23;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2056,240,0 chrIV 837527 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.95;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1833,198,0 chrIV 837638 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.4285;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.35;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2336,261,0 chrIV 837953 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.95;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1033,114,0 chrIV 838114 . T C 119.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=11.91;SB=-5.111e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:152,18,0 chrIV 838119 . G A 142.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=12.92;SB=-5.811e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:175,18,0 chrIV 838649 . T C 1623 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.84;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1656,189,0 chrIV 839020 . T C 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.445;QD=18.97;ReadPosRankSum=1.584;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1361,156,0 chrIV 839045 . A T 1267 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=17.85;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1300,144,0 chrIV 839339 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=14.78;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1053,114,0 chrIV 839342 . A G 1025 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=14.44;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1058,120,0 chrIV 839657 . T G 2081 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0678;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.38;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2114,243,0 chrIV 839672 . A T 1726 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.01;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1759,192,0 chrIV 840230 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:977,108,0 chrIV 840362 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.9589;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.12;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:84:758,84,0 chrIV 840549 . G C 1496 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=22.00;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1529,174,0 chrIV 840598 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.23;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1947,219,0 chrIV 840697 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1640,186,0 chrIV 842028 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.63;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1207,138,0 chrIV 842057 . G C 1117 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.73;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1150,132,0 chrIV 842068 . T A 1230 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.09;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1263,138,0 chrIV 842070 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.96;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,144,0 chrIV 842326 . A G 911 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.87;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:944,111,0 chrIV 842336 . A G 830 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=14.56;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:863,99,0 chrIV 842343 . C G 817 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=14.85;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:96:850,96,0 chrIV 842380 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=15.84;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1015,114,0 chrIV 842450 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.33;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1062,120,0 chrIV 842455 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=15.45;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1037,117,0 chrIV 842465 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;MQRankSum=0.240;QD=15.02;ReadPosRankSum=1.679;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1009,114,0 chrIV 842576 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.13;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1953,213,0 chrIV 842711 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.84;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1333,147,0 chrIV 842876 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=0.857;QD=20.72;ReadPosRankSum=1.696;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2001,222,0 chrIV 842903 . A G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=3.057;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.014;QD=19.22;ReadPosRankSum=2.392;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1667,192,0 chrIV 842916 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.72;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1451,156,0 chrIV 843002 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=3.433;HaplotypeScore=12.8657;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.554;QD=18.48;ReadPosRankSum=1.696;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1844,213,0 chrIV 843125 . G T 1568 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.91;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1601,177,0 chrIV 843581 . T C 620 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=9.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:78:653,78,0 chrIV 843608 . A G 619 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=10.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:78:652,78,0 chrIV 843633 . C T 403 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=16.12;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:436,48,0 chrIV 843647 . T C 259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-1.369;QD=13.63;ReadPosRankSum=1.552;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:33:292,33,0 chrIV 843818 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=19.87;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1066,123,0 chrIV 843831 . G T 1070 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=18.14;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1103,126,0 chrIV 843835 . T C 993 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.55;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1026,123,0 chrIV 843857 . C A 1102 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=15.31;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1135,132,0 chrIV 844178 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.78;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1841,198,0 chrIV 844368 . C G 1628 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4135;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.32;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1661,189,0 chrIV 844646 . A T 1846 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.43;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1879,207,0 chrIV 844694 . G C 1727 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.18;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1760,204,0 chrIV 845065 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.67;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2069,225,0 chrIV 845136 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.06;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1096,120,0 chrIV 845309 . T A 1459 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.24;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1492,168,0 chrIV 845391 . G C 1803 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1836,204,0 chrIV 845567 . T C 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.577;QD=17.65;ReadPosRankSum=1.393;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:951,108,0 chrIV 845568 . T C 904 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.08;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:937,105,0 chrIV 845613 . G T 1100 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=16.92;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1133,129,0 chrIV 845818 . T G 1612 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1099;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.08;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1645,186,0 chrIV 845959 . A C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=72;Dels=0.00;FS=15.880;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.902;QD=20.64;ReadPosRankSum=2.903;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1519,174,0 chrIV 846137 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.29;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1384,156,0 chrIV 846477 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1426,156,0 chrIV 846867 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.28;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1132,129,0 chrIV 846900 . T G 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.227;QD=20.00;ReadPosRankSum=1.660;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1013,117,0 chrIV 846996 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.82;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1463,162,0 chrIV 847005 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.83;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1533,165,0 chrIV 847053 . A G 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.392;QD=17.00;ReadPosRankSum=1.619;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1070,123,0 chrIV 847395 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=76;Dels=0.00;FS=7.059;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=0.114;QD=17.38;ReadPosRankSum=2.385;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1354,153,0 chrIV 847524 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.87;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1230,141,0 chrIV 847527 . T G 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=7.568;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=1.164;QD=16.65;ReadPosRankSum=2.381;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1215,138,0 chrIV 847680 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1937,219,0 chrIV 847796 . T A 1232 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.67;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1265,141,0 chrIV 848136 . T C 900 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:933,108,0 chrIV 848940 . C A 2297 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.93;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2330,255,0 chrIV 848977 . C G 1596 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.20;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1629,186,0 chrIV 849204 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.37;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1602,183,0 chrIV 849395 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=17.02;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:850,93,0 chrIV 849478 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.63;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1323,147,0 chrIV 849555 . C T 705 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=11.2432;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=15.00;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:47:84:738,84,0 chrIV 849621 . C T 576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.772;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.9000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.271;QD=11.76;ReadPosRankSum=1.689;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:47:609,47,0 chrIV 849735 . A G 901 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.98;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:934,105,0 chrIV 849796 . T C 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.189;QD=18.88;ReadPosRankSum=1.664;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:94:996,94,0 chrIV 850164 . A G 837 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.41;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:870,99,0 chrIV 850484 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.24;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1168,126,0 chrIV 850495 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.13;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:958,111,0 chrIV 850508 . A T 824 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.16;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:857,93,0 chrIV 850697 . T C 2306 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.96;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2339,267,0 chrIV 850955 . G A 656 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=14.91;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:689,78,0 chrIV 851004 . T C 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=8.373;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.913;QD=15.60;ReadPosRankSum=1.669;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:891,102,0 chrIV 851043 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.07;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:955,108,0 chrIV 851114 . T A 82.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=21.4454;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=0.824;QD=2.23;ReadPosRankSum=-2.757;SB=-4.534e+01 GT:AD:DP:GQ:PL 0/1:19,17:37:8:112,0,8 chrIV 851220 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=9.542;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.027;QD=21.69;ReadPosRankSum=1.668;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1204,138,0 chrIV 851221 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.36;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1112,126,0 chrIV 851341 . T C 454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.413;QD=20.64;ReadPosRankSum=1.569;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,20:22:54:487,54,0 chrIV 851363 . C T 670 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:703,78,0 chrIV 851427 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.71;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1145,126,0 chrIV 851587 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.88;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1484,168,0 chrIV 851792 . A G 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=19.31;ReadPosRankSum=1.669;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1095,126,0 chrIV 852118 . G C 1568 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.10;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1601,180,0 chrIV 852128 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.83;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1401,159,0 chrIV 852463 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.09;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2100,237,0 chrIV 852474 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.42;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2154,234,0 chrIV 852504 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=-0.428;QD=19.19;ReadPosRankSum=1.695;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1818,207,0 chrIV 852619 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=87;Dels=0.00;FS=3.547;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.571;QD=18.75;ReadPosRankSum=1.692;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1664,186,0 chrIV 852749 . A G 1942 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.82;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1975,228,0 chrIV 852794 . C T 2182 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.98;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2215,249,0 chrIV 853082 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.94;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1688,189,0 chrIV 853091 . T C 1510 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.61;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1543,174,0 chrIV 853192 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.43;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1968,219,0 chrIV 853430 . T A 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-0.208;QD=18.78;ReadPosRankSum=1.594;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:972,105,0 chrIV 853448 . A C 958 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.96;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:991,111,0 chrIV 853759 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.764;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.504;QD=22.80;ReadPosRankSum=2.381;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1652,186,0 chrIV 853808 . C G 1439 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.98;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1472,165,0 chrIV 853958 . A G 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.336;QD=17.45;ReadPosRankSum=1.629;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1202,141,0 chrIV 854335 . C T 707 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.61;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:740,81,0 chrIV 854360 . T C 560 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.00;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:593,66,0 chrIV 854367 . C T 576 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=15.57;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:609,66,0 chrIV 854684 . A G 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=57;Dels=0.00;FS=9.243;HaplotypeScore=4.3474;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.323;QD=20.49;ReadPosRankSum=2.320;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1201,138,0 chrIV 854759 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.23;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1826,195,0 chrIV 854921 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1270,150,0 chrIV 855154 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.9006;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.00;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:83:99:1693,192,0 chrIV 855322 . G C 1104 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1137,129,0 chrIV 855587 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.05;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1577,186,0 chrIV 855709 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0589;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.48;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1712,189,0 chrIV 856201 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.63;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2173,246,0 chrIV 856278 . A T 2061 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2094,231,0 chrIV 856415 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.68;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1746,198,0 chrIV 856679 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.45;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1608,180,0 chrIV 856772 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.48;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1610,174,0 chrIV 857198 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.95;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1489,168,0 chrIV 857450 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.279;QD=22.35;ReadPosRankSum=1.621;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1419,162,0 chrIV 857609 . C A 2207 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.9632;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.75;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2240,249,0 chrIV 857627 . A C 2170 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.28;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2203,249,0 chrIV 858356 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.07;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2266,246,0 chrIV 858361 . T C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=3.222;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.841;QD=20.45;ReadPosRankSum=1.666;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2201,249,0 chrIV 858862 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.81;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1361,153,0 chrIV 859191 . T G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=90;Dels=0.00;FS=2.592;HaplotypeScore=12.2233;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.355;QD=18.72;ReadPosRankSum=2.395;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1718,198,0 chrIV 859506 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.84;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1565,171,0 chrIV 859510 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.48;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1615,186,0 chrIV 859708 . G A 3024 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.8353;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.16;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,147:150:99:3057,336,0 chrIV 859980 . A G 2098 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.93;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2131,249,0 chrIV 860035 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.2827;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=16.08;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1995,219,0 chrIV 860287 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.80;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2080,240,0 chrIV 860602 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.75;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1921,219,0 chrIV 860701 . T C 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.260;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=0.779;QD=19.16;ReadPosRankSum=1.689;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1566,174,0 chrIV 860755 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.46;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1657,186,0 chrIV 860764 . T C 1595 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.34;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1628,189,0 chrIV 860779 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.48;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1678,183,0 chrIV 861257 . A G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=62;Dels=0.00;FS=6.006;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.391;QD=17.42;ReadPosRankSum=2.849;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:3,58:62:99:1113,123,0 chrIV 861707 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=54.5843;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.24;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1119,123,0 chrIV 862580 . T G 1356 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.23;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1389,159,0 chrIV 862602 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.186;QD=18.41;ReadPosRankSum=1.670;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1064,120,0 chrIV 862622 . A G 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=54;Dels=0.00;FS=5.975;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.133;QD=14.31;ReadPosRankSum=2.530;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:93:806,93,0 chrIV 862854 . T C 882 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.64;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:915,105,0 chrIV 863028 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.05;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1393,150,0 chrIV 863455 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.09;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1615,180,0 chrIV 863664 . T C 1134 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.55;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1167,132,0 chrIV 863685 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.13;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1353,147,0 chrIV 863843 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.40;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2209,237,0 chrIV 864225 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.35;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2170,237,0 chrIV 864459 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.11;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1572,174,0 chrIV 864550 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.72;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1456,168,0 chrIV 864669 . G T 1194 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=16.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1227,138,0 chrIV 864686 . A G 1009 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-0.801;QD=15.06;ReadPosRankSum=1.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1042,120,0 chrIV 864727 . A G 393 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=9.36;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:51:426,51,0 chrIV 864978 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=3.40;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrIV 865057 . C T 523 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.38;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:60:556,60,0 chrIV 865291 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.04;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1300,144,0 chrIV 865324 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.41;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1531,168,0 chrIV 865399 . A G 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=3.038;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.618;QD=19.09;ReadPosRankSum=2.359;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1064,120,0 chrIV 865489 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=17.81;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1155,132,0 chrIV 865525 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.47;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1357,156,0 chrIV 865546 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.022;QD=17.29;ReadPosRankSum=1.688;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1382,156,0 chrIV 865573 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.55;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1208,138,0 chrIV 865855 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.07;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2266,252,0 chrIV 866008 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.42;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2381,264,0 chrIV 866041 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=3.757;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.365;QD=20.61;ReadPosRankSum=1.702;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2403,273,0 chrIV 866146 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.71;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2421,276,0 chrIV 866195 . T G 2016 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.4014;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.02;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2049,228,0 chrIV 866436 . T C 2788 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.12;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2821,324,0 chrIV 866998 . T C 2635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.0411;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.173;QD=21.96;ReadPosRankSum=1.646;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2668,303,0 chrIV 867546 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.9378;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.39;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2222,255,0 chrIV 867754 . G A 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.943;QD=17.89;ReadPosRankSum=0.285;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1446,136,0 chrIV 868136 . C G 1359 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=13.87;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:98:99:1392,159,0 chrIV 868348 . G T 1996 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.37;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2029,228,0 chrIV 868578 . G A 2864 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.60;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2897,324,0 chrIV 869149 . G T 1075 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=12.95;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1108,123,0 chrIV 869151 . C A 1023 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=12.63;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1056,120,0 chrIV 869159 . C T 948 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=11.15;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:981,108,0 chrIV 869369 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2181,237,0 chrIV 869984 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.03;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1972,216,0 chrIV 870200 . G C 1606 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.62;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1639,186,0 chrIV 870699 . A T 1579 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.63;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1612,177,0 chrIV 870727 . A C 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.02;FS=8.963;HaplotypeScore=5.5037;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.302;QD=19.87;ReadPosRankSum=1.677;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1305,150,0 chrIV 870749 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.93;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1327,153,0 chrIV 870917 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=2.919;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.805;QD=18.57;ReadPosRankSum=2.379;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1314,147,0 chrIV 871373 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.22;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1152,126,0 chrIV 871483 . G T 709 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:81:742,81,0 chrIV 871540 . C T 671 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:78:704,78,0 chrIV 871554 . G C 607 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.35;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:69:640,69,0 chrIV 871614 . G A 131.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=21.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:164,18,0 chrIV 871619 . A G 40.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=6.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:73,9,0 chrIV 871635 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=4.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:48,6,0 chrIV 871688 . C T 471 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:504,54,0 chrIV 871796 . C T 210.01 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=21.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:27:243,27,0 chrIV 871806 . G A 108.13 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:18:141,18,0 chrIV 871816 . G A 69.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:102,12,0 chrIV 877864 . G A 573 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.862;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=-2.411;QD=9.10;ReadPosRankSum=-0.608;SB=-1.200e-02 GT:AD:DP:GQ:PL 1/1:2,61:63:32:606,32,0 chrIV 877914 . C T 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.241;DP=157;Dels=0.00;FS=200.322;HaplotypeScore=14.1756;MLEAC=1;MLEAF=0.500;MQ=28.57;MQ0=6;MQRankSum=2.183;QD=1.30;ReadPosRankSum=-3.774;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,28:157:99:234,0,1336 chrIV 877937 . T C 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;DP=153;Dels=0.00;FS=191.758;HaplotypeScore=2.9032;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=7;MQRankSum=4.280;QD=2.63;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,40:153:99:432,0,1106 chrIV 878048 . A T 1718 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=1;QD=21.75;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1751,192,0 chrIV 878186 . A T 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;MQRankSum=1.490;QD=23.89;ReadPosRankSum=2.401;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2446,267,0 chrIV 878246 . C A 783 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=18.21;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:90:816,90,0 chrIV 878261 . C T 689 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=22.23;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:722,78,0 chrIV 878287 . A T 429 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.18;MQ0=0;QD=14.30;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:54:462,54,0 chrIV 884223 . G C 77.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.90;MQ0=0;MQRankSum=1.453;QD=7.72;ReadPosRankSum=2.450;SB=-2.170e-01 GT:AD:DP:GQ:PL 0/1:5,5:10:10:107,0,10 chrIV 884225 . C T 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=0;MQRankSum=0.825;QD=7.09;ReadPosRankSum=-1.031;SB=-5.836e-03 GT:AD:DP:GQ:PL 0/1:6,5:11:35:108,0,35 chrIV 884226 . C T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=0;MQRankSum=1.532;QD=7.46;ReadPosRankSum=-1.749;SB=-6.874e-03 GT:AD:DP:GQ:PL 0/1:6,5:11:31:112,0,31 chrIV 884268 . G C 123.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=12.31;SB=-2.612e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:156,18,0 chrIV 884320 . C T 331 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=18.39;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:364,39,0 chrIV 884517 . G A 235 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=11.19;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:268,30,0 chrIV 884597 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=3.48;SB=-2.739e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:12:102,12,0 chrIV 884761 . T A 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.402;QD=22.42;ReadPosRankSum=2.327;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1827,204,0 chrIV 885407 . G A 2668 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.23;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2701,291,0 chrIV 885734 . C T 2872 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2905,321,0 chrIV 885908 . A G 3510.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.5263;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.14;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3510,408,0 chrIV 886047 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.01;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2124,237,0 chrIV 886178 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.71;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2095,237,0 chrIV 886202 . A G 1961 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.22;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1994,228,0 chrIV 886289 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=114;Dels=0.00;FS=3.641;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.203;QD=19.75;ReadPosRankSum=1.670;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2285,255,0 chrIV 886990 . A T 235.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.611;DP=33;Dels=0.00;FS=74.361;HaplotypeScore=12.2004;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.318;QD=7.12;ReadPosRankSum=3.836;SB=-2.606e+00 GT:AD:DP:GQ:PL 0/1:21,12:33:27:265,0,27 chrIV 887023 . T A 587 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.46;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:66:620,66,0 chrIV 887044 . A G 724 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9920;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:90:757,90,0 chrIV 887417 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.95;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1332,150,0 chrIV 887504 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.01;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1614,183,0 chrIV 887555 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.92;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1937,216,0 chrIV 888086 . G T 2588 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.91;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2621,297,0 chrIV 888150 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.79;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2341,264,0 chrIV 888227 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4539;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.57;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2187,246,0 chrIV 888233 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.33;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1905,210,0 chrIV 888293 . T C 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.354;QD=16.47;ReadPosRankSum=-0.771;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1993,228,0 chrIV 888452 . T G 1949 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.39;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1982,231,0 chrIV 888461 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=16.59;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1675,192,0 chrIV 888488 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.71;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1604,174,0 chrIV 888611 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.21;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1306,150,0 chrIV 888734 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.18;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1069,114,0 chrIV 888770 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.73;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1087,120,0 chrIV 888818 . A G 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.501;QD=15.10;ReadPosRankSum=1.675;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:939,108,0 chrIV 889122 . T C 605 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:72:638,72,0 chrIV 889358 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=64.4439;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.98;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1835,198,0 chrIV 889568 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.24;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1498,171,0 chrIV 889739 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.4518;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.62;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1868,207,0 chrIV 890069 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=14.64;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:96:882,96,0 chrIV 890071 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=13.60;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:808,93,0 chrIV 890096 . A T 669 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=10.97;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:75:702,75,0 chrIV 890129 . A G 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=65;Dels=0.00;FS=5.707;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.829;QD=12.95;ReadPosRankSum=2.892;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:875,99,0 chrIV 890458 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.24;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1766,192,0 chrIV 890461 . C G 1389 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.94;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1422,168,0 chrIV 890830 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.5621;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.67;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2617,294,0 chrIV 891184 . G A 2371 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.36;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2404,264,0 chrIV 892057 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.60;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1738,195,0 chrIV 892662 . G C 386 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-6.640e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:419,48,0 chrIV 892764 . C T 1064 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1097,126,0 chrIV 892801 . A G 1708 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1741,192,0 chrIV 893039 . A G 1114 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.28;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1147,132,0 chrIV 893390 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.83;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1345,153,0 chrIV 893441 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=15.73;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1087,126,0 chrIV 893442 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.9164;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.65;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1066,117,0 chrIV 893751 . C G 844 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.35;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:877,102,0 chrIV 893934 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=17.02;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1701,195,0 chrIV 893952 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.234;QD=18.74;ReadPosRankSum=1.701;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2113,240,0 chrIV 893982 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.29;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1899,216,0 chrIV 894696 . T A 839 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=17.85;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:872,96,0 chrIV 894799 . A G 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:901,102,0 chrIV 895397 . A G 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.239;QD=17.50;ReadPosRankSum=1.673;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1083,120,0 chrIV 895418 . T C 1202 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.68;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1235,144,0 chrIV 895472 . A G 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.853;QD=19.97;ReadPosRankSum=1.681;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1371,156,0 chrIV 895550 . T A 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;MQRankSum=-1.462;QD=20.30;ReadPosRankSum=1.678;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1332,147,0 chrIV 895556 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.994;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.589;QD=18.85;ReadPosRankSum=2.374;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1258,144,0 chrIV 895577 . A T 1298 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=19.67;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1331,147,0 chrIV 895607 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.13;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1112,132,0 chrIV 895712 . G T 1545 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9377;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.16;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1578,174,0 chrIV 895814 . T G 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.01;FS=3.310;HaplotypeScore=9.2547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.531;QD=18.92;ReadPosRankSum=1.686;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1471,171,0 chrIV 895887 . A G 894 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.274;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9596;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=-1.307;QD=15.68;ReadPosRankSum=1.489;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:927,105,0 chrIV 895888 . A G 860 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.417;DP=56;Dels=0.00;FS=3.090;HaplotypeScore=3.9596;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-1.543;QD=15.36;ReadPosRankSum=1.606;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:893,102,0 chrIV 895889 . C T 913 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9807;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=16.91;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:946,102,0 chrIV 895890 . C T 884 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=16.68;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:917,102,0 chrIV 896024 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.94;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1468,168,0 chrIV 896117 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1256,144,0 chrIV 896319 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.17;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1642,174,0 chrIV 896774 . T G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=3.013;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.565;QD=20.19;ReadPosRankSum=2.392;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1749,198,0 chrIV 897251 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=96;Dels=0.00;FS=9.301;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.376;QD=19.29;ReadPosRankSum=3.291;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1885,207,0 chrIV 897260 . A G 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=95;Dels=0.00;FS=6.356;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.490;QD=18.76;ReadPosRankSum=2.291;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,91:95:99:1815,207,0 chrIV 897287 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.84;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1955,207,0 chrIV 897434 . A T 1817 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.75;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1850,213,0 chrIV 897884 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.45;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1730,195,0 chrIV 897959 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1188,138,0 chrIV 898087 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.11;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:983,114,0 chrIV 898406 . T G 914 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.44;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:947,108,0 chrIV 898456 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.17;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1208,135,0 chrIV 898531 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.16;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1966,213,0 chrIV 898763 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.00;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1249,144,0 chrIV 898787 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.97;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1750,198,0 chrIV 898970 . C T 3646.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.1390;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.99;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3646,396,0 chrIV 899035 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.90;SB=-1.622e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3001,336,0 chrIV 899072 . A G 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.979;DP=122;Dels=0.00;FS=16.779;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.007;QD=19.33;ReadPosRankSum=3.385;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:4,117:122:99:2391,273,0 chrIV 899129 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.94;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2029,216,0 chrIV 899304 . G A 2882 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.34;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,147:149:99:2915,312,0 chrIV 900294 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.97;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,135,0 chrIV 900339 . T C 1692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.347;QD=20.63;ReadPosRankSum=1.689;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1725,195,0 chrIV 900361 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.47;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1981,222,0 chrIV 900493 . C A 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.511;DP=107;Dels=0.00;FS=3.052;HaplotypeScore=14.9735;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.511;QD=20.23;ReadPosRankSum=1.600;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2198,252,0 chrIV 900563 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.2186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1818,198,0 chrIV 901107 . T A 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=85;Dels=0.00;FS=3.057;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-2.102;QD=22.92;ReadPosRankSum=2.334;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1981,210,0 chrIV 901288 . C G 1243 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.03;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1276,147,0 chrIV 901599 . T G 1464 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.52;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1497,165,0 chrIV 901798 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.63;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1355,156,0 chrIV 902051 . G T 901 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.77;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:934,102,0 chrIV 902065 . A C 867 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.4396;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.27;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:900,102,0 chrIV 902156 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1734,195,0 chrIV 902200 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.996;QD=22.26;ReadPosRankSum=1.602;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1814,207,0 chrIV 902257 . G A 2316 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.44;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2349,261,0 chrIV 902350 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.08;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1256,135,0 chrIV 902361 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.98;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:925,105,0 chrIV 902688 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.08;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1483,168,0 chrIV 902710 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.05;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1477,159,0 chrIV 902746 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.54;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1264,144,0 chrIV 903067 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.55;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1606,180,0 chrIV 903406 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.8357;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.70;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1386,159,0 chrIV 903517 . T C 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.983;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.027;QD=19.71;ReadPosRankSum=1.677;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1275,144,0 chrIV 903611 . C G 1578 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1611,183,0 chrIV 903976 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.46;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1168,135,0 chrIV 904531 . C A 1560 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1593,180,0 chrIV 904648 . A T 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=5.384;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.821;QD=24.22;ReadPosRankSum=1.687;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1898,210,0 chrIV 904826 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.14;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1745,198,0 chrIV 904871 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.22;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1812,201,0 chrIV 904915 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.23;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1591,174,0 chrIV 905063 . A G 1040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.029;QD=17.63;ReadPosRankSum=1.674;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1073,123,0 chrIV 905128 . A T 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.596;QD=22.18;ReadPosRankSum=1.619;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1386,150,0 chrIV 905609 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.31;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1141,129,0 chrIV 905619 . C T 928 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.62;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:961,102,0 chrIV 906063 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1516,171,0 chrIV 906101 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.620;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.150;QD=18.80;ReadPosRankSum=-1.005;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1556,163,0 chrIV 906310 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.34;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1445,165,0 chrIV 907003 . A C 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.400;QD=19.31;ReadPosRankSum=1.695;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1848,210,0 chrIV 907098 . A T 1991 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.64;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2024,219,0 chrIV 907102 . G A 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.245;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.638;QD=20.00;ReadPosRankSum=-0.711;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1933,210,0 chrIV 907227 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.21;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1878,216,0 chrIV 907286 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.60;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2487,282,0 chrIV 907514 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.52;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1757,192,0 chrIV 907611 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=14.88;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1432,159,0 chrIV 907616 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=15.71;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1478,162,0 chrIV 907779 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=14.92;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1212,138,0 chrIV 907782 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.24;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1137,126,0 chrIV 907830 . T G 1080 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.42;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1113,123,0 chrIV 907845 . A T 1137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.77;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1170,129,0 chrIV 908478 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.611;QD=21.87;ReadPosRankSum=1.681;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1520,174,0 chrIV 908567 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.67;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1508,165,0 chrIV 908590 . A G 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.814;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.850;QD=16.55;ReadPosRankSum=2.383;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1258,138,0 chrIV 908594 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.10;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1336,147,0 chrIV 908649 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.83;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1299,147,0 chrIV 908658 . T G 1446 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.30;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1479,165,0 chrIV 908760 . A G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=3.037;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.167;QD=21.13;ReadPosRankSum=2.070;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1132,129,0 chrIV 908781 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.71;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1441,156,0 chrIV 908872 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.91;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1568,177,0 chrIV 908967 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.24;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1634,180,0 chrIV 909447 . T A 1089 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.29;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1122,123,0 chrIV 909656 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.334;QD=16.86;ReadPosRankSum=1.672;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:994,114,0 chrIV 909908 . C A 1662 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1695,183,0 chrIV 910688 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1505,174,0 chrIV 910905 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.84;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1429,153,0 chrIV 910921 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.29;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1277,144,0 chrIV 910968 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.87;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1786,201,0 chrIV 911274 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=19.32;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1772,201,0 chrIV 911326 . G A 1363 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=13.77;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1396,153,0 chrIV 911330 . T C 1285 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=12.24;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1318,150,0 chrIV 911333 . G A 1164 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=10.88;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1197,132,0 chrIV 911343 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=10.81;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1082,120,0 chrIV 911472 . A C 1388 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.03;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1421,162,0 chrIV 911858 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.47;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:995,108,0 chrIV 911925 . G T 1070 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.45;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1103,123,0 chrIV 911981 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.22;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1307,150,0 chrIV 912021 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.13;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1421,159,0 chrIV 912072 . T G 766 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:799,90,0 chrIV 912148 . G A 441 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.75;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:474,51,0 chrIV 912471 . A C 1463 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.86;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1496,171,0 chrIV 912557 . T C 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.524;QD=18.80;ReadPosRankSum=1.652;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:99:860,99,0 chrIV 912700 . A C 2184 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.41;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2217,252,0 chrIV 912778 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=15.27;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1514,177,0 chrIV 912782 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=15.96;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1581,183,0 chrIV 912835 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.36;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1522,171,0 chrIV 912884 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.85;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1541,174,0 chrIV 912902 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7280;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.51;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1399,150,0 chrIV 912983 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.97;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1778,198,0 chrIV 913027 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3868;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=16.80;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2267,258,0 chrIV 913034 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.73;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2225,261,0 chrIV 913112 . T G 2699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;DP=128;Dels=0.00;FS=3.114;HaplotypeScore=8.7323;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.705;QD=21.09;ReadPosRankSum=0.941;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2732,288,0 chrIV 913596 . T G 1431 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.87;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1464,165,0 chrIV 913613 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.29;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1352,147,0 chrIV 913736 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=17.23;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1067,120,0 chrIV 913753 . T C 1115 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.28;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1148,129,0 chrIV 913863 . T C 665 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=16.22;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:698,81,0 chrIV 913906 . G C 381 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.05;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:48:414,48,0 chrIV 913924 . T C 323 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.00;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,15:17:39:356,39,0 chrIV 913936 . G T 263 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.79;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:296,33,0 chrIV 913973 . G C 126.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.77;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:159,18,0 chrIV 914065 . C T 131.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=8.20;SB=-1.418e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:164,18,0 chrIV 914096 . T C 200.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=12.50;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:233,27,0 chrIV 914121 . A G 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.714;QD=18.53;ReadPosRankSum=1.531;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:39:348,39,0 chrIV 914455 . C G 678 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.19;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:81:711,81,0 chrIV 914816 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.41;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2067,237,0 chrIV 914870 . G T 1917 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.55;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1950,213,0 chrIV 914902 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.19;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1559,183,0 chrIV 915378 . A T 712 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.26;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:745,84,0 chrIV 915388 . T A 632 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.80;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:72:665,72,0 chrIV 915411 . A G 655 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=14.24;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:688,81,0 chrIV 915430 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=13.68;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:813,93,0 chrIV 915507 . A C 1185 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.94;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1218,138,0 chrIV 915625 . G T 1033 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.96;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1066,117,0 chrIV 916142 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:709,75,0 chrIV 917034 . T C 692 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.74;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:725,84,0 chrIV 917149 . G A 927 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:960,105,0 chrIV 917311 . A G 776 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:93:809,93,0 chrIV 917540 . C T 614 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.8491;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=17.54;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:647,75,0 chrIV 917577 . A G 618 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.18;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:651,75,0 chrIV 917833 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.47;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1046,120,0 chrIV 917909 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.68;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1507,165,0 chrIV 918363 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1508,174,0 chrIV 918400 . T A 1696 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.47;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1729,183,0 chrIV 918495 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.82;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1379,159,0 chrIV 918501 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=12.86;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1242,141,0 chrIV 918524 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=15.24;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1374,153,0 chrIV 918606 . G T 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9309;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.693;QD=20.11;ReadPosRankSum=-0.087;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1662,183,0 chrIV 918797 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.25;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1223,138,0 chrIV 918920 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.75;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1691,183,0 chrIV 919133 . A C 661 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.66;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:694,81,0 chrIV 919416 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.1090;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.993;QD=20.23;ReadPosRankSum=2.318;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1166,132,0 chrIV 920241 . A G 2209 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.31;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2242,255,0 chrIV 920392 . T A 1785 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.88;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1818,201,0 chrIV 920565 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1962,216,0 chrIV 920628 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2277,249,0 chrIV 920955 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=108;Dels=0.00;FS=3.051;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.279;QD=20.47;ReadPosRankSum=1.700;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2244,258,0 chrIV 921045 . G A 1808 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.55;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1841,201,0 chrIV 921068 . A C 1915 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.76;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1948,228,0 chrIV 921130 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.20;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2376,258,0 chrIV 921442 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-2.044;QD=17.20;ReadPosRankSum=2.396;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1598,183,0 chrIV 921790 . A T 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.025;QD=16.68;ReadPosRankSum=2.302;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,48:50:93:867,93,0 chrIV 922174 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1066,117,0 chrIV 922223 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1813,204,0 chrIV 922382 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.56;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2361,270,0 chrIV 922571 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1860,213,0 chrIV 922757 . A G 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.276;QD=19.24;ReadPosRankSum=1.582;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1380,162,0 chrIV 922835 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.96;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1614,180,0 chrIV 922979 . T G 1441 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=21.51;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1474,168,0 chrIV 923081 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=1;QD=16.31;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:93:816,93,0 chrIV 923102 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.93;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1188,129,0 chrIV 923384 . G T 1761 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.29;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1794,198,0 chrIV 923675 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.80;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1739,198,0 chrIV 923832 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.55;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1705,189,0 chrIV 923952 . T C 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=70;Dels=0.00;FS=5.980;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.864;QD=18.31;ReadPosRankSum=2.865;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:3,64:70:99:1315,153,0 chrIV 924009 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.44;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1534,165,0 chrIV 924083 . T A 1089 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.46;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1122,120,0 chrIV 924094 . A G 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=60;Dels=0.00;FS=12.058;HaplotypeScore=13.7735;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.052;QD=16.32;ReadPosRankSum=2.881;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:3,56:60:99:1012,117,0 chrIV 924299 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.37;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2172,240,0 chrIV 924311 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2435;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.15;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1929,219,0 chrIV 924342 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.30;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1745,201,0 chrIV 924351 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=15.97;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1869,210,0 chrIV 924464 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.176;QD=23.37;ReadPosRankSum=1.689;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1949,216,0 chrIV 924561 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.09;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1408,153,0 chrIV 924619 . G T 2301 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.54;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2334,252,0 chrIV 924667 . T C 2796 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.30;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2829,324,0 chrIV 924698 . G A 3121 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4327;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.12;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3154,342,0 chrIV 925130 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.60;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2670,291,0 chrIV 925318 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.42;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1728,195,0 chrIV 925618 . G C 1377 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1410,162,0 chrIV 925675 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.21;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1569,174,0 chrIV 925805 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=16.08;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1737,201,0 chrIV 925876 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.17;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1561,177,0 chrIV 925956 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.70;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1585,168,0 chrIV 926246 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.52;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1453,168,0 chrIV 926285 . C G 1309 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.11;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1342,153,0 chrIV 926551 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.00;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1420,156,0 chrIV 926695 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=16.52;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:991,114,0 chrIV 926719 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.15;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1220,138,0 chrIV 926760 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.80;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1241,141,0 chrIV 926842 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.77;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1272,147,0 chrIV 926918 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.60;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1388,159,0 chrIV 927158 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.02;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1060,114,0 chrIV 927608 . C A 1007 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4832;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.73;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1040,114,0 chrIV 927826 . A T 2065 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.8049;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.25;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2098,228,0 chrIV 928114 . A T 2577 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.67;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2610,297,0 chrIV 928480 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.199;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.268;QD=17.80;ReadPosRankSum=1.586;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1297,150,0 chrIV 928579 . C G 256.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;DP=93;Dels=0.00;FS=161.821;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=57.68;MQ0=0;MQRankSum=-1.265;QD=2.75;ReadPosRankSum=-6.352;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:65,27:93:99:286,0,733 chrIV 928640 . C A 2267 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=18.7733;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.58;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2300,252,0 chrIV 928753 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.04;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1530,177,0 chrIV 928756 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.68;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1589,177,0 chrIV 928988 . T C 1136 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1169,129,0 chrIV 929658 . A T 1243 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.12;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1276,141,0 chrIV 929665 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.36;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1214,138,0 chrIV 930059 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.21;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1032,123,0 chrIV 930409 . A G 663 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:696,78,0 chrIV 930989 . C G 748 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=10.2759;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=13.85;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:93:781,93,0 chrIV 931013 . G C 1480 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.41;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1513,177,0 chrIV 931147 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.77;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1900,216,0 chrIV 931376 . C A 2111 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.30;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2144,231,0 chrIV 931988 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.06;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1718,192,0 chrIV 932509 . A G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.866;QD=19.43;ReadPosRankSum=1.696;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1937,216,0 chrIV 932859 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.20;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1411,156,0 chrIV 933397 . A G 865 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.38;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:898,99,0 chrIV 933755 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.306;QD=20.00;ReadPosRankSum=1.579;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1413,159,0 chrIV 933821 . A G 1225 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.08;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1258,144,0 chrIV 933861 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.687;QD=19.35;ReadPosRankSum=1.677;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1252,144,0 chrIV 933867 . C A 1231 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.85;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1264,138,0 chrIV 933896 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.878;QD=19.34;ReadPosRankSum=1.685;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1445,165,0 chrIV 934007 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.84;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1304,147,0 chrIV 934175 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.9867;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.97;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1270,141,0 chrIV 934184 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.42;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1198,135,0 chrIV 934358 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.24;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1380,159,0 chrIV 934364 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.19;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1306,150,0 chrIV 934508 . A G 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=46;Dels=0.00;FS=3.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.144;QD=20.11;ReadPosRankSum=2.336;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:2,41:46:99:958,111,0 chrIV 934835 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.91;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1041,117,0 chrIV 934903 . T C 870 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=15.26;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:903,102,0 chrIV 934907 . T C 866 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=15.19;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:899,102,0 chrIV 934913 . G A 908 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=15.66;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:941,102,0 chrIV 935011 . G A 725 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.48;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:758,87,0 chrIV 935012 . A G 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=4.228;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.269;QD=15.87;ReadPosRankSum=1.578;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:87:747,87,0 chrIV 935079 . G C 701 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.52;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:734,84,0 chrIV 935099 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.21;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:966,108,0 chrIV 935138 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.02;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:936,99,0 chrIV 935163 . A G 1138 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.47;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1171,132,0 chrIV 935317 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.44;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1157,126,0 chrIV 935335 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.93;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1169,132,0 chrIV 935504 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.48;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2775,315,0 chrIV 935575 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.68;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1942,222,0 chrIV 935988 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.96;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1891,219,0 chrIV 936158 . C A 1875 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.38;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1908,213,0 chrIV 936221 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.463;QD=20.11;ReadPosRankSum=2.370;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1903,216,0 chrIV 936290 . A T 1091 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.14;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1124,126,0 chrIV 936485 . T A 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.059;QD=19.10;ReadPosRankSum=1.684;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1408,153,0 chrIV 936486 . G C 1285 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.60;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1318,150,0 chrIV 936728 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.47;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1159,135,0 chrIV 937139 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.796;QD=21.25;ReadPosRankSum=1.701;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2392,270,0 chrIV 937167 . C T 2835 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.50;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2868,315,0 chrIV 937517 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.20;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1708,198,0 chrIV 937752 . G C 1967 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.35;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2000,225,0 chrIV 937875 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.19;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:3005,342,0 chrIV 938009 . A T 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=105;Dels=0.00;FS=3.651;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.068;QD=20.35;ReadPosRankSum=1.698;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2170,237,0 chrIV 938147 . A G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=7.305;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.080;QD=20.78;ReadPosRankSum=2.357;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2236,258,0 chrIV 938591 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.68;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1922,222,0 chrIV 939227 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.90;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2186,243,0 chrIV 939749 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.26;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1958,228,0 chrIV 940069 . A G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.223;QD=17.27;ReadPosRankSum=1.698;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1777,204,0 chrIV 940499 . G C 2110 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=20.89;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2143,246,0 chrIV 940972 . G C 1750 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.8832;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.86;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1783,210,0 chrIV 940995 . T A 1669 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.2080;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=16.86;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1702,195,0 chrIV 941063 . T C 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.328;QD=22.06;ReadPosRankSum=1.670;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2504,285,0 chrIV 941099 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.85;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2327,252,0 chrIV 941151 . T C 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=5.086;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.143;QD=17.08;ReadPosRankSum=1.628;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1758,198,0 chrIV 941913 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3140;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.16;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1252,135,0 chrIV 942017 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.144;QD=20.26;ReadPosRankSum=1.636;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1492,174,0 chrIV 942067 . T G 1097 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=17.69;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1130,129,0 chrIV 942069 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.71;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1193,129,0 chrIV 942657 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.13;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2127,237,0 chrIV 942662 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.51;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1921,219,0 chrIV 942690 . A G 1695 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.63;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1728,189,0 chrIV 942718 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=15.35;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1461,156,0 chrIV 942743 . G T 1285 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=14.44;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1318,144,0 chrIV 942748 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=14.76;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1347,147,0 chrIV 942812 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.45;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2120,231,0 chrIV 942881 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.10;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1535,177,0 chrIV 942914 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.05;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1957,222,0 chrIV 943103 . G C 1554 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.53;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1587,183,0 chrIV 943132 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=16.79;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1628,183,0 chrIV 943208 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.87;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1564,168,0 chrIV 943539 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.00;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1093,126,0 chrIV 943601 . A T 1029 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.42;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1062,120,0 chrIV 943622 . T C 901 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=4.616;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-1.732;QD=16.38;ReadPosRankSum=1.669;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:934,108,0 chrIV 943625 . C T 936 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=17.33;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:969,105,0 chrIV 943632 . G T 958 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.425;QD=18.08;ReadPosRankSum=1.536;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:991,105,0 chrIV 944052 . A G 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=109;Dels=0.00;FS=3.481;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.505;QD=19.66;ReadPosRankSum=1.667;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2176,246,0 chrIV 944213 . A G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.118;QD=16.66;ReadPosRankSum=1.644;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1366,153,0 chrIV 944216 . G C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3999;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.190;QD=16.23;ReadPosRankSum=1.565;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1380,156,0 chrIV 944344 . G C 1782 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.18;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1815,210,0 chrIV 944433 . G C 1291 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.68;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1324,150,0 chrIV 944564 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.98;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1187,129,0 chrIV 944691 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1394,162,0 chrIV 944820 . C G 1687 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.74;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1720,192,0 chrIV 945227 . A T 1493 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.91;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1526,165,0 chrIV 945419 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.34;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1356,153,0 chrIV 945604 . T G 1325 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.20;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1358,156,0 chrIV 945712 . A G 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.056;DP=73;Dels=0.00;FS=4.772;HaplotypeScore=6.4048;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.534;QD=17.16;ReadPosRankSum=4.318;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:7,66:73:99:1286,147,0 chrIV 945892 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=23.67;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1335,147,0 chrIV 946294 . C G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=5.70;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrIV 946295 . A C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrIV 946425 . T C 954 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=19.47;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:987,111,0 chrIV 946452 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.40;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1045,117,0 chrIV 946727 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.935;QD=17.95;ReadPosRankSum=1.663;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1846,210,0 chrIV 946728 . T A 1838 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.76;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1871,210,0 chrIV 946858 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.18;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2142,234,0 chrIV 947412 . A G 2492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=119;Dels=0.00;FS=15.727;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-2.530;QD=20.94;ReadPosRankSum=2.855;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:3,115:119:99:2525,291,0 chrIV 947805 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.60;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1895,216,0 chrIV 947829 . G T 1656 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.70;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1689,183,0 chrIV 947968 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1440,156,0 chrIV 947998 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.19;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1542,174,0 chrIV 948494 . A C 1656 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.26;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1689,192,0 chrIV 948548 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2178,246,0 chrIV 948761 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.81;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1136,129,0 chrIV 948920 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.06;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1939,210,0 chrIV 948979 . C A 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.6420;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.579;QD=17.21;ReadPosRankSum=1.325;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1238,121,0 chrIV 949385 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.70;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1885,213,0 chrIV 949450 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.82;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1689,192,0 chrIV 949454 . A T 1615 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.35;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1648,186,0 chrIV 949502 . A T 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.022;QD=18.47;ReadPosRankSum=1.687;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1455,159,0 chrIV 949789 . T C 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.375;QD=22.34;ReadPosRankSum=1.696;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2245,252,0 chrIV 949927 . A G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.791;QD=21.58;ReadPosRankSum=1.647;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1781,207,0 chrIV 949961 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.425;QD=22.78;ReadPosRankSum=1.688;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1833,204,0 chrIV 950111 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.93;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2345,267,0 chrIV 950119 . G T 2541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.197;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.189;QD=21.35;ReadPosRankSum=1.441;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2574,273,0 chrIV 950307 . G C 1410 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.31;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1443,165,0 chrIV 950368 . A G 1158 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.54;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1191,135,0 chrIV 950411 . A G 1508 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=17.14;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1541,171,0 chrIV 950634 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.65;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1505,171,0 chrIV 950769 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3578;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.98;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2530,288,0 chrIV 950851 . T G 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.585;QD=22.22;ReadPosRankSum=1.673;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2677,300,0 chrIV 950947 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=88;Dels=0.00;FS=6.380;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.005;QD=19.27;ReadPosRankSum=2.308;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1729,195,0 chrIV 951132 . T A 2709 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.63;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2742,291,0 chrIV 951669 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.27;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2242,243,0 chrIV 951711 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.80;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1884,216,0 chrIV 951858 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9232;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.09;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1826,210,0 chrIV 952026 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9025;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.82;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1772,201,0 chrIV 952063 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.929;QD=21.48;ReadPosRankSum=1.690;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1794,207,0 chrIV 952329 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.01;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1714,198,0 chrIV 952427 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.59;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1524,165,0 chrIV 952622 . T G 1187 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.46;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1220,141,0 chrIV 952667 . A G 857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=47;Dels=0.00;FS=2.809;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.081;QD=18.23;ReadPosRankSum=2.343;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:2,44:47:99:890,102,0 chrIV 952698 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.38;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:726,81,0 chrIV 952701 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.68;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:736,81,0 chrIV 952937 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=25.21;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2075,228,0 chrIV 953162 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,112:116:99:2669,285,0 chrIV 953270 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.01;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1734,192,0 chrIV 953287 . C G 1680 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=15.85;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1713,192,0 chrIV 953294 . T A 1744 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=15.85;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1777,195,0 chrIV 953613 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=22.20;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2142,231,0 chrIV 953693 . T C 2409 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.90;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2442,279,0 chrIV 954024 . T A 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=89;Dels=0.04;FS=3.057;HaplotypeScore=15.6279;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-1.203;QD=15.57;ReadPosRankSum=2.334;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1419,162,0 chrIV 954027 . A T 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=93;Dels=0.00;FS=15.399;HaplotypeScore=15.6279;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=-0.602;QD=15.27;ReadPosRankSum=3.917;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:6,87:93:99:1453,140,0 chrIV 954146 . T A 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.1988;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.161;QD=21.90;ReadPosRankSum=1.661;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2223,243,0 chrIV 954283 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.319;QD=23.22;ReadPosRankSum=1.687;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1798,204,0 chrIV 954302 . A G 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=90;Dels=0.00;FS=3.317;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.276;QD=21.28;ReadPosRankSum=1.653;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1948,222,0 chrIV 954475 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=15.82;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1488,168,0 chrIV 954530 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2365;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.62;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1818,210,0 chrIV 954939 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.41;SB=-1.726e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2748,300,0 chrIV 954954 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.13;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2469,270,0 chrIV 954963 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.58;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2354,252,0 chrIV 954985 . A C 1906 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=15.01;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1939,225,0 chrIV 955099 . C A 2168 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.26;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2201,240,0 chrIV 955293 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2112;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.19;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1786,198,0 chrIV 955568 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=13.36;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1155,126,0 chrIV 955574 . T G 1016 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=11.42;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1049,123,0 chrIV 955620 . A C 1154 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=15.81;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1187,135,0 chrIV 955643 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=15.96;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1214,135,0 chrIV 955755 . T A 1242 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=24.84;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1275,138,0 chrIV 955831 . C T 393 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.09;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:426,48,0 chrIV 955955 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.36;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1502,171,0 chrIV 956094 . C A 1150 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.96;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1183,129,0 chrIV 956096 . T C 1171 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.42;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1204,135,0 chrIV 956399 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.20;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1684,189,0 chrIV 956402 . T G 1529 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.20;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1562,177,0 chrIV 956740 . G C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.072;DP=108;Dels=0.00;FS=3.310;HaplotypeScore=9.1755;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.567;QD=18.51;ReadPosRankSum=-0.016;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,104:108:99:2032,231,0 chrIV 956810 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.08;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1895,219,0 chrIV 956957 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.91;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2377,267,0 chrIV 957424 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.12;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1220,138,0 chrIV 957741 . T A 2198 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2231,240,0 chrIV 958319 . A C 1443 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.91;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1476,171,0 chrIV 958391 . A G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9674;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.074;QD=17.86;ReadPosRankSum=1.688;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1444,162,0 chrIV 958999 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.260;QD=21.67;ReadPosRankSum=2.395;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,88:93:99:2048,234,0 chrIV 959287 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.56;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1607,183,0 chrIV 959371 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.39;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2423,261,0 chrIV 959478 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.78;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2167,243,0 chrIV 959773 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.92;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1811,195,0 chrIV 960101 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1918,225,0 chrIV 961189 . A G 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=60;Dels=0.00;FS=2.962;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.679;QD=19.10;ReadPosRankSum=2.368;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1179,135,0 chrIV 961848 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.33;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1864,201,0 chrIV 962119 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.000;QD=23.61;ReadPosRankSum=1.694;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2229,249,0 chrIV 962263 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.66;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1891,213,0 chrIV 962389 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.52;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2293,249,0 chrIV 962545 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1680,183,0 chrIV 963291 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=15.49;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:823,93,0 chrIV 963747 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.37;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2066,222,0 chrIV 963777 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=103;Dels=0.00;FS=2.815;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.881;QD=22.64;ReadPosRankSum=2.401;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2365,261,0 chrIV 965755 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1608,174,0 chrIV 965951 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.42;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2096,231,0 chrIV 966228 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=22.81;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1379,156,0 chrIV 966497 . C T 442 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=13.00;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:51:475,51,0 chrIV 966504 . C T 355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.666;DP=59;Dels=0.00;FS=5.342;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;MQRankSum=0.305;QD=6.02;ReadPosRankSum=6.496;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:32,26:59:42:388,42,0 chrIV 966514 . T C 72.51 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=2.01;SB=-4.485e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:12:105,12,0 chrIV 966524 . A T 80.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=2.24;ReadPosRankSum=1.636;SB=-3.845e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:113,12,0 chrIV 966525 . A T 78.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.059;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=2.18;ReadPosRankSum=1.636;SB=-3.935e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:111,12,0 chrIV 966526 . A T 81.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=2.26;ReadPosRankSum=1.636;SB=-3.925e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:114,12,0 chrIV 966527 . A C 74.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=2.07;ReadPosRankSum=1.636;SB=-3.835e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:107,12,0 chrIV 966528 . A T 81.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=2.26;ReadPosRankSum=1.636;SB=-4.015e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:114,12,0 chrIV 966529 . A T 69.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=36;Dels=0.00;FS=3.259;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;MQRankSum=1.636;QD=1.93;ReadPosRankSum=1.636;SB=-4.165e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:12:102,12,0 chrIV 966614 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=21.70;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1812,195,0 chrIV 966626 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.72;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1749,204,0 chrIV 966662 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.62;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1741,189,0 chrIV 966686 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.87;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1202,129,0 chrIV 966952 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0091;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.03;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2107,237,0 chrIV 966953 . C G 2100 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0091;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.26;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2133,237,0 chrIV 966980 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.81;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1974,228,0 chrIV 967004 . A T 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=98;Dels=0.00;FS=13.451;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=-0.009;QD=15.30;ReadPosRankSum=3.331;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1532,174,0 chrIV 967019 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=14.32;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1393,153,0 chrIV 967037 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=13.59;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1052,123,0 chrIV 967787 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.74;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1045,120,0 chrIV 967934 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1251,135,0 chrIV 968052 . A C 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.936;DP=106;Dels=0.00;FS=33.892;HaplotypeScore=91.2518;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=0;MQRankSum=2.217;QD=1.92;ReadPosRankSum=-5.858;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:80,25:106:99:234,0,1032 chrIV 968331 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.99;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1565,168,0 chrIV 968466 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.55;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2339,261,0 chrIV 969561 . C T 654 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:687,75,0 chrIV 969643 . T G 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.156;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.675;QD=15.19;ReadPosRankSum=1.674;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:929,105,0 chrIV 970293 . G A 863 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.36;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:896,105,0 chrIV 970434 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.42;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2185,246,0 chrIV 970494 . G T 2611 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.76;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2644,297,0 chrIV 970658 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.41;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1708,186,0 chrIV 970880 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.60;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1582,180,0 chrIV 971073 . T C 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.326;QD=20.31;ReadPosRankSum=1.682;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1455,165,0 chrIV 971172 . C T 926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.660;QD=19.29;ReadPosRankSum=0.289;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:959,108,0 chrIV 971579 . C A 681 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.02;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:714,78,0 chrIV 971728 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.60;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1653,180,0 chrIV 971787 . A T 2306 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.80;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2339,255,0 chrIV 971873 . T C 732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.933;QD=18.77;ReadPosRankSum=1.644;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:87:765,87,0 chrIV 971904 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:704,78,0 chrIV 972096 . A G 2339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.631;DP=112;Dels=0.00;FS=12.358;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.739;QD=20.88;ReadPosRankSum=2.937;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2372,273,0 chrIV 972240 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5398;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.59;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1698,198,0 chrIV 972465 . T C 2306 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.05;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2339,267,0 chrIV 972540 . A G 2132 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.04;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2165,249,0 chrIV 972726 . G T 1562 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.52;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1595,180,0 chrIV 973196 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.26;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1479,162,0 chrIV 973794 . G T 1922 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.36;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1955,216,0 chrIV 974630 . A G 1039 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.76;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1072,123,0 chrIV 974632 . T C 1010 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=16.56;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1043,120,0 chrIV 974689 . T A 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=5.119;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.187;QD=14.69;ReadPosRankSum=1.253;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:988,114,0 chrIV 974731 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.56;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1534,171,0 chrIV 974990 . T A 1962 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.17;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1995,228,0 chrIV 975090 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=88;Dels=0.00;FS=3.014;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.099;QD=19.20;ReadPosRankSum=2.365;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1723,198,0 chrIV 975108 . A G 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=95;Dels=0.00;FS=2.766;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.763;QD=17.39;ReadPosRankSum=2.262;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,90:95:99:1685,189,0 chrIV 975126 . G T 1644 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.47;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1677,180,0 chrIV 975252 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.34;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2468,279,0 chrIV 975354 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.04;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1350,147,0 chrIV 975573 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.987;QD=21.97;ReadPosRankSum=1.695;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2076,228,0 chrIV 975612 . C A 1552 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.16;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1585,171,0 chrIV 975623 . T C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=5.066;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.653;QD=20.77;ReadPosRankSum=1.675;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1300,147,0 chrIV 975702 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.28;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1303,141,0 chrIV 976174 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=9.7989;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.58;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1062,117,0 chrIV 976264 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.93;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1042,120,0 chrIV 977181 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.81;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1968,213,0 chrIV 977306 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.64;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1787,201,0 chrIV 977428 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.32;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1963,219,0 chrIV 977485 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.37;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1979,225,0 chrIV 977509 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.74;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1956,225,0 chrIV 977767 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.19;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1735,195,0 chrIV 977945 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.30;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,98:106:99:2185,240,0 chrIV 978043 . A G 1561 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.81;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1594,186,0 chrIV 978274 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.82;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1690,186,0 chrIV 978384 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.92;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1520,165,0 chrIV 978570 . A G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.274;QD=18.59;ReadPosRankSum=1.681;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1297,147,0 chrIV 978598 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.30;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1192,135,0 chrIV 978636 . G A 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.039;QD=18.59;ReadPosRankSum=-1.287;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1353,147,0 chrIV 978778 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1214,132,0 chrIV 978959 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.16;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1011,117,0 chrIV 979492 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=0.302;QD=20.90;ReadPosRankSum=1.677;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1350,156,0 chrIV 979529 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=20.73;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1256,144,0 chrIV 979539 . G T 1125 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=19.40;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1158,132,0 chrIV 979584 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=13.47;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1043,120,0 chrIV 979614 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.156;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.275;QD=19.35;ReadPosRankSum=1.694;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1794,207,0 chrIV 979668 . T G 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.638;QD=22.50;ReadPosRankSum=1.701;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2531,288,0 chrIV 979786 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.1960;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.87;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1786,192,0 chrIV 979805 . T G 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;MQRankSum=-0.370;QD=17.34;ReadPosRankSum=1.576;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1576,180,0 chrIV 979813 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=16.16;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1407,159,0 chrIV 979873 . G A 653 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=8.16;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:78:686,78,0 chrIV 979879 . G A 726 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=8.75;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:84:759,84,0 chrIV 979891 . T G 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;MQRankSum=-1.738;QD=9.86;ReadPosRankSum=1.957;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:920,108,0 chrIV 979901 . T C 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=111;Dels=0.00;FS=7.502;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;MQRankSum=-1.031;QD=10.05;ReadPosRankSum=3.704;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:5,106:111:99:1148,135,0 chrIV 979931 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.838;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=1.018;QD=16.14;ReadPosRankSum=1.706;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2164,249,0 chrIV 979973 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.6811;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.17;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2816,312,0 chrIV 979983 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=11.225;HaplotypeScore=5.6769;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.627;QD=18.23;ReadPosRankSum=2.951;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,140:144:99:2658,303,0 chrIV 980016 . A T 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=1.241;QD=16.42;ReadPosRankSum=1.703;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2003,222,0 chrIV 980072 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=15.96;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1853,201,0 chrIV 980090 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=1.338;QD=17.54;ReadPosRankSum=1.704;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2190,249,0 chrIV 980269 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.61;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2548,282,0 chrIV 980295 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.28;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2055,231,0 chrIV 980341 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.53;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1874,213,0 chrIV 980364 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.0407;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.27;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1988,216,0 chrIV 980428 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.11;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2001,225,0 chrIV 980461 . T G 1558 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.77;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1591,180,0 chrIV 980521 . T A 1878 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.56;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1911,210,0 chrIV 980605 . C A 1355 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=20.53;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1388,153,0 chrIV 980614 . T G 1176 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=18.97;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1209,141,0 chrIV 980617 . C G 1252 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=21.96;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1285,150,0 chrIV 980652 . A C 1345 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=18.94;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1378,162,0 chrIV 980706 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=19.73;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1710,189,0 chrIV 980779 . G C 1610 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=19.40;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1643,189,0 chrIV 980816 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=20.53;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1470,171,0 chrIV 980844 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=18.91;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1035,129,0 chrIV 980857 . C T 835 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=19.42;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:868,108,0 chrIV 980873 . T G 900 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=18.37;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:933,114,0 chrIV 980906 . T C 578 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=15.62;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:75:611,75,0 chrIV 980919 . A G 447 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.96;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:57:480,57,0 chrIV 980934 . A G 502 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=15.69;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:63:535,63,0 chrIV 980935 . A G 426 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=13.31;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:54:459,54,0 chrIV 981066 . A T 517 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=12.31;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:63:550,63,0 chrIV 981067 . G A 565 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=13.45;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:66:598,66,0 chrIV 981071 . T C 507 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.555;DP=39;Dels=0.00;FS=12.900;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=1.466;QD=13.00;ReadPosRankSum=1.555;SB=-1.901e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:63:540,63,0 chrIV 981074 . G T 503 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=13.24;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:60:536,60,0 chrIV 981075 . A T 432 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.547;DP=38;Dels=0.00;FS=15.798;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.365;QD=11.37;ReadPosRankSum=1.641;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:54:465,54,0 chrIV 981087 . T C 426 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=10.39;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:54:459,54,0 chrIV 981096 . G C 462 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=10.74;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:57:495,57,0 chrIV 981112 . C T 462 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=9.83;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:60:495,60,0 chrIV 981139 . C T 371 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=9.76;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:51:404,51,0 chrIV 981146 . T C 376 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=10.44;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:51:409,51,0 chrIV 981149 . G A 364 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=10.11;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:48:397,48,0 chrIV 981159 . C T 367 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=11.84;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:48:400,48,0 chrIV 981160 . C T 348 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=0;QD=11.23;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:48:381,48,0 chrIV 992797 . G C 1280 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.33;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1313,153,0 chrIV 992912 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=17.82;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:817,90,0 chrIV 993026 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.741;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;MQRankSum=-0.952;QD=0.25;ReadPosRankSum=1.488;SB=-6.798e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:6:49,6,0 chrIV 993060 . T A 1207 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=15.88;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1240,135,0 chrIV 993078 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=8.101;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;MQRankSum=-1.217;QD=16.00;ReadPosRankSum=2.387;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1297,144,0 chrIV 993106 . T C 1492 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.76;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1525,171,0 chrIV 993128 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.243;DP=78;Dels=0.00;FS=3.019;HaplotypeScore=9.3107;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.730;QD=17.58;ReadPosRankSum=2.125;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:3,74:78:99:1404,159,0 chrIV 993190 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=16.45;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1579,180,0 chrIV 993297 . T C 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=63;Dels=0.00;FS=5.582;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.295;QD=20.22;ReadPosRankSum=2.887;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:3,59:63:99:1307,150,0 chrIV 993303 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.08;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1361,156,0 chrIV 993336 . A T 1315 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.79;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1348,147,0 chrIV 993362 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.25;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1457,162,0 chrIV 993715 . T C 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.188;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-0.624;QD=21.05;ReadPosRankSum=1.686;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1612,189,0 chrIV 993775 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.29;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2262,258,0 chrIV 993979 . C T 578 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=35.6877;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=14.10;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:66:611,66,0 chrIV 993993 . A G 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=37.0030;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;MQRankSum=0.217;QD=10.19;ReadPosRankSum=1.660;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:60:522,60,0 chrIV 994023 . A G 572 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=10.59;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:605,69,0 chrIV 994124 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.11;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1657,192,0 chrIV 994230 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=68;Dels=0.00;FS=2.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.676;QD=18.76;ReadPosRankSum=2.376;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1309,150,0 chrIV 994341 . C A 729 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=17.78;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:762,84,0 chrIV 994347 . C T 675 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=16.46;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:708,78,0 chrIV 994414 . A G 456 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=10.13;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:57:489,57,0 chrIV 994415 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=10.90;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:556,60,0 chrIV 994605 . A T 1734 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.89;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1767,195,0 chrIV 994719 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.92;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1611,174,0 chrIV 995637 . T C 825 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.7886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:858,99,0 chrIV 995820 . G A 221 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=23.9035;MLEAC=2;MLEAF=1.00;MQ=38.78;MQ0=0;QD=6.31;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:30:254,30,0 chrIV 995831 . T C 304 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=8.22;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:39:337,39,0 chrIV 995837 . T C 325 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=7.56;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:42:358,42,0 chrIV 995898 . C T 892 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.9494;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=15.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:925,102,0 chrIV 996015 . A G 826 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.88;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:52:99:859,99,0 chrIV 996022 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.46;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:868,105,0 chrIV 996542 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.70;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1604,177,0 chrIV 996692 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.48;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1837,201,0 chrIV 996740 . T G 1008 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.00;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1041,117,0 chrIV 997121 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.31;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1684,189,0 chrIV 997472 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.52;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1570,180,0 chrIV 997511 . T A 1399 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.99;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1432,159,0 chrIV 997571 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.43;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1576,174,0 chrIV 998004 . G T 2882 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2915,324,0 chrIV 998350 . G T 1773 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.02;FS=0.000;HaplotypeScore=14.6940;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=14.41;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1806,198,0 chrIV 998484 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9133;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.19;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2237,255,0 chrIV 998627 . A T 710 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.082;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=-1.075;QD=12.24;ReadPosRankSum=1.673;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:81:743,81,0 chrIV 998628 . A T 684 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=12.21;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:717,78,0 chrIV 998630 . T C 650 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=11.61;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:683,78,0 chrIV 998631 . T A 663 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;MQRankSum=-1.713;QD=11.63;ReadPosRankSum=2.364;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:78:696,78,0 chrIV 998635 . A G 711 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=11.29;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:84:744,84,0 chrIV 998658 . A G 680 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=10.46;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:81:713,81,0 chrIV 998676 . T C 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-0.517;QD=11.99;ReadPosRankSum=1.687;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:956,111,0 chrIV 998712 . A C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=4.427;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.804;QD=15.99;ReadPosRankSum=-0.839;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1600,180,0 chrIV 998725 . C G 1741 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.07;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1774,201,0 chrIV 998786 . G A 2817 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.67;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2850,306,0 chrIV 998825 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=17.1127;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.98;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:3066,336,0 chrIV 999271 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.58;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2050,234,0 chrIV 999384 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.82;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2272,243,0 chrIV 999505 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.18;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1643,192,0 chrIV 999562 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.10;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1581,174,0 chrIV 999724 . C T 953 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.85;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:986,105,0 chrIV 999930 . T C 853 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.54;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:886,96,0 chrIV 1000343 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.95;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1814,198,0 chrIV 1000380 . G A 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8767;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.485;QD=23.95;ReadPosRankSum=-1.524;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2476,253,0 chrIV 1001837 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1403,159,0 chrIV 1001983 . T C 1225 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.71;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1258,144,0 chrIV 1002060 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.94;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1236,138,0 chrIV 1002119 . C A 994 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.75;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1027,117,0 chrIV 1002467 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.32;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1169,132,0 chrIV 1002837 . A G 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=122;Dels=0.00;FS=11.779;HaplotypeScore=4.6149;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.595;QD=18.84;ReadPosRankSum=2.860;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2332,273,0 chrIV 1003263 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=15.98;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1503,174,0 chrIV 1003272 . A G 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.830;QD=15.56;ReadPosRankSum=1.660;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1527,174,0 chrIV 1003376 . A C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.466;DP=131;Dels=0.00;FS=4.891;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.354;QD=16.06;ReadPosRankSum=3.742;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:5,126:131:99:2137,240,0 chrIV 1003380 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=15.76;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2034,234,0 chrIV 1003479 . C T 2784 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.78;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2817,312,0 chrIV 1003693 . C A 1535 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.32;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1568,171,0 chrIV 1003809 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.09;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1781,198,0 chrIV 1003812 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=87;Dels=0.00;FS=7.394;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.158;QD=19.76;ReadPosRankSum=2.335;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1752,198,0 chrIV 1003824 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.10;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1809,204,0 chrIV 1003934 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1397,156,0 chrIV 1004069 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.61;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1697,189,0 chrIV 1004126 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.062;QD=21.60;ReadPosRankSum=1.676;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1372,153,0 chrIV 1004480 . T A 1334 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.87;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1367,147,0 chrIV 1004969 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.43;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1790,198,0 chrIV 1005047 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.78;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2015,225,0 chrIV 1005151 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.77;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1796,201,0 chrIV 1005358 . C G 1979 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.03;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2012,228,0 chrIV 1005453 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.82;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1896,219,0 chrIV 1005614 . A G 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.321;QD=20.54;ReadPosRankSum=1.700;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2251,261,0 chrIV 1005656 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.49;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2141,243,0 chrIV 1005728 . T C 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.493;QD=22.35;ReadPosRankSum=1.682;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:3095,351,0 chrIV 1005839 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.69;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1942,222,0 chrIV 1006075 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3437;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.59;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1827,195,0 chrIV 1006085 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=15.42;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1652,186,0 chrIV 1006304 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.43;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1850,210,0 chrIV 1006340 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=24.08;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1935,210,0 chrIV 1006502 . T G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.346;QD=19.13;ReadPosRankSum=1.659;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1850,219,0 chrIV 1006510 . G C 1816 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.53;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1849,210,0 chrIV 1006661 . A C 1652 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.40;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1685,192,0 chrIV 1006673 . A G 1305 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.40;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1338,150,0 chrIV 1006679 . C A 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.124;QD=17.39;ReadPosRankSum=1.077;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1337,144,0 chrIV 1006961 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.172;QD=17.60;ReadPosRankSum=1.427;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1230,141,0 chrIV 1007012 . T G 902 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.04;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:935,108,0 chrIV 1007192 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.70;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1201,135,0 chrIV 1007414 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.13;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1490,162,0 chrIV 1007597 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.02;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2128,228,0 chrIV 1007834 . G T 1778 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.51;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1811,201,0 chrIV 1008485 . A G 642 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=13.10;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:78:675,78,0 chrIV 1008697 . G A 425 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.50;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:51:458,51,0 chrIV 1008843 . G A 1747 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=25.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1780,198,0 chrIV 1008848 . C T 1674 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=23.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1707,186,0 chrIV 1008896 . C T 678 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:81:711,81,0 chrIV 1009126 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=20.46;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1629,180,0 chrIV 1009135 . A T 1657 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=21.24;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1690,189,0 chrIV 1009143 . C A 1689 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.11;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1722,189,0 chrIV 1009163 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.79;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1480,168,0 chrIV 1009315 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8442;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.19;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1986,225,0 chrIV 1009558 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.94;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1771,192,0 chrIV 1009761 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.04;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1715,183,0 chrIV 1009914 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.64;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1487,165,0 chrIV 1009977 . A G 576 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.00;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:609,69,0 chrIV 1010028 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.42;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:72:660,72,0 chrIV 1010069 . A T 723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.408;QD=21.26;ReadPosRankSum=1.631;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:84:756,84,0 chrIV 1010115 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=16.60;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:863,96,0 chrIV 1010124 . T C 780 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=15.92;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:813,93,0 chrIV 1010256 . T C 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.173;QD=19.10;ReadPosRankSum=1.676;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1236,141,0 chrIV 1010478 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.23;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:967,111,0 chrIV 1010563 . A T 1037 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.94;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1070,117,0 chrIV 1010565 . T C 924 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=17.77;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:957,108,0 chrIV 1010594 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.64;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:815,90,0 chrIV 1010668 . T G 1384 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.29;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1417,162,0 chrIV 1010750 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.38;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1331,150,0 chrIV 1010799 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.24;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1323,147,0 chrIV 1010878 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=6.58;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:902,99,0 chrIV 1010886 . G A 400.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.012;DP=129;Dels=0.00;FS=7.174;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=0;MQRankSum=-1.484;QD=3.10;ReadPosRankSum=-4.399;SB=-4.810e+02 GT:AD:DP:GQ:PL 0/1:66,62:129:99:430,0,227 chrIV 1010894 . G A 310.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.531;DP=134;Dels=0.00;FS=3.501;HaplotypeScore=10.3035;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-2.431;QD=2.31;ReadPosRankSum=-5.168;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:78,52:134:99:340,0,508 chrIV 1010896 . G A 295.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.057;DP=134;Dels=0.00;FS=4.660;HaplotypeScore=10.3035;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-1.769;QD=2.20;ReadPosRankSum=-5.253;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:82,52:134:99:325,0,532 chrIV 1010901 . A G 240.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.378;DP=143;Dels=0.00;FS=1.490;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=38.89;MQ0=0;MQRankSum=-4.512;QD=1.68;ReadPosRankSum=-6.967;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:91,51:143:99:270,0,774 chrIV 1010910 . T C 1011 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=11.89;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1044,120,0 chrIV 1011237 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=19.34;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2199,243,0 chrIV 1011299 . C G 2094 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.53;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2127,243,0 chrIV 1011319 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.17;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2068,222,0 chrIV 1011332 . C A 1791 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=15.71;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1824,198,0 chrIV 1011449 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=18.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1675,189,0 chrIV 1011655 . C A 2296 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.87;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2329,255,0 chrIV 1011753 . C G 2329 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.5694;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.37;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2362,270,0 chrIV 1011936 . A T 1124 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.56;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1157,129,0 chrIV 1011970 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.36;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1330,147,0 chrIV 1012073 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.6785;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=14.81;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1410,156,0 chrIV 1012671 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.57;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3300,360,0 chrIV 1013385 . T G 1238 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.34;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1271,147,0 chrIV 1013417 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.19;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1029,117,0 chrIV 1013503 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=20.43;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1116,132,0 chrIV 1013924 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=4.021;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.294;QD=17.80;ReadPosRankSum=1.667;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:994,114,0 chrIV 1014066 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.24;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1401,156,0 chrIV 1014713 . G T 906 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.09;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:939,105,0 chrIV 1014863 . C A 1255 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.61;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1288,153,0 chrIV 1014944 . T G 1476 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9042;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.50;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1509,171,0 chrIV 1015301 . G A 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.192;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.877;QD=22.39;ReadPosRankSum=0.922;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1757,192,0 chrIV 1015598 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.43;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1231,141,0 chrIV 1015740 . T G 754 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.39;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:787,90,0 chrIV 1015807 . A G 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.254;QD=17.51;ReadPosRankSum=1.640;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1346,150,0 chrIV 1015826 . T A 1427 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.99;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1460,162,0 chrIV 1015888 . T A 1428 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.55;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1461,156,0 chrIV 1015897 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.58;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1345,153,0 chrIV 1016050 . T C 795 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.56;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:828,96,0 chrIV 1016056 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.66;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:863,96,0 chrIV 1016282 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.00;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1193,135,0 chrIV 1016376 . G C 1333 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.50;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1366,150,0 chrIV 1016426 . C A 1471 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=19.61;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1504,165,0 chrIV 1016597 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.62;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1179,135,0 chrIV 1016685 . A G 783 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.40;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:816,93,0 chrIV 1016821 . A T 609 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=11.28;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:75:642,75,0 chrIV 1016858 . T A 1037 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.16;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1070,117,0 chrIV 1017015 . G T 793 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.24;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:826,90,0 chrIV 1017026 . T G 743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-1.339;QD=16.89;ReadPosRankSum=1.654;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:87:776,87,0 chrIV 1017181 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.51;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1279,141,0 chrIV 1017548 . T G 1664 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.61;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1697,192,0 chrIV 1017610 . A C 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=123;Dels=0.00;FS=10.283;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.850;QD=21.39;ReadPosRankSum=2.370;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2664,306,0 chrIV 1017759 . G T 2605 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.65;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2638,297,0 chrIV 1017855 . T A 2292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.666;QD=21.62;ReadPosRankSum=1.567;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2325,264,0 chrIV 1017915 . T C 3005 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.46;SB=-1.680e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3038,339,0 chrIV 1018014 . A T 3408.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.85;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3408,378,0 chrIV 1018111 . C G 2790 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.14;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2823,321,0 chrIV 1018236 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.76;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2483,288,0 chrIV 1018321 . C A 3091 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=19.0309;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.96;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3124,351,0 chrIV 1018564 . C A 1718 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.47;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1751,189,0 chrIV 1018753 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1387,156,0 chrIV 1018804 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1340,144,0 chrIV 1019082 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.98;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1334,150,0 chrIV 1019310 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1212,141,0 chrIV 1019506 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.10;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1337,150,0 chrIV 1019535 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.22;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1290,144,0 chrIV 1019958 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.77;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1666,192,0 chrIV 1020081 . A T 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.075;QD=19.47;ReadPosRankSum=1.682;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1396,150,0 chrIV 1020194 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.96;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1342,150,0 chrIV 1020315 . G C 1149 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.68;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1182,138,0 chrIV 1020456 . A T 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=54;Dels=0.00;FS=10.080;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.674;QD=20.67;ReadPosRankSum=2.868;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1149,129,0 chrIV 1020493 . C A 962 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.38;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:995,108,0 chrIV 1020625 . G A 1060 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.10;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1093,126,0 chrIV 1020636 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.08;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1159,132,0 chrIV 1022238 . G C 780 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.73;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:813,93,0 chrIV 1022417 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.59;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1721,198,0 chrIV 1022660 . T A 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=60;Dels=0.00;FS=5.547;HaplotypeScore=8.8528;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.611;QD=19.17;ReadPosRankSum=2.815;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1183,129,0 chrIV 1022874 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3071;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=21.64;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2262,264,0 chrIV 1022903 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=21.21;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1878,207,0 chrIV 1023018 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.115;QD=19.17;ReadPosRankSum=1.675;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1183,132,0 chrIV 1023058 . C A 1874 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=22.05;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1907,207,0 chrIV 1023476 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=1.98;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:49,6,0 chrIV 1023703 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=21.40;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1210,135,0 chrIV 1024243 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.250;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.875;QD=19.01;ReadPosRankSum=1.695;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1801,207,0 chrIV 1024375 . C A 2334 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.1764;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.65;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2367,255,0 chrIV 1024582 . A C 1922 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0211;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1955,219,0 chrIV 1024632 . G T 2145 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2178,240,0 chrIV 1024985 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.966;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.616;QD=18.99;ReadPosRankSum=2.349;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1894,219,0 chrIV 1025085 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.73;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1671,183,0 chrIV 1025323 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1226;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.71;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2259,258,0 chrIV 1025748 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1847,204,0 chrIV 1025949 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.85;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2546,282,0 chrIV 1026600 . T A 1800 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.68;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1833,198,0 chrIV 1026759 . A T 1523 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1556,171,0 chrIV 1026927 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.16;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2071,228,0 chrIV 1027140 . A T 1390 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2461;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.72;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1423,159,0 chrIV 1027623 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.17;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1414,165,0 chrIV 1027653 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.97;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1532,171,0 chrIV 1027767 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.52;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1474,165,0 chrIV 1028050 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.74;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2830,309,0 chrIV 1028400 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.96;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2268,258,0 chrIV 1028937 . A G 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3930;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.115;QD=20.36;ReadPosRankSum=1.694;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1886,213,0 chrIV 1029103 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.25;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1413,153,0 chrIV 1029540 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=20.09;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1520,162,0 chrIV 1030143 . T A 3303.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=7.575;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.270;QD=22.02;ReadPosRankSum=2.253;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:2,148:150:99:3303,369,0 chrIV 1030162 . G A 3409.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.91;SB=-1.907e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3409,372,0 chrIV 1030171 . A T 3386.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.646;QD=20.04;ReadPosRankSum=1.712;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:1,168:169:99:3386,369,0 chrIV 1030251 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.40;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1959,216,0 chrIV 1030401 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=96.5246;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.65;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2275,243,0 chrIV 1030607 . G C 2341 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.73;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2374,270,0 chrIV 1030683 . A G 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.726;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.502;QD=17.15;ReadPosRankSum=2.387;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1371,156,0 chrIV 1031009 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1831,198,0 chrIV 1031318 . T G 1299 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1332,153,0 chrIV 1031350 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=21.28;ReadPosRankSum=1.641;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1650,189,0 chrIV 1031473 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1994;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.22;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1985,216,0 chrIV 1031550 . T A 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.389;DP=101;Dels=0.00;FS=5.730;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.526;QD=20.33;ReadPosRankSum=1.629;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2086,209,0 chrIV 1031637 . A G 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.689;QD=21.05;ReadPosRankSum=1.565;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1780,204,0 chrIV 1031723 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1489,159,0 chrIV 1031832 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=10.8567;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.13;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1157,126,0 chrIV 1031929 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:977,105,0 chrIV 1032015 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.027;QD=22.32;ReadPosRankSum=2.387;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1774,201,0 chrIV 1032120 . C T 885 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.06;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:918,105,0 chrIV 1032507 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.04;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:863,96,0 chrIV 1033167 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=9.78;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:78:708,78,0 chrIV 1033176 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=10.55;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:90:835,90,0 chrIV 1033297 . A C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7599;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.579;QD=21.37;ReadPosRankSum=1.223;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1486,168,0 chrIV 1033434 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.81;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1800,204,0 chrIV 1033545 . A C 1628 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.42;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1661,192,0 chrIV 1033569 . G T 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.27;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1837,201,0 chrIV 1033590 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.74;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1692,192,0 chrIV 1033712 . A C 1597 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.88;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1630,186,0 chrIV 1033864 . A C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.559;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.823;QD=19.27;ReadPosRankSum=1.689;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1575,177,0 chrIV 1033891 . G C 1706 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.59;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1739,195,0 chrIV 1033951 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.13;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1449,165,0 chrIV 1034115 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.68;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:917,102,0 chrIV 1034116 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.51;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:926,105,0 chrIV 1034253 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.18;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1365,153,0 chrIV 1034355 . A G 1074 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.87;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1107,126,0 chrIV 1034463 . A G 776 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.82;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:809,90,0 chrIV 1034538 . T C 1266 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.46;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1299,150,0 chrIV 1034696 . C A 1064 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.28;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1097,123,0 chrIV 1034709 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.46;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1106,126,0 chrIV 1034859 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.531;QD=19.83;ReadPosRankSum=1.682;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1401,159,0 chrIV 1034904 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1554,171,0 chrIV 1035084 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.34;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1530,174,0 chrIV 1035309 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.01;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1374,156,0 chrIV 1035551 . T C 2358 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.50;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2391,273,0 chrIV 1035606 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=17.03;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1906,207,0 chrIV 1035620 . A C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698;DP=103;Dels=0.00;FS=3.896;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=1.665;QD=16.34;ReadPosRankSum=1.329;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1716,198,0 chrIV 1035627 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8172;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=14.85;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1459,165,0 chrIV 1035668 . T C 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=2.778;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=-0.817;QD=12.58;ReadPosRankSum=2.358;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:1379,150,0 chrIV 1035697 . A C 1253 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=13.33;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1286,144,0 chrIV 1035891 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.66;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1960,222,0 chrIV 1036063 . A C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=2.737;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.375;QD=20.75;ReadPosRankSum=2.362;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1195,138,0 chrIV 1036126 . C G 1547 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.42;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1580,177,0 chrIV 1036179 . A C 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.392;QD=22.69;ReadPosRankSum=1.675;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1417,162,0 chrIV 1036257 . G A 904 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.45;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:937,102,0 chrIV 1036312 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.22;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:944,105,0 chrIV 1036351 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.62;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:927,99,0 chrIV 1036384 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.05;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:87:783,87,0 chrIV 1036426 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.76;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:971,105,0 chrIV 1036780 . T C 1496 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.67;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1529,174,0 chrIV 1037061 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.60;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1705,186,0 chrIV 1037080 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.66;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1587,177,0 chrIV 1037098 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=13.99;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1348,150,0 chrIV 1037205 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=3.188;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.993;QD=20.15;ReadPosRankSum=1.686;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1544,177,0 chrIV 1037262 . A G 1138 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.06;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1171,132,0 chrIV 1037347 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.233;QD=21.14;ReadPosRankSum=1.681;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1513,171,0 chrIV 1037511 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.49;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2102,228,0 chrIV 1037542 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.29;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1433,162,0 chrIV 1037652 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.27;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1406,150,0 chrIV 1037710 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3250;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.25;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1633,174,0 chrIV 1037923 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.44;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1491,168,0 chrIV 1037986 . T A 831 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.79;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:864,96,0 chrIV 1037990 . C T 766 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.81;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:799,87,0 chrIV 1038058 . T C 946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=5.863;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.027;QD=17.20;ReadPosRankSum=1.604;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:979,108,0 chrIV 1038059 . T C 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=5.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.535;QD=16.76;ReadPosRankSum=1.669;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:955,108,0 chrIV 1038316 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=107;Dels=0.00;FS=26.397;HaplotypeScore=6.8498;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.028;QD=22.37;ReadPosRankSum=2.934;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2427,279,0 chrIV 1038433 . C A 1427 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.29;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1460,165,0 chrIV 1038463 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.52;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1982,222,0 chrIV 1038620 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=20.73;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2023,216,0 chrIV 1039132 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.83;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1602,180,0 chrIV 1039173 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.12;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1735,189,0 chrIV 1039385 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.325;QD=21.63;ReadPosRankSum=1.664;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1136,132,0 chrIV 1040424 . T G 1591 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.72;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1624,186,0 chrIV 1040438 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.81;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1613,183,0 chrIV 1040522 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.06;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1907,222,0 chrIV 1040595 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.57;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1699,195,0 chrIV 1040627 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4379;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.32;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1718,195,0 chrIV 1040643 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.34;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1698,186,0 chrIV 1040939 . A G 2997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.438;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.407;QD=23.41;ReadPosRankSum=1.705;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3030,342,0 chrIV 1041086 . T C 3193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.8183;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.074;QD=21.43;ReadPosRankSum=1.724;SB=-1.679e+03 GT:AD:DP:GQ:PL 1/1:2,147:149:99:3226,372,0 chrIV 1041278 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.50;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2268,246,0 chrIV 1041560 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.43;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2287,258,0 chrIV 1041581 . A T 2229 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.73;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2262,252,0 chrIV 1041853 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.00;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1705,192,0 chrIV 1041863 . T A 1728 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.33;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1761,201,0 chrIV 1042103 . T C 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.584;QD=21.27;ReadPosRankSum=2.350;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2139,246,0 chrIV 1042427 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.35;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2461,270,0 chrIV 1042469 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3021;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.35;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1926,219,0 chrIV 1042736 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9205;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.70;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1585,177,0 chrIV 1042968 . T C 900 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6752;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:933,108,0 chrIV 1043012 . T C 877 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.40;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:910,102,0 chrIV 1043069 . A G 948 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.96;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:981,114,0 chrIV 1043113 . G A 440 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.17;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,26:29:54:473,54,0 chrIV 1043299 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:971,105,0 chrIV 1043662 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.17;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1557,177,0 chrIV 1043887 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.30;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2632,291,0 chrIV 1043992 . T A 1592 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.18;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1625,174,0 chrIV 1044004 . T A 1550 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2952;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.62;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1583,171,0 chrIV 1044052 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=16.92;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1302,147,0 chrIV 1044506 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1278,147,0 chrIV 1044571 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1330,144,0 chrIV 1044635 . C A 1333 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1366,150,0 chrIV 1044751 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.82;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:993,108,0 chrIV 1044873 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.12;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1008,114,0 chrIV 1045062 . A T 747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.666;QD=19.15;ReadPosRankSum=1.644;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:84:780,84,0 chrIV 1045115 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.42;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:809,90,0 chrIV 1045140 . G A 586 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.76;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:619,66,0 chrIV 1045145 . T C 588 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.280;QD=18.97;ReadPosRankSum=1.621;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:69:621,69,0 chrIV 1045146 . T C 553 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.43;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:586,66,0 chrIV 1045288 . T C 1001 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.76;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1034,117,0 chrIV 1045311 . G C 990 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.06;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1023,123,0 chrIV 1045482 . C G 864 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.35;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:897,102,0 chrIV 1045644 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.02;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1244,141,0 chrIV 1045735 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.4344;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.28;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1479,171,0 chrIV 1045804 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.52;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1570,180,0 chrIV 1045807 . C G 1575 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.19;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1608,180,0 chrIV 1045825 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=20.92;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1581,177,0 chrIV 1045889 . A G 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.149;DP=58;Dels=0.00;FS=3.087;HaplotypeScore=8.8546;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.300;QD=18.67;ReadPosRankSum=2.237;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1116,126,0 chrIV 1046027 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1595,186,0 chrIV 1046207 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.92;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1886,216,0 chrIV 1046447 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.76;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1883,204,0 chrIV 1046579 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.00;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1713,192,0 chrIV 1046738 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.75;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1534,168,0 chrIV 1046913 . G C 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.01;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1672,192,0 chrIV 1046963 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.03;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1495,168,0 chrIV 1047046 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.27;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1592,171,0 chrIV 1047131 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.15;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1558,183,0 chrIV 1047443 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1302,150,0 chrIV 1047620 . C G 2397 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.7752;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.99;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2430,270,0 chrIV 1048271 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.28;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1623,177,0 chrIV 1048688 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.25;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2200,249,0 chrIV 1049123 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.29;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1287,144,0 chrIV 1049195 . T C 1165 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.64;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1198,138,0 chrIV 1050369 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9889;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.83;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2430,270,0 chrIV 1050403 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1579,180,0 chrIV 1050451 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.04;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1350,147,0 chrIV 1050824 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;MQRankSum=-1.009;QD=22.30;ReadPosRankSum=1.694;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2085,231,0 chrIV 1051023 . C T 997 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=12.46;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1030,111,0 chrIV 1051068 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.34;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1638,177,0 chrIV 1051230 . T C 2914 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4499;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.91;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2947,333,0 chrIV 1051307 . T C 2618 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.2430;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.64;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2651,300,0 chrIV 1051340 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.52;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1459,165,0 chrIV 1051341 . C A 1339 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.62;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1372,156,0 chrIV 1051356 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-0.484;QD=14.34;ReadPosRankSum=2.388;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1166,135,0 chrIV 1051452 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.064;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.107;QD=20.06;ReadPosRankSum=1.689;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1678,192,0 chrIV 1051506 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.52;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2219,252,0 chrIV 1052156 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1388,150,0 chrIV 1052196 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.77;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1272,144,0 chrIV 1052562 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1941,219,0 chrIV 1052869 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1025,111,0 chrIV 1052914 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1136,126,0 chrIV 1053286 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.61;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1723,186,0 chrIV 1053397 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.67;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1646,177,0 chrIV 1053489 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.29;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1692,186,0 chrIV 1053493 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.64;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1705,189,0 chrIV 1053592 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.48;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1689,192,0 chrIV 1053747 . A G 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=3.041;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.183;QD=19.45;ReadPosRankSum=2.317;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1492,165,0 chrIV 1053946 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.38;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1389,153,0 chrIV 1054527 . T G 1164 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.91;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1197,135,0 chrIV 1054662 . A C 994 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.75;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1027,117,0 chrIV 1054717 . T C 659 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.38;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:78:692,78,0 chrIV 1054762 . A T 83.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.923;QD=2.13;ReadPosRankSum=0.350;SB=-2.213e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:15:116,15,0 chrIV 1054827 . T G 629 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=14.30;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:662,75,0 chrIV 1055184 . G A 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.284;QD=0.55;ReadPosRankSum=-2.231;SB=-3.997e+01 GT:AD:DP:GQ:PL 1/1:72,3:75:9:73,9,0 chrIV 1055697 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=13.58;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1473,168,0 chrIV 1055826 . T G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=114;Dels=0.00;FS=15.651;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.089;QD=19.24;ReadPosRankSum=2.850;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2226,255,0 chrIV 1055893 . A G 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.7736;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;MQRankSum=-0.798;QD=16.82;ReadPosRankSum=1.708;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2405,276,0 chrIV 1056052 . A G 772 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.38;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:805,93,0 chrIV 1056448 . T C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.148;QD=20.37;ReadPosRankSum=1.699;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2172,246,0 chrIV 1057517 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.6563;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.05;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2201,240,0 chrIV 1057799 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.49;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:41:81:709,81,0 chrIV 1057818 . T A 608 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:69:641,69,0 chrIV 1058083 . A G 447 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.53;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:54:480,54,0 chrIV 1058864 . C T 1316 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.89;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1349,147,0 chrIV 1059154 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.72;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1119,126,0 chrIV 1059207 . T A 1050 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.87;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1083,117,0 chrIV 1059313 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.71;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1379,156,0 chrIV 1059380 . C A 1005 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.00;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1038,117,0 chrIV 1059396 . G T 1209 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.50;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1242,135,0 chrIV 1059445 . A T 1555 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.47;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1588,177,0 chrIV 1059534 . T A 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.278;QD=18.90;ReadPosRankSum=1.619;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1186,135,0 chrIV 1059598 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.52;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1677,189,0 chrIV 1059600 . T A 1769 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=23.91;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1802,192,0 chrIV 1059932 . A G 171.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.113;DP=102;Dels=0.00;FS=14.750;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-0.486;QD=1.68;ReadPosRankSum=-3.112;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:69,33:102:99:201,0,1184 chrIV 1060010 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.20;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1380,159,0 chrIV 1060151 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.4033;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.60;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1633,180,0 chrIV 1060244 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5917;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.89;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2093,225,0 chrIV 1060655 . C T 1249 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.82;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1282,144,0 chrIV 1060678 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.62;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1225,141,0 chrIV 1060691 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.45;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1377,150,0 chrIV 1061436 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2146,231,0 chrIV 1061501 . C A 2498 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.92;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2531,291,0 chrIV 1061634 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.55;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1563,177,0 chrIV 1062037 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.67;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2460,270,0 chrIV 1062952 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=15.78;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2116,237,0 chrIV 1062969 . C A 1986 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=15.52;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2019,219,0 chrIV 1063008 . G A 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=131;Dels=0.00;FS=3.185;HaplotypeScore=8.2403;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.586;QD=16.11;ReadPosRankSum=1.023;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2144,246,0 chrIV 1063173 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.08;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2113,234,0 chrIV 1063267 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.38;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1979,213,0 chrIV 1063756 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0948;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.05;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2181,249,0 chrIV 1063831 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=15.68;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1977,219,0 chrIV 1063848 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=15.83;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1853,207,0 chrIV 1063981 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.55;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1679,192,0 chrIV 1064173 . C G 1495 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.93;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1528,174,0 chrIV 1064285 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.23;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1802,198,0 chrIV 1064800 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.6594;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.05;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,102:109:99:2218,258,0 chrIV 1065037 . T C 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=112;Dels=0.00;FS=4.731;HaplotypeScore=9.4601;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.117;QD=19.05;ReadPosRankSum=1.667;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,106:112:99:2167,255,0 chrIV 1065082 . G T 2492 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2525,288,0 chrIV 1065349 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3107;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.84;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1819,198,0 chrIV 1065508 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.61;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1851,207,0 chrIV 1066159 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.89;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1434,168,0 chrIV 1066189 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.54;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1226,138,0 chrIV 1066190 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.25;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1292,138,0 chrIV 1066372 . C T 2333 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.22;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2366,258,0 chrIV 1066786 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.93;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1528,168,0 chrIV 1066840 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.72;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1374,156,0 chrIV 1066924 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.32;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1374,150,0 chrIV 1066939 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.56;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1461,168,0 chrIV 1067011 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3590;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1709,192,0 chrIV 1067053 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2240,243,0 chrIV 1067784 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1947,216,0 chrIV 1067876 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1548,183,0 chrIV 1068162 . A T 818 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.78;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:90:851,90,0 chrIV 1068192 . A G 789 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.53;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:93:822,93,0 chrIV 1068460 . G A 156.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.34;SB=-5.781e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:189,21,0 chrIV 1068544 . G A 273 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-1.699e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:33:306,33,0 chrIV 1068605 . T C 315 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:39:348,39,0 chrIV 1068819 . T A 860 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.89;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:893,99,0 chrIV 1069377 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.57;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1411,162,0 chrIV 1069872 . T A 1413 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.74;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1446,156,0 chrIV 1069993 . A G 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.10;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1784,207,0 chrIV 1070142 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.844;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=23.45;ReadPosRankSum=1.677;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1534,174,0 chrIV 1071558 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.1906;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.97;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1899,216,0 chrIV 1072450 . G C 1784 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.83;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1817,210,0 chrIV 1072765 . C T 2155 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.17;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2188,240,0 chrIV 1072815 . T C 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DP=93;Dels=0.00;FS=3.952;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.146;QD=21.87;ReadPosRankSum=1.311;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2067,234,0 chrIV 1073154 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.315;QD=19.13;ReadPosRankSum=1.638;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2195,249,0 chrIV 1073588 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.64;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2180,246,0 chrIV 1073621 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=3.8889;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.77;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2287,246,0 chrIV 1073654 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.67;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2012,228,0 chrIV 1074437 . T C 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.1265;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.428;QD=17.60;ReadPosRankSum=1.672;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1036,117,0 chrIV 1074500 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.02;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1014,114,0 chrIV 1074515 . T C 942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=11.960;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.173;QD=18.84;ReadPosRankSum=2.352;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:975,111,0 chrIV 1074527 . G A 1063 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.44;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1096,120,0 chrIV 1074638 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.27;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1662,189,0 chrIV 1074698 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.64;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1292,147,0 chrIV 1074737 . A G 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.209;QD=18.00;ReadPosRankSum=1.667;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1005,114,0 chrIV 1074754 . C T 943 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=15.46;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:976,108,0 chrIV 1074776 . T G 1189 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.18;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1222,144,0 chrIV 1074842 . T C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.154;QD=22.81;ReadPosRankSum=1.694;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2109,240,0 chrIV 1074890 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.51;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1613,183,0 chrIV 1074897 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.49;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1631,177,0 chrIV 1074927 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.83;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1144,132,0 chrIV 1075000 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.23;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1610,183,0 chrIV 1075079 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.97;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1611,177,0 chrIV 1075290 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.08;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1218,135,0 chrIV 1075326 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=15.87;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1160,126,0 chrIV 1075328 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=15.93;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1164,126,0 chrIV 1075347 . A G 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=89;Dels=0.00;FS=3.040;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-1.130;QD=12.09;ReadPosRankSum=2.333;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,82:89:99:1109,123,0 chrIV 1075360 . A T 1190 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=12.93;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1223,141,0 chrIV 1075419 . A G 2369 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.51;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2402,276,0 chrIV 1075428 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.79;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2185,252,0 chrIV 1075561 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.83;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1389,147,0 chrIV 1075570 . T G 1115 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=16.40;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1148,132,0 chrIV 1075592 . T A 811 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.90;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:844,93,0 chrIV 1075670 . C G 1126 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=15.86;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1159,138,0 chrIV 1075724 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=13.45;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1566,177,0 chrIV 1075812 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.72;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2123,234,0 chrIV 1075857 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.57;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1925,222,0 chrIV 1075948 . G T 1021 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.63;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1054,120,0 chrIV 1076035 . A G 1053 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.06;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1086,120,0 chrIV 1076423 . G T 1301 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.05;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1334,144,0 chrIV 1076910 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.08;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1623,180,0 chrIV 1077082 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.90;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2150,243,0 chrIV 1077398 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-1.005;QD=17.28;ReadPosRankSum=1.389;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:1916,200,0 chrIV 1077427 . T G 1700 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=14.05;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1733,201,0 chrIV 1077428 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=14.70;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1841,198,0 chrIV 1077453 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=2.906;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-1.801;QD=12.45;ReadPosRankSum=2.316;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:1639,183,0 chrIV 1077466 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=12.58;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1618,177,0 chrIV 1077851 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.531;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.276;QD=21.45;ReadPosRankSum=1.693;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1942,222,0 chrIV 1078309 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1607,183,0 chrIV 1078452 . T G 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-1.572;QD=15.93;ReadPosRankSum=0.834;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1769,198,0 chrIV 1078458 . A G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.743;HaplotypeScore=74.3813;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=0.560;QD=16.43;ReadPosRankSum=2.340;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1873,210,0 chrIV 1078468 . G A 229 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=82.1376;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=2.14;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:33:262,33,0 chrIV 1078606 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.28;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1629,174,0 chrIV 1078734 . T A 1667 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=10.0868;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=24.16;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1700,186,0 chrIV 1078766 . T C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=79;Dels=0.00;FS=7.549;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;MQRankSum=-2.197;QD=21.08;ReadPosRankSum=2.387;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1698,189,0 chrIV 1078767 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=20.86;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1660,189,0 chrIV 1078855 . T G 1350 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.09;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1383,159,0 chrIV 1079189 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.52;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1585,168,0 chrIV 1079210 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.70;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1274,138,0 chrIV 1079273 . C T 1508 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.24;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1541,168,0 chrIV 1079792 . T C 1994 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.21;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2027,237,0 chrIV 1079855 . A G 2661 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=13.1121;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.42;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2694,306,0 chrIV 1081043 . G C 440 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=16.30;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:54:473,54,0 chrIV 1081689 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.07;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1534,168,0 chrIV 1081731 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.29;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1478,165,0 chrIV 1081972 . C T 848 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=14.13;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:881,96,0 chrIV 1081973 . C T 846 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=13.87;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:96:879,96,0 chrIV 1081977 . G A 800 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=12.90;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:833,96,0 chrIV 1082074 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.6254;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.42;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2480,282,0 chrIV 1082202 . C T 2546 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.53;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2579,285,0 chrIV 1082232 . T C 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=113;Dels=0.00;FS=2.560;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.063;QD=18.63;ReadPosRankSum=2.938;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2138,243,0 chrIV 1082379 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.54;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1720,201,0 chrIV 1082404 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.08;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1931,219,0 chrIV 1082474 . T G 2720 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.2217;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.89;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,142:144:99:2753,312,0 chrIV 1082583 . T C 2581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;DP=125;Dels=0.00;FS=4.402;HaplotypeScore=13.4400;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.592;QD=20.65;ReadPosRankSum=1.592;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2614,297,0 chrIV 1082736 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.44;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1671,183,0 chrIV 1082751 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.49;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1630,180,0 chrIV 1082766 . T C 1107 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.03;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1140,129,0 chrIV 1083062 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.94;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2139,234,0 chrIV 1083088 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.210;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.617;QD=19.97;ReadPosRankSum=1.692;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1770,201,0 chrIV 1083112 . A G 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.352;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.197;QD=20.20;ReadPosRankSum=-1.250;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1629,186,0 chrIV 1083252 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.88;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1449,165,0 chrIV 1083596 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.844;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.072;QD=22.63;ReadPosRankSum=1.677;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1459,165,0 chrIV 1083624 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.19;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1406,159,0 chrIV 1083642 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.11;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1409,156,0 chrIV 1083804 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.52;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1859,207,0 chrIV 1083977 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.65;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1808,207,0 chrIV 1084057 . G T 1655 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.95;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1688,180,0 chrIV 1084110 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.66;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1645,186,0 chrIV 1084496 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.30;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2126,240,0 chrIV 1084864 . G C 1751 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.13;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1784,204,0 chrIV 1085100 . T G 1574 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.67;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1607,186,0 chrIV 1085196 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.866;QD=21.62;ReadPosRankSum=1.691;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1871,213,0 chrIV 1085247 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.54;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1420,150,0 chrIV 1085268 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.47;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1400,150,0 chrIV 1085550 . A C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=3.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.285;QD=17.97;ReadPosRankSum=2.374;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1201,138,0 chrIV 1085571 . C G 1086 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.24;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1119,129,0 chrIV 1085721 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.59;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1093,123,0 chrIV 1086024 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2186,240,0 chrIV 1086102 . C T 2385 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.85;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2418,264,0 chrIV 1086246 . A T 2939 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.93;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2972,336,0 chrIV 1086315 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=118;Dels=0.00;FS=2.880;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.503;QD=20.64;ReadPosRankSum=2.408;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2468,288,0 chrIV 1086492 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.24;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1861,213,0 chrIV 1086566 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.59;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1855,213,0 chrIV 1086618 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.39;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1991,231,0 chrIV 1086747 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.31;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1175,132,0 chrIV 1086753 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=15.11;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1121,123,0 chrIV 1086771 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=15.48;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1163,129,0 chrIV 1086807 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4590;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=11.26;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:889,102,0 chrIV 1087358 . A T 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.322;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.703;QD=17.88;ReadPosRankSum=1.629;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1857,207,0 chrIV 1087373 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8022;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.11;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2078,234,0 chrIV 1087970 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=15.59;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1202,135,0 chrIV 1088034 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.94;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1217,138,0 chrIV 1088057 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.51;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1301,147,0 chrIV 1088102 . A T 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.395;QD=20.45;ReadPosRankSum=1.672;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1219,132,0 chrIV 1088723 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.445;QD=20.68;ReadPosRankSum=1.633;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2204,246,0 chrIV 1088912 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.59;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1194,135,0 chrIV 1089304 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:81:735,81,0 chrIV 1089437 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1783,192,0 chrIV 1089625 . T C 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=3.051;HaplotypeScore=9.0129;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.338;QD=18.83;ReadPosRankSum=2.381;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1389,156,0 chrIV 1089672 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.84;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1139,126,0 chrIV 1089747 . A G 1774 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.16;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1807,207,0 chrIV 1090085 . T C 772 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=17.16;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:805,93,0 chrIV 1090107 . C G 643 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=50.9747;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=13.12;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:78:676,78,0 chrIV 1090133 . G A 186.03 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=5.5694;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=3.80;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:24:219,24,0 chrIV 1090145 . A G 506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=7.1269;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;MQRankSum=0.206;QD=8.58;ReadPosRankSum=1.674;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:63:539,63,0 chrIV 1090269 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.44;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1626,174,0 chrIV 1090306 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.68;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1659,189,0 chrIV 1090358 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.62;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1559,177,0 chrIV 1090405 . A G 1142 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.83;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1175,135,0 chrIV 1090407 . T C 1077 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=14.36;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1110,126,0 chrIV 1090410 . A G 1077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=6.428;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;MQRankSum=-2.162;QD=13.99;ReadPosRankSum=2.354;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1110,126,0 chrIV 1090578 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.42;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1249,141,0 chrIV 1090640 . C T 1150 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=16.67;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1183,129,0 chrIV 1090998 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.85;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1912,207,0 chrIV 1091087 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.42;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1433,165,0 chrIV 1091102 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.14;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1593,180,0 chrIV 1091213 . T A 2558 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.24;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2591,285,0 chrIV 1091480 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.45;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2028,225,0 chrIV 1091512 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8244;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.70;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1606,177,0 chrIV 1092281 . G T 1738 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.69;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1771,198,0 chrIV 1092358 . T C 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=64;Dels=0.00;FS=6.370;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.331;QD=17.80;ReadPosRankSum=2.373;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1172,135,0 chrIV 1092468 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.27;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1280,144,0 chrIV 1092516 . T A 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=72;Dels=0.00;FS=3.599;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.635;QD=18.03;ReadPosRankSum=1.683;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1331,150,0 chrIV 1093048 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=23.50;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2336,249,0 chrIV 1093051 . T G 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.108;QD=22.10;ReadPosRankSum=1.696;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2155,243,0 chrIV 1093075 . T G 1836 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.93;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1869,213,0 chrIV 1093234 . T C 1932 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.52;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1965,228,0 chrIV 1093368 . T G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=64;Dels=0.00;FS=4.983;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.677;QD=20.62;ReadPosRankSum=1.677;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1353,153,0 chrIV 1093378 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.89;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1498,162,0 chrIV 1093538 . C T 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.153;QD=20.78;ReadPosRankSum=1.644;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1675,180,0 chrIV 1093591 . C T 835 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.18;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:868,96,0 chrIV 1093593 . T C 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=0.206;QD=13.22;ReadPosRankSum=1.380;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:93:813,93,0 chrIV 1093746 . A C 1233 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.27;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1266,144,0 chrIV 1093912 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.50;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1923,219,0 chrIV 1095022 . A G 926 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.58;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:959,108,0 chrIV 1095230 . T G 1007 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.55;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1040,120,0 chrIV 1095303 . A G 385 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=14.81;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:48:418,48,0 chrIV 1095467 . T C 443 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=15.28;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:54:476,54,0 chrIV 1095472 . C T 455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=30;Dels=0.00;FS=43.757;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;MQRankSum=-0.158;QD=15.17;ReadPosRankSum=3.131;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:4,25:30:54:488,54,0 chrIV 1095515 . A G 330 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=22.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:15:42:363,42,0 chrIV 1095542 . T G 440 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=23.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:54:473,54,0 chrIV 1101779 . T G 667 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=18.03;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:700,81,0 chrIV 1101804 . C T 487 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=16.79;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:60:520,60,0 chrIV 1101915 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=0;QD=1.32;SB=-2.977e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:6:55,6,0 chrIV 1101927 . C T 50.97 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=2.55;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:83,9,0 chrIV 1101950 . A T 147.06 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=6.39;SB=-5.507e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:21:180,21,0 chrIV 1102024 . C A 512 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.26;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:60:545,60,0 chrIV 1102052 . A T 555 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.20;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:588,66,0 chrIV 1102082 . T C 627 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.90;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:75:660,75,0 chrIV 1102096 . C T 593 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.45;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:626,69,0 chrIV 1102257 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.35;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1058,117,0 chrIV 1102285 . A T 870 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.17;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:903,96,0 chrIV 1102315 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.18;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1097,120,0 chrIV 1102348 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.16;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1168,132,0 chrIV 1102674 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.75;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1455,165,0 chrIV 1102795 . T G 1173 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.46;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1206,138,0 chrIV 1103455 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.71;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1196,135,0 chrIV 1103480 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=16.94;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1083,120,0 chrIV 1103488 . T A 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.577;QD=17.33;ReadPosRankSum=1.677;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1142,126,0 chrIV 1103531 . A G 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=4.409;HaplotypeScore=3.7742;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.828;QD=16.58;ReadPosRankSum=1.682;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1177,135,0 chrIV 1103563 . T C 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.543;QD=19.94;ReadPosRankSum=1.681;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1369,156,0 chrIV 1104014 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.83;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1324,144,0 chrIV 1104188 . G A 907 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:940,102,0 chrIV 1104401 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.67;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1756,192,0 chrIV 1104470 . C T 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9177;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.582;QD=21.27;ReadPosRankSum=1.130;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1522,165,0 chrIV 1104497 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.82;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1313,147,0 chrIV 1104929 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.74;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2459,270,0 chrIV 1104966 . T G 2227 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.43;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2260,270,0 chrIV 1105249 . A T 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.620;QD=20.52;ReadPosRankSum=1.658;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1941,216,0 chrIV 1105660 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.61;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1740,201,0 chrIV 1105780 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.61;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1288,141,0 chrIV 1106241 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1696,192,0 chrIV 1106284 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.02;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1003,111,0 chrIV 1106617 . C G 1387 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.67;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1420,162,0 chrIV 1106884 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1485,168,0 chrIV 1107114 . T C 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.893;QD=19.44;ReadPosRankSum=2.176;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1083,120,0 chrIV 1107118 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.68;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1191,129,0 chrIV 1107187 . A G 775 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=15.20;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:808,93,0 chrIV 1107444 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.41;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1489,165,0 chrIV 1107470 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=15.16;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1003,108,0 chrIV 1108114 . T C 1722 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.75;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1755,201,0 chrIV 1108484 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=3.061;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.056;QD=16.62;ReadPosRankSum=2.338;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1130,132,0 chrIV 1108508 . T C 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.301;HaplotypeScore=63.9397;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.495;QD=14.60;ReadPosRankSum=1.683;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1055,120,0 chrIV 1108662 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.93;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2401,261,0 chrIV 1108696 . C G 2598 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.83;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2631,291,0 chrIV 1109331 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.97;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1375,156,0 chrIV 1109346 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.94;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1371,150,0 chrIV 1109358 . T C 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.987;QD=15.08;ReadPosRankSum=1.644;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1224,141,0 chrIV 1109436 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.13;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2069,234,0 chrIV 1109568 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.64;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1878,219,0 chrIV 1109736 . A C 1710 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.85;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1743,198,0 chrIV 1109890 . T G 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.965;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7604;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.082;QD=16.23;ReadPosRankSum=2.009;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:2,54:57:99:958,108,0 chrIV 1110009 . C T 475 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:54:508,54,0 chrIV 1110082 . T A 272 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=8.77;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:305,33,0 chrIV 1110182 . G A 169.03 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.90;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:24:202,24,0 chrIV 1110302 . A G 258 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.20;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:291,33,0 chrIV 1110323 . T C 276 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.969;QD=16.24;ReadPosRankSum=2.162;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:2,15:17:36:309,36,0 chrIV 1110440 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.31;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1467,168,0 chrIV 1110530 . A T 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=6.021;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.578;QD=23.57;ReadPosRankSum=1.636;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:99:905,99,0 chrIV 1110624 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.10;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1580,171,0 chrIV 1110829 . C G 1582 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.4802;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.38;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1615,186,0 chrIV 1111002 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.03;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2316,267,0 chrIV 1111210 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.06;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1821,213,0 chrIV 1111414 . T A 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.420;QD=21.02;ReadPosRankSum=1.697;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2156,243,0 chrIV 1111575 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.17;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1566,174,0 chrIV 1111626 . A C 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.97;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1437,168,0 chrIV 1111638 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=16.55;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1208,138,0 chrIV 1111780 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.31;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2341,258,0 chrIV 1113053 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.31;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2335,264,0 chrIV 1113116 . C T 2877 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.83;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2910,321,0 chrIV 1113224 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2401,261,0 chrIV 1113284 . T G 2121 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.64;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2154,246,0 chrIV 1113753 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.47;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1793,207,0 chrIV 1113766 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.406;QD=18.73;ReadPosRankSum=1.689;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,80:84:99:1606,186,0 chrIV 1113867 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.49;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1611,177,0 chrIV 1114164 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.28;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2267,252,0 chrIV 1114225 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.43;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1957,219,0 chrIV 1115198 . A G 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=3.074;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.021;QD=20.54;ReadPosRankSum=2.283;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1245,141,0 chrIV 1116164 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9249;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.49;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2471,273,0 chrIV 1116305 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.39;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1702,195,0 chrIV 1116482 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.90;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1334,150,0 chrIV 1116554 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=107;Dels=0.00;FS=2.425;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.788;QD=15.15;ReadPosRankSum=3.374;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:4,102:107:99:1654,189,0 chrIV 1116571 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=16.12;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1710,192,0 chrIV 1116662 . A G 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.522;QD=19.32;ReadPosRankSum=1.677;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1250,144,0 chrIV 1116909 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.05;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1444,162,0 chrIV 1117090 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.72;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1646,186,0 chrIV 1117115 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.73;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1517,162,0 chrIV 1117521 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6688;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.17;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1682,186,0 chrIV 1117839 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.92;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1467,162,0 chrIV 1118402 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.92;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1467,159,0 chrIV 1118418 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.36;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1263,135,0 chrIV 1118674 . G A 3277.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.46;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3277,366,0 chrIV 1118730 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.53;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2373,261,0 chrIV 1118976 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.683;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.661;QD=20.47;ReadPosRankSum=1.696;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2019,231,0 chrIV 1119216 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.0257;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.03;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1974,219,0 chrIV 1119792 . C T 2585 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.15;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,129:135:99:2618,291,0 chrIV 1119804 . G T 2540 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.84;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2573,285,0 chrIV 1119862 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.35;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1813,207,0 chrIV 1119888 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.676;QD=19.28;ReadPosRankSum=1.563;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1633,189,0 chrIV 1119900 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.50;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1587,180,0 chrIV 1119983 . A G 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.557;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.211;QD=20.85;ReadPosRankSum=-0.875;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1993,228,0 chrIV 1120016 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.05;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2177,243,0 chrIV 1120129 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.27;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1382,156,0 chrIV 1120348 . G A 613 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=13.93;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:646,72,0 chrIV 1120363 . A T 630 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.03;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:663,72,0 chrIV 1120367 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=15.30;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:599,69,0 chrIV 1120669 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.73;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1163,132,0 chrIV 1120689 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.17;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1203,138,0 chrIV 1120915 . A G 1277 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.51;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1310,150,0 chrIV 1120975 . T C 2814 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.32;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:0,128:132:99:2847,327,0 chrIV 1121002 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.03;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2831,315,0 chrIV 1121135 . T G 840 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:873,99,0 chrIV 1121173 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.54;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1535,165,0 chrIV 1121245 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.0368;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.99;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1989,222,0 chrIV 1121716 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1459,168,0 chrIV 1121893 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.72;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1532,168,0 chrIV 1122184 . G T 1818 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.92;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1851,201,0 chrIV 1122596 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1846,204,0 chrIV 1122844 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2016,225,0 chrIV 1122913 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=94;Dels=0.00;FS=8.225;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.683;QD=18.99;ReadPosRankSum=2.369;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:1818,210,0 chrIV 1122952 . A G 1394 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.10;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1427,162,0 chrIV 1123442 . G C 1506 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.82;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1539,177,0 chrIV 1123907 . C G 2456 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1484;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.65;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2489,288,0 chrIV 1123978 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.83;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2434,270,0 chrIV 1124047 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.441;HaplotypeScore=9.0997;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.275;QD=20.81;ReadPosRankSum=1.667;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2239,255,0 chrIV 1124083 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8811;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.05;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2391,258,0 chrIV 1124465 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.10;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2164,243,0 chrIV 1125071 . A G 1871 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.82;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1904,216,0 chrIV 1125098 . A T 1369 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=15.04;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1402,159,0 chrIV 1125103 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=14.55;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1430,159,0 chrIV 1125139 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.128;QD=14.82;ReadPosRankSum=1.659;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1441,162,0 chrIV 1125758 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.81;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1935,216,0 chrIV 1125821 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1997,225,0 chrIV 1126043 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.35;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1751,189,0 chrIV 1126090 . G C 1589 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.55;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1622,186,0 chrIV 1126095 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.93;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1692,192,0 chrIV 1126171 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.93;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2040,234,0 chrIV 1126206 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.43;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2037,222,0 chrIV 1126266 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.10;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1881,207,0 chrIV 1126318 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.48;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1319,144,0 chrIV 1126330 . A G 916 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=16.36;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:949,105,0 chrIV 1126356 . G A 959 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=14.98;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:992,108,0 chrIV 1126399 . G T 981 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.1650;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=14.01;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1014,114,0 chrIV 1126486 . A C 2155 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.59;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2188,249,0 chrIV 1126654 . A T 1558 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.77;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1591,177,0 chrIV 1126730 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.32;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1159,132,0 chrIV 1126806 . A G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.110;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.653;QD=20.64;ReadPosRankSum=1.693;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1849,204,0 chrIV 1126921 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1898,213,0 chrIV 1127082 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.29;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1569,180,0 chrIV 1127097 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.83;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1679,183,0 chrIV 1127248 . T C 2074 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.14;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2107,237,0 chrIV 1127449 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.69;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2309,258,0 chrIV 1127544 . C G 2562 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=16.9182;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.70;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,130:137:99:2595,297,0 chrIV 1127676 . G C 3062 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.0776;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.14;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3095,345,0 chrIV 1127809 . G A 3691.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-2.119e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3691,408,0 chrIV 1127919 . T C 3559.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.31;SB=-2.056e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3559,405,0 chrIV 1128039 . G A 2680 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.36;SB=-1.710e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2713,294,0 chrIV 1128060 . G A 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=3.157;HaplotypeScore=9.3589;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.080;QD=17.48;ReadPosRankSum=-0.172;SB=-1.848e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:2742,306,0 chrIV 1128108 . G A 2698 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=17.87;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2731,303,0 chrIV 1128699 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.424;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.545;QD=19.98;ReadPosRankSum=1.604;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2191,249,0 chrIV 1128738 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.73;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2336,255,0 chrIV 1128763 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.5792;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.36;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:2041,231,0 chrIV 1128837 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=78;Dels=0.00;FS=6.428;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.881;QD=19.86;ReadPosRankSum=2.258;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1582,183,0 chrIV 1128918 . A G 2078 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.79;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2111,237,0 chrIV 1128924 . T C 1902 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.812;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=0.915;QD=17.78;ReadPosRankSum=1.667;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1935,216,0 chrIV 1128927 . T C 1981 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=5.068;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.667;QD=18.69;ReadPosRankSum=1.699;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2014,228,0 chrIV 1129373 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=83;Dels=0.00;FS=10.023;HaplotypeScore=12.7688;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.012;QD=18.07;ReadPosRankSum=2.916;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1533,174,0 chrIV 1129434 . A G 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.012;QD=21.12;ReadPosRankSum=1.687;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1659,186,0 chrIV 1129539 . C A 1238 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=15.67;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1271,138,0 chrIV 1129543 . A C 1125 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=15.85;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1158,132,0 chrIV 1129550 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=13.52;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:925,105,0 chrIV 1129573 . C T 832 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=13.21;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:96:865,96,0 chrIV 1129980 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=94;Dels=0.00;FS=2.447;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.789;QD=19.53;ReadPosRankSum=3.287;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:1869,213,0 chrIV 1130157 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.25;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2052,243,0 chrIV 1130451 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.08;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1769,195,0 chrIV 1130515 . C A 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.362;QD=18.45;ReadPosRankSum=0.286;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1730,189,0 chrIV 1130680 . G A 317 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=15.10;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:350,39,0 chrIV 1130895 . A T 12.30 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=22.7408;MLEAC=1;MLEAF=0.500;MQ=49.70;MQ0=0;MQRankSum=0.962;QD=0.47;ReadPosRankSum=-0.209;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:3,22:25:18:42,0,18 chrIV 1131564 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.90;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2136,228,0 chrIV 1132333 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.796;QD=20.78;ReadPosRankSum=1.592;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1571,180,0 chrIV 1132357 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=2.631;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.127;QD=19.47;ReadPosRankSum=2.305;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1357,153,0 chrIV 1132452 . T C 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.816;QD=20.00;ReadPosRankSum=1.613;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1773,201,0 chrIV 1132581 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1634,186,0 chrIV 1132828 . C A 1354 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1387,150,0 chrIV 1132989 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.89;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2135,240,0 chrIV 1133213 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.00;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1944,207,0 chrIV 1133503 . A T 2187 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.18;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2220,249,0 chrIV 1133593 . A G 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.4445;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.424;QD=20.30;ReadPosRankSum=1.655;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1901,216,0 chrIV 1133710 . A T 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.030;QD=18.42;ReadPosRankSum=1.702;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2133,240,0 chrIV 1133759 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.23;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1802,195,0 chrIV 1133767 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.05;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1585,183,0 chrIV 1133923 . G C 1614 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.69;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1647,195,0 chrIV 1134655 . T A 738 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.57;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:771,84,0 chrIV 1134931 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.17;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1543,165,0 chrIV 1135187 . C G 1728 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.87;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1761,201,0 chrIV 1135217 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.44;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1724,186,0 chrIV 1135243 . C A 1539 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.54;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1572,168,0 chrIV 1135287 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.104;QD=18.83;ReadPosRankSum=1.690;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1615,177,0 chrIV 1135309 . C G 1413 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.09;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1446,168,0 chrIV 1135499 . T A 1523 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.28;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1556,171,0 chrIV 1135592 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=13.52;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:912,105,0 chrIV 1135612 . T C 683 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=54.0733;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=9.90;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:81:716,81,0 chrIV 1136116 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.26;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1661,183,0 chrIV 1136171 . C G 1987 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.84;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2020,231,0 chrIV 1136363 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.165;QD=22.36;ReadPosRankSum=1.691;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1911,216,0 chrIV 1136387 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.58;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1704,192,0 chrIV 1136465 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.03;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1331,153,0 chrIV 1136470 . T A 1407 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.54;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1440,156,0 chrIV 1136725 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.07;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1578,168,0 chrIV 1136906 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.72;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1492,171,0 chrIV 1137089 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.66;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2091,237,0 chrIV 1137328 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.71;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1938,222,0 chrIV 1137538 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.66;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1704,186,0 chrIV 1137630 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1563,177,0 chrIV 1137761 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0346;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.52;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1181,129,0 chrIV 1137794 . T C 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.409;QD=19.42;ReadPosRankSum=1.669;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,54:57:99:1140,132,0 chrIV 1138205 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.41;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1339,153,0 chrIV 1138235 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.80;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1472,162,0 chrIV 1138358 . T C 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=85;Dels=0.00;FS=3.063;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.308;QD=19.82;ReadPosRankSum=2.391;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1718,195,0 chrIV 1138406 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3948;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.95;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2007,228,0 chrIV 1138987 . A C 2045 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.53;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2078,243,0 chrIV 1139004 . C G 1917 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.84;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,87:92:99:1950,222,0 chrIV 1139381 . T A 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.957;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.890;QD=17.68;ReadPosRankSum=2.304;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1819,210,0 chrIV 1139520 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.03;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1645,183,0 chrIV 1140038 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.07;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1719,198,0 chrIV 1140095 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.02;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2156,246,0 chrIV 1140165 . T C 2605 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2638,300,0 chrIV 1140266 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.85;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1442,159,0 chrIV 1140344 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.14;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1296,147,0 chrIV 1140524 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.07;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2581,285,0 chrIV 1140780 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=79;Dels=0.00;FS=3.049;HaplotypeScore=6.5402;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.921;QD=20.42;ReadPosRankSum=1.919;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1646,189,0 chrIV 1141061 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1968;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.10;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1641,189,0 chrIV 1141081 . T G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.288;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-1.288;QD=17.82;ReadPosRankSum=1.643;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1423,162,0 chrIV 1141130 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.06;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1024,111,0 chrIV 1141245 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1266,135,0 chrIV 1141284 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.20;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1114,120,0 chrIV 1141422 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.28;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1453,159,0 chrIV 1141710 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.009;QD=21.19;ReadPosRankSum=1.694;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1961,222,0 chrIV 1141725 . T C 1966 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.66;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1999,228,0 chrIV 1142958 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1319,150,0 chrIV 1143051 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.20;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:987,111,0 chrIV 1143858 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.96;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2346,267,0 chrIV 1143894 . A C 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=115;Dels=0.00;FS=5.486;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.726;QD=18.49;ReadPosRankSum=2.921;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:3,111:115:99:2159,252,0 chrIV 1144428 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.31;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1483,168,0 chrIV 1144479 . A T 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.522;QD=18.00;ReadPosRankSum=1.677;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1167,126,0 chrIV 1144484 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.54;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1173,126,0 chrIV 1144891 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.78;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1425,159,0 chrIV 1145437 . A G 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=78;Dels=0.00;FS=13.633;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.906;QD=19.41;ReadPosRankSum=2.771;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:3,72:78:99:1547,177,0 chrIV 1145628 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.71;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1690,186,0 chrIV 1146161 . G T 1269 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.52;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1302,141,0 chrIV 1146376 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.89;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2485,285,0 chrIV 1146468 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.44;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1132,132,0 chrIV 1146477 . A G 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=8.016;HaplotypeScore=7.9281;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.003;QD=16.41;ReadPosRankSum=1.611;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:985,114,0 chrIV 1146894 . T C 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=78;Dels=0.00;FS=5.963;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.346;QD=20.06;ReadPosRankSum=1.640;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1598,183,0 chrIV 1147043 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.57;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1703,189,0 chrIV 1147285 . A T 1859 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1892,213,0 chrIV 1147320 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1899,204,0 chrIV 1147489 . T A 1818 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.61;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1851,198,0 chrIV 1147580 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.94;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2426,270,0 chrIV 1147805 . T G 2311 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.42;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2344,267,0 chrIV 1147847 . C A 2175 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.53;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2208,246,0 chrIV 1147937 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=16.86;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1871,204,0 chrIV 1147951 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=16.45;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1826,210,0 chrIV 1148075 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1605,180,0 chrIV 1148435 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.65;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1706,195,0 chrIV 1148558 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.68;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1938,222,0 chrIV 1148573 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4372;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.45;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2075,222,0 chrIV 1148689 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.45;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1979,222,0 chrIV 1148726 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.85;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1576,171,0 chrIV 1148912 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.871;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.877;QD=19.17;ReadPosRankSum=2.359;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2122,237,0 chrIV 1149107 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.48;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1582,177,0 chrIV 1149128 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.47;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1751,192,0 chrIV 1149368 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.76;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1258,138,0 chrIV 1149478 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=13.90;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1284,144,0 chrIV 1149488 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=13.91;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1466,165,0 chrIV 1149565 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.96;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2229,252,0 chrIV 1149761 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.25;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1223,138,0 chrIV 1149762 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.96;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1228,138,0 chrIV 1149773 . C G 1180 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=20.00;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1213,141,0 chrIV 1150131 . A G 701 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.45;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:734,84,0 chrIV 1150196 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.54;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1042,120,0 chrIV 1150248 . G A 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.253;QD=18.75;ReadPosRankSum=-0.072;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1833,182,0 chrIV 1150352 . G C 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.27;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2351,267,0 chrIV 1150413 . T A 1708 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.18;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1741,195,0 chrIV 1150452 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.18;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1541,177,0 chrIV 1150562 . C A 1982 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.02;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2015,222,0 chrIV 1150605 . A G 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=117;Dels=0.00;FS=12.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-2.557;QD=19.84;ReadPosRankSum=3.382;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2354,273,0 chrIV 1150620 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.22;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2378,264,0 chrIV 1150675 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=119;Dels=0.00;FS=6.130;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.137;QD=19.24;ReadPosRankSum=2.941;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2323,261,0 chrIV 1150691 . A G 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=114;Dels=0.00;FS=9.749;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.830;QD=20.28;ReadPosRankSum=2.920;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2345,273,0 chrIV 1150776 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=21.69;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1985,231,0 chrIV 1150827 . A G 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=1.575;QD=16.87;ReadPosRankSum=1.522;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1163,138,0 chrIV 1150828 . G A 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=67;Dels=0.01;FS=3.282;HaplotypeScore=2.6203;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.892;QD=17.49;ReadPosRankSum=0.997;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1205,138,0 chrIV 1150963 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=75;Dels=0.00;FS=6.752;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=1.488;QD=18.27;ReadPosRankSum=1.635;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,70:75:99:1403,162,0 chrIV 1150964 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=18.79;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1348,153,0 chrIV 1151001 . T A 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=104;Dels=0.00;FS=8.506;HaplotypeScore=10.2340;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=1.303;QD=17.47;ReadPosRankSum=2.211;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1850,207,0 chrIV 1151056 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.702;DP=115;Dels=0.00;FS=3.705;HaplotypeScore=7.3204;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=0.407;QD=20.58;ReadPosRankSum=0.768;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2400,279,0 chrIV 1151094 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=18.94;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1359,147,0 chrIV 1151115 . T G 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=7.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;MQRankSum=-0.385;QD=14.16;ReadPosRankSum=1.668;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:93:812,93,0 chrIV 1151146 . A G 448 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=0;QD=9.96;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:481,57,0 chrIV 1151152 . G A 472 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=9.63;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:60:505,60,0 chrIV 1151169 . G A 508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.033;DP=54;Dels=0.00;FS=10.253;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=1;MQRankSum=-1.732;QD=9.41;ReadPosRankSum=0.425;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:2,52:54:42:541,42,0 chrIV 1151209 . A G 98.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;DP=65;Dels=0.00;FS=34.576;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=30.67;MQ0=1;MQRankSum=-6.868;QD=1.51;ReadPosRankSum=1.191;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:31,34:65:99:128,0,598 chrIV 1151218 . T C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;DP=66;Dels=0.00;FS=42.959;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=30.56;MQ0=1;MQRankSum=-6.073;QD=0.62;ReadPosRankSum=-0.559;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:36,30:66:71:71,0,640 chrIV 1151234 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=1;QD=13.51;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1006,117,0 chrIV 1151283 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=1;MQRankSum=-0.688;QD=18.37;ReadPosRankSum=1.685;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1411,162,0 chrIV 1151301 . T C 682.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DP=71;Dels=0.00;FS=96.045;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=1;MQRankSum=0.963;QD=9.61;ReadPosRankSum=0.153;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:35,36:71:99:712,0,300 chrIV 1151306 . A G 668.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.708;DP=75;Dels=0.00;FS=130.473;HaplotypeScore=3.4429;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=1;MQRankSum=-0.348;QD=8.91;ReadPosRankSum=-0.794;SB=7.160e-03 GT:AD:DP:GQ:PL 0/1:41,34:75:99:698,0,379 chrIV 1151314 . A G 472.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.284;DP=71;Dels=0.00;FS=103.983;HaplotypeScore=2.6525;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=1;MQRankSum=0.725;QD=6.65;ReadPosRankSum=2.368;SB=-6.502e+01 GT:AD:DP:GQ:PL 0/1:29,42:71:99:502,0,524 chrIV 1151324 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6609;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=1;QD=17.82;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1245,135,0 chrIV 1151369 . A G 469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;MQRankSum=0.456;QD=12.34;ReadPosRankSum=1.641;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:57:502,57,0 chrIV 1151759 . T C 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.920;QD=21.17;ReadPosRankSum=1.678;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1409,162,0 chrIV 1151799 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.15;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:1027,117,0 chrIV 1151893 . T G 916 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.82;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:949,108,0 chrIV 1152100 . T G 1264 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.00;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1297,150,0 chrIV 1152109 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=15.66;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1223,141,0 chrIV 1152895 . G T 1120 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1153,126,0 chrIV 1153009 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.7162;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1088,123,0 chrIV 1153171 . G T 1753 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1786,198,0 chrIV 1153303 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.26;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1479,162,0 chrIV 1153699 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.85;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1015,111,0 chrIV 1153966 . T C 496 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.71;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:529,60,0 chrIV 1154321 . C T 1058 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=34.21;MQ0=6;QD=20.75;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1091,117,0 chrIV 1154405 . A G 517 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=34;QD=8.21;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:63:550,63,0 chrIV 1154411 . G A 573 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=36;QD=9.24;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:22,40:62:66:606,66,0 chrIV 1154412 . A T 509 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=36;QD=8.21;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:22,40:62:63:542,63,0 chrIV 1154468 . A G 797 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=28;QD=13.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:90:830,90,0 chrIV 1154507 . C G 561 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=19;QD=11.22;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:15,33:50:66:594,66,0 chrIV 1154509 . A T 584 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.01;MQ0=19;QD=12.43;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:17,30:47:66:617,66,0 chrIV 1154513 . A G 523 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=20;MQRankSum=-1.733;QD=10.90;ReadPosRankSum=1.609;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:19,29:48:63:556,63,0 chrIV 1154517 . G C 520 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.09;MQ0=17;QD=11.82;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:17,27:44:63:553,63,0 chrIV 1154518 . C A 548 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=15;QD=13.05;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:15,27:42:63:581,63,0 chrIV 1154523 . G T 418 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=16;QD=10.72;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:16,23:39:51:451,51,0 chrIV 1154524 . T G 417 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=16;QD=10.69;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:16,23:39:51:450,51,0 chrIV 1154525 . A G 417 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=16;QD=10.69;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:16,23:39:51:450,51,0 chrIV 1154528 . A G 428 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=17;QD=8.39;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:16,34:51:51:461,51,0 chrIV 1154538 . G C 535 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=19;QD=8.63;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:18,44:62:66:568,66,0 chrIV 1154539 . C A 577 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=24;QD=8.49;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:18,44:68:66:610,66,0 chrIV 1154573 . A G 470 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=23;QD=6.71;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:22,48:70:57:503,57,0 chrIV 1154574 . A T 498 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=23;QD=7.11;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:22,48:70:57:531,57,0 chrIV 1154575 . C T 445 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=25.20;MQ0=22;QD=6.45;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:21,48:69:54:478,54,0 chrIV 1154576 . A G 476 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=23;QD=6.70;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:22,48:71:57:509,57,0 chrIV 1154583 . T A 513 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=26;QD=6.26;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:22,60:82:60:546,60,0 chrIV 1155607 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.61;MQ0=51;QD=0.38;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:48,10:58:6:53,6,0 chrIV 1155620 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.33;MQ0=47;QD=0.79;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:44,12:56:9:76,9,0 chrIV 1155623 . C T 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.07;MQ0=50;QD=0.88;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:46,13:59:9:84,9,0 chrIV 1155625 . T G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.90;MQ0=52;QD=0.77;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:46,14:61:9:79,9,0 chrIV 1155661 . T C 169.03 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.61;MQ0=61;QD=2.22;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,76:76:24:202,24,0 chrIV 1155755 . T A 346 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=39;QD=6.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:42:379,42,0 chrIV 1155785 . G T 301 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=30;QD=7.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:10,33:43:36:334,36,0 chrIV 1156050 . A G 594 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=17.47;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:627,72,0 chrIV 1156081 . T C 439 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=16.26;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:472,54,0 chrIV 1156180 . A G 565 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=17.12;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:598,69,0 chrIV 1156399 . T C 329 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=13.71;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:362,42,0 chrIV 1156406 . A G 356 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.24;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:389,45,0 chrIV 1156803 . T C 398 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=14.74;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:431,48,0 chrIV 1156908 . C T 475 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.00;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:54:508,54,0 chrIV 1156945 . T G 240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.387;QD=12.00;ReadPosRankSum=1.387;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:30:273,30,0 chrIV 1157004 . C T 272 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=10.07;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:305,33,0 chrIV 1157008 . T C 261 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=10.04;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:294,33,0 chrIV 1157122 . T C 394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.150;QD=15.76;ReadPosRankSum=2.254;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,23:25:48:427,48,0 chrIV 1157139 . C A 459 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.36;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:25:54:492,54,0 chrIV 1157212 . C T 707 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.20;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:740,81,0 chrIV 1157251 . A G 650 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.31;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:683,78,0 chrIV 1157271 . A G 746 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.61;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:779,87,0 chrIV 1157324 . T A 523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.436;DP=35;Dels=0.00;FS=5.441;HaplotypeScore=26.2294;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.446;QD=14.94;ReadPosRankSum=-0.050;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:63:556,63,0 chrIV 1157841 . C G 897 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.69;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:930,102,0 chrIV 1157970 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.34;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1270,144,0 chrIV 1158004 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.66;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1246,138,0 chrIV 1158072 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.07;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1438,165,0 chrIV 1158117 . A T 1234 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.23;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1267,141,0 chrIV 1158334 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.10;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1155,132,0 chrIV 1158385 . G C 1217 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.35;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1250,144,0 chrIV 1158404 . C G 1373 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.49;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1406,162,0 chrIV 1158479 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=17.70;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1573,180,0 chrIV 1158484 . A G 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=84;Dels=0.00;FS=6.620;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.401;QD=16.75;ReadPosRankSum=2.153;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1440,162,0 chrIV 1158528 . C T 920 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=13.53;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:953,108,0 chrIV 1158562 . C G 736 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;QD=11.50;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:87:769,87,0 chrIV 1158571 . C A 764 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=11.40;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:87:797,87,0 chrIV 1158574 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=12.00;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:849,93,0 chrIV 1158582 . G A 724 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=10.65;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:84:757,84,0 chrIV 1158614 . G C 952 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=13.60;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:985,111,0 chrIV 1158667 . A G 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.9348;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.562;QD=16.55;ReadPosRankSum=1.592;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1258,141,0 chrIV 1158727 . C T 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.304;QD=17.67;ReadPosRankSum=-1.561;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1464,159,0 chrIV 1158961 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.82;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1449,162,0 chrIV 1159022 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.52;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1255,147,0 chrIV 1159053 . G A 1150 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=19.49;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1183,129,0 chrIV 1159088 . T A 1064 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=22.17;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1097,123,0 chrIV 1159113 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=22.33;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:837,93,0 chrIV 1159133 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=18.38;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:658,78,0 chrIV 1159150 . T A 453 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=16.78;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:486,54,0 chrIV 1159171 . T C 314 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=13.65;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:347,39,0 chrIV 1159174 . A C 262 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=11.91;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:36:295,36,0 chrIV 1159206 . C T 425 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=17.00;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:48:458,48,0 chrIV 1159231 . C T 473 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.92;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:54:506,54,0 chrIV 1159249 . C T 639 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.75;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:72:672,72,0 chrIV 1159301 . G A 440 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=13.33;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:473,54,0 chrIV 1159357 . A G 323 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=15.38;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:356,42,0 chrIV 1159364 . G C 329 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;QD=14.95;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:42:362,42,0 chrIV 1159372 . G T 232 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.286;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;MQRankSum=-2.341;QD=10.55;ReadPosRankSum=2.227;SB=1.45 GT:AD:DP:GQ:PL 1/1:2,20:22:33:265,33,0 chrIV 1159375 . C A 218 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.043;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;MQRankSum=-3.107;QD=9.91;ReadPosRankSum=2.171;SB=3.00 GT:AD:DP:GQ:PL 1/1:4,18:22:30:251,30,0 chrIV 1159381 . C T 303 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=13.17;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:336,39,0 chrIV 1159389 . C T 360 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=16.36;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:393,45,0 chrIV 1159396 . T G 323 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.68;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,21:22:42:356,42,0 chrIV 1159689 . A G 631 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=5;QD=20.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:75:664,75,0 chrIV 1159713 . C T 388 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=13;QD=13.38;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:45:421,45,0 chrIV 1159797 . A G 385 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=43;QD=6.02;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:48:418,48,0 chrIV 1159860 . A G 731 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=38;QD=10.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:72:84:764,84,0 chrIV 1160022 . G T 498 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.27;MQ0=42;QD=6.73;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:10,64:74:60:531,60,0 chrIV 1161053 . T C 124.13 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.33;MQ0=55;QD=1.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:63:18:157,18,0 chrIV 1161105 . G A 313 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.96;MQ0=44;QD=5.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,41:57:39:346,39,0 chrIV 1161132 . G A 335 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=35;QD=5.88;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:19,38:57:42:368,42,0 chrIV 1161147 . T A 235 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=31;MQRankSum=1.037;QD=4.35;ReadPosRankSum=2.237;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:2,52:54:30:268,30,0 chrIV 1161206 . T G 123.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=19;QD=2.68;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:19,27:46:18:156,18,0 chrIV 1161213 . T A 172.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=17;QD=4.10;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:17,25:42:24:205,24,0 chrIV 1161214 . C T 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=18;QD=4.35;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:17,25:43:24:220,24,0 chrIV 1161225 . G A 173.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.54;MQ0=14;QD=4.68;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:14,23:37:24:206,24,0 chrIV 1161228 . T A 174.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=15;QD=4.70;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:15,22:37:24:207,24,0 chrIV 1161230 . A T 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=16;QD=4.92;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:16,22:38:24:220,24,0 chrIV 1161242 . A G 73.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=2.37;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:106,12,0 chrIV 1161243 . A C 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=2.47;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:109,12,0 chrIV 1161246 . C T 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=1.52;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:14,16:31:9:79,9,0 chrIV 1161249 . G A 76.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=14;QD=2.55;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:14,16:30:12:109,12,0 chrIV 1161251 . G T 78.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=14;QD=2.62;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:14,16:30:12:111,12,0 chrIV 1161252 . G A 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.74;MQ0=14;QD=2.42;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:14,16:30:12:105,12,0 chrIV 1161258 . T C 71.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=15;MQRankSum=1.073;QD=1.99;ReadPosRankSum=1.569;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:16,20:36:12:104,12,0 chrIV 1161261 . G A 80.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=15;QD=2.24;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:15,21:36:12:113,12,0 chrIV 1161264 . A G 99.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=16;QD=2.76;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:16,20:36:15:132,15,0 chrIV 1161267 . A C 72.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=2.34;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:105,12,0 chrIV 1161269 . C G 82.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=2.66;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:115,12,0 chrIV 1161276 . A G 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=15;QD=2.50;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:15,16:31:12:110,12,0 chrIV 1161282 . C T 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=13;QD=2.00;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:13,13:26:9:84,9,0 chrIV 1161283 . A T 54.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=13;QD=2.11;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:13,13:26:9:87,9,0 chrIV 1161289 . G T 52.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=13;QD=2.12;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:13,12:25:9:85,9,0 chrIV 1161357 . G T 51.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.89;MQ0=6;QD=2.89;SB=-5.797e+01 GT:AD:DP:GQ:PL 1/1:4,14:18:9:84,9,0 chrIV 1161361 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=6;QD=2.35;SB=-5.497e+01 GT:AD:DP:GQ:PL 1/1:4,14:20:9:79,9,0 chrIV 1161455 . A G 989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=56;Dels=0.00;FS=5.431;HaplotypeScore=13.8632;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;MQRankSum=-0.049;QD=17.66;ReadPosRankSum=3.290;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:4,51:56:99:1022,117,0 chrIV 1161539 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=22.83;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1517,165,0 chrIV 1161556 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=22.40;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1377,150,0 chrIV 1161629 . C T 912 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=32.2989;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=16.00;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:945,105,0 chrIV 1161688 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.93;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1093,126,0 chrIV 1161819 . T C 2186 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.22;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2219,249,0 chrIV 1161890 . G A 1403 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.391;DP=82;Dels=0.00;FS=7.704;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.329;QD=17.11;ReadPosRankSum=3.352;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1436,165,0 chrIV 1161891 . A G 1398 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.585;DP=82;Dels=0.00;FS=7.704;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.465;QD=17.05;ReadPosRankSum=3.256;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1431,168,0 chrIV 1161894 . A G 1402 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.01;FS=6.943;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-1.727;QD=18.45;ReadPosRankSum=2.318;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1435,168,0 chrIV 1161927 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.06;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1125,132,0 chrIV 1161960 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.84;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1139,129,0 chrIV 1161972 . A T 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-1.192;QD=17.29;ReadPosRankSum=1.687;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1364,147,0 chrIV 1162080 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.39;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1578,183,0 chrIV 1162125 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6678;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=14.39;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:997,117,0 chrIV 1162133 . A C 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;MQRankSum=-0.306;QD=15.57;ReadPosRankSum=1.681;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1107,129,0 chrIV 1162357 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.083;QD=20.47;ReadPosRankSum=1.624;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1343,150,0 chrIV 1162396 . C G 1291 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.56;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:99:1324,153,0 chrIV 1162444 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=22.49;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1135,126,0 chrIV 1162458 . T C 1036 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=20.72;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1069,123,0 chrIV 1162563 . A G 609 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=12.96;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:642,72,0 chrIV 1162582 . G A 689 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=11.48;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:78:722,78,0 chrIV 1162592 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=12.38;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:90:813,90,0 chrIV 1162597 . T G 732 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=11.26;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:765,87,0 chrIV 1162608 . C T 471 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=7.98;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:60:504,60,0 chrIV 1162650 . A C 816 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=14.07;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:849,96,0 chrIV 1162688 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.06;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1128,129,0 chrIV 1162808 . T C 546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=73;Dels=0.00;FS=2.971;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;MQRankSum=-1.436;QD=7.48;ReadPosRankSum=2.349;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:69:579,69,0 chrIV 1163209 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-0.090;QD=21.18;ReadPosRankSum=1.702;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2511,288,0 chrIV 1163271 . T C 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.569;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.358;QD=19.77;ReadPosRankSum=1.702;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2326,267,0 chrIV 1163371 . G T 1351 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=76.4054;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=16.08;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1384,153,0 chrIV 1163374 . A G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.209;DP=82;Dels=0.00;FS=1.024;HaplotypeScore=77.9715;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;MQRankSum=0.801;QD=0.50;ReadPosRankSum=-2.951;SB=-4.897e+01 GT:AD:DP:GQ:PL 1/1:65,17:82:9:73,9,0 chrIV 1163436 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=17.51;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1679,180,0 chrIV 1163487 . T C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=6.285;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.807;QD=19.07;ReadPosRankSum=2.362;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1635,189,0 chrIV 1163502 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.666;QD=18.57;ReadPosRankSum=1.694;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1723,195,0 chrIV 1163713 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.27;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2181,243,0 chrIV 1163794 . C T 2032 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2559;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=19.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2065,228,0 chrIV 1163806 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=18.35;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1813,204,0 chrIV 1164181 . G A 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=3;MQRankSum=-1.121;QD=15.93;ReadPosRankSum=-1.412;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,123:138:99:2232,255,0 chrIV 1164250 . G A 646.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;DP=188;Dels=0.00;FS=24.452;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=0;MQRankSum=-9.786;QD=3.44;ReadPosRankSum=2.519;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:132,55:188:99:676,0,2519 chrIV 1164268 . A G 2425.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;DP=202;Dels=0.00;FS=37.307;HaplotypeScore=6.5879;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=10.556;QD=12.00;ReadPosRankSum=0.769;SB=-1.079e+03 GT:AD:DP:GQ:PL 0/1:69,133:202:99:2455,0,892 chrIV 1164310 . G A 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DP=142;Dels=0.00;FS=19.181;HaplotypeScore=9.8636;MLEAC=1;MLEAF=0.500;MQ=51.28;MQ0=0;MQRankSum=-7.333;QD=1.43;ReadPosRankSum=2.148;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,31:142:99:233,0,1847 chrIV 1164312 . A C 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.212;DP=140;Dels=0.00;FS=20.130;HaplotypeScore=8.2862;MLEAC=1;MLEAF=0.500;MQ=51.46;MQ0=0;MQRankSum=-7.140;QD=1.25;ReadPosRankSum=2.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,28:140:99:205,0,1932 chrIV 1164448 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=20.32;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1537,168,0 chrIV 1164487 . T G 1212 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=18.65;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1245,138,0 chrIV 1164502 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=15.38;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1094,126,0 chrIV 1164726 . A C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=0.306;QD=20.29;ReadPosRankSum=1.172;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1433,165,0 chrIV 1164730 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2824;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=19.38;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1312,156,0 chrIV 1164785 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=29.9618;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.88;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:742,81,0 chrIV 1165180 . A G 410 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=20.50;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:443,51,0 chrIV 1165247 . G C 519 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.96;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:552,63,0 chrIV 1165262 . T A 654 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.24;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:687,78,0 chrIV 1165519 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.67;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:987,111,0 chrIV 1165565 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=20.36;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:766,84,0 chrIV 1165586 . A G 472 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=12.42;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,36:38:60:505,60,0 chrIV 1165587 . G C 487 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=12.49;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:60:520,60,0 chrIV 1165728 . A G 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=47;Dels=0.00;FS=6.307;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=1.153;QD=19.40;ReadPosRankSum=2.851;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:99:945,108,0 chrIV 1165910 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-0.241;QD=19.36;ReadPosRankSum=1.684;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1427,162,0 chrIV 1165956 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=15.93;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:909,105,0 chrIV 1165957 . C T 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=0.371;QD=16.14;ReadPosRankSum=1.547;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:937,105,0 chrIV 1166114 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.38;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1893,210,0 chrIV 1166128 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.77;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1526,174,0 chrIV 1166150 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=18.49;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1494,162,0 chrIV 1166200 . C T 633 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=8.12;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:75:666,75,0 chrIV 1166214 . A G 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.363;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;MQRankSum=-1.195;QD=9.92;ReadPosRankSum=1.683;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:84:747,84,0 chrIV 1166232 . T A 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1781;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.506;QD=10.52;ReadPosRankSum=2.389;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:896,102,0 chrIV 1166364 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.09;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2043,228,0 chrIV 1166461 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=21.26;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1564,171,0 chrIV 1166561 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.42;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1606,183,0 chrIV 1166645 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=32.3736;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.51;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1329,147,0 chrIV 1166693 . G A 1541 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=10.0921;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.01;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1574,171,0 chrIV 1166741 . G A 686 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7881;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.19;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:719,81,0 chrIV 1166743 . A G 689 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-1.312;QD=13.78;ReadPosRankSum=2.352;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:81:722,81,0 chrIV 1166751 . C T 612 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=14.23;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:645,69,0 chrIV 1166782 . A G 772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.079;DP=48;Dels=0.00;FS=6.702;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.395;QD=16.08;ReadPosRankSum=0.712;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:2,45:48:93:805,93,0 chrIV 1166844 . T C 1191 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.27;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1224,141,0 chrIV 1166875 . T C 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.762;QD=19.27;ReadPosRankSum=1.594;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:1016,114,0 chrIV 1166919 . T C 764 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.10;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:797,93,0 chrIV 1166921 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.65;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:859,96,0 chrIV 1166937 . T C 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.260;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.111;QD=18.62;ReadPosRankSum=1.659;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:908,102,0 chrIV 1167052 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.83;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1534,165,0 chrIV 1167232 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.91;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1188,132,0 chrIV 1167283 . T C 786 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=12.09;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:819,93,0 chrIV 1167451 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.33;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1437,159,0 chrIV 1167549 . A C 2138 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.27;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2171,249,0 chrIV 1167562 . C A 1991 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.94;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2024,228,0 chrIV 1167700 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.38;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1684,186,0 chrIV 1167712 . T C 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.617;QD=17.00;ReadPosRankSum=1.692;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1512,174,0 chrIV 1167790 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.41;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1870,207,0 chrIV 1167802 . G T 2087 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.69;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2120,234,0 chrIV 1167913 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.72;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1662,189,0 chrIV 1167961 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=2.930;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.548;QD=16.98;ReadPosRankSum=2.401;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1748,201,0 chrIV 1168261 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.44;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1324,147,0 chrIV 1168450 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0460;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.50;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1106,120,0 chrIV 1168958 . C A 1395 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.64;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1428,153,0 chrIV 1169118 . A G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.821;QD=19.42;ReadPosRankSum=1.641;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1509,171,0 chrIV 1169278 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.706;DP=79;Dels=0.00;FS=9.719;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.193;QD=19.61;ReadPosRankSum=2.834;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1582,177,0 chrIV 1169426 . T C 2073 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.53;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2106,246,0 chrIV 1169521 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3140;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.21;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1654,186,0 chrIV 1169720 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.85;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2305,261,0 chrIV 1169732 . C A 2193 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.69;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2226,240,0 chrIV 1170014 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.749;QD=19.82;ReadPosRankSum=1.685;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1500,174,0 chrIV 1170023 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.40;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1430,165,0 chrIV 1170281 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.22;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2211,249,0 chrIV 1170282 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.50;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2193,243,0 chrIV 1170302 . T C 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.175;QD=21.22;ReadPosRankSum=1.692;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1879,210,0 chrIV 1170425 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.48;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1456,165,0 chrIV 1170508 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.14;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2570,273,0 chrIV 1170698 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.3883;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.22;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2299,249,0 chrIV 1170836 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.9635;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.45;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2634,291,0 chrIV 1171148 . T C 2289 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.8208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.24;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2322,261,0 chrIV 1171222 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.16;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2271,258,0 chrIV 1171304 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.83;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2067,240,0 chrIV 1171409 . T C 1588 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2790;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=14.98;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1621,186,0 chrIV 1171430 . G C 1718 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.9529;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=14.81;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,111:116:99:1751,204,0 chrIV 1171598 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.92;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1886,210,0 chrIV 1171863 . T A 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.171;QD=21.90;ReadPosRankSum=1.683;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1610,177,0 chrIV 1171894 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.55;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1769,201,0 chrIV 1171993 . T G 1618 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=17.40;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1651,189,0 chrIV 1172008 . C T 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=0.550;QD=15.57;ReadPosRankSum=0.428;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1388,156,0 chrIV 1172018 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=15.60;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1328,147,0 chrIV 1172058 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=16.97;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1560,177,0 chrIV 1172141 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.565;QD=21.25;ReadPosRankSum=1.676;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1372,156,0 chrIV 1172228 . C T 1159 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.04;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1192,135,0 chrIV 1172277 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=16.97;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1747,192,0 chrIV 1172313 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.41;SB=-1.737e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3159,342,0 chrIV 1172497 . T C 2083 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.26;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2116,243,0 chrIV 1172576 . G C 1735 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.65;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1768,204,0 chrIV 1172599 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.22;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1711,198,0 chrIV 1172695 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.73;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2112,228,0 chrIV 1172698 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=13.747;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.175;QD=16.24;ReadPosRankSum=2.338;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:2,108:111:99:1836,213,0 chrIV 1172800 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.70;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1697,186,0 chrIV 1172802 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.60;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1687,183,0 chrIV 1172908 . T C 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=105;Dels=0.00;FS=6.146;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=-0.991;QD=15.70;ReadPosRankSum=2.683;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1681,192,0 chrIV 1172914 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.41;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1772,195,0 chrIV 1172929 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.78;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1879,210,0 chrIV 1173074 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.75;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2028,225,0 chrIV 1174038 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.65;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1722,186,0 chrIV 1174282 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.27;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2451,276,0 chrIV 1175004 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.42;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1113,123,0 chrIV 1175016 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=15.77;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1042,117,0 chrIV 1175150 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.50;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1083,123,0 chrIV 1175169 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=1;QD=17.47;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1483,165,0 chrIV 1175302 . C T 129.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=16.14;SB=-8.263e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:162,18,0 chrIV 1175310 . C T 102.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.93;MQ0=0;QD=17.04;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:135,15,0 chrIV 1175685 . C T 327 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=8.38;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:42:360,42,0 chrIV 1175692 . T A 328 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=9.37;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:42:361,42,0 chrIV 1175701 . G A 340 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=11.33;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:42:373,42,0 chrIV 1175709 . C T 331 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=11.82;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:42:364,42,0 chrIV 1175762 . C A 417 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=11.91;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:51:450,51,0 chrIV 1175763 . G C 400 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=11.43;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:51:433,51,0 chrIV 1175764 . T C 418 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=11.94;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:51:451,51,0 chrIV 1175766 . C A 414 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;QD=11.83;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:51:447,51,0 chrIV 1175772 . A G 418 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=9.72;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:51:451,51,0 chrIV 1175794 . T C 587 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=12.49;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:620,72,0 chrIV 1175944 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=20.25;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1248,141,0 chrIV 1176034 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=16.61;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1694,189,0 chrIV 1176041 . C A 1624 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=16.40;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1657,183,0 chrIV 1176102 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.21;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2627,285,0 chrIV 1176149 . T C 2464 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.81;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2497,291,0 chrIV 1176222 . A C 1834 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.82;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1867,213,0 chrIV 1176285 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.73;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1335,150,0 chrIV 1176468 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.40;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1855,201,0 chrIV 1176543 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.80;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1572,177,0 chrIV 1176633 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.83;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1357,153,0 chrIV 1176840 . A T 1355 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.36;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1388,153,0 chrIV 1176852 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.14;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1161,132,0 chrIV 1176974 . G A 801 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:834,90,0 chrIV 1177437 . A G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.593;QD=23.01;ReadPosRankSum=1.641;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1782,201,0 chrIV 1177557 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.42;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1054,117,0 chrIV 1177587 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.32;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1347,150,0 chrIV 1177590 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.45;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1306,147,0 chrIV 1177650 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.15;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:925,105,0 chrIV 1177720 . C T 1013 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.48;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1046,111,0 chrIV 1177776 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.26;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1285,144,0 chrIV 1178023 . A C 955 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.70;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:988,114,0 chrIV 1178080 . G T 1050 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.42;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1083,117,0 chrIV 1178089 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.20;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1070,117,0 chrIV 1178116 . G C 1149 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.24;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1182,135,0 chrIV 1178218 . C A 935 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.58;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:968,105,0 chrIV 1178230 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=13.15;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:822,93,0 chrIV 1178242 . A G 708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-0.720;QD=10.89;ReadPosRankSum=1.679;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:84:741,84,0 chrIV 1178243 . G A 731 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=11.42;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:84:764,84,0 chrIV 1178253 . C A 579 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=10.16;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:66:612,66,0 chrIV 1178302 . T A 815 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=13.81;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:848,93,0 chrIV 1178350 . C A 538 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=10.55;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:63:571,63,0 chrIV 1178539 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.21;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1128,123,0 chrIV 1178648 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.88;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1808,207,0 chrIV 1178899 . A C 862 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=14.61;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:895,102,0 chrIV 1178902 . A G 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.289;QD=14.67;ReadPosRankSum=1.675;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:913,99,0 chrIV 1178923 . T C 864 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=12.00;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:897,102,0 chrIV 1178966 . A C 992 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-0.902;QD=10.33;ReadPosRankSum=1.696;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1025,117,0 chrIV 1178968 . T C 985 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=10.48;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1018,117,0 chrIV 1178975 . C T 1102 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=10.70;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1135,120,0 chrIV 1178998 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=12.10;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1485,168,0 chrIV 1179154 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.71;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2190,243,0 chrIV 1179193 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.4655;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.64;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1540,174,0 chrIV 1179245 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.03;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1652,186,0 chrIV 1179478 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.32;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1772,201,0 chrIV 1179516 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=15.82;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1473,168,0 chrIV 1179642 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.47;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1241,138,0 chrIV 1179778 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.36;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1531,168,0 chrIV 1179847 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.11;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1428,165,0 chrIV 1179958 . T A 1653 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.61;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1686,186,0 chrIV 1180090 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.02;FS=3.906;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.617;QD=19.27;ReadPosRankSum=1.674;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1189,135,0 chrIV 1180093 . A G 1084 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=17.77;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:61:99:1117,129,0 chrIV 1180237 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.42;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1554,168,0 chrIV 1180738 . G A 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=73;Dels=0.00;FS=4.594;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.684;QD=21.44;ReadPosRankSum=1.684;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1598,155,0 chrIV 1181057 . A G 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.887;QD=19.42;ReadPosRankSum=2.364;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1140,132,0 chrIV 1181312 . G A 1004 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1037,114,0 chrIV 1181316 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:929,108,0 chrIV 1181427 . A T 846 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.23;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:879,96,0 chrIV 1181437 . C T 1015 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.6281;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.247;QD=20.30;ReadPosRankSum=0.208;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1048,114,0 chrIV 1181542 . G A 382 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=14.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:48:415,48,0 chrIV 1181555 . G C 392 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=13.52;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:48:425,48,0 chrIV 1181605 . G A 836 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.2802;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=15.20;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:93:869,93,0 chrIV 1181607 . G A 821 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.2802;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=15.20;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:93:854,93,0 chrIV 1181608 . G A 816 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.3644;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;MQRankSum=0.128;QD=15.11;ReadPosRankSum=1.412;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:93:849,93,0 chrIV 1181621 . A C 400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.797;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=13.8165;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.125;QD=6.25;ReadPosRankSum=4.469;SB=-5.100e+01 GT:AD:DP:GQ:PL 1/1:9,55:64:54:433,54,0 chrIV 1181622 . C A 337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=16.1713;MLEAC=1;MLEAF=0.500;MQ=40.95;MQ0=0;MQRankSum=-0.787;QD=5.11;ReadPosRankSum=3.984;SB=-6.002e+01 GT:AD:DP:GQ:PL 0/1:6,55:63:35:367,0,35 chrIV 1181703 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.69;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1576,180,0 chrIV 1182010 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=108;Dels=0.00;FS=12.500;HaplotypeScore=6.5229;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.411;QD=19.95;ReadPosRankSum=2.056;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2188,246,0 chrIV 1182055 . A G 2827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.472;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=1.430;QD=22.26;ReadPosRankSum=1.677;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2860,330,0 chrIV 1182082 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.91;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2772,321,0 chrIV 1182157 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2269,246,0 chrIV 1182317 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.67;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1919,207,0 chrIV 1182328 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.23;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1820,201,0 chrIV 1182359 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=16.62;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1678,192,0 chrIV 1182394 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=14.69;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1370,153,0 chrIV 1182406 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.472;QD=16.45;ReadPosRankSum=1.697;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1678,195,0 chrIV 1182448 . A G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.987;QD=16.90;ReadPosRankSum=1.700;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1841,210,0 chrIV 1182460 . A G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4894;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.275;QD=17.67;ReadPosRankSum=1.699;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1906,222,0 chrIV 1182715 . A C 1573 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.43;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1606,183,0 chrIV 1182755 . T C 1139 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.98;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1172,132,0 chrIV 1182860 . T C 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=10.765;HaplotypeScore=5.6522;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.040;QD=17.40;ReadPosRankSum=2.182;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1634,189,0 chrIV 1183017 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.97;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2109,234,0 chrIV 1183224 . G T 1674 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.93;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1707,186,0 chrIV 1183454 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=16.76;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1022,111,0 chrIV 1184039 . A T 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=80;Dels=0.00;FS=4.505;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.688;QD=20.54;ReadPosRankSum=1.688;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1676,189,0 chrIV 1184165 . T C 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.4292;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.667;QD=17.19;ReadPosRankSum=1.667;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:87:944,87,0 chrIV 1184340 . T C 2375 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.59;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2408,279,0 chrIV 1184427 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.89;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,204,0 chrIV 1184604 . T A 1315 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.34;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1348,150,0 chrIV 1184629 . A C 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=-1.347;QD=15.85;ReadPosRankSum=1.684;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1174,135,0 chrIV 1184630 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=16.58;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1210,135,0 chrIV 1184654 . A T 1408 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=16.00;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1441,165,0 chrIV 1184730 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.2204;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.10;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2274,249,0 chrIV 1184765 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=23.08;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1949,213,0 chrIV 1184776 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.46;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1713,192,0 chrIV 1184923 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.04;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2197,240,0 chrIV 1184947 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.78;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1675,186,0 chrIV 1185226 . C T 2098 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.43;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2131,240,0 chrIV 1185268 . T G 2109 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.17;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2142,249,0 chrIV 1185403 . A C 2010 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.72;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2043,234,0 chrIV 1185490 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=17.5092;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.962;QD=19.39;ReadPosRankSum=1.705;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2496,285,0 chrIV 1185562 . T C 2530 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5326;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.74;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2563,291,0 chrIV 1185649 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.969;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.912;QD=21.28;ReadPosRankSum=2.409;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2608,294,0 chrIV 1185927 . C T 3923.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.09;SB=-2.273e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:3923,435,0 chrIV 1186055 . C G 2383 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.06;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2416,264,0 chrIV 1186191 . A T 2784 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.58;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2817,306,0 chrIV 1186274 . G A 2777 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5983;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.87;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2810,300,0 chrIV 1186370 . T C 2261 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.69;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2294,252,0 chrIV 1186391 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=15.55;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1712,195,0 chrIV 1186610 . G A 2650 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.08;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2683,300,0 chrIV 1186629 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4297;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.84;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2450,279,0 chrIV 1186670 . C A 1781 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.12;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1814,198,0 chrIV 1186685 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.332;QD=16.40;ReadPosRankSum=1.695;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1575,183,0 chrIV 1186811 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.28;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1771,189,0 chrIV 1187337 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.34;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1335,153,0 chrIV 1187416 . T C 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=49;Dels=0.00;FS=8.374;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.379;QD=18.94;ReadPosRankSum=2.350;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:961,108,0 chrIV 1187649 . A G 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=0.050;QD=20.89;ReadPosRankSum=1.634;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:84:764,84,0 chrIV 1187661 . G A 609 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=16.03;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:642,72,0 chrIV 1187672 . T A 676 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.27;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:709,78,0 chrIV 1187718 . A G 682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=43;Dels=0.00;FS=4.191;HaplotypeScore=7.3735;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.908;QD=15.86;ReadPosRankSum=1.650;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:84:715,84,0 chrIV 1187870 . A G 674 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.07;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:81:707,81,0 chrIV 1187884 . C T 615 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.09;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:648,72,0 chrIV 1188228 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.93;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1678,189,0 chrIV 1188548 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.9891;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.53;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2691,294,0 chrIV 1188946 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.39;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1929,213,0 chrIV 1189283 . T C 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.335;QD=18.66;ReadPosRankSum=1.676;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1190,135,0 chrIV 1189463 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1465,165,0 chrIV 1189499 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1075,126,0 chrIV 1189643 . C A 901 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.48;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:934,102,0 chrIV 1189652 . T C 772 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.30;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:805,90,0 chrIV 1189996 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=14.53;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:658,75,0 chrIV 1190196 . T C 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.917;QD=24.53;ReadPosRankSum=1.631;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:96:867,96,0 chrIV 1190854 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.85;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1879,207,0 chrIV 1190973 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.41;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1043,120,0 chrIV 1191127 . T C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=5.159;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.972;QD=20.41;ReadPosRankSum=1.690;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1727,195,0 chrIV 1191177 . A G 1692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=83;Dels=0.00;FS=6.176;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.927;QD=20.39;ReadPosRankSum=2.791;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1725,198,0 chrIV 1191233 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1806,201,0 chrIV 1191616 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=16.50;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1089,120,0 chrIV 1191716 . G C 1129 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1162,132,0 chrIV 1191791 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.16;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1493,162,0 chrIV 1191917 . G A 447 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=12.77;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:480,54,0 chrIV 1191935 . G A 518 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=14.80;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:60:551,60,0 chrIV 1192314 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.71;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1764,186,0 chrIV 1192374 . G C 1184 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1151;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.07;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1217,141,0 chrIV 1192830 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=3.003;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.586;QD=20.52;ReadPosRankSum=2.402;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2147,246,0 chrIV 1193193 . C G 1886 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.05;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1919,213,0 chrIV 1193217 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.325;QD=19.16;ReadPosRankSum=1.371;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1892,216,0 chrIV 1193279 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.56;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1192,138,0 chrIV 1193452 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.01;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1734,195,0 chrIV 1193494 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.22;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2176,234,0 chrIV 1193527 . A T 2080 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.81;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2113,231,0 chrIV 1193552 . C G 1969 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.89;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2002,228,0 chrIV 1193659 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.93;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1485,171,0 chrIV 1193937 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.44;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1776,207,0 chrIV 1194088 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8959;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.76;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1922,219,0 chrIV 1194138 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.63;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2261,249,0 chrIV 1194207 . T A 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=120;Dels=0.00;FS=3.036;HaplotypeScore=7.9552;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.970;QD=21.89;ReadPosRankSum=2.387;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2660,288,0 chrIV 1194510 . T G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=3.358;HaplotypeScore=8.7735;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.992;QD=19.35;ReadPosRankSum=1.703;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2297,267,0 chrIV 1194645 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8924;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.32;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1938,225,0 chrIV 1194899 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.16;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1646,180,0 chrIV 1194976 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.64;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1483,159,0 chrIV 1195067 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.92;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1267,138,0 chrIV 1195400 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.39;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:951,105,0 chrIV 1195418 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.02;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:850,93,0 chrIV 1195577 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.25;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1390,162,0 chrIV 1195634 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.82;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1463,159,0 chrIV 1196311 . A T 1536 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.44;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1569,177,0 chrIV 1196388 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.97;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1329,153,0 chrIV 1196441 . G T 1164 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.28;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1197,132,0 chrIV 1196505 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.48;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:994,114,0 chrIV 1196516 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.51;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:926,105,0 chrIV 1196539 . T C 632 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=13.45;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:665,78,0 chrIV 1196547 . G A 565 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=12.02;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:598,63,0 chrIV 1196567 . G C 436 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=8.23;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:54:469,54,0 chrIV 1196570 . A T 442 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=8.04;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:475,51,0 chrIV 1196603 . T C 389 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=38.0142;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=7.07;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:48:422,48,0 chrIV 1196619 . A G 721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.720;HaplotypeScore=7.1594;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;MQRankSum=0.641;QD=9.74;ReadPosRankSum=1.685;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:87:754,87,0 chrIV 1196675 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.97;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1456,162,0 chrIV 1196892 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.53;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2016,228,0 chrIV 1196931 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.66;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2161,246,0 chrIV 1197080 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=81;Dels=0.00;FS=5.740;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.238;QD=17.90;ReadPosRankSum=2.838;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1483,165,0 chrIV 1197117 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.24;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1534,177,0 chrIV 1197291 . G A 2071 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.36;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2104,237,0 chrIV 1197900 . G C 1392 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.77;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1425,165,0 chrIV 1198335 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.22;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2186,246,0 chrIV 1198344 . A G 2118 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.58;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2151,249,0 chrIV 1198463 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.50;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2120,234,0 chrIV 1198548 . G C 1850 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.56;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1883,213,0 chrIV 1198969 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.78;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,201,0 chrIV 1199289 . A T 1861 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1894,207,0 chrIV 1199369 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.18;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1415,159,0 chrIV 1199588 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.21;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1339,153,0 chrIV 1199672 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1494,165,0 chrIV 1199944 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.98;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1058,117,0 chrIV 1200144 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=71;Dels=0.00;FS=10.616;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.243;QD=20.87;ReadPosRankSum=2.758;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1515,177,0 chrIV 1200337 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=3.399;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.089;QD=22.76;ReadPosRankSum=1.683;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1626,183,0 chrIV 1200582 . C T 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.1530;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.999;QD=21.88;ReadPosRankSum=-0.333;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1171,129,0 chrIV 1200630 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.95;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1210,138,0 chrIV 1200872 . T A 1321 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.0149;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.46;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1354,147,0 chrIV 1200988 . A T 2247 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.70;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2280,246,0 chrIV 1201144 . G T 1447 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.2562;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.55;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1480,168,0 chrIV 1201367 . G A 2843 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.21;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2876,327,0 chrIV 1201525 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.94;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2079,240,0 chrIV 1201527 . C A 2140 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.81;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2173,240,0 chrIV 1201621 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.37;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2426,270,0 chrIV 1201657 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.12;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2280,258,0 chrIV 1201701 . A T 2139 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.45;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2172,243,0 chrIV 1201736 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.16;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2534,273,0 chrIV 1201870 . A C 1377 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.86;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1410,162,0 chrIV 1202081 . A G 1772 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.61;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1805,201,0 chrIV 1202187 . A G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.3270;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.272;QD=20.28;ReadPosRankSum=0.320;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2142,230,0 chrIV 1202693 . A G 956 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.75;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:989,111,0 chrIV 1202749 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.07;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2477,273,0 chrIV 1202832 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.36;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2269,255,0 chrIV 1202939 . T C 1055 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.18;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1088,126,0 chrIV 1203473 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.06;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1781,204,0 chrIV 1203503 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.94;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1748,198,0 chrIV 1203594 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1932,216,0 chrIV 1203716 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1635,186,0 chrIV 1204166 . C T 2420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.938;HaplotypeScore=7.6379;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.599;QD=23.27;ReadPosRankSum=0.833;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2453,276,0 chrIV 1204399 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5956;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.580;QD=20.93;ReadPosRankSum=1.694;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1938,219,0 chrIV 1204426 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.42;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2132,240,0 chrIV 1204833 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1507,165,0 chrIV 1205529 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.65;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2764,297,0 chrIV 1205559 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.95;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2151,234,0 chrIV 1205574 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=15.68;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1726,198,0 chrIV 1205646 . G C 1913 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.71;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1946,222,0 chrIV 1205973 . A G 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8556;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.304;QD=18.25;ReadPosRankSum=1.689;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1511,174,0 chrIV 1206153 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.42;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1412,159,0 chrIV 1206306 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=18.73;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1419,162,0 chrIV 1206415 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.68;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1247,135,0 chrIV 1206699 . A T 573 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;MQRankSum=-2.879;QD=13.64;ReadPosRankSum=2.829;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,39:42:69:606,69,0 chrIV 1213263 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.29;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2001,219,0 chrIV 1213634 . G C 1535 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.32;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1568,180,0 chrIV 1213651 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.49;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1590,186,0 chrIV 1213652 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.92;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1686,183,0 chrIV 1213709 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.22;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1773,198,0 chrIV 1213821 . A T 1614 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.99;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1647,189,0 chrIV 1213825 . C A 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.540;QD=18.20;ReadPosRankSum=1.583;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1780,198,0 chrIV 1214004 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.78;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1688,189,0 chrIV 1214371 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.01;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1575,171,0 chrIV 1214533 . G A 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=4.157;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.263;QD=18.16;ReadPosRankSum=0.014;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2303,252,0 chrIV 1214538 . A G 2101 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.16;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2134,240,0 chrIV 1214545 . T C 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.136;QD=15.10;ReadPosRankSum=2.592;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:1936,225,0 chrIV 1214632 . C T 2637 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2670,294,0 chrIV 1214860 . T A 1721 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.87;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1754,192,0 chrIV 1214876 . C G 2162 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.58;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2195,249,0 chrIV 1215093 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1407,156,0 chrIV 1215179 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.60;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:907,105,0 chrIV 1215289 . T G 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.711;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.848;QD=20.26;ReadPosRankSum=1.695;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1958,222,0 chrIV 1215366 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.63;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1800,192,0 chrIV 1215541 . C T 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=62;Dels=0.00;FS=3.802;HaplotypeScore=6.0307;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.559;QD=20.71;ReadPosRankSum=1.675;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1317,144,0 chrIV 1215616 . T C 1112 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.841;DP=73;Dels=0.00;FS=1.713;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;MQRankSum=-0.207;QD=15.23;ReadPosRankSum=3.352;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:5,68:73:99:1145,108,0 chrIV 1215621 . T C 859 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.787;DP=67;Dels=0.00;FS=1.753;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;MQRankSum=2.229;QD=12.82;ReadPosRankSum=3.320;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:5,61:67:99:892,105,0 chrIV 1215622 . G T 880 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.096;DP=65;Dels=0.00;FS=1.724;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=0.332;QD=13.54;ReadPosRankSum=3.336;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:5,60:65:99:913,105,0 chrIV 1215670 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.10;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:999,111,0 chrIV 1215691 . C T 798 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.62;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:831,96,0 chrIV 1215707 . C A 815 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.40;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:848,93,0 chrIV 1215753 . A G 1068 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.80;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1101,126,0 chrIV 1215808 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1197,135,0 chrIV 1215859 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.74;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1044,120,0 chrIV 1215936 . T G 1105 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=17.82;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1138,129,0 chrIV 1215941 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.11;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1048,120,0 chrIV 1215994 . T C 1074 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=18.84;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1107,129,0 chrIV 1216099 . A T 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=6.435;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-1.653;QD=22.74;ReadPosRankSum=1.693;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2034,228,0 chrIV 1216309 . C G 1109 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.06;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1142,129,0 chrIV 1216313 . A G 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-1.462;QD=16.37;ReadPosRankSum=1.678;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1081,123,0 chrIV 1216405 . T C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=0.019;QD=14.26;ReadPosRankSum=1.694;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1331,147,0 chrIV 1216417 . A G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;MQRankSum=-1.509;QD=13.59;ReadPosRankSum=1.695;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1297,147,0 chrIV 1216425 . A G 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=105;Dels=0.00;FS=5.314;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;MQRankSum=-1.029;QD=13.16;ReadPosRankSum=3.222;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:4,101:105:99:1415,159,0 chrIV 1216429 . A G 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=2.759;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;MQRankSum=-0.179;QD=12.08;ReadPosRankSum=2.402;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1277,147,0 chrIV 1216449 . T C 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=7.132;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-1.554;QD=12.91;ReadPosRankSum=2.394;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1169,135,0 chrIV 1216848 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.46;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2146,231,0 chrIV 1217031 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.57;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1586,180,0 chrIV 1217085 . G T 1286 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.70;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1319,150,0 chrIV 1217086 . T A 1338 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.38;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1371,153,0 chrIV 1217139 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=85;Dels=0.00;FS=16.728;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.988;QD=14.81;ReadPosRankSum=2.917;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1292,147,0 chrIV 1217182 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3455;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.39;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1264,144,0 chrIV 1217208 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.44;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1361,147,0 chrIV 1217229 . T C 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=80;Dels=0.00;FS=4.771;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.533;QD=16.32;ReadPosRankSum=1.599;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1339,153,0 chrIV 1217501 . G C 1160 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.00;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1193,138,0 chrIV 1217791 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.04;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1314,153,0 chrIV 1217807 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.04;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1461,159,0 chrIV 1217923 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1200,135,0 chrIV 1218427 . T G 1211 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.33;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1244,147,0 chrIV 1218434 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=4.2297;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=16.52;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1388,159,0 chrIV 1218442 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=15.90;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1353,153,0 chrIV 1218445 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.11;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1354,153,0 chrIV 1219622 . C T 596 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:629,69,0 chrIV 1219965 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.10;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1480,168,0 chrIV 1220178 . A G 796 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.58;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:829,90,0 chrIV 1221065 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=9.0116;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.96;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2076,222,0 chrIV 1221460 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.95;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1688,186,0 chrIV 1221481 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.79;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1343,150,0 chrIV 1222049 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.54;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1362,156,0 chrIV 1222054 . G C 1359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.91;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1392,156,0 chrIV 1222135 . T C 917 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.63;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:950,108,0 chrIV 1222422 . T G 809 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.39;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:96:842,96,0 chrIV 1222653 . G T 1567 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8717;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.76;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1600,180,0 chrIV 1222965 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.86;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1284,144,0 chrIV 1223549 . A G 853 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:99:886,105,0 chrIV 1223807 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1075,120,0 chrIV 1223971 . C A 973 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1006,111,0 chrIV 1224090 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=2.714;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.206;QD=20.56;ReadPosRankSum=2.359;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1164,132,0 chrIV 1224118 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=4.111;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.284;QD=21.42;ReadPosRankSum=1.681;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1468,165,0 chrIV 1224332 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.41;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:51:438,51,0 chrIV 1224397 . T C 516 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=14.74;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:63:549,63,0 chrIV 1224490 . C T 1230 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1263,138,0 chrIV 1224501 . C T 1080 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1113,126,0 chrIV 1224509 . A G 1052 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1085,126,0 chrIV 1224626 . G C 1369 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1402,162,0 chrIV 1224684 . G A 900 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:99:933,102,0 chrIV 1224843 . G A 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.3848;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.636;QD=23.17;ReadPosRankSum=1.348;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:93:867,93,0 chrIV 1224954 . T C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=4.065;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.170;QD=20.58;ReadPosRankSum=1.664;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1103,126,0 chrIV 1225181 . A G 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=5.956;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.681;QD=20.70;ReadPosRankSum=1.681;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1420,162,0 chrIV 1225292 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=60;Dels=0.00;FS=7.214;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.524;QD=19.27;ReadPosRankSum=2.367;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,57:60:99:1189,138,0 chrIV 1225658 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.75;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1797,195,0 chrIV 1226468 . A C 1153 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.30;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1186,135,0 chrIV 1227316 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.60;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1372,147,0 chrIV 1227777 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.38;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1256,138,0 chrIV 1227802 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.01;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1240,138,0 chrIV 1227822 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.92;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1467,162,0 chrIV 1227904 . A G 1913 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.02;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1946,225,0 chrIV 1227967 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-1.469;QD=17.59;ReadPosRankSum=1.688;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1423,162,0 chrIV 1228063 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.40;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1522,174,0 chrIV 1228216 . G C 1076 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.55;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1109,126,0 chrIV 1228284 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.52;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1848,210,0 chrIV 1228290 . T C 1809 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.24;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1842,210,0 chrIV 1228404 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1610,177,0 chrIV 1228691 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1500,168,0 chrIV 1228721 . T C 1153 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.54;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1186,135,0 chrIV 1228793 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1438,156,0 chrIV 1229336 . A G 1203 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.87;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1236,141,0 chrIV 1229391 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.50;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1631,180,0 chrIV 1229404 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.93;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1684,183,0 chrIV 1229445 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.53;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1411,153,0 chrIV 1229808 . A G 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=4.210;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.577;QD=20.33;ReadPosRankSum=1.692;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1822,210,0 chrIV 1229833 . C T 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=5.229;HaplotypeScore=4.1372;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.232;QD=20.50;ReadPosRankSum=0.269;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1878,204,0 chrIV 1229881 . C G 1321 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.61;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1354,150,0 chrIV 1229935 . A C 1140 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.32;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1173,135,0 chrIV 1230065 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.00;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1852,207,0 chrIV 1230069 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=16.56;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1805,195,0 chrIV 1230646 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=87;Dels=0.00;FS=14.793;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.774;QD=21.29;ReadPosRankSum=2.917;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:3,82:87:99:1885,225,0 chrIV 1230859 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.89;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2394,270,0 chrIV 1231036 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.44;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2412,264,0 chrIV 1231118 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.19;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1338,150,0 chrIV 1231256 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.52;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1419,159,0 chrIV 1231627 . C A 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.2535;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.512;QD=19.26;ReadPosRankSum=0.907;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1304,144,0 chrIV 1231692 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.47;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2010,213,0 chrIV 1231763 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.75;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1257,141,0 chrIV 1231776 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.46;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1259,138,0 chrIV 1232017 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.94;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1788,192,0 chrIV 1232033 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1728;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.80;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1669,189,0 chrIV 1232341 . C T 2122 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.57;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2155,237,0 chrIV 1232436 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.76;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1861,213,0 chrIV 1232536 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1481,168,0 chrIV 1232659 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.36;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1870,204,0 chrIV 1232773 . C T 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.273;DP=116;Dels=0.00;FS=3.409;HaplotypeScore=5.7904;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.395;QD=21.08;ReadPosRankSum=0.820;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2478,255,0 chrIV 1233187 . G A 3211.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.62;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3245,351,0 chrIV 1233335 . C A 1225 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.69;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1258,135,0 chrIV 1233488 . T C 1564 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.05;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1597,177,0 chrIV 1233518 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.45;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1237,138,0 chrIV 1233588 . C G 1521 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.2294;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.33;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1554,174,0 chrIV 1233625 . A G 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;DP=96;Dels=0.00;FS=22.383;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=2.838;QD=0.52;ReadPosRankSum=4.045;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:6,88:96:47:80,0,47 chrIV 1233634 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.97;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1962,213,0 chrIV 1233840 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1388,153,0 chrIV 1233967 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=15.64;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1175,129,0 chrIV 1234313 . T C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.293;QD=21.21;ReadPosRankSum=2.327;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1751,198,0 chrIV 1234571 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7382;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.25;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1347,156,0 chrIV 1234644 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=15.01;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1249,135,0 chrIV 1235372 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.87;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1717,186,0 chrIV 1235429 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1763,195,0 chrIV 1235505 . A G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.127;QD=20.16;ReadPosRankSum=-0.467;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1303,147,0 chrIV 1235582 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.51;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1366,153,0 chrIV 1235594 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.27;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1221,138,0 chrIV 1235870 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.97;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,141,0 chrIV 1236152 . C G 1044 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.70;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1077,123,0 chrIV 1236154 . G T 1133 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.98;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1166,123,0 chrIV 1236219 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.81;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:977,108,0 chrIV 1236252 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.00;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:852,93,0 chrIV 1236276 . T C 475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=20.2967;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.800;QD=18.27;ReadPosRankSum=1.600;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:57:508,57,0 chrIV 1236463 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.69;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1372,147,0 chrIV 1237361 . T C 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.29;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1007,111,0 chrIV 1237375 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=17.05;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:766,84,0 chrIV 1237427 . A G 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-1.585;QD=17.23;ReadPosRankSum=1.585;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:96:843,96,0 chrIV 1237428 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.85;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:854,96,0 chrIV 1237448 . G A 797 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.60;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:830,90,0 chrIV 1237764 . C T 534 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.41;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,26:29:66:567,66,0 chrIV 1238041 . T A 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=56;Dels=0.00;FS=10.811;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.128;QD=18.43;ReadPosRankSum=2.802;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1065,120,0 chrIV 1238292 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.65;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1822,207,0 chrIV 1239430 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.001;QD=22.72;ReadPosRankSum=1.655;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2078,240,0 chrIV 1240919 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=12.28;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:81:745,81,0 chrIV 1241008 . C G 739 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=14.49;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:84:772,84,0 chrIV 1241019 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=13.39;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:87:756,87,0 chrIV 1241044 . G T 838 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.10;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:871,96,0 chrIV 1241429 . T A 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.276;QD=22.71;ReadPosRankSum=1.682;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1600,171,0 chrIV 1242063 . T C 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=6.247;HaplotypeScore=7.8529;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.487;QD=19.66;ReadPosRankSum=2.367;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1193,135,0 chrIV 1242168 . T C 801 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.80;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:834,96,0 chrIV 1242169 . A G 767 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=45;Dels=0.00;FS=3.547;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.524;QD=17.04;ReadPosRankSum=1.571;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:93:800,93,0 chrIV 1242178 . T A 942 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.04;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:975,108,0 chrIV 1242241 . T A 1396 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.9131;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.84;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1429,159,0 chrIV 1242743 . A C 1098 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.53;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1131,129,0 chrIV 1242744 . G T 1141 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.94;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1174,132,0 chrIV 1242924 . T C 261 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.31;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,15:16:33:294,33,0 chrIV 1243063 . A T 819 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.47;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:852,93,0 chrIV 1243676 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=17;QD=0.90;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,21:22:6:51,6,0 chrIV 1244360 . T C 176.03 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.28;MQ0=109;QD=1.40;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,126:126:24:209,24,0 chrIV 1244420 . C T 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.294;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=1;MLEAF=0.500;MQ=13.10;MQ0=76;MQRankSum=-0.440;QD=2.16;ReadPosRankSum=-0.486;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,71:136:99:324,0,180 chrIV 1245344 . C T 858.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=95;Dels=0.00;FS=41.521;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.30;MQ0=35;MQRankSum=-4.612;QD=9.03;ReadPosRankSum=-1.101;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:28,65:95:99:888,0,124 chrIV 1245374 . T C 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=74;Dels=0.00;FS=54.790;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=5.440;QD=1.86;ReadPosRankSum=-0.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,13:74:99:168,0,1057 chrIV 1245593 . T C 780 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=2;QD=21.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:93:813,93,0 chrIV 1245635 . C T 649 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=16;QD=11.19;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:75:682,75,0 chrIV 1245641 . A G 578 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=19;QD=9.63;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:69:611,69,0 chrIV 1246191 . A T 2476 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0893;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.81;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2509,288,0 chrIV 1246533 . T C 1724 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9574;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.28;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1757,201,0 chrIV 1246650 . T C 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=6.428;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.080;QD=17.35;ReadPosRankSum=2.258;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1369,153,0 chrIV 1246695 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.13;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1744,195,0 chrIV 1246923 . T C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=2.936;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.643;QD=23.71;ReadPosRankSum=2.367;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2855,315,0 chrIV 1247005 . C G 1871 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.27;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1904,216,0 chrIV 1247109 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.24;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1226,138,0 chrIV 1247244 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.24;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1790,210,0 chrIV 1247388 . T A 1737 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.09;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1770,198,0 chrIV 1247397 . A T 1850 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.68;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1883,204,0 chrIV 1247703 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.90;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2267,264,0 chrIV 1248083 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=14.36;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1182,129,0 chrIV 1248206 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.98;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1256,138,0 chrIV 1248319 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.93;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1271,144,0 chrIV 1248492 . T A 1444 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.06;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1477,162,0 chrIV 1248513 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4894;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.90;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:892,102,0 chrIV 1248818 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.62;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2088,225,0 chrIV 1248882 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.52;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1321,153,0 chrIV 1248993 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7998;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.19;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1361,147,0 chrIV 1249116 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=122;Dels=0.00;FS=5.872;HaplotypeScore=8.9279;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.642;QD=21.25;ReadPosRankSum=2.942;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:3,118:122:99:2626,303,0 chrIV 1249173 . G A 2724 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.62;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2757,300,0 chrIV 1249974 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.32;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1792,204,0 chrIV 1250091 . T C 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=78;Dels=0.00;FS=3.493;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.182;QD=16.23;ReadPosRankSum=1.687;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1299,147,0 chrIV 1250153 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.433;QD=22.09;ReadPosRankSum=1.689;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1822,207,0 chrIV 1250194 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=92;Dels=0.00;FS=2.869;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.690;QD=22.15;ReadPosRankSum=2.396;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2071,234,0 chrIV 1250522 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.20;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1964,222,0 chrIV 1250566 . A G 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.018;QD=20.93;ReadPosRankSum=1.696;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2021,231,0 chrIV 1250645 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.35;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1799,204,0 chrIV 1251694 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=106;Dels=0.00;FS=13.120;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.164;QD=17.10;ReadPosRankSum=2.933;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:1846,210,0 chrIV 1251752 . C T 3054 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.14;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3087,351,0 chrIV 1252027 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.40;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1825,195,0 chrIV 1252116 . A G 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.601;QD=16.87;ReadPosRankSum=1.697;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1720,198,0 chrIV 1252300 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=13.85;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:850,99,0 chrIV 1252307 . T C 862 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=14.61;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:895,105,0 chrIV 1252516 . T C 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=-0.360;QD=19.30;ReadPosRankSum=1.667;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1056,120,0 chrIV 1252563 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.84;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:87:809,87,0 chrIV 1252564 . T C 729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=48;Dels=0.00;FS=12.328;HaplotypeScore=3.7440;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.593;QD=15.19;ReadPosRankSum=2.348;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:87:762,87,0 chrIV 1252635 . T C 736 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=14.72;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:769,87,0 chrIV 1252677 . A C 1163 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.07;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1196,138,0 chrIV 1253172 . C A 1542 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.84;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1575,183,0 chrIV 1253205 . A G 1191 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.52;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:61:99:1224,138,0 chrIV 1253314 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.21;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2012,228,0 chrIV 1253334 . A G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.772;QD=20.18;ReadPosRankSum=1.690;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1728,198,0 chrIV 1253397 . T C 1747 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.41;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1780,201,0 chrIV 1253664 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.13;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1320,144,0 chrIV 1253679 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=16.08;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1062,120,0 chrIV 1253694 . T C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.314;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.021;QD=15.21;ReadPosRankSum=1.647;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1265,147,0 chrIV 1253763 . A G 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.879;QD=19.35;ReadPosRankSum=1.682;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1407,162,0 chrIV 1253787 . A G 1305 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.39;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1338,147,0 chrIV 1253876 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9164;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.23;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1687,186,0 chrIV 1253954 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.78;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2083,234,0 chrIV 1254312 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.51;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2238,240,0 chrIV 1254372 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.99;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1859,204,0 chrIV 1254465 . A G 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.397;QD=11.60;ReadPosRankSum=2.377;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:93:822,93,0 chrIV 1254508 . C T 177.03 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.4125;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=3.77;SB=-2.604e+01 GT:AD:DP:GQ:PL 1/1:0,45:47:24:210,24,0 chrIV 1254611 . A G 926 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.84;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:959,111,0 chrIV 1254620 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.97;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1136,129,0 chrIV 1254735 . G A 371 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.82;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:404,42,0 chrIV 1254750 . A G 232 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=12.89;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:30:265,30,0 chrIV 1254757 . A C 123.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=8.21;SB=-5.314e+01 GT:AD:DP:GQ:PL 1/1:0,13:15:18:156,18,0 chrIV 1254809 . G A 199.01 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=10.47;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,17:19:27:232,27,0 chrIV 1254831 . A G 548 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.83;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:66:581,66,0 chrIV 1254881 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.75;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:852,96,0 chrIV 1254929 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.8631;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.84;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1946,213,0 chrIV 1254967 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.10;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2217,240,0 chrIV 1255110 . T C 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.634;QD=18.83;ReadPosRankSum=1.648;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:93:824,93,0 chrIV 1255180 . A C 1359 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.99;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1392,162,0 chrIV 1255294 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.981;QD=17.73;ReadPosRankSum=1.690;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1540,177,0 chrIV 1255345 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.06;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1718,186,0 chrIV 1255417 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.84;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1860,195,0 chrIV 1255457 . A G 1707 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.32;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1740,198,0 chrIV 1255633 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.61;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1558,180,0 chrIV 1255666 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.01;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1516,174,0 chrIV 1255684 . T G 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.711;QD=18.01;ReadPosRankSum=1.643;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1456,159,0 chrIV 1255979 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3637;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.24;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1633,177,0 chrIV 1256137 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8056;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.29;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2588,297,0 chrIV 1256225 . C A 2480 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.96;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2513,288,0 chrIV 1256374 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.95;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1772,186,0 chrIV 1256476 . G A 2704 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.12;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2737,303,0 chrIV 1256575 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.51;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2743,294,0 chrIV 1256608 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.36;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1924,216,0 chrIV 1256650 . A G 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.237;QD=16.62;ReadPosRankSum=1.687;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1313,150,0 chrIV 1256788 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.15;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1429,153,0 chrIV 1256818 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.06;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1189,132,0 chrIV 1256876 . T A 1249 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.37;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1282,141,0 chrIV 1257111 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.06;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1170,135,0 chrIV 1257206 . A T 918 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=15.05;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:951,105,0 chrIV 1257209 . C T 928 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.03;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=15.21;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:961,105,0 chrIV 1257215 . T C 907 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=15.1085;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;MQRankSum=-1.732;QD=14.17;ReadPosRankSum=1.509;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:940,105,0 chrIV 1257281 . G T 1002 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=16.16;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1035,111,0 chrIV 1257340 . A G 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.932;DP=64;Dels=0.00;FS=2.639;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.378;QD=19.11;ReadPosRankSum=1.574;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1256,141,0 chrIV 1257343 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.05;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.19;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1325,147,0 chrIV 1257439 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=16.78;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1510,174,0 chrIV 1257442 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=17.05;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1499,168,0 chrIV 1257451 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=16.25;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1463,165,0 chrIV 1257459 . A C 1343 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=15.62;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1376,153,0 chrIV 1257873 . T C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.704;HaplotypeScore=6.6426;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=-0.421;QD=16.43;ReadPosRankSum=2.013;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1331,153,0 chrIV 1257874 . C T 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.682;HaplotypeScore=6.6426;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.139;QD=16.57;ReadPosRankSum=2.111;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1359,153,0 chrIV 1257945 . A C 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=66;Dels=0.00;FS=2.739;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.058;QD=20.97;ReadPosRankSum=2.373;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:2,62:66:99:1417,156,0 chrIV 1258096 . T A 1556 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.48;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1589,177,0 chrIV 1258335 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.06;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1855,210,0 chrIV 1258657 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.2923;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.76;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2274,261,0 chrIV 1258685 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.17;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2161,246,0 chrIV 1258758 . T C 2207 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2240,252,0 chrIV 1258923 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=17.48;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1938,219,0 chrIV 1258941 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=18.73;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2206,240,0 chrIV 1258968 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.01;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2014,228,0 chrIV 1259604 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.71;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1586,168,0 chrIV 1259896 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.63;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1720,192,0 chrIV 1259960 . A T 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.000;QD=18.12;ReadPosRankSum=1.673;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1084,120,0 chrIV 1259970 . G C 946 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=16.89;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:979,111,0 chrIV 1259982 . A G 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.247;QD=15.35;ReadPosRankSum=1.622;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1031,120,0 chrIV 1260022 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.26;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1071,114,0 chrIV 1260032 . T G 852 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=13.52;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:885,102,0 chrIV 1260055 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=15.88;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1256,147,0 chrIV 1260078 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.28;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1156,126,0 chrIV 1260837 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.77;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1902,210,0 chrIV 1260996 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.86;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1541,168,0 chrIV 1261009 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.00;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1333,150,0 chrIV 1261060 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.25;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:894,102,0 chrIV 1261089 . A G 963 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.83;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:996,111,0 chrIV 1261102 . A C 855 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.44;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:888,102,0 chrIV 1261151 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.30;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1140,129,0 chrIV 1261386 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.43;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1334,153,0 chrIV 1261418 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.08;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1490,168,0 chrIV 1261452 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.52;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1575,180,0 chrIV 1262181 . T A 2147 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2180,243,0 chrIV 1262394 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.084;DP=102;Dels=0.00;FS=6.238;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.591;QD=20.18;ReadPosRankSum=1.677;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2091,220,0 chrIV 1262787 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.1303;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.01;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1834,207,0 chrIV 1263265 . T G 1692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.098;QD=20.39;ReadPosRankSum=1.605;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1725,189,0 chrIV 1264122 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.02;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1252,138,0 chrIV 1264265 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.59;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2070,228,0 chrIV 1264283 . T C 1782 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.16;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1815,204,0 chrIV 1264448 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.46;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1551,171,0 chrIV 1264454 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.84;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1484,165,0 chrIV 1264588 . A T 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.584;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.412;QD=23.43;ReadPosRankSum=1.666;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2493,267,0 chrIV 1264751 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.96;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1531,171,0 chrIV 1264874 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=123;Dels=0.00;FS=5.605;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.008;QD=20.48;ReadPosRankSum=2.910;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2552,288,0 chrIV 1264886 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=116;Dels=0.00;FS=2.845;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.459;QD=16.88;ReadPosRankSum=2.293;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:2,108:116:99:1991,228,0 chrIV 1264892 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.12;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1990,222,0 chrIV 1264956 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=18.98;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1988,228,0 chrIV 1265205 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.79;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2195,237,0 chrIV 1265705 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.506;QD=19.39;ReadPosRankSum=1.679;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1332,159,0 chrIV 1266546 . T C 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.056;QD=17.26;ReadPosRankSum=1.658;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1638,186,0 chrIV 1266570 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.49;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1670,198,0 chrIV 1266696 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.82;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1352,150,0 chrIV 1266952 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.36;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1499,171,0 chrIV 1267101 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.89;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:948,102,0 chrIV 1267248 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.44;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1239,141,0 chrIV 1267414 . A G 2572 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.17;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2605,300,0 chrIV 1267740 . A G 2568 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.71;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2601,300,0 chrIV 1267950 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.000;QD=20.75;ReadPosRankSum=1.683;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1548,177,0 chrIV 1267989 . A T 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=7.322;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.022;QD=22.61;ReadPosRankSum=2.353;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1751,192,0 chrIV 1268154 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.907;QD=22.24;ReadPosRankSum=1.677;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1434,165,0 chrIV 1268315 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.61;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1661,186,0 chrIV 1268647 . C A 1769 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.23;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1802,192,0 chrIV 1269015 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=99;Dels=0.00;FS=3.053;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.138;QD=19.24;ReadPosRankSum=2.299;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1938,222,0 chrIV 1269345 . A G 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.499;QD=18.78;ReadPosRankSum=1.674;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1141,132,0 chrIV 1269577 . C T 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=29;Dels=0.00;FS=2.741;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;MQRankSum=1.334;QD=19.52;ReadPosRankSum=2.281;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:2,27:29:66:599,66,0 chrIV 1269708 . A C 623 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.54;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:75:656,75,0 chrIV 1270259 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.235;DP=65;Dels=0.00;FS=2.622;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.422;QD=18.15;ReadPosRankSum=1.923;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1213,122,0 chrIV 1270902 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2167,249,0 chrIV 1271055 . A C 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=156;Dels=0.00;FS=2.584;HaplotypeScore=10.8350;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.588;QD=21.29;ReadPosRankSum=2.915;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:3321,372,0 chrIV 1271410 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.50;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2097,228,0 chrIV 1271755 . G C 1097 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.14;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1130,132,0 chrIV 1271788 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.65;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:891,96,0 chrIV 1271999 . A G 798 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:831,96,0 chrIV 1272164 . G A 745 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=20.14;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:778,84,0 chrIV 1273219 . A T 1133 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1166,129,0 chrIV 1273337 . A G 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.468;QD=19.78;ReadPosRankSum=1.639;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1497,168,0 chrIV 1273367 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3594;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.87;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1516,168,0 chrIV 1274867 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1018,114,0 chrIV 1274988 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.74;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1236,135,0 chrIV 1275068 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.88;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:945,111,0 chrIV 1275069 . A G 941 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.10;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:974,111,0 chrIV 1275195 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.54;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1101,129,0 chrIV 1275498 . T C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=53;Dels=0.00;FS=6.621;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.117;QD=18.47;ReadPosRankSum=2.264;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1012,114,0 chrIV 1275612 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.37;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1253,141,0 chrIV 1276056 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.455;QD=21.75;ReadPosRankSum=1.640;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1664,192,0 chrIV 1276125 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.89;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1452,159,0 chrIV 1276254 . A T 1731 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.78;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1764,189,0 chrIV 1276306 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.77;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1490,162,0 chrIV 1276315 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.98;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1813,198,0 chrIV 1276389 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.04;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1837,201,0 chrIV 1276486 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.438;QD=21.47;ReadPosRankSum=1.694;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1987,228,0 chrIV 1276608 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.06;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2107,243,0 chrIV 1276759 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.62;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2301,261,0 chrIV 1276963 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.01;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1474,159,0 chrIV 1277231 . C A 1902 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.37;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1935,210,0 chrIV 1277282 . G T 1671 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.89;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1704,186,0 chrIV 1277377 . A T 1314 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.53;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1347,147,0 chrIV 1277471 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.28;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1331,147,0 chrIV 1277861 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.72;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1343,147,0 chrIV 1278468 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=15.34;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:938,108,0 chrIV 1278481 . C G 1075 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=16.29;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1108,129,0 chrIV 1278613 . A C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=112;Dels=0.00;FS=11.472;HaplotypeScore=9.6375;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-2.117;QD=21.56;ReadPosRankSum=2.405;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2448,285,0 chrIV 1279037 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.03;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2241,255,0 chrIV 1279148 . A G 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=122;Dels=0.00;FS=2.594;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.229;QD=19.05;ReadPosRankSum=2.941;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,116:122:99:2357,270,0 chrIV 1279347 . T C 891 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.37;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:924,108,0 chrIV 1279422 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.04;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1569,183,0 chrIV 1279680 . A C 1784 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.27;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1817,207,0 chrIV 1279875 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.17;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1762,186,0 chrIV 1280061 . T G 1942 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.67;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1975,228,0 chrIV 1280121 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2289,249,0 chrIV 1280535 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.7121;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.06;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1678,192,0 chrIV 1280606 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.87;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:64:99:1433,153,0 chrIV 1280622 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.40;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1298,144,0 chrIV 1281204 . C T 2957 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2990,321,0 chrIV 1281471 . A T 1390 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.31;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1423,156,0 chrIV 1281774 . A G 1604 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1637,189,0 chrIV 1281813 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1504,162,0 chrIV 1281900 . A C 1419 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1452,168,0 chrIV 1281969 . G T 1315 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1348,150,0 chrIV 1282243 . C A 1286 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.80;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1319,144,0 chrIV 1282320 . T C 1116 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1149,132,0 chrIV 1282579 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=4.938;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.425;QD=22.57;ReadPosRankSum=1.667;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1252,144,0 chrIV 1283387 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=3.729;HaplotypeScore=11.5281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.644;QD=19.30;ReadPosRankSum=1.703;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2349,270,0 chrIV 1283592 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.80;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:898,99,0 chrIV 1283766 . G T 1140 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.39;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1173,138,0 chrIV 1283911 . C A 512 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.96;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:60:545,60,0 chrIV 1283930 . C A 612 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.10;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:645,69,0 chrIV 1284111 . T A 843 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:876,102,0 chrIV 1284927 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.48;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1515,165,0 chrIV 1285035 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.32;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1740,195,0 chrIV 1285139 . A C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.195;QD=21.69;ReadPosRankSum=1.683;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1595,183,0 chrIV 1285752 . A T 1810 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.21;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1843,204,0 chrIV 1285878 . T C 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=58;Dels=0.00;FS=2.737;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.700;QD=20.33;ReadPosRankSum=2.185;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:2,54:58:99:1212,138,0 chrIV 1286166 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1668,177,0 chrIV 1286229 . G T 1878 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.84;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1911,207,0 chrIV 1286562 . C A 1637 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.06;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1670,183,0 chrIV 1286766 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1795,207,0 chrIV 1286949 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1229,141,0 chrIV 1287125 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.49;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2001,225,0 chrIV 1287842 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=102;Dels=0.00;FS=8.798;HaplotypeScore=7.7769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.378;QD=17.77;ReadPosRankSum=2.328;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1846,213,0 chrIV 1288071 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.53;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1851,216,0 chrIV 1288090 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=15.31;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1855,210,0 chrIV 1288413 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.49;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1816,201,0 chrIV 1288551 . G C 2242 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9747;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.95;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2275,258,0 chrIV 1288861 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.74;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1382,150,0 chrIV 1289195 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.31;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1272,135,0 chrIV 1289885 . T A 1189 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.23;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1222,132,0 chrIV 1289939 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.45;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1177,132,0 chrIV 1289972 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.22;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1635,177,0 chrIV 1290044 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.44;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1245,141,0 chrIV 1290308 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.73;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1505,168,0 chrIV 1290722 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.42;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1254,138,0 chrIV 1291009 . A G 221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=3.310;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.504;QD=14.73;ReadPosRankSum=-0.347;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,14:15:30:254,30,0 chrIV 1291177 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.35;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:93:860,93,0 chrIV 1291207 . T C 917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.871;QD=19.51;ReadPosRankSum=2.345;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:2,45:47:99:950,111,0 chrIV 1291642 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.57;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2069,228,0 chrIV 1291654 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.026;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.062;QD=17.11;ReadPosRankSum=2.376;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1761,204,0 chrIV 1291676 . C T 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.173;QD=16.53;ReadPosRankSum=1.658;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1570,174,0 chrIV 1291788 . C G 1618 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.57;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1651,189,0 chrIV 1291853 . C A 1894 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.59;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1927,210,0 chrIV 1291869 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.81;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1578,177,0 chrIV 1292120 . A G 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.019;QD=20.44;ReadPosRankSum=1.695;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1934,219,0 chrIV 1292138 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9363;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.56;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1499,162,0 chrIV 1292153 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.97;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1571,171,0 chrIV 1292515 . G C 1334 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1367,156,0 chrIV 1292666 . A G 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.800;QD=19.67;ReadPosRankSum=1.666;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1056,123,0 chrIV 1293201 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.421;QD=21.08;ReadPosRankSum=1.693;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1909,219,0 chrIV 1293287 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.61;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2076,246,0 chrIV 1293368 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=15.9783;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1904,216,0 chrIV 1293471 . T C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.913;QD=18.40;ReadPosRankSum=1.606;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1045,114,0 chrIV 1293522 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=14.40;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1070,120,0 chrIV 1293527 . G T 970 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=12.60;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1003,108,0 chrIV 1293602 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.30;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1819,201,0 chrIV 1293708 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1546,174,0 chrIV 1293777 . A C 2118 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.76;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2151,246,0 chrIV 1293998 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.39;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1824,195,0 chrIV 1294207 . T C 2105 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9402;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.49;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2138,249,0 chrIV 1294462 . T G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=69;Dels=0.00;FS=3.060;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.309;QD=20.48;ReadPosRankSum=2.305;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1446,147,0 chrIV 1294559 . T A 1519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.73;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1552,168,0 chrIV 1294560 . T A 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=5.497;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.355;QD=19.50;ReadPosRankSum=1.688;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1554,171,0 chrIV 1295031 . T A 1432 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.46;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1465,159,0 chrIV 1295100 . A G 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.261;QD=14.41;ReadPosRankSum=1.685;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1099,126,0 chrIV 1295106 . T C 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=6.669;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.201;QD=13.99;ReadPosRankSum=2.386;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1110,126,0 chrIV 1295451 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0347;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=14.57;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:922,105,0 chrIV 1295582 . T G 1750 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.11;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1783,201,0 chrIV 1295980 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.55;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1606,174,0 chrIV 1296035 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.02;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1547,168,0 chrIV 1296045 . T A 1462 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1495,162,0 chrIV 1296225 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.72;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1640,177,0 chrIV 1296388 . A T 656 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.29;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:689,75,0 chrIV 1296732 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=3.11;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:53,6,0 chrIV 1296755 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=2.72;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrIV 1296826 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.07;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1161,123,0 chrIV 1297076 . T C 1006 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7074;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.63;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1039,114,0 chrIV 1297127 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.76;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1092,123,0 chrIV 1297547 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=16.81;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1395,159,0 chrIV 1297562 . G C 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.78;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,195,0 chrIV 1297645 . T C 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=85;Dels=0.00;FS=3.561;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.526;QD=16.95;ReadPosRankSum=1.691;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1474,171,0 chrIV 1297796 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.12;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1482,171,0 chrIV 1297890 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.65;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1972,216,0 chrIV 1298054 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.22;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1513,162,0 chrIV 1298093 . A G 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.962;QD=17.54;ReadPosRankSum=1.689;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1471,168,0 chrIV 1298162 . A C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.217;QD=20.07;ReadPosRankSum=1.639;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1518,171,0 chrIV 1298210 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=76;Dels=0.00;FS=9.087;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.338;QD=16.20;ReadPosRankSum=3.338;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1264,144,0 chrIV 1298219 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=14.84;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1250,144,0 chrIV 1298337 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.55;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1472,165,0 chrIV 1298375 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4052;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.79;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1421,153,0 chrIV 1298389 . A G 1394 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=17.00;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1427,162,0 chrIV 1298424 . T A 1285 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=16.91;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1318,141,0 chrIV 1298433 . T C 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-1.444;QD=14.26;ReadPosRankSum=1.636;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1060,123,0 chrIV 1298594 . A C 2406 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.29;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2439,279,0 chrIV 1298614 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.680;QD=19.83;ReadPosRankSum=1.639;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2254,261,0 chrIV 1298688 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.63;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1889,210,0 chrIV 1298829 . C A 2062 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.83;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2095,225,0 chrIV 1298872 . T G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.190;QD=19.69;ReadPosRankSum=0.063;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1667,192,0 chrIV 1298950 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.67;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1769,201,0 chrIV 1298958 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.80;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1593,177,0 chrIV 1299032 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.99;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1492,168,0 chrIV 1299052 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.64;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1338,156,0 chrIV 1299086 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.70;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1589,180,0 chrIV 1299137 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.86;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1577,180,0 chrIV 1299214 . A G 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.477;QD=21.47;ReadPosRankSum=1.681;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1493,171,0 chrIV 1299506 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5481;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.29;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1504,162,0 chrIV 1299533 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.2159;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.63;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1850,213,0 chrIV 1299598 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.65;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1913,213,0 chrIV 1300045 . A C 2046 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.48;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2079,234,0 chrIV 1300146 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.846;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.171;QD=21.31;ReadPosRankSum=2.374;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1418,165,0 chrIV 1300226 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.35;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1866,213,0 chrIV 1300388 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.01;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2218,252,0 chrIV 1300582 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1469,159,0 chrIV 1300834 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7106;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2502,288,0 chrIV 1300956 . C A 1691 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.88;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1724,186,0 chrIV 1301095 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.9458;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.69;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2288,255,0 chrIV 1301230 . A G 2954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.611;QD=20.66;ReadPosRankSum=1.684;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2987,339,0 chrIV 1301390 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=15.42;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1220,138,0 chrIV 1301405 . A C 1234 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=15.62;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1267,144,0 chrIV 1301474 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.88;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1732,192,0 chrIV 1302363 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1397,153,0 chrIV 1302530 . T C 1671 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.15;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1704,195,0 chrIV 1302683 . T G 1394 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.50;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1427,162,0 chrIV 1302786 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.80;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1319,147,0 chrIV 1302813 . T C 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.064;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.213;QD=22.12;ReadPosRankSum=1.672;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1294,128,0 chrIV 1302868 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.44;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1362,153,0 chrIV 1302908 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.46;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1557,180,0 chrIV 1302932 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.84;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1402,159,0 chrIV 1303036 . A G 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=4.063;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.294;QD=21.25;ReadPosRankSum=1.644;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1754,204,0 chrIV 1303188 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.49;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1612,180,0 chrIV 1303572 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.19;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1786,192,0 chrIV 1304226 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1914,207,0 chrIV 1304580 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.43;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1814,195,0 chrIV 1304682 . T C 1731 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.37;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1764,201,0 chrIV 1304837 . A G 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.550;QD=20.68;ReadPosRankSum=1.641;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:93:819,93,0 chrIV 1304961 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.51;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1301,147,0 chrIV 1304979 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.41;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1217,132,0 chrIV 1305443 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1327,153,0 chrIV 1305496 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1452,168,0 chrIV 1305752 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=18.44;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1176,132,0 chrIV 1306195 . T G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=2.632;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.951;QD=20.46;ReadPosRankSum=2.885;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:1281,147,0 chrIV 1306367 . A C 2158 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6832;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.80;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2191,255,0 chrIV 1306509 . G T 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.9119;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=19.97;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1551,171,0 chrIV 1306661 . A C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=19.59;ReadPosRankSum=1.655;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1835,207,0 chrIV 1306673 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=17.22;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1738,195,0 chrIV 1306734 . G T 1753 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.5142;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=15.24;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1786,198,0 chrIV 1306774 . T A 1595 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7254;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=14.50;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1628,183,0 chrIV 1306792 . A T 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.304;QD=16.53;ReadPosRankSum=1.671;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1917,207,0 chrIV 1306911 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.40;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1546,168,0 chrIV 1306938 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.309;QD=18.30;ReadPosRankSum=1.694;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1698,192,0 chrIV 1306979 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.26;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1649,186,0 chrIV 1307338 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=21.21;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1730,189,0 chrIV 1307489 . A G 2726 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=20.97;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2759,321,0 chrIV 1307587 . G A 3640.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=21.04;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:3640,408,0 chrIV 1307631 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=33.1651;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=15.20;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1979,222,0 chrIV 1307633 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.141;DP=126;Dels=0.00;FS=29.537;HaplotypeScore=33.1651;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=-0.667;QD=12.39;ReadPosRankSum=6.184;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:29,97:126:72:1594,72,0 chrIV 1307646 . G A 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;DP=152;Dels=0.00;FS=43.205;HaplotypeScore=6.2000;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=0;MQRankSum=-0.807;QD=0.63;ReadPosRankSum=0.228;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,37:152:99:126,0,1455 chrIV 1307667 . G T 2312.33 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=19.3079;MLEAC=1;MLEAF=0.500;MQ=41.92;MQ0=0;QD=11.86;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,173:195:99:2345,264,0 chrIV 1307715 . C T 4102.01 filter AC=2;AF=1.00;AN=2;DP=264;Dels=0.00;FS=0.000;HaplotypeScore=10.8307;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=5;QD=15.54;SB=-3.088e+03 GT:AD:DP:GQ:PL 1/1:0,264:264:99:4102,453,0 chrIV 1307762 . C T 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=184;Dels=0.00;FS=3.702;HaplotypeScore=19.9775;MLEAC=1;MLEAF=0.500;MQ=34.59;MQ0=16;MQRankSum=3.391;QD=1.19;ReadPosRankSum=-3.704;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:136,46:184:99:249,0,1038 chrIV 1307793 . G T 242.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.119;DP=91;Dels=0.00;FS=18.191;HaplotypeScore=5.2780;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=14;MQRankSum=2.354;QD=2.66;ReadPosRankSum=-3.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,29:91:99:272,0,270 chrIV 1307796 . A T 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;DP=80;Dels=0.00;FS=13.393;HaplotypeScore=3.7006;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=13;MQRankSum=3.570;QD=2.10;ReadPosRankSum=-3.556;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,23:80:99:198,0,278 chrIV 1307797 . C T 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.441;DP=78;Dels=0.00;FS=13.112;HaplotypeScore=4.4893;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=12;MQRankSum=2.061;QD=2.33;ReadPosRankSum=-4.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,22:78:99:212,0,245 chrIV 1307804 . C T 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;DP=69;Dels=0.00;FS=10.783;HaplotypeScore=7.8218;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=11;MQRankSum=1.359;QD=2.01;ReadPosRankSum=-5.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,19:69:99:169,0,305 chrIV 1307835 . G T 110.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=3;MQRankSum=-1.156;QD=5.02;ReadPosRankSum=-1.156;SB=-5.426e+01 GT:AD:DP:GQ:PL 0/1:1,20:22:6:140,0,6 chrIV 1307848 . A G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.5144;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=3;MQRankSum=0.380;QD=3.31;ReadPosRankSum=-1.788;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:11,5:16:37:83,0,37 chrIV 1307856 . A G 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;DP=21;Dels=0.00;FS=7.375;HaplotypeScore=5.1835;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=3;MQRankSum=1.377;QD=4.24;ReadPosRankSum=-2.443;SB=-6.574e-03 GT:AD:DP:GQ:PL 0/1:11,10:21:46:119,0,46 chrIV 1307860 . T C 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;DP=30;Dels=0.00;FS=8.081;HaplotypeScore=7.4095;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=3;MQRankSum=-0.858;QD=0.73;ReadPosRankSum=2.739;SB=-1.425e+01 GT:AD:DP:GQ:PL 0/1:23,7:30:52:52,0,210 chrIV 1307874 . A T 165.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;DP=59;Dels=0.00;FS=6.295;HaplotypeScore=34.9827;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=7;MQRankSum=0.970;QD=2.80;ReadPosRankSum=-0.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,25:59:99:195,0,112 chrIV 1307877 . G A 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;DP=63;Dels=0.00;FS=11.822;HaplotypeScore=34.9827;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=9;MQRankSum=0.262;QD=3.38;ReadPosRankSum=-0.063;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,35:63:97:243,0,97 chrIV 1307885 . T C 210.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.446;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=29.7236;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=10;MQRankSum=-1.479;QD=2.23;ReadPosRankSum=3.774;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:59,35:94:99:240,0,283 chrIV 1307930 . C T 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.555;DP=182;Dels=0.00;FS=4.651;HaplotypeScore=223.6951;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=27;MQRankSum=-3.561;QD=0.23;ReadPosRankSum=3.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,46:182:71:71,0,767 chrIV 1307944 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=173;Dels=0.00;FS=9.809;HaplotypeScore=134.0467;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=29;MQRankSum=-3.444;QD=0.08;ReadPosRankSum=6.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,47:173:43:43,0,688 chrIV 1307956 . C T 231.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=164;Dels=0.00;FS=4.646;HaplotypeScore=149.6699;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=29;MQRankSum=0.736;QD=1.41;ReadPosRankSum=1.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,31:164:99:261,0,543 chrIV 1307961 . G T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=151.7728;MLEAC=1;MLEAF=0.500;MQ=25.82;MQ0=25;MQRankSum=2.402;QD=0.37;ReadPosRankSum=-5.331;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:111,29:153:87:87,0,702 chrIV 1307964 . A T 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=140.5872;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=25;MQRankSum=3.187;QD=0.83;ReadPosRankSum=-5.065;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:112,31:146:99:151,0,658 chrIV 1307965 . C T 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.616;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=142.1646;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=25;MQRankSum=2.063;QD=0.48;ReadPosRankSum=-3.713;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:126,21:147:99:100,0,736 chrIV 1307968 . G A 312.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.699;DP=149;Dels=0.00;FS=7.529;HaplotypeScore=135.1808;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=25;MQRankSum=3.543;QD=2.09;ReadPosRankSum=3.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,44:149:99:342,0,457 chrIV 1308003 . A T 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=58;Dels=0.00;FS=14.385;HaplotypeScore=35.7942;MLEAC=1;MLEAF=0.500;MQ=29.57;MQ0=4;MQRankSum=-0.532;QD=0.20;ReadPosRankSum=-0.818;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:37,7:58:41:41,0,182 chrIV 1308006 . A T 65.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=29.9167;MLEAC=1;MLEAF=0.500;MQ=30.24;MQ0=3;MQRankSum=0.952;QD=1.30;ReadPosRankSum=-3.315;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:30,20:50:95:95,0,185 chrIV 1308010 . G A 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;DP=47;Dels=0.00;FS=9.645;HaplotypeScore=27.3477;MLEAC=1;MLEAF=0.500;MQ=30.09;MQ0=2;MQRankSum=1.487;QD=1.94;ReadPosRankSum=4.189;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,23:47:99:121,0,113 chrIV 1308016 . A G 137.06 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=6.53;SB=-2.207e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:21:170,21,0 chrIV 1308024 . A G 76.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=1;QD=5.10;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:109,12,0 chrIV 1308027 . G A 68.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=1;QD=4.57;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:101,12,0 chrIV 1308053 . T C 74.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;DP=20;Dels=0.00;FS=18.195;HaplotypeScore=5.8404;MLEAC=1;MLEAF=0.500;MQ=15.68;MQ0=8;MQRankSum=1.977;QD=3.74;ReadPosRankSum=-2.793;SB=-3.539e+00 GT:AD:DP:GQ:PL 0/1:10,10:20:4:104,0,4 chrIV 1308135 . C T 77.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=9.3192;MLEAC=2;MLEAF=1.00;MQ=17.27;MQ0=3;QD=7.73;SB=-4.276e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:110,15,0 chrIV 1308184 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.6247;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=1;MQRankSum=0.736;QD=1.72;ReadPosRankSum=0.736;SB=-4.380e+01 GT:AD:DP:GQ:PL 1/1:2,5:7:6:43,6,0 chrIV 1308276 . A G 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.550;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.2005;MLEAC=2;MLEAF=1.00;MQ=17.27;MQ0=13;MQRankSum=3.712;QD=1.76;ReadPosRankSum=0.032;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:27,9:36:12:96,12,0 chrIV 1308294 . A T 157.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=42;Dels=0.00;FS=3.163;HaplotypeScore=11.2215;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=7;MQRankSum=2.248;QD=3.74;ReadPosRankSum=3.557;SB=0.886 GT:AD:DP:GQ:PL 1/1:26,16:42:5:188,5,0 chrIV 1308299 . T C 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=40;Dels=0.00;FS=3.757;HaplotypeScore=8.9778;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=2;MQRankSum=3.592;QD=3.18;ReadPosRankSum=4.095;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,18:40:99:157,0,152 chrIV 1308303 . C T 390 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=3;QD=9.51;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:48:423,48,0 chrIV 1308305 . T C 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.268;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=4;MQRankSum=4.183;QD=2.86;ReadPosRankSum=4.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,20:43:99:153,0,197 chrIV 1308350 . C T 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=74;Dels=0.00;FS=7.801;HaplotypeScore=5.6475;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=6;MQRankSum=-0.156;QD=2.70;ReadPosRankSum=2.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,40:74:99:230,0,169 chrIV 1308364 . T C 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.524;DP=101;Dels=0.00;FS=3.488;HaplotypeScore=3.7343;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=5;MQRankSum=-1.842;QD=2.01;ReadPosRankSum=4.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,53:101:99:233,0,180 chrIV 1308376 . C T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.590;DP=109;Dels=0.00;FS=2.699;HaplotypeScore=7.5642;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=5;MQRankSum=2.668;QD=1.34;ReadPosRankSum=0.502;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,41:109:99:176,0,243 chrIV 1308387 . C T 435 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9609;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=1;QD=4.78;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:57:468,57,0 chrIV 1308388 . G A 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9609;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=2;MQRankSum=1.334;QD=2.03;ReadPosRankSum=-0.617;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,36:86:71:205,0,71 chrIV 1308430 . G A 182.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=15.3644;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=1;MQRankSum=3.940;QD=2.28;ReadPosRankSum=0.694;SB=-1.197e-02 GT:AD:DP:GQ:PL 0/1:48,32:80:26:212,0,26 chrIV 1308431 . C T 189.22 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.877;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=12.6086;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=1;MQRankSum=3.978;QD=2.34;ReadPosRankSum=0.870;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:48,33:81:10:219,0,10 chrIV 1308436 . A G 230 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.542;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=15.1917;MLEAC=2;MLEAF=1.00;MQ=22.60;MQ0=1;MQRankSum=4.069;QD=3.11;ReadPosRankSum=-0.613;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:11,63:74:30:263,30,0 chrIV 1308444 . A G 172.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.984;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=16.3952;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=2;MQRankSum=4.169;QD=3.31;ReadPosRankSum=-2.365;SB=-2.704e+01 GT:AD:DP:GQ:PL 1/1:13,39:52:24:205,24,0 chrIV 1308447 . G A 112.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.155;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=2;MQRankSum=4.638;QD=2.29;ReadPosRankSum=-2.956;SB=-1.197e+00 GT:AD:DP:GQ:PL 0/1:32,17:49:2:141,0,2 chrIV 1308471 . C T 37.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.7015;MLEAC=2;MLEAF=1.00;MQ=18.39;MQ0=5;QD=1.12;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:70,9,0 chrIV 1308544 . C T 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.289;DP=123;Dels=0.00;FS=13.395;HaplotypeScore=27.5681;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=8;MQRankSum=-0.790;QD=2.63;ReadPosRankSum=2.065;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:95,28:123:99:353,0,179 chrIV 1308549 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.699;DP=123;Dels=0.00;FS=6.366;HaplotypeScore=66.2433;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=7;MQRankSum=5.053;QD=0.21;ReadPosRankSum=-3.180;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,60:123:56:56,0,428 chrIV 1308556 . G A 391.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=42.2123;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=7;MQRankSum=4.354;QD=3.03;ReadPosRankSum=0.815;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:42,87:129:60:421,0,60 chrIV 1308573 . G A 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=5;MQRankSum=4.678;QD=1.48;ReadPosRankSum=6.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,72:112:99:196,0,243 chrIV 1308583 . T C 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.3755;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=2;MQRankSum=2.455;QD=1.80;ReadPosRankSum=6.467;SB=0.021 GT:AD:DP:GQ:PL 0/1:23,82:106:99:221,0,160 chrIV 1308589 . T C 252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.6916;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=0;MQRankSum=2.418;QD=2.60;ReadPosRankSum=4.909;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:11,86:97:56:282,0,56 chrIV 1308631 . T C 484 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.63;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:60:517,60,0 chrIV 1308635 . A G 499 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.24;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:60:532,60,0 chrIV 1308636 . T G 502 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.30;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:60:535,60,0 chrIV 1308637 . A G 448 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.30;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:54:481,54,0 chrIV 1308640 . G A 393 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.28;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:51:426,51,0 chrIV 1308641 . T C 480 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;MQRankSum=-2.914;QD=8.28;ReadPosRankSum=2.809;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,55:58:60:513,60,0 chrIV 1308642 . T C 496 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=8.55;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:60:529,60,0 chrIV 1308644 . A C 489 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=8.15;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:60:522,60,0 chrIV 1308678 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=9.32;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1189,138,0 chrIV 1308951 . C G 2194 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=16.50;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2227,255,0 chrIV 1309104 . C G 1653 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.00;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1686,198,0 chrIV 1309251 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=13.88;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:935,108,0 chrIV 1309349 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.71;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1249,144,0 chrIV 1309390 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.86;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1158,132,0 chrIV 1309424 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,67:72:99:1397,150,0 chrIV 1309473 . A G 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.082;QD=18.24;ReadPosRankSum=1.677;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1182,135,0 chrIV 1309620 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.14;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1265,138,0 chrIV 1309649 . G C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.828;QD=18.90;ReadPosRankSum=0.778;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1337,153,0 chrIV 1309698 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.70;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1544,171,0 chrIV 1309772 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.71;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1441,165,0 chrIV 1310168 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.27;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1466,159,0 chrIV 1310395 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.81;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1420,162,0 chrIV 1310837 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2031,219,0 chrIV 1311671 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.05;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1885,219,0 chrIV 1311768 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.62;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1053,120,0 chrIV 1311784 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.46;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1037,114,0 chrIV 1311941 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.19;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1971,225,0 chrIV 1311986 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.51;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2351,273,0 chrIV 1312036 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.47;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2116,231,0 chrIV 1312038 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.32;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2207,243,0 chrIV 1312058 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.70;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1866,201,0 chrIV 1312234 . A T 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=125;Dels=0.00;FS=6.892;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.718;QD=21.62;ReadPosRankSum=2.307;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2736,306,0 chrIV 1312268 . G A 2913 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.90;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2946,330,0 chrIV 1312365 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.46;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1794,204,0 chrIV 1312371 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.83;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1816,198,0 chrIV 1312462 . A C 1829 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.77;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1862,213,0 chrIV 1312501 . G C 1601 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8256;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.52;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1634,189,0 chrIV 1312526 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.62;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1548,174,0 chrIV 1312613 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.61;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1955,216,0 chrIV 1312700 . C A 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.046;HaplotypeScore=7.0990;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.787;QD=17.69;ReadPosRankSum=1.050;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1218,138,0 chrIV 1312729 . T A 1282 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.58;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1315,144,0 chrIV 1313459 . A G 987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=6.307;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.585;QD=20.56;ReadPosRankSum=-1.732;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1020,114,0 chrIV 1313591 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1194,132,0 chrIV 1314007 . A G 2586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=123;Dels=0.00;FS=5.879;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.844;QD=21.02;ReadPosRankSum=2.910;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2619,294,0 chrIV 1314244 . T C 2057 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.99;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2090,243,0 chrIV 1314298 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.86;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2218,249,0 chrIV 1314697 . G A 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=3.231;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.497;QD=20.78;ReadPosRankSum=1.698;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2173,237,0 chrIV 1314814 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.13;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2348,267,0 chrIV 1314845 . A G 2309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=121;Dels=0.00;FS=9.836;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.598;QD=19.08;ReadPosRankSum=2.941;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:3,116:121:99:2342,267,0 chrIV 1315208 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=105;Dels=0.01;FS=2.784;HaplotypeScore=14.5437;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.107;QD=14.48;ReadPosRankSum=2.379;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1553,174,0 chrIV 1315285 . T G 1319 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0321;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=14.03;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1352,153,0 chrIV 1315908 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.88;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1557,177,0 chrIV 1315959 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.75;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1218,132,0 chrIV 1316046 . G C 1295 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1328,150,0 chrIV 1316130 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.58;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1681,189,0 chrIV 1316641 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.56;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1388,159,0 chrIV 1316682 . A C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.888;QD=20.78;ReadPosRankSum=1.688;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1654,186,0 chrIV 1316858 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1947,216,0 chrIV 1317219 . A C 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=113;Dels=0.00;FS=3.693;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.732;QD=19.73;ReadPosRankSum=1.701;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2262,261,0 chrIV 1317337 . C T 3034 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.9678;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.98;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3067,336,0 chrIV 1317846 . G C 2546 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.05;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2579,294,0 chrIV 1317903 . G C 2675 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.97;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2708,309,0 chrIV 1318030 . A C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.077;QD=18.05;ReadPosRankSum=1.705;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:1,126:134:99:2452,279,0 chrIV 1318378 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.97;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2340,258,0 chrIV 1318438 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.04;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2916,312,0 chrIV 1318483 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=17.4235;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.27;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2249,246,0 chrIV 1318539 . A G 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.279;QD=20.31;ReadPosRankSum=-0.799;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2673,293,0 chrIV 1318750 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.29;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1240,138,0 chrIV 1318821 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.20;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1564,177,0 chrIV 1318845 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=16.69;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1769,201,0 chrIV 1318922 . G T 1873 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2732;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=16.72;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1906,213,0 chrIV 1318943 . A T 1968 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.89;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2001,222,0 chrIV 1319011 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.080;QD=22.47;ReadPosRankSum=1.698;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2302,261,0 chrIV 1319047 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.00;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1734,198,0 chrIV 1319224 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.63;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2176,243,0 chrIV 1319237 . T C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=116;Dels=0.00;FS=2.595;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.887;QD=18.12;ReadPosRankSum=2.940;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2135,240,0 chrIV 1319259 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.07;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2269,255,0 chrIV 1319285 . C T 2999 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7251;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.74;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3032,333,0 chrIV 1319323 . A G 2818 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.43;SB=-1.752e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2851,321,0 chrIV 1319347 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=3.042;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.474;QD=19.63;ReadPosRankSum=2.393;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2604,297,0 chrIV 1319945 . T A 1804 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.6376;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.84;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1837,198,0 chrIV 1320001 . G C 2218 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.80;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2251,261,0 chrIV 1320420 . A C 2171 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.92;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2204,246,0 chrIV 1320570 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.25;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1479,168,0 chrIV 1320636 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0535;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.06;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1193,129,0 chrIV 1320639 . A C 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=1.683;QD=18.29;ReadPosRankSum=1.683;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1313,150,0 chrIV 1321125 . T C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.687;QD=19.56;ReadPosRankSum=1.622;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1265,144,0 chrIV 1322146 . T C 591 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:72:624,72,0 chrIV 1322246 . C T 794 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.47;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:90:827,90,0 chrIV 1322306 . A G 1327 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1360,153,0 chrIV 1322553 . A G 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.248;QD=20.64;ReadPosRankSum=1.650;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:900,102,0 chrIV 1323143 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.05;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2635,300,0 chrIV 1323179 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.35;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2345,267,0 chrIV 1323397 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.00;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2028,222,0 chrIV 1323775 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.82;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2193,243,0 chrIV 1323848 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.38;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2091,225,0 chrIV 1323868 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0378;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.79;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1776,198,0 chrIV 1324089 . T A 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.149;QD=18.19;ReadPosRankSum=1.643;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2216,252,0 chrIV 1324183 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.75;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1914,213,0 chrIV 1324886 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.3102;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.00;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1308,150,0 chrIV 1325346 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.51;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1329,144,0 chrIV 1325849 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.316;QD=21.81;ReadPosRankSum=1.455;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1669,189,0 chrIV 1326224 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.44;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1176,135,0 chrIV 1326959 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1519,171,0 chrIV 1327031 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.70;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1834,201,0 chrIV 1327703 . T C 2014 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5332;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.14;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2047,234,0 chrIV 1327736 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.70;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1899,210,0 chrIV 1328084 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.23;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1591,183,0 chrIV 1328369 . A T 863 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.18;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:896,102,0 chrIV 1328526 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.12;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1009,111,0 chrIV 1328637 . A C 787 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:820,93,0 chrIV 1329379 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.498;QD=21.86;ReadPosRankSum=1.639;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1651,186,0 chrIV 1329703 . A G 772 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:805,90,0 chrIV 1330118 . A C 1322 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.98;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1355,156,0 chrIV 1330557 . T A 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=-0.268;QD=23.46;ReadPosRankSum=1.696;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2309,255,0 chrIV 1330559 . C A 2161 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.28;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2194,252,0 chrIV 1330650 . A G 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.624;QD=24.94;ReadPosRankSum=1.678;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1629,180,0 chrIV 1330877 . G T 2548 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.72;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2581,288,0 chrIV 1330885 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=7.289;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.615;QD=19.20;ReadPosRankSum=2.409;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,120:123:99:2394,282,0 chrIV 1330934 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.79;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2029,219,0 chrIV 1331029 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.5190;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.44;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1750,192,0 chrIV 1331031 . G T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;DP=78;Dels=0.00;FS=46.150;HaplotypeScore=10.5625;MLEAC=1;MLEAF=0.500;MQ=57.40;MQ0=0;MQRankSum=-0.349;QD=0.27;ReadPosRankSum=-4.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,22:78:51:51,0,727 chrIV 1331502 . G A 2501 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3035;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.84;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2534,285,0 chrIV 1331594 . T C 2822 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.7062;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.60;SB=-1.585e+03 GT:AD:DP:GQ:PL 1/1:0,134:137:99:2855,324,0 chrIV 1331692 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=15.88;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1446,168,0 chrIV 1331698 . T A 1388 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=16.14;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1421,156,0 chrIV 1331710 . A C 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.787;QD=15.59;ReadPosRankSum=1.627;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1576,183,0 chrIV 1332047 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7315;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.96;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1658,174,0 chrIV 1332857 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.544;QD=21.04;ReadPosRankSum=1.633;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2242,258,0 chrIV 1333088 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.68;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1702,189,0 chrIV 1333126 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=20.02;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1334,153,0 chrIV 1333130 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=20.78;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1280,138,0 chrIV 1333151 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=17.02;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1122,126,0 chrIV 1333187 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=16.60;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1162,129,0 chrIV 1333205 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=18.99;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1476,156,0 chrIV 1333408 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.39;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1817,198,0 chrIV 1333527 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.51;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1689,192,0 chrIV 1333544 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.94;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1588,180,0 chrIV 1333565 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.32;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1682,186,0 chrIV 1333678 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.13;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1660,186,0 chrIV 1333718 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.13;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1449,153,0 chrIV 1333799 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.92;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1611,174,0 chrIV 1333898 . A G 1280 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.00;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1313,141,0 chrIV 1334337 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.6537;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.33;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:2900,318,0 chrIV 1334925 . G T 1623 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.84;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1656,186,0 chrIV 1335360 . T C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.179;QD=17.60;ReadPosRankSum=1.653;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1564,183,0 chrIV 1335398 . C A 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=94;Dels=0.00;FS=3.510;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.243;QD=16.76;ReadPosRankSum=0.226;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1608,183,0 chrIV 1335762 . G T 1810 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.34;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1843,201,0 chrIV 1336494 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=15.17;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:837,96,0 chrIV 1336509 . T C 733 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.66;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:766,87,0 chrIV 1336581 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=18.16;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1195,132,0 chrIV 1337050 . A T 852 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.21;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:885,99,0 chrIV 1337135 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.76;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:843,93,0 chrIV 1337192 . T G 406 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.65;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:23:51:439,51,0 chrIV 1337236 . T C 595 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:628,69,0 chrIV 1337309 . G C 1271 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.44;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1304,150,0 chrIV 1337684 . C G 2057 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.20;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2090,240,0 chrIV 1337715 . T C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=8.922;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.050;QD=18.49;ReadPosRankSum=2.369;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2289,255,0 chrIV 1337856 . G A 3042 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=17.09;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:3075,348,0 chrIV 1337857 . G A 3152 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.01;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3185,345,0 chrIV 1337917 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=14.64;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2156,240,0 chrIV 1338262 . G T 2428 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.40;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2461,261,0 chrIV 1338288 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=12.91;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:988,111,0 chrIV 1338291 . A G 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=7.322;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=-0.341;QD=12.36;ReadPosRankSum=2.320;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:972,111,0 chrIV 1338321 . T G 561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.01;FS=3.522;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-1.588;QD=7.68;ReadPosRankSum=0.048;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:69:594,69,0 chrIV 1338322 . C T 574 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=4.5203;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=7.97;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:66:607,66,0 chrIV 1338366 . T C 736 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=10.99;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:87:769,87,0 chrIV 1338475 . T A 2441 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.91;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2474,267,0 chrIV 1338585 . A T 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.340;QD=19.33;ReadPosRankSum=1.701;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2217,252,0 chrIV 1338669 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.64;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1356,156,0 chrIV 1339080 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.79;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1733,198,0 chrIV 1339317 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2630;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.76;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1945,210,0 chrIV 1339488 . C T 2279 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.5523;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.17;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2312,255,0 chrIV 1340152 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.83;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2453,267,0 chrIV 1340287 . T C 2133 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.70;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2166,252,0 chrIV 1340407 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.16;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1613,180,0 chrIV 1340419 . T G 1538 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.53;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1571,174,0 chrIV 1340653 . A C 1427 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.99;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1460,168,0 chrIV 1341016 . T G 1037 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.54;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1070,123,0 chrIV 1341209 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=21.14;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1492,168,0 chrIV 1341251 . A C 1796 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=23.03;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1829,207,0 chrIV 1341287 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=21.26;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1415,162,0 chrIV 1341357 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=23.12;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1212,138,0 chrIV 1341496 . T C 508 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=11.55;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:541,63,0 chrIV 1341564 . A C 956 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=9.19;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:989,114,0 chrIV 1341573 . T C 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=0.806;QD=10.29;ReadPosRankSum=1.698;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1072,117,0 chrIV 1341577 . T C 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=-0.332;QD=10.77;ReadPosRankSum=1.697;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1099,123,0 chrIV 1341684 . C G 339 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=7.06;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:42:372,42,0 chrIV 1341693 . C T 346 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=7.21;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:45:379,45,0 chrIV 1341749 . T G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=4.210;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.418;QD=17.08;ReadPosRankSum=1.673;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1041,120,0 chrIV 1341794 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=21.42;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1447,156,0 chrIV 1341826 . G C 1488 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1914;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=20.67;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1521,174,0 chrIV 1342306 . G T 1986 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2019,219,0 chrIV 1342353 . C A 1615 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.6368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1648,177,0 chrIV 1342433 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1511,165,0 chrIV 1342654 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.41;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1426,156,0 chrIV 1342986 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.69;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1440,162,0 chrIV 1343168 . A T 1547 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1580,168,0 chrIV 1343249 . G A 962 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:995,111,0 chrIV 1343326 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1024,111,0 chrIV 1344013 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6510;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.59;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1998,228,0 chrIV 1344040 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.06;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1838,198,0 chrIV 1344235 . C T 532 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=16.62;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:565,66,0 chrIV 1344556 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.55;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:975,105,0 chrIV 1344681 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.07;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1262,144,0 chrIV 1344727 . A G 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=8.6130;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.982;QD=17.05;ReadPosRankSum=1.675;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1056,104,0 chrIV 1345632 . T A 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.314;QD=23.34;ReadPosRankSum=2.367;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1410,150,0 chrIV 1345811 . G A 2238 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9236;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.87;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2271,243,0 chrIV 1345853 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=5.692;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.876;QD=23.18;ReadPosRankSum=1.693;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2096,243,0 chrIV 1346089 . A C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.176;QD=18.64;ReadPosRankSum=0.657;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1487,165,0 chrIV 1346336 . G C 1717 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.73;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1750,198,0 chrIV 1346435 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.47;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1879,207,0 chrIV 1346702 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.73;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1682,195,0 chrIV 1346703 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.54;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1664,189,0 chrIV 1346810 . T C 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=4.279;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.716;QD=20.16;ReadPosRankSum=1.594;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1545,174,0 chrIV 1347032 . T G 1373 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.45;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1406,159,0 chrIV 1347266 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1669,180,0 chrIV 1347311 . T A 1921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=85;Dels=0.00;FS=2.999;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.887;QD=22.60;ReadPosRankSum=2.330;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,81:85:99:1954,216,0 chrIV 1347437 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.38;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1765,204,0 chrIV 1347582 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.59;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1227,141,0 chrIV 1347683 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.85;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1482,165,0 chrIV 1347800 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.63;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1931,210,0 chrIV 1347956 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1046,123,0 chrIV 1348046 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=18.73;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,156,0 chrIV 1348613 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.96;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1521,174,0 chrIV 1348652 . C A 1664 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.29;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1697,189,0 chrIV 1348712 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.10;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1734,201,0 chrIV 1348781 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.4390;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.31;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2041,231,0 chrIV 1348787 . T C 1952 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2824;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=17.91;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1985,228,0 chrIV 1349687 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.01;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1966,228,0 chrIV 1349944 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.29;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1566,171,0 chrIV 1350135 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.95;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1549,180,0 chrIV 1350342 . G A 663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=0.606;QD=15.42;ReadPosRankSum=2.336;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:78:696,78,0 chrIV 1350343 . A G 631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.02;FS=3.222;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.083;QD=14.67;ReadPosRankSum=1.650;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:78:664,78,0 chrIV 1350585 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1576,180,0 chrIV 1350913 . T C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.777;QD=20.62;ReadPosRankSum=1.673;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1229,141,0 chrIV 1351243 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.95;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1353,150,0 chrIV 1351398 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.75;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1444,165,0 chrIV 1351660 . A T 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=52;Dels=0.00;FS=3.651;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.985;QD=18.73;ReadPosRankSum=1.664;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1007,111,0 chrIV 1351681 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.24;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1126,126,0 chrIV 1351696 . A G 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.817;QD=19.20;ReadPosRankSum=2.352;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:993,114,0 chrIV 1351744 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.52;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1326,147,0 chrIV 1351996 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.35;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1754,195,0 chrIV 1352285 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.17;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1567,174,0 chrIV 1352298 . G C 1320 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.37;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1353,153,0 chrIV 1352299 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.75;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1400,153,0 chrIV 1352644 . T A 506 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=2;QD=18.74;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:2,25:27:63:539,63,0 chrIV 1352748 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=5;QD=1.04;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:5,15:20:6:52,6,0 chrIV 1352749 . T A 44.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=5;QD=2.25;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:5,15:20:9:77,9,0 chrIV 1352769 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=6;QD=2.40;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:6,14:20:9:80,9,0 chrIV 1352772 . A C 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=6;QD=2.40;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:6,14:20:9:80,9,0 chrIV 1352775 . G T 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=6;QD=2.20;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:6,14:20:9:76,9,0 chrIV 1352785 . G A 51.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=5;QD=2.74;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,15:19:9:84,9,0 chrIV 1352786 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=4;QD=2.33;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,14:18:9:74,9,0 chrIV 1352787 . A G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=4;QD=2.78;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,14:18:9:82,9,0 chrIV 1352792 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=4;QD=2.67;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,14:18:9:80,9,0 chrIV 1353101 . T G 1285 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=17.36;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1318,147,0 chrIV 1353103 . A G 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.967;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=-1.234;QD=17.41;ReadPosRankSum=2.276;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1269,144,0 chrIV 1353158 . T A 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=7.594;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-2.061;QD=16.89;ReadPosRankSum=2.320;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1317,147,0 chrIV 1353172 . G T 1237 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=19.03;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1270,144,0 chrIV 1353214 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=7.256;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=1.149;QD=23.35;ReadPosRankSum=1.629;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2415,270,0 chrIV 1353245 . A C 2469 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.47;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2502,282,0 chrIV 1353261 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.56;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2224,255,0 chrIV 1353372 . T C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=79;Dels=0.00;FS=5.316;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-1.552;QD=18.73;ReadPosRankSum=2.860;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1513,171,0 chrIV 1353386 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.417;QD=17.74;ReadPosRankSum=2.317;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1346,153,0 chrIV 1353387 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.92;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1359,153,0 chrIV 1353470 . A G 773 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=16.80;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:806,93,0 chrIV 1353481 . A G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.361;QD=15.53;ReadPosRankSum=1.660;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:90:794,90,0 chrIV 1353486 . T A 787 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=15.43;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:820,93,0 chrIV 1353527 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.54;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1489,165,0 chrIV 1353632 . A T 1833 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.37;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1866,213,0 chrIV 1353675 . A G 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=46.6476;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.456;QD=19.23;ReadPosRankSum=1.672;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1129,129,0 chrIV 1353826 . T C 476 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.63;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:57:509,57,0 chrIV 1353834 . C A 472 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.48;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:505,54,0 chrIV 1355287 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.73;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2006,219,0 chrIV 1355944 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.89;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1903,216,0 chrIV 1357207 . A G 1039 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.74;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1072,120,0 chrIV 1357270 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1523,168,0 chrIV 1357702 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1859,201,0 chrIV 1357804 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.047;QD=23.16;ReadPosRankSum=1.685;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1747,201,0 chrIV 1359092 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.61;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1311,141,0 chrIV 1359219 . A T 1074 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.61;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1107,120,0 chrIV 1359221 . T A 1167 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.52;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1200,132,0 chrIV 1359391 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=52;Dels=0.00;FS=17.472;HaplotypeScore=3.6158;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.910;QD=18.56;ReadPosRankSum=3.176;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:4,48:52:99:998,114,0 chrIV 1359646 . C G 2050 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.40;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2083,228,0 chrIV 1359745 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.62;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1353,147,0 chrIV 1359892 . T A 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.237;QD=18.99;ReadPosRankSum=1.626;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1913,213,0 chrIV 1359987 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.405;QD=18.61;ReadPosRankSum=1.658;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1801,204,0 chrIV 1360070 . T C 1519 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.46;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1552,180,0 chrIV 1361031 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1630,186,0 chrIV 1361086 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.83;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1534,168,0 chrIV 1362063 . T A 931 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:964,102,0 chrIV 1362236 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8110;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.47;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2588,291,0 chrIV 1362620 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.31;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2370,267,0 chrIV 1362669 . C G 1859 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.23;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1892,222,0 chrIV 1363552 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1300,153,0 chrIV 1363897 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.55;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1905,204,0 chrIV 1364143 . A T 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.654;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.590;QD=20.26;ReadPosRankSum=-1.590;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1512,168,0 chrIV 1364228 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2427;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.90;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1977,216,0 chrIV 1364750 . A G 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.559;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.589;QD=23.79;ReadPosRankSum=1.663;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2412,273,0 chrIV 1364977 . G A 4511.01 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.25;SB=-2.252e+03 GT:AD:DP:GQ:PL 1/1:0,186:186:99:4511,495,0 chrIV 1365000 . C G 2978 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.12;SB=-1.816e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3011,348,0 chrIV 1365012 . T A 2790 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.98;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2823,309,0 chrIV 1365753 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.17;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2007,228,0 chrIV 1365910 . A T 795 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=17.67;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:828,93,0 chrIV 1365932 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.98;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:860,93,0 chrIV 1365971 . C T 774 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=14.60;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:87:807,87,0 chrIV 1365980 . C T 620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=3.188;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.762;QD=12.16;ReadPosRankSum=-1.386;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:75:653,75,0 chrIV 1366117 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.86;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,159,0 chrIV 1366294 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.51;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1223,141,0 chrIV 1366606 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.91;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1751,189,0 chrIV 1367147 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.45;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1751,198,0 chrIV 1367163 . T C 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.610;QD=19.84;ReadPosRankSum=1.651;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1719,195,0 chrIV 1367859 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1508,171,0 chrIV 1368022 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.25;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1963,213,0 chrIV 1368177 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.08;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1764,198,0 chrIV 1368684 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.71;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1450,165,0 chrIV 1369029 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1511,168,0 chrIV 1369451 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=25.57;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1772,195,0 chrIV 1369505 . G T 2000 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.73;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2033,219,0 chrIV 1369517 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.06;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1457,165,0 chrIV 1369539 . A C 683 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=15.88;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:81:716,81,0 chrIV 1369744 . G C 2276 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.27;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2309,264,0 chrIV 1369795 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.27;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1815,207,0 chrIV 1370033 . T A 1351 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1384,153,0 chrIV 1370065 . T A 1705 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.58;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1738,192,0 chrIV 1370179 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.28;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1756,195,0 chrIV 1370923 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.25;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1361,156,0 chrIV 1371121 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.07;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1692,186,0 chrIV 1371136 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.60;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1660,183,0 chrIV 1371845 . A G 1751 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4377;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.36;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1784,204,0 chrIV 1371862 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=2.593;HaplotypeScore=9.1319;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.297;QD=19.90;ReadPosRankSum=2.393;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1764,195,0 chrIV 1372165 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.78;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:803,93,0 chrIV 1372342 . C T 1334 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.33;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1367,153,0 chrIV 1372366 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.64;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1388,150,0 chrIV 1372422 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9929;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.40;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1760,192,0 chrIV 1372756 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.95;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1646,180,0 chrIV 1372812 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1420,150,0 chrIV 1373071 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.62;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1417,162,0 chrIV 1373275 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6828;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.22;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1655,180,0 chrIV 1373320 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.87;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1564,177,0 chrIV 1373769 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.64;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1301,141,0 chrIV 1373818 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.98;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1172,135,0 chrIV 1373834 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.70;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1156,132,0 chrIV 1374352 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.02;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2059,240,0 chrIV 1374505 . T G 1295 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1328,150,0 chrIV 1374919 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.31;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1617,177,0 chrIV 1375312 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.36;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1849,207,0 chrIV 1376221 . C A 2724 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1907;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.79;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2757,306,0 chrIV 1377451 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:87:783,87,0 chrIV 1377547 . A G 1958 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.88;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1991,225,0 chrIV 1377988 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.71;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1373,147,0 chrIV 1378471 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=12.5095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.97;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,168,0 chrIV 1379613 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.12;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2103,240,0 chrIV 1379732 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.12;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1060,117,0 chrIV 1379733 . T A 1005 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=16.75;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1038,117,0 chrIV 1379791 . A C 1271 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.16;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1304,150,0 chrIV 1379888 . C T 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=4.381;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.306;QD=21.27;ReadPosRankSum=1.447;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1862,204,0 chrIV 1380091 . A G 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.717;QD=20.92;ReadPosRankSum=1.673;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1267,147,0 chrIV 1380270 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.96;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1584,180,0 chrIV 1380625 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.88;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2002,225,0 chrIV 1380649 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.55;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1753,201,0 chrIV 1381414 . A G 958 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.42;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:991,117,0 chrIV 1381550 . A C 1154 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.32;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1187,138,0 chrIV 1381563 . T A 1243 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.38;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1276,138,0 chrIV 1381609 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.95;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1511,165,0 chrIV 1381771 . A T 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=64;Dels=0.00;FS=10.577;HaplotypeScore=8.5887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.804;QD=20.30;ReadPosRankSum=2.293;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1332,150,0 chrIV 1381930 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.66;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1689,186,0 chrIV 1381989 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.21;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1165,132,0 chrIV 1382799 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.85;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2296,258,0 chrIV 1382829 . A G 2167 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.25;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2200,252,0 chrIV 1382859 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.25;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2150,246,0 chrIV 1383527 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=14.3921;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.50;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1938,216,0 chrIV 1383693 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.26;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1974,216,0 chrIV 1383799 . A C 1873 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0582;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.04;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1906,225,0 chrIV 1383939 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.06;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1838,210,0 chrIV 1383963 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.67;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1803,210,0 chrIV 1384110 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.81;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1594,186,0 chrIV 1384770 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.06;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1647,177,0 chrIV 1385256 . C A 400 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=14.81;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:48:433,48,0 chrIV 1385323 . C T 827 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=21.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:93:860,93,0 chrIV 1385522 . A G 1178 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1211,147,0 chrIV 1385632 . A G 929 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=23.82;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:962,111,0 chrIV 1385671 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.74;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1055,117,0 chrIV 1385846 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.49;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2062,228,0 chrIV 1385986 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=16.68;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1501,165,0 chrIV 1386009 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=13.84;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1099,117,0 chrIV 1386016 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=14.00;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1139,129,0 chrIV 1386403 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.10;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1561,177,0 chrIV 1386693 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=48.2597;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=16.23;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1169,138,0 chrIV 1386851 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.078;QD=20.96;ReadPosRankSum=1.681;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1437,165,0 chrIV 1386935 . T C 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=73;Dels=0.00;FS=6.141;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.709;QD=17.67;ReadPosRankSum=2.848;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1323,150,0 chrIV 1386977 . T A 1764 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.82;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1797,198,0 chrIV 1387034 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.94;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1643,183,0 chrIV 1387061 . G C 1644 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.47;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1677,192,0 chrIV 1387160 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=11.81;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1072,120,0 chrIV 1387173 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=13.18;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1074,117,0 chrIV 1387181 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=13.87;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1129,129,0 chrIV 1387223 . C T 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.288;QD=16.73;ReadPosRankSum=-0.799;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1355,147,0 chrIV 1387313 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.87;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1932,210,0 chrIV 1387436 . T C 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.078;QD=21.30;ReadPosRankSum=1.701;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2397,273,0 chrIV 1387622 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.30;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2026,219,0 chrIV 1388069 . T C 1492 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1525,174,0 chrIV 1388274 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.28;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2140,243,0 chrIV 1388378 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.130;QD=20.81;ReadPosRankSum=1.689;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1719,195,0 chrIV 1388568 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.0033;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.53;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1906,216,0 chrIV 1388608 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1929,210,0 chrIV 1389010 . T A 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=91;Dels=0.00;FS=3.059;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.452;QD=21.87;ReadPosRankSum=2.395;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2023,222,0 chrIV 1389053 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.17;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1687,183,0 chrIV 1389063 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=15.14;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1456,165,0 chrIV 1389081 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.02;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1701,183,0 chrIV 1389271 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.39;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1379,156,0 chrIV 1389621 . T C 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=3.647;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.551;QD=16.57;ReadPosRankSum=1.614;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1508,171,0 chrIV 1389786 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.96;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1470,171,0 chrIV 1389819 . A T 1218 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.40;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1251,138,0 chrIV 1389902 . G C 780 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=13.22;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:93:813,93,0 chrIV 1389912 . T G 770 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.81;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:90:803,90,0 chrIV 1389951 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=16.90;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1013,114,0 chrIV 1390233 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.47;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1036,117,0 chrIV 1390260 . T C 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-0.505;QD=20.08;ReadPosRankSum=1.660;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:997,114,0 chrIV 1390711 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.46;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1560,168,0 chrIV 1390794 . T A 976 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.22;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1009,111,0 chrIV 1390932 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.02;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1174,135,0 chrIV 1391073 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.661;QD=17.38;ReadPosRankSum=1.669;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:989,114,0 chrIV 1391127 . C T 553 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.36;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:586,63,0 chrIV 1391349 . T C 1101 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=14.12;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1134,132,0 chrIV 1391355 . T C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4096;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=-0.550;QD=13.49;ReadPosRankSum=2.217;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1045,117,0 chrIV 1391403 . G A 771 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.3127;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=10.01;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:90:804,90,0 chrIV 1391478 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.22;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1589,171,0 chrIV 1391636 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.12;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1791,201,0 chrIV 1391718 . C G 1691 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.00;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:89:99:1724,198,0 chrIV 1391832 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6697;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.50;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1698,186,0 chrIV 1391856 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.03;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1515,168,0 chrIV 1391986 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.91;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1786,195,0 chrIV 1392091 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=5.755;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.734;QD=19.82;ReadPosRankSum=2.908;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:1539,177,0 chrIV 1392105 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.03;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1463,168,0 chrIV 1392142 . C G 1450 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.31;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1483,174,0 chrIV 1392663 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.25;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1815,195,0 chrIV 1392771 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.74;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2316,258,0 chrIV 1392855 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=92;Dels=0.00;FS=6.566;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.095;QD=20.80;ReadPosRankSum=2.396;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1947,225,0 chrIV 1393320 . T A 2075 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.73;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2108,243,0 chrIV 1393432 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.428;QD=21.91;ReadPosRankSum=1.651;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1895,213,0 chrIV 1393543 . A C 2315 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.67;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2348,270,0 chrIV 1393591 . T C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=115;Dels=0.00;FS=8.816;HaplotypeScore=11.5556;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.246;QD=19.13;ReadPosRankSum=2.407;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2233,238,0 chrIV 1393893 . G C 2110 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.53;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2143,246,0 chrIV 1394008 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2419,270,0 chrIV 1394087 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=16.3911;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=14.82;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1648,180,0 chrIV 1394233 . T C 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=11.702;HaplotypeScore=9.8300;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.062;QD=14.45;ReadPosRankSum=2.914;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1218,138,0 chrIV 1394566 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.35;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1486,171,0 chrIV 1394881 . A T 1139 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.98;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1172,129,0 chrIV 1394902 . A T 1057 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.33;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1090,120,0 chrIV 1395687 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1475,159,0 chrIV 1395933 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.29;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1518,171,0 chrIV 1396041 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=5.408;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.315;QD=21.76;ReadPosRankSum=1.680;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1469,162,0 chrIV 1396357 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.53;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1867,219,0 chrIV 1396686 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.95;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1774,204,0 chrIV 1396808 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.59;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1404,150,0 chrIV 1396824 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.19;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1161,132,0 chrIV 1397004 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.00;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1393,165,0 chrIV 1397034 . G T 1475 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.67;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1508,168,0 chrIV 1397575 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.22;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1600,180,0 chrIV 1397646 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.39;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1606,171,0 chrIV 1397754 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:932,108,0 chrIV 1397817 . A G 762 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.21;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:90:795,90,0 chrIV 1398006 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2222,237,0 chrIV 1398466 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.199;QD=19.37;ReadPosRankSum=1.643;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,116:122:99:2396,270,0 chrIV 1398909 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=19.93;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2305,255,0 chrIV 1399186 . T C 2212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.147;QD=18.59;ReadPosRankSum=1.527;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2245,252,0 chrIV 1399425 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.44;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1588,186,0 chrIV 1399536 . T C 1599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=9.834;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.292;QD=19.99;ReadPosRankSum=1.687;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,76:80:99:1632,186,0 chrIV 1399661 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.19;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1412,150,0 chrIV 1399775 . A G 887 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.12;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:920,105,0 chrIV 1399937 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.38;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1893,216,0 chrIV 1399988 . T A 1442 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.17;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1475,162,0 chrIV 1399991 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=15.61;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1313,150,0 chrIV 1400438 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.52;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2185,237,0 chrIV 1400731 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=15.83;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1410,162,0 chrIV 1400762 . T C 1567 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.85;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1600,183,0 chrIV 1400933 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.50;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1291,138,0 chrIV 1401283 . A G 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.84;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1314,147,0 chrIV 1401284 . A G 1241 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=3.041;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.454;QD=18.25;ReadPosRankSum=2.377;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1274,144,0 chrIV 1401288 . C T 1200 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.18;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1233,135,0 chrIV 1401289 . C T 1172 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.76;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1205,132,0 chrIV 1401432 . T G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=105;Dels=0.01;FS=6.970;HaplotypeScore=10.4764;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.495;QD=18.81;ReadPosRankSum=2.401;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2008,228,0 chrIV 1401497 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=9.7687;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.14;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1488,171,0 chrIV 1401563 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.30;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1098,126,0 chrIV 1401828 . C A 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.6476;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.57;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1888,216,0 chrIV 1401873 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.74;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1310,150,0 chrIV 1401877 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9336;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.65;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1458,165,0 chrIV 1401932 . A G 760 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=15.51;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:793,93,0 chrIV 1401937 . A G 681 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=14.19;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:714,81,0 chrIV 1402144 . G C 1983 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.23;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2016,234,0 chrIV 1402305 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.27;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1310,147,0 chrIV 1402695 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.487;QD=19.71;ReadPosRankSum=1.516;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1314,147,0 chrIV 1402714 . G C 1305 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.77;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1338,150,0 chrIV 1402760 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=15.75;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:852,99,0 chrIV 1402910 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.14;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1329,150,0 chrIV 1403082 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.17;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:840,93,0 chrIV 1403130 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.64;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:965,111,0 chrIV 1403147 . T G 1058 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.63;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1091,123,0 chrIV 1403689 . A G 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.224;QD=17.23;ReadPosRankSum=1.686;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1325,150,0 chrIV 1403771 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.18;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2071,231,0 chrIV 1404093 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1870,204,0 chrIV 1404745 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.97;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1627,174,0 chrIV 1405144 . C T 2935 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.67;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2968,321,0 chrIV 1405366 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=93;Dels=0.00;FS=2.529;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.878;QD=14.69;ReadPosRankSum=2.790;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:3,88:92:99:1399,159,0 chrIV 1405832 . T C 734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=53;Dels=0.00;FS=7.618;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.400;QD=13.85;ReadPosRankSum=1.666;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:87:767,87,0 chrIV 1405935 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.40;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1158,126,0 chrIV 1405995 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=16.91;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1115,126,0 chrIV 1406062 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.57;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1568,168,0 chrIV 1406114 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.28;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1453,165,0 chrIV 1406180 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.74;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:794,90,0 chrIV 1406350 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.27;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1533,177,0 chrIV 1406418 . A C 1321 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1354,153,0 chrIV 1406439 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.21;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1427,162,0 chrIV 1406443 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=15.61;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1407,159,0 chrIV 1406542 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.79;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1627,186,0 chrIV 1406566 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.84;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1723,198,0 chrIV 1406731 . T G 1770 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.12;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1803,201,0 chrIV 1406893 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.93;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1959,216,0 chrIV 1406925 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.12;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2137,234,0 chrIV 1406984 . G A 2713 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.59;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2746,297,0 chrIV 1407144 . A G 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=77;Dels=0.00;FS=6.160;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.507;QD=19.51;ReadPosRankSum=2.908;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:3,73:77:99:1535,177,0 chrIV 1407493 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.46;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2120,243,0 chrIV 1407535 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=17.58;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1510,171,0 chrIV 1407542 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.01;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1456,159,0 chrIV 1407581 . A G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.397;QD=19.90;ReadPosRankSum=1.695;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1884,213,0 chrIV 1407674 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.92;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2473,270,0 chrIV 1407845 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.9426;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.16;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2234,243,0 chrIV 1407893 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.08;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1405,162,0 chrIV 1407899 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.15;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1341,147,0 chrIV 1408247 . C T 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.291;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=18.9784;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.873;QD=19.74;ReadPosRankSum=-0.818;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2560,264,0 chrIV 1408334 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.22;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1561,168,0 chrIV 1408568 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.47;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1649,186,0 chrIV 1408733 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8913;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=24.30;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2050,219,0 chrIV 1408760 . T C 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.742;QD=21.01;ReadPosRankSum=1.687;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1672,192,0 chrIV 1408799 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.78;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1327,153,0 chrIV 1408802 . T C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=-0.535;QD=16.46;ReadPosRankSum=1.689;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1366,156,0 chrIV 1409468 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2122,243,0 chrIV 1409794 . A G 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.254;QD=19.25;ReadPosRankSum=1.692;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1708,192,0 chrIV 1409847 . C T 2430 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.09;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2463,270,0 chrIV 1409927 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.75;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,192,0 chrIV 1411151 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.1861;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.72;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3031,324,0 chrIV 1411239 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.15;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1812,201,0 chrIV 1411263 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-0.444;QD=18.73;ReadPosRankSum=1.688;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1494,171,0 chrIV 1411265 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.36;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1524,165,0 chrIV 1411317 . A G 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-1.297;QD=11.40;ReadPosRankSum=2.386;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:911,102,0 chrIV 1411324 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=11.83;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:920,99,0 chrIV 1411563 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.10;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1627,171,0 chrIV 1411608 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.512;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.720;QD=19.98;ReadPosRankSum=1.679;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1332,153,0 chrIV 1411706 . A C 1852 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=5.8961;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.58;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1885,213,0 chrIV 1411737 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.16;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1784,192,0 chrIV 1411831 . A C 2230 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=23.47;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2263,249,0 chrIV 1412016 . A T 1049 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.79;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1082,117,0 chrIV 1412047 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.64;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1192,138,0 chrIV 1412726 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.53;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1942,213,0 chrIV 1412849 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1212;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.35;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1869,201,0 chrIV 1412885 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.27;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1681,186,0 chrIV 1412922 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.95;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1709,183,0 chrIV 1412942 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.000;QD=16.86;ReadPosRankSum=1.683;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1213,141,0 chrIV 1413914 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7934;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.23;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1653,186,0 chrIV 1414499 . A C 1620 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.89;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1653,192,0 chrIV 1414537 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.99;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1849,210,0 chrIV 1414676 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.43;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1017,114,0 chrIV 1414748 . G A 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2757;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.797;QD=22.57;ReadPosRankSum=-1.622;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1455,156,0 chrIV 1414832 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.32;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1618,177,0 chrIV 1414914 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=16.17;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:971,111,0 chrIV 1414919 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5688;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=16.65;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:932,105,0 chrIV 1414935 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.42;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:954,108,0 chrIV 1415006 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.11;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1028,114,0 chrIV 1415045 . T C 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.713;QD=18.06;ReadPosRankSum=1.681;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1261,144,0 chrIV 1415051 . G C 1172 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.76;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1205,138,0 chrIV 1415081 . T C 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.072;QD=17.00;ReadPosRankSum=1.677;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1121,129,0 chrIV 1415193 . A T 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=4.049;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.142;QD=22.19;ReadPosRankSum=1.658;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2119,234,0 chrIV 1415995 . T C 1519 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.53;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1552,177,0 chrIV 1416431 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.58;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1659,177,0 chrIV 1416436 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.74;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1401,159,0 chrIV 1416503 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.76;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1652,180,0 chrIV 1416927 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.89;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1746,201,0 chrIV 1416976 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.45;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2426,273,0 chrIV 1417540 . T A 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=5.538;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.560;QD=20.35;ReadPosRankSum=1.579;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1417,156,0 chrIV 1417646 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1575,171,0 chrIV 1417872 . G A 2088 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.98;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2121,246,0 chrIV 1418534 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.38;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1835,198,0 chrIV 1418662 . T C 1074 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1107,123,0 chrIV 1418910 . A T 2321 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.90;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2354,255,0 chrIV 1418937 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.75;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2544,285,0 chrIV 1418985 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.21;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2090,231,0 chrIV 1419138 . C A 1698 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1731,189,0 chrIV 1419231 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.40;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1229,135,0 chrIV 1419258 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=14.11;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:964,111,0 chrIV 1419261 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:994,111,0 chrIV 1419366 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.65;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2057,222,0 chrIV 1419516 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.58;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1371,156,0 chrIV 1419672 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.6962;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.01;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,95:100:99:1834,204,0 chrIV 1419978 . A G 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=135;Dels=0.00;FS=7.943;HaplotypeScore=7.1740;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.193;QD=17.39;ReadPosRankSum=2.395;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2381,279,0 chrIV 1419993 . T C 2661 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5476;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=19.01;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2694,306,0 chrIV 1420155 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.906;HaplotypeScore=7.1756;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.057;QD=16.53;ReadPosRankSum=1.703;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1983,231,0 chrIV 1420397 . C T 3562.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.74;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3562,390,0 chrIV 1420608 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.963;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.181;QD=19.97;ReadPosRankSum=1.706;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2689,309,0 chrIV 1420941 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.0935;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.19;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2161,237,0 chrIV 1421023 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=5.1580;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.429;QD=15.91;ReadPosRankSum=1.614;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1910,216,0 chrIV 1421140 . C T 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.69;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2438,267,0 chrIV 1421201 . T C 1724 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.52;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1757,201,0 chrIV 1421222 . C A 1165 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=16.64;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1198,135,0 chrIV 1421240 . C T 1202 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.68;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1235,141,0 chrIV 1421288 . T A 1137 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=16.97;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1170,132,0 chrIV 1421307 . A G 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;MQRankSum=-1.195;QD=15.11;ReadPosRankSum=1.683;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1106,126,0 chrIV 1421325 . G T 1199 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=15.37;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1232,135,0 chrIV 1421376 . T G 1012 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.87;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1045,120,0 chrIV 1421386 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.05;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1170,129,0 chrIV 1421456 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.58;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1299,141,0 chrIV 1421572 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.7091;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.45;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1307,141,0 chrIV 1421596 . A G 570 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=10.96;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:69:603,69,0 chrIV 1421606 . G A 670 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=11.36;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:703,78,0 chrIV 1421618 . T C 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=2.607;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;MQRankSum=-1.926;QD=10.89;ReadPosRankSum=2.338;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:84:752,84,0 chrIV 1421621 . T C 701 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=10.62;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:84:734,84,0 chrIV 1421633 . A G 782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.483;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;MQRankSum=-0.736;QD=10.71;ReadPosRankSum=1.637;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:93:815,93,0 chrIV 1421702 . T C 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=73;Dels=0.00;FS=2.801;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-0.120;QD=18.40;ReadPosRankSum=2.381;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1376,159,0 chrIV 1421744 . T C 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.382;QD=18.97;ReadPosRankSum=1.674;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1190,135,0 chrIV 1421768 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.89;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1072,120,0 chrIV 1421908 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=80;Dels=0.00;FS=2.997;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-0.508;QD=17.11;ReadPosRankSum=2.327;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1402,159,0 chrIV 1421954 . A C 1294 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.03;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1327,153,0 chrIV 1421975 . T C 1152 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=16.00;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1185,138,0 chrIV 1422082 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.86;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1283,141,0 chrIV 1422093 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=1.386;QD=18.70;ReadPosRankSum=1.675;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1174,129,0 chrIV 1422480 . G C 672 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=14.93;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:81:705,81,0 chrIV 1422615 . A G 770 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.39;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:90:803,90,0 chrIV 1422776 . A G 678 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.37;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:81:711,81,0 chrIV 1422900 . A T 1241 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.40;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1274,144,0 chrIV 1422918 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.90;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1369,162,0 chrIV 1423134 . T C 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=2.997;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.682;QD=19.88;ReadPosRankSum=2.340;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1365,162,0 chrIV 1423497 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1979,219,0 chrIV 1423605 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.58;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1213,135,0 chrIV 1423651 . A G 840 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.00;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:873,96,0 chrIV 1423668 . A G 775 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.15;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:808,93,0 chrIV 1424016 . A G 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.325;QD=18.81;ReadPosRankSum=1.681;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1312,153,0 chrIV 1424049 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.18;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1951,219,0 chrIV 1424193 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1412,159,0 chrIV 1424605 . G A 917 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.84;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:950,105,0 chrIV 1424813 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.91;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1566,180,0 chrIV 1424955 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.44;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1047,120,0 chrIV 1424978 . T C 963 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.60;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:996,114,0 chrIV 1425132 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.28;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1842,210,0 chrIV 1425177 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.35;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1681,180,0 chrIV 1425246 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.70;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1682,189,0 chrIV 1425361 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.35;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1419,159,0 chrIV 1425476 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0022;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.993;QD=20.91;ReadPosRankSum=1.686;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1622,186,0 chrIV 1425552 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.15;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1721,195,0 chrIV 1425592 . A G 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=91;Dels=0.00;FS=3.054;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.068;QD=19.60;ReadPosRankSum=2.396;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1817,201,0 chrIV 1425629 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.01;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1441,162,0 chrIV 1425647 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.91;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1115,123,0 chrIV 1425652 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.82;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1341,144,0 chrIV 1425776 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.01;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1534,165,0 chrIV 1425830 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.76;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1792,204,0 chrIV 1426036 . A G 664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.318;QD=13.55;ReadPosRankSum=1.662;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:81:697,81,0 chrIV 1426131 . C T 1066 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3992;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=15.45;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1099,126,0 chrIV 1426173 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.52;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1634,177,0 chrIV 1426206 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.55;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1437,162,0 chrIV 1426248 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.7684;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.26;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1103,120,0 chrIV 1426518 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.83;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1163,126,0 chrIV 1426734 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.86;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1213,138,0 chrIV 1426878 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1537,171,0 chrIV 1426980 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.59;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2051,228,0 chrIV 1427031 . T A 1377 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.88;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1410,156,0 chrIV 1427049 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.67;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1390,150,0 chrIV 1427707 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1625,192,0 chrIV 1428300 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=14.74;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1301,150,0 chrIV 1428331 . G C 1840 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=84.8749;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.91;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1873,210,0 chrIV 1428486 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.57;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2132,252,0 chrIV 1428672 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.487;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.180;QD=21.54;ReadPosRankSum=1.704;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2725,312,0 chrIV 1429008 . T G 1958 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.65;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1991,234,0 chrIV 1429017 . T C 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.979;HaplotypeScore=3.3499;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.031;QD=17.39;ReadPosRankSum=1.701;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1963,225,0 chrIV 1429094 . C G 2240 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.74;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2273,258,0 chrIV 1429122 . T C 2027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.761;QD=16.89;ReadPosRankSum=2.387;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2060,231,0 chrIV 1429123 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.701;QD=16.67;ReadPosRankSum=2.409;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2050,231,0 chrIV 1429245 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.48;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1344,156,0 chrIV 1429599 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.56;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1909,216,0 chrIV 1429653 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.32;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2506,273,0 chrIV 1429749 . C G 1704 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.73;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1737,207,0 chrIV 1429971 . C G 1892 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.3435;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.92;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1925,222,0 chrIV 1430016 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.89;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2804,303,0 chrIV 1430075 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=3.274;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.946;QD=21.04;ReadPosRankSum=1.703;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2537,288,0 chrIV 1430241 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.27;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1560,171,0 chrIV 1430249 . G T 1539 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=15.24;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1572,171,0 chrIV 1430342 . T C 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=104;Dels=0.00;FS=5.840;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.126;QD=17.82;ReadPosRankSum=2.874;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1886,210,0 chrIV 1430376 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=15.55;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1743,204,0 chrIV 1430445 . T A 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=3.123;HaplotypeScore=10.4452;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.732;QD=17.14;ReadPosRankSum=1.703;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2038,228,0 chrIV 1430469 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.75;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2065,237,0 chrIV 1430493 . A G 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=117;Dels=0.00;FS=2.851;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=0.957;QD=12.32;ReadPosRankSum=2.408;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:1474,171,0 chrIV 1430496 . G T 1402 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=12.41;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1435,162,0 chrIV 1430819 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.19;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1769,189,0 chrIV 1430837 . A G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.650;QD=16.30;ReadPosRankSum=1.696;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1614,183,0 chrIV 1430882 . A T 1757 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.75;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1790,192,0 chrIV 1430979 . A T 2553 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.45;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2586,279,0 chrIV 1430993 . T C 2218 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.16;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2251,258,0 chrIV 1431080 . G T 1237 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.62;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1270,141,0 chrIV 1431857 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9266;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=15.05;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1237,141,0 chrIV 1432132 . T C 657 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.19;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:690,81,0 chrIV 1432285 . G C 1652 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.40;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1685,195,0 chrIV 1432349 . G C 2574 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0535;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.81;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2607,297,0 chrIV 1432429 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=6.998;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.276;QD=19.75;ReadPosRankSum=2.346;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1435,168,0 chrIV 1432487 . A T 1832 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.11;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1865,201,0 chrIV 1432529 . C A 1998 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1665;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.20;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2031,216,0 chrIV 1432757 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.5509;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=17.60;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1775,195,0 chrIV 1432790 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.01;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1834,207,0 chrIV 1433104 . G C 1718 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.4516;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.71;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1751,204,0 chrIV 1433144 . A C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.582;QD=19.87;ReadPosRankSum=1.657;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1861,213,0 chrIV 1433591 . T C 2061 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.01;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2094,240,0 chrIV 1433693 . A G 1813 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2499;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.11;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1846,210,0 chrIV 1433710 . A T 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.731;QD=19.60;ReadPosRankSum=2.278;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1719,189,0 chrIV 1433930 . T C 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.1603;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.155;QD=21.38;ReadPosRankSum=1.704;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2663,303,0 chrIV 1434006 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.55;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1925,213,0 chrIV 1434139 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.90;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2231,246,0 chrIV 1434291 . T G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.155;QD=20.39;ReadPosRankSum=1.706;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,131:134:99:2765,315,0 chrIV 1434364 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.4272;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.808;QD=15.72;ReadPosRankSum=1.699;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1684,192,0 chrIV 1434729 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.20;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1750,189,0 chrIV 1434754 . C G 1600 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.82;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1633,186,0 chrIV 1434785 . A T 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.199;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.268;QD=20.83;ReadPosRankSum=1.683;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1512,165,0 chrIV 1435238 . T C 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=2.999;HaplotypeScore=7.2401;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.947;QD=18.33;ReadPosRankSum=2.300;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1536,171,0 chrIV 1435319 . C G 1394 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.91;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:70:99:1427,162,0 chrIV 1435565 . T C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=96;Dels=0.00;FS=6.831;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.475;QD=17.60;ReadPosRankSum=2.373;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1723,195,0 chrIV 1435664 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.41;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1339,153,0 chrIV 1435712 . A T 1062 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.67;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1095,123,0 chrIV 1436292 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.44;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2048,234,0 chrIV 1436590 . A G 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.603;DP=94;Dels=0.00;FS=5.691;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.344;QD=19.82;ReadPosRankSum=2.925;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1896,213,0 chrIV 1436636 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.57;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2233,246,0 chrIV 1436661 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-1.732;QD=20.96;ReadPosRankSum=1.698;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2213,249,0 chrIV 1436682 . T A 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=114;Dels=0.00;FS=2.672;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.248;QD=20.16;ReadPosRankSum=2.363;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2331,264,0 chrIV 1436803 . A G 1908 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1941,219,0 chrIV 1437123 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.74;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1928,210,0 chrIV 1437254 . G T 1651 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.72;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1684,183,0 chrIV 1437517 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.45;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1398,156,0 chrIV 1437568 . T C 1143 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.14;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1176,138,0 chrIV 1437602 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.48;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1160,132,0 chrIV 1437691 . C T 794 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:827,93,0 chrIV 1437787 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1398,153,0 chrIV 1438524 . G C 1031 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1064,120,0 chrIV 1438949 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1297,147,0 chrIV 1438982 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.45;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1470,168,0 chrIV 1441482 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.68;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1274,138,0 chrIV 1441483 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.08;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1216,141,0 chrIV 1441919 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.70;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1396,156,0 chrIV 1441973 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.99;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1754,204,0 chrIV 1442392 . T A 1331 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1364,147,0 chrIV 1442725 . T C 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.972;DP=64;Dels=0.00;FS=2.793;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.056;QD=19.73;ReadPosRankSum=2.371;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:2,60:64:99:1296,147,0 chrIV 1443134 . T C 1336 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.56;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1369,156,0 chrIV 1443515 . A T 506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=2.226;QD=11.50;ReadPosRankSum=2.000;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:60:539,60,0 chrIV 1443643 . A T 43.97 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=34.2559;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=1.02;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:9:76,9,0 chrIV 1444058 . C A 1960 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.49;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1993,222,0 chrIV 1444544 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.47;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1987,219,0 chrIV 1444847 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.43;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:1840,216,0 chrIV 1444895 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.85;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1752,192,0 chrIV 1444966 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.35;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1652,192,0 chrIV 1445429 . C T 2966 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.2737;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.91;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,146:149:99:2999,330,0 chrIV 1446020 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1251,147,0 chrIV 1446428 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.51;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1407,156,0 chrIV 1446716 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0010;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.96;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1592,180,0 chrIV 1446792 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.17;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1304,141,0 chrIV 1446999 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.61;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1567,177,0 chrIV 1447111 . T C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=72;Dels=0.00;FS=6.849;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.668;QD=20.10;ReadPosRankSum=2.313;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1480,168,0 chrIV 1447149 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.72;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1836,201,0 chrIV 1447213 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=17.73;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1345,150,0 chrIV 1447231 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.68;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1210,129,0 chrIV 1447296 . A G 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.247;QD=19.98;ReadPosRankSum=1.591;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1012,114,0 chrIV 1447297 . T A 1027 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.40;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1060,114,0 chrIV 1447313 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.57;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1082,117,0 chrIV 1447837 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.18;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1331,147,0 chrIV 1447940 . A G 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.318;QD=16.16;ReadPosRankSum=1.662;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:96:825,96,0 chrIV 1447962 . A G 774 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=14.60;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:807,93,0 chrIV 1447979 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=14.09;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:850,93,0 chrIV 1447991 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=13.82;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:876,99,0 chrIV 1448237 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.52;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1223,135,0 chrIV 1448291 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.12;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1089,123,0 chrIV 1448987 . T A 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=92;Dels=0.00;FS=8.129;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.042;QD=17.07;ReadPosRankSum=2.396;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1603,183,0 chrIV 1449406 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.81;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1819,195,0 chrIV 1449925 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.89;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1063,126,0 chrIV 1450091 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.10;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1246,135,0 chrIV 1450588 . C A 1592 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1625,186,0 chrIV 1450894 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.35;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1465,165,0 chrIV 1452251 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.56;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1305,147,0 chrIV 1452702 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.04;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1995,222,0 chrIV 1453445 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1517,165,0 chrIV 1454207 . C T 2924 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.9199;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.36;SB=-1.718e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2957,327,0 chrIV 1454542 . A T 3658.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=15.2256;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.77;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3658,408,0 chrIV 1454951 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.01;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2498,288,0 chrIV 1455133 . A G 1884 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.98;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1917,219,0 chrIV 1455354 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.75;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2212,237,0 chrIV 1455507 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.79;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2190,246,0 chrIV 1455570 . T C 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=2.931;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.066;QD=19.43;ReadPosRankSum=2.240;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1859,210,0 chrIV 1455651 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.83;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1976,219,0 chrIV 1455747 . A G 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.463;QD=20.18;ReadPosRankSum=1.643;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2374,270,0 chrIV 1458101 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.43;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2455,279,0 chrIV 1458243 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=4.472;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.567;QD=14.70;ReadPosRankSum=1.691;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1297,150,0 chrIV 1458423 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=16.26;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1805,204,0 chrIV 1458432 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.56;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1719,192,0 chrIV 1458678 . G A 1228 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=15.95;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1261,138,0 chrIV 1458903 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.38;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1157,126,0 chrIV 1459584 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.01;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1530,165,0 chrIV 1459669 . C G 1373 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.6422;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.07;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1406,162,0 chrIV 1460233 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3588;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.163;QD=18.24;ReadPosRankSum=1.703;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2185,246,0 chrIV 1460259 . T G 1714 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.04;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1747,201,0 chrIV 1460373 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.92;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1547,177,0 chrIV 1460484 . A T 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.4418;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.808;QD=19.49;ReadPosRankSum=1.686;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1534,165,0 chrIV 1460721 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.95;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1416,159,0 chrIV 1460832 . T C 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.207;QD=21.56;ReadPosRankSum=1.680;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1456,165,0 chrIV 1460932 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.93;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1477,162,0 chrIV 1460968 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=95;Dels=0.00;FS=5.649;HaplotypeScore=6.5425;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.266;QD=19.02;ReadPosRankSum=2.735;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1840,210,0 chrIV 1461187 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.21;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1666,183,0 chrIV 1461375 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0654;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.31;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1799,210,0 chrIV 1461391 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.04;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1873,201,0 chrIV 1461591 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.44;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1332,144,0 chrIV 1461597 . A G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=72;Dels=0.00;FS=6.208;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.886;QD=16.03;ReadPosRankSum=2.276;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1187,138,0 chrIV 1461878 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=16.97;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1628,183,0 chrIV 1461904 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.48;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1678,186,0 chrIV 1461941 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=16.93;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1472,168,0 chrIV 1461955 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=15.34;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1076,123,0 chrIV 1462081 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.95;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1635,186,0 chrIV 1462233 . T C 2115 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.03;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2148,249,0 chrIV 1462394 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1476,159,0 chrIV 1463345 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.42;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1871,210,0 chrIV 1463485 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.33;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1194,132,0 chrIV 1463798 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1190,132,0 chrIV 1464464 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.17;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1655,177,0 chrIV 1464658 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.69;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1391,150,0 chrIV 1464680 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.54;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1304,147,0 chrIV 1465388 . A G 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=96;Dels=0.00;FS=11.272;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.211;QD=16.82;ReadPosRankSum=2.927;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1648,186,0 chrIV 1465397 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.62;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1634,177,0 chrIV 1465643 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.69;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,162,0 chrIV 1465791 . A G 1880 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.00;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1913,213,0 chrIV 1466196 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.60;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2150,240,0 chrIV 1466197 . C A 2092 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.19;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2125,240,0 chrIV 1466217 . T C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=5.315;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.306;QD=18.28;ReadPosRankSum=1.698;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1898,219,0 chrIV 1466338 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.20;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:987,111,0 chrIV 1466633 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3746;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.66;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1896,216,0 chrIV 1466643 . C A 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.88;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1787,201,0 chrIV 1466740 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=7.690;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.474;QD=23.15;ReadPosRankSum=1.695;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2209,249,0 chrIV 1467056 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.76;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2453,279,0 chrIV 1467059 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.03;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2488,279,0 chrIV 1467094 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.75;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2302,258,0 chrIV 1467260 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.96;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2170,243,0 chrIV 1467803 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=3.358;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.199;QD=21.77;ReadPosRankSum=1.688;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1753,198,0 chrIV 1468321 . G C 1171 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.52;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1204,138,0 chrIV 1468381 . G C 1478 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.11;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1511,171,0 chrIV 1468562 . G A 713 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.0765;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.98;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:746,81,0 chrIV 1468720 . C A 1589 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.77;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1622,180,0 chrIV 1469161 . A G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.4991;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.253;QD=18.24;ReadPosRankSum=1.690;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1565,180,0 chrIV 1469510 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.36;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1229,138,0 chrIV 1469751 . C T 1282 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1315,141,0 chrIV 1469888 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.76;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2261,246,0 chrIV 1470784 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.10;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1369,156,0 chrIV 1471461 . T C 785 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:93:818,93,0 chrIV 1472259 . C T 2514 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.44;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2547,282,0 chrIV 1472336 . C A 2836 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.63;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2869,309,0 chrIV 1473860 . C A 2314 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0516;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.61;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2347,258,0 chrIV 1473919 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.3986;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.73;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1533,174,0 chrIV 1474061 . A G 827 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.38;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:860,99,0 chrIV 1474139 . A C 1332 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7953;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=15.67;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1365,153,0 chrIV 1474473 . C T 1148 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=23.43;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1181,129,0 chrIV 1474481 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.47;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1077,123,0 chrIV 1474567 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.09;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:892,96,0 chrIV 1474834 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.15;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1023,117,0 chrIV 1475397 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.5236;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.38;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2184,234,0 chrIV 1476338 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1591,183,0 chrIV 1476401 . G C 2200 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.79;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2233,249,0 chrIV 1476502 . T C 2563 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.68;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2596,300,0 chrIV 1476515 . C T 2773 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.81;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2806,309,0 chrIV 1476956 . C A 1449 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.46;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1482,162,0 chrIV 1477116 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=109;Dels=0.00;FS=16.801;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.066;QD=18.01;ReadPosRankSum=3.376;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:4,104:109:99:1996,228,0 chrIV 1477174 . T A 2137 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.43;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2170,240,0 chrIV 1477505 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.94;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2268,261,0 chrIV 1478388 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=14.95;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:990,117,0 chrIV 1478891 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.33;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1680,183,0 chrIV 1478931 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.31;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1711,186,0 chrIV 1479318 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.91;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1748,198,0 chrIV 1479403 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.62;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1662,189,0 chrIV 1479562 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.28;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2239,249,0 chrIV 1479690 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.95;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1688,183,0 chrIV 1480113 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.02;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1764,201,0 chrIV 1480146 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.177;QD=18.58;ReadPosRankSum=1.626;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1872,219,0 chrIV 1480271 . C A 1553 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1586,174,0 chrIV 1480352 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1701,186,0 chrIV 1480428 . A T 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=3.014;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.309;QD=19.38;ReadPosRankSum=2.269;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1351,144,0 chrIV 1480943 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=13.58;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1106,126,0 chrIV 1480945 . A T 1319 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=15.89;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1352,150,0 chrIV 1480972 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=15.93;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1435,168,0 chrIV 1481613 . A C 1020 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1053,120,0 chrIV 1481883 . C G 1247 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1280,144,0 chrIV 1482943 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.92;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1581,177,0 chrIV 1483024 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.77;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1944,222,0 chrIV 1483110 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.98;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1813,195,0 chrIV 1483409 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=61.7242;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=0.18;SB=-7.938e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:6:43,6,0 chrIV 1483873 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.86;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1382,153,0 chrIV 1484273 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.23;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1052,114,0 chrIV 1484422 . A G 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=20.75;ReadPosRankSum=1.646;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:863,99,0 chrIV 1484729 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.65;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1440,162,0 chrIV 1484812 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1744,186,0 chrIV 1485012 . G T 1398 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1431,156,0 chrIV 1485530 . T A 483 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.25;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:516,57,0 chrIV 1485542 . C T 274 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=12.45;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,20:22:36:307,36,0 chrIV 1485740 . T A 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.135;QD=18.11;ReadPosRankSum=2.128;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:93:866,93,0 chrIV 1485742 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.23;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:879,96,0 chrIV 1485812 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.25;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1005,114,0 chrIV 1486166 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.93;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1624,180,0 chrIV 1487095 . T A 1540 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.10;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1573,168,0 chrIV 1487442 . C G 1509 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1542,177,0 chrIV 1487967 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.760;QD=20.63;ReadPosRankSum=1.611;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1209,135,0 chrIV 1488034 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.73;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1082,120,0 chrIV 1488306 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.16;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2642,288,0 chrIV 1488682 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.5903;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.75;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2096,237,0 chrIV 1488904 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.5232;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.47;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1769,192,0 chrIV 1489005 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6839;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.66;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1370,147,0 chrIV 1489122 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.12;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1428,162,0 chrIV 1489245 . C T 1184 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=59.9235;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1217,135,0 chrIV 1489717 . G C 490 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.60;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:60:523,60,0 chrIV 1490249 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.45;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1269,144,0 chrIV 1491138 . T C 839 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.07;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:872,99,0 chrIV 1491201 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.79;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:90:798,90,0 chrIV 1491321 . C G 1610 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.91;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1643,186,0 chrIV 1491574 . G A 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.720;QD=22.60;ReadPosRankSum=1.572;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1502,162,0 chrIV 1491605 . T A 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=7.322;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.081;QD=23.75;ReadPosRankSum=2.385;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1838,198,0 chrIV 1491852 . A G 2643 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.98;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2676,306,0 chrIV 1491889 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.39;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2630,288,0 chrIV 1491912 . G T 1933 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.78;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1966,216,0 chrIV 1492309 . T G 1660 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.43;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1693,195,0 chrIV 1492576 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=19.66;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1075,117,0 chrIV 1492722 . A G 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=52;Dels=0.00;FS=21.011;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.501;QD=18.37;ReadPosRankSum=2.782;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:3,48:52:99:988,114,0 chrIV 1493527 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.00;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:879,96,0 chrIV 1493678 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.11;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1802,198,0 chrIV 1493732 . T G 1219 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.05;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1252,141,0 chrIV 1493869 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.03;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.87;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1720,189,0 chrIV 1493909 . A G 1468 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=7.466;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;MQRankSum=-0.948;QD=13.85;ReadPosRankSum=1.699;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1501,177,0 chrIV 1493916 . T C 1516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=-1.011;QD=12.85;ReadPosRankSum=2.387;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:1549,180,0 chrIV 1493918 . T C 1580 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;MQRankSum=-1.446;QD=13.06;ReadPosRankSum=1.703;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1613,186,0 chrIV 1493936 . T A 1707 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=12.83;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1740,198,0 chrIV 1494204 . G A 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.875;QD=17.11;ReadPosRankSum=1.218;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:1795,180,0 chrIV 1494510 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.37;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1255,144,0 chrIV 1494753 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1257,138,0 chrIV 1494981 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.56;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2063,237,0 chrIV 1495218 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1714,183,0 chrIV 1495550 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1290;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.93;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1642,186,0 chrIV 1495580 . C A 2100 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.34;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2133,228,0 chrIV 1495656 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.70;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1213,135,0 chrIV 1496312 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.65;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1059,120,0 chrIV 1497025 . T C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=4.191;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-1.196;QD=18.85;ReadPosRankSum=1.567;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1654,192,0 chrIV 1497031 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.11;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1657,186,0 chrIV 1497133 . A T 2815 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.17;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2848,318,0 chrIV 1497214 . G A 2930 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.4189;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.20;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2963,321,0 chrIV 1497535 . A G 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=1.099;QD=14.90;ReadPosRankSum=1.658;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1419,165,0 chrIV 1497552 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=16.21;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1411,153,0 chrIV 1497589 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.00;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1248,138,0 chrIV 1497628 . A G 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.391;QD=15.10;ReadPosRankSum=2.327;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:939,105,0 chrIV 1498087 . C G 1033 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1066,123,0 chrIV 1498969 . G C 1879 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.88;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1912,219,0 chrIV 1499290 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.24;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2124,225,0 chrIV 1499328 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.35;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2210,240,0 chrIV 1500051 . C T 644 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.77;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:677,75,0 chrIV 1500073 . T C 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.00;FS=3.823;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.225;QD=18.79;ReadPosRankSum=1.648;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:90:822,90,0 chrIV 1500134 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.86;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1476,162,0 chrIV 1500712 . A T 1772 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.15;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1805,195,0 chrIV 1501187 . G C 1121 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1154,132,0 chrIV 1502362 . G A 700 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=16.67;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:733,81,0 chrIV 1502377 . G A 507 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.08;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:540,63,0 chrIV 1502418 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.61;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:889,99,0 chrIV 1502550 . A G 760 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.54;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:90:793,90,0 chrIV 1502599 . A G 929 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.64;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:962,108,0 chrIV 1502666 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.55;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1109,126,0 chrIV 1503903 . G A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.128;DP=99;Dels=0.00;FS=0.934;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=52.08;MQ0=0;MQRankSum=-2.066;QD=0.37;ReadPosRankSum=-1.940;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:77,22:99:67:67,0,1123 chrIV 1503929 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2111;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=14.03;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1408,162,0 chrIV 1503944 . A G 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.059;DP=103;Dels=0.00;FS=1.911;HaplotypeScore=25.6131;MLEAC=1;MLEAF=0.500;MQ=45.08;MQ0=0;MQRankSum=-0.147;QD=1.18;ReadPosRankSum=3.614;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:75,26:103:99:152,0,907 chrIV 1503962 . A G 311.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.395;DP=100;Dels=0.00;FS=10.671;HaplotypeScore=10.6663;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=1;MQRankSum=3.110;QD=3.11;ReadPosRankSum=0.803;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:62,36:100:99:341,0,560 chrIV 1503975 . A G 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.081;DP=98;Dels=0.00;FS=0.841;HaplotypeScore=8.2894;MLEAC=1;MLEAF=0.500;MQ=46.97;MQ0=1;MQRankSum=-3.764;QD=1.34;ReadPosRankSum=-2.595;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:66,32:98:99:161,0,931 chrIV 1504193 . A G 1707 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=4;MQRankSum=-0.185;QD=15.81;ReadPosRankSum=1.698;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1740,201,0 chrIV 1504222 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=1;QD=20.09;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2484,285,0 chrIV 1504511 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.759;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.8139;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=2;MQRankSum=1.532;QD=16.42;ReadPosRankSum=0.358;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2069,237,0 chrIV 1504541 . A G 1887 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=8;MQRankSum=-1.446;QD=14.52;ReadPosRankSum=1.703;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:1920,222,0 chrIV 1504951 . C G 2397 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.14;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2430,282,0 chrIV 1505138 . T A 1834 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.13;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1867,201,0 chrIV 1505716 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.806;QD=21.79;ReadPosRankSum=1.531;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1907,216,0 chrIV 1506118 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.98;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1332,153,0 chrIV 1506546 . C A 1824 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.24;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1857,207,0 chrIV 1506696 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.52;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1663,189,0 chrIV 1506713 . T C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=6.292;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.496;QD=17.20;ReadPosRankSum=2.270;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1443,162,0 chrIV 1506970 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.21;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1531,165,0 chrIV 1506992 . G C 1248 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.83;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1281,138,0 chrIV 1506997 . T C 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.834;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.188;QD=15.71;ReadPosRankSum=1.683;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1133,132,0 chrIV 1507082 . C G 1980 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.2826;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.52;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2013,228,0 chrIV 1507218 . A G 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=5.749;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.447;QD=22.55;ReadPosRankSum=1.676;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,123:125:99:2852,324,0 chrIV 1507780 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.16;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1011,111,0 chrIV 1508583 . G T 2594 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2627,288,0 chrIV 1508760 . T C 1243 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.51;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1276,147,0 chrIV 1509719 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.10;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1083,123,0 chrIV 1509977 . T A 1654 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1073;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.63;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1687,183,0 chrIV 1510411 . A G 1572 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.68;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1605,183,0 chrIV 1510510 . C A 2181 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.83;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2214,240,0 chrIV 1511013 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9401;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.34;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2017,222,0 chrIV 1511041 . C T 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.210;QD=17.38;ReadPosRankSum=-1.685;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,72:76:99:1354,153,0 chrIV 1511078 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.92;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1581,174,0 chrIV 1511255 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.736;HaplotypeScore=11.6086;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.632;QD=17.34;ReadPosRankSum=1.699;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1836,213,0 chrIV 1511750 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.30;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2316,258,0 chrIV 1511860 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.18;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1541,174,0 chrIV 1512102 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.2656;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.38;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2450,261,0 chrIV 1512312 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.01;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1630,183,0 chrIV 1513649 . T C 1640 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.83;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1673,189,0 chrIV 1513657 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=9.638;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.516;QD=16.83;ReadPosRankSum=2.185;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1598,183,0 chrIV 1514258 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.43;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2607,288,0 chrIV 1514440 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.90;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2179,237,0 chrIV 1514500 . A G 2415 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.57;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2448,279,0 chrIV 1514528 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-1.099;QD=22.02;ReadPosRankSum=1.699;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2323,264,0 chrIV 1514569 . A T 2042 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.20;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2075,234,0 chrIV 1514618 . T G 1713 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.25;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1746,195,0 chrIV 1514662 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=16.4088;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.48;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2331,255,0 chrIV 1514724 . G A 2744 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.61;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2777,312,0 chrIV 1514773 . A C 2117 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.7469;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.41;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2150,246,0 chrIV 1515052 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.8294;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.886;QD=18.24;ReadPosRankSum=1.653;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,130:135:99:2496,282,0 chrIV 1515183 . T C 2445 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.64;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2478,285,0 chrIV 1515245 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.16;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1853,207,0 chrIV 1515254 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=18.94;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1927,216,0 chrIV 1515303 . A T 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.680;QD=20.20;ReadPosRankSum=1.706;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2760,300,0 chrIV 1515498 . G C 2000 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.20;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2033,231,0 chrIV 1515965 . G T 1840 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=17.52;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1873,207,0 chrIV 1516047 . T C 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.417;QD=22.44;ReadPosRankSum=1.644;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1806,207,0 chrIV 1516077 . C A 2074 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.79;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2107,225,0 chrIV 1516115 . C A 2175 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.89;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2208,240,0 chrIV 1516642 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=7.536;HaplotypeScore=158.1554;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-2.346;QD=0.16;ReadPosRankSum=2.420;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:6:57,6,0 chrIV 1516658 . T C 2714 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=16.35;SB=-2.017e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:2747,312,0 chrIV 1516718 . T C 2769 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=13.3558;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.46;SB=-1.809e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:2802,315,0 chrIV 1516981 . A G 3012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.708;QD=20.92;ReadPosRankSum=1.684;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3045,345,0 chrIV 1517095 . C A 1173 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1206,135,0 chrIV 1517488 . G T 1305 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.91;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1338,144,0 chrIV 1517745 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.17;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1409,156,0 chrIV 1518269 . A G 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=12.230;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.957;QD=21.56;ReadPosRankSum=2.900;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1542,177,0 chrIV 1518425 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1843;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.82;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2677,312,0 chrIV 1519267 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.37;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1576,180,0 chrIV 1519365 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.473;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.693;QD=21.20;ReadPosRankSum=1.460;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1920,216,0 chrIV 1519512 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.425;QD=22.53;ReadPosRankSum=1.688;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1813,207,0 chrIV 1519952 . T A 2380 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.56;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2413,267,0 chrIV 1520098 . G C 1443 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.04;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1476,168,0 chrIV 1520281 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.56;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1715,180,0 chrIV 1520393 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9631;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.40;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1837,201,0 chrIV 1520515 . G C 1462 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.76;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1495,168,0 chrIV 1520721 . T C 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.354;QD=22.14;ReadPosRankSum=1.693;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1981,222,0 chrIV 1520764 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.61;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1744,195,0 chrIV 1520765 . A G 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2304;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=1.031;QD=20.20;ReadPosRankSum=1.691;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1730,195,0 chrIV 1520802 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=15.09;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1044,117,0 chrIV 1520813 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=14.07;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:793,87,0 chrIV 1520843 . G A 946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.144;QD=17.85;ReadPosRankSum=1.667;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:979,105,0 chrIV 1521369 . A C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=122;Dels=0.00;FS=13.788;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.744;QD=22.47;ReadPosRankSum=2.943;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2774,312,0 chrIV 1521484 . G A 3171 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.6494;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.58;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3204,345,0 chrIV 1521562 . A G 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=3.532;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.209;QD=23.52;ReadPosRankSum=1.601;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2526,288,0 chrIV 1521852 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.54;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1935,216,0 chrIV 1522055 . T C 1670 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.86;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1703,189,0 chrIV 1522205 . G C 1163 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.07;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1196,135,0 chrIV 1522617 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.264;QD=21.76;ReadPosRankSum=2.405;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2427,276,0 chrIV 1522830 . T C 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=6.9729;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=-0.039;QD=23.03;ReadPosRankSum=1.653;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2106,237,0 chrIV 1522960 . C G 1701 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=13.94;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1734,201,0 chrIV 1523009 . T G 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=5.326;HaplotypeScore=16.7109;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.901;QD=16.35;ReadPosRankSum=1.686;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2486,279,0 chrIV 1523146 . T A 1640 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.461;DP=115;Dels=0.00;FS=17.940;HaplotypeScore=6.6974;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=1.955;QD=14.26;ReadPosRankSum=2.049;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:9,105:115:57:1673,57,0 chrIV 1523147 . T G 1684 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DP=113;Dels=0.00;FS=7.004;HaplotypeScore=6.8210;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;MQRankSum=1.539;QD=14.90;ReadPosRankSum=1.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:8,105:113:83:1717,83,0 chrIV 1523161 . A T 264 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=11.5475;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=18.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:297,33,0 chrIV 1523176 . T C 261 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:294,33,0 chrIV 1523182 . T A 263 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:296,33,0 chrIV 1523190 . C T 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:292,33,0 chrIV 1523191 . A C 256 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:289,33,0 chrIV 1523192 . G T 261 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:294,33,0 chrIV 1523194 . C T 260 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:293,33,0 chrIV 1523198 . T C 256 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:289,33,0 chrIV 1523202 . T C 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=21.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:33:292,33,0 chrIV 1523232 . A C 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=2;QD=1.55;SB=-4.826e+01 GT:AD:DP:GQ:PL 1/1:0,8:9:6:45,6,0 chrIV 1523305 . C T 230.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.317;DP=76;Dels=0.00;FS=37.371;HaplotypeScore=6.7915;MLEAC=2;MLEAF=1.00;MQ=15.34;MQ0=18;MQRankSum=0.853;QD=3.03;ReadPosRankSum=-2.221;SB=-3.391e-01 GT:AD:DP:GQ:PL 1/1:23,53:76:14:263,14,0 chrIV 1523350 . T G 185.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=72;Dels=0.00;FS=45.901;HaplotypeScore=6.7169;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=23;MQRankSum=2.257;QD=2.57;ReadPosRankSum=3.189;SB=-1.202e+00 GT:AD:DP:GQ:PL 1/1:23,48:72:8:217,8,0 chrIV 1523356 . G A 234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=71;Dels=0.00;FS=7.370;HaplotypeScore=3.3682;MLEAC=2;MLEAF=1.00;MQ=17.23;MQ0=24;MQRankSum=0.762;QD=3.30;ReadPosRankSum=2.241;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:17,54:71:30:267,30,0 chrIV 1523491 . T C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=56;Dels=0.00;FS=17.015;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=23;MQRankSum=-0.997;QD=0.38;ReadPosRankSum=2.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,7:56:51:51,0,311 chrIV 1523586 . T A 135.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=19;Dels=0.00;FS=4.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=6;MQRankSum=-1.737;QD=7.11;ReadPosRankSum=1.470;SB=-8.263e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:18:168,18,0 chrIV 1523658 . G T 475 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=23;QD=8.64;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:60:508,60,0 chrIV 1523684 . A G 548 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=63;Dels=0.00;FS=17.330;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=25;MQRankSum=0.300;QD=8.70;ReadPosRankSum=3.623;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:18,45:63:69:581,69,0 chrIV 1523744 . A G 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.846;DP=159;Dels=0.00;FS=2.508;HaplotypeScore=10.4376;MLEAC=1;MLEAF=0.500;MQ=33.49;MQ0=13;MQRankSum=-7.880;QD=4.10;ReadPosRankSum=0.082;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:41,115:159:99:682,0,735 chrIV 1523989 . T C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;DP=91;Dels=0.00;FS=11.692;HaplotypeScore=7.0208;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=4;MQRankSum=-0.478;QD=0.13;ReadPosRankSum=-2.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,23:91:42:42,0,849 chrIV 1524003 . C T 726.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.870;DP=133;Dels=0.00;FS=23.763;HaplotypeScore=5.2092;MLEAC=1;MLEAF=0.500;MQ=37.77;MQ0=6;MQRankSum=-2.121;QD=5.46;ReadPosRankSum=-1.001;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:66,66:133:99:756,0,878 chrIV 1524025 . T C 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.398;DP=131;Dels=0.00;FS=21.488;HaplotypeScore=31.9530;MLEAC=1;MLEAF=0.500;MQ=35.80;MQ0=6;MQRankSum=-3.138;QD=4.40;ReadPosRankSum=-1.155;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:61,70:131:99:606,0,962 chrIV 1524077 . T A 499.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.886;DP=181;Dels=0.00;FS=7.507;HaplotypeScore=31.8251;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=2;MQRankSum=-0.875;QD=2.76;ReadPosRankSum=-0.887;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:103,78:181:99:529,0,920 chrIV 1524097 . T G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.424;DP=173;Dels=0.00;FS=41.721;HaplotypeScore=15.9324;MLEAC=1;MLEAF=0.500;MQ=31.61;MQ0=0;MQRankSum=-5.994;QD=0.13;ReadPosRankSum=-0.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,80:173:52:52,0,1203 chrIV 1524141 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=-5.881;QD=0.21;ReadPosRankSum=-1.809;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,59:160:64:64,0,1544 chrIV 1524299 . C A 2134 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.3208;MLEAC=2;MLEAF=1.00;MQ=33.86;MQ0=2;QD=16.17;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,100:132:99:2167,243,0 chrIV 1524313 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=35.5305;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=3;QD=14.05;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:1831,207,0 chrIV 1524351 . G T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DP=110;Dels=0.00;FS=21.914;HaplotypeScore=39.3351;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=1;MQRankSum=-0.923;QD=0.18;ReadPosRankSum=1.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,18:110:50:50,0,991 chrIV 1524357 . A C 424.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740;DP=108;Dels=0.00;FS=26.244;HaplotypeScore=47.5351;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=4;MQRankSum=2.844;QD=3.93;ReadPosRankSum=-0.148;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:54,50:108:99:454,0,404 chrIV 1524372 . C G 1096 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=29.1981;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=4;QD=11.18;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1129,132,0 chrIV 1524385 . T G 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;DP=95;Dels=0.00;FS=10.996;HaplotypeScore=95.9873;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=4;MQRankSum=2.935;QD=0.87;ReadPosRankSum=2.935;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:79,16:95:99:113,0,896 chrIV 1524386 . G A 331.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;DP=94;Dels=0.00;FS=67.002;HaplotypeScore=88.1009;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=4;MQRankSum=1.666;QD=3.52;ReadPosRankSum=3.416;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:60,34:94:99:361,0,617 chrIV 1524388 . G A 342.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DP=95;Dels=0.00;FS=68.062;HaplotypeScore=80.2024;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=4;MQRankSum=1.630;QD=3.60;ReadPosRankSum=3.009;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:61,34:95:99:372,0,633 chrIV 1524390 . T A 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=96;Dels=0.00;FS=11.656;HaplotypeScore=83.5138;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=4;MQRankSum=2.024;QD=0.90;ReadPosRankSum=2.601;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:80,16:96:99:116,0,937 chrIV 1524399 . G A 349.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.001;DP=106;Dels=0.00;FS=68.847;HaplotypeScore=25.3806;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=4;MQRankSum=1.104;QD=3.29;ReadPosRankSum=-0.682;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,38:106:99:379,0,769 chrIV 1524400 . G A 338.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=105;Dels=0.00;FS=64.783;HaplotypeScore=25.3806;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=4;MQRankSum=1.549;QD=3.22;ReadPosRankSum=-0.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,36:105:99:368,0,779 chrIV 1524412 . G T 276.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;DP=93;Dels=0.00;FS=43.509;HaplotypeScore=15.5531;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=3;MQRankSum=2.504;QD=2.97;ReadPosRankSum=-0.069;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,29:93:99:306,0,739 chrIV 1524413 . G A 327.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DP=93;Dels=0.00;FS=47.101;HaplotypeScore=15.5531;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=3;MQRankSum=2.861;QD=3.52;ReadPosRankSum=-0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,31:93:99:357,0,716 chrIV 1524416 . G A 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2955;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=3;QD=14.13;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1319,147,0 chrIV 1524418 . C A 1264 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.0276;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=3;QD=12.90;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1297,147,0 chrIV 1524478 . G A 1130.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;DP=167;Dels=0.00;FS=71.295;HaplotypeScore=46.6575;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=2;MQRankSum=-1.459;QD=6.77;ReadPosRankSum=0.716;SB=-4.590e+02 GT:AD:DP:GQ:PL 0/1:80,86:167:99:1160,0,940 chrIV 1524506 . G T 1498.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.880;DP=198;Dels=0.00;FS=26.264;HaplotypeScore=102.8758;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=2;MQRankSum=-4.795;QD=7.57;ReadPosRankSum=-2.250;SB=-5.610e+02 GT:AD:DP:GQ:PL 0/1:55,143:198:99:1528,0,839 chrIV 1524511 . C G 812.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=209;Dels=0.00;FS=48.276;HaplotypeScore=90.2278;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=2;MQRankSum=1.356;QD=3.89;ReadPosRankSum=1.343;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:136,69:209:99:842,0,1391 chrIV 1524519 . A T 528.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=192;Dels=0.00;FS=14.140;HaplotypeScore=50.3648;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=2;MQRankSum=-2.759;QD=2.75;ReadPosRankSum=1.649;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:116,76:192:99:558,0,1606 chrIV 1524526 . T C 423.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.582;DP=183;Dels=0.00;FS=45.122;HaplotypeScore=106.5683;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=2;MQRankSum=-0.207;QD=2.31;ReadPosRankSum=1.851;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,59:183:99:453,0,1572 chrIV 1524527 . G A 395.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.797;DP=182;Dels=0.00;FS=51.412;HaplotypeScore=106.5683;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=2;MQRankSum=0.067;QD=2.17;ReadPosRankSum=1.719;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:123,59:182:99:425,0,1519 chrIV 1524533 . A T 679.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DP=189;Dels=0.00;FS=4.358;HaplotypeScore=118.2251;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=2;MQRankSum=0.151;QD=3.59;ReadPosRankSum=2.781;SB=-3.400e+02 GT:AD:DP:GQ:PL 0/1:118,70:189:99:709,0,1035 chrIV 1524534 . A C 434.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.274;DP=187;Dels=0.00;FS=38.893;HaplotypeScore=114.3094;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=2;MQRankSum=1.266;QD=2.32;ReadPosRankSum=-0.925;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:116,70:187:99:464,0,1310 chrIV 1524536 . A T 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.066;DP=190;Dels=0.00;FS=124.489;HaplotypeScore=114.1047;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=2;MQRankSum=1.226;QD=1.93;ReadPosRankSum=0.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,48:190:99:397,0,1425 chrIV 1524542 . C T 1783.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;DP=190;Dels=0.00;FS=12.322;HaplotypeScore=138.3010;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=2;MQRankSum=-3.032;QD=9.38;ReadPosRankSum=1.676;SB=-1.019e+03 GT:AD:DP:GQ:PL 0/1:20,170:190:99:1813,0,102 chrIV 1524548 . A G 714.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.016;DP=209;Dels=0.00;FS=16.285;HaplotypeScore=36.6904;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=2;MQRankSum=0.471;QD=3.42;ReadPosRankSum=7.863;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:122,87:209:99:744,0,1230 chrIV 1524583 . A T 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;DP=239;Dels=0.00;FS=2.061;HaplotypeScore=103.0662;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=0;MQRankSum=-1.828;QD=0.23;ReadPosRankSum=5.509;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,17:239:86:86,0,1800 chrIV 1524590 . C A 158.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.125;DP=235;Dels=0.00;FS=132.403;HaplotypeScore=218.2471;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=0;MQRankSum=-0.551;QD=0.67;ReadPosRankSum=-0.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,76:235:99:188,0,1437 chrIV 1524595 . G A 913.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.430;DP=223;Dels=0.00;FS=3.248;HaplotypeScore=189.5990;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=2.134;QD=4.09;ReadPosRankSum=1.828;SB=-9.840e+02 GT:AD:DP:GQ:PL 0/1:72,151:223:99:943,0,741 chrIV 1524599 . T C 741.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.218;DP=208;Dels=0.00;FS=28.438;HaplotypeScore=246.6022;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=0;MQRankSum=3.142;QD=3.56;ReadPosRankSum=3.026;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:84,124:208:99:771,0,681 chrIV 1524600 . A G 1696 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.193;DP=205;Dels=0.00;FS=95.675;HaplotypeScore=248.9683;MLEAC=2;MLEAF=1.00;MQ=24.95;MQ0=0;MQRankSum=-0.518;QD=8.27;ReadPosRankSum=2.141;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:49,156:205:99:1729,146,0 chrIV 1524601 . C T 894.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.356;DP=201;Dels=0.00;FS=21.123;HaplotypeScore=190.6966;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=0;MQRankSum=3.935;QD=4.45;ReadPosRankSum=4.497;SB=-7.340e+02 GT:AD:DP:GQ:PL 0/1:73,128:201:99:924,0,575 chrIV 1524606 . A G 785.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.926;DP=196;Dels=0.00;FS=110.058;HaplotypeScore=281.5113;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=0;MQRankSum=4.241;QD=4.01;ReadPosRankSum=2.781;SB=-1.425e+02 GT:AD:DP:GQ:PL 0/1:97,99:196:99:815,0,349 chrIV 1524609 . G A 885.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.967;DP=192;Dels=0.00;FS=256.657;HaplotypeScore=297.0971;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=1;MQRankSum=6.233;QD=4.61;ReadPosRankSum=3.119;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:111,81:192:99:915,0,316 chrIV 1524612 . T C 873.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.628;DP=180;Dels=0.00;FS=137.777;HaplotypeScore=194.2615;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=1;MQRankSum=6.791;QD=4.85;ReadPosRankSum=2.887;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:76,102:180:99:903,0,295 chrIV 1524615 . C A 1002.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=199.7838;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=1;MQRankSum=2.767;QD=5.89;ReadPosRankSum=2.877;SB=-1.032e+03 GT:AD:DP:GQ:PL 0/1:16,150:170:99:1032,0,191 chrIV 1524619 . C T 1030.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DP=167;Dels=0.00;FS=9.436;HaplotypeScore=196.9636;MLEAC=1;MLEAF=0.500;MQ=25.17;MQ0=1;MQRankSum=1.828;QD=6.17;ReadPosRankSum=2.853;SB=-8.510e+02 GT:AD:DP:GQ:PL 0/1:23,143:167:99:1060,0,186 chrIV 1524620 . A T 1059.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;DP=171;Dels=0.00;FS=5.404;HaplotypeScore=211.5852;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=1;MQRankSum=3.444;QD=6.19;ReadPosRankSum=2.998;SB=-5.850e+02 GT:AD:DP:GQ:PL 0/1:17,126:171:99:1089,0,190 chrIV 1524630 . A G 694.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;DP=266;Dels=0.00;FS=156.984;HaplotypeScore=155.6804;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=9;MQRankSum=5.215;QD=2.61;ReadPosRankSum=6.373;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:163,100:266:99:724,0,697 chrIV 1524638 . G T 525.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.761;DP=306;Dels=0.00;FS=433.950;HaplotypeScore=92.4814;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=13;MQRankSum=3.501;QD=1.72;ReadPosRankSum=2.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:216,73:306:99:555,0,1799 chrIV 1524640 . A C 440.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;DP=315;Dels=0.00;FS=457.676;HaplotypeScore=144.6508;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=15;MQRankSum=4.297;QD=1.40;ReadPosRankSum=1.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:244,68:315:99:470,0,1781 chrIV 1524649 . G A 1057.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;DP=330;Dels=0.00;FS=11.783;HaplotypeScore=392.2633;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=17;MQRankSum=1.519;QD=3.20;ReadPosRankSum=1.364;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:241,87:330:99:1087,0,2027 chrIV 1524652 . G A 1337.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.361;DP=333;Dels=0.00;FS=78.532;HaplotypeScore=334.0924;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=18;MQRankSum=1.511;QD=4.02;ReadPosRankSum=-1.443;SB=-1.170e+03 GT:AD:DP:GQ:PL 0/1:179,144:333:99:1367,0,1840 chrIV 1524653 . G A 452.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.970;DP=350;Dels=0.00;FS=12.720;HaplotypeScore=327.9943;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=18;MQRankSum=0.493;QD=1.29;ReadPosRankSum=-1.650;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:165,99:350:99:482,0,2160 chrIV 1524683 . G A 853.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;DP=424;Dels=0.00;FS=5.586;HaplotypeScore=77.3513;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=27;MQRankSum=-4.026;QD=2.01;ReadPosRankSum=-1.745;SB=-5.310e+02 GT:AD:DP:GQ:PL 0/1:259,151:424:99:883,0,3578 chrIV 1524707 . G A 4395.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.878;DP=485;Dels=0.00;FS=87.202;HaplotypeScore=162.6139;MLEAC=1;MLEAF=0.500;MQ=25.08;MQ0=32;MQRankSum=1.313;QD=9.06;ReadPosRankSum=-5.001;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:131,354:485:99:4395,0,1188 chrIV 1524720 . T A 388.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.347;DP=466;Dels=0.00;FS=19.741;HaplotypeScore=107.4501;MLEAC=1;MLEAF=0.500;MQ=24.55;MQ0=32;MQRankSum=3.042;QD=0.83;ReadPosRankSum=-3.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:370,86:466:99:418,0,4023 chrIV 1524726 . G A 549.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=406;Dels=0.00;FS=0.000;HaplotypeScore=94.6699;MLEAC=1;MLEAF=0.500;MQ=24.30;MQ0=28;MQRankSum=-0.846;QD=1.35;ReadPosRankSum=0.931;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:318,86:406:99:579,0,3435 chrIV 1524740 . C T 2993.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.583;DP=343;Dels=0.00;FS=10.502;HaplotypeScore=287.8195;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=21;MQRankSum=5.149;QD=8.73;ReadPosRankSum=-3.545;SB=-8.750e+02 GT:AD:DP:GQ:PL 0/1:78,227:343:99:3023,0,245 chrIV 1524746 . A G 478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;DP=349;Dels=0.00;FS=14.559;HaplotypeScore=481.2914;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=19;MQRankSum=5.075;QD=1.37;ReadPosRankSum=-5.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:307,41:349:99:508,0,2751 chrIV 1524751 . C T 750.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.169;DP=286;Dels=0.01;FS=1.144;HaplotypeScore=353.5943;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=15;MQRankSum=0.636;QD=2.62;ReadPosRankSum=0.892;SB=-3.830e+02 GT:AD:DP:GQ:PL 0/1:132,118:284:99:780,0,1722 chrIV 1524752 . G A 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;DP=288;Dels=0.01;FS=43.546;HaplotypeScore=327.4678;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=15;MQRankSum=1.544;QD=0.47;ReadPosRankSum=-1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,57:286:99:166,0,2471 chrIV 1524776 . G T 1126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.340;DP=260;Dels=0.00;FS=12.616;HaplotypeScore=131.5434;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=25;MQRankSum=0.710;QD=4.33;ReadPosRankSum=-0.943;SB=-3.360e+02 GT:AD:DP:GQ:PL 0/1:162,97:260:99:1156,0,1328 chrIV 1524779 . T A 1495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.391;DP=257;Dels=0.00;FS=1.271;HaplotypeScore=122.7728;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=25;MQRankSum=-1.740;QD=5.82;ReadPosRankSum=0.947;SB=-9.760e+02 GT:AD:DP:GQ:PL 0/1:66,191:257:99:1525,0,882 chrIV 1524792 . G A 889.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.037;DP=289;Dels=0.00;FS=50.450;HaplotypeScore=246.9374;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=23;MQRankSum=2.678;QD=3.08;ReadPosRankSum=2.152;SB=-2.870e+02 GT:AD:DP:GQ:PL 0/1:204,83:289:99:919,0,1287 chrIV 1524798 . C T 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;DP=287;Dels=0.00;FS=4.294;HaplotypeScore=215.6683;MLEAC=1;MLEAF=0.500;MQ=21.46;MQ0=24;MQRankSum=1.945;QD=0.54;ReadPosRankSum=-0.613;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:239,40:287:99:184,0,1902 chrIV 1524799 . G A 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.486;DP=291;Dels=0.00;FS=13.379;HaplotypeScore=219.0238;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=25;MQRankSum=-2.282;QD=0.18;ReadPosRankSum=-2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:222,52:291:83:83,0,2075 chrIV 1524838 . G T 379.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=10.156;DP=588;Dels=0.00;FS=10.940;HaplotypeScore=224.5337;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=29;MQRankSum=6.340;QD=0.64;ReadPosRankSum=0.011;SB=-3.430e+02 GT:AD:DP:GQ:PL 0/1:493,71:588:99:409,0,4654 chrIV 1524886 . T C 7056.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.271;DP=523;Dels=0.00;FS=29.460;HaplotypeScore=45.7543;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=18;MQRankSum=-2.141;QD=13.49;ReadPosRankSum=6.836;SB=-2.997e+03 GT:AD:DP:GQ:PL 1/1:17,494:523:99:7056,844,0 chrIV 1524889 . A G 132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;DP=536;Dels=0.00;FS=2.605;HaplotypeScore=195.0967;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=21;MQRankSum=1.995;QD=0.25;ReadPosRankSum=3.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:480,56:536:99:162,0,5430 chrIV 1524897 . G A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;DP=530;Dels=0.00;FS=53.997;HaplotypeScore=469.2481;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=16;MQRankSum=-0.936;QD=0.12;ReadPosRankSum=2.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:424,77:530:92:92,0,5338 chrIV 1524898 . A G 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.378;DP=520;Dels=0.00;FS=80.305;HaplotypeScore=471.6167;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=15;MQRankSum=4.296;QD=0.16;ReadPosRankSum=-1.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:464,55:520:99:111,0,5535 chrIV 1524901 . G A 497.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=444;Dels=0.00;FS=25.314;HaplotypeScore=394.5064;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=15;MQRankSum=-3.078;QD=1.12;ReadPosRankSum=3.530;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:331,113:444:99:527,0,4399 chrIV 1524915 . T G 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;DP=342;Dels=0.00;FS=135.713;HaplotypeScore=355.3544;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=15;MQRankSum=3.779;QD=0.35;ReadPosRankSum=3.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:282,47:342:99:150,0,3983 chrIV 1524916 . T A 357.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.867;DP=339;Dels=0.00;FS=75.282;HaplotypeScore=346.6138;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=15;MQRankSum=5.024;QD=1.05;ReadPosRankSum=2.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:276,62:339:99:387,0,3645 chrIV 1524937 . G T 397.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.194;DP=312;Dels=0.04;FS=55.831;HaplotypeScore=270.9858;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=18;MQRankSum=3.482;QD=1.27;ReadPosRankSum=-1.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:254,45:299:99:427,0,2584 chrIV 1524938 . T C 220.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.148;DP=313;Dels=0.01;FS=1.443;HaplotypeScore=251.9511;MLEAC=1;MLEAF=0.500;MQ=25.30;MQ0=18;MQRankSum=1.000;QD=0.70;ReadPosRankSum=4.504;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:264,43:311:99:250,0,2768 chrIV 1524943 . T G 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;DP=317;Dels=0.01;FS=0.000;HaplotypeScore=308.2079;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=15;MQRankSum=-0.078;QD=0.71;ReadPosRankSum=3.298;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:266,45:315:99:256,0,2760 chrIV 1524944 . G A 963.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.711;DP=314;Dels=0.01;FS=171.400;HaplotypeScore=290.2522;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=15;MQRankSum=1.013;QD=3.07;ReadPosRankSum=1.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:199,111:312:99:993,0,2151 chrIV 1524989 . T C 533.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.394;DP=325;Dels=0.00;FS=81.300;HaplotypeScore=105.0973;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=10;MQRankSum=3.011;QD=1.64;ReadPosRankSum=5.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:269,56:325:99:563,0,3168 chrIV 1525003 . G C 1619.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.691;DP=378;Dels=0.00;FS=4.403;HaplotypeScore=225.4001;MLEAC=1;MLEAF=0.500;MQ=25.48;MQ0=14;MQRankSum=-1.617;QD=4.28;ReadPosRankSum=-0.888;SB=-4.390e+02 GT:AD:DP:GQ:PL 0/1:181,149:377:99:1649,0,1788 chrIV 1525031 . A G 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.748;DP=371;Dels=0.00;FS=24.634;HaplotypeScore=208.1164;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=12;MQRankSum=-1.911;QD=1.55;ReadPosRankSum=2.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:271,100:371:99:606,0,2999 chrIV 1525071 . G A 348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.470;DP=273;Dels=0.00;FS=84.592;HaplotypeScore=283.6789;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=8;MQRankSum=0.008;QD=1.27;ReadPosRankSum=-0.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:184,89:273:99:378,0,1608 chrIV 1525098 . G A 459.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.348;DP=185;Dels=0.00;FS=28.790;HaplotypeScore=145.2459;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=5;MQRankSum=-4.080;QD=2.48;ReadPosRankSum=2.733;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:63,118:185:99:489,0,619 chrIV 1525100 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.490;DP=183;Dels=0.03;FS=6.354;HaplotypeScore=195.7110;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=3;MQRankSum=3.088;QD=0.20;ReadPosRankSum=-2.446;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:157,20:177:66:66,0,1022 chrIV 1525125 . T C 1586 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=113.4777;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=9.06;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,175:175:99:1619,195,0 chrIV 1525131 . G A 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;DP=192;Dels=0.00;FS=27.236;HaplotypeScore=267.3658;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=0;MQRankSum=-2.027;QD=0.60;ReadPosRankSum=0.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,77:192:99:145,0,1140 chrIV 1525140 . T C 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=197;Dels=0.00;FS=15.082;HaplotypeScore=347.4875;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=0;MQRankSum=-4.455;QD=0.49;ReadPosRankSum=0.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,51:197:99:126,0,926 chrIV 1525141 . A G 913.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;DP=197;Dels=0.00;FS=34.177;HaplotypeScore=336.9765;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=0;MQRankSum=4.557;QD=4.63;ReadPosRankSum=3.413;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:114,83:197:99:943,0,314 chrIV 1525147 . G T 265.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;DP=190;Dels=0.00;FS=44.992;HaplotypeScore=290.5375;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=0;MQRankSum=-4.045;QD=1.39;ReadPosRankSum=-0.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,101:190:99:295,0,945 chrIV 1525148 . A G 248.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DP=187;Dels=0.01;FS=22.409;HaplotypeScore=289.8724;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=0;MQRankSum=-3.022;QD=1.33;ReadPosRankSum=-2.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:109,77:186:99:278,0,918 chrIV 1525167 . A G 755.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.119;DP=268;Dels=0.00;FS=34.834;HaplotypeScore=160.9817;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=1;MQRankSum=5.208;QD=2.82;ReadPosRankSum=6.794;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:196,72:268:99:785,0,642 chrIV 1525186 . A T 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.477;DP=292;Dels=0.00;FS=2.260;HaplotypeScore=192.4108;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=3;MQRankSum=3.583;QD=0.21;ReadPosRankSum=0.263;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:246,46:292:91:91,0,1632 chrIV 1525187 . A G 185.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364;DP=293;Dels=0.00;FS=4.661;HaplotypeScore=181.7501;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=3;MQRankSum=0.086;QD=0.63;ReadPosRankSum=-1.253;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:223,66:293:99:215,0,1483 chrIV 1525190 . G A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;DP=294;Dels=0.00;FS=0.000;HaplotypeScore=161.3802;MLEAC=1;MLEAF=0.500;MQ=21.56;MQ0=3;MQRankSum=4.636;QD=0.06;ReadPosRankSum=1.903;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,30:294:49:49,0,1673 chrIV 1525206 . G C 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.567;DP=283;Dels=0.01;FS=0.000;HaplotypeScore=505.1335;MLEAC=1;MLEAF=0.500;MQ=21.42;MQ0=4;MQRankSum=3.971;QD=0.56;ReadPosRankSum=1.818;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:235,39:279:99:189,0,1319 chrIV 1525220 . T G 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=690.0933;MLEAC=1;MLEAF=0.500;MQ=21.08;MQ0=4;MQRankSum=-1.444;QD=0.57;ReadPosRankSum=2.146;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:185,40:259:99:177,0,1127 chrIV 1525221 . G A 671.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;DP=258;Dels=0.00;FS=0.000;HaplotypeScore=693.3187;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=4;MQRankSum=0.354;QD=2.60;ReadPosRankSum=-0.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:156,98:258:99:701,0,583 chrIV 1525226 . T C 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.275;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=699.7215;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=3;MQRankSum=-2.813;QD=0.26;ReadPosRankSum=1.877;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:226,35:261:97:97,0,1189 chrIV 1525255 . G A 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=179.4263;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=4;MQRankSum=0.151;QD=1.20;ReadPosRankSum=-0.498;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,124:219:99:293,0,629 chrIV 1525263 . A G 1309 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.067;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=230.3561;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=3;MQRankSum=2.862;QD=6.42;ReadPosRankSum=2.778;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:31,173:204:73:1342,73,0 chrIV 1525272 . A G 1118 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.013;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=97.1216;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=2;MQRankSum=2.192;QD=6.58;ReadPosRankSum=1.690;SB=-8.252e-03 GT:AD:DP:GQ:PL 1/1:18,152:170:37:1151,37,0 chrIV 1525274 . T A 1284 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;DP=167;Dels=0.00;FS=13.396;HaplotypeScore=124.2870;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=2;MQRankSum=1.314;QD=7.69;ReadPosRankSum=1.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,148:167:99:1317,156,0 chrIV 1525284 . G A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=151.5926;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=1;MQRankSum=-1.481;QD=0.30;ReadPosRankSum=-2.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,37:162:79:79,0,930 chrIV 1525290 . G A 431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=112.8930;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=0;MQRankSum=0.355;QD=2.95;ReadPosRankSum=1.670;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:61,69:146:99:461,0,235 chrIV 1525313 . T G 615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.129;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=102.7518;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=0;MQRankSum=1.194;QD=6.47;ReadPosRankSum=0.576;SB=-2.600e+01 GT:AD:DP:GQ:PL 1/1:10,85:95:44:648,44,0 chrIV 1525316 . G C 253.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=107.1855;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=0;MQRankSum=4.014;QD=2.75;ReadPosRankSum=3.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,28:92:99:283,0,202 chrIV 1525331 . C T 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=11.4296;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=-0.352;QD=1.04;ReadPosRankSum=-2.947;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,10:51:83:83,0,299 chrIV 1525335 . C G 464 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.4296;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;QD=9.67;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:60:497,60,0 chrIV 1525340 . C A 169.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=6.0667;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;QD=6.50;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,25:26:24:202,24,0 chrIV 1525343 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=1.542;QD=2.50;ReadPosRankSum=-0.578;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:77,9,0 chrIV 1525344 . T G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.349;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=1.542;QD=2.55;ReadPosRankSum=-0.578;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:78,9,0 chrIV 1525345 . C G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=7.8000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=1.542;QD=2.55;ReadPosRankSum=-0.578;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:78,9,0 chrIV 1525346 . T A 20.10 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=8.6667;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=1.531;QD=1.12;ReadPosRankSum=-0.510;SB=14.93 GT:AD:DP:GQ:PL 1/1:1,16:18:6:51,6,0 chrIV 1525357 . C A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=1.49;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:16:6:55,6,0 chrIV 1525472 . A C 150.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.9453;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;MQRankSum=-1.107;QD=13.64;ReadPosRankSum=1.423;SB=-5.094e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:21:183,21,0 chrIV 1525481 . T C 147.06 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;QD=14.71;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:180,21,0 chrIV 1525482 . G T 148.06 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=0;QD=14.81;SB=-5.104e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:181,21,0 chrIX 19609 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=21.76;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1730,198,0 chrIX 19891 . C A 394.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;DP=133;Dels=0.00;FS=114.502;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=35.16;MQ0=10;MQRankSum=-2.104;QD=2.96;ReadPosRankSum=-1.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,48:133:99:424,0,1282 chrIX 19966 . T C 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;DP=100;Dels=0.00;FS=76.951;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=42.92;MQ0=1;MQRankSum=-1.743;QD=1.89;ReadPosRankSum=0.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,25:100:99:219,0,1307 chrIX 20039 . A C 2119 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=1;QD=19.62;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2152,243,0 chrIX 20218 . C T 449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DP=131;Dels=0.00;FS=36.648;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=32.73;MQ0=14;MQRankSum=-1.105;QD=3.43;ReadPosRankSum=-3.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,44:131:99:479,0,1294 chrIX 20260 . G A 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;DP=162;Dels=0.00;FS=74.506;HaplotypeScore=8.0083;MLEAC=1;MLEAF=0.500;MQ=29.26;MQ0=13;MQRankSum=-5.517;QD=2.00;ReadPosRankSum=-4.042;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:98,64:162:99:354,0,1354 chrIX 20325 . A G 1003 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=110;Dels=0.00;FS=7.080;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=18;MQRankSum=-1.299;QD=9.12;ReadPosRankSum=2.369;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1036,123,0 chrIX 20332 . A T 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;DP=107;Dels=0.00;FS=15.048;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=29.56;MQ0=17;MQRankSum=-1.382;QD=2.65;ReadPosRankSum=2.647;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:77,30:107:99:314,0,380 chrIX 20341 . C T 491.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;DP=114;Dels=0.00;FS=10.612;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=37.04;MQ0=17;MQRankSum=4.174;QD=4.31;ReadPosRankSum=-1.288;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:28,86:114:99:521,0,235 chrIX 20356 . T C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;DP=117;Dels=0.00;FS=34.020;HaplotypeScore=2.2859;MLEAC=1;MLEAF=0.500;MQ=41.06;MQ0=16;MQRankSum=-4.388;QD=0.74;ReadPosRankSum=-1.686;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,21:117:99:116,0,1282 chrIX 20494 . A G 1767 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=108;Dels=0.00;FS=6.781;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=5;MQRankSum=-2.136;QD=16.36;ReadPosRankSum=2.329;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:1800,207,0 chrIX 20611 . C T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DP=135;Dels=0.00;FS=56.868;HaplotypeScore=11.6303;MLEAC=1;MLEAF=0.500;MQ=35.66;MQ0=2;MQRankSum=-4.933;QD=0.24;ReadPosRankSum=0.777;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,23:135:62:62,0,1420 chrIX 20698 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;DP=77;Dels=0.00;FS=32.212;HaplotypeScore=5.6253;MLEAC=1;MLEAF=0.500;MQ=32.61;MQ0=4;MQRankSum=-0.874;QD=0.92;ReadPosRankSum=1.521;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,16:77:99:101,0,649 chrIX 20713 . C G 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DP=85;Dels=0.00;FS=21.091;HaplotypeScore=5.5186;MLEAC=1;MLEAF=0.500;MQ=38.88;MQ0=6;MQRankSum=-2.246;QD=0.28;ReadPosRankSum=1.868;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,14:85:54:54,0,784 chrIX 20866 . G C 2028 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=2;QD=20.91;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2061,234,0 chrIX 20889 . C T 1735 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=7;QD=21.42;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1768,195,0 chrIX 21121 . G A 288 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=2;QD=12.52;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:2,21:23:36:321,36,0 chrIX 21133 . G A 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=2;QD=11.68;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:39:360,39,0 chrIX 21139 . G A 347 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=2;QD=11.57;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:2,28:30:42:380,42,0 chrIX 21142 . G A 397 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=2;QD=12.03;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,31:33:45:430,45,0 chrIX 21145 . A G 377 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=2;QD=10.47;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:2,34:36:45:410,45,0 chrIX 21151 . C T 399 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=2;QD=10.78;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:2,35:37:48:432,48,0 chrIX 21185 . A G 369 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=8;MQRankSum=-0.609;QD=8.20;ReadPosRankSum=1.639;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:8,37:45:45:402,45,0 chrIX 21234 . G A 152.06 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=14;QD=4.34;SB=-7.495e-02 GT:AD:DP:GQ:PL 1/1:13,22:35:21:185,21,0 chrIX 21239 . A G 147.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=10.4342;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=17;MQRankSum=-1.542;QD=4.20;ReadPosRankSum=1.542;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:17,18:35:21:180,21,0 chrIX 21741 . A G 72.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=2;QD=12.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:105,12,0 chrIX 21742 . A G 74.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=2;QD=12.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:107,12,0 chrIX 22175 . A T 93.26 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=2;QD=13.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:15:126,15,0 chrIX 23635 . T G 43.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;QD=1.57;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:9:76,9,0 chrIX 23638 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;QD=1.65;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:9:80,9,0 chrIX 23662 . A G 109.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=41.67;MQ0=0;MQRankSum=-5.623;QD=1.38;ReadPosRankSum=-1.098;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:36,40:79:99:139,0,655 chrIX 23677 . T G 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-1.025;QD=14.92;ReadPosRankSum=2.363;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:99:1734,195,0 chrIX 23764 . G A 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=105;Dels=0.00;FS=2.311;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=2.202;QD=14.77;ReadPosRankSum=3.265;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:6,99:105:99:1584,177,0 chrIX 23779 . G C 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;DP=88;Dels=0.00;FS=21.913;HaplotypeScore=5.7489;MLEAC=1;MLEAF=0.500;MQ=40.68;MQ0=0;MQRankSum=4.671;QD=3.13;ReadPosRankSum=2.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,33:88:99:305,0,525 chrIX 23788 . A G 475.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;DP=84;Dels=0.00;FS=30.254;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=0;MQRankSum=-4.187;QD=5.65;ReadPosRankSum=0.201;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:30,54:84:99:505,0,297 chrIX 23794 . G A 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;DP=92;Dels=0.00;FS=53.834;HaplotypeScore=4.3288;MLEAC=1;MLEAF=0.500;MQ=37.15;MQ0=0;MQRankSum=5.110;QD=2.85;ReadPosRankSum=-1.874;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,29:92:99:292,0,602 chrIX 23803 . G A 570.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;DP=84;Dels=0.00;FS=40.644;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.52;MQ0=0;MQRankSum=-4.184;QD=6.79;ReadPosRankSum=3.884;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:21,63:84:99:600,0,106 chrIX 23806 . T A 629.06 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;QD=7.67;SB=-6.811e+02 GT:AD:DP:GQ:PL 1/1:0,65:82:81:662,81,0 chrIX 23812 . G A 785 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=88;Dels=0.00;FS=29.309;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=-0.866;QD=8.92;ReadPosRankSum=4.440;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:13,72:88:96:818,96,0 chrIX 24157 . G T 1547 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=15.95;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1580,180,0 chrIX 24160 . A C 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=15.39;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1541,180,0 chrIX 24163 . G A 1550 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7627;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=14.76;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1583,180,0 chrIX 24197 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=16.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2220,249,0 chrIX 25066 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8804;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.20;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2030,228,0 chrIX 25228 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.66;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2254,246,0 chrIX 25392 . C A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;DP=78;Dels=0.00;FS=34.790;HaplotypeScore=6.9647;MLEAC=1;MLEAF=0.500;MQ=54.00;MQ0=0;MQRankSum=-1.825;QD=1.37;ReadPosRankSum=-4.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,16:78:99:137,0,1242 chrIX 25393 . T A 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;DP=80;Dels=0.00;FS=34.417;HaplotypeScore=9.9443;MLEAC=1;MLEAF=0.500;MQ=53.65;MQ0=0;MQRankSum=-3.601;QD=1.73;ReadPosRankSum=-4.649;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,18:80:99:168,0,1224 chrIX 25418 . T C 1025.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;DP=96;Dels=0.00;FS=41.064;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=53.64;MQ0=0;MQRankSum=0.580;QD=10.68;ReadPosRankSum=4.528;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:31,65:96:99:1055,0,401 chrIX 25425 . T C 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;DP=94;Dels=0.00;FS=33.536;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=0;MQRankSum=1.806;QD=1.31;ReadPosRankSum=-4.291;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,16:94:99:153,0,1009 chrIX 25426 . A T 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=94;Dels=0.00;FS=37.795;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=0;MQRankSum=1.880;QD=0.90;ReadPosRankSum=-5.063;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,16:94:99:115,0,1076 chrIX 25456 . G T 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DP=79;Dels=0.00;FS=15.844;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=4.074;QD=3.86;ReadPosRankSum=0.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,25:79:99:335,0,717 chrIX 25498 . T G 462.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=71;Dels=0.00;FS=7.509;HaplotypeScore=11.4646;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=0;MQRankSum=-3.837;QD=6.51;ReadPosRankSum=2.545;SB=-4.778e+02 GT:AD:DP:GQ:PL 0/1:8,63:71:49:492,0,49 chrIX 25502 . T C 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;DP=72;Dels=0.00;FS=1.112;HaplotypeScore=11.6749;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=0;MQRankSum=-0.441;QD=0.81;ReadPosRankSum=-3.509;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:52,20:72:88:88,0,410 chrIX 25513 . A G 744 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=11.45;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:90:777,90,0 chrIX 25544 . T C 946 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;QD=12.61;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:979,111,0 chrIX 25582 . G T 98.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;DP=48;Dels=0.00;FS=12.587;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=1.687;QD=2.04;ReadPosRankSum=-2.882;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:31,17:48:99:128,0,403 chrIX 25602 . C A 167.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=0;MQRankSum=-0.355;QD=9.28;ReadPosRankSum=2.369;SB=-1.110e+00 GT:AD:DP:GQ:PL 1/1:3,15:18:1:196,1,0 chrIX 25603 . T A 167.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=0;MQRankSum=-0.355;QD=9.28;ReadPosRankSum=2.369;SB=-1.113e+00 GT:AD:DP:GQ:PL 1/1:3,15:18:1:196,1,0 chrIX 25628 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=0;MQRankSum=-0.453;QD=1.83;ReadPosRankSum=-2.174;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:7,11:18:54:63,0,54 chrIX 25635 . C T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=0;MQRankSum=1.386;QD=2.90;ReadPosRankSum=-1.580;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:7,3:10:59:59,0,61 chrIX 25636 . T A 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=0;MQRankSum=1.580;QD=2.40;ReadPosRankSum=-1.580;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:7,3:10:54:54,0,84 chrIX 25666 . T G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=1;QD=1.00;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:45,6,0 chrIX 25681 . A G 98.26 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=1;QD=4.09;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,23:24:15:131,15,0 chrIX 25712 . T C 678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=2;MQRankSum=-1.984;QD=12.33;ReadPosRankSum=2.357;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,53:55:81:711,81,0 chrIX 25750 . G T 831.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;DP=85;Dels=0.00;FS=33.126;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.42;MQ0=1;MQRankSum=3.905;QD=9.78;ReadPosRankSum=-1.963;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:22,63:85:94:861,0,94 chrIX 25765 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=1;QD=14.66;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1396,156,0 chrIX 25867 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.41;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2319,252,0 chrIX 26226 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=2.709;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=-0.496;QD=19.22;ReadPosRankSum=2.393;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1705,198,0 chrIX 26294 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.90;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1747,192,0 chrIX 26381 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.40;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:990,111,0 chrIX 26499 . T A 1267 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=17.60;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1300,141,0 chrIX 26507 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=16.99;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1171,132,0 chrIX 26556 . C G 555 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=9.91;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:66:588,66,0 chrIX 26564 . A G 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;MQRankSum=-1.676;QD=9.36;ReadPosRankSum=1.621;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:72:632,72,0 chrIX 26575 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.30;MQ0=0;QD=9.84;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:78:692,78,0 chrIX 26591 . T A 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=4.199;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;MQRankSum=-1.683;QD=11.70;ReadPosRankSum=1.683;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:96:864,96,0 chrIX 26620 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=14.11;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:894,102,0 chrIX 26667 . T C 656 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=14.91;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:689,81,0 chrIX 26668 . C T 645 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=14.66;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:78:678,78,0 chrIX 26686 . A G 496 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=13.41;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:529,63,0 chrIX 26716 . G A 350 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=12.07;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:383,45,0 chrIX 26728 . C T 281 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.04;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:314,39,0 chrIX 26761 . T C 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=5.740;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;MQRankSum=-0.116;QD=19.60;ReadPosRankSum=1.504;SB=-6.500e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:39:327,39,0 chrIX 26783 . G C 337 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=16.85;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:370,42,0 chrIX 26788 . A G 412 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=17.91;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:51:445,51,0 chrIX 26801 . T C 446 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=16.52;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:54:479,54,0 chrIX 26833 . A G 661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;MQRankSum=-1.022;QD=16.95;ReadPosRankSum=1.555;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:78:694,78,0 chrIX 26856 . A G 748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-1.320;QD=16.26;ReadPosRankSum=2.343;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:87:781,87,0 chrIX 26915 . C T 649 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=14.75;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:682,81,0 chrIX 26982 . C T 605 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=15.51;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:638,72,0 chrIX 27023 . A G 482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=8.893;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;MQRankSum=-1.062;QD=15.55;ReadPosRankSum=1.621;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:60:515,60,0 chrIX 27046 . A G 486 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=15.19;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:60:519,60,0 chrIX 27054 . A G 421 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=14.03;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:454,54,0 chrIX 27068 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=12.90;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:420,48,0 chrIX 27090 . A G 247 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=9.15;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:280,33,0 chrIX 27096 . A T 241 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=9.27;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:274,33,0 chrIX 27099 . C T 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=5.37;SB=-1.161e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:151,18,0 chrIX 27108 . A G 164.03 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=7.46;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:197,24,0 chrIX 27114 . A C 79.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=4.17;SB=-1.143e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:15:112,15,0 chrIX 27118 . C T 143.06 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=6.81;SB=-1.411e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:176,21,0 chrIX 27129 . A G 140.06 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.60;SB=-1.921e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:173,21,0 chrIX 27132 . C G 134.06 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=4.62;SB=-1.901e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:21:167,21,0 chrIX 27219 . A G 499 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;QD=17.21;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:532,60,0 chrIX 27224 . G A 318 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=26;Dels=0.00;FS=3.736;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;MQRankSum=-1.600;QD=12.23;ReadPosRankSum=1.200;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:42:351,42,0 chrIX 27227 . A G 255 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=23;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;MQRankSum=-1.583;QD=11.09;ReadPosRankSum=0.829;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:33:288,33,0 chrIX 27230 . A G 214.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.734;QD=10.19;ReadPosRankSum=0.347;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,19:21:27:247,27,0 chrIX 27241 . G A 243 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=13.50;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,17:18:30:276,30,0 chrIX 27378 . C A 883 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.40;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:916,105,0 chrIX 27571 . G T 205.01 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=3.87;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:27:238,27,0 chrIX 27688 . T A 1164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=16.87;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1197,138,0 chrIX 27707 . G T 1027 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=15.56;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1060,117,0 chrIX 27757 . T G 1173 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=16.76;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1206,138,0 chrIX 27959 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=46.5096;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=15.82;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:919,102,0 chrIX 27963 . C A 845 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=48.5538;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=15.09;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:878,99,0 chrIX 27994 . T C 940 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=14.92;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:973,108,0 chrIX 28070 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=14.45;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1189,138,0 chrIX 28077 . A T 982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-0.192;QD=13.64;ReadPosRankSum=1.684;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1015,111,0 chrIX 28108 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=15.46;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1239,138,0 chrIX 28371 . C T 425 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=15.18;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:51:458,51,0 chrIX 28464 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.24;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1033,114,0 chrIX 28989 . G C 2095 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.58;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2128,240,0 chrIX 29044 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6018;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.11;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1803,204,0 chrIX 29074 . T G 1454 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=15.47;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1487,168,0 chrIX 29079 . G T 1473 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=14.58;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1506,165,0 chrIX 29094 . A T 1055 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=12.56;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1088,126,0 chrIX 29124 . G T 1456 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7779;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=15.83;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1489,159,0 chrIX 29193 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.24;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1812,201,0 chrIX 29414 . G T 2757 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.41;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2790,318,0 chrIX 29472 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.88;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2223,249,0 chrIX 29565 . G A 2361 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.71;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2394,279,0 chrIX 29619 . T G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=2.780;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.072;QD=19.95;ReadPosRankSum=2.192;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1749,198,0 chrIX 29628 . G C 1707 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.82;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1740,195,0 chrIX 29725 . T C 1900 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.89;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1933,216,0 chrIX 29750 . C G 1825 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.6203;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.51;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1858,210,0 chrIX 29781 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.16;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2227,237,0 chrIX 29856 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.66;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1724,192,0 chrIX 29928 . T G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=8.473;HaplotypeScore=4.6924;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.335;QD=18.86;ReadPosRankSum=2.396;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1768,201,0 chrIX 30093 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.53;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1751,189,0 chrIX 30282 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.99;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1512,171,0 chrIX 30326 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=13.2407;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.05;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1874,204,0 chrIX 30416 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=5.855;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-1.057;QD=23.50;ReadPosRankSum=1.597;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1866,216,0 chrIX 30537 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=22.08;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1137,126,0 chrIX 30598 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=17.14;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1421,156,0 chrIX 30599 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=17.36;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1422,159,0 chrIX 30609 . A C 1358 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=15.98;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1391,162,0 chrIX 30672 . C G 399 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=7.00;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:51:432,51,0 chrIX 30688 . A C 458 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=8.81;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:54:491,54,0 chrIX 30792 . A G 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=65;Dels=0.00;FS=22.191;HaplotypeScore=5.9530;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=-0.369;QD=8.82;ReadPosRankSum=3.285;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:8,57:65:69:606,69,0 chrIX 30845 . C T 470 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=7.97;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:54:503,54,0 chrIX 31082 . A T 1899 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.35;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1932,216,0 chrIX 31217 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.94;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2483,285,0 chrIX 31904 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1639,180,0 chrIX 31948 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.75;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1356,147,0 chrIX 32504 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.04;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1355,153,0 chrIX 32693 . G C 2325 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.48;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2358,267,0 chrIX 32809 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.29;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1972,222,0 chrIX 32963 . C G 2360 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=16.6575;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.44;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,123:128:99:2393,273,0 chrIX 33143 . A T 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-0.150;QD=17.57;ReadPosRankSum=2.317;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1368,150,0 chrIX 33147 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.76;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1384,153,0 chrIX 33455 . T C 646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;MQRankSum=1.559;QD=16.15;ReadPosRankSum=1.646;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:81:679,81,0 chrIX 33460 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=13.91;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:645,72,0 chrIX 33484 . A G 573 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=10.61;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:606,69,0 chrIX 33485 . T C 544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;MQRankSum=0.304;QD=9.54;ReadPosRankSum=2.770;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:66:577,66,0 chrIX 33510 . A G 535 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.92;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:63:568,63,0 chrIX 33515 . C A 479 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=6.94;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:60:512,60,0 chrIX 33529 . T G 467 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=6.49;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:57:500,57,0 chrIX 33531 . A G 482 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=6.69;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:57:515,57,0 chrIX 33548 . T G 355 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=5.46;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:45:388,45,0 chrIX 33549 . G T 376 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=5.45;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:45:409,45,0 chrIX 33562 . G T 862 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=9.47;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:895,102,0 chrIX 33599 . A T 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-1.299;QD=13.37;ReadPosRankSum=-0.144;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1637,183,0 chrIX 33620 . C T 2561 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.9097;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.26;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2594,282,0 chrIX 33702 . T C 2420 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.96;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2453,276,0 chrIX 33811 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=19.86;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1642,177,0 chrIX 33820 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=18.41;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1469,168,0 chrIX 33870 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=17.35;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1942,216,0 chrIX 34009 . T C 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=143;Dels=0.00;FS=7.319;HaplotypeScore=13.6703;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=0.654;QD=19.13;ReadPosRankSum=2.293;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2769,321,0 chrIX 34088 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.16;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2255,255,0 chrIX 34351 . A G 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=128;Dels=0.00;FS=7.874;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.258;QD=19.41;ReadPosRankSum=2.373;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2517,291,0 chrIX 35042 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=15.69;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1194,138,0 chrIX 35111 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.69;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1590,180,0 chrIX 35118 . C G 1681 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.47;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1714,192,0 chrIX 35226 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1787,195,0 chrIX 35446 . T A 1739 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.47;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1772,195,0 chrIX 35770 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.74;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1632,186,0 chrIX 35910 . T G 1618 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.81;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1651,189,0 chrIX 36018 . C A 1745 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.81;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1778,195,0 chrIX 36317 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0011;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.85;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1826,204,0 chrIX 36580 . A C 1325 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.91;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1358,156,0 chrIX 36602 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=16.64;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1048,114,0 chrIX 36609 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=15.30;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:905,99,0 chrIX 36639 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4477;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=14.43;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:913,99,0 chrIX 36653 . C T 758 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=12.23;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:87:791,87,0 chrIX 37520 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.01;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2357,264,0 chrIX 37634 . A C 1945 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.91;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1978,225,0 chrIX 37646 . C G 1856 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=15.73;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:1889,219,0 chrIX 37771 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.32;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2378,261,0 chrIX 37822 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2430,276,0 chrIX 38467 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.679;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.089;QD=19.75;ReadPosRankSum=2.379;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1396,156,0 chrIX 38488 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.61;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1484,171,0 chrIX 39822 . G A 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.619;QD=21.66;ReadPosRankSum=1.670;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1246,115,0 chrIX 40145 . G A 3342.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.76;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3342,378,0 chrIX 40190 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:108:99:2469,279,0 chrIX 40512 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.28;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1565,174,0 chrIX 41108 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.80;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1971,213,0 chrIX 41223 . A G 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.318;QD=16.31;ReadPosRankSum=2.394;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1501,174,0 chrIX 41352 . T C 970 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.32;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1003,114,0 chrIX 41415 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=14.87;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1089,126,0 chrIX 41439 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.350;QD=15.42;ReadPosRankSum=2.150;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1174,135,0 chrIX 41532 . A G 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=68;Dels=0.00;FS=5.378;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.977;QD=18.07;ReadPosRankSum=3.323;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1262,144,0 chrIX 41898 . T C 873 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.79;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:906,102,0 chrIX 41980 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.82;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1352,156,0 chrIX 42365 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1020,114,0 chrIX 42679 . T C 835 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.77;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:868,99,0 chrIX 42901 . G T 1275 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1308,147,0 chrIX 43493 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.68;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1563,174,0 chrIX 43644 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1558,174,0 chrIX 44092 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:90:829,90,0 chrIX 44134 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:99:904,102,0 chrIX 44230 . A T 918 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.86;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:951,108,0 chrIX 44284 . A G 1038 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.21;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1071,126,0 chrIX 44293 . G A 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=7.324;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.064;QD=18.07;ReadPosRankSum=-0.577;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1009,114,0 chrIX 44308 . C T 887 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.13;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:920,102,0 chrIX 44331 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.84;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:993,108,0 chrIX 44618 . A C 1671 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.16;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1704,195,0 chrIX 44620 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.73;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1737,189,0 chrIX 44734 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.50;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1485,168,0 chrIX 44800 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.08;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2318,255,0 chrIX 44944 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.71;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1413,162,0 chrIX 44979 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.93;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1498,171,0 chrIX 45115 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1629,183,0 chrIX 45203 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1126,129,0 chrIX 45244 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.90;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1071,123,0 chrIX 45367 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.52;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1346,147,0 chrIX 45530 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5238;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.24;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2118,234,0 chrIX 45559 . A C 2275 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.70;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2308,264,0 chrIX 45691 . T G 1539 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.52;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1572,177,0 chrIX 45705 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.63;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1504,162,0 chrIX 45746 . A G 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=54;Dels=0.00;FS=3.090;HaplotypeScore=8.8441;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.071;QD=18.98;ReadPosRankSum=2.355;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:2,50:54:99:1058,120,0 chrIX 45805 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.01;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1588,180,0 chrIX 45859 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=6.6305;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.60;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2107,231,0 chrIX 46057 . C G 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.391;QD=19.26;ReadPosRankSum=1.439;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1420,165,0 chrIX 46102 . C A 1374 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.51;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1407,150,0 chrIX 46170 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.63;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1356,153,0 chrIX 46174 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.65;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1410,159,0 chrIX 46189 . T C 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.655;QD=16.56;ReadPosRankSum=1.617;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1523,174,0 chrIX 46556 . C T 2314 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.37;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2347,255,0 chrIX 47036 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.21;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:955,105,0 chrIX 47054 . G T 778 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.68;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:811,90,0 chrIX 47868 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1319,147,0 chrIX 47916 . T C 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.893;QD=19.46;ReadPosRankSum=1.623;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1882,216,0 chrIX 48216 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0880;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1752,195,0 chrIX 48813 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8545;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.83;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2353,267,0 chrIX 48876 . A C 1889 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=15.23;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1922,222,0 chrIX 48879 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.72;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1989,219,0 chrIX 49521 . G A 465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.321;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=56.0164;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=-0.748;QD=5.74;ReadPosRankSum=-1.133;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:54:498,54,0 chrIX 49550 . T C 602 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=8.25;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:72:635,72,0 chrIX 49641 . T G 1578 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.97;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1611,189,0 chrIX 50259 . G A 2696 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.92;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2729,297,0 chrIX 50712 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2041,231,0 chrIX 50898 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.44;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1184,135,0 chrIX 51326 . T C 135.06 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=166.2394;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=1.41;SB=-7.131e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:21:168,21,0 chrIX 51375 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0364;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.08;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2282,252,0 chrIX 51395 . T A 2171 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.51;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2204,249,0 chrIX 51702 . C T 1758 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1791,198,0 chrIX 51756 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2633,291,0 chrIX 52377 . G C 1575 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.53;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1608,183,0 chrIX 52713 . G A 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1153;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.601;QD=20.50;ReadPosRankSum=0.588;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2206,243,0 chrIX 53103 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=94;Dels=0.01;FS=2.794;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.252;QD=18.56;ReadPosRankSum=2.397;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1778,201,0 chrIX 53238 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.85;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1086,126,0 chrIX 54480 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.43;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1445,162,0 chrIX 55428 . G T 1564 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=15.64;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1597,171,0 chrIX 55431 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=14.48;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1495,174,0 chrIX 55461 . A T 1515 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=15.00;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1548,171,0 chrIX 55678 . A C 2183 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=14.85;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2216,252,0 chrIX 55716 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=14.57;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1956,228,0 chrIX 55837 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.55;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1753,198,0 chrIX 56196 . T C 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.572;QD=18.63;ReadPosRankSum=1.679;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1281,144,0 chrIX 56841 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.67;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1863,210,0 chrIX 57063 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2064,225,0 chrIX 57758 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=16.32;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2464,279,0 chrIX 57773 . A G 2370 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=15.49;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2403,273,0 chrIX 57794 . G A 2635 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.82;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2668,309,0 chrIX 58256 . C G 1516 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.21;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1549,177,0 chrIX 58508 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=15.94;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:894,102,0 chrIX 58511 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.04;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:919,99,0 chrIX 58574 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.33;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1212,138,0 chrIX 59078 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.64;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1722,189,0 chrIX 59120 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.24;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2078,228,0 chrIX 59552 . T G 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.072;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.293;QD=19.29;ReadPosRankSum=1.683;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1422,162,0 chrIX 59555 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.45;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1453,159,0 chrIX 59639 . T A 1759 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.69;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1792,192,0 chrIX 60280 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.1621;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.538;QD=20.78;ReadPosRankSum=1.653;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1862,210,0 chrIX 60844 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=16.82;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1917,225,0 chrIX 60879 . A C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.272;QD=17.09;ReadPosRankSum=2.369;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1622,183,0 chrIX 61323 . C T 664 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.47;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:697,75,0 chrIX 61466 . C A 1316 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1349,147,0 chrIX 62057 . A C 1592 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.81;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1625,186,0 chrIX 62116 . C A 1064 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1097,123,0 chrIX 63202 . T C 1075 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.53;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1108,126,0 chrIX 63642 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.33;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:964,102,0 chrIX 63655 . A G 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=4.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.312;QD=16.17;ReadPosRankSum=1.675;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,60:63:99:1052,117,0 chrIX 64057 . C A 1089 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.15;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1122,126,0 chrIX 64159 . T C 996 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.33;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1029,117,0 chrIX 64231 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1292,141,0 chrIX 64310 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.97;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1663,183,0 chrIX 64439 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.30;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1418,153,0 chrIX 64467 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.15;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1429,159,0 chrIX 64564 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.94;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1503,171,0 chrIX 64705 . A G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=7.360;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.354;QD=20.87;ReadPosRankSum=2.359;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1744,198,0 chrIX 64944 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.40;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2743,297,0 chrIX 65281 . T A 1999 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.61;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2032,219,0 chrIX 65341 . T C 1023 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=15.74;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1056,120,0 chrIX 65368 . T C 1023 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.77;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1056,120,0 chrIX 65518 . C A 1692 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.26;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1725,189,0 chrIX 65551 . C G 1634 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1667,189,0 chrIX 65614 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.59;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:929,108,0 chrIX 65755 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.66;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1293,141,0 chrIX 65758 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.92;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1267,138,0 chrIX 66001 . T C 1022 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.44;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1055,120,0 chrIX 66115 . T A 646 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=13.74;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:679,78,0 chrIX 66117 . T C 638 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=13.87;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:78:671,78,0 chrIX 66286 . T G 1221 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1254,138,0 chrIX 66328 . T A 1301 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.33;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1334,153,0 chrIX 66373 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.84;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1501,171,0 chrIX 66487 . A T 1093 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.02;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1126,126,0 chrIX 66488 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=54;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.333;QD=19.56;ReadPosRankSum=1.666;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,51:54:99:1089,123,0 chrIX 66511 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.56;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1035,117,0 chrIX 66647 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.46;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1240,135,0 chrIX 67321 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.58;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1208,138,0 chrIX 67392 . T C 586 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=15.42;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:619,72,0 chrIX 67395 . A T 721 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.59;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:754,81,0 chrIX 67426 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=15.37;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:694,75,0 chrIX 67439 . G A 741 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.82;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:774,87,0 chrIX 67951 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.10;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1542,168,0 chrIX 68186 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.03;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1707,183,0 chrIX 68312 . G T 2414 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.67;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2447,270,0 chrIX 68384 . A T 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.505;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.688;QD=19.63;ReadPosRankSum=1.688;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1584,171,0 chrIX 68461 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1278,144,0 chrIX 68597 . A T 2091 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2124,228,0 chrIX 68857 . A G 814 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:847,96,0 chrIX 69624 . C A 2156 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.82;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2189,240,0 chrIX 69651 . A G 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.393;DP=86;Dels=0.00;FS=22.319;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-2.892;QD=12.64;ReadPosRankSum=4.631;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:8,78:86:99:1120,126,0 chrIX 69658 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=13.36;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1035,117,0 chrIX 69770 . T G 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.170;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.124;QD=18.88;ReadPosRankSum=1.639;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1430,142,0 chrIX 69789 . G A 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.990;QD=18.99;ReadPosRankSum=-0.247;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1381,159,0 chrIX 69950 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.02;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1332,150,0 chrIX 70241 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.07;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1865,213,0 chrIX 70523 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.11;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1982,225,0 chrIX 70598 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1700,192,0 chrIX 71330 . T A 1632 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.43;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1665,189,0 chrIX 71768 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1431,156,0 chrIX 72464 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1951,219,0 chrIX 73558 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.28;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1756,192,0 chrIX 73880 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1830,201,0 chrIX 74340 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.85;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1534,174,0 chrIX 74541 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.33;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:813,90,0 chrIX 75152 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.01;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1454,156,0 chrIX 75231 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.9977;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.13;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1724,195,0 chrIX 75717 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=16.78;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1459,168,0 chrIX 75847 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=13.05;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1038,117,0 chrIX 76028 . G T 110.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=68;Dels=0.01;FS=65.946;HaplotypeScore=9.9891;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-0.238;QD=1.62;ReadPosRankSum=-3.648;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:25,42:67:99:140,0,113 chrIX 76172 . A G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=6.799;HaplotypeScore=9.0801;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.595;QD=21.71;ReadPosRankSum=1.525;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1531,177,0 chrIX 76900 . C T 2191 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.74;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2224,246,0 chrIX 77020 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.28;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2345,261,0 chrIX 77307 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.35;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2168,246,0 chrIX 77331 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.62;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2657,294,0 chrIX 77427 . A T 1662 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1695,189,0 chrIX 77546 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1858,210,0 chrIX 77594 . T G 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.254;QD=23.97;ReadPosRankSum=1.692;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2142,243,0 chrIX 77952 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1750,189,0 chrIX 79354 . T C 1066 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.21;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1099,126,0 chrIX 79502 . A G 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.405;QD=20.15;ReadPosRankSum=1.659;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:980,114,0 chrIX 79550 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.10;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:877,99,0 chrIX 79625 . A G 860 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.70;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:893,102,0 chrIX 79786 . G A 682 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:715,81,0 chrIX 79822 . G A 803 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:836,90,0 chrIX 79996 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:992,111,0 chrIX 80509 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.73;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:965,108,0 chrIX 81272 . T A 1401 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.19;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1434,156,0 chrIX 81413 . T C 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=19.43;ReadPosRankSum=1.650;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1665,189,0 chrIX 82232 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.40;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1255,135,0 chrIX 82237 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.33;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1314,141,0 chrIX 82538 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.95;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2140,237,0 chrIX 82694 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.98;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1951,225,0 chrIX 82899 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=14.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1484,168,0 chrIX 82900 . A C 1594 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=15.48;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1627,183,0 chrIX 83067 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.80;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1913,216,0 chrIX 83104 . A C 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.599;QD=19.32;ReadPosRankSum=1.632;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2042,231,0 chrIX 83517 . C G 2054 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.38;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2087,240,0 chrIX 83571 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=4.370;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.391;QD=18.16;ReadPosRankSum=1.620;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1722,198,0 chrIX 83754 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=15.81;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1219,138,0 chrIX 84138 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.58;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1907,219,0 chrIX 85680 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.75;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:1932,210,0 chrIX 85758 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.78;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2568,282,0 chrIX 85860 . T C 2474 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.33;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2507,282,0 chrIX 86227 . T C 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.49;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2000,225,0 chrIX 86463 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.9769;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.90;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1590,177,0 chrIX 86586 . T G 1628 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.51;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1661,189,0 chrIX 86602 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.76;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1987,225,0 chrIX 86751 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.25;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1813,198,0 chrIX 86874 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.72;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1643,186,0 chrIX 86925 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8606;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.205;QD=21.12;ReadPosRankSum=2.102;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1680,192,0 chrIX 87135 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=17.49;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1677,186,0 chrIX 87150 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.36;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1428,159,0 chrIX 87159 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=16.04;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1204,138,0 chrIX 87283 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.40;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1999,216,0 chrIX 87342 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=3.802;HaplotypeScore=6.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.031;QD=21.66;ReadPosRankSum=1.650;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1874,196,0 chrIX 87780 . T C 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=56;Dels=0.00;FS=10.086;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.664;QD=16.12;ReadPosRankSum=1.664;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,50:56:99:936,108,0 chrIX 87864 . T C 1248 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.33;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1281,141,0 chrIX 88045 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.24;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1116,129,0 chrIX 88444 . G A 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.127;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.192;QD=18.03;ReadPosRankSum=0.137;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1169,109,0 chrIX 88448 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=16.42;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1117,123,0 chrIX 88786 . C T 982 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.19;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1015,108,0 chrIX 88861 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.48;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1629,183,0 chrIX 89302 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.97;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1551,177,0 chrIX 89380 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.35;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1641,183,0 chrIX 89718 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=3.218;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-1.376;QD=18.90;ReadPosRankSum=1.700;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2093,237,0 chrIX 90209 . G T 1269 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.47;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1302,141,0 chrIX 90313 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4019;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=15.49;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1117,120,0 chrIX 90599 . G A 1064 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.17;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1097,120,0 chrIX 90896 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1638,183,0 chrIX 91079 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.60;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1718,189,0 chrIX 91130 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1608,180,0 chrIX 91277 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.09;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1734,189,0 chrIX 91579 . C A 2008 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.56;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2041,219,0 chrIX 91633 . G A 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=4.277;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.939;QD=22.25;ReadPosRankSum=-0.605;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1924,210,0 chrIX 91661 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.87;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1783,198,0 chrIX 91709 . A T 1468 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.35;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1501,168,0 chrIX 91712 . T C 1327 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=16.80;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1360,156,0 chrIX 91718 . A G 1323 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.54;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1356,153,0 chrIX 91834 . T A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.065;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.732;QD=20.86;ReadPosRankSum=1.325;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2161,237,0 chrIX 91970 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.504;QD=20.71;ReadPosRankSum=-0.780;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1938,216,0 chrIX 92065 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.0686;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.701;QD=22.08;ReadPosRankSum=1.608;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1910,219,0 chrIX 92229 . G A 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-1.377;QD=19.38;ReadPosRankSum=0.444;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,77:82:99:1622,177,0 chrIX 92242 . C A 1573 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.66;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1606,177,0 chrIX 92420 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.309;QD=19.42;ReadPosRankSum=1.694;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1781,204,0 chrIX 92545 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.51;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1654,177,0 chrIX 92793 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.04;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1422,156,0 chrIX 92905 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.78;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1171,138,0 chrIX 92944 . A G 710 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=49;Dels=0.00;FS=7.749;HaplotypeScore=4.3690;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;MQRankSum=-2.648;QD=14.49;ReadPosRankSum=2.815;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:3,46:49:84:743,84,0 chrIX 92947 . G A 742 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=15.46;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:87:775,87,0 chrIX 92948 . A T 654 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=48;Dels=0.00;FS=7.585;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;MQRankSum=-2.811;QD=13.62;ReadPosRankSum=2.854;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:78:687,78,0 chrIX 92966 . C T 295 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=6.56;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:39:328,39,0 chrIX 92987 . T C 360 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=8.78;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:393,48,0 chrIX 92997 . G A 364 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.67;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:45:397,45,0 chrIX 92998 . A C 389 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.26;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:422,48,0 chrIX 92999 . A C 386 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.19;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:419,48,0 chrIX 93013 . G T 369 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=7.24;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:45:402,45,0 chrIX 93053 . C A 674 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=11.05;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:78:707,78,0 chrIX 93325 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.19;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1386,156,0 chrIX 93546 . G A 2575 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8121;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.53;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2608,294,0 chrIX 93577 . T C 2354 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1748;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.98;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2387,276,0 chrIX 93723 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.8854;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.81;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2388,267,0 chrIX 93804 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.08;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2141,243,0 chrIX 93903 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.05;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2525,279,0 chrIX 94062 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.51;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2740,309,0 chrIX 94089 . G C 2884 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.45;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2917,336,0 chrIX 94263 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.19;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2541,282,0 chrIX 94437 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.04;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2810,309,0 chrIX 94456 . C A 2919 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.78;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2952,327,0 chrIX 94563 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-1.189;QD=21.37;ReadPosRankSum=1.698;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2234,255,0 chrIX 94593 . A G 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.609;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.943;QD=19.97;ReadPosRankSum=1.698;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2070,237,0 chrIX 94653 . C A 1810 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.92;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1843,201,0 chrIX 94731 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.05;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1513,171,0 chrIX 94804 . G T 1646 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.60;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1679,183,0 chrIX 94805 . A T 1637 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.49;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1670,180,0 chrIX 94886 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=16.76;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1223,138,0 chrIX 94902 . T G 1185 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=13.94;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1218,138,0 chrIX 94907 . A G 1198 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=14.43;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1231,141,0 chrIX 94908 . T A 1203 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=14.49;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1236,138,0 chrIX 94919 . A C 1317 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9639;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=15.31;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1350,156,0 chrIX 95013 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.76;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1404,150,0 chrIX 95057 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.41;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1018,117,0 chrIX 95341 . C G 1691 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.79;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:90:99:1724,201,0 chrIX 95527 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.54;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1819,210,0 chrIX 95557 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.055;DP=124;Dels=0.00;FS=10.952;HaplotypeScore=6.5034;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.598;QD=15.56;ReadPosRankSum=4.114;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:6,116:124:99:1962,225,0 chrIX 95590 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2572;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.82;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2292,249,0 chrIX 95674 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.6909;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.88;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2072,237,0 chrIX 96598 . A C 2357 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.32;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2390,270,0 chrIX 96812 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.49;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1697,192,0 chrIX 96822 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.39;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1642,183,0 chrIX 96860 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.60;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1660,183,0 chrIX 96868 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.32;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1315,150,0 chrIX 96985 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=13.56;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1023,114,0 chrIX 97075 . T A 782 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=15.04;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:93:815,93,0 chrIX 97580 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5654;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.22;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2325,258,0 chrIX 98050 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.00;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1493,165,0 chrIX 98109 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.55;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1266,141,0 chrIX 98144 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.80;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1255,141,0 chrIX 98294 . C A 885 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.09;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:918,102,0 chrIX 98932 . A G 659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.115;QD=14.64;ReadPosRankSum=1.655;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:78:692,78,0 chrIX 99647 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.21;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1658,186,0 chrIX 99653 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.62;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1521,168,0 chrIX 99715 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=13.00;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:631,72,0 chrIX 99731 . C T 591 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=13.43;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,38:44:69:624,69,0 chrIX 99734 . A G 599 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=13.02;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:632,72,0 chrIX 99772 . C T 556 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=8.69;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:63:589,63,0 chrIX 99794 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=9.73;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:870,99,0 chrIX 99807 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=11.17;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1083,123,0 chrIX 99810 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8130;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=8.86;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:919,105,0 chrIX 99846 . T A 1397 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=13.06;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1430,156,0 chrIX 99972 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.59;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1178,135,0 chrIX 100166 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.25;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1400,156,0 chrIX 100355 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.767;QD=20.93;ReadPosRankSum=1.675;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1310,147,0 chrIX 100415 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.31;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1353,156,0 chrIX 100450 . T C 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=4.314;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.257;QD=17.98;ReadPosRankSum=1.604;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1004,114,0 chrIX 100595 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.20;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:775,87,0 chrIX 101006 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=15.26;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:796,93,0 chrIX 101012 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=15.23;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:93:840,93,0 chrIX 101027 . G A 838 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=14.96;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:871,96,0 chrIX 101030 . G A 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.087;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=0.152;QD=13.89;ReadPosRankSum=0.213;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:93:825,93,0 chrIX 101207 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.96;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1500,168,0 chrIX 101270 . A T 2086 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.5819;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.51;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2119,231,0 chrIX 101315 . C A 1925 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.89;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1958,216,0 chrIX 101321 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.82;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1789,204,0 chrIX 101559 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8382;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.806;QD=17.11;ReadPosRankSum=1.698;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1778,204,0 chrIX 101954 . G A 2309 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.99;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2342,258,0 chrIX 102495 . A C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.168;QD=20.97;ReadPosRankSum=1.676;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1333,150,0 chrIX 102597 . C T 660 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.00;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:693,75,0 chrIX 103132 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.10;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1790,201,0 chrIX 103157 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.09;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1821,207,0 chrIX 103303 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.03;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1259,141,0 chrIX 103318 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=15.93;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1228,141,0 chrIX 103339 . T G 1111 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.34;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1144,132,0 chrIX 103423 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.66;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1710,189,0 chrIX 103579 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.08;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1859,210,0 chrIX 103838 . A T 1612 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1645,177,0 chrIX 103927 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.19;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1911,213,0 chrIX 104128 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1347,144,0 chrIX 104826 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.31;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1223,138,0 chrIX 104830 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.11;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1256,141,0 chrIX 104911 . G C 1823 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.23;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1856,213,0 chrIX 105090 . T C 827 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.80;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:860,96,0 chrIX 105326 . A G 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=62.8976;MLEAC=2;MLEAF=1.00;MQ=67.51;MQ0=0;MQRankSum=1.163;QD=19.16;ReadPosRankSum=1.400;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1432,162,0 chrIX 105379 . C T 416 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=63.65;MQ0=0;QD=13.42;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:51:449,51,0 chrIX 105476 . T C 208.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.00;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:241,27,0 chrIX 105709 . C T 157.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.63;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:190,21,0 chrIX 105923 . A T 339 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:42:372,42,0 chrIX 105959 . A G 245 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=12.25;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:278,33,0 chrIX 105961 . G A 224 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=11.20;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,19:20:30:257,30,0 chrIX 106806 . A G 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.460;QD=14.41;ReadPosRankSum=1.707;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,139:141:99:2065,237,0 chrIX 106841 . G A 2747 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.50;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2780,303,0 chrIX 107451 . A G 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=130;Dels=0.00;FS=5.322;HaplotypeScore=11.4491;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.302;QD=21.35;ReadPosRankSum=1.705;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,125:130:99:2809,318,0 chrIX 107538 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.14;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2269,258,0 chrIX 107705 . T C 3015 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.65;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:3048,342,0 chrIX 108375 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.1968;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.90;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1659,183,0 chrIX 109578 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=104;Dels=0.00;FS=3.274;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.087;QD=20.80;ReadPosRankSum=1.698;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2196,252,0 chrIX 109845 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.331;QD=19.37;ReadPosRankSum=1.654;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1757,201,0 chrIX 110073 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.33;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1073,120,0 chrIX 110376 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.091;QD=18.50;ReadPosRankSum=1.611;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1106,123,0 chrIX 110466 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.14;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1428,162,0 chrIX 110559 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1489,171,0 chrIX 111173 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.67;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1121,123,0 chrIX 111519 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.23;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1611,186,0 chrIX 111569 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.67;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1160,126,0 chrIX 111631 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=23.00;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1160,129,0 chrIX 111894 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.32;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1004,114,0 chrIX 112032 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.71;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1379,156,0 chrIX 112038 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.12;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:65:99:1341,150,0 chrIX 112043 . T A 1199 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.66;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1232,138,0 chrIX 112143 . A G 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=6.812;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.299;QD=21.84;ReadPosRankSum=1.684;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1649,192,0 chrIX 112368 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.07;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1463,165,0 chrIX 112374 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.74;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1495,171,0 chrIX 112854 . T A 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.289;QD=17.47;ReadPosRankSum=1.692;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1535,177,0 chrIX 113159 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.78;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2256,249,0 chrIX 113517 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.14;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1564,168,0 chrIX 113518 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.36;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1504,168,0 chrIX 113561 . A T 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.675;QD=19.16;ReadPosRankSum=1.696;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1872,204,0 chrIX 113679 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.5953;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.62;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1821,198,0 chrIX 113799 . C A 1737 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.27;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1770,195,0 chrIX 113838 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9414;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.92;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1471,168,0 chrIX 114027 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.74;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1474,171,0 chrIX 114549 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.16;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1041,117,0 chrIX 114791 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=17.90;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1161,132,0 chrIX 114808 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.09;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1229,138,0 chrIX 114886 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.09;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1640,177,0 chrIX 115136 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.78;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1492,168,0 chrIX 115821 . T C 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.364;QD=18.96;ReadPosRankSum=1.585;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:924,105,0 chrIX 115941 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.56;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1020,111,0 chrIX 116245 . G T 1082 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.81;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1115,123,0 chrIX 116385 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.53;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:962,108,0 chrIX 116694 . C A 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.331;QD=24.61;ReadPosRankSum=-0.019;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2248,240,0 chrIX 116742 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.640;QD=22.93;ReadPosRankSum=1.363;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1753,178,0 chrIX 117012 . T A 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=112;Dels=0.00;FS=6.464;HaplotypeScore=14.9076;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.011;QD=21.10;ReadPosRankSum=2.405;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2396,264,0 chrIX 117336 . A T 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.283;QD=19.19;ReadPosRankSum=1.661;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1914,210,0 chrIX 117411 . T C 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=8.2857;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.611;QD=14.89;ReadPosRankSum=-0.761;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:4,67:72:99:1120,129,0 chrIX 117413 . T G 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.548;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.4635;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.734;QD=12.86;ReadPosRankSum=-0.631;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:6,65:71:48:946,48,0 chrIX 117717 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.11;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,159,0 chrIX 117809 . T G 1897 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.32;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1930,216,0 chrIX 118294 . A G 2569 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.03;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2602,291,0 chrIX 118307 . A G 2548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=2.995;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.596;QD=19.01;ReadPosRankSum=2.395;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2581,291,0 chrIX 118750 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.56;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1847,207,0 chrIX 118855 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.9672;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.650;QD=20.42;ReadPosRankSum=2.350;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1544,158,0 chrIX 119687 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.84;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1303,144,0 chrIX 120214 . T A 1352 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.48;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1385,156,0 chrIX 120377 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1365,147,0 chrIX 121460 . A G 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=2.915;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.102;QD=18.40;ReadPosRankSum=2.136;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1045,120,0 chrIX 121534 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.63;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1407,162,0 chrIX 121645 . T C 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.882;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.997;QD=19.05;ReadPosRankSum=1.680;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1290,147,0 chrIX 121652 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.70;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1113,126,0 chrIX 121741 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.19;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:923,102,0 chrIX 122282 . G T 1397 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.25;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1430,159,0 chrIX 122284 . C G 1401 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.60;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1434,159,0 chrIX 122583 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.81;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1350,150,0 chrIX 122616 . A C 1147 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=15.71;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1180,132,0 chrIX 122620 . A T 1038 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=13.66;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1071,123,0 chrIX 122940 . A T 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=82;Dels=0.00;FS=4.997;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.899;QD=22.04;ReadPosRankSum=1.644;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1840,207,0 chrIX 123753 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.54;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1208,135,0 chrIX 124830 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.577;QD=19.23;ReadPosRankSum=1.377;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1533,174,0 chrIX 125289 . T G 1482 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.00;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1515,174,0 chrIX 125455 . C G 1658 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.22;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1691,192,0 chrIX 126032 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.0756;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.51;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1754,195,0 chrIX 126041 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.68;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1695,183,0 chrIX 126375 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-2.221;QD=19.83;ReadPosRankSum=2.393;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1738,201,0 chrIX 126566 . T C 2598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=129;Dels=0.00;FS=8.787;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.618;QD=20.14;ReadPosRankSum=3.295;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:4,125:129:99:2631,300,0 chrIX 127636 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=-0.022;QD=17.14;ReadPosRankSum=1.644;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1404,159,0 chrIX 127637 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=17.79;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1421,162,0 chrIX 127749 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.97;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2445,273,0 chrIX 127774 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1748;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.81;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2008,222,0 chrIX 129806 . T C 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=87;Dels=0.00;FS=18.685;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.799;QD=17.00;ReadPosRankSum=3.289;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:4,81:87:99:1512,171,0 chrIX 129937 . T A 1471 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7398;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.61;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1504,174,0 chrIX 130000 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.81;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1140,129,0 chrIX 130004 . T A 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-1.427;QD=16.21;ReadPosRankSum=1.681;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1135,123,0 chrIX 130049 . G T 972 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=16.47;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1005,111,0 chrIX 130270 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.30;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1304,144,0 chrIX 130431 . G T 1595 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2711;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.46;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1628,180,0 chrIX 130508 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.05;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1312,150,0 chrIX 130537 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.11;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1065,117,0 chrIX 130544 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.14;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1105,120,0 chrIX 130756 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.35;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1678,192,0 chrIX 130771 . A T 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-1.352;QD=19.32;ReadPosRankSum=1.690;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1617,177,0 chrIX 131490 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=16.68;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1968,225,0 chrIX 131557 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.75;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1327,150,0 chrIX 131617 . G A 926 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.69;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:959,108,0 chrIX 131883 . C A 1286 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.37;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1319,153,0 chrIX 131983 . A G 580 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.12;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:613,69,0 chrIX 132018 . G A 581 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=12.36;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:614,69,0 chrIX 132156 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.95;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2505,285,0 chrIX 132269 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.40;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1358,153,0 chrIX 132429 . T G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.8457;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.658;QD=19.63;ReadPosRankSum=1.585;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1878,216,0 chrIX 132543 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.723;QD=20.22;ReadPosRankSum=1.698;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2116,243,0 chrIX 132615 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.67;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2039,234,0 chrIX 133353 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.71;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1524,168,0 chrIX 133368 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7893;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.25;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1471,168,0 chrIX 133668 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.45;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1177,132,0 chrIX 133698 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.85;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:938,105,0 chrIX 133869 . T C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.979;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.559;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1044,120,0 chrIX 133870 . T C 971 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=15.92;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1004,114,0 chrIX 134277 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.62;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1332,150,0 chrIX 134472 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.44;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1379,153,0 chrIX 134641 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.13;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1768,201,0 chrIX 134773 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.43;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1749,195,0 chrIX 134779 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.000;QD=19.99;ReadPosRankSum=1.229;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1732,198,0 chrIX 134788 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.18;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1740,195,0 chrIX 134885 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.34;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1732,198,0 chrIX 134890 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=17.40;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1669,186,0 chrIX 134917 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=5.278;HaplotypeScore=7.0498;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.030;QD=16.16;ReadPosRankSum=2.410;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1665,186,0 chrIX 134920 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=15.63;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1518,168,0 chrIX 135075 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.45;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1272,147,0 chrIX 135273 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1602,183,0 chrIX 135274 . T A 1498 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.42;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1531,174,0 chrIX 135361 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.56;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:794,90,0 chrIX 135542 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.86;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2158,237,0 chrIX 135577 . A G 2458 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.14;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2491,282,0 chrIX 135647 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.80;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2126,243,0 chrIX 135911 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.96;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1417,156,0 chrIX 135991 . G C 1444 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.51;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1477,168,0 chrIX 136028 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.98;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1267,138,0 chrIX 136044 . T A 1078 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.67;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1111,123,0 chrIX 136075 . A G 588 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=15.89;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:621,72,0 chrIX 136100 . T C 768 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.45;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:801,90,0 chrIX 136134 . G A 843 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=19.60;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:876,99,0 chrIX 136172 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=15.85;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:778,87,0 chrIX 136179 . A G 768 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=17.07;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:801,90,0 chrIX 136210 . A T 335 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=11.17;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:42:368,42,0 chrIX 136356 . T A 848 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.68;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:881,96,0 chrIX 136527 . A G 582 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.77;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:615,69,0 chrIX 136579 . G C 483 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.95;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:516,57,0 chrIX 136594 . G A 492 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.68;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:525,57,0 chrIX 136762 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.34;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1756,189,0 chrIX 137160 . A T 261 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=12.43;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:294,33,0 chrIX 137311 . C T 604 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.23;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:637,72,0 chrIX 138253 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.41;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1625,177,0 chrIX 138293 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.35;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:96:866,96,0 chrIX 138305 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=16.46;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:823,93,0 chrIX 138346 . T C 886 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.46;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:919,105,0 chrIX 138425 . A G 783 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=107.2824;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.40;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:816,93,0 chrIX 138455 . A C 852 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=17.75;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:885,99,0 chrIX 138486 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=16.84;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:87:774,87,0 chrIX 138495 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=16.69;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:851,93,0 chrIX 138639 . T C 1089 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=20.55;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1122,126,0 chrIX 138652 . C A 1058 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=19.59;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1091,123,0 chrIX 138710 . T C 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=-0.102;QD=18.91;ReadPosRankSum=1.630;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1319,150,0 chrIX 138723 . T C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.019;QD=19.09;ReadPosRankSum=1.681;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1331,150,0 chrIX 138759 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.5955;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.76;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1631,180,0 chrIX 138838 . G C 1519 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=19.47;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1552,177,0 chrIX 138848 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=15.38;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1325,147,0 chrIX 138871 . A G 945 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=12.95;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:978,114,0 chrIX 138886 . G A 779 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=13.20;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:812,93,0 chrIX 138921 . G C 678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-0.146;QD=12.11;ReadPosRankSum=2.875;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:84:711,84,0 chrIX 138922 . T G 724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;MQRankSum=-0.922;QD=13.16;ReadPosRankSum=2.360;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:87:757,87,0 chrIX 138951 . G C 583 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=13.88;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:616,72,0 chrIX 138983 . C T 479 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;QD=11.40;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:512,54,0 chrIX 139006 . T C 503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=9.548;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;MQRankSum=-0.030;QD=12.27;ReadPosRankSum=2.330;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:60:536,60,0 chrIX 139017 . G C 641 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=15.63;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:674,78,0 chrIX 139370 . A G 285 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=10.18;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:318,36,0 chrIX 139427 . T A 427 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=12.56;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:51:460,51,0 chrIX 139432 . G A 447 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=12.42;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:480,54,0 chrIX 139542 . T A 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.203;QD=21.78;ReadPosRankSum=1.701;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2451,276,0 chrIX 139685 . T C 1547 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.91;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1580,177,0 chrIX 139686 . T A 1587 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.45;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1620,177,0 chrIX 139695 . T C 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.11;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1371,159,0 chrIX 139714 . T G 1066 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=18.70;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1099,123,0 chrIX 140602 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.59;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1385,156,0 chrIX 140742 . T C 683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=20.09;ReadPosRankSum=1.529;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:81:716,81,0 chrIX 140787 . T C 825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.473;QD=20.62;ReadPosRankSum=1.646;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:96:858,96,0 chrIX 140853 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1115,120,0 chrIX 140910 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.32;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1374,147,0 chrIX 140960 . A T 1578 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.54;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1611,177,0 chrIX 141013 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.11;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1441,162,0 chrIX 141022 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.487;QD=19.64;ReadPosRankSum=1.678;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1290,147,0 chrIX 141090 . C A 1081 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.65;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1114,129,0 chrIX 141212 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.86;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1301,150,0 chrIX 141321 . T G 1294 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.97;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1327,153,0 chrIX 141332 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.45;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1272,144,0 chrIX 141419 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=3.068;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.239;QD=22.10;ReadPosRankSum=2.376;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1514,171,0 chrIX 141469 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.98;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1568,171,0 chrIX 141644 . T C 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=75;Dels=0.00;FS=9.077;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.051;QD=18.35;ReadPosRankSum=2.382;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:2,71:75:99:1409,159,0 chrIX 141727 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=2.653;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.912;QD=21.18;ReadPosRankSum=2.393;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1876,216,0 chrIX 141911 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1386,159,0 chrIX 141990 . A G 771 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=15.12;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:804,90,0 chrIX 142201 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.38;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1765,201,0 chrIX 142278 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1234,135,0 chrIX 142390 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.8051;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.00;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1131,126,0 chrIX 142456 . A T 1560 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.26;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1593,177,0 chrIX 142478 . C A 1474 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.06;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1507,168,0 chrIX 142488 . C G 1338 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.11;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1371,156,0 chrIX 142542 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1589,183,0 chrIX 142618 . G T 1434 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.12;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1467,165,0 chrIX 142688 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.28;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1544,180,0 chrIX 142765 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.882;HaplotypeScore=5.5127;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.417;QD=17.19;ReadPosRankSum=1.680;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1185,132,0 chrIX 142768 . T A 1075 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=5.0987;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.33;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1108,123,0 chrIX 142906 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.69;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2592,282,0 chrIX 143092 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.86;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1493,165,0 chrIX 143302 . C T 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.119;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.4297;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.843;QD=18.54;ReadPosRankSum=0.598;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2165,217,0 chrIX 143414 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1358,153,0 chrIX 143458 . C A 1247 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1280,141,0 chrIX 144130 . T C 92.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.485;DP=21;Dels=0.00;FS=13.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=2.788;QD=4.39;ReadPosRankSum=-1.919;SB=2.74 GT:AD:DP:GQ:PL 1/1:8,13:21:15:125,15,0 chrIX 144276 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.81;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1167,126,0 chrIX 144516 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.58;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1612,183,0 chrIX 144594 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.45;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2167,234,0 chrIX 144792 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.42;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1479,171,0 chrIX 145248 . T A 2262 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0250;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.96;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2295,255,0 chrIX 145695 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.99;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2258,255,0 chrIX 145805 . T G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.032;QD=17.44;ReadPosRankSum=1.615;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1603,183,0 chrIX 145806 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.62;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1799,195,0 chrIX 145870 . C T 1253 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=16.06;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1286,141,0 chrIX 146023 . G T 1792 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.08;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1825,198,0 chrIX 146193 . T C 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.254;HaplotypeScore=7.4659;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.039;QD=18.71;ReadPosRankSum=1.606;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1081,126,0 chrIX 146403 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.80;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1725,201,0 chrIX 146457 . T A 1523 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.70;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1556,177,0 chrIX 146460 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.08;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1656,189,0 chrIX 146901 . A G 848.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;DP=72;Dels=0.00;FS=1.245;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-3.026;QD=11.78;ReadPosRankSum=4.230;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:14,58:72:99:878,0,116 chrIX 146913 . T C 618.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=69;Dels=0.00;FS=1.095;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=0;MQRankSum=-2.787;QD=8.96;ReadPosRankSum=2.273;SB=-3.850e+02 GT:AD:DP:GQ:PL 0/1:19,50:69:99:648,0,226 chrIX 146919 . A G 513.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;DP=69;Dels=0.00;FS=2.211;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=45.17;MQ0=0;MQRankSum=-1.964;QD=7.43;ReadPosRankSum=1.101;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:22,47:69:99:543,0,300 chrIX 146928 . C T 411.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DP=66;Dels=0.00;FS=0.981;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=43.81;MQ0=0;MQRankSum=-3.966;QD=6.23;ReadPosRankSum=-1.031;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:25,41:66:99:441,0,365 chrIX 146932 . G A 887 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=13.65;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:920,102,0 chrIX 146933 . C T 344.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DP=70;Dels=0.00;FS=3.284;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=0;MQRankSum=4.553;QD=4.91;ReadPosRankSum=1.769;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:40,29:70:99:374,0,300 chrIX 146985 . T G 413.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=23.6419;MLEAC=1;MLEAF=0.500;MQ=53.29;MQ0=0;MQRankSum=-1.023;QD=3.86;ReadPosRankSum=0.242;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:61,46:107:99:443,0,951 chrIX 146997 . G A 321.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;DP=101;Dels=0.00;FS=2.928;HaplotypeScore=33.5411;MLEAC=1;MLEAF=0.500;MQ=53.89;MQ0=0;MQRankSum=1.377;QD=3.18;ReadPosRankSum=3.216;SB=-1.830e+02 GT:AD:DP:GQ:PL 0/1:72,29:101:99:351,0,1131 chrIX 147011 . C T 360.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DP=133;Dels=0.00;FS=14.111;HaplotypeScore=45.9140;MLEAC=1;MLEAF=0.500;MQ=53.24;MQ0=0;MQRankSum=3.231;QD=2.71;ReadPosRankSum=-1.721;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:92,41:133:99:390,0,1367 chrIX 147051 . G T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DP=133;Dels=0.00;FS=5.996;HaplotypeScore=15.8395;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-3.910;QD=0.37;ReadPosRankSum=1.905;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:93,39:133:79:79,0,1693 chrIX 147057 . A G 211.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;DP=134;Dels=0.00;FS=17.844;HaplotypeScore=14.6619;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-4.648;QD=1.57;ReadPosRankSum=0.977;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:87,46:134:99:241,0,1530 chrIX 147092 . A G 776.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;DP=140;Dels=0.00;FS=53.840;HaplotypeScore=10.5754;MLEAC=1;MLEAF=0.500;MQ=52.24;MQ0=0;MQRankSum=-0.500;QD=5.54;ReadPosRankSum=-0.400;SB=-4.330e+02 GT:AD:DP:GQ:PL 0/1:69,71:140:99:806,0,1268 chrIX 147119 . C T 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770;DP=108;Dels=0.00;FS=41.058;HaplotypeScore=7.3880;MLEAC=1;MLEAF=0.500;MQ=51.97;MQ0=0;MQRankSum=0.622;QD=1.99;ReadPosRankSum=-2.884;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:66,38:108:99:245,0,1019 chrIX 147145 . T G 1424 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.9428;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.95;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1457,165,0 chrIX 147273 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.26;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1073,123,0 chrIX 147738 . C T 925 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.14;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:958,108,0 chrIX 148037 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.80;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1221,132,0 chrIX 148204 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.02;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1234,138,0 chrIX 148217 . T A 1422 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.31;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1455,159,0 chrIX 148268 . A T 1197 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.70;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1230,132,0 chrIX 148479 . C A 854 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=21.90;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:887,96,0 chrIX 148503 . A G 620 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.24;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:653,72,0 chrIX 148587 . A G 989 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.66;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1022,117,0 chrIX 148665 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.13;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1583,177,0 chrIX 148751 . G C 967 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9152;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=16.67;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1000,111,0 chrIX 148776 . G A 685 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.70;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:78:718,78,0 chrIX 148798 . T A 622 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.17;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:655,72,0 chrIX 148815 . G A 624 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.83;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:657,69,0 chrIX 148834 . A C 433 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=16.04;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:466,54,0 chrIX 148892 . C T 292 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=11.68;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:36:325,36,0 chrIX 148925 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.52;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:359,39,0 chrIX 149011 . T C 478 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.12;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:60:511,60,0 chrIX 149536 . G T 2210 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7486;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.67;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2243,243,0 chrIX 149790 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.2457;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.12;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1601,174,0 chrIX 149978 . C G 1320 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.14;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1353,153,0 chrIX 150043 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.88;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1481,165,0 chrIX 150261 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.78;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1467,168,0 chrIX 150599 . C T 3293.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.38;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3293,369,0 chrIX 150780 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1897;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.59;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1950,222,0 chrIX 150789 . A G 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=4.486;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.644;QD=17.23;ReadPosRankSum=1.703;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2083,234,0 chrIX 150852 . G C 2579 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.39;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2612,300,0 chrIX 151371 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=19.11;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1103,123,0 chrIX 151377 . A G 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.064;QD=17.56;ReadPosRankSum=1.540;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:981,111,0 chrIX 151394 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.49;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:988,111,0 chrIX 151499 . G A 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.886;DP=70;Dels=0.00;FS=8.376;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.476;QD=16.60;ReadPosRankSum=1.533;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1195,135,0 chrIX 151503 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=59.9062;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=0.25;SB=-6.738e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:6:48,6,0 chrIX 151727 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.25;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1511,165,0 chrIX 151731 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=17.39;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1459,165,0 chrIX 151767 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=12.05;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1057,114,0 chrIX 151775 . T C 874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=10.53;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:907,102,0 chrIX 151788 . T G 664 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=10.06;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:697,78,0 chrIX 151869 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.95;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1189,129,0 chrIX 151882 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.14;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1216,141,0 chrIX 151917 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=14.17;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1025,114,0 chrIX 151918 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=14.11;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1021,111,0 chrIX 152184 . T A 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-1.253;QD=20.35;ReadPosRankSum=1.679;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1356,150,0 chrIX 152419 . A T 2353 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2386,267,0 chrIX 152632 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1823,204,0 chrIX 152800 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.60;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1537,171,0 chrIX 152978 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1462,165,0 chrIX 153400 . A T 1620 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.04;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1653,180,0 chrIX 153463 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.492;QD=19.33;ReadPosRankSum=1.689;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1599,180,0 chrIX 153593 . G A 5558.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=18.3404;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.50;SB=-2.845e+03 GT:AD:DP:GQ:PL 1/1:0,246:247:99:5558,618,0 chrIX 153725 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.53;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1330,150,0 chrIX 153913 . T A 2252 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.86;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2285,246,0 chrIX 154387 . C T 1316 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.69;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1349,150,0 chrIX 154834 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8512;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.382;QD=19.53;ReadPosRankSum=1.693;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1771,201,0 chrIX 154922 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.39;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2133,246,0 chrIX 155016 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.59;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1404,153,0 chrIX 155033 . A T 1319 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.07;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1352,153,0 chrIX 155270 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.19;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1670,192,0 chrIX 155292 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.94;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1708,195,0 chrIX 155480 . A C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.732;QD=21.72;ReadPosRankSum=1.617;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1988,225,0 chrIX 155570 . C A 1242 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=14.11;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1275,144,0 chrIX 155630 . T C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=7.616;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.811;QD=17.73;ReadPosRankSum=2.389;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1487,171,0 chrIX 155702 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.12;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1352,150,0 chrIX 155792 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1442,159,0 chrIX 156015 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.80;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1864,210,0 chrIX 156029 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.89;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1620,189,0 chrIX 156304 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.31;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2130,240,0 chrIX 156711 . G T 2079 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8268;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.38;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2112,234,0 chrIX 156724 . A C 1847 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.66;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1880,213,0 chrIX 156752 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=15.48;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1411,162,0 chrIX 156869 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.10;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1721,189,0 chrIX 156990 . G A 2598 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.99;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2631,288,0 chrIX 157219 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.97;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2222,255,0 chrIX 157363 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=69;Dels=0.00;FS=2.835;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.978;QD=22.64;ReadPosRankSum=2.377;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1595,180,0 chrIX 157619 . A G 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=105;Dels=0.00;FS=10.697;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.809;QD=22.23;ReadPosRankSum=2.403;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2367,267,0 chrIX 157961 . C G 3609.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.11;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3609,414,0 chrIX 157967 . G A 3738.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.38;SB=-2.093e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:3738,408,0 chrIX 158276 . T G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=5.948;HaplotypeScore=9.1164;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.116;QD=17.90;ReadPosRankSum=1.703;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2145,246,0 chrIX 158408 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.4769;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.33;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1921,225,0 chrIX 158675 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.49;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1846,204,0 chrIX 158843 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=12.5978;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.72;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1380,156,0 chrIX 158912 . T C 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=3.072;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.415;QD=19.04;ReadPosRankSum=1.683;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1442,162,0 chrIX 159305 . C G 1684 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.51;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1717,195,0 chrIX 160007 . G C 2092 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5954;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.57;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2125,243,0 chrIX 160170 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=17.52;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1680,189,0 chrIX 160393 . C G 746 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=11.13;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:779,90,0 chrIX 160442 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=14.29;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:933,102,0 chrIX 160449 . A G 794 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=11.68;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:827,96,0 chrIX 160453 . G A 847 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=12.83;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:880,96,0 chrIX 160457 . G A 800 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=11.27;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:93:833,93,0 chrIX 160764 . T C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=4.921;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.732;QD=18.35;ReadPosRankSum=1.674;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1134,129,0 chrIX 160880 . G C 920 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.3832;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=12.11;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:76:99:953,111,0 chrIX 161147 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.555;QD=22.06;ReadPosRankSum=1.688;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1776,204,0 chrIX 161561 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.28;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1386,159,0 chrIX 161738 . T C 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.846;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-2.102;QD=16.95;ReadPosRankSum=2.392;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1474,168,0 chrIX 161930 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.90;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2083,234,0 chrIX 162177 . T C 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=108;Dels=0.00;FS=9.533;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.594;QD=18.20;ReadPosRankSum=2.878;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:1999,228,0 chrIX 162314 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.16;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1444,156,0 chrIX 162407 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.33;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1680,180,0 chrIX 163128 . T A 48.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.32;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:81,9,0 chrIX 163161 . C T 130.13 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:18:163,18,0 chrIX 163812 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.07;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2130,231,0 chrIX 164017 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.2453;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.96;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2508,279,0 chrIX 164279 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.96;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1670,186,0 chrIX 164332 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1684,186,0 chrIX 164475 . A G 864 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:897,102,0 chrIX 164883 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.90;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1150,129,0 chrIX 165018 . A G 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=37;Dels=0.00;FS=8.644;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.713;QD=21.24;ReadPosRankSum=2.317;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,35:37:93:819,93,0 chrIX 165039 . C G 833 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.93;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:866,96,0 chrIX 166116 . G C 879 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:912,105,0 chrIX 166141 . T A 840 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:873,93,0 chrIX 166175 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:911,102,0 chrIX 166463 . A C 1192 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.92;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1225,141,0 chrIX 166510 . T C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.018;QD=21.66;ReadPosRankSum=2.380;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1571,177,0 chrIX 166640 . T C 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=236.4388;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.652;QD=16.39;ReadPosRankSum=0.652;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1820,207,0 chrIX 166805 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.528;QD=18.73;ReadPosRankSum=1.651;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1625,186,0 chrIX 167635 . T C 1910 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.99;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1943,219,0 chrIX 167971 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.26;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1856,216,0 chrIX 168127 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.58;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1724,192,0 chrIX 168217 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5687;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.513;QD=15.46;ReadPosRankSum=1.469;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1254,141,0 chrIX 168244 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.21;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1098,126,0 chrIX 168373 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1018,117,0 chrIX 168511 . A G 948 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:981,111,0 chrIX 168871 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.39;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1059,120,0 chrIX 169256 . A G 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.256;HaplotypeScore=6.7170;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.400;QD=22.79;ReadPosRankSum=1.580;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2107,237,0 chrIX 169444 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.46;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:906,99,0 chrIX 169465 . C T 579 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=10.72;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:69:612,69,0 chrIX 169666 . C G 1440 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4615;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=13.71;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1473,168,0 chrIX 169671 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=107;Dels=0.00;FS=3.093;HaplotypeScore=4.3001;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.327;QD=13.98;ReadPosRankSum=1.699;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1529,174,0 chrIX 170139 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=2.825;HaplotypeScore=6.6942;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.704;QD=19.93;ReadPosRankSum=2.385;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1548,174,0 chrIX 170432 . A T 2263 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2296,258,0 chrIX 170567 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1454,156,0 chrIX 170921 . A T 1934 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.73;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1967,213,0 chrIX 171065 . C T 2682 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.95;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2715,303,0 chrIX 171154 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.20;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1959,219,0 chrIX 171278 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=16.88;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1687,195,0 chrIX 171281 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=16.70;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1736,198,0 chrIX 171535 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=19.66;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1881,210,0 chrIX 171556 . T A 1250 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=17.86;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1283,141,0 chrIX 171558 . T C 1160 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.57;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1193,135,0 chrIX 171569 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=14.83;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:967,105,0 chrIX 171616 . T A 725 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=12.72;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:758,84,0 chrIX 171632 . G A 776 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=14.11;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:87:809,87,0 chrIX 171711 . T A 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.610;QD=20.90;ReadPosRankSum=1.683;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1538,174,0 chrIX 171806 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.29;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2246,255,0 chrIX 171891 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.07;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1551,174,0 chrIX 171894 . A G 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-0.814;QD=17.25;ReadPosRankSum=1.649;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1465,168,0 chrIX 171999 . T C 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.5325;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.385;QD=23.21;ReadPosRankSum=1.684;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1727,198,0 chrIX 172044 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.69;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1478,159,0 chrIX 172074 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.61;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1517,168,0 chrIX 172231 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.91;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2170,240,0 chrIX 172693 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.93;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1767,201,0 chrIX 173181 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.00;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1313,144,0 chrIX 173732 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.02;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1927,210,0 chrIX 174154 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.6440;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.99;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2300,258,0 chrIX 174252 . A G 2177 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=21.14;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2210,249,0 chrIX 174273 . A G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=0.000;QD=19.92;ReadPosRankSum=1.699;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2125,243,0 chrIX 174304 . T G 2091 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.54;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2124,243,0 chrIX 174345 . T A 2052 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.39;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2085,237,0 chrIX 174391 . T A 2553 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.8013;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.49;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2586,276,0 chrIX 174414 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4381;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.91;SB=-1.658e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2775,318,0 chrIX 174453 . A T 2858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=143;Dels=0.00;FS=4.028;HaplotypeScore=8.2169;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.034;QD=19.99;ReadPosRankSum=1.706;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,141:143:99:2891,318,0 chrIX 174511 . G C 2027 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.11;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2060,234,0 chrIX 174546 . T G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.3941;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.436;QD=21.07;ReadPosRankSum=1.690;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1782,201,0 chrIX 174641 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=15.91;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1083,126,0 chrIX 174643 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=17.23;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1153,126,0 chrIX 174652 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=16.52;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1074,120,0 chrIX 174680 . C A 1097 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=16.62;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1130,123,0 chrIX 174681 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=15.93;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1132,123,0 chrIX 174751 . G A 2161 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.47;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2194,243,0 chrIX 174819 . A G 1735 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.16;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1768,198,0 chrIX 174904 . A C 1397 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.25;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1430,159,0 chrIX 175014 . T A 506 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.24;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:539,60,0 chrIX 175120 . C A 526 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=13.15;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:559,63,0 chrIX 175220 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.66;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:988,111,0 chrIX 175368 . A G 1220 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.46;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1253,141,0 chrIX 175484 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.65;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1890,216,0 chrIX 175568 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.25;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1169,129,0 chrIX 175751 . A T 1568 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0834;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.86;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1601,180,0 chrIX 175755 . T G 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=88;Dels=0.00;FS=2.709;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.694;QD=14.83;ReadPosRankSum=0.920;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1338,150,0 chrIX 175811 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=14.98;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1381,156,0 chrIX 175966 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.18;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1219,138,0 chrIX 176010 . G C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=52.9254;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=2;QD=0.38;SB=-6.728e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:6:54,6,0 chrIX 176012 . A T 1006 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=52.9254;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=2;QD=16.49;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1039,117,0 chrIX 176421 . G T 1833 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.56;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1866,201,0 chrIX 176578 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.57;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2335,261,0 chrIX 176678 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.82;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1850,213,0 chrIX 177550 . A G 2391 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2424,282,0 chrIX 177586 . G A 1569 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1602,183,0 chrIX 177966 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.51;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1403,162,0 chrIX 178160 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.97;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1899,213,0 chrIX 178183 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DP=75;Dels=0.00;FS=4.127;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.162;QD=18.95;ReadPosRankSum=1.316;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1454,168,0 chrIX 178524 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.99;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1476,165,0 chrIX 178558 . T C 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3996;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.271;QD=21.39;ReadPosRankSum=1.607;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1808,207,0 chrIX 179188 . G T 2052 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.96;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2085,234,0 chrIX 179273 . A G 1376 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=16.19;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1409,165,0 chrIX 179398 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.93;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2229,246,0 chrIX 179673 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=16.47;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1186,129,0 chrIX 180210 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.024;DP=75;Dels=0.00;FS=9.401;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.873;QD=15.31;ReadPosRankSum=3.311;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1181,135,0 chrIX 180257 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.77;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1442,165,0 chrIX 180425 . C A 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.89;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,195,0 chrIX 180756 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.88;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1052,117,0 chrIX 180762 . G A 1028 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.13;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1061,120,0 chrIX 180792 . A T 1065 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.90;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1098,120,0 chrIX 180798 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=13.69;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:923,105,0 chrIX 181158 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.86;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1610,180,0 chrIX 181236 . A G 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.320;QD=21.60;ReadPosRankSum=1.650;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:99:962,108,0 chrIX 181677 . A G 649 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.64;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:682,78,0 chrIX 182090 . A G 2168 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=10.2479;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=21.90;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2201,255,0 chrIX 182423 . G T 1714 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1747,192,0 chrIX 182837 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.80;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1281,150,0 chrIX 183064 . T G 720 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:753,87,0 chrIX 183280 . A G 440 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.75;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:473,54,0 chrIX 183332 . A G 853 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:886,102,0 chrIX 183425 . A G 389 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.91;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:422,48,0 chrIX 183552 . G T 1270 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.68;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1303,141,0 chrIX 184053 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1837,204,0 chrIX 184116 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.0761;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.98;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1989,219,0 chrIX 184665 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.07;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1063,117,0 chrIX 184925 . C A 1115 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1148,123,0 chrIX 184955 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.59;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:944,108,0 chrIX 185013 . T G 1012 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.09;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1045,117,0 chrIX 185152 . T A 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.023;QD=18.92;ReadPosRankSum=1.689;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1036,117,0 chrIX 185367 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.09;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1599,183,0 chrIX 185829 . A G 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=62;Dels=0.00;FS=6.225;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.312;QD=19.34;ReadPosRankSum=2.756;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:99:1232,138,0 chrIX 185961 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=70;Dels=0.00;FS=3.060;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.906;QD=17.43;ReadPosRankSum=2.377;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,66:70:99:1253,144,0 chrIX 186053 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.43;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1259,135,0 chrIX 186072 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.48;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1262,141,0 chrIX 186216 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:936,102,0 chrIX 186691 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2882,312,0 chrIX 186739 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.73;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,110:115:99:2417,264,0 chrIX 187360 . A G 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.773;DP=102;Dels=0.00;FS=6.105;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.297;QD=20.60;ReadPosRankSum=2.753;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2134,243,0 chrIX 187760 . T A 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4450;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.701;QD=19.41;ReadPosRankSum=0.495;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2226,255,0 chrIX 187968 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1735,198,0 chrIX 188231 . G C 1729 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0110;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.00;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1762,198,0 chrIX 188680 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.466;QD=18.78;ReadPosRankSum=1.688;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1517,177,0 chrIX 188822 . C G 2662 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=22.37;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2695,303,0 chrIX 188845 . G A 2807 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=23.20;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2840,309,0 chrIX 188870 . A T 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.082;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;MQRankSum=-0.028;QD=17.98;ReadPosRankSum=1.704;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2226,243,0 chrIX 188877 . T C 1952 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.43;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1985,228,0 chrIX 189178 . G A 2179 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.16;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2212,240,0 chrIX 189248 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.65;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1657,180,0 chrIX 189317 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=5.563;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.270;QD=18.92;ReadPosRankSum=1.655;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1736,201,0 chrIX 189367 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.57;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,83:89:99:1775,201,0 chrIX 189777 . A G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=75;Dels=0.00;FS=5.736;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.493;QD=20.60;ReadPosRankSum=2.905;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:3,71:75:99:1578,177,0 chrIX 190035 . A C 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.011;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.223;QD=19.21;ReadPosRankSum=1.681;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1339,150,0 chrIX 190065 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.40;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1400,162,0 chrIX 190142 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.81;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1651,189,0 chrIX 190174 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.86;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1920,225,0 chrIX 190296 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5597;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.94;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1271,141,0 chrIX 190373 . C T 1219 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=14.87;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1252,138,0 chrIX 190375 . G T 1216 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=15.39;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1249,138,0 chrIX 190383 . C A 1097 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3875;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=13.71;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1130,129,0 chrIX 190487 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0536;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.83;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1670,177,0 chrIX 190598 . A G 1220 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.06;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1253,144,0 chrIX 190721 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.02;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1294,141,0 chrIX 191287 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.71;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1338,147,0 chrIX 191450 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.89;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1545,174,0 chrIX 191573 . T C 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.487;QD=16.97;ReadPosRankSum=1.678;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1136,129,0 chrIX 191594 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.84;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1450,162,0 chrIX 192137 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.13;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1206,132,0 chrIX 192413 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.652;DP=90;Dels=0.00;FS=6.063;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.742;QD=17.09;ReadPosRankSum=2.832;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1571,177,0 chrIX 192670 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.813;DP=104;Dels=0.00;FS=7.596;HaplotypeScore=10.0026;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.146;QD=20.03;ReadPosRankSum=4.036;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:6,98:104:99:2116,240,0 chrIX 193191 . C G 1999 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.60;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2032,228,0 chrIX 193298 . T C 1422 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.47;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:77:99:1455,165,0 chrIX 193744 . A G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.311;QD=16.07;ReadPosRankSum=1.592;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1222,141,0 chrIX 193815 . A G 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.629;QD=16.74;ReadPosRankSum=-1.577;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1171,132,0 chrIX 193939 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1299,150,0 chrIX 194026 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.17;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1655,180,0 chrIX 194170 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.69;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1573,174,0 chrIX 194267 . C T 914 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:947,102,0 chrIX 194587 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.84;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:56:99:1088,123,0 chrIX 194686 . T C 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=23.48;ReadPosRankSum=1.604;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1301,147,0 chrIX 195082 . T C 1422 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1455,165,0 chrIX 195274 . C G 1493 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.14;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1526,174,0 chrIX 195521 . T A 882 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.05;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:915,99,0 chrIX 195532 . C T 770 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.39;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:803,87,0 chrIX 195661 . T C 684 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.54;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:81:717,81,0 chrIX 195787 . G T 1710 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.92;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1743,192,0 chrIX 195861 . A G 1421 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.56;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1454,165,0 chrIX 195912 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.50;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1161,126,0 chrIX 196248 . C G 1591 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.50;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1624,183,0 chrIX 197024 . G A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=49;Dels=0.00;FS=62.801;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=28.90;MQ0=2;MQRankSum=-1.090;QD=2.61;ReadPosRankSum=4.175;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:39,10:49:73:158,0,73 chrIX 197094 . A G 1077 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=20.71;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1110,129,0 chrIX 197241 . T A 1288 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=22.21;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1321,147,0 chrIX 197260 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=22.58;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1388,159,0 chrIX 197310 . T C 1094 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=21.04;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1127,126,0 chrIX 197377 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=14.46;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:886,102,0 chrIX 197446 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=16.17;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:987,108,0 chrIX 197448 . A G 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;MQRankSum=-2.234;QD=16.02;ReadPosRankSum=2.320;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:946,108,0 chrIX 197461 . T A 814 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.96;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:847,93,0 chrIX 197462 . A T 806 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.79;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:839,93,0 chrIX 197490 . G A 713 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=16.98;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:746,81,0 chrIX 197501 . T A 625 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=16.45;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:658,72,0 chrIX 197558 . A G 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=9.294;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-0.306;QD=15.65;ReadPosRankSum=1.631;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:69:565,69,0 chrIX 197560 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=16.80;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:69:621,69,0 chrIX 197573 . T A 560 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=12.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:69:593,69,0 chrIX 197782 . G T 951 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.29;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:984,108,0 chrIX 197823 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.93;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1363,150,0 chrIX 197949 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.35;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1976,222,0 chrIX 198073 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.36;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1388,162,0 chrIX 199158 . C T 2795 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.91;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2828,318,0 chrIX 199233 . C T 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.802;DP=110;Dels=0.00;FS=5.283;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.096;QD=22.26;ReadPosRankSum=-0.674;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2482,249,0 chrIX 199445 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.85;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1497,171,0 chrIX 199623 . T A 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=101;Dels=0.00;FS=14.317;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=-1.907;QD=12.87;ReadPosRankSum=2.553;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1333,144,0 chrIX 199628 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8892;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=14.53;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1413,162,0 chrIX 200335 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=19.06;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1596,174,0 chrIX 200346 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=17.23;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1325,153,0 chrIX 200366 . G T 1184 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.38;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1217,132,0 chrIX 200398 . T G 1093 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.82;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1126,129,0 chrIX 200410 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.32;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1110,129,0 chrIX 200428 . A C 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.565;QD=18.15;ReadPosRankSum=1.676;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1158,132,0 chrIX 201057 . T C 398 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=15.92;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:431,48,0 chrIX 201078 . A G 332 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=12.30;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:365,42,0 chrIX 201465 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.68;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1572,177,0 chrIX 201678 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.23;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1552,174,0 chrIX 201717 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.62;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1518,171,0 chrIX 202086 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.29;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1418,162,0 chrIX 202303 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.98;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1088,123,0 chrIX 202381 . A T 1018 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.25;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1051,117,0 chrIX 202393 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.04;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1044,120,0 chrIX 202695 . T G 1648 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.73;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1681,198,0 chrIX 203116 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.91;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1809,207,0 chrIX 203814 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3390;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.81;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2176,246,0 chrIX 204609 . A T 2375 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.20;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2408,267,0 chrIX 205192 . G A 855 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=30.5236;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=21.37;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:888,102,0 chrIX 205532 . C T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=17.8584;MLEAC=1;MLEAF=0.500;MQ=19.97;MQ0=26;MQRankSum=-3.085;QD=0.11;ReadPosRankSum=-1.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,95:300:62:62,0,2078 chrIX 205658 . A C 1076 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=61;QD=7.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1109,126,0 chrIX 205697 . T C 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;DP=153;Dels=0.00;FS=1.803;HaplotypeScore=14.3864;MLEAC=1;MLEAF=0.500;MQ=14.44;MQ0=89;MQRankSum=1.440;QD=0.91;ReadPosRankSum=1.029;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:112,41:153:99:169,0,445 chrIX 205994 . T C 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.203;DP=466;Dels=0.00;FS=8.721;HaplotypeScore=15.1812;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=119;MQRankSum=2.107;QD=0.25;ReadPosRankSum=0.503;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:414,50:466:99:148,0,3916 chrIX 206015 . T C 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.738;DP=374;Dels=0.00;FS=4.181;HaplotypeScore=46.5050;MLEAC=1;MLEAF=0.500;MQ=18.09;MQ0=157;MQRankSum=1.479;QD=0.39;ReadPosRankSum=-1.743;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:311,56:374:99:176,0,2219 chrIX 206018 . G A 726.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.658;DP=353;Dels=0.00;FS=0.000;HaplotypeScore=32.0775;MLEAC=1;MLEAF=0.500;MQ=17.59;MQ0=162;MQRankSum=4.398;QD=2.06;ReadPosRankSum=-0.703;SB=-2.200e+02 GT:AD:DP:GQ:PL 0/1:260,91:353:99:756,0,1437 chrIX 206309 . T C 885.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DP=482;Dels=0.00;FS=1.299;HaplotypeScore=13.7182;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=113;MQRankSum=-4.806;QD=1.84;ReadPosRankSum=0.208;SB=-4.140e+02 GT:AD:DP:GQ:PL 0/1:221,256:482:99:915,0,1133 chrIX 206310 . C T 854.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.081;DP=479;Dels=0.00;FS=2.052;HaplotypeScore=11.3521;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=113;MQRankSum=-5.123;QD=1.78;ReadPosRankSum=0.734;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:222,251:479:99:884,0,1141 chrIX 206333 . C T 657 filter AC=2;AF=1.00;AN=2;DP=343;Dels=0.00;FS=0.000;HaplotypeScore=9.1747;MLEAC=2;MLEAF=1.00;MQ=14.71;MQ0=106;QD=1.92;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,343:343:81:690,81,0 chrIX 206370 . T G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=214;Dels=0.00;FS=13.602;HaplotypeScore=27.7407;MLEAC=1;MLEAF=0.500;MQ=12.32;MQ0=111;MQRankSum=2.297;QD=0.42;ReadPosRankSum=1.222;SB=-5.225e+01 GT:AD:DP:GQ:PL 0/1:191,23:214:99:120,0,189 chrIX 206372 . A T 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;DP=214;Dels=0.00;FS=1.742;HaplotypeScore=27.7407;MLEAC=1;MLEAF=0.500;MQ=12.28;MQ0=113;MQRankSum=-2.794;QD=0.14;ReadPosRankSum=1.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,126:214:61:61,0,201 chrIX 206380 . G A 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.738;DP=187;Dels=0.00;FS=11.197;HaplotypeScore=20.3625;MLEAC=1;MLEAF=0.500;MQ=11.78;MQ0=108;MQRankSum=1.570;QD=0.49;ReadPosRankSum=1.526;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:167,18:187:99:122,0,142 chrIX 206400 . G C 232 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=10.53;MQ0=102;QD=1.63;SB=-1.410e-02 GT:AD:DP:GQ:PL 1/1:0,138:142:30:265,30,0 chrIX 206428 . G A 803.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.807;DP=219;Dels=0.00;FS=81.173;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=15.59;MQ0=134;MQRankSum=0.082;QD=3.67;ReadPosRankSum=0.544;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:53,166:219:92:833,0,92 chrIX 206502 . T C 3449.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.859;DP=514;Dels=0.00;FS=49.238;HaplotypeScore=14.4128;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=64;MQRankSum=4.682;QD=6.71;ReadPosRankSum=-0.142;SB=-1.112e+03 GT:AD:DP:GQ:PL 0/1:248,266:514:99:3449,0,3063 chrIX 206702 . T C 2831.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DP=288;Dels=0.00;FS=7.379;HaplotypeScore=20.8052;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=116;MQRankSum=0.584;QD=9.83;ReadPosRankSum=1.752;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:44,242:288:45:2861,0,45 chrIX 206802 . G T 1143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;DP=217;Dels=0.00;FS=81.604;HaplotypeScore=13.3214;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=58;MQRankSum=4.353;QD=5.27;ReadPosRankSum=-3.842;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:90,127:217:99:1173,0,1260 chrIX 206931 . G T 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=467;Dels=0.00;FS=2.035;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=11.49;MQ0=305;MQRankSum=-1.212;QD=0.49;ReadPosRankSum=0.432;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:331,133:467:99:260,0,636 chrIX 207453 . C T 1680.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=409;Dels=0.00;FS=177.679;HaplotypeScore=32.8126;MLEAC=1;MLEAF=0.500;MQ=30.69;MQ0=100;MQRankSum=-3.100;QD=4.11;ReadPosRankSum=-0.269;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,293:409:99:1710,0,1438 chrIX 207537 . T C 771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.521;DP=381;Dels=0.00;FS=10.899;HaplotypeScore=42.4102;MLEAC=1;MLEAF=0.500;MQ=27.58;MQ0=154;MQRankSum=-10.702;QD=2.02;ReadPosRankSum=-2.659;SB=-3.650e+02 GT:AD:DP:GQ:PL 0/1:130,245:381:99:801,0,2254 chrIX 207748 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;DP=314;Dels=0.00;FS=101.326;HaplotypeScore=18.9283;MLEAC=1;MLEAF=0.500;MQ=11.37;MQ0=223;MQRankSum=-3.009;QD=0.15;ReadPosRankSum=2.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:247,62:314:78:78,0,615 chrIX 207907 . T C 4812.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;DP=610;Dels=0.00;FS=53.680;HaplotypeScore=56.2221;MLEAC=1;MLEAF=0.500;MQ=33.66;MQ0=38;MQRankSum=-0.822;QD=7.89;ReadPosRankSum=1.982;SB=-2.563e+03 GT:AD:DP:GQ:PL 0/1:213,395:610:99:4812,0,1683 chrIX 208090 . T C 597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.744;DP=289;Dels=0.00;FS=1.982;HaplotypeScore=5.8951;MLEAC=1;MLEAF=0.500;MQ=12.62;MQ0=205;MQRankSum=0.385;QD=2.07;ReadPosRankSum=1.090;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:101,185:289:99:627,0,300 chrIX 208491 . C T 257.41 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=304;Dels=0.00;FS=28.235;HaplotypeScore=5.1433;MLEAC=2;MLEAF=1.00;MQ=6.69;MQ0=267;MQRankSum=-0.369;QD=0.85;ReadPosRankSum=1.780;SB=-4.213e-01 GT:AD:DP:GQ:PL 1/1:68,236:304:13:290,13,0 chrIX 208696 . T C 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=259;Dels=0.00;FS=163.233;HaplotypeScore=25.2833;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=81;MQRankSum=-0.705;QD=2.31;ReadPosRankSum=1.019;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:107,146:259:99:628,0,1840 chrIX 208741 . A G 3317.01 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=19.6631;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=89;QD=13.59;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,239:244:99:3317,387,0 chrIX 209019 . G A 1067.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.655;DP=282;Dels=0.00;FS=27.936;HaplotypeScore=38.6454;MLEAC=1;MLEAF=0.500;MQ=37.63;MQ0=60;MQRankSum=-6.065;QD=3.78;ReadPosRankSum=-6.461;SB=-3.080e+02 GT:AD:DP:GQ:PL 0/1:116,162:282:99:1097,0,2122 chrIX 209091 . C T 413.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;DP=678;Dels=0.00;FS=20.385;HaplotypeScore=63.3282;MLEAC=1;MLEAF=0.500;MQ=36.90;MQ0=70;MQRankSum=2.189;QD=0.61;ReadPosRankSum=-2.072;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:580,98:678:99:443,0,9818 chrIX 209166 . C T 7668.01 filter AC=2;AF=1.00;AN=2;DP=418;Dels=0.00;FS=0.000;HaplotypeScore=30.9091;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=39;QD=18.34;SB=-3.136e+03 GT:AD:DP:GQ:PL 1/1:1,413:418:99:7668,864,0 chrIX 209190 . G A 2080.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;DP=264;Dels=0.00;FS=84.029;HaplotypeScore=11.4077;MLEAC=1;MLEAF=0.500;MQ=34.31;MQ0=29;MQRankSum=1.377;QD=7.88;ReadPosRankSum=-0.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,151:264:99:2110,0,1731 chrIX 209202 . C T 1249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=206;Dels=0.00;FS=143.460;HaplotypeScore=7.2795;MLEAC=1;MLEAF=0.500;MQ=33.10;MQ0=33;MQRankSum=-0.330;QD=6.06;ReadPosRankSum=6.921;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,93:206:99:1279,0,1707 chrIX 209259 . A G 1069 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=29;QD=10.69;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1102,126,0 chrIX 209304 . C T 753.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.429;DP=219;Dels=0.00;FS=105.661;HaplotypeScore=5.3108;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=53;MQRankSum=-0.877;QD=3.44;ReadPosRankSum=3.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,115:219:99:783,0,1205 chrIX 209356 . C T 1990.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;DP=329;Dels=0.00;FS=21.693;HaplotypeScore=50.8369;MLEAC=1;MLEAF=0.500;MQ=36.18;MQ0=71;MQRankSum=-7.752;QD=6.05;ReadPosRankSum=-1.136;SB=-4.360e+02 GT:AD:DP:GQ:PL 0/1:116,213:329:99:2020,0,1564 chrIX 209365 . T C 1444.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;DP=281;Dels=0.00;FS=10.620;HaplotypeScore=31.7650;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=64;MQRankSum=-7.319;QD=5.14;ReadPosRankSum=4.536;SB=-4.610e+02 GT:AD:DP:GQ:PL 0/1:103,159:281:99:1474,0,1498 chrIX 209451 . C T 2765.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.434;DP=329;Dels=0.00;FS=347.149;HaplotypeScore=15.1064;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=29;MQRankSum=6.154;QD=8.40;ReadPosRankSum=-1.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,218:329:99:2795,0,1529 chrIX 209570 . T C 1775 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=34;QD=11.16;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,155:159:99:1808,201,0 chrIX 209637 . T G 1016.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;DP=150;Dels=0.00;FS=43.362;HaplotypeScore=14.3935;MLEAC=1;MLEAF=0.500;MQ=32.18;MQ0=28;MQRankSum=0.894;QD=6.77;ReadPosRankSum=-0.532;SB=-4.830e+02 GT:AD:DP:GQ:PL 0/1:70,80:150:99:1046,0,733 chrIX 209841 . T C 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=9.93;MQ0=130;MQRankSum=-2.004;QD=1.37;ReadPosRankSum=1.472;SB=-7.803e-03 GT:AD:DP:GQ:PL 0/1:63,107:170:32:263,0,32 chrIX 210293 . T C 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.95;MQ0=75;MQRankSum=-0.903;QD=0.41;ReadPosRankSum=0.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,50:170:99:100,0,441 chrIX 210351 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=16.15;MQ0=13;MQRankSum=-1.192;QD=1.36;ReadPosRankSum=1.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,29:73:77:129,0,77 chrIX 211064 . A G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=8.1318;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.679;QD=20.06;ReadPosRankSum=0.826;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1337,156,0 chrIX 211120 . T A 1869 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.52;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1902,207,0 chrIX 211150 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.74;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2142,243,0 chrIX 211352 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1869,213,0 chrIX 211502 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.28;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2135,231,0 chrIX 211652 . A G 3086 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.36;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3119,360,0 chrIX 212171 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.36;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1318,150,0 chrIX 212310 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.45;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1213,138,0 chrIX 212523 . A G 821 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:99:854,99,0 chrIX 213122 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.75;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1830,207,0 chrIX 213605 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.50;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1396,156,0 chrIX 213953 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1595,183,0 chrIX 214202 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.31;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2462,270,0 chrIX 214469 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.25;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1746,195,0 chrIX 214484 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.20;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1835,204,0 chrIX 214643 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.99;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1752,198,0 chrIX 214844 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=8.7789;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.29;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1323,141,0 chrIX 214890 . A T 725 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.97;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:758,84,0 chrIX 215993 . C T 2828 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.95;SB=-1.598e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2861,318,0 chrIX 216122 . T C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=2.855;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.767;QD=21.92;ReadPosRankSum=2.390;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1852,207,0 chrIX 216326 . A G 1945 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1978,222,0 chrIX 216471 . G C 1697 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.65;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1730,195,0 chrIX 216656 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.238;QD=22.40;ReadPosRankSum=1.650;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:974,111,0 chrIX 217264 . T C 2531 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.45;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2564,285,0 chrIX 217389 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.62;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1956,222,0 chrIX 217459 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.91;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1830,204,0 chrIX 217616 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8124;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.50;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2780,306,0 chrIX 218013 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.48;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1815,201,0 chrIX 218196 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.02;FS=3.953;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.014;QD=20.13;ReadPosRankSum=0.718;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1724,195,0 chrIX 218229 . A G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=6.189;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.767;QD=21.39;ReadPosRankSum=1.688;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1744,201,0 chrIX 218344 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.37;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1723,192,0 chrIX 218409 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.33;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1803,198,0 chrIX 218556 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.41;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1708,192,0 chrIX 218780 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=17.08;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1587,180,0 chrIX 218801 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.45;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1878,216,0 chrIX 219135 . T G 1815 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.62;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1848,207,0 chrIX 219186 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.89;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1823,198,0 chrIX 219851 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1439,156,0 chrIX 220346 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.7477;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.51;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1817,207,0 chrIX 220677 . A T 2060 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.02;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2093,228,0 chrIX 220939 . G C 810 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.87;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:843,96,0 chrIX 221031 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.77;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1715,183,0 chrIX 222311 . A T 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.766;QD=22.82;ReadPosRankSum=2.400;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2269,240,0 chrIX 222583 . A G 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.208;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.693;QD=21.19;ReadPosRankSum=1.694;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1940,222,0 chrIX 223114 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.07;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1953,219,0 chrIX 223281 . G T 1871 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.09;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1904,210,0 chrIX 223286 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=19.19;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1894,210,0 chrIX 223314 . T G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-1.575;QD=17.56;ReadPosRankSum=1.693;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1578,177,0 chrIX 223333 . T A 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.664;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.540;QD=15.21;ReadPosRankSum=1.695;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1463,159,0 chrIX 223465 . C G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=91;Dels=0.00;FS=3.812;HaplotypeScore=7.6970;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.097;QD=20.16;ReadPosRankSum=0.564;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1868,213,0 chrIX 223474 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.90;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1705,198,0 chrIX 223504 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=16.78;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1493,162,0 chrIX 223691 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.1186;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.02;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2235,243,0 chrIX 224455 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.940;DP=77;Dels=0.00;FS=9.158;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=1.044;QD=17.99;ReadPosRankSum=1.940;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:4,73:77:99:1418,137,0 chrIX 224466 . C G 1458 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.36;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1491,168,0 chrIX 224632 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=3.395;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.147;QD=19.20;ReadPosRankSum=1.674;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1185,135,0 chrIX 224666 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.43;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1177,126,0 chrIX 224705 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.16;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1608,183,0 chrIX 224745 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.35;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1538,177,0 chrIX 224827 . A G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=3.050;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.084;QD=21.15;ReadPosRankSum=2.349;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1577,183,0 chrIX 224914 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.68;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1194,135,0 chrIX 224926 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.50;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1069,120,0 chrIX 224976 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.31;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:93:820,93,0 chrIX 225226 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.47;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1128,129,0 chrIX 225363 . T G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.584;DP=60;Dels=0.00;FS=20.120;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.016;QD=18.00;ReadPosRankSum=3.664;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:5,55:60:99:1113,126,0 chrIX 225885 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.35;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:726,81,0 chrIX 226086 . G T 736 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=23.00;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:769,84,0 chrIX 226236 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.56;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1206,129,0 chrIX 226583 . C T 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.096;QD=24.89;ReadPosRankSum=-1.107;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1850,182,0 chrIX 226854 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.96;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1207,129,0 chrIX 227051 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.24;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1501,162,0 chrIX 227053 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.67;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1529,162,0 chrIX 227151 . C T 1047 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.39;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1080,120,0 chrIX 227273 . G A 556 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.86;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:589,63,0 chrIX 227301 . A T 642 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.05;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:675,72,0 chrIX 227309 . C T 579 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.47;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:612,66,0 chrIX 228015 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.93;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1938,222,0 chrIX 228090 . G T 2558 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.91;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2591,291,0 chrIX 228239 . T C 2060 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.62;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2093,243,0 chrIX 228423 . A T 1643 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.54;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1676,195,0 chrIX 228430 . A C 1764 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.28;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1797,201,0 chrIX 228506 . C A 1582 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.82;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1615,183,0 chrIX 228759 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.01;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2104,231,0 chrIX 228786 . T C 2073 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.59;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2106,240,0 chrIX 228903 . A G 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.9412;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.498;QD=18.51;ReadPosRankSum=1.685;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1403,159,0 chrIX 229515 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.592;QD=22.10;ReadPosRankSum=2.379;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1558,174,0 chrIX 229838 . A T 1113 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1146,129,0 chrIX 230147 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=10.645;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.015;QD=21.25;ReadPosRankSum=1.673;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1308,144,0 chrIX 230680 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.33;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2486,276,0 chrIX 230953 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.290;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.220;QD=17.20;ReadPosRankSum=1.683;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1254,144,0 chrIX 230993 . C A 1777 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.32;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1810,198,0 chrIX 231757 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=21.48;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1365,153,0 chrIX 232203 . G C 1288 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.00;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1321,147,0 chrIX 232425 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.03;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1708,186,0 chrIX 232438 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=4.453;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.694;QD=17.42;ReadPosRankSum=1.694;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1653,189,0 chrIX 232458 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.524;QD=15.66;ReadPosRankSum=1.697;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1599,180,0 chrIX 232502 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.43;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1931,207,0 chrIX 232796 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.22;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1667,183,0 chrIX 233042 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.989;DP=76;Dels=0.00;FS=5.870;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.663;QD=0.22;ReadPosRankSum=-3.082;SB=-4.976e+01 GT:AD:DP:GQ:PL 1/1:72,4:76:6:48,6,0 chrIX 233049 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.59;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1409,162,0 chrIX 233111 . C T 850 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.71;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:883,102,0 chrIX 233537 . A T 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.29;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1566,174,0 chrIX 233549 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.88;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1453,162,0 chrIX 233563 . A G 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.046;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=0.052;QD=18.53;ReadPosRankSum=1.575;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1256,141,0 chrIX 233564 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.35;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1126,126,0 chrIX 233705 . A T 1497 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.03;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1530,171,0 chrIX 233990 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.54;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1596,183,0 chrIX 234059 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.97;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1494,171,0 chrIX 234140 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.69;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1168,126,0 chrIX 234164 . T C 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.773;QD=16.18;ReadPosRankSum=1.679;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1085,126,0 chrIX 234193 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=17.32;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1280,141,0 chrIX 234893 . G T 1336 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1369,153,0 chrIX 234965 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1425,162,0 chrIX 236044 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.7935;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.63;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1976,210,0 chrIX 236306 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=11.39;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1024,117,0 chrIX 236624 . T C 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=72;Dels=0.00;FS=9.411;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.329;QD=19.64;ReadPosRankSum=2.901;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:99:1447,159,0 chrIX 237401 . C G 1505 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.34;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1538,174,0 chrIX 237441 . G C 1704 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.57;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1737,195,0 chrIX 237594 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.01;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1440,159,0 chrIX 237799 . A C 1344 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.06;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1377,156,0 chrIX 238372 . A G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.247;QD=19.37;ReadPosRankSum=1.697;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1970,225,0 chrIX 238834 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.20;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1134,126,0 chrIX 238849 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.56;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1139,123,0 chrIX 239011 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.507;QD=20.38;ReadPosRankSum=1.597;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1602,183,0 chrIX 239275 . A G 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=3.889;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.537;QD=21.58;ReadPosRankSum=1.683;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1587,177,0 chrIX 239356 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.62;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1698,195,0 chrIX 239431 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=15.0027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.86;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1640,186,0 chrIX 239659 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.94;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2426,273,0 chrIX 239701 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=112;Dels=0.00;FS=3.027;HaplotypeScore=11.9484;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.275;QD=17.81;ReadPosRankSum=2.384;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2028,228,0 chrIX 240268 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9286;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.10;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2038,228,0 chrIX 241314 . T C 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=72;Dels=0.00;FS=5.318;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=2.176;QD=19.61;ReadPosRankSum=3.184;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:99:1445,162,0 chrIX 241839 . G T 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.49;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:96:99:2000,222,0 chrIX 241989 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.91;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1685,186,0 chrIX 242419 . G C 1245 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.58;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1278,144,0 chrIX 242535 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1198,132,0 chrIX 242713 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1939,210,0 chrIX 242863 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.495;QD=22.96;ReadPosRankSum=1.683;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1663,189,0 chrIX 242917 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1228,138,0 chrIX 243097 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.21;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1818,204,0 chrIX 243202 . A G 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.609;QD=16.33;ReadPosRankSum=2.350;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1666,192,0 chrIX 243264 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.40;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1542,177,0 chrIX 243482 . A C 1099 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.17;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1132,129,0 chrIX 243933 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1143,126,0 chrIX 244494 . C A 884 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=12.63;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:917,105,0 chrIX 244618 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.00;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1293,144,0 chrIX 244753 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.54;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1127,126,0 chrIX 244765 . T G 1004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.717;QD=17.02;ReadPosRankSum=1.673;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1037,117,0 chrIX 245379 . C G 1199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6225;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.17;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1232,141,0 chrIX 245567 . G C 1144 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.16;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1177,135,0 chrIX 245601 . A T 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.645;QD=15.92;ReadPosRankSum=1.664;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:90:845,90,0 chrIX 245765 . C T 406 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=12.69;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:32:48:439,48,0 chrIX 245788 . A T 472 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=14.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:54:505,54,0 chrIX 245930 . G A 380 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.00;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:413,45,0 chrIX 245931 . G A 365 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.25;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:398,45,0 chrIX 246179 . T A 1186 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=26.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1219,135,0 chrIX 246220 . T A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=1;MQRankSum=1.380;QD=1.99;ReadPosRankSum=-1.380;SB=1.27 GT:AD:DP:GQ:PL 1/1:5,2:7:6:45,6,0 chrIX 246592 . A G 685 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=10.87;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:81:718,81,0 chrIX 246643 . A C 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.09;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1319,159,0 chrIX 247032 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.87;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1241,138,0 chrIX 247121 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.45;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1342,150,0 chrIX 247126 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=15.92;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1275,144,0 chrIX 247484 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.76;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1041,111,0 chrIX 247556 . A C 1324 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.91;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1357,153,0 chrIX 247608 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.34;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1177,129,0 chrIX 247613 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=15.93;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1180,129,0 chrIX 247623 . G A 853 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=12.01;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:886,99,0 chrIX 247626 . G A 879 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=12.93;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:912,99,0 chrIX 247651 . A G 813 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=13.11;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:846,96,0 chrIX 247683 . C T 874 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=14.57;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:907,99,0 chrIX 247822 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=16.28;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1254,141,0 chrIX 247828 . A T 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=102;Dels=0.00;FS=4.597;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.035;QD=12.38;ReadPosRankSum=1.626;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1296,150,0 chrIX 247879 . T A 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=-0.034;QD=19.34;ReadPosRankSum=1.698;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2006,216,0 chrIX 247894 . C G 1713 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=15.57;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1746,201,0 chrIX 247899 . A C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=8.992;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.421;QD=16.10;ReadPosRankSum=1.701;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:1836,213,0 chrIX 248675 . T A 511 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=15.48;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:60:544,60,0 chrIX 248682 . A G 474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-0.619;QD=16.93;ReadPosRankSum=1.609;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:57:507,57,0 chrIX 249665 . A T 1303 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.45;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1336,150,0 chrIX 250668 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.59;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1894,213,0 chrIX 250683 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.98;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1567,180,0 chrIX 250881 . T C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=114;Dels=0.00;FS=3.044;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.421;QD=19.33;ReadPosRankSum=2.405;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:2,108:114:99:2237,255,0 chrIX 250905 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.90;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2398,258,0 chrIX 250950 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.2293;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.46;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2504,276,0 chrIX 251148 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.36;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1272,138,0 chrIX 251784 . T C 796 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:829,96,0 chrIX 251868 . T C 1229 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1262,141,0 chrIX 251980 . T C 2729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.116;HaplotypeScore=7.0018;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.704;QD=21.83;ReadPosRankSum=1.704;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2762,315,0 chrIX 252351 . A G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.887;QD=19.34;ReadPosRankSum=1.690;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1619,183,0 chrIX 252810 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.30;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2133,243,0 chrIX 253142 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.93;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2210,252,0 chrIX 253199 . C G 1944 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.34;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1977,225,0 chrIX 253318 . T C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=83;Dels=0.00;FS=3.575;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.084;QD=17.69;ReadPosRankSum=1.648;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1501,168,0 chrIX 253614 . C G 1203 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.71;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1236,141,0 chrIX 253713 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.96;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1203,132,0 chrIX 254261 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.39;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1466,162,0 chrIX 254315 . G A 1157 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=18.08;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1190,129,0 chrIX 254316 . G T 1191 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=18.32;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1224,132,0 chrIX 254317 . G T 1141 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=16.78;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1174,132,0 chrIX 254748 . T A 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.268;QD=19.46;ReadPosRankSum=1.625;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1960,213,0 chrIX 255387 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.35;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2158,237,0 chrIX 255654 . A C 1413 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1446,165,0 chrIX 256045 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:63:554,63,0 chrIX 256089 . G A 410 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.08;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:443,48,0 chrIX 256090 . C T 435 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.91;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:468,51,0 chrIX 256114 . A G 527 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.47;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:63:560,63,0 chrIX 256581 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.04;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2077,234,0 chrIX 256613 . C A 2321 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.18;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2354,255,0 chrIX 256643 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.7098;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=18.52;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2459,270,0 chrIX 256683 . C T 2546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=13.0292;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.706;QD=18.86;ReadPosRankSum=1.365;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,131:135:99:2579,279,0 chrIX 256921 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.74;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1630,180,0 chrIX 256951 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.18;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1833,201,0 chrIX 257357 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.84;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1178,126,0 chrIX 257616 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.18;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1169,126,0 chrIX 259266 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.60;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2022,225,0 chrIX 259323 . T A 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-0.100;QD=23.22;ReadPosRankSum=1.692;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2053,225,0 chrIX 259533 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3652;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.27;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1440,159,0 chrIX 259692 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.024;QD=19.58;ReadPosRankSum=1.683;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1423,165,0 chrIX 259701 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.69;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1490,165,0 chrIX 259923 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.540;QD=21.33;ReadPosRankSum=-0.449;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1185,135,0 chrIX 259951 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=34.5699;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.87;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1014,117,0 chrIX 260232 . C T 1963 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.31;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1996,216,0 chrIX 260247 . A C 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=4.724;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.941;QD=20.84;ReadPosRankSum=1.431;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1971,225,0 chrIX 260291 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.99;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1572,177,0 chrIX 260293 . C A 1480 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.97;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1513,165,0 chrIX 260331 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=16.91;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1166,132,0 chrIX 260350 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.25;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1188,129,0 chrIX 260376 . C T 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.466;QD=19.45;ReadPosRankSum=1.253;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1297,141,0 chrIX 260488 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.10;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1983,216,0 chrIX 261061 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=9.9795;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.13;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1175,129,0 chrIX 262873 . C A 2443 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.62;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2476,270,0 chrIX 263053 . T A 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=96;Dels=0.00;FS=9.009;HaplotypeScore=5.9519;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.578;QD=21.96;ReadPosRankSum=1.806;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:4,92:96:99:2141,234,0 chrIX 263059 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.4343;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.91;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1924,216,0 chrIX 263188 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.47;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1987,216,0 chrIX 263479 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.87;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1285,141,0 chrIX 263590 . T A 1300 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.31;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1333,147,0 chrIX 263683 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.47;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1649,189,0 chrIX 263690 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.364;QD=20.00;ReadPosRankSum=1.689;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1673,186,0 chrIX 263950 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.45;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2098,231,0 chrIX 264599 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1384,156,0 chrIX 264781 . A G 452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.605;QD=15.59;ReadPosRankSum=1.476;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:1,26:29:54:485,54,0 chrIX 265508 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5942;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.12;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2809,309,0 chrIX 265732 . A C 1896 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.17;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1929,219,0 chrIX 266255 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.18;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1728,192,0 chrIX 266696 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.71;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2122,234,0 chrIX 266855 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.27;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1555,177,0 chrIX 266933 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.01;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1730,186,0 chrIX 267764 . A G 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=74;Dels=0.00;FS=3.461;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.342;QD=17.20;ReadPosRankSum=1.683;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1306,153,0 chrIX 268176 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.89;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2262,249,0 chrIX 268278 . C G 3334.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=21.8155;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.33;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3334,375,0 chrIX 268483 . G C 1199 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.65;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1232,144,0 chrIX 268579 . A G 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.491;QD=20.69;ReadPosRankSum=1.703;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2537,285,0 chrIX 268604 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=72.6784;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.07;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1786,201,0 chrIX 268690 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.2318;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.549;QD=20.05;ReadPosRankSum=2.396;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1878,213,0 chrIX 268791 . T C 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=4.063;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.074;QD=18.75;ReadPosRankSum=1.688;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1514,171,0 chrIX 269157 . C A 1912 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.21;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1945,219,0 chrIX 269349 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=21.5949;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=14.95;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2051,234,0 chrIX 269580 . T C 2820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=6.178;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.220;QD=20.14;ReadPosRankSum=2.397;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2853,324,0 chrIX 269763 . C G 2691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=147;Dels=0.00;FS=4.025;HaplotypeScore=18.7019;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.684;QD=18.31;ReadPosRankSum=1.636;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,143:147:99:2724,315,0 chrIX 269829 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.62;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2584,279,0 chrIX 269916 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.1811;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.76;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2182,246,0 chrIX 269976 . T C 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.978;QD=19.78;ReadPosRankSum=1.698;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2031,231,0 chrIX 270193 . T C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=117;Dels=0.00;FS=4.112;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.433;QD=14.64;ReadPosRankSum=1.643;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:1746,198,0 chrIX 270435 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.805;QD=16.97;ReadPosRankSum=1.683;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1238,141,0 chrIX 270588 . C A 2231 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2264,261,0 chrIX 270694 . T A 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.328;QD=15.74;ReadPosRankSum=1.670;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1780,221,0 chrIX 271273 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.560;QD=21.75;ReadPosRankSum=1.579;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1534,171,0 chrIX 271556 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.04;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2303,264,0 chrIX 271960 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.31;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1905,219,0 chrIX 272178 . A T 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.170;QD=18.44;ReadPosRankSum=1.639;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1416,156,0 chrIX 272205 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.36;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1369,147,0 chrIX 272218 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0644;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.93;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1378,153,0 chrIX 272369 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.9789;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.72;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1923,210,0 chrIX 273085 . T A 1833 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.12;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1866,204,0 chrIX 273112 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.10;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1362,150,0 chrIX 273183 . A C 1340 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.93;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1373,156,0 chrIX 273624 . C T 3806.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.39;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,169:170:99:3806,420,0 chrIX 274009 . G A 2838 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=16.31;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,173:174:99:2871,321,0 chrIX 274203 . T C 599 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:632,72,0 chrIX 274516 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.69;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2309,252,0 chrIX 274783 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.08;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1448,165,0 chrIX 274972 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.42;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1251,144,0 chrIX 275112 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.32;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2388,273,0 chrIX 275129 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.02;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1332,156,0 chrIX 275131 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.15;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1323,147,0 chrIX 275301 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.00;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1413,159,0 chrIX 275372 . A G 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.457;QD=18.70;ReadPosRankSum=1.693;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1679,192,0 chrIX 275972 . A G 2992 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.81;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3025,342,0 chrIX 276080 . C T 3312.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.84;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3312,366,0 chrIX 276311 . T C 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=107;Dels=0.00;FS=5.027;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.511;QD=15.28;ReadPosRankSum=1.633;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1668,192,0 chrIX 276713 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.93;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1807,210,0 chrIX 277151 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.20;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1569,174,0 chrIX 277238 . A G 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.403;QD=22.29;ReadPosRankSum=1.650;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:969,108,0 chrIX 277347 . T C 724 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.57;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:757,87,0 chrIX 277526 . T C 255 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.14;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:288,33,0 chrIX 277761 . A C 544 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.55;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:577,66,0 chrIX 277770 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.79;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:69:620,69,0 chrIX 277905 . C A 2063 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2096,237,0 chrIX 278242 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=18.63;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1728,195,0 chrIX 278371 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.24;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1892,210,0 chrIX 278518 . T C 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.3515;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.54;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2467,279,0 chrIX 278878 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.01;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2261,252,0 chrIX 278890 . A G 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.092;QD=16.37;ReadPosRankSum=1.703;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:1998,228,0 chrIX 278938 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.93;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2058,228,0 chrIX 278998 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.12;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2059,219,0 chrIX 279163 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.74;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1920,216,0 chrIX 279199 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.35;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1755,192,0 chrIX 279526 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.42;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1503,174,0 chrIX 279602 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.91;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1889,213,0 chrIX 280264 . C T 698 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.15;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:731,81,0 chrIX 280790 . A G 958 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.74;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:991,114,0 chrIX 280877 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1440,165,0 chrIX 281719 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.1545;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.45;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1730,189,0 chrIX 281888 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.4164;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2227,261,0 chrIX 281969 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2003,219,0 chrIX 282578 . A G 656 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.74;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:689,78,0 chrIX 282798 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1007,114,0 chrIX 282901 . G C 637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.617;QD=21.23;ReadPosRankSum=1.617;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:75:670,75,0 chrIX 283497 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1007,114,0 chrIX 283562 . T C 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=3.478;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.096;QD=21.86;ReadPosRankSum=1.662;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1104,123,0 chrIX 283728 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.07;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:87:801,87,0 chrIX 283758 . T A 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.266;DP=52;Dels=0.00;FS=4.607;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.800;QD=14.62;ReadPosRankSum=1.066;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:90:793,90,0 chrIX 283774 . T C 766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.825;QD=18.24;ReadPosRankSum=1.155;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:799,90,0 chrIX 283818 . G T 1123 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.05;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1156,126,0 chrIX 283964 . G C 1307 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1340,153,0 chrIX 284073 . A T 1198 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.72;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1231,132,0 chrIX 284092 . A G 1074 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=17.05;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1107,129,0 chrIX 284178 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1095,126,0 chrIX 284643 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.71;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2125,228,0 chrIX 284844 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.79;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1460,162,0 chrIX 284955 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.22;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2033,228,0 chrIX 285005 . C G 1828 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.51;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1861,210,0 chrIX 285060 . T A 1868 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.09;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1901,210,0 chrIX 285218 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.16;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1263,138,0 chrIX 285229 . A C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.679;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.590;QD=18.81;ReadPosRankSum=2.379;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1331,147,0 chrIX 285236 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.27;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1305,147,0 chrIX 285394 . C G 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.69;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,168,0 chrIX 285457 . C G 1396 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=20.23;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1429,162,0 chrIX 285554 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=3.701;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.306;QD=20.17;ReadPosRankSum=1.630;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1445,165,0 chrIX 285783 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.44;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1934,222,0 chrIX 285890 . T G 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.944;DP=102;Dels=0.00;FS=128.736;HaplotypeScore=9.3401;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.976;QD=0.33;ReadPosRankSum=-2.684;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,31:102:64:64,0,1192 chrIX 285929 . A G 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.179;DP=83;Dels=0.00;FS=14.444;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.393;QD=19.22;ReadPosRankSum=3.264;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:99:1628,186,0 chrIX 286222 . C A 1769 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.17;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1802,195,0 chrIX 286810 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.51;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1428,153,0 chrIX 286862 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.30;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1607,174,0 chrIX 286869 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.53;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1558,168,0 chrIX 287126 . T C 2841 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.55;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2874,327,0 chrIX 287156 . A G 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=125;Dels=0.00;FS=9.247;HaplotypeScore=13.1144;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.973;QD=20.61;ReadPosRankSum=3.175;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:4,120:125:99:2609,300,0 chrIX 287429 . A G 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.840;QD=20.65;ReadPosRankSum=1.698;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2119,234,0 chrIX 287904 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.66;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1810,201,0 chrIX 288084 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.11;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1156,126,0 chrIX 288099 . T A 1184 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.50;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1217,132,0 chrIX 288210 . C G 1633 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.67;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1666,189,0 chrIX 288825 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1290,153,0 chrIX 289127 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.95;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1562,165,0 chrIX 289162 . T A 1692 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.39;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1725,192,0 chrIX 289409 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.36;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2314,252,0 chrIX 290108 . G C 1687 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.33;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1720,192,0 chrIX 290536 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.7882;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.77;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1695,186,0 chrIX 290668 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.07;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1234,141,0 chrIX 290902 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.07;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1600,177,0 chrIX 291676 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.25;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1785,201,0 chrIX 291981 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.28;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1480,174,0 chrIX 292055 . C T 749 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=14.40;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:87:782,87,0 chrIX 292071 . G A 658 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=12.42;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:78:691,78,0 chrIX 292269 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.07;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1117,126,0 chrIX 292307 . G A 909 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=12.99;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:942,102,0 chrIX 292346 . T C 768 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=10.82;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:801,93,0 chrIX 292353 . A C 828 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=10.89;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:861,99,0 chrIX 292364 . T C 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-0.235;QD=9.44;ReadPosRankSum=1.689;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:90:798,90,0 chrIX 292383 . G T 1344 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.6577;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=15.10;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1377,150,0 chrIX 292764 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.10;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2143,243,0 chrIX 292870 . A G 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=119;Dels=0.00;FS=4.257;HaplotypeScore=9.0007;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.232;QD=18.67;ReadPosRankSum=2.483;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:5,114:119:99:2255,236,0 chrIX 292989 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.51;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1668,180,0 chrIX 293010 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.04;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1653,180,0 chrIX 293166 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.287;QD=19.27;ReadPosRankSum=1.237;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1401,156,0 chrIX 293328 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.08;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1499,168,0 chrIX 293533 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.68;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1464,165,0 chrIX 293640 . T A 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.58;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1659,180,0 chrIX 293679 . A G 1478 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6060;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1511,171,0 chrIX 293712 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.19;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1305,147,0 chrIX 293812 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6290;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=16.95;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1287,138,0 chrIX 293922 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=14.94;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1183,135,0 chrIX 294090 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.30;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2171,237,0 chrIX 295324 . A G 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=3.023;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.073;QD=19.14;ReadPosRankSum=2.362;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1660,189,0 chrIX 295371 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.89;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1435,165,0 chrIX 295443 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.102;QD=19.66;ReadPosRankSum=1.693;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1802,207,0 chrIX 295850 . A T 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=76;Dels=0.00;FS=2.430;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.238;QD=20.67;ReadPosRankSum=3.242;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1604,174,0 chrIX 295934 . T C 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.489;QD=19.81;ReadPosRankSum=1.672;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1162,132,0 chrIX 296101 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.31;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1617,177,0 chrIX 296155 . T C 1504 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1537,174,0 chrIX 296298 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.195;QD=22.85;ReadPosRankSum=1.683;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1678,189,0 chrIX 296453 . T A 1760 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.46;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1793,195,0 chrIX 296620 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.76;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1756,192,0 chrIX 296749 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.41;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1644,192,0 chrIX 297148 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.47;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:2083,228,0 chrIX 297175 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;DP=91;Dels=0.00;FS=9.479;HaplotypeScore=5.1091;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.562;QD=16.65;ReadPosRankSum=1.933;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:1548,151,0 chrIX 297592 . T C 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.927;QD=21.67;ReadPosRankSum=1.692;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1897,213,0 chrIX 297643 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.74;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1983,225,0 chrIX 297796 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1474,168,0 chrIX 297865 . A G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.652;QD=21.94;ReadPosRankSum=1.692;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1920,219,0 chrIX 297934 . A G 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=12.367;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.350;QD=21.72;ReadPosRankSum=2.410;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2704,306,0 chrIX 298123 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.53;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2035,231,0 chrIX 298405 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.32;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2207,252,0 chrIX 298465 . C A 1769 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.10;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1802,195,0 chrIX 298765 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1672,186,0 chrIX 298867 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.65;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1730,189,0 chrIX 299044 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=17.75;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2128,243,0 chrIX 299047 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.59;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2208,243,0 chrIX 299116 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.14;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1301,147,0 chrIX 299287 . T A 2426 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.10;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2459,267,0 chrIX 300209 . T A 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.599;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;MQRankSum=0.903;QD=17.01;ReadPosRankSum=1.683;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1258,138,0 chrIX 300210 . T A 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=4.009;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=1.637;QD=17.25;ReadPosRankSum=1.353;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1327,150,0 chrIX 300384 . G A 720 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=20.00;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:84:753,84,0 chrIX 300390 . T G 679 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=21.90;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:78:712,78,0 chrIX 300392 . C G 656 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=21.16;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:78:689,78,0 chrIX 300407 . A G 364 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=-0.173;QD=18.20;ReadPosRankSum=1.561;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:45:397,45,0 chrIX 300410 . A G 353 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;MQRankSum=0.639;QD=18.58;ReadPosRankSum=1.552;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:42:386,42,0 chrIX 300414 . T A 387 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=20.37;SB=-6.725e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:420,45,0 chrIX 300426 . T G 370 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=17.62;SB=-6.640e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:403,48,0 chrIX 300458 . A C 332 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=13.28;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:365,45,0 chrIX 300469 . A G 467 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=26.9087;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=1;QD=14.15;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:60:500,60,0 chrIX 300482 . G A 583 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=1;QD=15.34;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:72:616,72,0 chrIX 300557 . C A 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DP=35;Dels=0.00;FS=24.166;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=5;MQRankSum=-1.800;QD=7.69;ReadPosRankSum=-1.007;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:7,28:35:54:299,0,54 chrIX 300562 . A G 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;DP=30;Dels=0.00;FS=23.617;HaplotypeScore=3.5521;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=4;MQRankSum=-2.208;QD=7.87;ReadPosRankSum=0.985;SB=-3.003e+00 GT:AD:DP:GQ:PL 0/1:8,21:30:59:266,0,59 chrIX 300588 . A G 175.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;DP=21;Dels=0.00;FS=21.239;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=0;MQRankSum=-2.271;QD=8.33;ReadPosRankSum=3.179;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:5,16:21:48:205,0,48 chrIX 300591 . C A 292 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=14.60;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:325,36,0 chrIX 300601 . A T 245 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=12.25;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:278,30,0 chrIX 300634 . C T 244 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=12.20;SB=-1.518e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:277,30,0 chrIX 300654 . A C 252 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.00;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:285,33,0 chrIX 300655 . T C 263 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.61;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:296,33,0 chrIX 300659 . C T 262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=14.56;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:295,33,0 chrIX 300675 . C T 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=13.93;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:242,27,0 chrIX 300677 . C T 201.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=13.40;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:234,27,0 chrIX 300680 . G A 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=13.93;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:242,27,0 chrIX 301483 . A T 249 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=5.66;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:33:282,33,0 chrIX 301505 . T C 430 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=9.56;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:463,54,0 chrIX 301712 . C A 1527 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=15.74;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1560,168,0 chrIX 301718 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=15.35;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1461,162,0 chrIX 301792 . T C 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-0.750;QD=17.90;ReadPosRankSum=2.410;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2252,252,0 chrIX 301797 . G A 2296 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=19.62;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2329,255,0 chrIX 301848 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=15.69;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1429,162,0 chrIX 301873 . T A 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;MQRankSum=-1.601;QD=17.32;ReadPosRankSum=1.688;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1401,156,0 chrIX 301877 . T C 1255 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=16.30;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1288,150,0 chrIX 301894 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=15.05;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1267,141,0 chrIX 301924 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=11.42;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1209,138,0 chrIX 301934 . A G 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=10.755;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-1.619;QD=12.64;ReadPosRankSum=2.934;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1373,159,0 chrIX 301961 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=13.63;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1410,162,0 chrIX 301970 . T A 1454 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=12.98;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1487,168,0 chrIX 302021 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=20.25;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2524,273,0 chrIX 302080 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.29;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2465,285,0 chrIX 302227 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.77;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2191,252,0 chrIX 302255 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=17.74;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2268,264,0 chrIX 302272 . G C 2182 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=15.70;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,133:139:99:2215,258,0 chrIX 302298 . A C 2517 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=16.78;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2550,291,0 chrIX 302350 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=17.19;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1752,195,0 chrIX 302378 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=12.42;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:952,108,0 chrIX 302383 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=12.64;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:956,105,0 chrIX 302402 . A G 754 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=10.47;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:90:787,90,0 chrIX 302407 . T A 815 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.19;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:96:848,96,0 chrIX 302411 . A T 769 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.05;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:93:802,93,0 chrIX 302421 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=9.46;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:903,99,0 chrIX 302464 . T A 1132 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=12.04;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1165,132,0 chrIX 302471 . G T 1098 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=12.20;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1131,126,0 chrIX 302472 . T C 1091 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=-1.544;QD=11.86;ReadPosRankSum=1.657;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1124,126,0 chrIX 302476 . T C 1086 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=107;Dels=0.00;FS=8.634;HaplotypeScore=3.7742;MLEAC=2;MLEAF=1.00;MQ=38.21;MQ0=0;MQRankSum=-2.488;QD=10.15;ReadPosRankSum=3.309;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:4,103:107:99:1119,129,0 chrIX 302542 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=14.72;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1505,174,0 chrIX 302633 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.28;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2190,246,0 chrIX 302871 . T G 2159 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.61;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2192,246,0 chrIX 303153 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=5.6643;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.225;QD=20.04;ReadPosRankSum=1.690;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1676,189,0 chrIX 303483 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.95;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1454,159,0 chrIX 304231 . C G 1219 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1252,141,0 chrIX 304314 . T A 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=5.836;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.130;QD=21.04;ReadPosRankSum=1.682;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1485,159,0 chrIX 305089 . T C 971 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.42;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1004,114,0 chrIX 305101 . T G 879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.574;DP=50;Dels=0.00;FS=5.547;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.062;QD=17.58;ReadPosRankSum=2.819;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:3,47:50:99:912,102,0 chrIX 305620 . A G 668 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:701,78,0 chrIX 305776 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.534;QD=22.57;ReadPosRankSum=1.683;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1613,183,0 chrIX 306037 . C A 2066 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2099,234,0 chrIX 306523 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.22;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1788,204,0 chrIX 306619 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.71;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:960,111,0 chrIX 306841 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.36;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1795,201,0 chrIX 307120 . A G 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=62;Dels=0.00;FS=6.992;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.498;QD=21.42;ReadPosRankSum=2.371;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1361,153,0 chrIX 307366 . G A 747 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=15.89;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:780,87,0 chrIX 307735 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.99;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1712,189,0 chrIX 307741 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=85;Dels=0.00;FS=2.974;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.391;QD=17.66;ReadPosRankSum=1.406;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1534,177,0 chrIX 307943 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.45;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2328,249,0 chrIX 307976 . A C 2575 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8632;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=19.66;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2608,294,0 chrIX 308167 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=13.46;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1608,186,0 chrIX 308179 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=13.32;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1432,162,0 chrIX 308190 . A G 1193 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=109;Dels=0.00;FS=6.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=-2.547;QD=10.94;ReadPosRankSum=2.936;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:1226,141,0 chrIX 308198 . C T 1113 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=11.24;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1146,126,0 chrIX 308199 . T C 1149 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.49;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1182,135,0 chrIX 308203 . A G 1187 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=11.52;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1220,138,0 chrIX 308369 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.98;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1334,144,0 chrIX 308383 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.68;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1332,153,0 chrIX 308827 . T C 2727 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.11;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2760,315,0 chrIX 310178 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4337;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.46;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2351,255,0 chrIX 310223 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.88;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2100,240,0 chrIX 310412 . G C 1063 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.61;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1096,123,0 chrIX 310576 . G A 795 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:828,90,0 chrIX 310671 . A G 879 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.44;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:912,105,0 chrIX 310732 . T G 926 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.13;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:959,108,0 chrIX 310769 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.06;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1128,123,0 chrIX 310807 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.09;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:977,111,0 chrIX 310816 . A T 992 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.72;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1025,117,0 chrIX 310893 . C A 1124 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.48;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1157,126,0 chrIX 311139 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.466;QD=20.42;ReadPosRankSum=1.599;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1095,129,0 chrIX 311143 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.45;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1122,123,0 chrIX 311489 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.26;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1500,162,0 chrIX 311545 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.72;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1749,198,0 chrIX 311953 . T G 1379 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.28;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1412,156,0 chrIX 312013 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.26;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1451,159,0 chrIX 312474 . A G 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.553;QD=18.54;ReadPosRankSum=1.659;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,46:50:99:960,111,0 chrIX 312591 . A T 2141 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.82;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2174,246,0 chrIX 312613 . A T 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.859;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.279;QD=20.18;ReadPosRankSum=1.667;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2192,234,0 chrIX 313898 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.36;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2842,315,0 chrIX 314131 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.00;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1155,132,0 chrIX 314242 . C T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.370;QD=19.48;ReadPosRankSum=-0.019;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1786,207,0 chrIX 314335 . A T 2210 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2243,249,0 chrIX 314742 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.66;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1934,216,0 chrIX 315065 . G A 702 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=13.25;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:735,81,0 chrIX 315075 . C G 463 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=10.77;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:57:496,57,0 chrIX 315079 . A G 412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-0.037;QD=8.58;ReadPosRankSum=1.659;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:51:445,51,0 chrIX 315217 . T A 1666 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.14;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1699,189,0 chrIX 315261 . C G 1718 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.86;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1751,198,0 chrIX 315368 . T C 1496 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.67;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1529,174,0 chrIX 315641 . T C 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;DP=76;Dels=0.00;FS=6.007;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.554;QD=18.28;ReadPosRankSum=2.798;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:3,72:76:99:1422,124,0 chrIX 315783 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.27;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1112,120,0 chrIX 315806 . T C 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;DP=61;Dels=0.00;FS=2.643;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.339;QD=19.66;ReadPosRankSum=2.883;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:3,57:61:99:1232,141,0 chrIX 316019 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.30;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1403,159,0 chrIX 316046 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.32;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1231,138,0 chrIX 316163 . A G 747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.133;QD=19.15;ReadPosRankSum=1.644;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:90:780,90,0 chrIX 316167 . C T 718 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.12;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:751,84,0 chrIX 316207 . C T 897 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.02;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:930,108,0 chrIX 316233 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-0.379;QD=14.03;ReadPosRankSum=1.678;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:945,105,0 chrIX 316244 . A T 1218 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=15.42;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1251,135,0 chrIX 316294 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=12.88;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1089,123,0 chrIX 316301 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=-1.607;QD=13.89;ReadPosRankSum=0.702;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1130,126,0 chrIX 316311 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=13.58;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1106,123,0 chrIX 316329 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=12.61;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:979,108,0 chrIX 316388 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=13.80;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:78:723,78,0 chrIX 316440 . T C 282 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=7.42;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:36:315,36,0 chrIX 316441 . C T 348 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=8.92;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:381,42,0 chrIX 316450 . C T 390 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=8.86;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:48:423,48,0 chrIX 316645 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=19.58;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1560,177,0 chrIX 316715 . A T 2737 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=24.01;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2770,303,0 chrIX 316929 . G C 1006 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.35;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1039,117,0 chrIX 316998 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1539,171,0 chrIX 317145 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.21;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1475,159,0 chrIX 317443 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=2;QD=19.91;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1785,204,0 chrIX 318129 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.79;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:81:752,81,0 chrIX 318187 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1480,162,0 chrIX 318288 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=26.06;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1310,141,0 chrIX 318344 . A C 1942 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.27;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1975,225,0 chrIX 318368 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.16;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1747,201,0 chrIX 318395 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.07;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1357,150,0 chrIX 318650 . G A 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.078;QD=18.57;ReadPosRankSum=1.155;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1704,189,0 chrIX 318694 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7160;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=15.60;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1437,159,0 chrIX 319209 . T C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=97;Dels=0.00;FS=5.607;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.000;QD=19.38;ReadPosRankSum=2.906;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:3,93:97:99:1913,216,0 chrIX 319556 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.84;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,99:103:99:1974,225,0 chrIX 319584 . G T 1993 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.90;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2026,219,0 chrIX 319721 . T A 1571 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.64;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1604,180,0 chrIX 320609 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.81;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1494,168,0 chrIX 321421 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.78;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1924,216,0 chrIX 321685 . T G 1752 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.63;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1785,201,0 chrIX 321763 . A G 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=2.632;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.238;QD=16.93;ReadPosRankSum=2.366;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1523,174,0 chrIX 322066 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.99;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1346,153,0 chrIX 322192 . T A 1276 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.49;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1309,144,0 chrIX 322202 . T C 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.216;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.453;QD=17.82;ReadPosRankSum=1.679;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1191,135,0 chrIX 322207 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=15.24;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1191,129,0 chrIX 322620 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.04;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1994,228,0 chrIX 323343 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9446;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.99;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1859,210,0 chrIX 323883 . A G 1680 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.00;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1713,198,0 chrIX 324029 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.68;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1465,159,0 chrIX 324390 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=15.34;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:892,99,0 chrIX 324408 . C G 757 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=14.84;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:790,90,0 chrIX 324424 . C A 839 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=15.54;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:872,93,0 chrIX 324521 . A C 982 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=15.84;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1015,111,0 chrIX 324536 . G A 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;MQRankSum=1.397;QD=15.33;ReadPosRankSum=-1.062;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1014,114,0 chrIX 324559 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=15.68;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:911,105,0 chrIX 324573 . T C 793 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=14.69;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:93:826,93,0 chrIX 324597 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.74;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1176,126,0 chrIX 324627 . G T 1861 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.45;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1894,213,0 chrIX 324913 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.19;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2072,234,0 chrIX 325047 . C T 2254 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=17.8351;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.48;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2287,246,0 chrIX 325112 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.51;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1699,195,0 chrIX 325145 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.42;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1789,198,0 chrIX 325265 . A C 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.370;QD=21.84;ReadPosRankSum=1.681;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1496,171,0 chrIX 325450 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.43;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1618,183,0 chrIX 325723 . T A 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.693;QD=23.18;ReadPosRankSum=1.663;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1215,129,0 chrIX 326195 . C G 1687 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.35;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1720,201,0 chrIX 326249 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.37;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2091,240,0 chrIX 326540 . A G 2059 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2092,237,0 chrIX 326669 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.19;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1772,192,0 chrIX 327320 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.89;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1429,156,0 chrIX 328693 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1475,162,0 chrIX 329599 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.99;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1438,159,0 chrIX 331018 . C G 1268 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.45;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1301,153,0 chrIX 331642 . G A 2075 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.07;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2108,231,0 chrIX 332459 . C T 941 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.02;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:974,105,0 chrIX 332920 . C G 1468 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1501,168,0 chrIX 332970 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.31;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1699,192,0 chrIX 333073 . A C 1782 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=88.8183;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.47;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,98:102:99:1815,207,0 chrIX 333345 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.62;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1030,117,0 chrIX 333801 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1959,216,0 chrIX 334096 . A T 1857 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.0454;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.76;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1890,207,0 chrIX 334281 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=16.04;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1509,174,0 chrIX 334696 . T C 1853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.855;QD=24.71;ReadPosRankSum=1.686;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1886,213,0 chrIX 334734 . C A 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.64;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1292,138,0 chrIX 334815 . T C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.336;DP=76;Dels=0.01;FS=5.355;HaplotypeScore=10.8576;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.318;QD=21.33;ReadPosRankSum=3.242;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1654,186,0 chrIX 334919 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.675;QD=21.44;ReadPosRankSum=2.370;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:2048,231,0 chrIX 335022 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=7.452;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.936;QD=19.73;ReadPosRankSum=2.347;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1927,216,0 chrIX 335035 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.99;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2008,222,0 chrIX 335555 . T A 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.525;QD=21.06;ReadPosRankSum=1.594;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1086,120,0 chrIX 335733 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.54;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1822,201,0 chrIX 335817 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.06;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1236,138,0 chrIX 335838 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.15;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1207,132,0 chrIX 335992 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2496;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.37;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1428,159,0 chrIX 336156 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.069;QD=18.82;ReadPosRankSum=1.663;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:974,111,0 chrIX 336223 . T C 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.314;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.476;QD=20.80;ReadPosRankSum=1.668;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1156,129,0 chrIX 336490 . G T 1560 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.61;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1593,183,0 chrIX 336672 . A G 677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=33.4132;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.945;QD=15.39;ReadPosRankSum=-1.024;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:81:710,81,0 chrIX 336673 . A G 681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=3.112;HaplotypeScore=33.4132;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-0.443;QD=15.48;ReadPosRankSum=1.652;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:81:714,81,0 chrIX 336731 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.208;QD=20.38;ReadPosRankSum=1.692;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1786,201,0 chrIX 336795 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.598;QD=19.07;ReadPosRankSum=1.698;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1997,231,0 chrIX 336869 . A G 2353 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.84;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2386,270,0 chrIX 337083 . A T 1577 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.75;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1610,177,0 chrIX 337127 . C G 1558 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.26;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1591,180,0 chrIX 337182 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.18;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1311,150,0 chrIX 337219 . T G 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.813;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;MQRankSum=-0.022;QD=16.47;ReadPosRankSum=1.687;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1301,147,0 chrIX 337321 . C A 1678 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.7698;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=15.39;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1711,195,0 chrIX 337390 . G A 2581 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.68;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2614,288,0 chrIX 337478 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.30;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1434,162,0 chrIX 337519 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.81;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1157,126,0 chrIX 337589 . C A 1457 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.75;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1490,162,0 chrIX 337621 . C T 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.650;QD=20.37;ReadPosRankSum=1.570;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1357,147,0 chrIX 337721 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.1528;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.723;QD=18.18;ReadPosRankSum=1.705;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2360,267,0 chrIX 337799 . C G 1333 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.09;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1366,153,0 chrIX 337905 . T A 1043 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.68;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1076,117,0 chrIX 337948 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=17.86;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:926,105,0 chrIX 337953 . A G 840 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=17.50;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:873,99,0 chrIX 337964 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.15;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1013,111,0 chrIX 338462 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.52;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1311,150,0 chrIX 340156 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.36;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1540,171,0 chrIX 340234 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.53;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1593,174,0 chrIX 340927 . A C 1360 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.00;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1393,156,0 chrIX 341514 . T G 691 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.36;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:81:724,81,0 chrIX 341515 . G C 698 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=15.86;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:81:731,81,0 chrIX 341595 . C A 1300 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.31;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1333,147,0 chrIX 341662 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.24;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1560,171,0 chrIX 341742 . G T 1460 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.17;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1493,168,0 chrIX 341786 . T G 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.669;QD=23.65;ReadPosRankSum=1.669;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1334,150,0 chrIX 341828 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.64;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1168,132,0 chrIX 341987 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1762;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.88;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2549,279,0 chrIX 342093 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.86;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1171,123,0 chrIX 342151 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.28;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1441,153,0 chrIX 342194 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.93;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1249,141,0 chrIX 342264 . T G 1811 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.56;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1844,213,0 chrIX 342922 . G T 2051 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.91;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2084,234,0 chrIX 342976 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.48;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2117,237,0 chrIX 343172 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.10;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1608,180,0 chrIX 343174 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.17;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1510,171,0 chrIX 343874 . T C 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.107;QD=20.63;ReadPosRankSum=1.689;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1704,192,0 chrIX 344094 . C T 2331 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.81;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2364,261,0 chrIX 344292 . T G 1972 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.12;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2005,234,0 chrIX 344337 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.46;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,261,0 chrIX 344547 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=16.00;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1489,165,0 chrIX 344556 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.58;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1509,165,0 chrIX 344691 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.7095;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.73;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1986,213,0 chrIX 344740 . C A 1594 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3514;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=15.78;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1627,177,0 chrIX 344746 . T C 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3042;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-1.111;QD=13.99;ReadPosRankSum=2.306;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:1488,171,0 chrIX 345129 . G C 1389 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.36;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1422,159,0 chrIX 345192 . A C 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.0174;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.97;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1437,162,0 chrIX 345247 . A C 1479 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.96;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1512,174,0 chrIX 345656 . A C 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.280;QD=18.88;ReadPosRankSum=1.694;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1770,201,0 chrIX 345745 . T C 1336 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.82;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1369,156,0 chrIX 345871 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.061;QD=23.05;ReadPosRankSum=1.691;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1992,222,0 chrIX 345992 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.96;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1650,192,0 chrIX 346155 . A T 1088 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.76;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1121,126,0 chrIX 346529 . A G 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.380;QD=19.48;ReadPosRankSum=1.648;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:96:851,96,0 chrIX 346766 . A C 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=44;Dels=0.00;FS=3.212;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=15.98;ReadPosRankSum=1.654;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:84:736,84,0 chrIX 346870 . T A 806 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.52;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:839,96,0 chrIX 346999 . C G 1186 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.81;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1219,141,0 chrIX 347117 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.1313;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.67;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1335,150,0 chrIX 347270 . A T 669 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.30;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:75:702,75,0 chrIX 347287 . T C 802 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.91;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:835,93,0 chrIX 347520 . G C 1846 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.97;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1879,213,0 chrIX 347702 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0526;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.84;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1656,186,0 chrIX 347706 . A T 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=4.0669;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.905;QD=19.99;ReadPosRankSum=1.653;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1812,198,0 chrIX 347916 . A G 2071 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.11;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2104,240,0 chrIX 348431 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.51;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1588,177,0 chrIX 348682 . T G 1521 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=16.35;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1554,177,0 chrIX 348717 . T C 1033 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=95;Dels=0.00;FS=3.250;HaplotypeScore=5.1454;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;MQRankSum=-0.764;QD=10.87;ReadPosRankSum=1.248;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1066,102,0 chrIX 348722 . T C 1067 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6133;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=11.60;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1100,123,0 chrIX 348726 . C T 1031 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2783;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=11.33;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1064,117,0 chrIX 348738 . C T 947 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3152;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=9.76;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:980,111,0 chrIX 348848 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.2427;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.66;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:2177,237,0 chrIX 348943 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7716;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.31;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1906,219,0 chrIX 348957 . A G 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=97;Dels=0.00;FS=11.803;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.649;QD=19.11;ReadPosRankSum=2.926;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:3,92:97:99:1887,210,0 chrIX 348958 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=1.327;QD=18.99;ReadPosRankSum=0.848;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1818,188,0 chrIX 349220 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.10;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1822,201,0 chrIX 349907 . C T 901 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.17;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:934,108,0 chrIX 349959 . G A 828 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.62;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:861,99,0 chrIX 349963 . T A 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.385;QD=15.72;ReadPosRankSum=1.540;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:882,99,0 chrIX 350005 . A G 675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-1.079;QD=12.74;ReadPosRankSum=1.667;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:81:708,81,0 chrIX 350021 . G A 479 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=9.98;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:57:512,57,0 chrIX 350028 . T C 561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=7.525;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;MQRankSum=-0.115;QD=10.39;ReadPosRankSum=2.359;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:66:594,66,0 chrIX 350044 . T C 650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.732;QD=12.50;ReadPosRankSum=1.666;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:78:683,78,0 chrIX 350094 . A T 780 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=14.72;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:813,93,0 chrIX 350135 . A G 699 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.42;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:732,84,0 chrIX 350146 . G T 739 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.95;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:772,84,0 chrIX 350183 . T A 625 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=14.53;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:658,75,0 chrIX 350189 . G C 538 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=15.37;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:571,66,0 chrIX 350262 . C A 559 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.63;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:592,66,0 chrIX 350470 . G A 430 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.33;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:51:463,51,0 chrIX 350513 . A G 364 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=13.48;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:397,45,0 chrIX 350729 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1175,132,0 chrIX 351040 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.06;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1551,171,0 chrIX 351041 . T A 1485 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.69;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1518,168,0 chrIX 351362 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.41;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1489,162,0 chrIX 351895 . A G 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=70;Dels=0.00;FS=9.824;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.015;QD=23.34;ReadPosRankSum=2.810;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:99:1667,189,0 chrIX 352325 . T C 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.529;QD=20.27;ReadPosRankSum=2.305;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:2,49:52:99:1087,120,0 chrIX 352499 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.39;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1287,144,0 chrIX 352871 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.86;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2662,300,0 chrIX 353168 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.41;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2850,327,0 chrIX 353530 . T C 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=90;Dels=0.00;FS=6.578;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.343;QD=20.00;ReadPosRankSum=2.394;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1833,207,0 chrIX 353580 . G T 2190 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.47;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2223,240,0 chrIX 354377 . A C 1361 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.72;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1394,156,0 chrIX 354380 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.86;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1334,153,0 chrIX 354832 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1496,162,0 chrIX 354945 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1431,162,0 chrIX 355578 . T G 1039 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1072,120,0 chrIX 355622 . C T 74.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=6.77;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:107,12,0 chrIX 355640 . A C 78.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.731;QD=15.70;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:12:111,12,0 chrIX 355698 . T C 49.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=8.33;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:82,9,0 chrIX 355716 . A T 82.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=11.79;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:115,12,0 chrIX 355746 . T C 125.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.90;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:158,18,0 chrIX 355747 . A G 97.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=10.81;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:130,15,0 chrIX 355840 . G T 158.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:21:191,21,0 chrIX 356037 . C T 730 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.55;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:763,81,0 chrIX 356686 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.52;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2099,240,0 chrIX 356958 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.43;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1726,189,0 chrIX 357174 . G A 622 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.28;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:655,72,0 chrIX 357197 . G T 521 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.28;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:63:554,63,0 chrIX 357298 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2094,228,0 chrIX 357541 . T A 1151 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.84;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1184,135,0 chrIX 357741 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.62;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1277,144,0 chrIX 357800 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.61;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1496,162,0 chrIX 357955 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.58;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1482,168,0 chrIX 358029 . C A 1290 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.5263;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.70;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1323,144,0 chrIX 358060 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.43;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1194,135,0 chrIX 358276 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=21.59;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1566,177,0 chrIX 358420 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=17.77;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1099,126,0 chrIX 358450 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.02;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1314,150,0 chrIX 358570 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.03;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1337,150,0 chrIX 358980 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.33;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1078,123,0 chrIX 359077 . G T 1284 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.40;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1317,144,0 chrIX 359356 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.40;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:964,111,0 chrIX 359494 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1102,126,0 chrIX 359599 . A G 2121 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2154,252,0 chrIX 359743 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.07;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1551,180,0 chrIX 359744 . G T 1574 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.52;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1607,177,0 chrIX 360413 . C A 1895 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.78;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1928,207,0 chrIX 360668 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.51;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1206,138,0 chrIX 360669 . A C 1212 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.82;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1245,138,0 chrIX 360722 . T G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8725;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.131;QD=17.60;ReadPosRankSum=1.697;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1793,201,0 chrIX 360810 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.655;DP=115;Dels=0.00;FS=8.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=0.391;QD=15.31;ReadPosRankSum=3.710;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:5,110:115:99:1794,198,0 chrIX 360811 . T C 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=0.234;QD=15.03;ReadPosRankSum=1.701;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,110:115:99:1762,195,0 chrIX 360876 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.11;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1898,210,0 chrIX 360902 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.15;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1982,219,0 chrIX 360955 . T C 1421 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.22;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1454,168,0 chrIX 360959 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.25;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1402,156,0 chrIX 361222 . A G 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=138;Dels=0.00;FS=15.326;HaplotypeScore=19.1620;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.717;QD=18.86;ReadPosRankSum=3.395;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:4,134:138:99:2635,294,0 chrIX 361254 . G C 1983 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.07;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2016,228,0 chrIX 361267 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.06;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1882,216,0 chrIX 361353 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=16.44;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1578,171,0 chrIX 361360 . C A 1425 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=16.19;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1458,162,0 chrIX 361396 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-1.273;QD=17.23;ReadPosRankSum=1.690;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1463,146,0 chrIX 361489 . C A 1779 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.34;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1812,198,0 chrIX 361497 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.910;DP=91;Dels=0.00;FS=14.844;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.568;QD=15.41;ReadPosRankSum=4.022;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:6,85:91:99:1435,165,0 chrIX 361543 . A C 1475 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=16.76;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1508,174,0 chrIX 361688 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.89;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1828,201,0 chrIX 361957 . G T 1433 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.86;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1466,168,0 chrIX 362340 . C A 963 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.65;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:996,108,0 chrIX 362381 . A C 1416 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.23;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1449,165,0 chrIX 362523 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.33;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2489,270,0 chrIX 362531 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.719;DP=113;Dels=0.00;FS=23.094;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.310;QD=19.92;ReadPosRankSum=3.621;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:5,108:113:99:2284,261,0 chrIX 362658 . A C 974 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1007,114,0 chrIX 363250 . G A 667 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:81:700,81,0 chrIX 363644 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.261;QD=19.84;ReadPosRankSum=1.665;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2096,240,0 chrIX 363854 . T C 3759.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.1917;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.38;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3759,423,0 chrIX 364352 . C T 1083 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1116,123,0 chrIX 364426 . T C 1114 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.63;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1147,132,0 chrIX 365053 . A T 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=6.435;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=23.85;ReadPosRankSum=1.680;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1607,174,0 chrIX 365116 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.12;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1339,150,0 chrIX 365934 . A C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=119;Dels=0.00;FS=3.961;HaplotypeScore=7.5087;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.051;QD=20.68;ReadPosRankSum=1.703;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2494,285,0 chrIX 366193 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.01;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1987,228,0 chrIX 366477 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.99;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2426,279,0 chrIX 366585 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.67;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1280,138,0 chrIX 366597 . A T 522.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;DP=48;Dels=0.00;FS=8.602;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.41;MQ0=0;MQRankSum=-0.351;QD=10.88;ReadPosRankSum=-2.311;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:18,30:48:99:552,0,259 chrIX 366602 . G A 432.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;DP=44;Dels=0.00;FS=24.924;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=0.223;QD=9.82;ReadPosRankSum=-3.251;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:22,22:44:99:462,0,348 chrIX 366603 . C T 426.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DP=44;Dels=0.00;FS=24.924;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=1.444;QD=9.68;ReadPosRankSum=-3.533;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:22,22:44:99:456,0,343 chrIX 367155 . A G 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.577;QD=21.86;ReadPosRankSum=1.653;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1935,225,0 chrIX 367284 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1516,171,0 chrIX 367690 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1487,168,0 chrIX 367896 . C T 932 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:965,105,0 chrIX 367929 . T A 766 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:799,87,0 chrIX 368031 . C T 680 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.38;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:75:713,75,0 chrIX 368158 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.77;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:962,111,0 chrIX 368159 . T C 907 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.16;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:940,108,0 chrIX 368784 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.7491;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.25;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2321,255,0 chrIX 369078 . T C 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.831;QD=18.97;ReadPosRankSum=1.663;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1930,219,0 chrIX 369195 . G A 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=122;Dels=0.00;FS=3.197;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.917;QD=17.66;ReadPosRankSum=1.354;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2187,258,0 chrIX 369452 . C A 1668 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.59;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1701,189,0 chrIX 369589 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1530;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.94;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2097,231,0 chrIX 369603 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.82;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2174,234,0 chrIX 370024 . A G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.352;QD=21.04;ReadPosRankSum=1.648;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1758,195,0 chrIX 370118 . A T 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6584;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.098;QD=17.47;ReadPosRankSum=1.635;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1291,141,0 chrIX 370388 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1387,147,0 chrIX 370829 . C G 1436 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.76;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1469,168,0 chrIX 371225 . C A 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.325;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.162;QD=19.34;ReadPosRankSum=-1.137;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1290,141,0 chrIX 371441 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.67;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1542,174,0 chrIX 371572 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.34;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1591,177,0 chrIX 371627 . T C 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=3.072;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.512;QD=21.03;ReadPosRankSum=1.683;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1547,174,0 chrIX 371714 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.94;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2235,240,0 chrIX 371735 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.15;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1725,186,0 chrIX 371942 . A T 1801 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.01;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1834,204,0 chrIX 371957 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.78;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1761,195,0 chrIX 372035 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.45;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1835,204,0 chrIX 372078 . C A 1665 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.20;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1698,186,0 chrIX 372095 . C G 1530 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.25;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1563,180,0 chrIX 372149 . C A 1837 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.55;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1870,207,0 chrIX 372398 . T C 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=2.881;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.282;QD=19.92;ReadPosRankSum=2.361;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1706,195,0 chrIX 372464 . T C 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=4.4418;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.543;QD=18.67;ReadPosRankSum=1.112;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1284,144,0 chrIX 372678 . C A 1593 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.82;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1626,174,0 chrIX 372809 . T C 286 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=9.86;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:39:319,39,0 chrIX 373063 . A G 783 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:90:816,90,0 chrIX 373876 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.80;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1593,174,0 chrIX 373971 . A G 1590 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8367;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.28;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1623,186,0 chrIX 374268 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1612,186,0 chrIX 374496 . C G 2292 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.69;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2325,267,0 chrIX 374698 . A C 1243 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.01;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1276,147,0 chrIX 374861 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.19;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2319,258,0 chrIX 375017 . G A 977 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.79;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1010,114,0 chrIX 375107 . T C 829 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.42;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:862,99,0 chrIX 375219 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.41;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1450,162,0 chrIX 375220 . G C 1402 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.95;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1435,162,0 chrIX 375279 . C A 1393 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.82;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1426,162,0 chrIX 375574 . C G 1179 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.86;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1212,144,0 chrIX 375595 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=15.37;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1155,126,0 chrIX 375601 . A G 952 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=13.41;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:985,111,0 chrIX 375694 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0455;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1378,159,0 chrIX 375832 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.33;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2065,228,0 chrIX 375934 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.370;QD=18.74;ReadPosRankSum=1.692;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1645,189,0 chrIX 376391 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.59;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1717,192,0 chrIX 376411 . A G 1529 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.60;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1562,177,0 chrIX 376429 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.981;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.509;QD=19.04;ReadPosRankSum=1.691;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1651,192,0 chrIX 376567 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.86;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1618,186,0 chrIX 376703 . C A 1504 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.60;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1537,165,0 chrIX 376864 . T A 1418 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.42;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1451,162,0 chrIX 377556 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.57;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1679,189,0 chrIX 377587 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=17.55;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1490,168,0 chrIX 378204 . T C 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.443;QD=19.20;ReadPosRankSum=1.691;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1646,186,0 chrIX 378238 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2028,228,0 chrIX 379276 . A C 1596 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.46;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1629,186,0 chrIX 379439 . T G 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.29;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2098,243,0 chrIX 379472 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.13;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2104,228,0 chrIX 379840 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.74;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1931,228,0 chrIX 379942 . A C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.5200;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.681;QD=21.32;ReadPosRankSum=1.477;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1483,168,0 chrIX 379996 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1165,132,0 chrIX 380031 . A T 967 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1000,114,0 chrIX 380325 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.02;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1139,129,0 chrIX 380389 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.63;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1323,147,0 chrIX 380666 . A G 772 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.86;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:805,93,0 chrIX 380756 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.45;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:850,93,0 chrIX 380768 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.07;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:916,102,0 chrIX 380999 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.33;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1328,150,0 chrIX 381084 . A C 973 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.27;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1006,114,0 chrIX 381106 . C A 982 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.64;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1015,108,0 chrIX 381277 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.13;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1066,120,0 chrIX 381280 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.724;QD=17.25;ReadPosRankSum=1.417;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:982,111,0 chrIX 381391 . C G 1516 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.44;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:78:99:1549,174,0 chrIX 381445 . A C 2082 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3365;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.46;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2115,240,0 chrIX 381521 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=17.99;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1328,150,0 chrIX 381525 . C G 1237 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=17.93;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1270,141,0 chrIX 381696 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.66;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1415,162,0 chrIX 382331 . T C 1098 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=18.30;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1131,126,0 chrIX 382343 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=15.45;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:991,111,0 chrIX 382352 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=13.43;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:839,93,0 chrIX 382389 . T G 521 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=10.42;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:554,63,0 chrIX 382390 . G A 534 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=10.68;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:567,63,0 chrIX 382403 . A G 531 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=10.84;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:564,63,0 chrIX 382528 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.51;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1457,165,0 chrIX 382690 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8735;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=21.00;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1440,165,0 chrIX 382792 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=77;Dels=0.00;FS=5.278;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.118;QD=20.74;ReadPosRankSum=2.909;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1630,186,0 chrIX 383027 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.18;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2239,243,0 chrIX 383041 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.81;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2232,237,0 chrIX 383061 . G T 1806 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.21;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1839,198,0 chrIX 383079 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.36;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1630,174,0 chrIX 383530 . G A 1337 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1370,147,0 chrIX 383892 . G C 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;DP=54;Dels=0.00;FS=56.203;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=56.49;MQ0=0;MQRankSum=0.992;QD=0.63;ReadPosRankSum=-4.089;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:44,10:54:64:64,0,495 chrIX 384118 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2908;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=16.26;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1757,201,0 chrIX 384159 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.33;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1628,177,0 chrIX 384189 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.947;QD=20.86;ReadPosRankSum=1.686;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1639,186,0 chrIX 384418 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.31;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1385,156,0 chrIX 384629 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.18;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1871,210,0 chrIX 385125 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.45;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1178,129,0 chrIX 385360 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.58;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:789,84,0 chrIX 385499 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.78;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:745,81,0 chrIX 385546 . C T 508 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=16.39;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:541,60,0 chrIX 385590 . C G 400 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=14.29;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:433,51,0 chrIX 385599 . T C 348 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=13.38;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:45:381,45,0 chrIX 385600 . T C 358 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=13.77;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:45:391,45,0 chrIX 385607 . A G 325 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=13.00;SB=-6.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:358,42,0 chrIX 385714 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.57;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:771,84,0 chrIX 385724 . G A 690 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.33;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:723,87,0 chrIX 385866 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=22.74;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1079,117,0 chrIX 385872 . T C 885 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=19.67;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:918,105,0 chrIX 385886 . G A 878 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=19.95;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:911,99,0 chrIX 385951 . C T 172.03 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=5.73;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:24:205,24,0 chrIX 385961 . A G 169.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=5.28;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:202,24,0 chrIX 386051 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.07;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1556,177,0 chrIX 386125 . A T 1379 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.24;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1412,153,0 chrIX 386244 . A G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;MQRankSum=-1.099;QD=17.30;ReadPosRankSum=2.338;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:90:794,90,0 chrIX 386266 . C T 727 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;QD=18.17;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:760,84,0 chrIX 386289 . A G 798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.472;QD=18.14;ReadPosRankSum=1.654;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:96:831,96,0 chrIX 386321 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=17.24;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:964,105,0 chrIX 386334 . A T 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=55;Dels=0.00;FS=12.314;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=1.056;QD=15.33;ReadPosRankSum=2.872;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:93:876,93,0 chrIX 386360 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=13.90;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:964,102,0 chrIX 386386 . T C 883 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=13.18;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:916,105,0 chrIX 386399 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=13.97;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:955,105,0 chrIX 386447 . T G 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=6.438;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.618;QD=19.02;ReadPosRankSum=2.359;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1060,117,0 chrIX 386492 . G C 627 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=13.63;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:660,75,0 chrIX 386511 . C T 413 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=42.6903;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=7.79;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:51:446,51,0 chrIX 386548 . G A 222 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.41;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:30:255,30,0 chrIX 386561 . G C 249 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=5.08;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:33:282,33,0 chrIX 386566 . G A 196.03 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=4.26;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:24:229,24,0 chrIX 386589 . A G 240 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=4.71;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:30:273,30,0 chrIX 386592 . G A 259 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=5.18;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:33:292,33,0 chrIX 386665 . G T 920 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.69;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:953,105,0 chrIX 387056 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.87;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:993,108,0 chrIX 387082 . T G 866 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.62;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:899,102,0 chrIX 387176 . G A 460 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=10.0245;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=9.79;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:54:493,54,0 chrIX 388079 . T C 609 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:75:642,75,0 chrIX 388145 . G A 330 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.33;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:363,39,0 chrIX 388158 . C A 454 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.64;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:487,54,0 chrIX 388220 . A G 391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.722;QD=15.04;ReadPosRankSum=1.589;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:1,24:26:48:424,48,0 chrIX 388256 . G A 436 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.82;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:51:469,51,0 chrIX 388426 . A G 1329 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.61;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1362,153,0 chrIX 388455 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.85;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1273,141,0 chrIX 388520 . A C 948 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.05;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:981,111,0 chrIX 388703 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.92;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1769,195,0 chrIX 388717 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.30;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1654,177,0 chrIX 388897 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.31;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1333,150,0 chrIX 389030 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0096;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.69;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1490,168,0 chrIX 389156 . C T 706 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.17;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:81:739,81,0 chrIX 389168 . T A 630 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.32;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:663,72,0 chrIX 389212 . T C 581 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.37;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:614,69,0 chrIX 389295 . C T 831 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=1;QD=15.39;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:864,96,0 chrIX 389318 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=1;QD=16.02;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:898,102,0 chrIX 389512 . T A 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=57;Dels=0.00;FS=11.491;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.316;QD=17.63;ReadPosRankSum=3.448;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:5,52:57:99:1038,111,0 chrIX 389745 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=16.31;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:979,111,0 chrIX 389949 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=17.22;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2082,234,0 chrIX 389968 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=14.46;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1566,171,0 chrIX 390207 . T C 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=3.340;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.380;QD=18.05;ReadPosRankSum=1.648;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1531,177,0 chrIX 390275 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.275;QD=19.09;ReadPosRankSum=1.699;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2076,234,0 chrIX 390679 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.89;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2168,237,0 chrIX 390718 . T C 2134 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.72;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2167,249,0 chrIX 390814 . A T 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;DP=82;Dels=0.00;FS=11.377;HaplotypeScore=6.5151;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=1;MQRankSum=2.912;QD=18.83;ReadPosRankSum=-0.431;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:99:1577,177,0 chrIX 390899 . T G 1825 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.62;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1858,213,0 chrIX 390981 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=2.28;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:10:6:54,6,0 chrIX 391102 . G A 597.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;DP=110;Dels=0.00;FS=18.074;HaplotypeScore=1.8600;MLEAC=1;MLEAF=0.500;MQ=36.01;MQ0=0;MQRankSum=-1.312;QD=5.43;ReadPosRankSum=-1.197;SB=-3.330e+02 GT:AD:DP:GQ:PL 0/1:64,46:110:99:627,0,844 chrIX 391105 . G A 589.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DP=108;Dels=0.00;FS=18.473;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=0;MQRankSum=-1.989;QD=5.45;ReadPosRankSum=-2.212;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:61,47:108:99:619,0,847 chrIX 391121 . G A 811.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;DP=101;Dels=0.00;FS=12.339;HaplotypeScore=10.6812;MLEAC=1;MLEAF=0.500;MQ=36.62;MQ0=0;MQRankSum=1.688;QD=8.03;ReadPosRankSum=0.757;SB=-1.860e+02 GT:AD:DP:GQ:PL 0/1:44,57:101:99:841,0,617 chrIX 391126 . A G 385.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;DP=106;Dels=0.00;FS=17.760;HaplotypeScore=12.9692;MLEAC=1;MLEAF=0.500;MQ=35.67;MQ0=0;MQRankSum=-0.234;QD=3.63;ReadPosRankSum=1.967;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:68,38:106:99:415,0,741 chrIX 391138 . A G 469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;DP=79;Dels=0.00;FS=9.455;HaplotypeScore=43.9276;MLEAC=1;MLEAF=0.500;MQ=31.14;MQ0=0;MQRankSum=-1.999;QD=5.94;ReadPosRankSum=-1.510;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:29,50:79:99:499,0,313 chrIX 391139 . G C 400.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;DP=76;Dels=0.00;FS=5.375;HaplotypeScore=43.9276;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=-0.356;QD=5.26;ReadPosRankSum=-0.849;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:43,33:76:99:430,0,351 chrIX 391147 . T G 257.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;DP=61;Dels=0.00;FS=5.317;HaplotypeScore=222.2207;MLEAC=1;MLEAF=0.500;MQ=34.99;MQ0=0;MQRankSum=0.008;QD=4.21;ReadPosRankSum=-2.671;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:19,42:61:99:287,0,158 chrIX 391148 . G A 232.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=232.9221;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=0;MQRankSum=-0.736;QD=3.80;ReadPosRankSum=-3.150;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:40,21:61:99:262,0,182 chrIX 391159 . T A 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=206.4768;MLEAC=1;MLEAF=0.500;MQ=38.73;MQ0=0;MQRankSum=-1.087;QD=2.18;ReadPosRankSum=0.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,11:44:94:126,0,94 chrIX 391160 . A G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;DP=44;Dels=0.00;FS=2.235;HaplotypeScore=206.4768;MLEAC=1;MLEAF=0.500;MQ=38.73;MQ0=0;MQRankSum=-1.662;QD=2.05;ReadPosRankSum=-0.191;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,11:44:99:120,0,151 chrIX 391166 . A G 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.078;DP=44;Dels=0.00;FS=3.969;HaplotypeScore=65.3122;MLEAC=1;MLEAF=0.500;MQ=37.45;MQ0=0;MQRankSum=-2.463;QD=1.16;ReadPosRankSum=-1.461;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,11:44:81:81,0,277 chrIX 391198 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=1;QD=14.52;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:875,99,0 chrIX 391301 . G A 37.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=17;Dels=0.00;FS=6.560;HaplotypeScore=2.8188;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=3;MQRankSum=-1.067;QD=2.18;ReadPosRankSum=0.400;SB=-2.044e-02 GT:AD:DP:GQ:PL 0/1:11,6:17:15:67,0,15 chrIX 391315 . G A 30.10 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;DP=17;Dels=0.00;FS=11.553;HaplotypeScore=3.8104;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=3;MQRankSum=-0.780;QD=1.77;ReadPosRankSum=0.780;SB=-2.586e+00 GT:AD:DP:GQ:PL 0/1:7,10:17:14:60,0,14 chrIX 391318 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;DP=19;Dels=0.00;FS=9.961;HaplotypeScore=7.5990;MLEAC=1;MLEAF=0.500;MQ=19.86;MQ0=4;MQRankSum=-1.286;QD=1.37;ReadPosRankSum=2.266;SB=0.061 GT:AD:DP:GQ:PL 0/1:13,6:19:37:56,0,37 chrIX 391351 . A G 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DP=38;Dels=0.00;FS=28.968;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=5;MQRankSum=4.449;QD=3.24;ReadPosRankSum=-0.919;SB=-1.197e+01 GT:AD:DP:GQ:PL 0/1:21,17:38:64:153,0,64 chrIX 391363 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;DP=41;Dels=0.00;FS=2.995;HaplotypeScore=12.5572;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=5;MQRankSum=0.539;QD=0.32;ReadPosRankSum=-1.299;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,18:41:43:43,0,199 chrIX 391372 . G T 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=11.7686;MLEAC=1;MLEAF=0.500;MQ=22.41;MQ0=4;MQRankSum=0.789;QD=2.44;ReadPosRankSum=1.624;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:26,15:41:99:130,0,113 chrIX 391384 . T A 128.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DP=48;Dels=0.00;FS=1.145;HaplotypeScore=19.4692;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=1;MQRankSum=0.927;QD=2.67;ReadPosRankSum=1.013;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:23,25:48:93:158,0,93 chrIX 391385 . A G 141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DP=48;Dels=0.00;FS=1.145;HaplotypeScore=24.3366;MLEAC=1;MLEAF=0.500;MQ=22.94;MQ0=1;MQRankSum=0.672;QD=2.94;ReadPosRankSum=1.077;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:23,25:48:99:171,0,99 chrIX 391405 . A G 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.677;DP=62;Dels=0.00;FS=1.077;HaplotypeScore=28.2587;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=2;MQRankSum=2.423;QD=1.27;ReadPosRankSum=1.153;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:42,20:62:99:109,0,218 chrIX 391408 . G A 354.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=66;Dels=0.00;FS=12.496;HaplotypeScore=23.3913;MLEAC=2;MLEAF=1.00;MQ=22.73;MQ0=2;MQRankSum=4.061;QD=5.36;ReadPosRankSum=0.400;SB=-1.173e+02 GT:AD:DP:GQ:PL 1/1:22,44:66:28:387,28,0 chrIX 391419 . T A 185.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=68;Dels=0.00;FS=6.858;HaplotypeScore=10.1270;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=2;MQRankSum=0.122;QD=2.72;ReadPosRankSum=-0.715;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:37,31:68:99:215,0,170 chrIX 391432 . A G 347.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;DP=74;Dels=0.00;FS=13.706;HaplotypeScore=6.2931;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=3;MQRankSum=2.509;QD=4.69;ReadPosRankSum=0.591;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:30,44:74:65:377,0,65 chrIX 391444 . A G 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;DP=86;Dels=0.00;FS=6.572;HaplotypeScore=48.2465;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=8;MQRankSum=0.887;QD=1.15;ReadPosRankSum=0.077;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:52,34:86:99:129,0,359 chrIX 391447 . A G 268.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=86;Dels=0.00;FS=16.749;HaplotypeScore=47.5883;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=9;MQRankSum=0.404;QD=3.12;ReadPosRankSum=1.179;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:59,27:86:99:298,0,200 chrIX 391453 . G T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;DP=90;Dels=0.00;FS=16.755;HaplotypeScore=52.9168;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=11;MQRankSum=-0.796;QD=0.39;ReadPosRankSum=0.276;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:61,28:90:65:65,0,431 chrIX 391465 . T A 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;DP=86;Dels=0.00;FS=2.114;HaplotypeScore=8.0701;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=13;MQRankSum=-1.077;QD=2.14;ReadPosRankSum=1.990;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:55,31:86:99:214,0,325 chrIX 391466 . A G 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;DP=84;Dels=0.00;FS=3.495;HaplotypeScore=8.0701;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=13;MQRankSum=-1.449;QD=2.25;ReadPosRankSum=1.542;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:52,32:84:99:219,0,309 chrIX 391489 . A G 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=52.4336;MLEAC=1;MLEAF=0.500;MQ=19.08;MQ0=25;MQRankSum=1.814;QD=2.10;ReadPosRankSum=3.448;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:58,32:90:99:219,0,302 chrIX 391492 . A G 262.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DP=90;Dels=0.00;FS=19.927;HaplotypeScore=59.4076;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=25;MQRankSum=0.432;QD=2.91;ReadPosRankSum=-0.283;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:61,29:90:99:292,0,284 chrIX 391498 . G T 360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DP=90;Dels=0.00;FS=2.377;HaplotypeScore=55.2588;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=26;MQRankSum=-1.221;QD=4.00;ReadPosRankSum=1.663;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:37,52:90:99:390,0,174 chrIX 391510 . T A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DP=87;Dels=0.00;FS=1.476;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=19.26;MQ0=28;MQRankSum=1.591;QD=0.37;ReadPosRankSum=-1.949;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:71,16:87:62:62,0,527 chrIX 391511 . A G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DP=87;Dels=0.00;FS=1.473;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=19.26;MQ0=28;MQRankSum=1.430;QD=0.46;ReadPosRankSum=-2.121;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:70,16:87:70:70,0,487 chrIX 391534 . A G 211.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=30.4995;MLEAC=1;MLEAF=0.500;MQ=18.38;MQ0=26;MQRankSum=-0.012;QD=3.01;ReadPosRankSum=2.157;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:33,37:70:99:241,0,125 chrIX 391537 . A G 90.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=66;Dels=0.00;FS=5.003;HaplotypeScore=31.2495;MLEAC=1;MLEAF=0.500;MQ=17.49;MQ0=26;MQRankSum=2.541;QD=1.36;ReadPosRankSum=1.386;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:49,17:66:99:120,0,244 chrIX 391543 . G T 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;DP=61;Dels=0.00;FS=7.569;HaplotypeScore=22.9227;MLEAC=1;MLEAF=0.500;MQ=17.80;MQ0=24;MQRankSum=-1.639;QD=1.72;ReadPosRankSum=0.178;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:36,24:61:99:135,0,227 chrIX 391555 . T A 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9371;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=20;MQRankSum=2.033;QD=1.32;ReadPosRankSum=1.582;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:32,15:47:92:92,0,179 chrIX 391556 . A G 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.9287;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=20;MQRankSum=1.406;QD=1.77;ReadPosRankSum=1.900;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:31,16:47:99:113,0,159 chrIX 391579 . G A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=34;Dels=0.00;FS=1.973;HaplotypeScore=7.3289;MLEAC=1;MLEAF=0.500;MQ=20.60;MQ0=10;MQRankSum=-0.433;QD=1.76;ReadPosRankSum=2.900;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:22,12:34:90:90,0,134 chrIX 391603 . A G 15.17 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=14.19;MQ0=8;MQRankSum=0.922;QD=1.01;ReadPosRankSum=0.922;SB=-1.903e+01 GT:AD:DP:GQ:PL 0/1:13,2:15:19:45,0,19 chrIX 391705 . G T 284.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=14;MQRankSum=0.249;QD=7.12;ReadPosRankSum=2.096;SB=-1.487e+02 GT:AD:DP:GQ:PL 0/1:8,32:40:3:314,0,3 chrIX 391724 . G A 176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;DP=32;Dels=0.00;FS=4.228;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=10;MQRankSum=1.194;QD=5.50;ReadPosRankSum=3.720;SB=-5.090e+01 GT:AD:DP:GQ:PL 0/1:13,19:32:47:206,0,47 chrIX 391741 . A G 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;DP=30;Dels=0.00;FS=1.971;HaplotypeScore=2.9142;MLEAC=1;MLEAF=0.500;MQ=23.98;MQ0=8;MQRankSum=1.290;QD=5.37;ReadPosRankSum=-1.806;SB=-9.490e+01 GT:AD:DP:GQ:PL 0/1:9,21:30:48:191,0,48 chrIX 391750 . G T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.415;DP=33;Dels=0.00;FS=8.098;HaplotypeScore=3.9097;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=10;MQRankSum=-1.085;QD=0.64;ReadPosRankSum=2.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,8:33:51:51,0,230 chrIX 391810 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;DP=24;Dels=0.00;FS=2.363;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.25;MQ0=9;MQRankSum=-0.710;QD=0.47;ReadPosRankSum=-0.968;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:16,8:24:41:41,0,106 chrIX 391825 . A G 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;DP=37;Dels=0.00;FS=29.014;HaplotypeScore=10.7872;MLEAC=1;MLEAF=0.500;MQ=18.98;MQ0=6;MQRankSum=-1.561;QD=4.97;ReadPosRankSum=-4.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,19:37:99:214,0,132 chrIX 391831 . T G 280.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=45;Dels=0.00;FS=42.445;HaplotypeScore=17.8833;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=6;MQRankSum=-0.748;QD=6.22;ReadPosRankSum=-1.652;SB=-1.293e+01 GT:AD:DP:GQ:PL 0/1:12,33:45:58:310,0,58 chrIX 391837 . G A 388 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=48;Dels=0.00;FS=14.002;HaplotypeScore=13.6899;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=5;MQRankSum=-0.078;QD=8.08;ReadPosRankSum=-0.505;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:8,39:48:39:421,39,0 chrIX 391855 . A G 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DP=63;Dels=0.00;FS=11.184;HaplotypeScore=9.3258;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=6;MQRankSum=-0.825;QD=3.14;ReadPosRankSum=4.574;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:37,26:63:99:228,0,238 chrIX 391870 . A G 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;DP=72;Dels=0.00;FS=13.106;HaplotypeScore=14.3970;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=7;MQRankSum=0.146;QD=2.04;ReadPosRankSum=-2.877;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:49,23:72:99:177,0,381 chrIX 391912 . A G 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DP=53;Dels=0.00;FS=9.099;HaplotypeScore=9.7980;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=4;MQRankSum=0.151;QD=4.66;ReadPosRankSum=3.668;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:24,29:53:82:277,0,82 chrIX 391933 . C T 145.06 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=4;QD=5.80;SB=-1.198e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:21:178,21,0 chrIX 391993 . A G 59.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.98;MQ0=4;QD=7.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:92,12,0 chrIX 392038 . G A 31.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=16.94;MQ0=7;MQRankSum=0.751;QD=1.95;ReadPosRankSum=0.751;SB=-2.181e+01 GT:AD:DP:GQ:PL 0/1:1,15:16:10:61,0,10 chrIX 392049 . T A 35.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;DP=19;Dels=0.00;FS=13.424;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.51;MQ0=7;MQRankSum=-1.109;QD=1.85;ReadPosRankSum=0.370;SB=0.316 GT:AD:DP:GQ:PL 0/1:9,10:19:10:65,0,10 chrIX 392062 . A G 63.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.370;DP=19;Dels=0.00;FS=13.424;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=17.51;MQ0=7;MQRankSum=-0.740;QD=3.34;ReadPosRankSum=1.109;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:9,10:19:12:96,12,0 chrIX 392074 . G A 34.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=20;Dels=0.00;FS=13.877;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=18.55;MQ0=6;MQRankSum=-0.212;QD=1.70;ReadPosRankSum=1.485;SB=-1.356e+01 GT:AD:DP:GQ:PL 0/1:10,10:20:14:64,0,14 chrIX 392077 . G A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DP=20;Dels=0.00;FS=10.510;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=18.69;MQ0=5;MQRankSum=0.530;QD=0.57;ReadPosRankSum=-2.298;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:9,11:20:38:41,0,38 chrIX 392089 . G A 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DP=26;Dels=0.00;FS=12.711;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=20.13;MQ0=4;MQRankSum=-0.037;QD=2.73;ReadPosRankSum=0.037;SB=-3.225e+01 GT:AD:DP:GQ:PL 0/1:8,18:26:34:101,0,34 chrIX 392119 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;DP=32;Dels=0.00;FS=5.620;HaplotypeScore=12.2874;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=3;MQRankSum=0.509;QD=0.35;ReadPosRankSum=0.066;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:18,14:32:41:41,0,157 chrIX 392128 . G T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=16.6606;MLEAC=1;MLEAF=0.500;MQ=20.84;MQ0=5;MQRankSum=0.711;QD=1.26;ReadPosRankSum=-1.078;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:20,14:34:73:73,0,138 chrIX 392140 . T A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DP=35;Dels=0.00;FS=1.862;HaplotypeScore=4.9579;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=6;MQRankSum=-0.673;QD=0.86;ReadPosRankSum=-0.458;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:28,7:35:60:60,0,162 chrIX 392141 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DP=35;Dels=0.00;FS=1.862;HaplotypeScore=5.9495;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=6;MQRankSum=-0.188;QD=0.86;ReadPosRankSum=-0.673;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:28,7:35:60:60,0,142 chrIX 392161 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.7648;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=7;MQRankSum=0.588;QD=0.49;ReadPosRankSum=-0.588;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:27,8:35:47:47,0,120 chrIX 392164 . G A 121.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;DP=32;Dels=0.00;FS=2.366;HaplotypeScore=2.7732;MLEAC=2;MLEAF=1.00;MQ=20.62;MQ0=6;MQRankSum=1.525;QD=3.80;ReadPosRankSum=2.087;SB=-1.815e+02 GT:AD:DP:GQ:PL 1/1:5,27:32:2:151,2,0 chrIX 392175 . T A 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DP=29;Dels=0.00;FS=2.048;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.08;MQ0=7;MQRankSum=0.548;QD=2.48;ReadPosRankSum=-0.392;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:10,19:29:32:102,0,32 chrIX 392188 . A G 13.25 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DP=36;Dels=0.00;FS=18.524;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=20.08;MQ0=10;MQRankSum=0.746;QD=0.37;ReadPosRankSum=-1.030;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:11,25:36:18:43,0,18 chrIX 392209 . G T 12.37 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=38;Dels=0.00;FS=1.967;HaplotypeScore=11.7207;MLEAC=1;MLEAF=0.500;MQ=20.72;MQ0=7;MQRankSum=1.687;QD=0.33;ReadPosRankSum=-1.489;SB=-3.411e+01 GT:AD:DP:GQ:PL 0/1:20,18:38:13:42,0,13 chrIX 392245 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=10.5852;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=6;QD=0.34;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:2,39:41:6:45,6,0 chrIX 392256 . T A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.066;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=2.9430;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=5;MQRankSum=-0.946;QD=0.55;ReadPosRankSum=1.034;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:14,21:35:6:51,6,0 chrIX 392269 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.186;DP=45;Dels=0.00;FS=6.601;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=6;MQRankSum=1.186;QD=0.44;ReadPosRankSum=0.553;SB=-4.977e+01 GT:AD:DP:GQ:PL 1/1:8,37:45:6:51,6,0 chrIX 392284 . A G 13.32 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9726;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=5;MQRankSum=-0.420;QD=0.27;ReadPosRankSum=0.344;SB=-1.611e+01 GT:AD:DP:GQ:PL 0/1:33,16:49:13:43,0,13 chrIX 392326 . G A 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.771;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=3;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.542;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,20:21:6:47,6,0 chrIX 392548 . A G 256.21 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;DP=30;Dels=0.00;FS=23.295;HaplotypeScore=3.9278;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=4;MQRankSum=-0.036;QD=8.54;ReadPosRankSum=0.604;SB=-5.822e+01 GT:AD:DP:GQ:PL 1/1:7,23:30:16:289,16,0 chrIX 392551 . G A 291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DP=29;Dels=0.00;FS=5.441;HaplotypeScore=6.8955;MLEAC=2;MLEAF=1.00;MQ=23.09;MQ0=1;MQRankSum=-0.990;QD=10.03;ReadPosRankSum=1.609;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:39:324,39,0 chrIX 392587 . A G 348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=39;Dels=0.00;FS=4.901;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=2;MQRankSum=-1.223;QD=8.92;ReadPosRankSum=-0.408;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:5,34:39:48:381,48,0 chrIX 392602 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=40;Dels=0.00;FS=41.091;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=2;MQRankSum=-0.092;QD=0.85;ReadPosRankSum=-0.646;SB=-6.502e-03 GT:AD:DP:GQ:PL 0/1:32,8:40:64:64,0,264 chrIX 392629 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DP=31;Dels=0.00;FS=19.890;HaplotypeScore=8.0715;MLEAC=1;MLEAF=0.500;MQ=20.15;MQ0=3;MQRankSum=-0.230;QD=0.37;ReadPosRankSum=2.134;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:26,5:31:41:41,0,97 chrIX 392632 . G A 108.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=17.97;MQ0=3;MQRankSum=-1.569;QD=4.34;ReadPosRankSum=-0.248;SB=-5.648e+01 GT:AD:DP:GQ:PL 1/1:2,22:25:2:138,2,0 chrIX 392643 . T A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=1.9454;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=3;MQRankSum=0.813;QD=1.40;ReadPosRankSum=-0.054;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:9,10:19:58:58,0,95 chrIX 392656 . A G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=3;MQRankSum=-0.329;QD=1.24;ReadPosRankSum=1.951;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:16,17:33:71:71,0,113 chrIX 392668 . A G 93.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;DP=43;Dels=0.00;FS=9.919;HaplotypeScore=10.3844;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=3;MQRankSum=0.525;QD=2.16;ReadPosRankSum=-2.254;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:27,15:43:68:123,0,68 chrIX 392671 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DP=46;Dels=0.00;FS=6.330;HaplotypeScore=10.3844;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=3;MQRankSum=1.294;QD=0.29;ReadPosRankSum=1.001;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,14:46:43:43,0,154 chrIX 392677 . G T 212.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=52;Dels=0.00;FS=16.075;HaplotypeScore=14.9396;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=3;MQRankSum=0.455;QD=4.08;ReadPosRankSum=-1.404;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:23,29:52:61:242,0,61 chrIX 392683 . A G 251.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;DP=56;Dels=0.00;FS=24.540;HaplotypeScore=17.6909;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=3;MQRankSum=1.651;QD=4.48;ReadPosRankSum=-2.784;SB=-2.350e+02 GT:AD:DP:GQ:PL 0/1:26,28:56:28:281,0,28 chrIX 392704 . A G 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=4.329;HaplotypeScore=16.9483;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=1;MQRankSum=0.949;QD=11.07;ReadPosRankSum=1.691;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:974,111,0 chrIX 392776 . A G 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.655;HaplotypeScore=11.6664;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;MQRankSum=1.404;QD=19.27;ReadPosRankSum=1.643;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2307,276,0 chrIX 392932 . G T 588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=33.1438;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;MQRankSum=1.257;QD=13.07;ReadPosRankSum=2.095;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:3,42:45:49:621,49,0 chrIX 392939 . C G 491.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.105;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=37.2576;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=-0.230;QD=11.42;ReadPosRankSum=1.317;SB=-1.587e+02 GT:AD:DP:GQ:PL 1/1:4,39:43:19:524,19,0 chrIX 392968 . G A 242 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=26.6473;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=7.12;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:275,33,0 chrIX 392998 . G A 246 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=27.4477;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=6.65;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:33:279,33,0 chrIX 393028 . G A 601 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=48.9693;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=11.78;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:634,72,0 chrIX 393067 . A G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;MQRankSum=-0.021;QD=15.70;ReadPosRankSum=1.690;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1352,156,0 chrIX 393106 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.9246;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.89;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2300,258,0 chrIX 393177 . G T 1680 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.87;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1713,186,0 chrIX 393181 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=15.80;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1566,174,0 chrIX 393280 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.04;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1817,207,0 chrIX 393403 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=18.66;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1862,204,0 chrIX 393406 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=20.15;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1887,210,0 chrIX 393415 . A G 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=93;Dels=0.00;FS=2.996;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=0;MQRankSum=-0.225;QD=18.30;ReadPosRankSum=2.317;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1735,198,0 chrIX 393511 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.13;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2462,267,0 chrIX 393592 . T A 1699 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.53;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1732,195,0 chrIX 393622 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.36;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1723,186,0 chrIX 393738 . C T 1275 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=15.18;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1308,147,0 chrIX 393745 . T G 1151 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-0.666;QD=14.76;ReadPosRankSum=1.599;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1184,135,0 chrIX 393746 . A T 1032 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=13.58;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1065,123,0 chrIX 393794 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=62.2604;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=15.07;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1284,138,0 chrIX 393829 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=17.74;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1683,189,0 chrIX 393886 . G C 1266 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=17.11;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1299,144,0 chrIX 393889 . A C 1299 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=17.55;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1332,147,0 chrIX 393931 . T A 764 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=14.98;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:797,87,0 chrIX 393945 . C T 888 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=17.41;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:921,99,0 chrIX 393995 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.57;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1070,126,0 chrIX 394211 . T G 1483 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.26;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1516,171,0 chrIX 394214 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.21;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1666,180,0 chrIX 394371 . C G 1248 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.11;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1281,144,0 chrIX 394423 . T C 1113 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.87;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1146,129,0 chrIX 394650 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.771;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.770;QD=18.32;ReadPosRankSum=1.684;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1352,150,0 chrIX 394651 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.85;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1336,147,0 chrIX 394847 . T C 814 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:847,96,0 chrIX 394906 . A T 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=3.229;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.824;QD=22.98;ReadPosRankSum=1.675;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1458,156,0 chrIX 395011 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.525;QD=22.21;ReadPosRankSum=1.680;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1499,168,0 chrIX 395125 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.97;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1323,147,0 chrIX 395136 . A G 1170 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.73;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1203,138,0 chrIX 395469 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.095;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.201;QD=19.85;ReadPosRankSum=1.659;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1919,219,0 chrIX 395486 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.89;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2082,237,0 chrIX 395890 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.95;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2149,234,0 chrIX 395916 . C T 1849 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.26;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1882,207,0 chrIX 396434 . C G 1554 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.92;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1587,183,0 chrIX 396592 . T G 1672 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.39;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1705,198,0 chrIX 396753 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.54;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1471,159,0 chrIX 396988 . T A 2016 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.22;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2049,234,0 chrIX 397063 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1362,153,0 chrIX 397548 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.01;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1819,204,0 chrIX 397585 . T C 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.8032;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.201;QD=19.59;ReadPosRankSum=1.692;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1737,195,0 chrIX 398262 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=19.10;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1752,192,0 chrIX 398298 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=18.82;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1689,189,0 chrIX 398416 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.50;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2206,246,0 chrIX 398457 . G C 1550 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.39;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1583,180,0 chrIX 398466 . T A 1553 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.91;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1586,174,0 chrIX 398482 . T G 1154 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.75;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1187,135,0 chrIX 399239 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.0674;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.71;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1530,165,0 chrIX 399357 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=14.24;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1172,132,0 chrIX 399358 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=14.38;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1140,129,0 chrIX 399370 . A C 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=9.787;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;MQRankSum=-2.011;QD=13.99;ReadPosRankSum=2.382;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1054,117,0 chrIX 399384 . G A 751 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=10.73;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:84:784,84,0 chrIX 399393 . C T 491 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=7.92;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:60:524,60,0 chrIX 399396 . T A 504 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=7.87;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:60:537,60,0 chrIX 399414 . A G 565 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=10.27;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:69:598,69,0 chrIX 399492 . T C 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.182;QD=19.13;ReadPosRankSum=1.641;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1506,171,0 chrIX 399532 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9449;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.96;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1531,168,0 chrIX 399554 . G C 1725 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.54;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1758,198,0 chrIX 400007 . T A,G 205.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.2424;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.09;MQ0=3;QD=2.33;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/2:0,14,74:88:73:265,94,73,172,0,160 chrIX 401177 . T C 919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=4.349;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.884;QD=18.76;ReadPosRankSum=1.662;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:952,111,0 chrIX 401259 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.27;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1290,138,0 chrIX 401270 . C A 1220 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1393;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.77;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1253,138,0 chrIX 401375 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1571,177,0 chrIX 401856 . C T 2765 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.24;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2798,300,0 chrIX 401897 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=13.95;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1777,198,0 chrIX 401900 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.137;QD=14.87;ReadPosRankSum=1.705;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1907,216,0 chrIX 402026 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2734,300,0 chrIX 402165 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.33;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1328,150,0 chrIX 402823 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.93;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1169,126,0 chrIX 402833 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.556;QD=19.92;ReadPosRankSum=1.667;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1089,123,0 chrIX 403009 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.84;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1609,177,0 chrIX 403261 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.693;DP=114;Dels=0.00;FS=8.107;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.021;QD=16.74;ReadPosRankSum=3.763;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:5,108:114:99:1941,216,0 chrIX 403264 . C A 2131 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=18.69;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2164,237,0 chrIX 403289 . A G 2722 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.16;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2755,309,0 chrIX 403447 . C T 2841 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.87;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2874,312,0 chrIX 403510 . C T 2923 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.34;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2956,330,0 chrIX 403760 . A G 2422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=116;Dels=0.00;FS=2.953;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.851;QD=20.88;ReadPosRankSum=2.407;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2455,276,0 chrIX 403814 . T C 2348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.525;QD=20.07;ReadPosRankSum=1.703;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2381,273,0 chrIX 403850 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.16;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2694,309,0 chrIX 403943 . C T 3394.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=17.8641;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.55;SB=-1.975e+03 GT:AD:DP:GQ:PL 1/1:0,181:183:99:3394,375,0 chrIX 403997 . G A 2548 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.81;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2581,279,0 chrIX 404267 . G A 2938 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2971,321,0 chrIX 404297 . G A 2988 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.22;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:3021,336,0 chrIX 405428 . T G 2159 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.38;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2192,252,0 chrIX 405513 . G T 2236 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.33;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2269,255,0 chrIX 405539 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=3.043;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.104;QD=17.48;ReadPosRankSum=2.412;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2305,267,0 chrIX 405644 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=21.53;ReadPosRankSum=1.697;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2186,252,0 chrIX 405821 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.97;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2064,228,0 chrIX 405945 . A G 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.508;QD=15.43;ReadPosRankSum=2.362;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:897,102,0 chrIX 406173 . A G 1140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=0.112;QD=18.39;ReadPosRankSum=1.676;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1173,132,0 chrIX 406184 . G T 931 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=18.62;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:964,105,0 chrIX 406186 . G C 907 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=18.51;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:940,105,0 chrIX 406436 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.51;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2165,246,0 chrIX 406590 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.84;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1835,210,0 chrIX 406596 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.35;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1855,204,0 chrIX 407301 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.25;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1650,177,0 chrIX 407727 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.22;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1610,183,0 chrIX 408110 . T G 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=4.9146;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.866;QD=19.42;ReadPosRankSum=1.689;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1587,183,0 chrIX 408521 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.92;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1895,213,0 chrIX 408533 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.80;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1696,195,0 chrIX 408614 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.34;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1887,216,0 chrIX 409106 . A T 1262 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.53;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1295,150,0 chrIX 409119 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.65;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1382,153,0 chrIX 409169 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.9018;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.54;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1557,174,0 chrIX 409424 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1364,153,0 chrIX 411481 . T A 1746 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.54;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1779,195,0 chrIX 411520 . A G 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=2.799;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.449;QD=18.13;ReadPosRankSum=2.363;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1574,177,0 chrIX 411541 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.37;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1423,165,0 chrIX 411868 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1485,171,0 chrIX 411882 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.23;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1325,156,0 chrIX 411905 . T C 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.310;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=-1.640;QD=16.00;ReadPosRankSum=1.686;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1249,144,0 chrIX 411955 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=17.22;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1135,126,0 chrIX 411968 . A T 1047 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=15.63;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1080,120,0 chrIX 411969 . T C 1021 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=-1.274;QD=14.80;ReadPosRankSum=1.681;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1054,123,0 chrIX 411976 . C T 1176 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=15.68;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1209,132,0 chrIX 412003 . T A 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=73;Dels=0.00;FS=6.041;HaplotypeScore=6.8371;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-0.620;QD=13.25;ReadPosRankSum=2.903;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1000,111,0 chrIX 412084 . A G 1445 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.08;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1478,168,0 chrIX 412152 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.26;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:965,108,0 chrIX 412153 . A T 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.192;QD=18.30;ReadPosRankSum=1.668;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1021,111,0 chrIX 412186 . G A 681 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=14.49;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:714,81,0 chrIX 412202 . T C 729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;DP=50;Dels=0.00;FS=6.295;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;MQRankSum=-1.272;QD=14.58;ReadPosRankSum=2.815;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:3,46:50:71:762,71,0 chrIX 412260 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.41;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1217,135,0 chrIX 412264 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.53;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1303,141,0 chrIX 412381 . A G 2145 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.05;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2178,243,0 chrIX 412495 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.866;QD=21.49;ReadPosRankSum=1.693;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1946,225,0 chrIX 412510 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.12;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1847,210,0 chrIX 414362 . T C 2347 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.57;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2380,270,0 chrIX 414531 . G C 2360 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.52;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2393,270,0 chrIX 414641 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.72;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2075,237,0 chrIX 414726 . T C 2430 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.98;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2463,276,0 chrIX 414735 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.24;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2422,276,0 chrIX 414918 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.71;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2162,240,0 chrIX 415204 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.023;QD=18.89;ReadPosRankSum=2.855;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:3,87:91:99:1752,201,0 chrIX 415367 . G C 2251 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.24;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2284,258,0 chrIX 415428 . G A 2492 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.67;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2525,276,0 chrIX 415609 . G T 1407 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1440,159,0 chrIX 415833 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.81;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1760,189,0 chrIX 415861 . A T 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=91;Dels=0.00;FS=4.357;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.962;QD=18.10;ReadPosRankSum=1.655;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1680,186,0 chrIX 415873 . A G 1739 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.54;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1772,204,0 chrIX 416339 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.8697;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.09;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1509,168,0 chrIX 416543 . T C 1221 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.50;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1254,144,0 chrIX 416627 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1050,120,0 chrIX 416694 . C G 969 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.94;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1002,111,0 chrIX 416771 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:96:851,96,0 chrIX 417371 . T C 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.712;QD=19.74;ReadPosRankSum=1.678;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2599,294,0 chrIX 417395 . C T 2516 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.50;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2549,282,0 chrIX 419726 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.81;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:890,96,0 chrIX 419811 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.82;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1517,165,0 chrIX 419849 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.09;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1535,177,0 chrIX 419999 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=102;Dels=0.00;FS=6.510;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.109;QD=19.36;ReadPosRankSum=2.401;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2008,231,0 chrIX 420080 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0755;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.74;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2107,234,0 chrIX 420167 . T G 1280 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.10;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1313,153,0 chrIX 420518 . A G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2792;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.748;QD=17.51;ReadPosRankSum=1.659;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1696,192,0 chrIX 420530 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.27;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1555,171,0 chrIX 420788 . C G 1355 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.94;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1388,156,0 chrIX 421475 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.01;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2134,231,0 chrIX 421818 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=15.12;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1212,135,0 chrIX 421865 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=17.32;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1748,198,0 chrIX 422140 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.49;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1586,177,0 chrIX 422317 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2241,258,0 chrIX 422694 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.21;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1962,210,0 chrIX 423589 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.94;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1594,183,0 chrIX 423805 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1315;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.08;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2780,309,0 chrIX 424253 . A G 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=3.048;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.259;QD=21.63;ReadPosRankSum=2.389;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1785,201,0 chrIX 424322 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.00;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1382,156,0 chrIX 424761 . C A 1104 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=18.40;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1137,123,0 chrIX 424776 . A G 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=-1.017;QD=16.33;ReadPosRankSum=1.622;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1062,120,0 chrIX 424793 . T C 580 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=58;Dels=0.00;FS=8.273;HaplotypeScore=4.4838;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-1.856;QD=10.00;ReadPosRankSum=3.657;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:5,53:58:81:613,81,0 chrIX 424794 . C T 586 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.018;DP=60;Dels=0.02;FS=2.512;HaplotypeScore=11.0784;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-1.156;QD=9.77;ReadPosRankSum=2.605;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:81:619,81,0 chrIX 424795 . C T 663 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=12.0717;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=10.87;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:696,87,0 chrIX 425001 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.49;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1924,213,0 chrIX 425026 . A G 1394 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.10;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1427,165,0 chrIX 425132 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=22.70;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1826,201,0 chrIX 425137 . G T 1608 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.85;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1641,183,0 chrIX 425281 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3344;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.52;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1970,210,0 chrIX 425407 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.07;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1406,153,0 chrIX 425440 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.75;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1830,210,0 chrIX 425460 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=3.768;HaplotypeScore=6.0996;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.282;QD=18.72;ReadPosRankSum=1.697;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1924,222,0 chrIX 425491 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.20;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1934,210,0 chrIX 425513 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.36;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1582,174,0 chrIX 426001 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.08;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1930,219,0 chrIX 426032 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.40;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1527,174,0 chrIX 426151 . T A 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.74;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1630,180,0 chrIX 426184 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.077;QD=19.92;ReadPosRankSum=2.327;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1627,183,0 chrIX 426260 . T A 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=98;Dels=0.00;FS=14.250;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.171;QD=16.76;ReadPosRankSum=3.295;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1675,192,0 chrIX 426339 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.04;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1422,162,0 chrIX 426423 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.96;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1636,183,0 chrIX 426506 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=20.00;ReadPosRankSum=1.689;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1633,186,0 chrIX 426627 . C A 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=3.115;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.907;QD=21.60;ReadPosRankSum=-0.165;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1869,201,0 chrIX 427584 . A C 1170 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.50;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1203,135,0 chrIX 427600 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=17.91;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1358,153,0 chrIX 428304 . G C 1223 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2067;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.38;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1256,141,0 chrIX 428359 . A G 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-0.360;QD=16.89;ReadPosRankSum=1.667;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:928,105,0 chrIX 428376 . A G 976 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=16.54;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1009,117,0 chrIX 428399 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=14.77;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1082,120,0 chrIX 428400 . T C 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=5.088;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.171;QD=13.42;ReadPosRankSum=1.683;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:986,114,0 chrIX 428461 . C G 966 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=16.37;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:999,111,0 chrIX 428537 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=18.11;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1192,135,0 chrIX 428607 . G A 493 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=12.97;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:526,60,0 chrIX 428609 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=13.90;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:575,63,0 chrIX 428656 . C G 411 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=14.17;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:444,51,0 chrIX 428720 . T G 597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=38;Dels=0.00;FS=4.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=1.277;QD=15.71;ReadPosRankSum=1.641;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:72:630,72,0 chrIX 428722 . A G 583 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.545;QD=16.66;ReadPosRankSum=1.634;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:72:616,72,0 chrIX 428729 . C T 587 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.26;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:620,69,0 chrIX 428764 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=19.67;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1036,114,0 chrIX 428776 . A C 933 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=19.04;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:966,111,0 chrIX 428868 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=20.00;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1433,159,0 chrIX 428895 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.48;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1414,156,0 chrIX 428912 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=17.03;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1361,159,0 chrIX 428931 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=16.18;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1295,150,0 chrIX 428948 . C T 1025 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.86;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1058,123,0 chrIX 428983 . A C 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=5.035;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-1.732;QD=15.98;ReadPosRankSum=1.529;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:96:848,96,0 chrIX 429037 . T C 1209 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.71;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1242,141,0 chrIX 429127 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=18.10;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1445,162,0 chrIX 429153 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=13.75;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1119,126,0 chrIX 429223 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=12.85;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1087,120,0 chrIX 429241 . T G 1310 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=14.56;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1343,156,0 chrIX 429462 . T A 1076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-0.782;QD=17.35;ReadPosRankSum=-0.726;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1109,123,0 chrIX 429465 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.45;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1053,120,0 chrIX 430005 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=18.6545;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.87;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2199,234,0 chrIX 430247 . G C 1288 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.41;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1321,150,0 chrIX 430414 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.12;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1765,198,0 chrIX 430585 . G A 120.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=5.9400;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=8.58;SB=-5.088e+01 GT:AD:DP:GQ:PL 1/1:0,12:14:18:153,18,0 chrIX 431344 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.37;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2315,267,0 chrIX 431404 . C T 2915 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.30;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:2948,333,0 chrIX 431755 . T C 2799 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5511;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=21.05;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2832,324,0 chrIX 431988 . A C 1072 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1689;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=4;MQRankSum=-1.732;QD=16.24;ReadPosRankSum=1.229;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1105,123,0 chrIX 432102 . T A 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=3.931;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=3;MQRankSum=-1.732;QD=14.58;ReadPosRankSum=1.615;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1374,150,0 chrIX 432192 . G A 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.415;DP=101;Dels=0.01;FS=4.019;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=3.592;QD=18.44;ReadPosRankSum=0.254;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:6,94:100:99:1895,164,0 chrIX 432430 . C T 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.665;DP=80;Dels=0.00;FS=13.173;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=43.46;MQ0=1;MQRankSum=-4.227;QD=1.58;ReadPosRankSum=-0.470;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,17:80:99:156,0,1269 chrIX 433009 . G A 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;MQRankSum=0.630;QD=18.52;ReadPosRankSum=1.522;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1255,138,0 chrIX 433113 . A C 445.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;DP=100;Dels=0.00;FS=0.761;HaplotypeScore=13.1972;MLEAC=1;MLEAF=0.500;MQ=34.39;MQ0=2;MQRankSum=-5.160;QD=4.45;ReadPosRankSum=2.203;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:55,45:100:99:475,0,890 chrIX 433180 . A G 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;DP=74;Dels=0.00;FS=21.712;HaplotypeScore=7.0525;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=1;MQRankSum=-3.168;QD=1.35;ReadPosRankSum=-2.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,18:74:99:130,0,924 chrIX 433189 . G T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DP=66;Dels=0.00;FS=22.292;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=38.07;MQ0=0;MQRankSum=-3.061;QD=0.21;ReadPosRankSum=-3.328;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,12:66:44:44,0,834 chrIX 433627 . G A 1036.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=1;MLEAF=0.500;MQ=30.95;MQ0=20;MQRankSum=2.525;QD=7.51;ReadPosRankSum=-0.103;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:29,108:138:84:1066,0,84 chrIX 434856 . T A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.70;SB=-1.920e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3451,372,0 chrIX 435321 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.67;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2514,288,0 chrIX 436329 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=14.4661;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=12.59;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:96:839,96,0 chrIX 436353 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=68;Dels=0.00;FS=8.804;HaplotypeScore=14.4162;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=2.377;QD=22.76;ReadPosRankSum=0.780;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1581,174,0 chrIX 437631 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.057;DP=110;Dels=0.00;FS=2.141;HaplotypeScore=12.3694;MLEAC=1;MLEAF=0.500;MQ=45.72;MQ0=14;MQRankSum=-5.987;QD=0.13;ReadPosRankSum=1.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,25:110:44:44,0,1401 chrIX 437639 . A G 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933;DP=108;Dels=0.00;FS=8.559;HaplotypeScore=23.9421;MLEAC=1;MLEAF=0.500;MQ=45.65;MQ0=13;MQRankSum=-6.675;QD=0.83;ReadPosRankSum=2.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,34:108:99:120,0,1222 chrIX 437779 . T G 1315 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.418;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=10;MQRankSum=2.970;QD=17.08;ReadPosRankSum=-0.680;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:14,63:77:99:1348,107,0 chrIX 437840 . C T 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;DP=80;Dels=0.00;FS=24.163;HaplotypeScore=6.6971;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=1;MQRankSum=-5.619;QD=0.56;ReadPosRankSum=-2.919;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,16:80:75:75,0,1233 chrIX 437853 . A C 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;DP=83;Dels=0.00;FS=13.322;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=0;MQRankSum=-6.991;QD=2.76;ReadPosRankSum=-0.707;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:60,23:83:99:259,0,881 chrIX 437886 . G A 582.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.129;DP=100;Dels=0.00;FS=9.689;HaplotypeScore=8.0875;MLEAC=1;MLEAF=0.500;MQ=47.85;MQ0=0;MQRankSum=-8.296;QD=5.82;ReadPosRankSum=2.473;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:53,46:100:99:612,0,955 chrIX 437940 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.15;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2106,243,0 chrIX 437963 . A G 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DP=79;Dels=0.00;FS=14.179;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=1;MQRankSum=-5.814;QD=0.84;ReadPosRankSum=-1.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,15:79:96:96,0,1088 chrIX 437965 . T G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;DP=78;Dels=0.00;FS=8.842;HaplotypeScore=8.9117;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=1;MQRankSum=-5.607;QD=0.62;ReadPosRankSum=-1.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,14:78:78:78,0,1098 chrIX 437999 . T C 1466 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=6;QD=18.56;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1499,174,0 chrIX 438330 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.58;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1021,117,0 chrIX 438399 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;DP=78;Dels=0.00;FS=42.110;HaplotypeScore=13.8360;MLEAC=1;MLEAF=0.500;MQ=49.48;MQ0=0;MQRankSum=-7.237;QD=0.42;ReadPosRankSum=0.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,27:78:63:63,0,958 chrIX 438409 . T C 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;DP=92;Dels=0.00;FS=23.068;HaplotypeScore=14.7127;MLEAC=1;MLEAF=0.500;MQ=49.67;MQ0=0;MQRankSum=-6.039;QD=0.55;ReadPosRankSum=2.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,22:92:81:81,0,910 chrIX 438410 . A G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;DP=93;Dels=0.00;FS=26.204;HaplotypeScore=9.8734;MLEAC=1;MLEAF=0.500;MQ=49.79;MQ0=0;MQRankSum=-5.553;QD=0.30;ReadPosRankSum=2.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:70,22:93:58:58,0,1040 chrIX 438412 . T A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;DP=94;Dels=0.00;FS=22.934;HaplotypeScore=11.7365;MLEAC=1;MLEAF=0.500;MQ=49.54;MQ0=0;MQRankSum=-5.374;QD=0.59;ReadPosRankSum=2.533;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,21:94:85:85,0,999 chrIX 438417 . T C 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;DP=100;Dels=0.00;FS=25.999;HaplotypeScore=12.5543;MLEAC=1;MLEAF=0.500;MQ=47.87;MQ0=0;MQRankSum=-6.421;QD=0.36;ReadPosRankSum=1.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,28:100:66:66,0,1082 chrIX 438445 . C T 2054 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=130.6355;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=18.18;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2087,231,0 chrIX 438449 . T C 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.461;DP=123;Dels=0.00;FS=42.326;HaplotypeScore=82.4233;MLEAC=1;MLEAF=0.500;MQ=48.76;MQ0=0;MQRankSum=-9.181;QD=0.80;ReadPosRankSum=0.928;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,46:123:99:129,0,1570 chrIX 438451 . A G 77.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.926;DP=125;Dels=0.00;FS=52.239;HaplotypeScore=57.2296;MLEAC=1;MLEAF=0.500;MQ=48.96;MQ0=0;MQRankSum=-9.146;QD=0.62;ReadPosRankSum=1.134;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,47:125:99:107,0,1603 chrIX 438461 . C T 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.154;DP=133;Dels=0.00;FS=58.208;HaplotypeScore=60.1713;MLEAC=1;MLEAF=0.500;MQ=49.39;MQ0=0;MQRankSum=-9.595;QD=0.67;ReadPosRankSum=1.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,50:133:99:119,0,1594 chrIX 438482 . G A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.580;DP=142;Dels=0.00;FS=62.265;HaplotypeScore=22.9957;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=-10.084;QD=0.35;ReadPosRankSum=-4.028;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,59:142:79:79,0,1693 chrIX 438508 . T C 1412.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.157;DP=114;Dels=0.00;FS=49.329;HaplotypeScore=86.5801;MLEAC=1;MLEAF=0.500;MQ=50.46;MQ0=0;MQRankSum=8.609;QD=12.39;ReadPosRankSum=1.753;SB=-6.711e+02 GT:AD:DP:GQ:PL 0/1:38,75:114:13:1442,0,13 chrIX 438622 . G T 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.452;DP=139;Dels=0.00;FS=58.143;HaplotypeScore=35.5568;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=5;MQRankSum=-9.972;QD=1.30;ReadPosRankSum=0.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,68:139:99:210,0,1410 chrIX 438696 . T C 55.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.041;DP=122;Dels=0.00;FS=3.973;HaplotypeScore=40.3477;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=-7.181;QD=0.45;ReadPosRankSum=-2.225;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:94,28:122:85:85,0,1896 chrIX 438699 . T A 54.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;DP=120;Dels=0.00;FS=2.524;HaplotypeScore=36.2063;MLEAC=1;MLEAF=0.500;MQ=49.90;MQ0=0;MQRankSum=-6.618;QD=0.45;ReadPosRankSum=-2.482;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:95,25:120:84:84,0,1927 chrIX 438700 . G A 246.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DP=120;Dels=0.00;FS=3.473;HaplotypeScore=36.2063;MLEAC=1;MLEAF=0.500;MQ=49.90;MQ0=0;MQRankSum=-7.944;QD=2.05;ReadPosRankSum=-3.143;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:83,37:120:99:276,0,1703 chrIX 438718 . T G 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;DP=120;Dels=0.00;FS=5.709;HaplotypeScore=9.0104;MLEAC=1;MLEAF=0.500;MQ=51.30;MQ0=0;MQRankSum=-7.171;QD=0.58;ReadPosRankSum=-3.556;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:98,22:120:99:99,0,2054 chrIX 438765 . A G 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=136;Dels=0.00;FS=37.284;HaplotypeScore=19.6949;MLEAC=1;MLEAF=0.500;MQ=49.80;MQ0=2;MQRankSum=-9.062;QD=2.55;ReadPosRankSum=2.983;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,41:136:99:377,0,1695 chrIX 438773 . C T 235.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DP=156;Dels=0.00;FS=12.292;HaplotypeScore=30.8398;MLEAC=1;MLEAF=0.500;MQ=48.25;MQ0=2;MQRankSum=-7.767;QD=1.51;ReadPosRankSum=3.174;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,41:156:99:265,0,1977 chrIX 438783 . C A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DP=174;Dels=0.00;FS=38.531;HaplotypeScore=28.5929;MLEAC=1;MLEAF=0.500;MQ=45.98;MQ0=2;MQRankSum=-4.463;QD=0.43;ReadPosRankSum=-4.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,25:174:99:104,0,2649 chrIX 438794 . T C 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DP=175;Dels=0.00;FS=34.691;HaplotypeScore=9.5153;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=2;MQRankSum=-4.885;QD=0.25;ReadPosRankSum=-2.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,26:175:73:73,0,2317 chrIX 438856 . G A 2951.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=10.172;DP=279;Dels=0.00;FS=0.460;HaplotypeScore=16.4167;MLEAC=1;MLEAF=0.500;MQ=41.45;MQ0=0;MQRankSum=-13.598;QD=10.58;ReadPosRankSum=0.868;SB=-1.534e+03 GT:AD:DP:GQ:PL 0/1:102,174:279:99:2981,0,1621 chrIX 438878 . T A 2959.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.677;DP=295;Dels=0.00;FS=2.086;HaplotypeScore=36.2973;MLEAC=1;MLEAF=0.500;MQ=42.43;MQ0=0;MQRankSum=-14.526;QD=10.03;ReadPosRankSum=2.131;SB=-1.194e+03 GT:AD:DP:GQ:PL 0/1:119,176:295:99:2989,0,1983 chrIX 438915 . C T 1427.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;DP=335;Dels=0.00;FS=6.053;HaplotypeScore=40.7663;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=1;MQRankSum=-11.106;QD=4.26;ReadPosRankSum=4.249;SB=-7.210e+02 GT:AD:DP:GQ:PL 0/1:214,120:335:99:1457,0,3668 chrIX 438927 . A G 2003.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;DP=271;Dels=0.00;FS=6.508;HaplotypeScore=25.0888;MLEAC=1;MLEAF=0.500;MQ=43.22;MQ0=1;MQRankSum=-12.356;QD=7.39;ReadPosRankSum=-0.055;SB=-1.010e+03 GT:AD:DP:GQ:PL 0/1:136,135:271:99:2033,0,1986 chrIX 438951 . A G 1469.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.051;DP=221;Dels=0.00;FS=11.355;HaplotypeScore=41.6329;MLEAC=1;MLEAF=0.500;MQ=43.24;MQ0=1;MQRankSum=-11.395;QD=6.65;ReadPosRankSum=0.156;SB=-5.670e+02 GT:AD:DP:GQ:PL 0/1:115,105:221:99:1499,0,1927 chrIX 438972 . G A 723.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.580;DP=181;Dels=0.00;FS=48.335;HaplotypeScore=32.8626;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=1;MQRankSum=-8.177;QD=3.99;ReadPosRankSum=-1.287;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:114,67:181:99:753,0,1723 chrIX 438993 . A G 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;DP=175;Dels=0.00;FS=98.153;HaplotypeScore=19.1105;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=1;MQRankSum=-6.858;QD=0.93;ReadPosRankSum=-1.605;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,45:175:99:193,0,2092 chrIX 439126 . A G 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=321.2088;MLEAC=1;MLEAF=0.500;MQ=30.65;MQ0=4;MQRankSum=-3.806;QD=0.76;ReadPosRankSum=-1.134;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:263,92:365:99:308,0,2060 chrIX 439132 . A G 711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.801;DP=375;Dels=0.00;FS=9.186;HaplotypeScore=412.2031;MLEAC=1;MLEAF=0.500;MQ=31.17;MQ0=3;MQRankSum=-5.121;QD=1.90;ReadPosRankSum=-0.165;SB=-1.067e+03 GT:AD:DP:GQ:PL 0/1:149,222:375:99:741,0,1818 chrIX 439158 . T G 4573.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.083;DP=435;Dels=0.00;FS=2.585;HaplotypeScore=161.1436;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=4;MQRankSum=-1.409;QD=10.51;ReadPosRankSum=0.803;SB=-3.207e+03 GT:AD:DP:GQ:PL 1/1:2,432:435:99:4573,554,0 chrIX 439163 . A T 1406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.756;DP=449;Dels=0.00;FS=2.664;HaplotypeScore=89.5165;MLEAC=1;MLEAF=0.500;MQ=32.03;MQ0=3;MQRankSum=-6.394;QD=3.13;ReadPosRankSum=-0.262;SB=-1.302e+03 GT:AD:DP:GQ:PL 0/1:176,270:449:99:1436,0,2561 chrIX 439186 . C T 558.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.451;DP=436;Dels=0.00;FS=5.579;HaplotypeScore=400.1862;MLEAC=1;MLEAF=0.500;MQ=34.08;MQ0=2;MQRankSum=-7.086;QD=1.28;ReadPosRankSum=-1.344;SB=-4.030e+02 GT:AD:DP:GQ:PL 0/1:304,132:436:99:588,0,4091 chrIX 439202 . T C 1710.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.804;DP=414;Dels=0.00;FS=0.763;HaplotypeScore=447.4589;MLEAC=1;MLEAF=0.500;MQ=35.04;MQ0=5;MQRankSum=-6.405;QD=4.13;ReadPosRankSum=2.411;SB=-1.216e+03 GT:AD:DP:GQ:PL 0/1:204,210:414:99:1740,0,2525 chrIX 439208 . C T 1294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;DP=414;Dels=0.00;FS=0.374;HaplotypeScore=296.3145;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=6;MQRankSum=-8.530;QD=3.13;ReadPosRankSum=-2.609;SB=-9.350e+02 GT:AD:DP:GQ:PL 0/1:205,208:414:99:1324,0,3005 chrIX 439235 . A G 1300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.994;DP=353;Dels=0.00;FS=11.836;HaplotypeScore=384.3504;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=6;MQRankSum=-8.963;QD=3.68;ReadPosRankSum=0.586;SB=-6.170e+02 GT:AD:DP:GQ:PL 0/1:182,170:353:99:1330,0,2698 chrIX 439239 . G A 434.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.166;DP=342;Dels=0.00;FS=8.182;HaplotypeScore=323.6324;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=6;MQRankSum=-2.895;QD=1.27;ReadPosRankSum=-1.866;SB=-2.870e+02 GT:AD:DP:GQ:PL 0/1:271,70:342:99:464,0,3308 chrIX 439241 . T C 213.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827;DP=339;Dels=0.00;FS=34.274;HaplotypeScore=312.1126;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=6;MQRankSum=-5.485;QD=0.63;ReadPosRankSum=1.245;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:241,88:339:99:243,0,3633 chrIX 439275 . G A 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.545;DP=247;Dels=0.00;FS=28.212;HaplotypeScore=136.9456;MLEAC=1;MLEAF=0.500;MQ=31.45;MQ0=6;MQRankSum=-4.302;QD=0.53;ReadPosRankSum=-1.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:175,72:247:99:160,0,2589 chrIX 439278 . A G 751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.636;DP=243;Dels=0.00;FS=142.112;HaplotypeScore=118.9903;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=8;MQRankSum=-6.145;QD=3.09;ReadPosRankSum=-0.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,118:243:99:781,0,1998 chrIX 439323 . A G 1050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;DP=202;Dels=0.00;FS=1.980;HaplotypeScore=19.8006;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=9;MQRankSum=2.311;QD=5.20;ReadPosRankSum=1.169;SB=-7.100e+02 GT:AD:DP:GQ:PL 0/1:73,124:202:39:1080,0,39 chrIX 439331 . C T 1860 filter AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=55.3604;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=9;QD=8.16;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,228:228:99:1893,225,0 chrIX 439341 . A G 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392;DP=237;Dels=0.01;FS=169.351;HaplotypeScore=136.4373;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=9;MQRankSum=-3.601;QD=1.11;ReadPosRankSum=2.309;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,69:235:99:293,0,1460 chrIX 439392 . G A 2334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.668;DP=284;Dels=0.00;FS=139.332;HaplotypeScore=310.8822;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=11;MQRankSum=3.515;QD=8.22;ReadPosRankSum=4.869;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:115,168:284:99:2364,0,864 chrIX 439395 . A G 461.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DP=289;Dels=0.00;FS=99.830;HaplotypeScore=308.1605;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=12;MQRankSum=5.238;QD=1.60;ReadPosRankSum=6.799;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:240,48:288:99:491,0,3116 chrIX 439417 . G A 233.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=283;Dels=0.00;FS=23.543;HaplotypeScore=268.1093;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=8;MQRankSum=1.469;QD=0.82;ReadPosRankSum=-1.691;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:239,43:283:99:263,0,3370 chrIX 439449 . C A 2908 filter AC=2;AF=1.00;AN=2;DP=244;Dels=0.00;FS=0.000;HaplotypeScore=20.3943;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=7;QD=11.92;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,238:244:99:2941,327,0 chrIX 439463 . T G 324.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.557;DP=282;Dels=0.00;FS=81.555;HaplotypeScore=31.1239;MLEAC=1;MLEAF=0.500;MQ=25.49;MQ0=6;MQRankSum=-0.280;QD=1.15;ReadPosRankSum=0.010;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,80:282:99:354,0,2723 chrIX 439465 . A G 272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.931;DP=282;Dels=0.00;FS=97.137;HaplotypeScore=36.4343;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=7;MQRankSum=-0.374;QD=0.96;ReadPosRankSum=0.610;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:204,78:282:99:302,0,2685 chrIX 439472 . A G 127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;DP=292;Dels=0.00;FS=83.056;HaplotypeScore=100.5433;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=7;MQRankSum=-0.208;QD=0.43;ReadPosRankSum=0.110;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,67:292:99:157,0,2785 chrIX 439492 . G T 719.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;DP=334;Dels=0.00;FS=0.000;HaplotypeScore=282.8959;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=7;MQRankSum=3.106;QD=2.15;ReadPosRankSum=1.988;SB=-4.700e+02 GT:AD:DP:GQ:PL 0/1:192,140:333:99:749,0,1625 chrIX 439506 . G A 886.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.861;DP=372;Dels=0.00;FS=8.853;HaplotypeScore=138.2582;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=8;MQRankSum=-0.730;QD=2.38;ReadPosRankSum=0.370;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:247,118:371:99:916,0,2198 chrIX 439515 . G A 232.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;DP=405;Dels=0.00;FS=12.125;HaplotypeScore=159.4413;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=10;MQRankSum=-0.976;QD=0.57;ReadPosRankSum=-5.718;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:307,95:404:99:262,0,3054 chrIX 439543 . C A 812.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.890;DP=419;Dels=0.00;FS=41.009;HaplotypeScore=127.7226;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=13;MQRankSum=2.660;QD=1.94;ReadPosRankSum=1.211;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:318,100:419:99:842,0,3172 chrIX 439565 . C G 308.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DP=376;Dels=0.00;FS=83.221;HaplotypeScore=281.3379;MLEAC=1;MLEAF=0.500;MQ=26.68;MQ0=14;MQRankSum=-3.421;QD=0.82;ReadPosRankSum=6.155;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:303,70:376:99:338,0,3499 chrIX 439567 . A G 365.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.131;DP=378;Dels=0.00;FS=10.603;HaplotypeScore=305.0457;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=14;MQRankSum=2.489;QD=0.97;ReadPosRankSum=4.552;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:310,68:378:99:395,0,3547 chrIX 439574 . A G 455.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;DP=359;Dels=0.00;FS=1.645;HaplotypeScore=410.2191;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=13;MQRankSum=-1.863;QD=1.27;ReadPosRankSum=-3.612;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:277,82:359:99:485,0,3024 chrIX 439575 . G A 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;DP=341;Dels=0.00;FS=115.235;HaplotypeScore=431.8306;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=12;MQRankSum=3.598;QD=0.51;ReadPosRankSum=0.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:282,59:341:99:205,0,3447 chrIX 439583 . C G 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DP=306;Dels=0.00;FS=6.268;HaplotypeScore=203.3986;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=12;MQRankSum=-1.994;QD=0.50;ReadPosRankSum=2.106;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:252,44:306:99:184,0,3175 chrIX 439600 . G A 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=231;Dels=0.00;FS=52.564;HaplotypeScore=98.7621;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=12;MQRankSum=2.763;QD=1.58;ReadPosRankSum=2.897;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:168,63:231:99:396,0,2058 chrIX 439608 . T C 711.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;DP=202;Dels=0.00;FS=18.645;HaplotypeScore=111.3555;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=12;MQRankSum=-2.280;QD=3.52;ReadPosRankSum=-3.246;SB=-3.780e+02 GT:AD:DP:GQ:PL 0/1:124,73:202:99:741,0,1334 chrIX 439620 . C T 635.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;DP=145;Dels=0.00;FS=8.458;HaplotypeScore=71.8364;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=4;MQRankSum=4.067;QD=4.38;ReadPosRankSum=-0.468;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:83,60:145:99:665,0,908 chrIX 439626 . G A 940.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;DP=136;Dels=0.00;FS=4.045;HaplotypeScore=62.8409;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=4;MQRankSum=0.369;QD=6.91;ReadPosRankSum=-1.452;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:46,90:136:99:970,0,544 chrIX 439629 . T G 373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902;DP=139;Dels=0.00;FS=21.803;HaplotypeScore=62.6170;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=4;MQRankSum=4.737;QD=2.68;ReadPosRankSum=-1.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,34:139:99:403,0,1139 chrIX 439663 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=114;Dels=0.02;FS=6.844;HaplotypeScore=55.5164;MLEAC=1;MLEAF=0.500;MQ=24.95;MQ0=4;MQRankSum=2.953;QD=0.41;ReadPosRankSum=0.774;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,16:112:77:77,0,963 chrIX 439665 . A G 70.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;DP=113;Dels=0.02;FS=6.803;HaplotypeScore=75.1343;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=4;MQRankSum=2.882;QD=0.62;ReadPosRankSum=0.589;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,15:111:99:100,0,993 chrIX 439674 . T G 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;DP=115;Dels=0.00;FS=6.856;HaplotypeScore=120.2829;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=2;MQRankSum=2.266;QD=1.34;ReadPosRankSum=2.313;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,20:115:99:184,0,966 chrIX 439675 . G A 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=115;Dels=0.00;FS=6.894;HaplotypeScore=123.1324;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=2;MQRankSum=2.390;QD=1.21;ReadPosRankSum=1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,25:115:99:169,0,877 chrIX 439685 . C A 1004.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.657;DP=102;Dels=0.05;FS=0.000;HaplotypeScore=94.3601;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=1;MQRankSum=-0.054;QD=9.85;ReadPosRankSum=0.174;SB=-1.225e+02 GT:AD:DP:GQ:PL 1/1:10,87:97:2:1034,2,0 chrIX 439692 . A G 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;DP=106;Dels=0.00;FS=2.295;HaplotypeScore=99.8467;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=1;MQRankSum=2.658;QD=0.20;ReadPosRankSum=1.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,17:106:51:51,0,865 chrIX 439700 . T G 934 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=107.1227;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=10.38;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,80:90:99:967,111,0 chrIX 439712 . T C 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=114.1852;MLEAC=1;MLEAF=0.500;MQ=27.00;MQ0=0;MQRankSum=2.252;QD=0.77;ReadPosRankSum=-0.571;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,25:106:99:112,0,741 chrIX 439728 . A G 1092 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=119;Dels=0.00;FS=13.766;HaplotypeScore=33.3494;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;MQRankSum=-0.510;QD=9.18;ReadPosRankSum=-0.377;SB=-6.525e-03 GT:AD:DP:GQ:PL 1/1:5,114:119:62:1125,62,0 chrIX 439739 . A G 1074.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610;DP=130;Dels=0.00;FS=8.835;HaplotypeScore=105.7485;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=0;MQRankSum=0.097;QD=8.26;ReadPosRankSum=0.649;SB=-1.421e-03 GT:AD:DP:GQ:PL 0/1:17,113:130:46:1104,0,46 chrIX 439745 . G A,T 374.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.193;DP=129;Dels=0.00;FS=3.096;HaplotypeScore=78.4480;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.80;MQ0=0;MQRankSum=-0.896;QD=2.90;ReadPosRankSum=0.432;SB=5.45 GT:AD:DP:GQ:PL 1/2:25,62,26:129:75:434,75,254,160,0,350 chrIX 439746 . G A 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.971;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=103.0226;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=0;MQRankSum=2.196;QD=1.47;ReadPosRankSum=0.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,26:131:99:222,0,789 chrIX 439750 . A T 1291 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=21.004;HaplotypeScore=81.3740;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;MQRankSum=-1.732;QD=10.25;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:1324,153,0 chrIX 439751 . A C 161.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=82.2407;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=0.755;QD=1.26;ReadPosRankSum=-0.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,26:128:99:191,0,829 chrIX 439771 . G T 192.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.236;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=216.1911;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=1.081;QD=1.56;ReadPosRankSum=1.513;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,23:123:99:222,0,689 chrIX 439772 . A G 403.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=224.6359;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=0;MQRankSum=0.884;QD=3.25;ReadPosRankSum=1.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,53:124:99:433,0,624 chrIX 439775 . G A 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=225.5279;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=0;MQRankSum=1.184;QD=0.39;ReadPosRankSum=-1.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,21:122:77:77,0,880 chrIX 439781 . A T 780 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.949;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=293.9099;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;MQRankSum=-0.551;QD=7.65;ReadPosRankSum=0.559;SB=3.00 GT:AD:DP:GQ:PL 1/1:27,73:100:47:813,47,0 chrIX 439801 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=238.6593;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=0;MQRankSum=1.377;QD=0.09;ReadPosRankSum=0.867;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:93,13:110:40:40,0,873 chrIX 439805 . T G 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=300.9129;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=0;MQRankSum=0.689;QD=0.91;ReadPosRankSum=1.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,27:106:99:126,0,793 chrIX 439886 . T G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=25.8420;MLEAC=1;MLEAF=0.500;MQ=24.05;MQ0=1;MQRankSum=-0.500;QD=1.63;ReadPosRankSum=0.779;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,17:70:99:144,0,516 chrM 13967 . T A 1338 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4596;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1371,168,0 chrM 13987 . G T 87.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=7.93;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:120,15,0 chrM 16432 . C A 255 filter AC=2;AF=1.00;AN=2;DP=520;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=0.49;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,520:520:36:288,36,0 chrM 16861 . T C 14227.01 filter AC=2;AF=1.00;AN=2;DP=781;Dels=0.00;FS=0.000;HaplotypeScore=43.8955;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.22;SB=-4.261e+03 GT:AD:DP:GQ:PL 1/1:0,775:781:99:14227,1692,0 chrM 17675 . T C 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=11.027;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.368;QD=19.23;ReadPosRankSum=1.641;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,37:39:93:783,93,0 chrM 18979 . A T 6863.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=415;Dels=0.00;FS=0.000;HaplotypeScore=6.9081;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;MQRankSum=-2.838;QD=16.54;ReadPosRankSum=2.983;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:3,412:415:99:6863,893,0 chrM 18982 . T A 8177.01 filter AC=2;AF=1.00;AN=2;DP=389;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=21.02;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,389:389:99:8177,903,0 chrM 18992 . C T 441 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=21.00;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:57:474,57,0 chrM 18994 . A T 131.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=9.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;MQRankSum=-0.747;QD=16.38;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,7:8:21:164,21,0 chrM 20934 . T G 13227.01 filter AC=2;AF=1.00;AN=2;DP=670;DS;Dels=0.00;FS=0.000;HaplotypeScore=43.6358;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=19.74;SB=-4.579e+03 GT:AD:DP:GQ:PL 1/1:0,668:670:99:13227,1622,0 chrM 20960 . C T 9072.01 filter AC=2;AF=1.00;AN=2;DP=547;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.7249;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=16.59;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,547:547:99:9072,1177,0 chrM 20987 . A T 229 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=15;DS;Dels=0.00;FS=6.990;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.273;QD=15.27;ReadPosRankSum=1.042;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:1,14:15:30:262,30,0 chrM 20988 . A C 162.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=12;DS;Dels=0.00;FS=18.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;MQRankSum=-2.256;QD=13.50;ReadPosRankSum=1.396;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:2,10:12:24:195,24,0 chrM 22000 . T A 639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;MQRankSum=1.233;QD=5.11;ReadPosRankSum=1.677;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:81:672,81,0 chrM 22021 . T C 3314.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=235;Dels=0.00;FS=9.506;HaplotypeScore=4.3463;MLEAC=2;MLEAF=1.00;MQ=35.82;MQ0=0;MQRankSum=-2.387;QD=14.10;ReadPosRankSum=2.356;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:2,233:235:99:3314,413,0 chrM 22604 . G A 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.39;SB=-2.676e+01 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 chrM 25344 . T A 187.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=14.39;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:220,24,0 chrM 26386 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3020;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.25;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1301,147,0 chrM 26539 . C T 496 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.6041;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=15.50;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:57:529,57,0 chrM 26570 . A G 398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.595;QD=15.92;ReadPosRankSum=1.595;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:54:431,54,0 chrM 26571 . A C 451 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.79;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:54:484,54,0 chrM 26581 . T C 352 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.00;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:45:385,45,0 chrM 26709 . A T 198.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.735;QD=11.00;ReadPosRankSum=1.542;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:24:231,24,0 chrM 28837 . C T 4215.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=6.6020;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=25.70;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,164:164:99:4215,453,0 chrM 29015 . T A 6705.01 filter AC=2;AF=1.00;AN=2;DP=373;Dels=0.00;FS=0.000;HaplotypeScore=5.5142;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=17.98;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,372:373:99:6705,735,0 chrM 29017 . C T 5404.01 filter AC=2;AF=1.00;AN=2;DP=380;Dels=0.00;FS=0.000;HaplotypeScore=5.5142;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=14.22;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,370:380:99:5404,716,0 chrM 29170 . C T 1516 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1607;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=16.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1549,171,0 chrM 29179 . G T 1801 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=17.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1834,210,0 chrM 29200 . C T 2268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2301,249,0 chrM 29203 . T C 2152 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2185,258,0 chrM 29206 . G A 2010 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2043,228,0 chrM 29207 . G T 1988 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2021,231,0 chrM 29208 . G C 2016 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2049,231,0 chrM 29209 . A T 2065 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2098,231,0 chrM 29215 . C T 1897 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1930,231,0 chrM 29218 . G A 1775 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1808,224,0 chrM 29219 . G C 1721 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1754,221,0 chrM 29220 . C T 1717 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1750,221,0 chrM 29224 . T C 2057 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2090,231,0 chrM 29239 . T C 1859 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1892,207,0 chrM 29249 . G A 1243 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1276,153,0 chrM 29252 . G T 1138 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1171,126,0 chrM 36563 . G A 7156.01 filter AC=2;AF=1.00;AN=2;DP=422;Dels=0.00;FS=0.000;HaplotypeScore=4.1607;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=16.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,417:422:99:7156,786,0 chrM 36588 . A G 11139.01 filter AC=2;AF=1.00;AN=2;DP=589;Dels=0.00;FS=0.000;HaplotypeScore=39.1668;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,579:589:99:11139,1363,0 chrM 37968 . A G 250 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:33:283,33,0 chrM 41630 . A T 728 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:84:761,84,0 chrM 41832 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.56;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:330,36,0 chrM 44508 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=11.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:55,6,0 chrM 60526 . G T 2932 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=13.3863;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;MQRankSum=-1.679;QD=22.05;ReadPosRankSum=-1.439;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2965,362,0 chrM 60527 . A C 2610 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=13.3863;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2643,320,0 chrM 60530 . C T 2508 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9864;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=19.90;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2541,308,0 chrM 60577 . A T 217.01 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=35.3959;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=4.09;SB=-8.202e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:27:250,27,0 chrM 60578 . A T 242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=33.4171;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;MQRankSum=0.173;QD=4.03;ReadPosRankSum=1.039;SB=-5.602e+01 GT:AD:DP:GQ:PL 1/1:1,59:60:30:275,30,0 chrM 61881 . G A 584 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;QD=7.68;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:75:617,75,0 chrM 61903 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=14.81;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1307,150,0 chrM 74051 . T C 10621.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.879;DP=537;Dels=0.00;FS=19.159;HaplotypeScore=23.6307;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=3.033;QD=19.78;ReadPosRankSum=6.117;SB=-4.227e+03 GT:AD:DP:GQ:PL 1/1:13,523:537:99:10621,1223,0 chrM 74225 . T A 12889.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=561;DS;Dels=0.00;FS=0.000;HaplotypeScore=12.3038;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=0.256;QD=22.98;ReadPosRankSum=1.720;SB=-5.529e+03 GT:AD:DP:GQ:PL 1/1:1,560:561:99:12889,1511,0 chrM 74327 . T C 9610.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=514;Dels=0.00;FS=0.000;HaplotypeScore=22.6531;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.941;QD=18.70;ReadPosRankSum=2.258;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:2,509:514:99:9610,1148,0 chrM 74384 . T A 11767.01 filter AC=2;AF=1.00;AN=2;DP=556;Dels=0.00;FS=0.000;HaplotypeScore=16.8122;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=21.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,556:556:99:11767,1285,0 chrM 74405 . C T 10747.01 filter AC=2;AF=1.00;AN=2;DP=527;Dels=0.00;FS=0.000;HaplotypeScore=7.2229;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,517:527:99:10747,1182,0 chrM 74415 . G C 8818.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=504;Dels=0.00;FS=0.000;HaplotypeScore=3.3976;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=17.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,504:504:99:8818,1075,0 chrM 74416 . C A 10356.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=504;Dels=0.00;FS=0.000;HaplotypeScore=2.5655;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=20.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,504:504:99:10356,1131,0 chrM 74420 . T C 10293.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=573;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=0;QD=17.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,573:573:99:10293,1173,0 chrM 74423 . T A 10736.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=631;Dels=0.00;FS=0.000;HaplotypeScore=572.8872;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=17.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,631:631:99:10736,1159,0 chrM 74441 . T A 221.45 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.017;DP=777;Dels=0.00;FS=0.000;HaplotypeScore=581.7996;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;MQRankSum=-1.312;QD=0.29;ReadPosRankSum=-0.659;SB=-1.465e+00 GT:AD:DP:GQ:PL 1/1:2,774:777:7:253,7,0 chrM 74447 . A C 9399.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=817;Dels=0.00;FS=0.000;HaplotypeScore=10.4769;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=11.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,817:817:99:9399,1141,0 chrM 74450 . T C 9230.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=829;Dels=0.00;FS=0.000;HaplotypeScore=8.4944;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=11.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,829:829:99:9230,1132,0 chrM 74462 . G A 9406.01 filter AC=2;AF=1.00;AN=2;DP=809;Dels=0.00;FS=0.000;HaplotypeScore=3.7123;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=11.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,809:809:99:9406,1006,0 chrM 74465 . C T 6721.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576;DP=778;Dels=0.00;FS=0.000;HaplotypeScore=2.8491;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=1.541;QD=8.64;ReadPosRankSum=-0.356;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,777:778:99:6721,904,0 chrM 74521 . T A 1354 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=5.8091;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=10.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1387,147,0 chrM 74522 . T A 1356 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.641;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8091;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;MQRankSum=-1.732;QD=10.68;ReadPosRankSum=1.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1389,147,0 chrM 74524 . C T 1361 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.8091;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;QD=10.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1394,147,0 chrM 74527 . A G 1357 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.7825;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=0;MQRankSum=-1.732;QD=10.69;ReadPosRankSum=1.705;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:1390,147,0 chrM 74536 . A G 638 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.424;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.051;QD=8.99;ReadPosRankSum=5.424;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:12,59:71:72:671,72,0 chrM 74545 . T A 196.01 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.53;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,30:30:27:229,27,0 chrM 79281 . T A 16210.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.148;DP=830;Dels=0.00;FS=0.000;HaplotypeScore=71.9935;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=-1.008;QD=19.53;ReadPosRankSum=5.361;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:10,820:830:99:16210,2132,0 chrM 79590 . C T 18022.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=46.1684;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.02;SB=-7.344e+03 GT:AD:DP:GQ:PL 1/1:0,1000:1000:99:18022,2222,0 chrM 80016 . A T 10110.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=691;Dels=0.00;FS=0.000;HaplotypeScore=24.6118;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.236;QD=14.63;ReadPosRankSum=1.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,689:691:99:10110,1372,0 chrV 87 . T C 99.26 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=1.06;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,93:94:15:132,15,0 chrV 106 . T C 127.13 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=0;QD=1.72;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,74:74:18:160,18,0 chrV 110 . C G 120.13 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.41;MQ0=0;QD=1.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,69:69:18:153,18,0 chrV 128 . T C 99.26 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=0;QD=1.60;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,62:62:15:132,15,0 chrV 159 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=24.7272;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=0;QD=1.04;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,20:20:6:52,6,0 chrV 600 . G A 50.97 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.96;MQ0=10;QD=1.59;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,31:32:9:83,9,0 chrV 615 . G A 72.51 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.62;MQ0=40;QD=1.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:71:12:105,12,0 chrV 780 . T C 2236 filter AC=2;AF=1.00;AN=2;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=27.6366;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=68;QD=7.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,282:289:99:2269,255,0 chrV 847 . T A 402 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=7;QD=9.14;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:2,42:44:48:435,48,0 chrV 1083 . G A 103.13 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.47;MQ0=24;QD=2.34;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,44:44:18:136,18,0 chrV 1125 . C T 433 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=3;QD=8.66;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:54:466,54,0 chrV 1133 . T G 437 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.988;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=3;MQRankSum=2.131;QD=6.72;ReadPosRankSum=3.988;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:6,59:65:57:470,57,0 chrV 1215 . T C 206.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=0.577;QD=3.27;ReadPosRankSum=1.677;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,62:63:27:239,27,0 chrV 1218 . G T 240 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=4.00;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,60:60:30:273,30,0 chrV 1584 . G A 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9664;MLEAC=2;MLEAF=1.00;MQ=13.09;MQ0=14;MQRankSum=-1.133;QD=0.64;ReadPosRankSum=-0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:9:71,9,0 chrV 1738 . A G 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.26;MQ0=1;QD=0.16;SB=-5.426e+01 GT:AD:DP:GQ:PL 1/1:0,161:161:6:57,6,0 chrV 1755 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.008;DP=153;Dels=0.00;FS=41.141;HaplotypeScore=46.9010;MLEAC=2;MLEAF=1.00;MQ=12.14;MQ0=4;MQRankSum=-2.432;QD=0.16;ReadPosRankSum=2.167;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:125,28:153:6:55,6,0 chrV 1779 . A C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;DP=132;Dels=0.00;FS=79.492;HaplotypeScore=6.9742;MLEAC=1;MLEAF=0.500;MQ=9.86;MQ0=52;MQRankSum=-2.326;QD=0.39;ReadPosRankSum=-4.855;SB=-6.952e-03 GT:AD:DP:GQ:PL 0/1:45,83:132:37:82,0,37 chrV 1815 . C T 678 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=458;Dels=0.00;FS=30.327;HaplotypeScore=6.0225;MLEAC=2;MLEAF=1.00;MQ=10.72;MQ0=217;MQRankSum=0.118;QD=1.48;ReadPosRankSum=4.047;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,433:458:81:711,81,0 chrV 1819 . T C 828 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.882;DP=522;Dels=0.00;FS=51.925;HaplotypeScore=7.6906;MLEAC=2;MLEAF=1.00;MQ=10.87;MQ0=265;MQRankSum=3.313;QD=1.59;ReadPosRankSum=5.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,499:522:99:861,99,0 chrV 1891 . C T 850 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;DP=449;Dels=0.00;FS=219.561;HaplotypeScore=35.6178;MLEAC=2;MLEAF=1.00;MQ=13.50;MQ0=255;MQRankSum=6.025;QD=1.89;ReadPosRankSum=-7.400;SB=3.79 GT:AD:DP:GQ:PL 1/1:148,299:449:36:883,36,0 chrV 1905 . G A 575.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;DP=287;Dels=0.00;FS=170.666;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=175;MQRankSum=6.407;QD=2.00;ReadPosRankSum=-4.916;SB=-1.122e+00 GT:AD:DP:GQ:PL 1/1:145,142:287:1:604,1,0 chrV 1908 . G A 556.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.940;DP=253;Dels=0.00;FS=160.243;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.66;MQ0=153;MQRankSum=6.544;QD=2.20;ReadPosRankSum=-4.492;SB=-1.125e+00 GT:AD:DP:GQ:PL 1/1:139,114:253:1:585,1,0 chrV 1923 . A T 50.97 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.13;MQ0=57;QD=0.70;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,73:73:9:83,9,0 chrV 1927 . T C 50.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.02;MQ0=35;QD=1.06;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:9:83,9,0 chrV 1995 . C A 106.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=11.81;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:15:139,15,0 chrV 1999 . T C 102.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=6.02;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:15:135,15,0 chrV 2014 . G A 441 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=0;QD=10.26;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:51:474,51,0 chrV 2016 . A G 426 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=0;QD=9.91;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:48:459,48,0 chrV 2019 . A G 416 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=0;QD=8.00;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:51:449,51,0 chrV 2029 . A G 746 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=5;QD=9.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:84:779,84,0 chrV 2031 . C A 727 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=5;QD=8.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:84:760,84,0 chrV 2040 . A C 928 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=17;QD=9.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:961,105,0 chrV 2044 . G A 971 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=25;QD=8.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:1004,108,0 chrV 6259 . A C 433 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;QD=8.17;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:57:466,57,0 chrV 6266 . A C 194 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=0;QD=3.88;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:30:227,30,0 chrV 6271 . T C 170.01 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=0;QD=4.25;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:27:203,27,0 chrV 6273 . C T 170.01 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=0;QD=4.25;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:27:203,27,0 chrV 6303 . G A 574 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.0234;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;QD=11.04;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:607,66,0 chrV 6375 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DP=57;Dels=0.00;FS=44.205;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=35.14;MQ0=0;MQRankSum=-0.047;QD=0.39;ReadPosRankSum=-3.046;SB=0.128 GT:AD:DP:GQ:PL 0/1:53,4:57:52:52,0,303 chrV 6380 . A T 119.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;DP=96;Dels=0.00;FS=28.439;HaplotypeScore=11.1729;MLEAC=1;MLEAF=0.500;MQ=32.60;MQ0=0;MQRankSum=-0.635;QD=1.24;ReadPosRankSum=4.433;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:56,40:96:99:149,0,185 chrV 6611 . G C 2982 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.09;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3015,342,0 chrV 6770 . T C 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;DP=93;Dels=0.00;FS=14.923;HaplotypeScore=8.8347;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=3;MQRankSum=2.105;QD=18.99;ReadPosRankSum=2.457;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:7,86:93:99:1799,179,0 chrV 6807 . G T 1328 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=14.28;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1361,150,0 chrV 6808 . T A 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=89;Dels=0.00;FS=5.263;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=1.691;QD=14.24;ReadPosRankSum=1.608;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1300,141,0 chrV 7205 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.44;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1954,210,0 chrV 7587 . G C 2281 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.52;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2314,261,0 chrV 7660 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.78;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2007,222,0 chrV 8258 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1337,150,0 chrV 8611 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.12;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1333,147,0 chrV 9216 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.99;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2594,279,0 chrV 9217 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.60;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2588,282,0 chrV 9542 . T C 2430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=124;Dels=0.00;FS=12.445;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.028;QD=19.60;ReadPosRankSum=3.705;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:5,107:124:99:2463,276,0 chrV 9596 . G A 2834 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.68;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,137:144:99:2867,330,0 chrV 9859 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.48;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1902,207,0 chrV 10058 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.62;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1188,132,0 chrV 10217 . A C 1566 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.70;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1599,180,0 chrV 10389 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.72;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1315,141,0 chrV 10432 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.58;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1749,198,0 chrV 10476 . T C 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7412;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.479;QD=21.70;ReadPosRankSum=1.690;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1812,207,0 chrV 10492 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.49;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1508,168,0 chrV 10561 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.31;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1388,159,0 chrV 10568 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.07;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1518,162,0 chrV 10621 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.71;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1255,138,0 chrV 10640 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.50;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1258,138,0 chrV 10700 . T A 1300 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.40;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1333,150,0 chrV 10731 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.21;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1433,156,0 chrV 10979 . A G 1504 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.34;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1537,171,0 chrV 11032 . T C 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.610;QD=19.32;ReadPosRankSum=-0.561;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1405,162,0 chrV 11195 . T G 2193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.864;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.222;QD=22.84;ReadPosRankSum=1.331;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2226,249,0 chrV 11331 . A T 2155 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.55;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2188,234,0 chrV 11349 . T C 1882 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.46;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1915,216,0 chrV 11439 . C G 1943 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.35;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1976,222,0 chrV 11548 . A G 2411 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.26;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2444,282,0 chrV 11716 . G T 1872 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.29;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1905,207,0 chrV 11744 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.63;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1828,198,0 chrV 11756 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.81;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1688,186,0 chrV 12024 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.61;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1970,216,0 chrV 12036 . C A 1595 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.33;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1628,177,0 chrV 12071 . A C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.9634;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.362;QD=16.99;ReadPosRankSum=1.694;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1613,180,0 chrV 12413 . A T 2228 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.84;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2261,249,0 chrV 12937 . C T 2269 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.25;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2302,252,0 chrV 14425 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.33;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1395,150,0 chrV 14438 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.24;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1490,162,0 chrV 14482 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.55;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1220,138,0 chrV 14512 . C G 1097 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.95;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1130,126,0 chrV 14785 . T A 566 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=13.48;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:599,66,0 chrV 14798 . C T 733 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=16.66;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:766,84,0 chrV 14808 . A T 768 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=17.07;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:801,87,0 chrV 14875 . C T 919 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=82.1532;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=19.15;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:952,105,0 chrV 14921 . T A 631 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.97;MQ0=0;QD=14.02;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:664,72,0 chrV 14967 . T C 618 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=12.87;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:651,72,0 chrV 15022 . A C 1346 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.69;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1379,156,0 chrV 15054 . A T 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.386;QD=20.74;ReadPosRankSum=1.633;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1485,162,0 chrV 15198 . C G 1560 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=19.02;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1593,180,0 chrV 15479 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.51;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1347,150,0 chrV 15558 . A G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.397;QD=18.87;ReadPosRankSum=1.696;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1863,216,0 chrV 15608 . C T 2466 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.72;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2499,267,0 chrV 15698 . T A 2414 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.77;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2447,267,0 chrV 15966 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.66;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1507,162,0 chrV 17065 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.8295;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.98;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1671,186,0 chrV 17311 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.52;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1770,189,0 chrV 17320 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.28;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1519,165,0 chrV 17400 . T A 1409 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.0498;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.06;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1442,162,0 chrV 17824 . A G 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.490;QD=17.55;ReadPosRankSum=1.667;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:963,111,0 chrV 17918 . T A 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.726;DP=63;Dels=0.00;FS=6.408;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.959;QD=15.90;ReadPosRankSum=2.280;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1035,114,0 chrV 17994 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=27.62;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2464,258,0 chrV 18035 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.47;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1648,180,0 chrV 18174 . A T 984 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=17.26;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1017,114,0 chrV 18178 . A C 1010 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=17.41;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1043,117,0 chrV 18182 . T C 983 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=-0.657;QD=16.66;ReadPosRankSum=1.673;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1016,114,0 chrV 18193 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-0.704;QD=15.02;ReadPosRankSum=1.678;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1009,114,0 chrV 18214 . A T 873 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=13.03;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:906,105,0 chrV 18224 . C T 855 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=12.95;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:888,96,0 chrV 18229 . C T 869 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=12.59;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:96:902,96,0 chrV 18232 . G A 993 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=13.24;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1026,111,0 chrV 18285 . A T 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.948;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-0.117;QD=18.63;ReadPosRankSum=2.372;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1803,198,0 chrV 18668 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.24;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2093,243,0 chrV 18698 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.80;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1954,213,0 chrV 18721 . T G 1865 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.84;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1898,213,0 chrV 19051 . C A 1762 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.49;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1795,195,0 chrV 19467 . C T 641.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DP=128;Dels=0.00;FS=5.907;HaplotypeScore=11.2966;MLEAC=1;MLEAF=0.500;MQ=49.21;MQ0=0;MQRankSum=-7.837;QD=5.01;ReadPosRankSum=-0.293;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:67,59:128:99:671,0,977 chrV 19475 . T C 740.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;DP=134;Dels=0.00;FS=5.709;HaplotypeScore=8.7326;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=0;MQRankSum=-6.437;QD=5.52;ReadPosRankSum=2.130;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:78,56:134:99:770,0,990 chrV 19654 . A C 1850.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.878;DP=206;Dels=0.00;FS=15.348;HaplotypeScore=9.9303;MLEAC=1;MLEAF=0.500;MQ=38.97;MQ0=21;MQRankSum=-5.954;QD=8.98;ReadPosRankSum=3.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,121:206:99:1880,0,1490 chrV 19717 . C T 153.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;DP=182;Dels=0.00;FS=10.557;HaplotypeScore=10.6481;MLEAC=1;MLEAF=0.500;MQ=36.54;MQ0=28;MQRankSum=-3.314;QD=0.84;ReadPosRankSum=-2.114;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:137,45:182:99:183,0,2382 chrV 19786 . C T 601.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.440;DP=180;Dels=0.00;FS=58.802;HaplotypeScore=17.0231;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=19;MQRankSum=-7.808;QD=3.34;ReadPosRankSum=-0.264;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,58:180:99:631,0,2201 chrV 20770 . T C 1180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.023;DP=348;Dels=0.00;FS=18.631;HaplotypeScore=51.3214;MLEAC=1;MLEAF=0.500;MQ=43.34;MQ0=27;MQRankSum=-4.512;QD=3.39;ReadPosRankSum=1.464;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:234,113:348:99:1210,0,3959 chrV 20807 . G A 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.376;DP=326;Dels=0.00;FS=24.554;HaplotypeScore=27.2054;MLEAC=1;MLEAF=0.500;MQ=40.87;MQ0=43;MQRankSum=-3.572;QD=0.24;ReadPosRankSum=-0.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:280,44:326:99:107,0,4446 chrV 20824 . G A 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=279;Dels=0.00;FS=13.639;HaplotypeScore=17.0586;MLEAC=1;MLEAF=0.500;MQ=41.17;MQ0=43;MQRankSum=-6.623;QD=1.02;ReadPosRankSum=-0.018;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,90:279:99:314,0,3548 chrV 20858 . C T 186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=193;Dels=0.00;FS=44.996;HaplotypeScore=9.7374;MLEAC=1;MLEAF=0.500;MQ=36.14;MQ0=47;MQRankSum=-3.657;QD=0.96;ReadPosRankSum=-0.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:130,63:193:99:216,0,2225 chrV 20912 . C G 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.895;DP=163;Dels=0.00;FS=15.937;HaplotypeScore=4.0706;MLEAC=1;MLEAF=0.500;MQ=31.68;MQ0=48;MQRankSum=0.427;QD=1.27;ReadPosRankSum=-0.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,39:163:99:237,0,1524 chrV 20941 . C T 436.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.400;DP=184;Dels=0.00;FS=0.795;HaplotypeScore=6.5307;MLEAC=1;MLEAF=0.500;MQ=33.05;MQ0=44;MQRankSum=-4.601;QD=2.37;ReadPosRankSum=2.757;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:99,83:184:99:466,0,1566 chrV 20955 . A G 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.305;DP=212;Dels=0.00;FS=0.969;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=50;MQRankSum=-1.328;QD=0.50;ReadPosRankSum=0.595;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:164,47:212:99:135,0,2290 chrV 21110 . A T 821.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DP=235;Dels=0.00;FS=36.717;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=47.31;MQ0=20;MQRankSum=-10.752;QD=3.49;ReadPosRankSum=-3.272;SB=-3.060e+02 GT:AD:DP:GQ:PL 0/1:150,85:235:99:851,0,2749 chrV 21272 . G A 379.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;DP=110;Dels=0.00;FS=1.945;HaplotypeScore=5.9283;MLEAC=1;MLEAF=0.500;MQ=52.20;MQ0=5;MQRankSum=-1.352;QD=3.45;ReadPosRankSum=1.261;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:75,35:110:99:409,0,1247 chrV 21290 . C A 307.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;DP=93;Dels=0.01;FS=5.304;HaplotypeScore=20.6475;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=3;MQRankSum=-2.046;QD=3.30;ReadPosRankSum=1.962;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:60,25:92:99:337,0,914 chrV 21343 . A C 318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=111;Dels=0.00;FS=3.004;HaplotypeScore=47.6727;MLEAC=1;MLEAF=0.500;MQ=49.50;MQ0=5;MQRankSum=0.149;QD=2.86;ReadPosRankSum=2.390;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:79,31:111:99:348,0,725 chrV 21381 . A G 392.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.009;DP=133;Dels=0.00;FS=35.164;HaplotypeScore=15.0221;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=1;MQRankSum=-4.674;QD=2.95;ReadPosRankSum=-0.891;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:79,52:133:99:422,0,1528 chrV 21406 . C T 640.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;DP=176;Dels=0.00;FS=59.589;HaplotypeScore=16.9184;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-4.574;QD=3.64;ReadPosRankSum=-1.621;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:112,64:176:99:670,0,2060 chrV 21440 . T G 535.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;DP=172;Dels=0.00;FS=27.314;HaplotypeScore=34.5673;MLEAC=1;MLEAF=0.500;MQ=49.07;MQ0=3;MQRankSum=-7.438;QD=3.11;ReadPosRankSum=3.064;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:111,61:172:99:565,0,2066 chrV 21467 . A G 315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=171;Dels=0.00;FS=31.834;HaplotypeScore=19.8313;MLEAC=1;MLEAF=0.500;MQ=48.00;MQ0=9;MQRankSum=-4.680;QD=1.84;ReadPosRankSum=-1.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,46:171:99:345,0,2235 chrV 21489 . C A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.132;DP=159;Dels=0.00;FS=23.121;HaplotypeScore=9.6649;MLEAC=1;MLEAF=0.500;MQ=48.56;MQ0=13;MQRankSum=-4.286;QD=0.07;ReadPosRankSum=-3.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,28:159:41:41,0,2024 chrV 21547 . T C 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770;DP=179;Dels=0.00;FS=20.506;HaplotypeScore=24.3507;MLEAC=1;MLEAF=0.500;MQ=46.30;MQ0=24;MQRankSum=-10.450;QD=0.53;ReadPosRankSum=-1.095;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:95,84:179:99:124,0,2048 chrV 21552 . T A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=195;Dels=0.00;FS=56.923;HaplotypeScore=22.9244;MLEAC=1;MLEAF=0.500;MQ=46.72;MQ0=24;MQRankSum=-9.135;QD=0.27;ReadPosRankSum=0.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,56:195:82:82,0,2202 chrV 21558 . C T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.444;DP=198;Dels=0.00;FS=53.822;HaplotypeScore=16.2427;MLEAC=1;MLEAF=0.500;MQ=46.40;MQ0=24;MQRankSum=-9.063;QD=0.55;ReadPosRankSum=-0.448;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,60:198:99:139,0,2228 chrV 21603 . G C 366.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DP=209;Dels=0.00;FS=25.916;HaplotypeScore=11.1695;MLEAC=1;MLEAF=0.500;MQ=49.08;MQ0=9;MQRankSum=-4.484;QD=1.75;ReadPosRankSum=1.955;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,56:209:99:396,0,2373 chrV 21669 . G A 454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.224;DP=193;Dels=0.00;FS=46.607;HaplotypeScore=19.0555;MLEAC=1;MLEAF=0.500;MQ=48.60;MQ0=8;MQRankSum=-4.695;QD=2.35;ReadPosRankSum=2.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,44:193:99:484,0,2597 chrV 21705 . C T 604.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DP=212;Dels=0.00;FS=19.008;HaplotypeScore=24.4202;MLEAC=1;MLEAF=0.500;MQ=46.73;MQ0=11;MQRankSum=-5.039;QD=2.85;ReadPosRankSum=1.698;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:154,58:212:99:634,0,2864 chrV 21741 . A T 428.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DP=238;Dels=0.00;FS=41.324;HaplotypeScore=27.8915;MLEAC=1;MLEAF=0.500;MQ=44.92;MQ0=16;MQRankSum=-5.834;QD=1.80;ReadPosRankSum=-0.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:189,49:238:99:458,0,3133 chrV 21759 . G A 561.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.524;DP=240;Dels=0.00;FS=25.925;HaplotypeScore=24.8590;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=14;MQRankSum=-4.399;QD=2.34;ReadPosRankSum=-1.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:173,66:240:99:591,0,3035 chrV 21894 . G C 1581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;DP=290;Dels=0.00;FS=3.456;HaplotypeScore=11.4167;MLEAC=1;MLEAF=0.500;MQ=47.48;MQ0=27;MQRankSum=-3.845;QD=5.45;ReadPosRankSum=-0.436;SB=-8.880e+02 GT:AD:DP:GQ:PL 0/1:181,108:290:99:1611,0,2779 chrV 22020 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928;DP=235;Dels=0.00;FS=18.411;HaplotypeScore=21.9005;MLEAC=1;MLEAF=0.500;MQ=41.18;MQ0=19;MQRankSum=-3.218;QD=0.06;ReadPosRankSum=-1.779;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:192,41:235:44:44,0,2952 chrV 22143 . G A 812.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.853;DP=270;Dels=0.00;FS=2.359;HaplotypeScore=17.1334;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=7;MQRankSum=-7.884;QD=3.01;ReadPosRankSum=-0.870;SB=-4.740e+02 GT:AD:DP:GQ:PL 0/1:183,86:270:99:842,0,3234 chrV 22158 . G A 651.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.974;DP=250;Dels=0.00;FS=2.559;HaplotypeScore=13.9385;MLEAC=1;MLEAF=0.500;MQ=51.65;MQ0=6;MQRankSum=-9.257;QD=2.60;ReadPosRankSum=0.027;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:172,78:250:99:681,0,2792 chrV 22200 . A G 569.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;DP=252;Dels=0.00;FS=0.000;HaplotypeScore=16.2757;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=8;MQRankSum=-10.128;QD=2.26;ReadPosRankSum=-0.141;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:179,69:252:99:599,0,3008 chrV 22221 . G A 367.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.527;DP=234;Dels=0.00;FS=5.518;HaplotypeScore=18.9754;MLEAC=1;MLEAF=0.500;MQ=50.89;MQ0=6;MQRankSum=-7.885;QD=1.57;ReadPosRankSum=0.411;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:178,56:234:99:397,0,3106 chrV 22302 . T G 745 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.338;DP=118;Dels=0.00;FS=3.955;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=20.54;MQ0=29;MQRankSum=-1.095;QD=6.31;ReadPosRankSum=-0.020;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:71:778,71,0 chrV 22305 . A G 708 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=114;Dels=0.00;FS=2.904;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=30;MQRankSum=-2.421;QD=6.21;ReadPosRankSum=2.391;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,112:114:90:741,90,0 chrV 22341 . C T 1504 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3026;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=28;MQRankSum=0.775;QD=11.31;ReadPosRankSum=-1.435;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,132:133:99:1537,149,0 chrV 22542 . G C 1447.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DP=296;Dels=0.00;FS=8.214;HaplotypeScore=28.2079;MLEAC=1;MLEAF=0.500;MQ=45.07;MQ0=8;MQRankSum=-5.017;QD=4.89;ReadPosRankSum=1.352;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:197,96:296:99:1477,0,3624 chrV 22689 . A G 966.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.763;DP=206;Dels=0.00;FS=19.214;HaplotypeScore=8.0702;MLEAC=1;MLEAF=0.500;MQ=39.20;MQ0=9;MQRankSum=-3.630;QD=4.69;ReadPosRankSum=-0.230;SB=-5.690e+02 GT:AD:DP:GQ:PL 0/1:121,82:206:99:996,0,1680 chrV 22854 . A G 1114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.673;DP=239;Dels=0.00;FS=157.215;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=46.27;MQ0=12;MQRankSum=-11.841;QD=4.66;ReadPosRankSum=-0.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,117:239:99:1144,0,2341 chrV 22863 . G A 1259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DP=244;Dels=0.00;FS=193.527;HaplotypeScore=13.4092;MLEAC=1;MLEAF=0.500;MQ=45.67;MQ0=14;MQRankSum=-12.435;QD=5.16;ReadPosRankSum=0.867;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,122:244:99:1289,0,2202 chrV 22944 . A G 701.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.074;DP=208;Dels=0.00;FS=101.330;HaplotypeScore=20.2261;MLEAC=1;MLEAF=0.500;MQ=33.21;MQ0=13;MQRankSum=-6.315;QD=3.37;ReadPosRankSum=1.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,76:208:99:731,0,2173 chrV 22959 . G A 786.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.620;DP=228;Dels=0.00;FS=48.499;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=36.30;MQ0=11;MQRankSum=-4.229;QD=3.45;ReadPosRankSum=-0.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,84:228:99:816,0,2088 chrV 22962 . G A 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.892;DP=228;Dels=0.00;FS=43.145;HaplotypeScore=22.8717;MLEAC=1;MLEAF=0.500;MQ=37.21;MQ0=10;MQRankSum=-5.004;QD=3.36;ReadPosRankSum=0.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,80:228:99:796,0,2158 chrV 23019 . A T 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=204;Dels=0.00;FS=10.901;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=3;MQRankSum=-6.590;QD=1.97;ReadPosRankSum=-0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:146,58:204:99:432,0,2156 chrV 23031 . C G 361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=203;Dels=0.00;FS=9.373;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=3;MQRankSum=-6.248;QD=1.78;ReadPosRankSum=-1.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,57:203:99:391,0,2209 chrV 23046 . A G 206.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.288;DP=180;Dels=0.00;FS=43.245;HaplotypeScore=10.3308;MLEAC=1;MLEAF=0.500;MQ=47.74;MQ0=3;MQRankSum=-7.578;QD=1.14;ReadPosRankSum=-0.486;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:137,43:180:99:236,0,2238 chrV 23052 . C G 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;DP=172;Dels=0.00;FS=43.808;HaplotypeScore=11.2107;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=3;MQRankSum=-7.366;QD=1.24;ReadPosRankSum=-1.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,43:172:99:243,0,2193 chrV 23061 . A T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;DP=157;Dels=0.00;FS=38.857;HaplotypeScore=11.6024;MLEAC=1;MLEAF=0.500;MQ=45.53;MQ0=5;MQRankSum=-6.820;QD=0.54;ReadPosRankSum=-0.591;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,37:157:99:115,0,1924 chrV 23494 . C T 2225 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.18;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2258,243,0 chrV 23801 . A G 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.420;QD=20.49;ReadPosRankSum=1.697;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2082,231,0 chrV 23976 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=97;Dels=0.00;FS=6.849;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.537;QD=19.04;ReadPosRankSum=2.319;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:2,92:97:99:1880,210,0 chrV 24025 . G C 1399 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.28;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1432,159,0 chrV 24079 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1708,189,0 chrV 24112 . A T 1543 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.29;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1576,180,0 chrV 24180 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.04;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1644,180,0 chrV 24354 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=81;Dels=0.00;FS=3.066;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.416;QD=21.36;ReadPosRankSum=2.265;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1763,198,0 chrV 24392 . A T 1831 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.48;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1864,207,0 chrV 24419 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.27;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,86:90:99:2037,222,0 chrV 24446 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.35;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1910,213,0 chrV 24575 . T C 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=68;Dels=0.00;FS=2.533;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.531;QD=18.90;ReadPosRankSum=2.895;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:3,64:68:99:1318,150,0 chrV 24596 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.42;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1544,177,0 chrV 24661 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.25;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1631,180,0 chrV 24670 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.60;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1707,192,0 chrV 24749 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=14.65;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1425,159,0 chrV 24902 . G A 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6302;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.74;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2642,291,0 chrV 25237 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.81;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1933,207,0 chrV 25510 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1488,159,0 chrV 25590 . A G 1704 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.67;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1737,195,0 chrV 26206 . G C 2142 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.00;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2175,243,0 chrV 26265 . A C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8142;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.875;QD=20.08;ReadPosRankSum=1.625;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,96:100:99:2041,228,0 chrV 26313 . G T 1704 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.04;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1737,195,0 chrV 26322 . C G 1488 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3623;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=15.83;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1521,174,0 chrV 26594 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.42;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2346,258,0 chrV 26674 . A G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.542;QD=18.26;ReadPosRankSum=1.697;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1841,207,0 chrV 26678 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.55;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1832,201,0 chrV 26685 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=17.83;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1834,201,0 chrV 26780 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4281;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.47;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2203,240,0 chrV 26798 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.86;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2070,225,0 chrV 27083 . C A 1719 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.76;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1752,192,0 chrV 27116 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=4.027;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.514;QD=16.65;ReadPosRankSum=1.694;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1565,177,0 chrV 27260 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.67;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2141,231,0 chrV 27636 . C A 2488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.25;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2521,273,0 chrV 27912 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.27;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2075,234,0 chrV 27932 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.13;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1755,195,0 chrV 28312 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.48;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2264,252,0 chrV 28649 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6687;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.77;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1931,210,0 chrV 28694 . T G 2203 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.03;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2236,258,0 chrV 29294 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1724,189,0 chrV 29688 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2130,243,0 chrV 29802 . T G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=111;Dels=0.00;FS=3.385;HaplotypeScore=8.4436;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=1.446;QD=17.95;ReadPosRankSum=1.700;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2025,228,0 chrV 29815 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.04;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2165,240,0 chrV 29909 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2487,273,0 chrV 30664 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=8.4761;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.76;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1721,195,0 chrV 31263 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.66;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:969,105,0 chrV 31273 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.87;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1034,114,0 chrV 31663 . A G 1863 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.70;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1896,210,0 chrV 31867 . T C 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=107;Dels=0.00;FS=2.852;HaplotypeScore=7.7655;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.173;QD=22.33;ReadPosRankSum=2.381;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2422,273,0 chrV 33002 . A C 1841 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.16;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1874,213,0 chrV 33124 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.586;QD=19.61;ReadPosRankSum=1.659;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1896,210,0 chrV 33344 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.32;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1059,117,0 chrV 33348 . G T 921 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.71;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:954,105,0 chrV 33782 . C A 586 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.31;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:619,69,0 chrV 33888 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1247,141,0 chrV 34050 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.80;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1372,150,0 chrV 34622 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2430,270,0 chrV 34811 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.62;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1662,183,0 chrV 34979 . G A 2688 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2721,297,0 chrV 35672 . T C 2213 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.76;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2246,255,0 chrV 35780 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.49;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2177,246,0 chrV 37204 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1010,111,0 chrV 37407 . T C 880 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.44;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:913,102,0 chrV 37420 . A G 727 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.03;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:87:760,87,0 chrV 37441 . A T 648 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.34;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:681,75,0 chrV 37747 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.63;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1142,123,0 chrV 38716 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2207,237,0 chrV 38812 . T A 1743 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9257;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.51;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1776,198,0 chrV 39169 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.42;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,150,0 chrV 39304 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.02;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1420,156,0 chrV 39343 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.77;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1426,162,0 chrV 39607 . C G 1465 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.23;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1498,168,0 chrV 39651 . T A 1328 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.53;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1361,150,0 chrV 40520 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.37;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1948,219,0 chrV 40623 . A G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.939;QD=19.08;ReadPosRankSum=1.649;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1636,183,0 chrV 40835 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.950;QD=20.12;ReadPosRankSum=1.620;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1904,216,0 chrV 40988 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.373;QD=18.99;ReadPosRankSum=1.688;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1533,174,0 chrV 41039 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.93;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1875,207,0 chrV 41138 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.86;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1765,192,0 chrV 41432 . C G 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.11;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1280,144,0 chrV 41545 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=3.310;HaplotypeScore=13.9515;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.567;QD=15.79;ReadPosRankSum=1.501;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1707,192,0 chrV 41687 . A C 2305 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.82;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2338,261,0 chrV 41973 . G T 2593 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.2638;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.61;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2626,282,0 chrV 42216 . A C 649 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.22;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:682,75,0 chrV 42217 . C T 649 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.22;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:682,75,0 chrV 42418 . G A 2078 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.35;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2111,240,0 chrV 42490 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.04;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1091,120,0 chrV 43074 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.19;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2489,279,0 chrV 43113 . T G 2346 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.88;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2379,267,0 chrV 43251 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.61;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2540,279,0 chrV 43461 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=15.74;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1292,150,0 chrV 43485 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.03;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1356,150,0 chrV 43494 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=88;Dels=0.00;FS=5.020;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-1.192;QD=13.94;ReadPosRankSum=3.355;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1260,144,0 chrV 43578 . A G 2526 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=13.5456;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.28;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2559,291,0 chrV 43744 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.99;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1472,159,0 chrV 43746 . A G 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.066;QD=15.51;ReadPosRankSum=-1.688;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1274,125,0 chrV 44601 . T G 2571 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9912;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.77;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2604,291,0 chrV 44613 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.92;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2549,288,0 chrV 44763 . A G 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.879;QD=20.43;ReadPosRankSum=1.632;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1443,159,0 chrV 44986 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.30;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1973,222,0 chrV 44999 . C G 1663 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.08;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1696,192,0 chrV 45816 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1533,174,0 chrV 45866 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1402,156,0 chrV 45963 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.47;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1622,186,0 chrV 46022 . C T 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.477;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.176;QD=15.22;ReadPosRankSum=0.025;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1083,100,0 chrV 46030 . C G 1032 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=16.92;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1065,120,0 chrV 46268 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.06;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1445,162,0 chrV 46379 . C T 621 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.4721;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=13.21;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:654,72,0 chrV 46437 . C G 616 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=12.83;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:649,72,0 chrV 46500 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.81;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1276,144,0 chrV 46749 . T C 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=42.0092;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;MQRankSum=-0.990;QD=15.36;ReadPosRankSum=1.609;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:893,102,0 chrV 46838 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=17.66;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1216,129,0 chrV 46866 . T C 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.560;QD=14.57;ReadPosRankSum=1.359;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:980,111,0 chrV 46910 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.14;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1449,165,0 chrV 46984 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.60;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1954,216,0 chrV 46989 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.157;QD=19.48;ReadPosRankSum=1.653;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1747,198,0 chrV 47084 . G C 1341 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.97;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1374,156,0 chrV 47089 . T C 1365 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=16.45;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1398,156,0 chrV 47317 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.54;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1739,195,0 chrV 47503 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.18;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2617,285,0 chrV 47735 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.78;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2007,219,0 chrV 48384 . T C 3480.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.9594;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.75;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3480,387,0 chrV 49397 . T C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=5.172;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.257;QD=16.57;ReadPosRankSum=1.664;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1723,195,0 chrV 49885 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=21.43;ReadPosRankSum=1.690;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1790,198,0 chrV 50125 . A T 2037 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.58;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2070,222,0 chrV 50151 . A C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=91;Dels=0.00;FS=6.166;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.144;QD=20.02;ReadPosRankSum=2.901;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1855,207,0 chrV 51195 . C T 775 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:808,90,0 chrV 51366 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.53;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1347,150,0 chrV 52448 . A T 80.26 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=1.29;SB=-1.353e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:15:113,15,0 chrV 53456 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.26;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:884,96,0 chrV 53463 . A G 796 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.51;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:829,93,0 chrV 53537 . G T 846 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.59;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:879,93,0 chrV 53618 . T G 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.473;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.078;QD=18.75;ReadPosRankSum=1.577;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1289,147,0 chrV 53693 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.65;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1365,150,0 chrV 53704 . T C 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.287;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.133;QD=17.12;ReadPosRankSum=1.689;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1420,159,0 chrV 53764 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=13.2809;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.46;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1424,153,0 chrV 53781 . C T 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.449;QD=16.83;ReadPosRankSum=1.048;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1396,134,0 chrV 53785 . T A 1487 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.13;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1520,165,0 chrV 54138 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.29;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1705,186,0 chrV 55841 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.69;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2574,282,0 chrV 56039 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.99;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2826,303,0 chrV 56129 . A C 2527 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.44;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2560,291,0 chrV 56149 . A C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.142;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.163;QD=19.64;ReadPosRankSum=1.706;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2685,303,0 chrV 56315 . T C 4468.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.42;SB=-1.843e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:4468,507,0 chrV 56403 . T C 2436 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.03;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2469,288,0 chrV 56555 . T C 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=157;Dels=0.00;FS=3.038;HaplotypeScore=13.4859;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.402;QD=22.20;ReadPosRankSum=2.418;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:2,154:157:99:3486,390,0 chrV 56775 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.45;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1976,213,0 chrV 57003 . A C 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DP=128;Dels=0.00;FS=4.472;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.770;QD=19.21;ReadPosRankSum=0.220;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2492,254,0 chrV 57203 . C T 2053 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.13;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2086,228,0 chrV 57377 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.20;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2875,312,0 chrV 57707 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7367;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.51;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1977,216,0 chrV 57855 . T A 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=3.082;HaplotypeScore=5.1407;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.675;QD=18.41;ReadPosRankSum=1.675;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1193,135,0 chrV 57920 . A G 1958 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.98;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1991,222,0 chrV 58183 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=4.186;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.625;QD=21.81;ReadPosRankSum=1.696;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2170,246,0 chrV 59415 . C A 471 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=14.27;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:504,54,0 chrV 59424 . G T 481 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=31.5192;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=13.74;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:57:514,57,0 chrV 59515 . T C 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=3.123;HaplotypeScore=8.5544;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=0.350;QD=20.51;ReadPosRankSum=2.260;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:93:833,93,0 chrV 59555 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.70;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1486,162,0 chrV 60057 . A G 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=3.027;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.227;QD=21.00;ReadPosRankSum=2.363;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2427,279,0 chrV 61194 . A G 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=69;Dels=0.00;FS=3.424;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.945;QD=18.96;ReadPosRankSum=1.680;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,65:69:99:1341,150,0 chrV 61280 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.09;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1469,159,0 chrV 61456 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.60;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1999,225,0 chrV 61507 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1739,189,0 chrV 61667 . A G 1263 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.05;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1296,147,0 chrV 61799 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=22.55;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1634,180,0 chrV 61974 . T G 1970 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=20.52;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2003,225,0 chrV 62035 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=21.53;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2014,234,0 chrV 62117 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=7.584;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=0.121;QD=19.06;ReadPosRankSum=1.531;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1710,198,0 chrV 62137 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=70.4586;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=19.58;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1717,198,0 chrV 62154 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=14.68;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1413,156,0 chrV 62547 . A T 1602 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4702;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.63;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1635,177,0 chrV 62627 . C A 2173 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.51;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2206,234,0 chrV 62644 . T G 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=98;Dels=0.00;FS=6.250;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;MQRankSum=1.125;QD=16.03;ReadPosRankSum=0.554;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1604,155,0 chrV 62652 . T G 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=-0.931;QD=15.84;ReadPosRankSum=2.278;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:3,84:89:99:1443,162,0 chrV 62717 . C G 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.277;DP=77;Dels=0.00;FS=13.489;HaplotypeScore=4.7910;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=2.619;QD=16.61;ReadPosRankSum=-0.513;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1312,131,0 chrV 62736 . T A 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;DP=74;Dels=0.00;FS=6.452;HaplotypeScore=5.3506;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=2.330;QD=17.80;ReadPosRankSum=1.507;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1350,126,0 chrV 63122 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.35;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2161,246,0 chrV 63146 . T C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.776;QD=18.78;ReadPosRankSum=1.702;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2211,249,0 chrV 63176 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.94;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2258,255,0 chrV 63210 . G C 1802 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.84;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1835,207,0 chrV 63253 . A C 1707 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.18;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1740,195,0 chrV 63369 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.20;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1623,174,0 chrV 63594 . G A 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.732;QD=20.20;ReadPosRankSum=1.133;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1710,189,0 chrV 63784 . C T 2975 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0763;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=1;QD=22.04;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:3008,324,0 chrV 63847 . A C 1353 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0250;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.35;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1386,156,0 chrV 64152 . C A 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.262;DP=124;Dels=0.00;FS=6.113;HaplotypeScore=103.1735;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=3.131;QD=10.47;ReadPosRankSum=3.478;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:14,110:124:99:1331,130,0 chrV 64237 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5384;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.09;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1680,183,0 chrV 64421 . A T 1485 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.54;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1518,171,0 chrV 64680 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1516,165,0 chrV 64724 . A G 1149 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1182,135,0 chrV 64760 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.86;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1359,147,0 chrV 65087 . C T 513 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.32;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:60:546,60,0 chrV 65190 . A G 520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.391;QD=16.77;ReadPosRankSum=1.621;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:63:553,63,0 chrV 65194 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.62;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:602,66,0 chrV 65210 . A G 680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=-0.365;QD=17.44;ReadPosRankSum=1.550;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,37:39:81:713,81,0 chrV 65284 . T C 238 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.1420;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=9.15;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:271,30,0 chrV 65418 . G A 1970 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:77:99:2003,219,0 chrV 65622 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1115,126,0 chrV 65697 . G C 1457 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.68;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1490,171,0 chrV 66105 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.18;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1708,186,0 chrV 66141 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=18.62;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1746,201,0 chrV 66168 . G A 1604 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.44;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1637,177,0 chrV 66177 . A T 1461 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.05;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1494,168,0 chrV 67018 . G C 1287 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1320,150,0 chrV 67571 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=75.2900;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.20;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1598,174,0 chrV 67758 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.25;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1365,150,0 chrV 67770 . T C 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.577;QD=17.08;ReadPosRankSum=1.688;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1365,153,0 chrV 68268 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.20;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1822,210,0 chrV 68547 . G A 2769 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=20.1276;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.97;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2802,303,0 chrV 68643 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.26;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1959,228,0 chrV 68702 . C G 1720 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=14.33;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:120:99:1753,198,0 chrV 68714 . C G 1800 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=14.88;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,118:121:99:1833,207,0 chrV 68798 . T G 1726 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.43;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1759,204,0 chrV 68910 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.81;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3043,354,0 chrV 68945 . G T 3165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.662;QD=21.24;ReadPosRankSum=0.772;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,147:149:99:3198,351,0 chrV 68996 . G A 2192 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.11;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2225,246,0 chrV 69083 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.88;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1566,177,0 chrV 69202 . T G 803 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=15.75;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:836,96,0 chrV 69209 . A C 792 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=14.94;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:825,93,0 chrV 69229 . C T 865 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.32;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:898,99,0 chrV 69310 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=14.53;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1370,159,0 chrV 69368 . T G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.172;QD=20.07;ReadPosRankSum=1.697;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2040,231,0 chrV 69459 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.32;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1682,183,0 chrV 69468 . T C 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=3.227;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.253;QD=15.67;ReadPosRankSum=1.648;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1334,150,0 chrV 69568 . T G 659 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.47;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:692,78,0 chrV 69584 . C T 635 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=14.77;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:72:668,72,0 chrV 69592 . G C 643 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=15.68;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:676,78,0 chrV 69766 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.475;QD=17.75;ReadPosRankSum=0.743;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1826,213,0 chrV 69774 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.58;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1817,207,0 chrV 69939 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.78;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2214,249,0 chrV 70263 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.60;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2060,222,0 chrV 70335 . A C 2687 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=7.2420;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.85;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2720,300,0 chrV 70852 . T C 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=124;Dels=0.00;FS=6.040;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.918;QD=19.09;ReadPosRankSum=2.893;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:3,119:124:99:2400,267,0 chrV 70912 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.654;QD=19.19;ReadPosRankSum=0.720;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1741,201,0 chrV 70954 . A G 644 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=10.06;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:78:677,78,0 chrV 70961 . C A 730 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=9.61;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:84:763,84,0 chrV 70969 . A C 666 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=8.88;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:78:699,78,0 chrV 70986 . C T 805 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=9.58;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:838,93,0 chrV 71062 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=15.3323;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=15.93;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1706,192,0 chrV 71182 . G C 2223 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.16;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2256,255,0 chrV 71422 . A C 1910 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.21;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1943,219,0 chrV 71491 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=4.516;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.032;QD=20.04;ReadPosRankSum=1.592;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2037,234,0 chrV 71590 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.81;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1219,135,0 chrV 71611 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.77;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1426,159,0 chrV 71842 . T G 1279 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.44;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1312,144,0 chrV 72016 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.66;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1645,186,0 chrV 72037 . A C 1500 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.99;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1533,174,0 chrV 72089 . A G 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=6.834;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.310;QD=19.80;ReadPosRankSum=1.690;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1657,192,0 chrV 72214 . A C 2125 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.46;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2158,243,0 chrV 72502 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.34;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2252,252,0 chrV 72694 . T G 1789 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.03;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1822,210,0 chrV 72790 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.999;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.011;QD=20.94;ReadPosRankSum=2.384;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2378,273,0 chrV 72990 . T G 3663.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5695;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.58;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3663,414,0 chrV 73131 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.71;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2208,240,0 chrV 73604 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1879,210,0 chrV 73959 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=4.3203;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.520;QD=18.34;ReadPosRankSum=1.697;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1830,207,0 chrV 75594 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1028,111,0 chrV 75731 . T G 1557 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.96;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1590,174,0 chrV 76382 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.996;QD=21.52;ReadPosRankSum=1.689;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1776,201,0 chrV 77977 . G A 739 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.42;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:772,87,0 chrV 77986 . T C 700 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.07;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:733,84,0 chrV 78092 . A G 1867 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1900,225,0 chrV 78778 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.94;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1289,144,0 chrV 78808 . G T 1312 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.49;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1345,150,0 chrV 79075 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2428,267,0 chrV 80059 . A G 2494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.075;DP=137;Dels=0.00;FS=5.250;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;MQRankSum=-2.218;QD=18.20;ReadPosRankSum=3.394;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:4,133:137:99:2527,282,0 chrV 80081 . C T 2181 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=16.91;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2214,240,0 chrV 80083 . C T 2168 SnpCluster AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=16.81;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2201,243,0 chrV 80085 . A G 2199 SnpCluster AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=0;QD=16.79;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,129:131:99:2232,249,0 chrV 80096 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=15.19;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2023,228,0 chrV 80124 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.8421;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=16.82;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2102,234,0 chrV 80255 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.59;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1479,162,0 chrV 80303 . T A 1662 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1695,189,0 chrV 80633 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.95;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1529,174,0 chrV 80728 . C G 2104 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.30;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2137,237,0 chrV 80737 . A G 2116 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.09;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2149,243,0 chrV 81181 . A G 950 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2178;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.27;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:983,114,0 chrV 81644 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.3745;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.54;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2443,273,0 chrV 81713 . G A 2749 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.92;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2782,300,0 chrV 82064 . C G 1311 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=13.80;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1344,159,0 chrV 82875 . T G 1026 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.45;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1059,120,0 chrV 82923 . A T 2662 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2695,285,0 chrV 83200 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1215,135,0 chrV 84265 . A G 2716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=130;Dels=0.00;FS=2.993;HaplotypeScore=11.4482;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.123;QD=20.89;ReadPosRankSum=2.336;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2749,309,0 chrV 84562 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.88;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1206,135,0 chrV 84797 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.80;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1194,132,0 chrV 84929 . C T 748 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=40.4155;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=15.91;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:84:781,84,0 chrV 84939 . T C 735 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=39.4490;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=16.70;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:87:768,87,0 chrV 85009 . G A 729 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.57;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:762,84,0 chrV 85578 . C T 2536 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3871;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.44;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2569,282,0 chrV 85693 . T C 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3426;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.056;QD=20.99;ReadPosRankSum=2.360;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2363,270,0 chrV 86381 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.13;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1073,117,0 chrV 86770 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.35;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1441,159,0 chrV 86861 . T C 2586 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.63;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2619,294,0 chrV 86904 . T G 2166 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.04;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2199,252,0 chrV 87165 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.5664;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.46;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,128:133:99:2488,273,0 chrV 87554 . T C 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.236;QD=20.87;ReadPosRankSum=1.704;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2684,306,0 chrV 87608 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.12;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2395,267,0 chrV 87611 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.69;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2474,270,0 chrV 87900 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.08;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2362,255,0 chrV 87938 . G A 2723 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.47;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2756,300,0 chrV 88061 . C T 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.74;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3323,357,0 chrV 88121 . T C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.646;QD=19.94;ReadPosRankSum=1.646;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1648,189,0 chrV 88403 . A T 1851 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1884,210,0 chrV 88481 . C G 1831 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.54;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1864,213,0 chrV 88547 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.14;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2087,225,0 chrV 88700 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9048;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.75;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1633,183,0 chrV 89321 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.03;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1956,225,0 chrV 89795 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=9.7732;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.30;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1307,141,0 chrV 89860 . G A 74.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=54.5099;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.226;QD=1.08;ReadPosRankSum=-3.586;SB=2.49 GT:AD:DP:GQ:PL 1/1:58,8:69:12:107,12,0 chrV 89953 . G T 3395.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3395,372,0 chrV 90032 . G A 2883 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.29;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2916,312,0 chrV 90218 . A C 3000 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.69;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3033,345,0 chrV 90830 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.60;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1207,135,0 chrV 91109 . C T 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.670;QD=23.15;ReadPosRankSum=1.330;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2626,288,0 chrV 91332 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.73;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2164,240,0 chrV 91637 . C T 2611 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2644,297,0 chrV 91715 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.73;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1572,171,0 chrV 91751 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.04;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1590,177,0 chrV 92864 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.18;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2447,276,0 chrV 93878 . G C 2055 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.35;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2088,231,0 chrV 94049 . T A 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.767;QD=19.77;ReadPosRankSum=1.392;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1239,135,0 chrV 94089 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.42;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1054,117,0 chrV 94111 . A T 893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.318;QD=18.22;ReadPosRankSum=1.662;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:926,105,0 chrV 94158 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.33;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1151,129,0 chrV 94351 . G A 572 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.82;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:605,69,0 chrV 94374 . C T 586 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=9.5147;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.90;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:619,66,0 chrV 94419 . T A 799 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.49;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:832,90,0 chrV 94534 . T A 1127 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.43;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1160,123,0 chrV 94559 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.3563;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.81;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1331,150,0 chrV 94592 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.04;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1766,201,0 chrV 95228 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.82;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1779,192,0 chrV 95330 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=15.55;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1619,183,0 chrV 95345 . T C 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.808;QD=17.59;ReadPosRankSum=0.346;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1880,210,0 chrV 95441 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.88;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1581,177,0 chrV 95464 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5106;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.51;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1633,186,0 chrV 95696 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.46;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1900,207,0 chrV 95885 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=14.80;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1084,126,0 chrV 96083 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.77;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1239,135,0 chrV 96109 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.85;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1323,144,0 chrV 96236 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1688,186,0 chrV 96367 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.39;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1445,153,0 chrV 96428 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.27;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1522,171,0 chrV 96439 . G T 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.44;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,171,0 chrV 96764 . G T 1487 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.98;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1520,168,0 chrV 97220 . T G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=4.011;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.528;QD=18.71;ReadPosRankSum=1.681;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1324,150,0 chrV 97322 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.73;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1344,147,0 chrV 97416 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3567;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.51;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1594,180,0 chrV 97755 . T A 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=19.13;ReadPosRankSum=1.681;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1334,144,0 chrV 98051 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.6954;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.38;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1525,171,0 chrV 98270 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.18;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1345,147,0 chrV 98283 . A G 1249 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.64;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1282,147,0 chrV 98381 . T C 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.112;DP=69;Dels=0.00;FS=3.347;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.525;QD=17.35;ReadPosRankSum=1.422;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1230,138,0 chrV 98507 . T A 1693 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.40;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1726,189,0 chrV 98561 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=4.210;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.498;QD=20.67;ReadPosRankSum=1.692;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1831,201,0 chrV 98854 . A G 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=8.158;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;MQRankSum=-2.127;QD=20.52;ReadPosRankSum=2.248;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2536,288,0 chrV 98856 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=19.47;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2311,267,0 chrV 98872 . T C 2303 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9133;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.06;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2336,267,0 chrV 98906 . C G 3024 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.86;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3057,345,0 chrV 98961 . C T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3215;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.86;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3344,366,0 chrV 98997 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=18.12;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2135,231,0 chrV 98999 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=19.53;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2181,231,0 chrV 99031 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=14.50;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1700,192,0 chrV 99038 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=14.90;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1746,195,0 chrV 99089 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=150;Dels=0.00;FS=2.579;HaplotypeScore=3.5893;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=-2.430;QD=12.97;ReadPosRankSum=2.953;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:3,147:150:99:1978,222,0 chrV 99091 . C G 1883 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=0;QD=12.90;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:1916,219,0 chrV 99120 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=12.85;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:1768,192,0 chrV 99124 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=11.00;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:1606,180,0 chrV 99132 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=12.37;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:1839,207,0 chrV 99164 . A C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=2.828;HaplotypeScore=4.2701;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-1.954;QD=12.60;ReadPosRankSum=2.413;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:1722,192,0 chrV 99167 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=12.55;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:1677,183,0 chrV 99179 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=137;Dels=0.03;FS=7.717;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=-0.268;QD=12.32;ReadPosRankSum=2.339;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:1721,192,0 chrV 99194 . T G 2353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=159;Dels=0.00;FS=3.625;HaplotypeScore=13.0076;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=-0.970;QD=14.80;ReadPosRankSum=1.710;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:1,158:159:99:2386,270,0 chrV 99237 . G A 2924 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.62;SB=-1.894e+03 GT:AD:DP:GQ:PL 1/1:0,155:157:99:2957,324,0 chrV 99302 . A G 2367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=2.739;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.930;QD=19.09;ReadPosRankSum=2.330;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,121:124:99:2400,270,0 chrV 99312 . G T 2160 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=18.46;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2193,243,0 chrV 99323 . A C 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=1.027;QD=19.88;ReadPosRankSum=1.701;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2279,252,0 chrV 99441 . T G 1881 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=19.39;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1914,216,0 chrV 99519 . A G 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.01;FS=2.915;HaplotypeScore=20.4859;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.701;QD=18.03;ReadPosRankSum=1.932;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2106,234,0 chrV 99522 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=8.6175;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.34;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2096,234,0 chrV 99672 . T A 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.830;QD=22.37;ReadPosRankSum=1.674;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2717,297,0 chrV 99707 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.16;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2488,279,0 chrV 100056 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.60;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2032,222,0 chrV 100074 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.13;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1583,171,0 chrV 100108 . A T 1023 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.46;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1056,114,0 chrV 100213 . T A 683 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.97;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:78:716,78,0 chrV 100307 . T C 1134 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.22;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1167,129,0 chrV 100352 . A G 495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.7021;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=-1.077;QD=13.38;ReadPosRankSum=1.639;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:60:528,60,0 chrV 100389 . T G 364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.716;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;MQRankSum=-1.733;QD=9.10;ReadPosRankSum=1.646;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:45:397,45,0 chrV 100391 . A G 377 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.67;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:410,48,0 chrV 100400 . T A 438 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=10.68;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:54:471,54,0 chrV 100402 . T C 419 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=10.22;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:51:452,51,0 chrV 100406 . T G 444 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=9.45;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:54:477,54,0 chrV 100451 . A G 717 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.59;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:84:750,84,0 chrV 100635 . T G 617 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.63;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:650,75,0 chrV 100681 . A T 1659 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4140;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.75;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1692,180,0 chrV 101285 . T A 1152 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.00;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1185,129,0 chrV 101365 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.21;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1518,171,0 chrV 101531 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.82;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1151,126,0 chrV 101643 . T A 779 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.70;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:812,90,0 chrV 101687 . A G 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=51;Dels=0.00;FS=2.960;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.626;QD=19.18;ReadPosRankSum=2.305;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1011,114,0 chrV 101819 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.40;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1390,156,0 chrV 102020 . G A 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;DP=83;Dels=0.00;FS=6.638;HaplotypeScore=7.1663;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.690;QD=23.88;ReadPosRankSum=1.690;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2015,219,0 chrV 102185 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.48;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1429,159,0 chrV 102203 . A G 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=4.907;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.666;QD=20.36;ReadPosRankSum=1.679;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1377,153,0 chrV 102407 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1903,204,0 chrV 102887 . T C 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.412;QD=21.30;ReadPosRankSum=1.622;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1375,153,0 chrV 102999 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1469,162,0 chrV 103136 . A G 1698 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1731,195,0 chrV 103272 . A T 980 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.00;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1013,111,0 chrV 103548 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.64;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1580,171,0 chrV 103610 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.28;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1209,132,0 chrV 103937 . A G 1857 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.65;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1890,213,0 chrV 104194 . C G 1286 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.19;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1319,147,0 chrV 104269 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=15.42;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1128,126,0 chrV 104270 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=16.07;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1158,129,0 chrV 104393 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=11.3001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1325,141,0 chrV 104648 . T A 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=4.694;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.052;QD=16.67;ReadPosRankSum=1.609;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:983,108,0 chrV 105029 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.63;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1504,162,0 chrV 105087 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.56;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1941,210,0 chrV 105192 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.87;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1914,210,0 chrV 105311 . A C 1644 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.87;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1677,186,0 chrV 105319 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=1.399;QD=15.64;ReadPosRankSum=1.666;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1660,189,0 chrV 105345 . G T 2078 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.89;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2111,225,0 chrV 105369 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7381;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.12;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2117,228,0 chrV 105437 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=23.04;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2406,261,0 chrV 105493 . A G 1884 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.41;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1917,216,0 chrV 105739 . C T 2205 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=18.69;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2238,249,0 chrV 105743 . G A 2218 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.03;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2251,246,0 chrV 105746 . A G 2133 SnpCluster AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=17.06;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2166,243,0 chrV 105770 . T C 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=147;Dels=0.00;FS=2.951;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=0.092;QD=16.61;ReadPosRankSum=2.416;SB=-1.648e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:2475,279,0 chrV 105816 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.03;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=15.89;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1924,216,0 chrV 105842 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.5688;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.16;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1908,213,0 chrV 105854 . G C 2013 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.2903;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.21;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2046,231,0 chrV 106188 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.09;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2625,285,0 chrV 106333 . G T 1256 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1879;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.29;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1289,141,0 chrV 106423 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.45;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1383,153,0 chrV 106607 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.406;QD=20.91;ReadPosRankSum=1.689;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1748,195,0 chrV 106651 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.36;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1465,165,0 chrV 106745 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.36;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1756,201,0 chrV 106753 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=17.63;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1778,201,0 chrV 106808 . T G 1726 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.28;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1759,198,0 chrV 106822 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.41;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1745,198,0 chrV 106944 . C A 1485 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=18.56;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1518,171,0 chrV 107341 . C G 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.83;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1845,207,0 chrV 107574 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6236;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.65;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1935,216,0 chrV 107580 . G T 1879 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.79;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1912,210,0 chrV 107929 . A G 1652 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.40;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1685,189,0 chrV 108381 . G T 1668 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1701,189,0 chrV 108750 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.96;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1279,144,0 chrV 109005 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.01;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1674,189,0 chrV 109062 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.33;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1371,156,0 chrV 109461 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.41;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1683,183,0 chrV 109698 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.66;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2037,225,0 chrV 109718 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.49;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2096,228,0 chrV 110241 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.39;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2643,291,0 chrV 110799 . C A 1810 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.81;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1843,201,0 chrV 110960 . C G 942 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:975,111,0 chrV 111014 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.75;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1398,156,0 chrV 111083 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1436,162,0 chrV 111164 . T A 2779 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.8171;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.71;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2812,303,0 chrV 111431 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.69;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2441,264,0 chrV 111615 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.98;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1795,201,0 chrV 111780 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.79;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2604,279,0 chrV 111840 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7799;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.55;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2040,231,0 chrV 112632 . A G 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=7.539;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.019;QD=21.57;ReadPosRankSum=2.375;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1478,165,0 chrV 113079 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.70;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:63:99:1337,144,0 chrV 113148 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.93;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1687,186,0 chrV 113178 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.09;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1434,162,0 chrV 113187 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.67;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1545,168,0 chrV 113919 . A C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=2.762;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.109;QD=18.20;ReadPosRankSum=2.388;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1471,162,0 chrV 113925 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.76;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1454,162,0 chrV 113964 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.33;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1781,195,0 chrV 114726 . A G 666 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:699,78,0 chrV 114867 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1237,141,0 chrV 114984 . T C 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.410;QD=21.66;ReadPosRankSum=1.491;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:99:986,114,0 chrV 115024 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.37;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:917,102,0 chrV 115035 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.17;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1196,132,0 chrV 115090 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.59;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1289,138,0 chrV 115473 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.50;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2376,255,0 chrV 115669 . T A 929 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:962,111,0 chrV 115890 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.22;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1610,174,0 chrV 115973 . G A 127.13 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=1.93;SB=-4.511e+02 GT:AD:DP:GQ:PL 1/1:0,59:65:18:160,18,0 chrV 115997 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=15.07;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:952,108,0 chrV 116086 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.00;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1252,138,0 chrV 116577 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.46;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1602,177,0 chrV 117013 . A C 1355 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.22;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1388,153,0 chrV 117072 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.4778;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.10;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1504,165,0 chrV 117134 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.466;DP=72;Dels=0.00;FS=4.976;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.254;QD=18.60;ReadPosRankSum=3.694;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:5,66:72:99:1372,156,0 chrV 117318 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2028,222,0 chrV 117889 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0428;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.85;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2112,231,0 chrV 118055 . A G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.595;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.610;QD=19.71;ReadPosRankSum=2.282;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1787,201,0 chrV 118141 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=18.54;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1590,177,0 chrV 118149 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=18.66;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1563,171,0 chrV 118211 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=82.6167;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=0.22;SB=-7.438e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:6:51,6,0 chrV 118286 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.60;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1916,219,0 chrV 118301 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.25;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1861,204,0 chrV 118304 . A G 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.589;QD=16.68;ReadPosRankSum=1.698;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1751,201,0 chrV 118421 . T C 448 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=15.45;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:57:481,57,0 chrV 118505 . C A 1755 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=17.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1788,204,0 chrV 118509 . A T 1852 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=18.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1885,207,0 chrV 118510 . A G 1688 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=16.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1721,207,0 chrV 118537 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=16.21;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1573,189,0 chrV 118608 . G A 558 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.8796;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:66:591,66,0 chrV 118809 . A G 1752 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=25.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1785,201,0 chrV 118846 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.93;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2102,228,0 chrV 119169 . T A 3488.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=166;Dels=0.00;FS=8.599;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.828;QD=21.01;ReadPosRankSum=2.390;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:2,164:166:99:3488,378,0 chrV 119201 . C T 3341.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.50;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3341,360,0 chrV 119334 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.11;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2731,306,0 chrV 119379 . A G 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.00;FS=2.766;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-1.673;QD=18.29;ReadPosRankSum=2.396;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1716,195,0 chrV 119388 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.04;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1686,183,0 chrV 119409 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.73;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1464,162,0 chrV 119435 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.927;QD=15.51;ReadPosRankSum=1.692;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1367,153,0 chrV 119453 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=15.01;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1429,165,0 chrV 119513 . T G 1312 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.49;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1345,150,0 chrV 119517 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=16.74;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1272,147,0 chrV 119673 . A G 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.742;DP=107;Dels=0.00;FS=12.647;HaplotypeScore=24.8085;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.352;QD=18.74;ReadPosRankSum=4.922;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:9,98:107:99:2038,231,0 chrV 119706 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.06;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1754,195,0 chrV 119741 . T A 1522 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.85;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1555,168,0 chrV 119908 . G T 1242 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.70;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1275,138,0 chrV 119917 . C G 1148 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=18.22;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1181,132,0 chrV 120144 . G C 1156 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.64;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1189,135,0 chrV 120392 . T A 1441 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=2.8662;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.24;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1474,162,0 chrV 120417 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=3.287;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.877;QD=18.06;ReadPosRankSum=1.689;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1514,168,0 chrV 120418 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=6.871;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.472;QD=18.89;ReadPosRankSum=2.389;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1563,174,0 chrV 120900 . A T 1852 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=23.44;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1885,207,0 chrV 120933 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.93;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2046,234,0 chrV 121032 . T C 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=6.586;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.930;QD=18.31;ReadPosRankSum=2.903;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1351,153,0 chrV 121077 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.72;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1879,213,0 chrV 121112 . C A 2117 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.55;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2150,234,0 chrV 121136 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.32;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1868,204,0 chrV 121304 . T C 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.220;QD=14.97;ReadPosRankSum=1.635;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1096,123,0 chrV 121308 . A T 984 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=15.37;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1017,111,0 chrV 121351 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.66;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1227,138,0 chrV 121371 . T A 1487 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.24;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1520,165,0 chrV 122148 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,34:36:84:794,84,0 chrV 122181 . G A 591 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.38;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:624,69,0 chrV 122325 . A C 478 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:57:511,57,0 chrV 123266 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.5366;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.47;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2380,258,0 chrV 123378 . T C 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=47;Dels=0.00;FS=9.938;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.513;QD=19.26;ReadPosRankSum=2.847;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:3,43:47:99:938,105,0 chrV 123483 . T C 1755 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.29;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1788,201,0 chrV 123734 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.66;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1415,156,0 chrV 123977 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.00;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1635,177,0 chrV 124202 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.21;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2012,216,0 chrV 124424 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.32;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1289,147,0 chrV 124517 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0799;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.79;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1649,180,0 chrV 124970 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.124;QD=20.49;ReadPosRankSum=1.706;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2717,312,0 chrV 125141 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=16.71;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1821,210,0 chrV 125204 . G C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=1.691;QD=18.15;ReadPosRankSum=0.371;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1558,174,0 chrV 125211 . A T 1298 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.22;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1331,147,0 chrV 125221 . C G 1311 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=16.81;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1344,150,0 chrV 125279 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=14.85;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1563,171,0 chrV 125368 . A T 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=3.066;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.066;QD=18.12;ReadPosRankSum=1.688;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1501,165,0 chrV 125388 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.26;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1689,192,0 chrV 125566 . C G 2152 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.89;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2185,252,0 chrV 125694 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3339;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.45;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1803,201,0 chrV 125756 . T A 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=8.278;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.208;QD=15.95;ReadPosRankSum=2.226;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1261,135,0 chrV 125757 . G A 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=8.658;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.280;QD=16.23;ReadPosRankSum=2.187;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1250,135,0 chrV 126071 . G A 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5545;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.498;QD=23.34;ReadPosRankSum=1.404;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1760,176,0 chrV 126254 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.36;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1293,144,0 chrV 126316 . T G 1152 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.86;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1185,132,0 chrV 126477 . C G 1217 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.64;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1250,141,0 chrV 126600 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.14;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1760,192,0 chrV 126652 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.34;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1977,222,0 chrV 127024 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7235;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.26;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2229,249,0 chrV 127042 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.14;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2174,246,0 chrV 127050 . A G 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.531;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.726;QD=16.74;ReadPosRankSum=1.620;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2109,237,0 chrV 127286 . T C 2461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=3.044;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.819;QD=18.79;ReadPosRankSum=1.705;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,128:131:99:2494,279,0 chrV 127516 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.1668;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.76;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1890,216,0 chrV 127548 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.55;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1499,165,0 chrV 127687 . G C 2314 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.48;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2347,264,0 chrV 128035 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.630;QD=21.67;ReadPosRankSum=1.680;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1463,165,0 chrV 128953 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.84;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1426,159,0 chrV 129112 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.68;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1543,165,0 chrV 129286 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.46;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1629,180,0 chrV 129322 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.09;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1657,189,0 chrV 129481 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.68;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2649,297,0 chrV 129523 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1720,198,0 chrV 129628 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6098;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.58;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1556,174,0 chrV 130108 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.67;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1801,195,0 chrV 130174 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.3772;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.55;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1636,183,0 chrV 130380 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1106,126,0 chrV 130887 . G A 460 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.17;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:57:493,57,0 chrV 131173 . C A 1272 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.99;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1305,141,0 chrV 131177 . A C 1242 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.54;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1275,141,0 chrV 131509 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.65;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,102:108:99:2371,270,0 chrV 131539 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1692,195,0 chrV 131827 . A G 3515.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.7058;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.686;QD=23.13;ReadPosRankSum=0.837;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:1,150:152:99:3515,390,0 chrV 132404 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.51;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:96:866,96,0 chrV 132588 . G A 554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;DP=53;Dels=0.00;FS=7.690;HaplotypeScore=2.6550;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.511;QD=10.45;ReadPosRankSum=1.511;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:69:587,69,0 chrV 132762 . A G 533 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.38;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:66:566,66,0 chrV 132767 . T A 497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.609;QD=17.75;ReadPosRankSum=1.609;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:57:530,57,0 chrV 133048 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=4.688;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.026;QD=12.90;ReadPosRankSum=1.598;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:1388,156,0 chrV 133078 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=13.58;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1296,144,0 chrV 133248 . G T 1775 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.17;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1808,195,0 chrV 133566 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.8125;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.71;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1343,150,0 chrV 133686 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.71;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1193,132,0 chrV 133776 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1757,192,0 chrV 134484 . G A 3479.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=19.1263;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.08;SB=-2.031e+03 GT:AD:DP:GQ:PL 1/1:0,163:165:99:3479,378,0 chrV 134795 . T C 2269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=5.315;HaplotypeScore=7.2896;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.408;QD=16.56;ReadPosRankSum=1.707;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2302,255,0 chrV 134805 . C T 2324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0200;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.151;QD=16.72;ReadPosRankSum=0.822;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2357,255,0 chrV 134844 . T G 2477 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.2567;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=17.82;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2510,285,0 chrV 135398 . T C 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=0.467;QD=23.54;ReadPosRankSum=1.622;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1516,168,0 chrV 135550 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=23.89;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1132,126,0 chrV 136024 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.331;QD=22.07;ReadPosRankSum=1.693;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2019,225,0 chrV 136240 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=18.98;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1893,207,0 chrV 136262 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=16.68;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1885,207,0 chrV 136419 . T A 1358 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.90;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1391,153,0 chrV 136509 . A T 24.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=60.5344;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=1.714;QD=0.33;ReadPosRankSum=-3.780;SB=-1.909e+01 GT:AD:DP:GQ:PL 0/1:63,10:73:14:54,0,14 chrV 136721 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.46;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1628,177,0 chrV 136922 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.73;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1513,168,0 chrV 137844 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.27;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1993,225,0 chrV 138269 . T C 2417 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.9343;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.88;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2450,276,0 chrV 138317 . G A 3385.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;DP=151;Dels=0.00;FS=6.344;HaplotypeScore=6.7990;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=2.271;QD=22.42;ReadPosRankSum=0.236;SB=-1.772e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3385,369,0 chrV 138369 . A G 3497.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.421;DP=163;Dels=0.00;FS=16.094;HaplotypeScore=16.6669;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.056;QD=21.45;ReadPosRankSum=4.720;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:8,155:163:99:3497,380,0 chrV 138567 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.95;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2667,291,0 chrV 138600 . A G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.466;QD=20.33;ReadPosRankSum=1.566;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2147,243,0 chrV 138652 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.46;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1649,183,0 chrV 138653 . T C 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.01;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1672,186,0 chrV 138799 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2046,234,0 chrV 139492 . T G 1512 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.91;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1545,171,0 chrV 139659 . A G 966 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.37;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:999,114,0 chrV 140298 . G A 240 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.46;SB=-1.339e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:273,30,0 chrV 140430 . T A 867 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:900,96,0 chrV 140620 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.69;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1292,141,0 chrV 140700 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1702,183,0 chrV 141117 . A G 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=66;Dels=0.00;FS=3.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.974;QD=17.58;ReadPosRankSum=1.678;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1193,135,0 chrV 141189 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2014,222,0 chrV 141485 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.47;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1437,156,0 chrV 141779 . T C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.620;QD=21.26;ReadPosRankSum=2.369;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1989,225,0 chrV 142188 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1768,198,0 chrV 142227 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1352,150,0 chrV 142565 . G A 663 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:696,75,0 chrV 142607 . C A 625 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:658,72,0 chrV 143305 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1389,159,0 chrV 143601 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.62;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1917,207,0 chrV 143606 . T A 1696 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.13;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1729,201,0 chrV 144159 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.83;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1701,186,0 chrV 144265 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8689;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.058;QD=20.83;ReadPosRankSum=1.693;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1949,219,0 chrV 144521 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.37;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1854,207,0 chrV 145151 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.44;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2210,240,0 chrV 145464 . T G 1216 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.39;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1249,141,0 chrV 145503 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.51;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1329,147,0 chrV 145541 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.56;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1499,162,0 chrV 145569 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.49;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1378,156,0 chrV 145745 . T G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.684;QD=20.50;ReadPosRankSum=2.362;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:2,54:58:99:1222,138,0 chrV 146273 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.938;QD=19.86;ReadPosRankSum=1.637;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2198,243,0 chrV 146845 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2164,246,0 chrV 147672 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.12;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1421,159,0 chrV 148485 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.10;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1447,162,0 chrV 148773 . A G 2729 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.37;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2762,321,0 chrV 150005 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.88;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:81:743,81,0 chrV 150086 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1160,132,0 chrV 150304 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.91;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1826,207,0 chrV 150355 . A G 1318 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.97;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1351,153,0 chrV 151103 . T A 784 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.42;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:817,90,0 chrV 151441 . A G 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=6.734;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.893;QD=22.48;ReadPosRankSum=1.628;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:87:775,87,0 chrV 151454 . G A 624 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.11;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:657,72,0 chrV 151518 . T G 907 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.09;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:940,105,0 chrV 151653 . T A 2011 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.86;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2044,222,0 chrV 152027 . C T 157.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:190,21,0 chrV 152072 . A T 308 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:36:341,36,0 chrV 152132 . C A 1088 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1121,120,0 chrV 152206 . G A 641 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.26;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:72:674,72,0 chrV 152213 . G A 688 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=13.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:81:721,81,0 chrV 152275 . T C 1601 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.222;QD=20.53;ReadPosRankSum=1.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1634,183,0 chrV 152616 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5999;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=18.79;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1668,180,0 chrV 152630 . A T 1524 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.36;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1557,171,0 chrV 152800 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.32;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1257,138,0 chrV 153129 . A C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=6.226;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.133;QD=20.85;ReadPosRankSum=2.374;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1388,156,0 chrV 153241 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.84;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1471,165,0 chrV 153284 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.01;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1462,165,0 chrV 153551 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.84;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1845,213,0 chrV 153808 . A G 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=112;Dels=0.00;FS=2.592;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=1.591;QD=19.87;ReadPosRankSum=2.737;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,108:112:99:2258,255,0 chrV 153840 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.37;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2035,222,0 chrV 153844 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=6.1322;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=17.02;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1871,204,0 chrV 153989 . G T 1451 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1484,162,0 chrV 154354 . T C 986 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1019,117,0 chrV 154390 . C G 953 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:986,111,0 chrV 154437 . C A 1208 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1241,135,0 chrV 154497 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.53;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1429,159,0 chrV 154531 . T A 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.265;QD=19.58;ReadPosRankSum=2.322;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1541,171,0 chrV 154915 . A C 1556 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.23;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1589,180,0 chrV 155130 . G C 1734 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6157;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.85;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1767,204,0 chrV 155613 . A T 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=5.093;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.536;QD=22.05;ReadPosRankSum=1.608;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1907,210,0 chrV 155918 . G T 951 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=16.68;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:984,111,0 chrV 156540 . T G 613 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=12.02;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:646,72,0 chrV 156762 . T C 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.208;QD=23.05;ReadPosRankSum=1.692;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2015,228,0 chrV 157149 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.92;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2188,240,0 chrV 157238 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.25;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1361,147,0 chrV 157279 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1836,210,0 chrV 157328 . A T 2007 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.69;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2040,222,0 chrV 157488 . C T 683 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.97;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:81:716,81,0 chrV 157769 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.79;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1389,159,0 chrV 157792 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.61;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1497,165,0 chrV 158171 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.34;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1740,189,0 chrV 158386 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.11;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1428,162,0 chrV 158690 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=16.21;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1168,126,0 chrV 158705 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.20;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:960,108,0 chrV 159092 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.15;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1242,144,0 chrV 159422 . T C 2175 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0690;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.32;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2208,249,0 chrV 159475 . C A 2188 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.86;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2221,249,0 chrV 159624 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2354,255,0 chrV 159875 . A G 1551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.124;QD=18.25;ReadPosRankSum=1.691;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1584,180,0 chrV 159882 . C G 1449 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.11;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1482,171,0 chrV 160010 . T C 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=16.0018;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.443;QD=16.66;ReadPosRankSum=1.691;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1466,165,0 chrV 160192 . A C 1445 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.06;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1478,165,0 chrV 160282 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.66;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1470,165,0 chrV 160729 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.86;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1702,192,0 chrV 161191 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1674,186,0 chrV 161767 . T A 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.372;QD=20.03;ReadPosRankSum=1.642;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1595,180,0 chrV 161851 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.55;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1870,207,0 chrV 162008 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=3.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.014;QD=21.48;ReadPosRankSum=2.325;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1730,192,0 chrV 162250 . T C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=8.171;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=-0.694;QD=19.28;ReadPosRankSum=2.397;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1845,204,0 chrV 162251 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.66;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1881,204,0 chrV 163290 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.382;QD=24.35;ReadPosRankSum=1.697;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2444,273,0 chrV 164225 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.249;QD=19.96;ReadPosRankSum=1.647;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2468,282,0 chrV 164498 . T C 2571 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.72;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2604,294,0 chrV 164516 . T G 2967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3777;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.736;QD=23.93;ReadPosRankSum=1.986;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:3,120:124:99:3000,336,0 chrV 165547 . T G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.656;QD=22.98;ReadPosRankSum=2.396;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2170,243,0 chrV 166839 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.42;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2111,237,0 chrV 166901 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.93;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2292,255,0 chrV 167730 . T C 3830.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=167;Dels=0.00;FS=5.911;HaplotypeScore=5.3460;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=2.352;QD=22.93;ReadPosRankSum=2.946;SB=-1.893e+03 GT:AD:DP:GQ:PL 1/1:3,163:167:99:3830,426,0 chrV 167865 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2402,270,0 chrV 168779 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.26;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1107,123,0 chrV 168930 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.35;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1742,192,0 chrV 169005 . A G 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=3.475;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.226;QD=19.66;ReadPosRankSum=1.632;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1409,162,0 chrV 169109 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.79;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2107,231,0 chrV 169164 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.20;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2301,258,0 chrV 169431 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.87;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1841,201,0 chrV 169452 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.96;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1849,204,0 chrV 169611 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=11.326;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.308;QD=24.26;ReadPosRankSum=2.385;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1877,216,0 chrV 169740 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.41;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1159,129,0 chrV 169761 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.15;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1163,129,0 chrV 170070 . C T 1159 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=16.80;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1192,135,0 chrV 170319 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4648;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.69;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1703,192,0 chrV 170706 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.14;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1526,165,0 chrV 171381 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:902,99,0 chrV 171528 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1546,168,0 chrV 171603 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.46;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1558,174,0 chrV 171768 . T A 1304 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1337,144,0 chrV 172034 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1228,138,0 chrV 173003 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.94;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1876,207,0 chrV 173217 . T G 1382 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.06;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1415,159,0 chrV 173402 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.40;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1424,156,0 chrV 173562 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.63;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1486,162,0 chrV 173645 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.83;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1709,189,0 chrV 173664 . T C 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=3.017;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.672;QD=18.38;ReadPosRankSum=2.346;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1779,198,0 chrV 173833 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.48;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2138,231,0 chrV 173911 . A T 1748 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.13;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1781,192,0 chrV 173989 . A G 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=109;Dels=0.00;FS=2.663;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.095;QD=20.97;ReadPosRankSum=2.405;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2319,261,0 chrV 174633 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.90;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1662,186,0 chrV 174794 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.84;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1371,156,0 chrV 175154 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=4.075;HaplotypeScore=7.0677;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.226;QD=20.05;ReadPosRankSum=1.657;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1898,213,0 chrV 175434 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.12;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1314,144,0 chrV 175637 . C T 218.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.892;DP=112;Dels=0.00;FS=0.709;HaplotypeScore=8.1045;MLEAC=1;MLEAF=0.500;MQ=42.39;MQ0=0;MQRankSum=-4.375;QD=1.95;ReadPosRankSum=-0.346;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:63,49:112:99:248,0,676 chrV 175646 . A T 1141 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.7921;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=9.35;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1174,132,0 chrV 175655 . C T 308.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.840;DP=123;Dels=0.00;FS=0.714;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=43.48;MQ0=0;MQRankSum=-1.919;QD=2.50;ReadPosRankSum=-0.905;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:82,41:123:99:338,0,494 chrV 175660 . C G 54.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=43.01;MQ0=0;MQRankSum=-3.552;QD=0.46;ReadPosRankSum=-1.808;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:84,33:117:84:84,0,695 chrV 175661 . T C 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=43.01;MQ0=0;MQRankSum=-2.862;QD=0.93;ReadPosRankSum=-2.408;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:84,33:117:99:139,0,733 chrV 175674 . T C 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.174;HaplotypeScore=6.1593;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-1.059;QD=8.00;ReadPosRankSum=1.700;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:913,102,0 chrV 175745 . C T 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.826;DP=70;Dels=0.00;FS=17.637;HaplotypeScore=8.0646;MLEAC=1;MLEAF=0.500;MQ=46.78;MQ0=6;MQRankSum=-2.211;QD=0.91;ReadPosRankSum=-0.868;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:44,26:70:94:94,0,565 chrV 175781 . C T 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=78;Dels=0.00;FS=2.546;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=2;MQRankSum=0.907;QD=18.08;ReadPosRankSum=-1.014;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1443,119,0 chrV 175840 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8334;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.650;QD=21.73;ReadPosRankSum=1.696;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2141,243,0 chrV 176453 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1884,210,0 chrV 176974 . A G 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.514;QD=20.66;ReadPosRankSum=1.694;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1913,216,0 chrV 177073 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2482,270,0 chrV 177351 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.03;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1656,177,0 chrV 177453 . T A 1732 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.46;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1765,195,0 chrV 177849 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.72;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2919,327,0 chrV 178044 . A G 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.397;QD=14.71;ReadPosRankSum=1.621;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:960,108,0 chrV 178287 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.55;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1714,192,0 chrV 178371 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.56;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1461,165,0 chrV 178671 . T A 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.390;QD=19.93;ReadPosRankSum=1.647;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1667,195,0 chrV 178691 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.38;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1493,174,0 chrV 178728 . T A 1122 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.26;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1155,123,0 chrV 178729 . A C 1068 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=15.71;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1101,123,0 chrV 178786 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.441;DP=135;Dels=0.00;FS=18.510;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.769;QD=19.50;ReadPosRankSum=4.421;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:7,128:135:99:2666,300,0 chrV 178894 . T G 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.841;QD=21.73;ReadPosRankSum=1.666;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2315,264,0 chrV 179014 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=18.00;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1815,207,0 chrV 179020 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=17.78;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1847,210,0 chrV 179042 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=17.51;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1661,180,0 chrV 179058 . A C 1518 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=16.50;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1551,177,0 chrV 179137 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.02;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2282,249,0 chrV 179143 . G T 2120 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.4618;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.27;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2153,243,0 chrV 179334 . T C 1405 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.30;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1438,162,0 chrV 179359 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.80;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1428,159,0 chrV 179485 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.38;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1528,171,0 chrV 179488 . C A 1568 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.23;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1601,174,0 chrV 179545 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.05;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2279,258,0 chrV 179605 . T C 2889 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.07;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2922,327,0 chrV 179647 . T C 2334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.589;QD=23.34;ReadPosRankSum=1.663;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2367,264,0 chrV 179788 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.00;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1393,156,0 chrV 179849 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7855;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.07;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1909,207,0 chrV 180132 . T A 1635 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.46;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1668,189,0 chrV 180216 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.62;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2114,237,0 chrV 180460 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1506,162,0 chrV 181108 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.47;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1343,153,0 chrV 181132 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=15.67;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1130,129,0 chrV 181135 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=16.54;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1191,132,0 chrV 181306 . A G 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.421;QD=20.86;ReadPosRankSum=2.356;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1681,192,0 chrV 181388 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.10;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1835,201,0 chrV 181486 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.30;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1951,219,0 chrV 181518 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.30;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1884,210,0 chrV 181576 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.92;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1665,183,0 chrV 181621 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.80;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2085,228,0 chrV 181705 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.586;QD=22.03;ReadPosRankSum=1.683;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1619,180,0 chrV 182242 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.12;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2252,243,0 chrV 182338 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=81;Dels=0.00;FS=9.363;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.213;QD=19.73;ReadPosRankSum=2.913;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1631,180,0 chrV 182340 . A T 1711 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.12;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1744,186,0 chrV 182381 . A T 1531 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.41;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1564,171,0 chrV 183270 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.93;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1737,186,0 chrV 183277 . A T 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;DP=99;Dels=0.00;FS=4.472;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.848;QD=15.54;ReadPosRankSum=1.661;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1571,177,0 chrV 183424 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.59;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1495,171,0 chrV 183549 . C T 844 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.96;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:877,96,0 chrV 183617 . A G 1333 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=15.50;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1366,153,0 chrV 183864 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.95;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,189,0 chrV 183910 . C G 2002 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.41;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2035,228,0 chrV 183957 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.20;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1587,180,0 chrV 184027 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.04;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1347,153,0 chrV 184291 . A C 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.531;QD=20.20;ReadPosRankSum=1.692;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1770,195,0 chrV 184363 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.18;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1126,126,0 chrV 184661 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.11;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1360,156,0 chrV 184684 . T C 1160 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.33;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1193,135,0 chrV 185026 . T C 1165 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1198,135,0 chrV 185983 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.20;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1343,153,0 chrV 186610 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.51;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1633,177,0 chrV 186622 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.81;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1557,174,0 chrV 186649 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.42;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1654,189,0 chrV 186697 . C A 1541 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.40;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1574,171,0 chrV 187027 . T C 4067.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.427;DP=183;Dels=0.00;FS=4.504;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.946;QD=22.22;ReadPosRankSum=4.478;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:7,176:183:99:4067,465,0 chrV 187071 . G T 3196 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.58;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3229,351,0 chrV 187192 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.05;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1275,138,0 chrV 187309 . A C 2450 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.88;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2483,279,0 chrV 187357 . G A 2869 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5654;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.49;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2902,318,0 chrV 187466 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.82;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1425,162,0 chrV 187482 . T A 1306 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.49;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1339,144,0 chrV 187519 . T C 928 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.85;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:961,108,0 chrV 187631 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=17.71;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:883,99,0 chrV 187642 . T C 626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;MQRankSum=1.368;QD=16.47;ReadPosRankSum=1.459;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:75:659,75,0 chrV 187648 . G A 612 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=16.54;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:72:645,72,0 chrV 187679 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.31;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1153,123,0 chrV 187705 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.66;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1376,153,0 chrV 187751 . A T 1367 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=16.47;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1400,147,0 chrV 187774 . T A 849 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=57.8902;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=12.49;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:882,99,0 chrV 187805 . C T 641 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=10.51;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:75:674,75,0 chrV 187817 . T A 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=-1.251;QD=9.54;ReadPosRankSum=1.684;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:78:720,78,0 chrV 187824 . C G 741 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=10.29;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:87:774,87,0 chrV 187838 . A G 794 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=13.46;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:827,90,0 chrV 187885 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=12.51;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:796,90,0 chrV 187939 . A G 497 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=39.6463;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=9.38;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:530,60,0 chrV 188018 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.9542;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=20.29;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1453,162,0 chrV 188040 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=17.48;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1379,153,0 chrV 188051 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.60;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1300,141,0 chrV 188435 . A G 1794 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.71;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1827,204,0 chrV 188861 . G C 1530 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1563,177,0 chrV 188873 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=15.71;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1510,171,0 chrV 189415 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.96;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1159,129,0 chrV 189662 . A G 1397 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1430,165,0 chrV 190070 . A G 2262 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.75;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2295,258,0 chrV 190706 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.19;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1543,168,0 chrV 191360 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.45;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1853,201,0 chrV 191532 . C T 2990 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.3744;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.48;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3023,324,0 chrV 191865 . T C 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.690;HaplotypeScore=5.4005;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.602;QD=19.27;ReadPosRankSum=1.707;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2692,303,0 chrV 192024 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.0023;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.775;QD=23.42;ReadPosRankSum=1.687;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1813,201,0 chrV 192065 . G T 1164 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1197,129,0 chrV 192121 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.17;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1566,171,0 chrV 192181 . A T 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=4.771;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.031;QD=20.08;ReadPosRankSum=1.650;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1760,192,0 chrV 192701 . T C 172.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;DP=104;Dels=0.00;FS=4.800;HaplotypeScore=80.7321;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=1;MQRankSum=2.193;QD=1.65;ReadPosRankSum=-3.918;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:82,22:104:99:202,0,1389 chrV 192714 . G T 230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;DP=105;Dels=0.00;FS=1.841;HaplotypeScore=18.8660;MLEAC=1;MLEAF=0.500;MQ=56.46;MQ0=1;MQRankSum=-1.227;QD=2.19;ReadPosRankSum=-3.262;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:79,26:105:99:260,0,1164 chrV 192719 . G A 1230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;DP=98;Dels=0.00;FS=0.935;HaplotypeScore=19.0572;MLEAC=1;MLEAF=0.500;MQ=56.94;MQ0=1;MQRankSum=1.923;QD=12.55;ReadPosRankSum=5.347;SB=-7.640e+02 GT:AD:DP:GQ:PL 0/1:21,77:98:99:1260,0,178 chrV 192892 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.278;QD=22.12;ReadPosRankSum=2.397;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2090,237,0 chrV 193011 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5685;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.85;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1859,213,0 chrV 193525 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4850;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.563;QD=21.52;ReadPosRankSum=2.389;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1776,201,0 chrV 193978 . C T 1841 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.38;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1874,204,0 chrV 194625 . T A 2583 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.83;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2616,285,0 chrV 194646 . T G 1987 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.57;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2020,228,0 chrV 194686 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=95;Dels=0.00;FS=2.972;HaplotypeScore=14.3447;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.808;QD=15.20;ReadPosRankSum=2.397;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1477,168,0 chrV 195290 . G T 1833 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.52;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1866,207,0 chrV 195341 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.45;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2309,252,0 chrV 195356 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=6.892;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.620;QD=16.84;ReadPosRankSum=2.389;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2071,234,0 chrV 195368 . C G 2190 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.88;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2223,249,0 chrV 195440 . A G 2252 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.47;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2285,255,0 chrV 195529 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1455;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.196;QD=18.12;ReadPosRankSum=1.612;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,114:122:99:2244,249,0 chrV 195746 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.63;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1958,222,0 chrV 195765 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=92;Dels=0.00;FS=5.890;HaplotypeScore=8.4387;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.580;QD=16.42;ReadPosRankSum=2.898;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:3,87:92:99:1544,177,0 chrV 195830 . T G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.666;HaplotypeScore=8.9393;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.437;QD=18.44;ReadPosRankSum=1.667;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2024,237,0 chrV 195872 . G C 1877 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.71;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1910,210,0 chrV 195875 . T C 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.478;QD=17.51;ReadPosRankSum=1.666;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1872,210,0 chrV 195975 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.5196;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.29;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1972,219,0 chrV 196190 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=1.227;QD=17.83;ReadPosRankSum=1.624;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1745,198,0 chrV 196271 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.7176;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.70;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2023,216,0 chrV 196352 . T C 681 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=13.62;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:714,84,0 chrV 196355 . T C 726 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=13.96;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:759,84,0 chrV 196385 . A G 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.181;QD=10.81;ReadPosRankSum=1.681;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:87:768,87,0 chrV 196391 . G A 821 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=11.56;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:96:854,96,0 chrV 196478 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.68;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1041,117,0 chrV 196526 . C T 901 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.00;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:934,102,0 chrV 196529 . A T 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-1.025;QD=15.29;ReadPosRankSum=1.662;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:93:813,93,0 chrV 196554 . T C 707 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=13.60;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:87:740,87,0 chrV 196708 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.85;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1838,207,0 chrV 196832 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.53;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:96:867,96,0 chrV 196983 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.97;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,141,0 chrV 196986 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.37;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1230,135,0 chrV 197103 . T C 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=71;Dels=0.00;FS=7.279;HaplotypeScore=8.5337;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.191;QD=17.49;ReadPosRankSum=2.381;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1275,144,0 chrV 197145 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.49;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1301,141,0 chrV 197322 . A G 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=5.301;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.142;QD=19.08;ReadPosRankSum=0.142;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1216,135,0 chrV 197352 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.68;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1439,162,0 chrV 197415 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.16;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1472,171,0 chrV 197493 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.37;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1724,186,0 chrV 197574 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.3549;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.71;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1689,183,0 chrV 197916 . C A 1258 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.06;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1291,144,0 chrV 198126 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.19;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1855,201,0 chrV 198538 . T C 883 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:916,102,0 chrV 198629 . A G 908 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:99:941,105,0 chrV 198669 . G T 1156 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.81;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1189,135,0 chrV 198671 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.42;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1221,135,0 chrV 198680 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.89;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1204,138,0 chrV 198865 . A G 894 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:927,102,0 chrV 199099 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.02;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2473,276,0 chrV 199202 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.50;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2595,282,0 chrV 199328 . T C 1642 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.61;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1675,189,0 chrV 199354 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.95;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1757,195,0 chrV 199687 . C T 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.303;HaplotypeScore=3.8494;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.640;QD=23.79;ReadPosRankSum=0.000;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2222,223,0 chrV 200053 . T C 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=74;Dels=0.00;FS=4.654;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.736;QD=18.05;ReadPosRankSum=1.685;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1369,156,0 chrV 200245 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1826,204,0 chrV 200737 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1866,201,0 chrV 200851 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1726,186,0 chrV 200908 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.35;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2446,279,0 chrV 201055 . G A 3004 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.0091;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3037,330,0 chrV 201582 . T G 2524 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.87;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2557,294,0 chrV 201834 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.30;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1545,168,0 chrV 201879 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:77:99:1434,165,0 chrV 202172 . T A 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.730;QD=21.48;ReadPosRankSum=1.607;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1837,204,0 chrV 202232 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6286;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.12;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1836,198,0 chrV 202285 . T C 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.670;QD=20.18;ReadPosRankSum=1.670;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1163,129,0 chrV 202470 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2799;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.98;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2239,243,0 chrV 203211 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.97;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1291,147,0 chrV 203226 . T C 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.161;QD=15.66;ReadPosRankSum=2.235;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1129,132,0 chrV 203238 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.54;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1331,147,0 chrV 203277 . T C 897 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=15.20;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:930,105,0 chrV 203996 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.72;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1525,168,0 chrV 204261 . T C 2162 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5438;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.41;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2195,249,0 chrV 204288 . G C 1592 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.09;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1625,180,0 chrV 204525 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2444,267,0 chrV 204636 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.32;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1699,186,0 chrV 205086 . T G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.690;QD=22.31;ReadPosRankSum=1.242;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2576,268,0 chrV 205225 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.7579;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.16;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1768,189,0 chrV 206666 . G T 1669 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.13;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1702,192,0 chrV 206836 . G C 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.71;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,94:99:99:2083,228,0 chrV 207117 . C A 1624 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8351;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1657,189,0 chrV 207156 . A G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.226;QD=20.89;ReadPosRankSum=1.657;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:994,111,0 chrV 207211 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.35;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1136,123,0 chrV 207213 . T A 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.681;QD=19.46;ReadPosRankSum=1.485;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1123,123,0 chrV 207250 . G C 1979 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=17.36;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2012,234,0 chrV 207285 . A C 2416 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=17.64;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2449,270,0 chrV 207299 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.26;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2188,243,0 chrV 207304 . C G 2142 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=19.12;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2175,243,0 chrV 207328 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.18;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1184,129,0 chrV 209333 . G A 2391 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2424,261,0 chrV 209424 . A G 2427 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.96;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2460,282,0 chrV 209654 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6759;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.17;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2671,288,0 chrV 209778 . A G 2502 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.03;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2535,288,0 chrV 209849 . T C 2527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=134;Dels=0.00;FS=3.043;HaplotypeScore=16.2570;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.174;QD=18.86;ReadPosRankSum=2.413;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2560,285,0 chrV 210347 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.155;QD=18.77;ReadPosRankSum=1.675;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1178,132,0 chrV 210614 . C A 1479 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.26;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1512,165,0 chrV 210722 . G A 2684 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2717,306,0 chrV 210793 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.47;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1622,183,0 chrV 211134 . G T 2579 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.67;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2612,285,0 chrV 211559 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.75;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1475,168,0 chrV 211626 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1721,189,0 chrV 211770 . C A 1012 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=14.67;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1045,117,0 chrV 212585 . C A 1609 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.4876;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1642,177,0 chrV 212901 . A G 1117 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.93;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1150,129,0 chrV 213244 . G A 644 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=16.95;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:75:677,75,0 chrV 213277 . T A 578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.103;QD=17.52;ReadPosRankSum=1.628;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:69:611,69,0 chrV 213929 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.75;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2360,258,0 chrV 214752 . G T 1448 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.88;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1481,165,0 chrV 214872 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.867;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=1.054;QD=21.27;ReadPosRankSum=1.694;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1990,228,0 chrV 214893 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.61;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1950,216,0 chrV 215059 . G C 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.61;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1445,162,0 chrV 215084 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.90;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1299,147,0 chrV 215137 . T C 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=4.431;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.081;QD=17.60;ReadPosRankSum=1.692;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1547,171,0 chrV 215203 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=15.02;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1430,156,0 chrV 215227 . A G 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.801;QD=17.04;ReadPosRankSum=1.695;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1618,183,0 chrV 215441 . A G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=103;Dels=0.00;FS=9.374;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.084;QD=21.28;ReadPosRankSum=2.401;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2225,252,0 chrV 215491 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.72;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1923,210,0 chrV 216589 . C G 1056 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.20;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1089,123,0 chrV 216618 . G C 825 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=17.19;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:858,99,0 chrV 216640 . G A 633 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=14.72;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:666,72,0 chrV 216696 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.83;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1043,111,0 chrV 216724 . C T 1059 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.71;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1092,117,0 chrV 216733 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=14.92;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1212,135,0 chrV 216970 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.64;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1867,210,0 chrV 217039 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.558;QD=22.37;ReadPosRankSum=1.674;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1353,153,0 chrV 217204 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.58;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1371,153,0 chrV 217279 . T G 1515 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.25;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1548,174,0 chrV 217294 . T A 1463 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.52;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1496,162,0 chrV 217418 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.60;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:860,93,0 chrV 217471 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.74;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:783,87,0 chrV 217536 . A G 1098 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.53;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1131,126,0 chrV 217777 . T C 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.042;QD=21.34;ReadPosRankSum=1.648;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:908,105,0 chrV 218012 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.81;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1407,150,0 chrV 218129 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1445,159,0 chrV 218253 . A C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.056;QD=21.48;ReadPosRankSum=-0.042;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1794,210,0 chrV 218489 . C G 1406 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.68;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1439,162,0 chrV 218938 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.32;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1907,207,0 chrV 218942 . T C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-0.264;QD=19.25;ReadPosRankSum=1.694;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1862,210,0 chrV 219111 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.74;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2098,237,0 chrV 219227 . C T 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.879;QD=17.87;ReadPosRankSum=1.682;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1284,144,0 chrV 219230 . T C 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.879;QD=17.90;ReadPosRankSum=1.531;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1268,144,0 chrV 219256 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=14.92;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1152,132,0 chrV 219281 . G A 1070 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=14.27;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1103,120,0 chrV 219342 . C A 1609 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.74;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1642,177,0 chrV 219410 . A T 1505 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1538,168,0 chrV 219603 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.14;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1593,177,0 chrV 219608 . T C 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=83;Dels=0.00;FS=2.616;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.445;QD=15.96;ReadPosRankSum=2.914;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,79:83:99:1358,137,0 chrV 219648 . C A 2662 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.43;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2695,291,0 chrV 219746 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.279;QD=22.30;ReadPosRankSum=1.635;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2419,270,0 chrV 220036 . C T 3211.99 PASS AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=16.1818;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.27;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,182:186:99:3245,351,0 chrV 220108 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.39;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2015,219,0 chrV 220406 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.51;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1797,198,0 chrV 220973 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.22;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:926,105,0 chrV 221538 . T G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.014;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.512;QD=20.95;ReadPosRankSum=1.677;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1353,153,0 chrV 221651 . C A 1055 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.53;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1088,123,0 chrV 221686 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.58;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1377,150,0 chrV 221810 . C A 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=50.2584;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.31;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,156,0 chrV 221826 . A C 55.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.050;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=58.1351;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=1.566;QD=0.83;ReadPosRankSum=1.455;SB=-6.515e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:12:88,12,0 chrV 221992 . T G 1095 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.80;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1128,126,0 chrV 222196 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.47;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1957,216,0 chrV 222207 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.24;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1861,207,0 chrV 222282 . T C 947 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=14.80;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:980,114,0 chrV 222293 . A C 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.758;QD=15.52;ReadPosRankSum=1.678;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1026,114,0 chrV 222394 . A G 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.152;QD=17.14;ReadPosRankSum=1.672;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1010,111,0 chrV 222430 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=15.46;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:868,99,0 chrV 222472 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=16.30;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:913,99,0 chrV 222592 . T A 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=5.216;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.506;QD=21.33;ReadPosRankSum=1.671;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2465,267,0 chrV 222646 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.50;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:2242,243,0 chrV 222725 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.33;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1128,126,0 chrV 222851 . T C 764 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=16.61;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:797,90,0 chrV 222941 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.53;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1029,114,0 chrV 223004 . G A 965 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2818;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=14.62;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:998,108,0 chrV 223022 . G C 756 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=12.19;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:87:789,87,0 chrV 223173 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=29.3227;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=12.91;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:588,66,0 chrV 223251 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=-1.017;QD=16.23;ReadPosRankSum=1.694;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1526,177,0 chrV 223252 . C A 1602 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.41;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1635,177,0 chrV 223697 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.78;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2015,219,0 chrV 224276 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.6808;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1474,171,0 chrV 224681 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.70;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1412,156,0 chrV 225229 . C T 1054 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1087,123,0 chrV 225263 . A G 967 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1000,114,0 chrV 226704 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.67;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1469,162,0 chrV 226861 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1617,171,0 chrV 227104 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.84;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1179,129,0 chrV 227105 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.60;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1207,129,0 chrV 227128 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.75;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1008,108,0 chrV 227242 . T C 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=11.7423;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.299;QD=22.32;ReadPosRankSum=1.670;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1305,147,0 chrV 227272 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.16;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1120,120,0 chrV 227327 . T C 742 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=15.46;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:775,87,0 chrV 227341 . T C 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=6.422;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.214;QD=16.79;ReadPosRankSum=2.362;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:973,108,0 chrV 227401 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.22;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1688,189,0 chrV 227534 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.77;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:926,105,0 chrV 227640 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.03;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1335,150,0 chrV 227836 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.15;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1849,207,0 chrV 228004 . G T 1354 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1387,153,0 chrV 228112 . G A 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=5.082;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.717;QD=20.05;ReadPosRankSum=1.553;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1216,138,0 chrV 228115 . A C 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=10.336;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.021;QD=20.81;ReadPosRankSum=2.365;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1261,138,0 chrV 228367 . A T 2651 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.09;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2684,297,0 chrV 228711 . A G 1397 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.63;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1430,165,0 chrV 228738 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.55;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1489,162,0 chrV 228774 . A G 2142 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0419;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=16.60;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2175,243,0 chrV 229119 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.30;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2083,231,0 chrV 229265 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=7.095;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.581;QD=21.75;ReadPosRankSum=2.336;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2404,276,0 chrV 229493 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.83;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2066,225,0 chrV 229569 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=120;Dels=0.00;FS=9.365;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.168;QD=18.34;ReadPosRankSum=2.807;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2234,252,0 chrV 229595 . A G 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=3.512;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.732;QD=18.22;ReadPosRankSum=1.701;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2037,231,0 chrV 229778 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.53;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1633,180,0 chrV 229938 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=92;Dels=0.00;FS=11.728;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.088;QD=18.45;ReadPosRankSum=2.836;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1730,198,0 chrV 230010 . T C 2442 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9241;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.52;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2475,279,0 chrV 230406 . T C 2041 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=15.46;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2074,240,0 chrV 230421 . C T 2274 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=16.36;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2307,252,0 chrV 230482 . A T 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.8311;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.535;QD=14.63;ReadPosRankSum=0.748;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,162:163:99:2418,264,0 chrV 230583 . A G 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=70;Dels=0.00;FS=3.203;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.276;QD=15.24;ReadPosRankSum=1.632;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1100,126,0 chrV 230884 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.50;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1495,162,0 chrV 230909 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.21;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1921,207,0 chrV 231027 . A T 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=100;Dels=0.00;FS=13.418;HaplotypeScore=5.8993;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.051;QD=22.65;ReadPosRankSum=2.807;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2298,252,0 chrV 231096 . C G 2272 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.42;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2305,264,0 chrV 231382 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=13.82;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1609,177,0 chrV 231408 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1162;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=16.71;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1721,186,0 chrV 231721 . G A 1350 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.75;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1383,156,0 chrV 231889 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.42;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1661,189,0 chrV 231897 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.01;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1662,186,0 chrV 232000 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.34;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1463,165,0 chrV 232335 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.05;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1617,174,0 chrV 232348 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.524;QD=16.60;ReadPosRankSum=1.692;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1477,165,0 chrV 232364 . G C 1352 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=16.49;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1385,156,0 chrV 232392 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=16.97;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1306,141,0 chrV 232541 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.97;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1648,177,0 chrV 232580 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.57;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1576,183,0 chrV 232869 . A T 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.404;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.000;QD=20.09;ReadPosRankSum=1.698;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2082,225,0 chrV 232874 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.40;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1954,222,0 chrV 233255 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=5.075;HaplotypeScore=6.4851;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.655;QD=20.22;ReadPosRankSum=1.685;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1570,174,0 chrV 233356 . A G 1094 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1127,126,0 chrV 233446 . C A 1026 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.12;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1059,117,0 chrV 234239 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1141,123,0 chrV 234299 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1174,135,0 chrV 234626 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.99;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1748,198,0 chrV 234749 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0765;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.27;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1522,168,0 chrV 234931 . G A 299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.991;DP=103;Dels=0.00;FS=18.880;HaplotypeScore=169.7976;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.247;QD=2.90;ReadPosRankSum=-7.391;SB=-4.400e+01 GT:AD:DP:GQ:PL 1/1:77,26:103:36:332,36,0 chrV 235117 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.50;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1222,138,0 chrV 235493 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.74;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1457,162,0 chrV 235495 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.35;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1446,162,0 chrV 235773 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=82;Dels=0.00;FS=13.259;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.533;QD=20.62;ReadPosRankSum=2.389;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1724,192,0 chrV 235812 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.37;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1935,216,0 chrV 236202 . A G 3615.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=180;Dels=0.00;FS=9.858;HaplotypeScore=12.2826;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.313;QD=20.08;ReadPosRankSum=2.961;SB=-2.123e+03 GT:AD:DP:GQ:PL 1/1:3,177:180:99:3615,402,0 chrV 236672 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.43;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2429,261,0 chrV 236916 . T C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.191;QD=18.65;ReadPosRankSum=2.242;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1357,153,0 chrV 237168 . T A 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.253;DP=94;Dels=0.00;FS=5.418;HaplotypeScore=4.8967;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.032;QD=17.89;ReadPosRankSum=1.695;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1715,173,0 chrV 237393 . G A 732 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.77;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:765,84,0 chrV 237481 . G C 1405 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.66;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1438,165,0 chrV 238052 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.01;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1672,180,0 chrV 238604 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.31;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1077,123,0 chrV 238676 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.81;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:622,69,0 chrV 239036 . T C 835 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.15;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:868,96,0 chrV 239078 . G T 1123 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1156,123,0 chrV 239206 . T C 963 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.65;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:996,111,0 chrV 239238 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.2976;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.48;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:975,105,0 chrV 239577 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.15;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1182,138,0 chrV 239600 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.35;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1417,153,0 chrV 239782 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.54;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:794,87,0 chrV 239810 . G C 971 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.66;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1004,111,0 chrV 239875 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.68;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:2018,231,0 chrV 240009 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.74;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1511,165,0 chrV 240035 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.34;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1292,144,0 chrV 240086 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.07;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1262,138,0 chrV 240087 . C A 1243 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.01;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1276,141,0 chrV 240100 . T G 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=85;Dels=0.00;FS=5.012;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-0.607;QD=14.12;ReadPosRankSum=3.726;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1233,141,0 chrV 240196 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.38;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1700,189,0 chrV 240293 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.62;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2385,261,0 chrV 240570 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.547;QD=21.68;ReadPosRankSum=1.516;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2461,276,0 chrV 240731 . G A 3596.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=23.66;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3596,396,0 chrV 240764 . G A 3070 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9961;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.74;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3103,342,0 chrV 240818 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.2776;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.20;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2241,252,0 chrV 240999 . T C 2494 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.33;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2527,285,0 chrV 241047 . A G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.2742;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=-1.395;QD=14.92;ReadPosRankSum=2.922;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:3,112:116:99:1764,198,0 chrV 241059 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.3786;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=14.13;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1630,180,0 chrV 241084 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.68;MQ0=0;QD=13.06;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1456,159,0 chrV 241100 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=-1.319;QD=14.23;ReadPosRankSum=1.669;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1598,180,0 chrV 241109 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=13.91;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1521,168,0 chrV 241256 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.95;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1304,150,0 chrV 241325 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1048;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.51;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1613,174,0 chrV 241371 . A G 1653 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.19;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1686,189,0 chrV 241465 . A T 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=1.260;QD=21.75;ReadPosRankSum=1.575;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:990,111,0 chrV 241759 . C T 506 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.24;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:539,57,0 chrV 241777 . T C 397 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.05;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:430,48,0 chrV 241799 . C A 353 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.65;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:386,42,0 chrV 241849 . G A 187.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=11.69;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,15:16:24:220,24,0 chrV 241921 . C A 551 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.50;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:63:584,63,0 chrV 241980 . G A 1387 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=21.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1420,153,0 chrV 242159 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=21.98;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1220,138,0 chrV 242167 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=17.78;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1171,129,0 chrV 242361 . C G 1801 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=16.99;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1834,207,0 chrV 242385 . A T 1806 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;QD=14.22;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1839,198,0 chrV 242413 . T C 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.396;DP=140;Dels=0.00;FS=9.222;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;MQRankSum=-0.569;QD=11.99;ReadPosRankSum=3.358;SB=-1.738e+03 GT:AD:DP:GQ:PL 1/1:4,136:140:99:1712,189,0 chrV 242415 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.01;FS=0.000;HaplotypeScore=2.9277;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=11.47;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1627,183,0 chrV 242456 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=124;Dels=0.00;FS=6.198;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=-2.430;QD=9.83;ReadPosRankSum=2.410;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:1252,141,0 chrV 242461 . T A 1424 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=10.63;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1457,156,0 chrV 242468 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=9.81;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:1298,147,0 chrV 242472 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=9.84;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1194,141,0 chrV 242481 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=10.98;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1384,153,0 chrV 242693 . G A 35.97 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=0.37;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:9:68,9,0 chrV 242834 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=16.40;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2247,249,0 chrV 242907 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=19.15;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2197,243,0 chrV 242916 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=18.80;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2045,222,0 chrV 242940 . A T 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.970;QD=15.18;ReadPosRankSum=1.628;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1551,168,0 chrV 243058 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.2407;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.25;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1712,195,0 chrV 243090 . C G 2259 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.54;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2292,261,0 chrV 243157 . A C 2730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=133;Dels=0.00;FS=2.748;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.046;QD=20.53;ReadPosRankSum=2.413;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2763,312,0 chrV 243299 . T C 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=4.357;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=0.577;QD=18.33;ReadPosRankSum=1.655;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1683,189,0 chrV 243377 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.78;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1404,156,0 chrV 243657 . A T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=0.296;QD=0.94;ReadPosRankSum=2.166;SB=1.87 GT:AD:DP:GQ:PL 1/1:7,11:18:6:48,6,0 chrV 243774 . A G 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;DP=19;Dels=0.00;FS=2.754;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.391;QD=16.58;ReadPosRankSum=2.627;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:3,16:19:39:348,39,0 chrV 243892 . A T 1221 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1254,138,0 chrV 243969 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.12;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1813,204,0 chrV 243981 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.27;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1458,156,0 chrV 244404 . T A 1711 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.82;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1744,195,0 chrV 244650 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.2542;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.09;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:96:886,96,0 chrV 244851 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1255,144,0 chrV 245272 . G T 1583 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.85;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1616,177,0 chrV 245855 . G C 2664 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.6148;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.84;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,117:122:99:2697,306,0 chrV 245940 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.66;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1870,207,0 chrV 246045 . T C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.204;QD=20.99;ReadPosRankSum=1.666;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2237,255,0 chrV 246194 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=17.38;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2014,225,0 chrV 246195 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=17.10;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1982,219,0 chrV 246498 . A C 1324 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.02;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1357,153,0 chrV 246542 . C G 1884 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.43;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1917,216,0 chrV 246588 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.69;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2040,234,0 chrV 246604 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.66;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:83:99:1582,177,0 chrV 246625 . T G 1395 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.37;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1428,159,0 chrV 246716 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.75;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1021,111,0 chrV 246845 . G C 1092 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.60;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1125,126,0 chrV 246906 . G A 715 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=14.59;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:748,81,0 chrV 246907 . G A 696 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=14.50;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:729,78,0 chrV 247093 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.24;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1523,165,0 chrV 247147 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.66;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1468,162,0 chrV 247282 . T C 1265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.990;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=1.730;QD=17.57;ReadPosRankSum=2.381;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1298,147,0 chrV 247707 . A T 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=5.705;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.130;QD=15.55;ReadPosRankSum=1.620;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1479,162,0 chrV 247710 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=14.73;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1447,159,0 chrV 248286 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=91;Dels=0.00;FS=5.497;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.189;QD=20.21;ReadPosRankSum=2.923;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1872,213,0 chrV 248460 . A G 668 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=6.61;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:81:701,81,0 chrV 248691 . T G 1589 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=22.70;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1622,189,0 chrV 248777 . G T 1879 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=24.40;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1912,207,0 chrV 248822 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.48;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1644,183,0 chrV 248828 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.43;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1545,171,0 chrV 248843 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.95;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1529,174,0 chrV 248974 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=98;Dels=0.00;FS=3.847;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.196;QD=20.80;ReadPosRankSum=1.696;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2071,231,0 chrV 249012 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.600;QD=19.32;ReadPosRankSum=1.632;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2042,228,0 chrV 249123 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.87;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1914,204,0 chrV 249496 . A C 3052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-0.899;QD=22.44;ReadPosRankSum=1.680;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:1,132:136:99:3085,348,0 chrV 249511 . T C 2975 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=22.71;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3008,345,0 chrV 249613 . C T 2751 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=21.16;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2784,315,0 chrV 249705 . C A 3708.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=22.20;SB=-1.976e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3708,411,0 chrV 249798 . G T 1329 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.53;MQ0=0;QD=17.72;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1362,147,0 chrV 249807 . C G 1295 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=17.04;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1328,147,0 chrV 249825 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=15.64;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1362,153,0 chrV 249834 . T A 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=-1.338;QD=18.08;ReadPosRankSum=1.688;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1461,162,0 chrV 249845 . T G 1469 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=18.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1502,171,0 chrV 249884 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.04;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1004,105,0 chrV 249887 . T C 937 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.04;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:970,108,0 chrV 249901 . G A 642 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.27;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:72:675,72,0 chrV 249912 . T A 510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.133;QD=13.08;ReadPosRankSum=1.111;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:60:543,60,0 chrV 249917 . A T 535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.031;QD=13.37;ReadPosRankSum=2.327;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,38:40:60:568,60,0 chrV 249924 . A T 422 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=27.7998;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.79;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:51:455,51,0 chrV 250277 . A G 224 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.9523;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=6.40;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:257,30,0 chrV 250508 . A T 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=0.400;QD=20.48;ReadPosRankSum=1.626;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1364,150,0 chrV 250547 . C A 1129 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=17.11;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1162,129,0 chrV 250573 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=20.90;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1078,117,0 chrV 250605 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=21.51;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1087,123,0 chrV 250692 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.83;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1534,174,0 chrV 251006 . C G 1240 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.00;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1273,147,0 chrV 251036 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.63;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1039,114,0 chrV 251267 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=21.74;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1598,174,0 chrV 251279 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.26;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1500,168,0 chrV 251309 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.83;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1137,123,0 chrV 251322 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.38;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1136,126,0 chrV 251700 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.26;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1092,120,0 chrV 251702 . A G 1091 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.48;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1124,126,0 chrV 251721 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.12;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1197,129,0 chrV 251925 . T A 926 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.70;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:959,108,0 chrV 252051 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=22.38;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1376,150,0 chrV 252072 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.74;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1044,114,0 chrV 252103 . C A 1069 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=14.45;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1102,123,0 chrV 253071 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.34;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2227,240,0 chrV 253377 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.68;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1507,165,0 chrV 253920 . T G 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=90.8806;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.475;QD=0.69;ReadPosRankSum=2.347;SB=-3.995e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:12:99,12,0 chrV 253929 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.45;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2092,240,0 chrV 254010 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.22;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1812,198,0 chrV 254021 . T G 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.29;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1656,189,0 chrV 254085 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.00;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1724,195,0 chrV 254274 . T A 2434 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.45;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2467,276,0 chrV 254391 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=13.0928;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.21;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1474,159,0 chrV 254589 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.71;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3167,339,0 chrV 254651 . G T 1961 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1994,216,0 chrV 254694 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.83;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1654,180,0 chrV 254736 . C T 1083 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1116,120,0 chrV 254798 . G C 1395 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1428,159,0 chrV 254945 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3780;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.68;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2218,240,0 chrV 255120 . A C 1267 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.04;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1300,144,0 chrV 255344 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.66;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2078,228,0 chrV 256032 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=21.29;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1353,150,0 chrV 256048 . G C 1011 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.82;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1044,117,0 chrV 256159 . T C 495 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=11.25;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:60:528,60,0 chrV 256194 . T G 1216 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.43;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1249,141,0 chrV 256810 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4357;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.51;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2084,240,0 chrV 258068 . T A 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=76;Dels=0.00;FS=6.329;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.200;QD=17.97;ReadPosRankSum=2.247;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1399,134,0 chrV 258290 . G T 373 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.95;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:406,45,0 chrV 258479 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=16.95;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:779,87,0 chrV 258489 . C T 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.594;QD=15.38;ReadPosRankSum=1.594;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:87:802,87,0 chrV 258499 . T G 756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-0.513;QD=14.00;ReadPosRankSum=1.668;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:90:789,90,0 chrV 258549 . A G 995 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=14.21;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1028,117,0 chrV 258552 . A G 901 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=13.06;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:934,105,0 chrV 258561 . A T 876 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=15.10;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:909,102,0 chrV 258666 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1978,219,0 chrV 258700 . A C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=6.284;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.795;QD=23.05;ReadPosRankSum=1.691;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1992,225,0 chrV 259115 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1873,207,0 chrV 259547 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.23;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1773,204,0 chrV 259762 . T A 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=88;Dels=0.01;FS=6.173;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;MQRankSum=-1.798;QD=17.95;ReadPosRankSum=2.308;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1613,174,0 chrV 259785 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=18.01;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1528,171,0 chrV 259828 . A T 2001 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.48;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2034,219,0 chrV 260054 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=19.07;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1139,126,0 chrV 260078 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=19.44;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1180,132,0 chrV 260094 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.20;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1107,123,0 chrV 260120 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.45;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1102,120,0 chrV 260327 . A G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=0.162;QD=17.03;ReadPosRankSum=1.678;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1123,126,0 chrV 260346 . T C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.346;QD=19.37;ReadPosRankSum=1.617;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1195,138,0 chrV 260434 . T A 715 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.34;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:748,81,0 chrV 260511 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.39;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1155,126,0 chrV 260867 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.95;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:2229,243,0 chrV 260905 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.38;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2190,237,0 chrV 261130 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.89;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1525,165,0 chrV 261138 . T G 1508 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.58;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1541,171,0 chrV 261193 . A T 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.09;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1404,150,0 chrV 261299 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.56;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:913,99,0 chrV 261345 . A C 480 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.78;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:513,57,0 chrV 261787 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.72;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1250,138,0 chrV 261965 . C T 3673.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.2391;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.32;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3673,408,0 chrV 262023 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.76;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2167,249,0 chrV 262033 . T A 2029 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.5300;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.61;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2062,234,0 chrV 262042 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.19;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1943,216,0 chrV 262212 . A G 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.610;QD=22.29;ReadPosRankSum=1.699;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2373,264,0 chrV 262462 . A T 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.435;QD=16.87;ReadPosRankSum=2.301;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1720,192,0 chrV 262797 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.39;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1680,189,0 chrV 262877 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.227;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.605;QD=19.49;ReadPosRankSum=1.690;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1651,189,0 chrV 263549 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1084,120,0 chrV 263978 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.97;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1312,150,0 chrV 264464 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.28;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1139,123,0 chrV 264478 . G A 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.192;QD=14.83;ReadPosRankSum=-0.632;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:967,105,0 chrV 264522 . T A 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=6.990;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.661;QD=18.36;ReadPosRankSum=1.669;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1043,111,0 chrV 264668 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=20.06;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1036,114,0 chrV 264717 . A T 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.109;QD=21.39;ReadPosRankSum=1.663;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1124,123,0 chrV 264738 . G T 1283 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.75;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1316,144,0 chrV 265533 . T C 952 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.14;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:985,111,0 chrV 265623 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.81;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1823,198,0 chrV 265681 . G T 2075 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.34;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2108,228,0 chrV 265809 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.75;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1257,135,0 chrV 265876 . G A 669 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.30;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:78:702,78,0 chrV 265913 . T A 549 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.93;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:63:582,63,0 chrV 265937 . T C 444 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=14.80;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:54:477,54,0 chrV 265995 . T C 386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=1.091;QD=14.30;ReadPosRankSum=0.449;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:48:419,48,0 chrV 265998 . C T 392 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.08;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:425,48,0 chrV 266021 . G A 657 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.64;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:690,75,0 chrV 266122 . A G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=11.139;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.400;QD=21.90;ReadPosRankSum=1.644;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,38:39:99:887,99,0 chrV 266266 . C T 265 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=15.59;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:33:298,33,0 chrV 266383 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=18.1858;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.26;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2504,267,0 chrV 266480 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.34;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2379,264,0 chrV 266551 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.10;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1922,216,0 chrV 266610 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.47;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2357,270,0 chrV 266722 . C A 3019 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.26;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3052,330,0 chrV 266773 . G A 3665.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=12.6602;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.69;SB=-2.012e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3665,399,0 chrV 266854 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=21.07;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2498,285,0 chrV 267025 . G A 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.494;QD=22.00;ReadPosRankSum=0.034;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2277,246,0 chrV 267040 . A G 2126 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.25;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2159,246,0 chrV 267067 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.44;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2191,237,0 chrV 267318 . T C 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.683;QD=20.89;ReadPosRankSum=1.669;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2373,276,0 chrV 267430 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.40;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1758,189,0 chrV 267673 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.96;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3202,348,0 chrV 267889 . T G 1731 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.11;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1764,198,0 chrV 268231 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.14;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1044,117,0 chrV 268713 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.27;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1979,213,0 chrV 268762 . G T 1515 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=17.02;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1548,168,0 chrV 268979 . T C 806 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.78;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:839,93,0 chrV 269034 . A C 827 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.80;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:860,96,0 chrV 269057 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=16.63;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:748,84,0 chrV 269064 . C T 629 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.98;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:662,72,0 chrV 269076 . T C 437 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=11.81;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:470,54,0 chrV 269109 . T A 313 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=7.45;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:39:346,39,0 chrV 269123 . G C 280 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=8.24;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:313,36,0 chrV 269126 . G T 242 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=6.91;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:275,30,0 chrV 269141 . A G 274 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=7.41;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:36:307,36,0 chrV 269239 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.22;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1064,117,0 chrV 269314 . A G 849 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.22;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:882,102,0 chrV 269407 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.45;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1717,201,0 chrV 269858 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.20;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1326,153,0 chrV 269918 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.512;QD=19.58;ReadPosRankSum=1.683;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1423,159,0 chrV 269982 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.66;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1438,156,0 chrV 270049 . A T 1338 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.58;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1371,150,0 chrV 270072 . T A 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=74;Dels=0.00;FS=2.621;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.874;QD=18.38;ReadPosRankSum=2.846;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:3,69:74:99:1393,156,0 chrV 270213 . A T 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4570;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.354;QD=20.36;ReadPosRankSum=1.693;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1825,198,0 chrV 270466 . C A 923 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=14.42;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:956,105,0 chrV 271135 . T A 1603 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.31;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1636,177,0 chrV 271177 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.65;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1211,132,0 chrV 271202 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.90;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:988,111,0 chrV 271215 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.02;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:889,99,0 chrV 271319 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=17.34;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1212,135,0 chrV 271332 . A G 1000 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=16.95;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1033,117,0 chrV 271333 . T A 1071 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=18.15;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1104,120,0 chrV 271334 . T C 1016 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=17.22;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1049,120,0 chrV 271367 . G A 961 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=15.75;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:994,108,0 chrV 271374 . G A 562 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=11.02;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:595,66,0 chrV 271409 . G A 786 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=14.29;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:819,90,0 chrV 271694 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.73;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2216,240,0 chrV 271934 . T C 2890 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.1758;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.89;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2923,324,0 chrV 272025 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.65;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1939,216,0 chrV 272169 . T C 2883 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.25;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2916,327,0 chrV 272256 . T A 1475 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.67;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1508,165,0 chrV 272259 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.56;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1500,168,0 chrV 272709 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.28;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1209,135,0 chrV 273587 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.01;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2260,246,0 chrV 273596 . G C 1967 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.07;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2000,222,0 chrV 273721 . T A 2475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.925;QD=23.80;ReadPosRankSum=1.665;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2508,273,0 chrV 273763 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.618;QD=22.24;ReadPosRankSum=1.694;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2057,231,0 chrV 274193 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=17.67;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1111,120,0 chrV 274764 . C A 1794 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.88;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1827,201,0 chrV 275154 . T C 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.851;QD=19.29;ReadPosRankSum=1.615;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1171,132,0 chrV 275181 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.33;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:922,102,0 chrV 275403 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.45;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1959,225,0 chrV 275984 . T C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=91;Dels=0.00;FS=22.023;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=-5.363;QD=0.36;ReadPosRankSum=-2.831;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,11:91:63:63,0,1623 chrV 276209 . C A 3374.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.18;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3374,357,0 chrV 276585 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.951;QD=20.73;ReadPosRankSum=2.098;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1774,201,0 chrV 276619 . G T 1423 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.62;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1456,165,0 chrV 276757 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.30;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1809,207,0 chrV 276799 . A C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.433;QD=17.01;ReadPosRankSum=1.689;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1394,159,0 chrV 276998 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.77;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1861,201,0 chrV 277003 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.34;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1793,192,0 chrV 277931 . A G 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;DP=94;Dels=0.00;FS=4.291;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=0;MQRankSum=-0.627;QD=8.57;ReadPosRankSum=1.658;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:839,99,0 chrV 277947 . A G 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.69;MQ0=0;QD=2.64;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,69:69:24:215,24,0 chrV 277954 . G A 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=0;QD=2.92;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:24:223,24,0 chrV 277956 . A G 188.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.291;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=0;MQRankSum=0.812;QD=2.89;ReadPosRankSum=1.678;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:1,63:65:24:221,24,0 chrV 277969 . T C 420 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=6.56;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:51:453,51,0 chrV 277972 . C T 443 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=7.15;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:51:476,51,0 chrV 278456 . C T 2631 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.08;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2664,291,0 chrV 278612 . A C 2152 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.74;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2185,249,0 chrV 279216 . T C 2542 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.02;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2575,288,0 chrV 279267 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.19;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1998,222,0 chrV 279303 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1624,180,0 chrV 279413 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=14.84;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1116,126,0 chrV 279422 . T C 1132 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=15.09;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1165,132,0 chrV 279481 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.05;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1233,138,0 chrV 279886 . C T 2929 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.62;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2962,321,0 chrV 279907 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.68;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2353,261,0 chrV 280038 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5051;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.43;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1567,177,0 chrV 280050 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.866;QD=16.77;ReadPosRankSum=1.689;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1408,159,0 chrV 280218 . C T 3985.01 PASS AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.51;SB=-2.118e+03 GT:AD:DP:GQ:PL 1/1:0,177:177:99:3985,438,0 chrV 280712 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.68;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1708,192,0 chrV 280780 . T C 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=98;Dels=0.00;FS=9.454;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.140;QD=19.23;ReadPosRankSum=2.348;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1918,213,0 chrV 280826 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.69;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1802,198,0 chrV 280959 . C T 735 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.50;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:768,96,0 chrV 281161 . C T 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2315;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.415;QD=17.17;ReadPosRankSum=-0.930;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:2162,243,0 chrV 281166 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.4429;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.30;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2265,252,0 chrV 281180 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.47;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2194,243,0 chrV 281370 . G C 1198 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.66;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1231,138,0 chrV 281418 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.31;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1525,162,0 chrV 281429 . A G 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.560;QD=19.71;ReadPosRankSum=1.630;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1373,153,0 chrV 281587 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.0320;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.395;QD=19.81;ReadPosRankSum=2.790;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1459,165,0 chrV 281645 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=15.86;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:969,105,0 chrV 281654 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.29;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:90:811,90,0 chrV 281802 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.873;QD=21.27;ReadPosRankSum=2.824;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:99:884,102,0 chrV 281939 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.83;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1059,117,0 chrV 282225 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.72;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1250,144,0 chrV 282297 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.32;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:894,102,0 chrV 282367 . A T 883 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:916,99,0 chrV 282633 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.852;QD=21.73;ReadPosRankSum=1.677;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1402,159,0 chrV 282737 . A C 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.41;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,219,0 chrV 282807 . G C 2236 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.50;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2269,255,0 chrV 282853 . C T 2359 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.84;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2392,258,0 chrV 282885 . G T 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DP=102;Dels=0.00;FS=3.554;HaplotypeScore=10.5307;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.596;QD=19.19;ReadPosRankSum=1.053;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1990,219,0 chrV 283424 . T C 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.046;DP=81;Dels=0.00;FS=9.222;HaplotypeScore=5.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.293;QD=14.67;ReadPosRankSum=-0.108;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1221,103,0 chrV 283533 . T G 1381 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.81;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1414,159,0 chrV 283654 . T G 1145 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1178,132,0 chrV 284061 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:661,72,0 chrV 284163 . C T 189.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.54;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:222,24,0 chrV 284190 . A T 182.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=10.71;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:215,24,0 chrV 284262 . G A 940 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:973,108,0 chrV 284386 . T A 121.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.32;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:154,18,0 chrV 284613 . T C 2056 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.467;QD=24.19;ReadPosRankSum=3.310;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,81:85:99:2089,237,0 chrV 284680 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.64;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1265,135,0 chrV 285101 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.83;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2155,246,0 chrV 285114 . G A 2787 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.0129;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.27;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2820,306,0 chrV 285220 . T G 2852 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.19;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2885,324,0 chrV 285738 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.61;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1970,222,0 chrV 286762 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.25;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1329,144,0 chrV 286966 . G T 1213 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=14.79;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1246,138,0 chrV 286967 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=14.91;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1300,141,0 chrV 287299 . G T 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=3.424;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.263;QD=20.24;ReadPosRankSum=-0.788;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:78:721,78,0 chrV 287375 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.37;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1389,156,0 chrV 287597 . T C 951 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.41;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:984,111,0 chrV 287599 . T G 878 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.29;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:911,102,0 chrV 287659 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.26;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:797,90,0 chrV 287674 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=15.34;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:708,81,0 chrV 287796 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.45;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1764,198,0 chrV 288301 . T C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.070;HaplotypeScore=9.6956;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.196;QD=20.44;ReadPosRankSum=1.696;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2036,228,0 chrV 288331 . C G 1788 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.43;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1821,204,0 chrV 288341 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.35;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1783,192,0 chrV 288745 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.47;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1898,216,0 chrV 289034 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.35;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2125,231,0 chrV 289087 . C G 1755 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.04;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.65;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1788,201,0 chrV 289088 . G T 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=87;Dels=0.00;FS=2.467;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.777;QD=20.56;ReadPosRankSum=2.471;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1822,198,0 chrV 289221 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.71;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1466,165,0 chrV 289706 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=22.18;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1719,195,0 chrV 289772 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.53;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1511,165,0 chrV 289889 . G A 768 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=7;QD=12.80;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:801,87,0 chrV 289908 . A G 423 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=8;MQRankSum=-1.732;QD=7.55;ReadPosRankSum=1.588;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:51:456,51,0 chrV 289958 . C T 836 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=71;Dels=0.00;FS=4.046;HaplotypeScore=4.2817;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=5;MQRankSum=0.840;QD=11.77;ReadPosRankSum=-1.575;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:96:869,96,0 chrV 290192 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=3;QD=19.80;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1498,162,0 chrV 290251 . C T 1694 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=4;QD=19.03;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1727,192,0 chrV 290513 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=15.79;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1170,132,0 chrV 290805 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.82;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1658,183,0 chrV 291118 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=77;Dels=0.00;FS=11.340;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.203;QD=20.57;ReadPosRankSum=2.906;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:3,72:77:99:1617,180,0 chrV 291268 . C A 3218.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.89;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3251,357,0 chrV 291705 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.77;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1358,156,0 chrV 291980 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.16;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1240,141,0 chrV 291988 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.76;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1290,144,0 chrV 293229 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.80;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1723,183,0 chrV 293301 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1616,174,0 chrV 293965 . A C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.680;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-0.148;QD=19.29;ReadPosRankSum=1.699;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2058,234,0 chrV 293991 . G C 2022 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.26;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2055,237,0 chrV 294112 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1303,144,0 chrV 294185 . C G 1687 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0144;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.09;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1720,195,0 chrV 294460 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1856,198,0 chrV 294573 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.58;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1247,144,0 chrV 294714 . T G 749 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=14.40;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:90:782,90,0 chrV 295241 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=14.41;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:955,105,0 chrV 296063 . A G 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3261;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.264;QD=19.47;ReadPosRankSum=1.657;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1844,210,0 chrV 296561 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.25;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1138,129,0 chrV 296659 . A C 1267 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1300,147,0 chrV 296717 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.79;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1405,162,0 chrV 297170 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.29;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1928,213,0 chrV 297515 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.15;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1619,177,0 chrV 298080 . T G 713 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=15.84;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:746,84,0 chrV 298190 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=65;Dels=0.00;FS=5.549;HaplotypeScore=4.2166;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.619;QD=21.22;ReadPosRankSum=1.675;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,60:65:99:1412,156,0 chrV 298538 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.92;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1518,168,0 chrV 298743 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.02;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1357,153,0 chrV 298831 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.52;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:69:99:1380,156,0 chrV 299219 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=16.83;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1346,153,0 chrV 299237 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.92;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1945,210,0 chrV 299438 . G C 1572 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.82;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1605,183,0 chrV 299873 . A C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=75;Dels=0.00;FS=2.989;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.750;QD=18.64;ReadPosRankSum=2.283;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1431,162,0 chrV 300317 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.69;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1707,189,0 chrV 300738 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.48;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2573,294,0 chrV 300974 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.86;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2372,261,0 chrV 301749 . A G 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.986;QD=21.66;ReadPosRankSum=1.679;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1441,165,0 chrV 301830 . G C 1719 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.21;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1752,195,0 chrV 301864 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=17.80;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:941,102,0 chrV 301867 . C A 907 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.44;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:940,102,0 chrV 301899 . C T 782 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.04;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:815,87,0 chrV 301962 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.29;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1415,159,0 chrV 301990 . T C 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.779;QD=21.71;ReadPosRankSum=1.689;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1770,201,0 chrV 302509 . T C 1964 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3228;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.89;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1997,228,0 chrV 302655 . T C 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.968;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.479;QD=23.10;ReadPosRankSum=2.359;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2551,285,0 chrV 302761 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2836,303,0 chrV 303277 . T A 2068 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.51;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2101,231,0 chrV 303371 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=52.8038;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.93;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1091,117,0 chrV 303374 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=54.0663;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.68;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1094,123,0 chrV 303475 . A G 665 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=10.90;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:78:698,78,0 chrV 303485 . T C 653 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=10.53;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:686,78,0 chrV 303487 . A G 629 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;MQRankSum=-1.562;QD=10.31;ReadPosRankSum=1.675;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:75:662,75,0 chrV 303494 . A T 552 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=8.90;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:63:585,63,0 chrV 303521 . T C 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;DP=40;Dels=0.00;FS=8.709;HaplotypeScore=28.7868;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.769;QD=7.35;ReadPosRankSum=2.327;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:39:327,39,0 chrV 303560 . C T 511 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.19;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:544,60,0 chrV 304335 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.01;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2256,246,0 chrV 304656 . C T 2234 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.9326;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.13;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2267,252,0 chrV 304936 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.02;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1497,165,0 chrV 305978 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.29;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2292,246,0 chrV 308135 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.39;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2244,243,0 chrV 308152 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.20;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2013,216,0 chrV 308268 . G T 2258 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.04;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2291,252,0 chrV 308710 . C T 2692 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.62;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2725,297,0 chrV 308835 . T C 2080 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.13;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2113,240,0 chrV 308891 . A G 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.893;QD=23.29;ReadPosRankSum=1.696;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2246,252,0 chrV 309004 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.1739;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.36;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2879,312,0 chrV 309040 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.845;QD=16.08;ReadPosRankSum=2.348;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:2,168:170:99:2766,315,0 chrV 309130 . C G 3823.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.36;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:3823,447,0 chrV 309170 . A G 2737 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.25;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2770,315,0 chrV 309616 . T A 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.128;QD=18.70;ReadPosRankSum=1.033;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2090,231,0 chrV 309961 . A T 1521 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.28;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1554,171,0 chrV 310175 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.2193;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.19;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2185,234,0 chrV 310540 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.20;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1953,219,0 chrV 311266 . A C 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=132;Dels=0.00;FS=2.590;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.039;QD=19.39;ReadPosRankSum=2.885;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:3,128:132:99:2593,291,0 chrV 311316 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.5649;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=2.228;QD=19.29;ReadPosRankSum=2.405;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:2,109:114:99:2232,255,0 chrV 311515 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.54;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1577,177,0 chrV 311837 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=16.72;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1521,168,0 chrV 311842 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.62;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1531,168,0 chrV 311853 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.15;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1390,159,0 chrV 311969 . A C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.547;QD=20.79;ReadPosRankSum=1.687;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1613,180,0 chrV 311996 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=14.61;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1070,117,0 chrV 312007 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=15.12;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1031,117,0 chrV 312115 . G A 804 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.14;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:837,90,0 chrV 312117 . T A 845 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=19.20;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:878,96,0 chrV 312125 . C T 853 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.39;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:886,96,0 chrV 312153 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.81;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:995,108,0 chrV 312176 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.73;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1489,162,0 chrV 312264 . T C 1595 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.27;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1628,186,0 chrV 312348 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.79;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1218,135,0 chrV 312350 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.74;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1215,135,0 chrV 312427 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.43;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1850,204,0 chrV 312465 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.91;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1830,204,0 chrV 312495 . A T 1482 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.58;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1515,165,0 chrV 312496 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.87;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1464,165,0 chrV 312538 . G T 1735 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.94;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1768,189,0 chrV 312677 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.31;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2415,261,0 chrV 312810 . C T 2712 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.55;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2745,297,0 chrV 312966 . G C 1944 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1977,222,0 chrV 313020 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=95;Dels=0.00;FS=3.153;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.056;QD=20.81;ReadPosRankSum=1.695;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2010,225,0 chrV 313100 . G T 2562 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.43;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2595,279,0 chrV 313106 . T C 2512 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.94;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2545,282,0 chrV 313206 . C A 2748 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.22;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2781,300,0 chrV 313344 . G C 1424 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.26;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1457,162,0 chrV 313373 . C A 1498 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.72;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1531,168,0 chrV 313542 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.658;QD=17.50;ReadPosRankSum=1.658;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1678,189,0 chrV 313619 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.19;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1426,159,0 chrV 313678 . G A 849 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.33;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:882,99,0 chrV 313976 . T C 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.173;QD=23.78;ReadPosRankSum=1.675;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1460,162,0 chrV 314015 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.33;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1153,129,0 chrV 314064 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.71;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1110,126,0 chrV 314126 . A T 1431 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.04;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=15.55;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1464,165,0 chrV 314127 . T A 1395 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.04;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=15.00;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1428,162,0 chrV 314149 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=14.70;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1576,171,0 chrV 314160 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=12.82;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1392,156,0 chrV 314287 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.63;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1612,177,0 chrV 314589 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.02;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2082,225,0 chrV 314777 . G T 1365 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1398,153,0 chrV 315416 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.70;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2268,249,0 chrV 315857 . T G 1702 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.8880;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.27;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1735,198,0 chrV 315976 . T A 594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=4.873;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.363;QD=13.81;ReadPosRankSum=1.652;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:69:627,69,0 chrV 316166 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.56;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1148,123,0 chrV 316681 . G C 1563 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=23.68;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1596,180,0 chrV 317040 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.85;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1998,222,0 chrV 317359 . A G 2094 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.94;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2127,240,0 chrV 317416 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.83;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1878,201,0 chrV 317740 . G C 1641 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.0685;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=18.65;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1674,192,0 chrV 317773 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=12.14;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1016,114,0 chrV 317776 . A C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.546;QD=14.32;ReadPosRankSum=1.637;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1078,120,0 chrV 318309 . T C 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=8.834;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.539;QD=19.56;ReadPosRankSum=2.381;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1422,159,0 chrV 318414 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.37;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1958,213,0 chrV 318769 . T A 1018 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=14.97;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1051,114,0 chrV 318778 . T C 1136 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.46;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1169,135,0 chrV 318824 . T C 2463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.171;QD=23.46;ReadPosRankSum=1.666;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2496,279,0 chrV 320301 . T C 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.207;QD=18.68;ReadPosRankSum=1.680;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1266,144,0 chrV 320889 . G T 1102 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.04;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1135,126,0 chrV 320982 . T A 948 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.31;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:981,108,0 chrV 321401 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.46;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1179,132,0 chrV 321483 . T C 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=4.949;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.855;QD=18.71;ReadPosRankSum=1.686;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1436,165,0 chrV 321624 . G T 2438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=1.279;QD=22.79;ReadPosRankSum=-0.178;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2471,267,0 chrV 321771 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.90;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1227,135,0 chrV 321779 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.03;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1223,135,0 chrV 321783 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.58;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1193,129,0 chrV 321832 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0113;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.03;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1025,114,0 chrV 321873 . T C 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=80;Dels=0.00;FS=6.189;HaplotypeScore=7.6249;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.304;QD=17.71;ReadPosRankSum=2.659;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1450,165,0 chrV 321889 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.75;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1589,180,0 chrV 321901 . G T 1669 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.14;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1702,189,0 chrV 321936 . T A 2024 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2344;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.15;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2057,228,0 chrV 321958 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.18;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1560,174,0 chrV 321977 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=16.69;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1268,144,0 chrV 321991 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.75;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1230,141,0 chrV 322222 . G C 1807 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.17;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1840,204,0 chrV 322554 . G C 1377 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.0752;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.18;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1410,159,0 chrV 322875 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.40;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1317,147,0 chrV 322970 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2548,279,0 chrV 323033 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.35;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1741,192,0 chrV 323117 . A C 1737 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4550;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.55;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1770,198,0 chrV 323195 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.6954;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.076;QD=19.96;ReadPosRankSum=1.696;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1929,216,0 chrV 323837 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.82;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1386,156,0 chrV 324121 . A G 814 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=16.61;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:847,96,0 chrV 324122 . C G 792 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=16.16;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:93:825,93,0 chrV 324181 . G A 632 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=14.70;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:72:665,72,0 chrV 324202 . A T 643 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.92;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:676,72,0 chrV 325346 . A G 2342 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.36;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2375,261,0 chrV 325661 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.17;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1356,150,0 chrV 325963 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=17.52;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:874,96,0 chrV 326290 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.60;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1231,135,0 chrV 326507 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.30;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1558,177,0 chrV 326711 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.94;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1217,138,0 chrV 326759 . A T 1104 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.44;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1137,123,0 chrV 326990 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.85;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1280,138,0 chrV 326999 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.36;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1309,144,0 chrV 327059 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0152;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.97;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1437,159,0 chrV 327363 . A C 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=4.130;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.472;QD=19.41;ReadPosRankSum=1.654;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:887,99,0 chrV 327452 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.10;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2006,222,0 chrV 327482 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=10.933;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.295;QD=16.68;ReadPosRankSum=2.335;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2185,246,0 chrV 327951 . C T 604 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=13.13;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:637,69,0 chrV 327970 . G A 485 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=12.12;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:518,57,0 chrV 328176 . C G 887 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.28;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:920,102,0 chrV 328271 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.45;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:852,93,0 chrV 328273 . C G 649 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=12.73;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:78:682,78,0 chrV 328773 . A G 4597.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=197;Dels=0.00;FS=4.388;HaplotypeScore=14.6573;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.608;QD=23.34;ReadPosRankSum=1.643;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,194:197:99:4597,510,0 chrV 329070 . G A 3084 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.77;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3117,348,0 chrV 329286 . A G 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=2.981;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.319;QD=20.18;ReadPosRankSum=2.406;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2313,258,0 chrV 329430 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.21;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2319,252,0 chrV 329730 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.92;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1611,180,0 chrV 330290 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.52;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1915,204,0 chrV 330553 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.36;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2579,288,0 chrV 331286 . A G 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=95;Dels=0.00;FS=5.430;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.309;QD=18.20;ReadPosRankSum=2.926;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1762,204,0 chrV 332219 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.776;QD=24.14;ReadPosRankSum=1.692;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2133,240,0 chrV 332410 . G A 2803 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.5846;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.60;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2836,303,0 chrV 332460 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.62;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1355,147,0 chrV 332482 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.84;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1481,162,0 chrV 333114 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.30;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1393,159,0 chrV 333160 . A T 732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;DP=38;Dels=0.00;FS=12.672;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-1.733;QD=19.26;ReadPosRankSum=1.639;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:84:765,84,0 chrV 333164 . T C 729 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:87:762,87,0 chrV 333251 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.47;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1089,120,0 chrV 333308 . C T 855 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.00;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:888,99,0 chrV 333317 . C G 886 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.14;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:919,105,0 chrV 333669 . C G 1603 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.1608;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.01;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1636,186,0 chrV 333687 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.77;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1419,156,0 chrV 333688 . A G 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.623;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.319;QD=17.18;ReadPosRankSum=1.641;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1373,156,0 chrV 334003 . G C 1861 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.98;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1894,213,0 chrV 334031 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.174;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.920;QD=21.95;ReadPosRankSum=1.689;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1833,204,0 chrV 334084 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.38;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2321,258,0 chrV 334216 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.98;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2245,249,0 chrV 334274 . T G 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=122;Dels=0.00;FS=8.296;HaplotypeScore=6.0020;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.539;QD=18.75;ReadPosRankSum=3.285;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2321,261,0 chrV 334331 . T C 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.182;QD=21.26;ReadPosRankSum=1.667;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2308,261,0 chrV 334676 . T C 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.175;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.102;QD=16.98;ReadPosRankSum=1.698;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1765,207,0 chrV 334750 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.32;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2776,315,0 chrV 335310 . C G 2827 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5203;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.49;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2860,318,0 chrV 335352 . A G 2372 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.6792;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.45;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2405,270,0 chrV 335812 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.1076;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.732;QD=18.29;ReadPosRankSum=1.413;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1441,162,0 chrV 335874 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=14.90;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1642,180,0 chrV 336237 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.05;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1938,213,0 chrV 336549 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.09;SB=-1.663e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2686,297,0 chrV 336702 . A G 3056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.652;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.705;QD=22.98;ReadPosRankSum=-0.400;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:3089,325,0 chrV 337281 . G C 905 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=18.47;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:938,105,0 chrV 337672 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1117,126,0 chrV 337768 . A G 2389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=5.670;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.603;QD=22.33;ReadPosRankSum=1.700;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2422,279,0 chrV 337863 . A C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.455;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-1.372;QD=17.48;ReadPosRankSum=-0.734;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2218,227,0 chrV 337864 . T C 2261 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.09;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2294,255,0 chrV 338269 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.47;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1805,207,0 chrV 338308 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.10;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1974,222,0 chrV 338516 . C A 2589 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.0218;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.76;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2622,288,0 chrV 338773 . A T 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.785;QD=22.14;ReadPosRankSum=1.673;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2646,291,0 chrV 339244 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.165;QD=19.34;ReadPosRankSum=1.608;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1677,189,0 chrV 339301 . A G 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.7667;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.250;QD=18.11;ReadPosRankSum=1.688;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1464,165,0 chrV 339355 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1360,156,0 chrV 339555 . C T 966 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.55;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:999,105,0 chrV 339578 . C A 893 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.26;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:926,102,0 chrV 339635 . T G 867 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=19.27;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:900,102,0 chrV 339960 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.60;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1331,150,0 chrV 340292 . T C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.032;QD=18.82;ReadPosRankSum=1.654;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:1,88:91:99:1746,198,0 chrV 340374 . G C 2405 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.91;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2438,279,0 chrV 340779 . G A 2340 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.35;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2373,273,0 chrV 341688 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.479;QD=19.26;ReadPosRankSum=1.648;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1612,183,0 chrV 342057 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.76;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1839,201,0 chrV 342688 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=21.9033;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;MQRankSum=0.905;QD=13.89;ReadPosRankSum=1.693;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1297,144,0 chrV 342731 . C A 1725 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=17.60;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1758,195,0 chrV 342869 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.59;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2439,276,0 chrV 343116 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.34;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1291,138,0 chrV 343118 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.05;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1380,153,0 chrV 343350 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.68;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2080,222,0 chrV 344031 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1746,198,0 chrV 344574 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1321,144,0 chrV 344643 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1554,165,0 chrV 345204 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.60;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:878,99,0 chrV 345278 . A G 857 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.93;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:890,99,0 chrV 346257 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.05;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1657,186,0 chrV 346467 . G A 1760 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.46;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1793,201,0 chrV 346546 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.13;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1660,186,0 chrV 346563 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.33;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1591,177,0 chrV 346596 . T C 1497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=81;Dels=0.00;FS=5.672;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=1.899;QD=18.48;ReadPosRankSum=2.811;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1530,174,0 chrV 346614 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.13;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1701,186,0 chrV 346707 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.34;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1775,195,0 chrV 346966 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.67;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1265,135,0 chrV 346971 . T A 1113 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1871;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=16.13;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1146,123,0 chrV 347145 . C G 2133 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.55;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2166,243,0 chrV 347202 . T A 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=3.622;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.137;QD=21.94;ReadPosRankSum=1.697;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2227,243,0 chrV 347367 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.47;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2287,258,0 chrV 347523 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.79;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1649,183,0 chrV 347565 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.93;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1167,126,0 chrV 347954 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.24;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1119,126,0 chrV 347966 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.04;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1023,114,0 chrV 348013 . T C 875 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=16.83;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:908,102,0 chrV 348231 . T A 2160 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.95;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2193,237,0 chrV 348234 . C T 2178 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.45;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2211,237,0 chrV 348237 . A T 2089 SnpCluster AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.01;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2122,231,0 chrV 348378 . A C 1164 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8566;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.08;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1197,138,0 chrV 348419 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.32;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1020,114,0 chrV 348538 . T A 1211 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.30;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1244,141,0 chrV 348697 . G T 1445 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.94;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1478,165,0 chrV 348780 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.69;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1957,219,0 chrV 349266 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.90;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1769,198,0 chrV 349414 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.8573;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=16.84;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2054,225,0 chrV 349434 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.11;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2173,231,0 chrV 349693 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.16;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2205,237,0 chrV 349975 . G T 3288.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=13.5686;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.68;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3288,357,0 chrV 350100 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.28;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1479,171,0 chrV 350270 . A G 2411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.5246;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.081;QD=20.61;ReadPosRankSum=1.673;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2444,279,0 chrV 350516 . T C 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.374;QD=21.46;ReadPosRankSum=1.673;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1299,147,0 chrV 350543 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.39;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1119,120,0 chrV 350630 . T C 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.000;QD=20.35;ReadPosRankSum=1.632;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2149,243,0 chrV 350741 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.3742;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.87;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2537,276,0 chrV 351098 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.414;QD=21.79;ReadPosRankSum=1.379;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2168,249,0 chrV 351383 . G T 1149 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.41;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1182,129,0 chrV 351384 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.577;QD=17.47;ReadPosRankSum=-0.262;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1186,135,0 chrV 351910 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=20.25;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2422,264,0 chrV 351979 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.67;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2005,225,0 chrV 352270 . T C 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.171;QD=16.51;ReadPosRankSum=1.635;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,70:73:99:1238,141,0 chrV 352279 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5829;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.16;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1277,141,0 chrV 352394 . A G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.043;QD=17.89;ReadPosRankSum=1.646;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1482,168,0 chrV 352574 . T A 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.188;QD=22.62;ReadPosRankSum=1.649;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1933,213,0 chrV 352751 . A T 2016 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.85;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2049,219,0 chrV 353095 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.52;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2244,246,0 chrV 353158 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.21;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1685,192,0 chrV 353407 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.48;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1989,216,0 chrV 353446 . T G 1594 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.92;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1627,183,0 chrV 353499 . G T 1372 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.79;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1405,150,0 chrV 353501 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.21;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1301,144,0 chrV 353535 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.08;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1361,150,0 chrV 353583 . C A 1508 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.11;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1541,174,0 chrV 353643 . T G 1786 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.41;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1819,207,0 chrV 353654 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0410;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.35;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2088,225,0 chrV 353683 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=14.40;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1214,138,0 chrV 353687 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.10;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1256,138,0 chrV 353854 . C A 1491 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.00;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1524,174,0 chrV 353927 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3406;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.78;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1571,177,0 chrV 353975 . T C 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=3.302;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;MQRankSum=0.112;QD=18.37;ReadPosRankSum=1.687;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1484,171,0 chrV 353984 . G C 1513 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=18.01;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1546,177,0 chrV 354000 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=17.81;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1262,141,0 chrV 354297 . A T 1190 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=22.04;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1223,135,0 chrV 354325 . A G 1057 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=20.73;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1090,123,0 chrV 354400 . A G 105.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=3;QD=11.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,7:9:15:138,15,0 chrV 354402 . A G 90.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=3;QD=10.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,7:9:15:123,15,0 chrV 354404 . T G 101.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=3;QD=11.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:15:134,15,0 chrV 354652 . G T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.55;MQ0=21;QD=1.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:19,3:23:6:57,6,0 chrV 354752 . A C 201.01 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=5.03;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:234,27,0 chrV 354813 . G C 1014 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.13;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1047,117,0 chrV 354838 . C A 1085 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=17.22;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1118,129,0 chrV 354845 . A C 1112 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=17.65;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1145,129,0 chrV 354899 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.47;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1649,186,0 chrV 355019 . T C 238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.182;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=39.2714;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-1.641;QD=5.80;ReadPosRankSum=0.547;SB=-8.102e+01 GT:AD:DP:GQ:PL 1/1:1,37:40:30:271,30,0 chrV 355038 . G T 316 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=29.6250;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=7.71;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:39:349,39,0 chrV 355825 . T G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=87;Dels=0.00;FS=3.058;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.529;QD=16.33;ReadPosRankSum=2.391;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,81:87:99:1454,162,0 chrV 355867 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.37;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1668,195,0 chrV 356114 . C A 1946 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1979,219,0 chrV 356207 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.24;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1450,156,0 chrV 356208 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=20.62;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1456,156,0 chrV 356220 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.687;QD=17.83;ReadPosRankSum=1.687;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1424,159,0 chrV 356363 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:797,84,0 chrV 356484 . T C 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=4.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.078;QD=21.03;ReadPosRankSum=1.681;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1442,159,0 chrV 356575 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.85;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,183,0 chrV 356837 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.12;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1559,174,0 chrV 357733 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.42;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1468,159,0 chrV 357876 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.12;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1700,186,0 chrV 358073 . T A 2678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.904;QD=23.49;ReadPosRankSum=1.671;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2711,294,0 chrV 358357 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1899,207,0 chrV 358579 . G C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.7992;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.664;QD=15.77;ReadPosRankSum=-0.408;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,101:107:99:1720,195,0 chrV 359292 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.08;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1384,156,0 chrV 360015 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.737;QD=19.75;ReadPosRankSum=1.698;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2047,231,0 chrV 360069 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2238,252,0 chrV 360105 . A G 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.676;QD=22.55;ReadPosRankSum=1.565;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1431,159,0 chrV 360247 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.627;QD=19.51;ReadPosRankSum=2.375;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1340,150,0 chrV 360318 . C A 1875 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.16;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1908,210,0 chrV 360556 . A G 995 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.4970;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.31;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,114,0 chrV 361213 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.56;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2110,231,0 chrV 361243 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.45;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1976,222,0 chrV 361905 . G T 2383 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.86;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2416,261,0 chrV 361960 . A G 1878 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.36;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1911,213,0 chrV 362194 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=17.48;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1466,159,0 chrV 362202 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=16.69;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1268,144,0 chrV 362205 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=14.55;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1168,135,0 chrV 362224 . A C 1215 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=15.19;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1248,141,0 chrV 362260 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1744;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=16.85;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1533,165,0 chrV 362296 . T C 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=6.251;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=1.142;QD=19.46;ReadPosRankSum=2.398;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1901,210,0 chrV 362343 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=16.06;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1045,111,0 chrV 362344 . A T 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-1.617;QD=15.68;ReadPosRankSum=1.675;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1021,111,0 chrV 362383 . A T 807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=75;Dels=0.00;FS=17.901;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=-2.220;QD=10.76;ReadPosRankSum=2.384;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:96:840,96,0 chrV 362389 . A G 1000 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=12.35;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1033,117,0 chrV 362397 . G T 1047 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.31;MQ0=0;QD=12.61;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1080,117,0 chrV 362406 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=11.37;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1045,123,0 chrV 362418 . A G 1036 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=11.14;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1069,120,0 chrV 362609 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=24.7736;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=20.82;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1803,201,0 chrV 362681 . T G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;MQRankSum=-0.782;QD=13.58;ReadPosRankSum=1.701;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1568,174,0 chrV 362682 . G C 1556 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=13.08;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:1589,177,0 chrV 362788 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=20.01;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1654,186,0 chrV 362832 . C T 1001 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=15.89;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1034,117,0 chrV 362834 . A T 969 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=15.38;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1002,114,0 chrV 362837 . G A 1032 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.38;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1065,117,0 chrV 362931 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.66;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1914,207,0 chrV 362962 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=4.708;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.662;QD=22.30;ReadPosRankSum=1.681;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1572,177,0 chrV 363002 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=22.55;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1702,186,0 chrV 363023 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=21.53;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2078,231,0 chrV 363243 . T C 1248 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=2;QD=20.46;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1281,144,0 chrV 363833 . T C 2175 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=20.71;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2208,255,0 chrV 364031 . A G 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=-0.118;QD=18.85;ReadPosRankSum=1.693;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1692,189,0 chrV 364059 . T A 1244 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=15.75;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1277,138,0 chrV 364071 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=15.42;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1251,135,0 chrV 364081 . T A 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=9.661;HaplotypeScore=5.6727;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-1.727;QD=14.82;ReadPosRankSum=2.121;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1159,123,0 chrV 364082 . C T 924 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=12.00;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:957,108,0 chrV 364150 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.56;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1564,171,0 chrV 364196 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1854,201,0 chrV 364465 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.36;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1116,123,0 chrV 365839 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=71;Dels=0.00;FS=2.630;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.116;QD=21.72;ReadPosRankSum=2.900;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:3,67:71:99:1575,180,0 chrV 366285 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:960,105,0 chrV 366524 . A T 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.071;QD=19.79;ReadPosRankSum=2.269;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1379,147,0 chrV 366566 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=19.85;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1105,120,0 chrV 366698 . G T 1013 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.08;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1046,114,0 chrV 366971 . C A 2143 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.80;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2176,240,0 chrV 367786 . G A 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.149;DP=97;Dels=0.00;FS=4.592;HaplotypeScore=6.8593;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.696;QD=19.20;ReadPosRankSum=1.623;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1895,207,0 chrV 368184 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.13;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1606,174,0 chrV 368706 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.05;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1214,138,0 chrV 368771 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=21.65;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1397,153,0 chrV 368857 . T G 1508 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.11;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1541,174,0 chrV 369120 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.30;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1186,129,0 chrV 369437 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.96;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1584,177,0 chrV 369472 . T G 1523 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.08;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1556,174,0 chrV 369827 . A G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.853;QD=21.13;ReadPosRankSum=1.681;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1449,168,0 chrV 370253 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.25;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1653,186,0 chrV 370268 . A T 1756 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=21.16;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1789,201,0 chrV 370286 . A G 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;MQRankSum=-0.417;QD=17.86;ReadPosRankSum=1.644;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1462,145,0 chrV 370290 . C A 1575 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=19.44;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1608,174,0 chrV 370316 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=19.03;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1765,195,0 chrV 370346 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=21.14;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1999,222,0 chrV 370367 . C T 2308 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=21.57;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2341,255,0 chrV 370417 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=17.65;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1798,204,0 chrV 370435 . T G 1758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-0.261;QD=16.58;ReadPosRankSum=1.699;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1791,201,0 chrV 370455 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=5.625;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-0.433;QD=13.85;ReadPosRankSum=2.928;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1390,156,0 chrV 370463 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=15.16;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1519,168,0 chrV 370471 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=13.64;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1383,150,0 chrV 370573 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=22.40;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1534,165,0 chrV 370590 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=18.90;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1205,135,0 chrV 370598 . A G 924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=-0.385;QD=17.11;ReadPosRankSum=1.668;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:957,108,0 chrV 370611 . A G 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=0.000;QD=15.84;ReadPosRankSum=1.670;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:920,102,0 chrV 370718 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=19.36;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2085,231,0 chrV 370727 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.19;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2153,237,0 chrV 370746 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=18.87;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1845,198,0 chrV 370850 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.31;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1823,204,0 chrV 370893 . A T 1447 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=18.55;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1480,162,0 chrV 370904 . A G 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.699;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=0.393;QD=15.68;ReadPosRankSum=1.686;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1225,141,0 chrV 370913 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=15.16;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1246,141,0 chrV 370940 . T C 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=70;Dels=0.00;FS=2.748;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=-1.091;QD=13.24;ReadPosRankSum=2.379;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:960,111,0 chrV 371210 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.16;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1719,189,0 chrV 371216 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9265;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.34;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1611,177,0 chrV 371288 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.51;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1223,141,0 chrV 371302 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.44;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1355,153,0 chrV 371398 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5872;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.21;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1266,138,0 chrV 371820 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=15.56;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1091,120,0 chrV 371829 . T A 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.931;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;MQRankSum=0.562;QD=14.86;ReadPosRankSum=1.685;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1133,126,0 chrV 371849 . C T 1000 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=12.35;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1033,111,0 chrV 371856 . T G 1041 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=12.10;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1074,123,0 chrV 371859 . C T 1045 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=12.29;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1078,117,0 chrV 371986 . T C 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=8.513;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.903;QD=11.82;ReadPosRankSum=1.586;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:96:872,96,0 chrV 372248 . T A 1040 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=24.19;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1073,114,0 chrV 372263 . A G 823 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.10;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:856,99,0 chrV 372487 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.088;QD=23.47;ReadPosRankSum=1.674;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1418,159,0 chrV 372822 . A T 1291 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.49;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1324,147,0 chrV 372836 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.30;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1375,150,0 chrV 373147 . G A 688 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.24;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:721,78,0 chrV 373148 . G A 661 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.44;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:694,75,0 chrV 373154 . A C 635 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.24;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:668,75,0 chrV 373232 . T C 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=40;Dels=0.00;FS=4.559;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.646;QD=18.55;ReadPosRankSum=1.559;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:87:775,87,0 chrV 373400 . T A 2527 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.77;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2560,276,0 chrV 373416 . G C 2422 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.64;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2455,270,0 chrV 373736 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=3.032;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.341;QD=18.76;ReadPosRankSum=2.367;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2265,255,0 chrV 374835 . A G 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=0.487;QD=15.49;ReadPosRankSum=1.678;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1040,117,0 chrV 374887 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=16.60;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1444,162,0 chrV 374891 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.04;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1512,159,0 chrV 374909 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.47;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1326,153,0 chrV 374915 . T G 1500 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.48;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1533,171,0 chrV 375017 . C A 1764 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.6365;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.28;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1797,198,0 chrV 375051 . G A 1150 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.17;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1183,129,0 chrV 375068 . G A 838 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.22;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:871,99,0 chrV 375429 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.93;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:996,108,0 chrV 375717 . T C 1110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=13.2703;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.833;QD=17.08;ReadPosRankSum=2.334;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:99:1143,129,0 chrV 375822 . C G 843 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.56;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:876,102,0 chrV 376001 . G T 1871 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.90;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1904,219,0 chrV 376050 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.6634;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.53;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2004,225,0 chrV 376103 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.66;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2050,237,0 chrV 376178 . C G 1020 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.21;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1053,123,0 chrV 376275 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.27;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1748,189,0 chrV 376454 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=14.06;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1003,117,0 chrV 376468 . A C 856 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0659;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=13.37;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:889,102,0 chrV 376496 . A G 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.051;QD=13.48;ReadPosRankSum=1.619;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:869,99,0 chrV 376886 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.64;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1591,180,0 chrV 377102 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.48;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2181,243,0 chrV 377190 . T C 2342 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.90;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2375,270,0 chrV 377281 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1111;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.03;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2405,267,0 chrV 377456 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=13.96;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1345,150,0 chrV 377465 . T C 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=4.680;HaplotypeScore=88.3836;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.069;QD=9.78;ReadPosRankSum=1.695;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:972,114,0 chrV 377999 . A G 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.682;QD=14.12;ReadPosRankSum=1.627;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:965,108,0 chrV 378036 . A C 934 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=12.62;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:967,111,0 chrV 378046 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=13.67;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1072,120,0 chrV 378269 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.45;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2097,225,0 chrV 378297 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.88;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1662,186,0 chrV 378311 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=17.97;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1381,150,0 chrV 378395 . A C 1194 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.59;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1227,141,0 chrV 378586 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.48;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1692,186,0 chrV 379332 . C A 2617 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.10;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2650,288,0 chrV 379893 . G A 2036 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.21;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2069,222,0 chrV 379980 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.05;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1919,210,0 chrV 380166 . A G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.600;QD=18.58;ReadPosRankSum=1.699;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1984,225,0 chrV 380502 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2147,234,0 chrV 380871 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.40;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2515,276,0 chrV 381575 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.22;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1603,180,0 chrV 381719 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.77;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1570,174,0 chrV 381728 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.97;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1513,165,0 chrV 381852 . T G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.489;QD=19.71;ReadPosRankSum=1.688;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1570,180,0 chrV 382087 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.65;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1092,123,0 chrV 382350 . T C 76.51 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=2.94;SB=-1.635e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:12:109,12,0 chrV 382366 . A G 179.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=8.14;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:212,24,0 chrV 382369 . C G 177.03 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=7.70;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:210,24,0 chrV 382384 . A G 181.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=9.05;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:214,24,0 chrV 382388 . A G 211.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=0;QD=9.59;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:27:244,27,0 chrV 382470 . C T 433 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.65;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:466,51,0 chrV 382516 . T C 127.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=11.7986;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=8.48;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:160,18,0 chrV 382763 . A T 903 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.57;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:936,102,0 chrV 383480 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1461,159,0 chrV 383543 . T G 1318 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.72;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1351,156,0 chrV 383774 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.95;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1311,150,0 chrV 383903 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.21;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1474,165,0 chrV 383986 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.693;QD=19.76;ReadPosRankSum=1.683;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1416,159,0 chrV 384035 . A G 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.192;QD=19.84;ReadPosRankSum=1.689;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1640,186,0 chrV 384158 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.33;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1993,213,0 chrV 384497 . G A 2288 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.23;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2321,261,0 chrV 385085 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=7.0409;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.10;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1480,165,0 chrV 385325 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.00;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1273,141,0 chrV 385358 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1400,159,0 chrV 385956 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.21;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1727,189,0 chrV 386230 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.52;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1408,159,0 chrV 386408 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=20.92;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1330,150,0 chrV 386462 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5434;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=14.03;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:889,102,0 chrV 386486 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=0.313;QD=18.10;ReadPosRankSum=1.690;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1535,171,0 chrV 386503 . G A 1515 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=17.82;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1548,168,0 chrV 386508 . C T 1373 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=14.92;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1406,156,0 chrV 386509 . T C 1327 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=14.42;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1360,153,0 chrV 386623 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.47;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1961,210,0 chrV 386692 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.04;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1155,129,0 chrV 386824 . A G 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0946;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.801;QD=19.92;ReadPosRankSum=1.655;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2722,309,0 chrV 386884 . A T 3142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.772;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.477;QD=22.44;ReadPosRankSum=1.707;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,138:140:99:3175,345,0 chrV 386965 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.95;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1777,198,0 chrV 387052 . T G 1595 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1628,183,0 chrV 387086 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2134,231,0 chrV 387188 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.04;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1804,207,0 chrV 387218 . A T 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.732;QD=18.86;ReadPosRankSum=1.694;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1787,201,0 chrV 387695 . T A 500 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.89;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:57:533,57,0 chrV 387774 . T C 924 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:957,108,0 chrV 388012 . T C 650 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:78:683,78,0 chrV 388541 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.06;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2244,246,0 chrV 388556 . C G 2002 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.04;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2035,228,0 chrV 388646 . A T 2664 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.37;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2697,303,0 chrV 388982 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.98;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2656,291,0 chrV 389531 . A G 2294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=119;Dels=0.00;FS=7.409;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.189;QD=19.28;ReadPosRankSum=2.346;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2327,261,0 chrV 389561 . G C 2216 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.27;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2249,255,0 chrV 389576 . C T 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.1447;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.449;QD=14.51;ReadPosRankSum=1.123;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1615,192,0 chrV 389822 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.49;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2369,267,0 chrV 389903 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7343;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.85;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1684,183,0 chrV 389989 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.70;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1378,150,0 chrV 390061 . G T 812 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=14.76;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:845,93,0 chrV 390093 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.19;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1146,123,0 chrV 390437 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.24;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:736,78,0 chrV 390851 . C A 1955 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.73;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1988,216,0 chrV 391292 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.84;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2217,243,0 chrV 391589 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.99;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1512,165,0 chrV 391914 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.005;QD=19.47;ReadPosRankSum=1.663;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2019,228,0 chrV 392090 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.15;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1723,192,0 chrV 392252 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.301;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.742;QD=17.96;ReadPosRankSum=1.666;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1919,216,0 chrV 392305 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2702;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.94;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,91:96:99:1851,207,0 chrV 392813 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.14;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1317,150,0 chrV 393117 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.17;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1585,177,0 chrV 393341 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.8365;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.247;QD=16.66;ReadPosRankSum=1.683;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,69:77:99:1316,147,0 chrV 393855 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.27;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1121,126,0 chrV 393858 . G C 1073 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.51;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1106,123,0 chrV 393902 . A G 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.155;QD=18.10;ReadPosRankSum=1.675;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1119,126,0 chrV 394021 . C T 524 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.88;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:557,63,0 chrV 394083 . T A 314 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=9.52;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:39:347,39,0 chrV 394349 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.76;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1194,132,0 chrV 394357 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.46;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1192,138,0 chrV 394442 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.65;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1224,132,0 chrV 394642 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.80;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1518,168,0 chrV 394655 . A G 1627 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4956;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.34;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1660,186,0 chrV 394875 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.12;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1117,123,0 chrV 395011 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.47;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1343,147,0 chrV 395075 . A G 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=75;Dels=0.00;FS=2.624;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.852;QD=14.76;ReadPosRankSum=2.771;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1140,108,0 chrV 395078 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.97;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1238,135,0 chrV 395227 . C G 730 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=15.53;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:763,84,0 chrV 395447 . C T 2878 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.03;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2911,318,0 chrV 395786 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7401;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=15.22;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2012,225,0 chrV 395813 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=17.18;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1991,216,0 chrV 396138 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=16.21;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1054,114,0 chrV 396344 . G T 2107 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2140,237,0 chrV 396377 . A G 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.528;QD=22.28;ReadPosRankSum=1.681;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1548,177,0 chrV 396464 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.69;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:860,93,0 chrV 396489 . T C 784 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=11.7909;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.42;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:817,93,0 chrV 396523 . A G 602 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=14.33;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:635,72,0 chrV 396536 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=13.97;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:578,63,0 chrV 397105 . T G 1586 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.82;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1619,183,0 chrV 397401 . A G 1035 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.16;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1068,120,0 chrV 397753 . T G 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.689;QD=21.57;ReadPosRankSum=1.689;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1780,201,0 chrV 397892 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2673,294,0 chrV 398657 . G C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.816;DP=125;Dels=0.00;FS=3.269;HaplotypeScore=7.4064;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.873;QD=18.29;ReadPosRankSum=1.646;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,120:125:99:2319,246,0 chrV 398687 . A T 2081 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.09;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2114,231,0 chrV 398975 . T G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=3.561;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.485;QD=19.67;ReadPosRankSum=1.691;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1705,192,0 chrV 399480 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.61;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1301,138,0 chrV 399565 . A G 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=7.539;HaplotypeScore=9.0079;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.393;QD=20.42;ReadPosRankSum=2.375;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1401,156,0 chrV 399605 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.02;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1288,144,0 chrV 399993 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.46;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2135,231,0 chrV 400005 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.683;QD=17.68;ReadPosRankSum=1.669;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1978,222,0 chrV 400033 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=17.60;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1899,207,0 chrV 400481 . T C 2621 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.64;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2654,294,0 chrV 400856 . C T 2424 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.96;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2457,267,0 chrV 400890 . G A 2461 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.9684;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.79;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2494,276,0 chrV 401545 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.000;QD=21.95;ReadPosRankSum=1.688;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1745,195,0 chrV 402148 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.91;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1646,192,0 chrV 402168 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.34;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1830,201,0 chrV 402268 . T A 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.115;HaplotypeScore=6.5771;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.536;QD=20.45;ReadPosRankSum=1.650;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1812,198,0 chrV 402321 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.09;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2154,243,0 chrV 402355 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.87;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2286,252,0 chrV 402543 . A G 2394 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.00;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2427,279,0 chrV 402722 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.46;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1690,186,0 chrV 403012 . C A 1789 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.05;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1822,207,0 chrV 403054 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.09;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2223,255,0 chrV 403078 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.52;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2270,246,0 chrV 403557 . T C 2035 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.42;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2068,234,0 chrV 403765 . G T 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.97;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1551,174,0 chrV 403778 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.81;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1638,183,0 chrV 403825 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.54;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1164,129,0 chrV 404317 . T C 891 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:924,102,0 chrV 404530 . A T 841 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=11.68;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:874,102,0 chrV 404541 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0745;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=10.99;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:923,105,0 chrV 404924 . T G 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.208;QD=22.03;ReadPosRankSum=1.652;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1950,219,0 chrV 406584 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.98;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1077,123,0 chrV 406782 . C A 779 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.91;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:812,87,0 chrV 407153 . T A 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.1928;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.258;QD=24.50;ReadPosRankSum=1.659;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1209,132,0 chrV 407199 . T C 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.732;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.146;QD=16.06;ReadPosRankSum=2.606;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:3,46:49:93:820,93,0 chrV 407205 . T C 812 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=17.28;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:96:845,96,0 chrV 407957 . G T 1960 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.78;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1993,219,0 chrV 407977 . T A 1813 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.38;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1846,198,0 chrV 408209 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.33;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2296,249,0 chrV 408389 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.2997;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.16;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1695,186,0 chrV 408701 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=15.02;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1009,111,0 chrV 408710 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=15.69;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:990,108,0 chrV 408715 . C A 949 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.65;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:982,105,0 chrV 408813 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.59;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1032,111,0 chrV 408950 . T C 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.047;QD=20.15;ReadPosRankSum=1.639;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1524,174,0 chrV 409168 . T G 1370 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.77;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1403,156,0 chrV 409183 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.87;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1184,129,0 chrV 409209 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=7.171;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=1.154;QD=17.23;ReadPosRankSum=2.369;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1101,123,0 chrV 409394 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.260;QD=18.68;ReadPosRankSum=1.680;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1266,141,0 chrV 409516 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=14.37;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:924,102,0 chrV 409528 . T C 580 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=10.74;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:69:613,69,0 chrV 410473 . G A 2334 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=19.78;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2367,264,0 chrV 410947 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.61;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2341,252,0 chrV 412892 . A G 585 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:69:618,69,0 chrV 412969 . T G 71.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.751;QD=7.15;ReadPosRankSum=0.751;SB=-2.472e+01 GT:AD:DP:GQ:PL 1/1:1,8:10:12:104,12,0 chrV 413111 . T C 282 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:36:315,36,0 chrV 413129 . G A 377 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.94;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:45:410,45,0 chrV 413160 . G A 341 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:374,42,0 chrV 413233 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:591,63,0 chrV 413281 . T A 477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.734;QD=19.87;ReadPosRankSum=1.583;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:57:510,57,0 chrV 414190 . T A 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=5.248;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.462;QD=17.01;ReadPosRankSum=1.417;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1343,150,0 chrV 414642 . T C 1623 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.23;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1656,186,0 chrV 414720 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.01;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1924,213,0 chrV 414780 . T C 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.056;QD=21.97;ReadPosRankSum=1.695;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2076,234,0 chrV 415086 . C A 2485 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.80;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2518,273,0 chrV 415310 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.73;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2539,294,0 chrV 415411 . C A 1817 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.89;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1850,201,0 chrV 415657 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2090;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1942,210,0 chrV 415894 . A C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=6.410;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.396;QD=20.14;ReadPosRankSum=1.683;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1443,162,0 chrV 416178 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.602;QD=21.50;ReadPosRankSum=1.689;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1753,195,0 chrV 416321 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.1729;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.63;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1569,168,0 chrV 416792 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.31;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1404,153,0 chrV 417320 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=85;Dels=0.00;FS=13.366;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.217;QD=20.81;ReadPosRankSum=2.330;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:2,80:85:99:1802,210,0 chrV 417388 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.53;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1586,174,0 chrV 417511 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.62;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1438,156,0 chrV 417910 . T C 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=2.990;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.020;QD=19.58;ReadPosRankSum=2.333;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1286,147,0 chrV 418504 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.04;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1061,120,0 chrV 418792 . G A 925 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:958,105,0 chrV 418874 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.45;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1604,174,0 chrV 418981 . T C 3049 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=13.6443;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.03;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3082,348,0 chrV 419354 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.171;QD=16.26;ReadPosRankSum=1.699;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1740,195,0 chrV 419536 . T G 1288 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.89;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1321,150,0 chrV 419568 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.40;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1039,114,0 chrV 419631 . T G 621 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=11.94;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:654,75,0 chrV 419654 . T G 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=55;Dels=0.00;FS=6.197;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.604;QD=15.76;ReadPosRankSum=2.870;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:3,51:55:99:900,99,0 chrV 419827 . T A 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.84;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1325,144,0 chrV 420040 . T C 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=105;Dels=0.00;FS=2.570;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.240;QD=20.75;ReadPosRankSum=2.876;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2212,246,0 chrV 420266 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.13;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2147,243,0 chrV 420279 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.98;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1874,213,0 chrV 420292 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=16.79;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1695,195,0 chrV 420376 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.89;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2289,258,0 chrV 420432 . A G 2949 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.2626;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.34;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2982,333,0 chrV 420478 . C A 3406.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.65;SB=-1.773e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3406,372,0 chrV 420596 . C A 1907 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.07;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1940,210,0 chrV 420619 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.03;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1403,159,0 chrV 421040 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.31;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1324,147,0 chrV 421193 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1087,129,0 chrV 421838 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.99;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1652,180,0 chrV 421919 . A G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.260;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.417;QD=21.95;ReadPosRankSum=1.693;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1965,222,0 chrV 422000 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.20;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1588,171,0 chrV 422021 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.39;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1511,168,0 chrV 422226 . A C 1412 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.61;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1445,162,0 chrV 422511 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.60;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2063,222,0 chrV 422613 . G C 1890 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.72;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1923,216,0 chrV 423233 . G C 1738 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.87;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1771,198,0 chrV 423522 . T C 3157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=134;Dels=0.00;FS=2.890;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.712;QD=23.56;ReadPosRankSum=2.413;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:2,131:134:99:3190,357,0 chrV 423805 . T A 2234 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9367;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.77;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2267,246,0 chrV 423827 . A G 2555 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=4.9870;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.41;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2588,294,0 chrV 424461 . G A 561 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:594,66,0 chrV 424638 . C T 825 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=7.4363;MLEAC=2;MLEAF=1.00;MQ=61.16;MQ0=0;QD=22.30;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:858,93,0 chrV 424935 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:913,99,0 chrV 425002 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:669,72,0 chrV 425334 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1619,183,0 chrV 425386 . A C 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.910;QD=19.59;ReadPosRankSum=1.563;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,62:66:99:1326,150,0 chrV 425833 . G C 925 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.68;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:958,108,0 chrV 425902 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.25;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1016,117,0 chrV 425923 . T C 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.172;QD=17.49;ReadPosRankSum=1.630;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1222,138,0 chrV 426331 . C A 1390 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.35;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1423,153,0 chrV 426332 . A T 1379 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=16.61;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1412,156,0 chrV 426357 . G T 1438 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.12;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1471,159,0 chrV 426433 . A G 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.577;QD=20.28;ReadPosRankSum=1.588;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1980,225,0 chrV 426583 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.8518;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.08;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1617,183,0 chrV 426961 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.67;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1620,183,0 chrV 427341 . A C 1314 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0831;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.04;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1347,156,0 chrV 427684 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=83;Dels=0.00;FS=5.519;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.354;QD=19.71;ReadPosRankSum=2.891;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1669,186,0 chrV 427920 . A G 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=107;Dels=0.00;FS=8.398;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.265;QD=20.63;ReadPosRankSum=2.312;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2240,255,0 chrV 428230 . T C 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=80;Dels=0.00;FS=6.189;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.089;QD=20.32;ReadPosRankSum=2.912;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1659,192,0 chrV 428251 . T G 1738 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.69;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1771,201,0 chrV 428311 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.97;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1866,204,0 chrV 428478 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.25;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1797,201,0 chrV 428860 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=7.478;HaplotypeScore=8.1892;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.148;QD=18.81;ReadPosRankSum=1.003;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1444,162,0 chrV 428948 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2056,234,0 chrV 429460 . A C 1368 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=15.20;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1401,159,0 chrV 429466 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=15.78;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1485,159,0 chrV 429593 . T A 1149 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.7252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1182,129,0 chrV 429823 . A T 2430 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.29;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2463,273,0 chrV 430033 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.83;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1595,177,0 chrV 430228 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=95;Dels=0.00;FS=8.740;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.834;QD=17.97;ReadPosRankSum=3.362;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:4,90:95:99:1740,195,0 chrV 430454 . A T 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=53.8401;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.598;QD=15.62;ReadPosRankSum=2.257;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1048,117,0 chrV 430574 . A T 635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.326;QD=9.07;ReadPosRankSum=-1.130;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:75:668,75,0 chrV 430620 . T G 933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.686;QD=17.60;ReadPosRankSum=1.667;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:966,108,0 chrV 430652 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.58;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1259,138,0 chrV 430822 . A G 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=5.708;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.525;QD=20.06;ReadPosRankSum=1.681;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1397,156,0 chrV 430837 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.94;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1271,144,0 chrV 430899 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.53;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1182,129,0 chrV 430927 . T A 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.175;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.121;QD=17.96;ReadPosRankSum=1.681;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1254,135,0 chrV 431050 . C A 2045 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.9471;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.76;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2078,231,0 chrV 431114 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.30;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2330,252,0 chrV 431224 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=21.05;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1654,183,0 chrV 431557 . T C 298.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DP=95;Dels=0.00;FS=48.994;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=18.21;MQ0=2;MQRankSum=4.220;QD=3.14;ReadPosRankSum=-2.718;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:61,34:95:99:328,0,331 chrV 431836 . C T 102.26 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;QD=1.70;SB=-2.553e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:15:135,15,0 chrV 431930 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=20.89;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1683,186,0 chrV 432043 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=73;Dels=0.00;FS=2.886;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-2.011;QD=21.22;ReadPosRankSum=2.349;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1582,174,0 chrV 432695 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.86;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1519,162,0 chrV 433628 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.73;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1419,159,0 chrV 433844 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.06;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1116,129,0 chrV 434403 . A T 485 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=23.10;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:57:518,57,0 chrV 434405 . A G 485 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=23.10;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:57:518,57,0 chrV 434623 . T C 100.26 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=14.32;SB=-7.976e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:133,15,0 chrV 434658 . G A 208.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=1;QD=16.00;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:241,27,0 chrV 434860 . C A 331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=0;MQRankSum=-0.299;QD=11.41;ReadPosRankSum=1.614;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:42:364,42,0 chrV 434869 . A G 194.01 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=0;QD=7.46;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:227,27,0 chrV 434924 . T C 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=1;MQRankSum=-1.155;QD=16.13;ReadPosRankSum=2.338;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:3,42:45:84:759,84,0 chrV 434949 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=1;QD=19.92;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1089,120,0 chrV 434981 . T A 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.294;QD=21.31;ReadPosRankSum=1.667;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1184,129,0 chrV 435085 . T A 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.253;QD=21.76;ReadPosRankSum=1.654;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2013,228,0 chrV 435140 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=22.31;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1684,183,0 chrV 435174 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=19.13;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1181,141,0 chrV 435194 . G C 878 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=15.96;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:911,108,0 chrV 435213 . C G 675 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=12.74;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:87:708,87,0 chrV 435221 . G T 715 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.05;MQ0=0;QD=12.33;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:748,93,0 chrV 435243 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=13.05;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:999,114,0 chrV 435309 . T A 2496 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=18.91;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2529,285,0 chrV 435529 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=19.65;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1153,132,0 chrV 435566 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=12.49;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:620,69,0 chrV 435584 . T C 825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=64;Dels=0.00;FS=17.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;MQRankSum=0.508;QD=12.89;ReadPosRankSum=2.319;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:96:858,96,0 chrV 435591 . C T 805 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=13.42;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:838,93,0 chrV 435644 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=19.13;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1736,189,0 chrV 435662 . G C 1581 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=18.38;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1614,180,0 chrV 435665 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=19.89;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1624,174,0 chrV 435844 . A C 607 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=18.97;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:640,72,0 chrV 435856 . G T 524 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=17.47;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,28:30:60:557,60,0 chrV 435857 . G C 497 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=17.75;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:530,60,0 chrV 435863 . A T 489 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=19.56;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:57:522,57,0 chrV 435886 . G A 287 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=14.35;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:320,36,0 chrV 436536 . T G 1794 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.577;QD=24.92;ReadPosRankSum=1.684;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1827,204,0 chrV 436674 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=21.16;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1070,117,0 chrV 436763 . G C 2499 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.00;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2532,288,0 chrV 436820 . T C 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=18.8901;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.856;QD=18.59;ReadPosRankSum=0.458;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1650,186,0 chrV 437266 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.52;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1410,159,0 chrV 437318 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.44;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1043,114,0 chrV 437421 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.49;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2030,216,0 chrV 437783 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1540,177,0 chrV 437863 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.19;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1270,135,0 chrV 437901 . C T 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.400;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.178;QD=19.00;ReadPosRankSum=1.688;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1534,168,0 chrV 438038 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.06;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2316,258,0 chrV 438230 . T A 1421 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.56;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1454,162,0 chrV 438396 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0872;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.29;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1287,141,0 chrV 438461 . C T 752 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=16.35;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:84:785,84,0 chrV 438462 . A T 651 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=14.80;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:684,81,0 chrV 438514 . G C 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=16.55;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1059,120,0 chrV 438679 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.70;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1053,120,0 chrV 438684 . C A 1051 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.90;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1084,120,0 chrV 438836 . A C 1024 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=22.26;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1057,120,0 chrV 438881 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=19.31;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:960,108,0 chrV 438887 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=21.32;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1035,117,0 chrV 438929 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=19.06;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1329,150,0 chrV 439039 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.49;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1495,162,0 chrV 439161 . A C 1195 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.25;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1228,141,0 chrV 439255 . A G 2565 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.90;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2598,300,0 chrV 439285 . C T 2396 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.78;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2429,267,0 chrV 439581 . C T 2729 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=18.6178;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.21;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2762,300,0 chrV 439909 . T C 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=87;Dels=0.00;FS=4.619;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.608;QD=16.89;ReadPosRankSum=1.691;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,83:87:99:1502,168,0 chrV 440398 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1388,156,0 chrV 441237 . T C 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.953;QD=22.17;ReadPosRankSum=1.703;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2693,303,0 chrV 441329 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2661,297,0 chrV 441415 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.73;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2852,309,0 chrV 441621 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.09;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,94:98:99:2002,222,0 chrV 441843 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.40;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1701,198,0 chrV 441860 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.49;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1748,195,0 chrV 441894 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.29;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2119,231,0 chrV 442510 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=6.247;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.746;QD=17.03;ReadPosRankSum=2.349;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1702,195,0 chrV 442511 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.76;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1738,192,0 chrV 442550 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.724;DP=116;Dels=0.00;FS=2.414;HaplotypeScore=9.7761;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.509;QD=16.23;ReadPosRankSum=2.295;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,110:116:99:1916,213,0 chrV 442741 . A G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.091;QD=19.99;ReadPosRankSum=1.696;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1952,219,0 chrV 442840 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=116.6787;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.76;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2324,255,0 chrV 442900 . A G 2771 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.85;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2804,312,0 chrV 443051 . T C 1670 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.69;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1703,192,0 chrV 443089 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=21.26;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1776,201,0 chrV 443290 . T G 819 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=19.98;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:852,96,0 chrV 443296 . T C 743 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=19.05;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:776,87,0 chrV 443323 . A G 471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.707;QD=15.70;ReadPosRankSum=2.286;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:57:504,57,0 chrV 443413 . A G 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;QD=1.53;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:78,9,0 chrV 443414 . A T 52.97 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;QD=1.77;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:85,9,0 chrV 443416 . T G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;QD=1.43;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:75,9,0 chrV 443546 . T A 242 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=1;QD=8.64;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:1,27:28:30:275,30,0 chrV 449472 . C T 53.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=1;QD=6.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:9:86,9,0 chrV 449556 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=2.69;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:50,6,0 chrV 449577 . A T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=0;QD=6.37;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrV 449578 . A G 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=0;QD=6.37;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrV 449584 . A T 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.75;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:86,9,0 chrV 449586 . C A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.37;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrV 449588 . C A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.37;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:83,9,0 chrV 449608 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=4.63;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:83,9,0 chrV 449609 . A C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=4.45;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:81,9,0 chrV 449617 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=4.63;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:83,9,0 chrV 449759 . A T 354 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=10.41;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:387,42,0 chrV 449760 . T C 345 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=10.15;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:378,42,0 chrV 449868 . G A 553 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=14.18;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:586,63,0 chrV 449872 . A G 555 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=15.00;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:588,66,0 chrV 449908 . A G 397 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=8.10;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:49:51:430,51,0 chrV 450248 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=4.9209;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.33;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1251,135,0 chrV 450260 . C T 1264 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.59;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1297,141,0 chrV 450386 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.04;FS=0.000;HaplotypeScore=34.0257;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.59;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1463,162,0 chrV 451138 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1275,144,0 chrV 451909 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.12;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2208,252,0 chrV 452590 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.45;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1546,177,0 chrV 452629 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.72;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1539,165,0 chrV 452746 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.30;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1865,213,0 chrV 452827 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.12;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1397,153,0 chrV 452954 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.20;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1809,204,0 chrV 453437 . G C 1020 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.40;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1053,117,0 chrV 454697 . A C 2011 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.11;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2044,228,0 chrV 454721 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.42;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1703,180,0 chrV 454979 . A G 741 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=14.25;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:774,87,0 chrV 455275 . G A 563 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.11;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:596,66,0 chrV 455575 . A G 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.024;QD=23.37;ReadPosRankSum=1.695;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2206,246,0 chrV 455676 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.88;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1871,210,0 chrV 456048 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.24;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1630,180,0 chrV 456087 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=6.389;HaplotypeScore=4.5667;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.449;QD=17.63;ReadPosRankSum=2.247;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1549,174,0 chrV 456116 . A T 1194 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.06;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1227,135,0 chrV 457074 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.10;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1264,141,0 chrV 457376 . C G 2488 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.25;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2521,279,0 chrV 457524 . T A 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=81;Dels=0.00;FS=3.178;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.425;QD=22.42;ReadPosRankSum=1.688;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1849,198,0 chrV 457575 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.21;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2034,231,0 chrV 457596 . T C 2064 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3048;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.49;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2097,234,0 chrV 457805 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.42;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2075,228,0 chrV 457989 . G A 1410 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=15.33;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1443,159,0 chrV 458086 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.40;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2808,309,0 chrV 458181 . C G 2423 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.64;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,103:107:99:2456,276,0 chrV 458406 . A G 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=98;Dels=0.00;FS=3.055;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.590;QD=20.71;ReadPosRankSum=0.992;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2063,221,0 chrV 458604 . A T 1609 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=15.93;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1642,174,0 chrV 458610 . A G 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;MQRankSum=-0.326;QD=14.60;ReadPosRankSum=1.526;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1508,171,0 chrV 458619 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=14.74;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1374,147,0 chrV 458640 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=14.54;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1458,162,0 chrV 458865 . G A 2887 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.04;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2920,321,0 chrV 458964 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.94;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1887,210,0 chrV 459039 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.91;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1508,165,0 chrV 459145 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.14;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1354,150,0 chrV 459148 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.26;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1384,150,0 chrV 459185 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=16.15;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1616,183,0 chrV 459252 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.99;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1913,210,0 chrV 459399 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.57;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:964,111,0 chrV 459479 . T C 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.370;QD=19.31;ReadPosRankSum=1.577;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1327,147,0 chrV 459578 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.05;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1369,156,0 chrV 459581 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.732;QD=18.37;ReadPosRankSum=1.683;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,70:75:99:1411,159,0 chrV 459697 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.22;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1877,207,0 chrV 459740 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.79;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1348,153,0 chrV 459750 . A G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=69;Dels=0.00;FS=2.408;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-1.683;QD=18.01;ReadPosRankSum=2.774;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:3,64:69:99:1276,125,0 chrV 459831 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.97;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1251,141,0 chrV 460003 . C G 1629 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=15.82;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,99:103:99:1662,189,0 chrV 460008 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=16.26;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1773,204,0 chrV 460044 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=15.46;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:1780,201,0 chrV 460225 . A G 699 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=15.20;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:732,81,0 chrV 460408 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.82;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1856,210,0 chrV 460411 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.97;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1890,207,0 chrV 460898 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2641,303,0 chrV 462226 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=18.81;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2064,225,0 chrV 462614 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.16;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1021,114,0 chrV 463004 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=24.82;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1125,126,0 chrV 463157 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1209,132,0 chrV 464103 . C T 2247 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.40;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2280,249,0 chrV 464131 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=4.309;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.382;QD=22.38;ReadPosRankSum=1.693;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2047,225,0 chrV 464192 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.18;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2181,243,0 chrV 464210 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=17.44;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1864,201,0 chrV 464249 . T A 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=93;Dels=0.00;FS=2.612;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.360;QD=18.38;ReadPosRankSum=2.877;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1742,195,0 chrV 464291 . T C 2341 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.30;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2374,267,0 chrV 464494 . G A 2709 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.02;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2742,297,0 chrV 464736 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.77;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1861,201,0 chrV 465018 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.05;FS=0.000;HaplotypeScore=13.1952;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=13.39;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:850,93,0 chrV 465206 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.05;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1119,123,0 chrV 465644 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.67;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1832,207,0 chrV 465932 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.57;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:96:850,96,0 chrV 466823 . G C 1556 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.70;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1589,183,0 chrV 467312 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.14;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2119,243,0 chrV 467489 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.38;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2719,300,0 chrV 467553 . T C 2726 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.81;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2759,309,0 chrV 467708 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.608;DP=114;Dels=0.00;FS=4.887;HaplotypeScore=5.7710;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.608;QD=20.83;ReadPosRankSum=0.182;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2408,245,0 chrV 467945 . C G 1571 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.80;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1604,180,0 chrV 468178 . A G 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.848;QD=20.29;ReadPosRankSum=1.659;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,46:49:99:1027,114,0 chrV 468194 . T C 906 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.07;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:939,105,0 chrV 468234 . G C 834 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.40;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:867,99,0 chrV 468269 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.95;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1094,120,0 chrV 468645 . T C 2163 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.41;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2196,249,0 chrV 468798 . A G 2009 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.0261;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.45;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2042,234,0 chrV 468838 . A G 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=132;Dels=0.00;FS=2.428;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=0.790;QD=15.96;ReadPosRankSum=3.378;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2140,240,0 chrV 468941 . T C 3576.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.01;FS=0.000;HaplotypeScore=10.4764;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-0.847;QD=19.54;ReadPosRankSum=1.713;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,179:182:99:3576,399,0 chrV 469002 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.9577;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=9.61;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:879,99,0 chrV 469007 . C T 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-1.462;QD=10.82;ReadPosRankSum=-0.337;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:96:866,96,0 chrV 469111 . A C 1346 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.03;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1379,153,0 chrV 469112 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.86;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,153,0 chrV 469145 . T C 937 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=12.66;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:970,111,0 chrV 469150 . T G 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;MQRankSum=1.592;QD=12.57;ReadPosRankSum=0.047;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:963,108,0 chrV 469180 . C G 1008 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=12.14;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1041,117,0 chrV 469187 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=62.6069;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=12.15;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1029,111,0 chrV 469292 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.32;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2045,222,0 chrV 469297 . A T 1941 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=20.01;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1974,216,0 chrV 469325 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.59;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2134,237,0 chrV 469412 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=15.93;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1005,111,0 chrV 469422 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.98;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:882,99,0 chrV 469424 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=15.82;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:824,96,0 chrV 469975 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1695,186,0 chrV 470253 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.49;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1300,144,0 chrV 470259 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.33;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1188,129,0 chrV 471243 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=67;Dels=0.00;FS=5.864;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.985;QD=20.39;ReadPosRankSum=2.835;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1399,159,0 chrV 471723 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.231;QD=20.99;ReadPosRankSum=1.690;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1796,204,0 chrV 471759 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.19;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2186,237,0 chrV 471798 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.87;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2147,243,0 chrV 471807 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.87;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2219,246,0 chrV 471885 . A T 2645 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.23;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2678,291,0 chrV 471960 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.04;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2035,225,0 chrV 472051 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.38;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2629,285,0 chrV 472093 . C T 2787 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.64;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2820,306,0 chrV 472245 . A G 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=107;Dels=0.00;FS=2.401;HaplotypeScore=7.4306;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.125;QD=16.09;ReadPosRankSum=1.815;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:4,103:107:99:1755,195,0 chrV 472453 . G A 1034 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3375;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.68;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1067,117,0 chrV 472577 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2000,219,0 chrV 472664 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.0515;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.72;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2001,216,0 chrV 472738 . T C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=1.648;QD=20.33;ReadPosRankSum=1.690;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1700,189,0 chrV 472753 . A T 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=9.955;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=-1.034;QD=17.22;ReadPosRankSum=2.365;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1531,168,0 chrV 472756 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=15.96;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1390,156,0 chrV 472938 . G A 2480 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.20;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2513,273,0 chrV 473281 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.4430;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.61;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2303,261,0 chrV 473482 . A G 1816 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.74;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1849,213,0 chrV 473791 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=3.040;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.342;QD=17.40;ReadPosRankSum=2.340;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1599,180,0 chrV 473890 . G C 1317 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.46;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1350,156,0 chrV 473893 . C G 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=3.644;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=0.663;QD=16.60;ReadPosRankSum=1.689;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1394,159,0 chrV 473950 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.05;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1676,186,0 chrV 474031 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.58;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2560,282,0 chrV 474035 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.8786;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.17;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2468,267,0 chrV 474077 . T C 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.207;QD=19.03;ReadPosRankSum=1.700;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2126,240,0 chrV 474245 . A G 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=0.048;QD=15.85;ReadPosRankSum=1.684;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1190,138,0 chrV 474267 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=14.71;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1166,132,0 chrV 474268 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=14.90;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1210,135,0 chrV 474422 . A G 2860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-1.615;QD=18.94;ReadPosRankSum=1.709;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,148:151:99:2893,330,0 chrV 474470 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.03;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2278,255,0 chrV 474506 . C T 2122 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.1854;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.14;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2155,231,0 chrV 474569 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=14.95;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1124,123,0 chrV 474623 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.15;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1344,153,0 chrV 474722 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=14.68;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1119,129,0 chrV 474743 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=17.82;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1744,192,0 chrV 474802 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.68;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2049,228,0 chrV 474824 . G C 1746 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=14.80;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,113:118:99:1779,201,0 chrV 474860 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=15.69;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1900,207,0 chrV 475014 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=15.56;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1340,153,0 chrV 475088 . A C 1503 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.03;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1536,171,0 chrV 475151 . G C 1257 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=14.62;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1290,144,0 chrV 475154 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=16.10;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1321,147,0 chrV 475308 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7087;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1846,207,0 chrV 475496 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=89;Dels=0.00;FS=3.003;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.042;QD=19.91;ReadPosRankSum=2.394;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1805,204,0 chrV 475529 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.80;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:109:99:2300,249,0 chrV 475649 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.7581;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.00;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2313,255,0 chrV 476003 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.168;QD=20.56;ReadPosRankSum=2.375;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1390,159,0 chrV 476027 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.812;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.448;QD=18.57;ReadPosRankSum=1.675;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1166,135,0 chrV 476048 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.90;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1334,150,0 chrV 476183 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.36;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1582,177,0 chrV 476227 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.51;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1469,165,0 chrV 476296 . A T 1408 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.71;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1441,156,0 chrV 476465 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.299;QD=22.37;ReadPosRankSum=1.570;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1465,168,0 chrV 476681 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.23;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2241,252,0 chrV 476809 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.51;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1457,156,0 chrV 476888 . C T 2474 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.97;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2507,282,0 chrV 476891 . T C 2587 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.56;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2620,288,0 chrV 477110 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.87;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1731,189,0 chrV 477380 . T C 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=12.500;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.784;QD=16.69;ReadPosRankSum=2.685;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:1051,123,0 chrV 477413 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.79;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1530,171,0 chrV 477476 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.00;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1839,201,0 chrV 477830 . T A 2075 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.17;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2108,234,0 chrV 478373 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1305,147,0 chrV 478997 . T G 1017 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1050,117,0 chrV 479237 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.93;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1261,144,0 chrV 479528 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.21;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1645,186,0 chrV 479546 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.44;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1452,162,0 chrV 479721 . A G 1278 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.27;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1311,150,0 chrV 479743 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=17.45;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1342,147,0 chrV 479855 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.70;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1585,183,0 chrV 480036 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.04;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1876,216,0 chrV 480257 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.480;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.599;QD=18.28;ReadPosRankSum=1.688;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1459,165,0 chrV 480402 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.61;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1336,147,0 chrV 480485 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1451,162,0 chrV 480557 . C G 1467 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0507;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1500,168,0 chrV 480752 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=4.710;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.293;QD=20.58;ReadPosRankSum=1.683;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1494,168,0 chrV 481268 . C A 2014 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.89;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2047,225,0 chrV 481448 . T C 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.956;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.602;QD=19.83;ReadPosRankSum=1.694;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1877,210,0 chrV 481570 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.5329;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.62;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2091,234,0 chrV 481740 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=82;Dels=0.00;FS=11.313;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.284;QD=17.39;ReadPosRankSum=2.914;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1459,162,0 chrV 481814 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.41;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2033,234,0 chrV 482384 . G C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.310;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.115;QD=18.46;ReadPosRankSum=0.231;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,89:93:99:1750,201,0 chrV 482408 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.18;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1778,201,0 chrV 482754 . G T 1015 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.81;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1048,120,0 chrV 483430 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.56;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1391,159,0 chrV 483535 . A T 1293 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.52;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1326,147,0 chrV 483728 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.05;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1957,213,0 chrV 484002 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.62;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1932,219,0 chrV 484207 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.54;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1792,192,0 chrV 484306 . T A 1488 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1521,171,0 chrV 484412 . G C 1586 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.34;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1619,180,0 chrV 484500 . T C 1251 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.95;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1284,147,0 chrV 484537 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.10;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1581,174,0 chrV 484694 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1419,162,0 chrV 484910 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.48;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1303,144,0 chrV 484935 . A G 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.213;QD=19.90;ReadPosRankSum=1.617;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1227,138,0 chrV 485002 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.60;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1547,168,0 chrV 485135 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.17;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1727,186,0 chrV 485264 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.156;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.617;QD=20.68;ReadPosRankSum=1.674;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1253,141,0 chrV 485267 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.35;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1295,141,0 chrV 485312 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.02;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1334,150,0 chrV 485333 . A G 1150 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.49;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1183,135,0 chrV 485579 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.24;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1346,150,0 chrV 485936 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.00;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1633,183,0 chrV 485993 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=2.875;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.081;QD=21.20;ReadPosRankSum=2.385;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1644,183,0 chrV 486330 . A T 1476 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1509,162,0 chrV 486470 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.82;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1262,144,0 chrV 486812 . A G 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=58;Dels=0.00;FS=3.039;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.064;QD=17.09;ReadPosRankSum=2.322;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1024,114,0 chrV 486863 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.16;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1646,186,0 chrV 486920 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.27;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2873,315,0 chrV 486986 . T A 2834 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.62;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2867,321,0 chrV 487436 . T G 1436 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.12;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1469,165,0 chrV 487480 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=62.6048;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.38;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1467,162,0 chrV 487689 . A C 982 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=17.54;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1015,114,0 chrV 487792 . G C 1063 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=20.44;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1096,120,0 chrV 488195 . G C 252 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=5.36;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:33:285,33,0 chrV 488211 . T G 435 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.37;MQ0=0;QD=9.67;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:468,54,0 chrV 488214 . A G 455 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=9.89;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:54:488,54,0 chrV 488408 . T G 1649 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=21.70;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1682,189,0 chrV 488527 . T G 836 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=22.00;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:869,96,0 chrV 488534 . A G 813 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=21.39;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:846,93,0 chrV 488644 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.24;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1010,108,0 chrV 488650 . T C 963 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.65;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:996,111,0 chrV 488828 . T C 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-1.051;QD=16.69;ReadPosRankSum=1.675;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1051,120,0 chrV 488835 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.92;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1180,129,0 chrV 488899 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.70;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1465,159,0 chrV 489026 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.40;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1681,189,0 chrV 489879 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.36;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2130,234,0 chrV 489888 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=20.33;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1944,213,0 chrV 489897 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.54;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1792,198,0 chrV 490102 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.51;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,207,0 chrV 490207 . A G 2867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.782;QD=17.38;ReadPosRankSum=1.648;SB=-1.527e+03 GT:AD:DP:GQ:PL 1/1:1,163:165:99:2900,336,0 chrV 490243 . G A 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;DP=216;Dels=0.00;FS=0.000;HaplotypeScore=120.9821;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=2.193;QD=5.38;ReadPosRankSum=0.788;SB=-1.781e+03 GT:AD:DP:GQ:PL 1/1:2,209:216:99:1195,132,0 chrV 490291 . G A 4243.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=1.9494;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.46;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,243:243:99:4243,465,0 chrV 490294 . A G 4045.01 PASS AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.65;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,241:243:99:4045,456,0 chrV 490306 . A G 4185.01 PASS AC=2;AF=1.00;AN=2;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.96;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,233:233:99:4185,459,0 chrV 490395 . C T 2088 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.26;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,116:121:99:2121,228,0 chrV 490402 . A G 1897 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=4.331;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;MQRankSum=0.199;QD=15.55;ReadPosRankSum=1.562;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:1930,213,0 chrV 490405 . A G 1743 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=14.77;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1776,207,0 chrV 490456 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=14.78;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1777,201,0 chrV 490516 . A C 1854 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.18;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1887,216,0 chrV 490694 . T C 2743 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.05;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2776,312,0 chrV 490952 . C T 2082 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.69;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2115,231,0 chrV 491135 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.27;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2181,249,0 chrV 491171 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1964,216,0 chrV 491222 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1556,177,0 chrV 491262 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.95;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1163,132,0 chrV 491424 . G A 2507 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2540,276,0 chrV 491522 . C T 3375.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.46;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3375,375,0 chrV 491556 . T C 2467 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.50;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2500,273,0 chrV 491617 . T A 765 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.63;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:798,93,0 chrV 491806 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.37;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1778,204,0 chrV 491911 . A G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.840;QD=13.12;ReadPosRankSum=1.680;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:899,102,0 chrV 492005 . G T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;DP=30;Dels=0.00;FS=34.056;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=-0.167;QD=0.50;ReadPosRankSum=-2.282;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:25,5:30:45:45,0,123 chrV 492129 . C T 762 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.72;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:795,87,0 chrV 492163 . A G 386 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=14.30;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:419,48,0 chrV 492293 . A G 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=4.771;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=-1.288;QD=21.08;ReadPosRankSum=1.644;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:855,99,0 chrV 498517 . G A 71.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=3.11;SB=-1.345e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:12:104,12,0 chrV 498534 . G A 161.06 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;QD=4.88;SB=-2.251e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:21:194,21,0 chrV 498551 . G A 237 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=7.65;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:30:270,30,0 chrV 498872 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.78;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1971,213,0 chrV 498940 . A G 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.367;HaplotypeScore=66.6891;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;MQRankSum=-0.211;QD=18.50;ReadPosRankSum=1.690;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1550,186,0 chrV 498952 . A C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=0.702;QD=17.72;ReadPosRankSum=0.187;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1344,153,0 chrV 498959 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=20.03;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1415,156,0 chrV 499040 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.95;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1311,150,0 chrV 499333 . T G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.297;QD=20.17;ReadPosRankSum=2.409;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2473,279,0 chrV 499353 . T G 2407 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.11;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2440,273,0 chrV 499401 . A T 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=113;Dels=0.00;FS=5.579;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.990;QD=19.58;ReadPosRankSum=0.773;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2246,240,0 chrV 499569 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.85;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2460,273,0 chrV 499617 . A G 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.720;QD=15.72;ReadPosRankSum=1.579;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1809,207,0 chrV 499716 . C T 2627 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.37;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2660,291,0 chrV 499817 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1643,183,0 chrV 499876 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.99;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1775,198,0 chrV 500515 . A C 1554 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.89;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1587,180,0 chrV 500567 . G T 1785 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.59;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1818,201,0 chrV 500606 . T A 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=87;Dels=0.00;FS=3.656;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.358;QD=19.05;ReadPosRankSum=2.307;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1690,189,0 chrV 500619 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.37;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1602,180,0 chrV 500783 . G T 1502 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.03;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1535,168,0 chrV 500798 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.84;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1246,141,0 chrV 500804 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.30;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1365,147,0 chrV 500850 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0607;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=14.43;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1303,144,0 chrV 500985 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.62;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1636,183,0 chrV 501311 . A T 1693 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.15;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1726,189,0 chrV 501338 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4269;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.26;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1734,189,0 chrV 501707 . G T 2084 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7351;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.04;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2117,231,0 chrV 501719 . A T 1756 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.14;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1789,204,0 chrV 501989 . T G 2094 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.73;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2127,240,0 chrV 502037 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.216;QD=20.98;ReadPosRankSum=1.641;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2446,273,0 chrV 502070 . A G 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6855;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.590;QD=19.47;ReadPosRankSum=1.704;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2428,273,0 chrV 502151 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=17.64;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2150,243,0 chrV 502169 . T G 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=3.979;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.837;QD=15.30;ReadPosRankSum=1.703;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:1884,213,0 chrV 502185 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=16.37;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1621,177,0 chrV 502220 . A G 1528 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=14.83;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1561,174,0 chrV 502898 . A T 1347 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.49;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1380,150,0 chrV 502911 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=15.78;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1280,144,0 chrV 502995 . T A 2212 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.07;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2245,243,0 chrV 504179 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=17.35;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1213,132,0 chrV 504185 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=15.04;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1101,120,0 chrV 504197 . T A 845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;MQRankSum=1.299;QD=11.74;ReadPosRankSum=1.588;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:96:878,96,0 chrV 504211 . A C 674 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.91;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:81:707,81,0 chrV 504218 . A G 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=-0.052;QD=10.20;ReadPosRankSum=1.680;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:81:706,81,0 chrV 504280 . G C 1266 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=16.23;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1299,150,0 chrV 504309 . C A 1338 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.38;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1371,150,0 chrV 504324 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=14.58;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1331,156,0 chrV 504333 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5118;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.05;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1542,165,0 chrV 504531 . A G 2142 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5791;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.80;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2175,249,0 chrV 504588 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.35;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1702,183,0 chrV 504616 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.12;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1934,207,0 chrV 504710 . T C 1136 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.23;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1169,132,0 chrV 504711 . A T 1132 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.17;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1165,129,0 chrV 504773 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=17.55;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1806,195,0 chrV 504934 . C T 2513 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.43;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2546,285,0 chrV 505198 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.27;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2288,249,0 chrV 505259 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.49;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2289,255,0 chrV 505472 . G A 2418 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.18;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2451,267,0 chrV 505622 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.93;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1775,204,0 chrV 505646 . T C 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=93;Dels=0.00;FS=7.520;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.843;QD=19.74;ReadPosRankSum=2.396;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1869,213,0 chrV 506735 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.16;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2294,249,0 chrV 506870 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.00;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2241,240,0 chrV 507153 . C A 2167 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.57;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2200,240,0 chrV 507380 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.39;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1573,177,0 chrV 507527 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.19;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2230,237,0 chrV 508179 . A G 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.0116;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.357;QD=17.31;ReadPosRankSum=1.649;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1487,168,0 chrV 508274 . T C 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=3.126;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.641;QD=20.61;ReadPosRankSum=1.687;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1620,183,0 chrV 508371 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.42;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1140,129,0 chrV 508409 . C T 955 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.36;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:988,108,0 chrV 508586 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.43;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1136,123,0 chrV 508632 . C G 1244 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.82;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1277,144,0 chrV 508911 . A G 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.913;QD=19.11;ReadPosRankSum=1.480;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1084,123,0 chrV 509188 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2019,216,0 chrV 509583 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=116;Dels=0.00;FS=3.332;HaplotypeScore=14.1596;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.155;QD=17.17;ReadPosRankSum=1.608;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,111:116:99:2025,228,0 chrV 509654 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.24;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1732,189,0 chrV 509902 . G T 2044 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2077,225,0 chrV 509938 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.07;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1997,228,0 chrV 510112 . G A 844 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:877,96,0 chrV 510191 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.30;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1170,126,0 chrV 511431 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.37;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1744,201,0 chrV 511509 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0467;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.44;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1806,204,0 chrV 511641 . T A 800 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.39;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:833,90,0 chrV 511800 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=4.063;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.899;QD=18.89;ReadPosRankSum=1.688;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1544,177,0 chrV 511824 . C T 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;DP=76;Dels=0.00;FS=5.006;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.729;QD=15.66;ReadPosRankSum=1.140;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1223,113,0 chrV 512058 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1285,141,0 chrV 512664 . C G 1150 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.54;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1183,135,0 chrV 512715 . A T 1012 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.65;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1045,111,0 chrV 513154 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.04;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2215,246,0 chrV 513385 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.55;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1480,159,0 chrV 513424 . A T 1163 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.62;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1196,132,0 chrV 513475 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.70;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1259,135,0 chrV 513481 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.59;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1169,123,0 chrV 513941 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=15.92;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1052,117,0 chrV 514323 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1589,168,0 chrV 516748 . T C 2928 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.3974;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.22;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2961,333,0 chrV 516916 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.73;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1513,174,0 chrV 516940 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.58;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1844,204,0 chrV 517529 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1592;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.690;QD=18.23;ReadPosRankSum=-0.772;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1546,174,0 chrV 518407 . T A 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=4.007;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.622;QD=20.89;ReadPosRankSum=1.688;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1683,186,0 chrV 518446 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.66;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1874,210,0 chrV 518464 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.10;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1956,213,0 chrV 519091 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.12;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1421,159,0 chrV 519649 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.91;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1957,219,0 chrV 519684 . C G 1707 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.62;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1740,195,0 chrV 519704 . C A 1842 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.99;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,93:97:99:1875,204,0 chrV 520915 . A T 1491 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.94;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1524,165,0 chrV 521007 . T A 1219 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.40;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1252,135,0 chrV 521119 . G A 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=3.285;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.530;QD=20.58;ReadPosRankSum=0.035;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1062,117,0 chrV 521308 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.66;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1302,147,0 chrV 521374 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.61;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1254,138,0 chrV 521398 . A G 1016 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.09;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1049,117,0 chrV 521557 . T A 1149 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.47;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1182,132,0 chrV 521706 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.22;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1603,171,0 chrV 522319 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.77;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2445,273,0 chrV 522358 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=21.70;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1986,222,0 chrV 522505 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=16.1742;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.00;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1988,219,0 chrV 522683 . C A 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=0.737;QD=18.40;ReadPosRankSum=1.115;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1928,213,0 chrV 522685 . T C 1810 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=18.10;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1843,207,0 chrV 522702 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=15.06;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1539,168,0 chrV 522704 . A T 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=0.701;QD=15.56;ReadPosRankSum=2.846;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1573,171,0 chrV 522739 . A C 1006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-0.993;QD=13.41;ReadPosRankSum=1.686;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1039,120,0 chrV 522899 . C T 664 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=13.28;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:697,84,0 chrV 522900 . C A 545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.848;QD=11.60;ReadPosRankSum=1.585;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:69:578,69,0 chrV 523179 . A G 1078 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.94;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1111,123,0 chrV 523260 . C A 1635 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.09;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1668,180,0 chrV 523683 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=71;Dels=0.00;FS=3.917;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.628;QD=22.62;ReadPosRankSum=1.682;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1639,183,0 chrV 524223 . A G 1058 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.04;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1091,123,0 chrV 524394 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.70;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1503,165,0 chrV 524484 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.22;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:892,96,0 chrV 524497 . G C 664 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.47;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:697,78,0 chrV 524520 . C T 646 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.00;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:679,75,0 chrV 525075 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.93;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1919,222,0 chrV 525805 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.07;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1940,210,0 chrV 526712 . A T 391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1810;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.679;QD=16.29;ReadPosRankSum=2.246;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,22:24:45:424,45,0 chrV 527192 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.551;QD=23.68;ReadPosRankSum=2.374;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1572,177,0 chrV 527435 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.40;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1713,183,0 chrV 527822 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.1372;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.75;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1195,132,0 chrV 527960 . C G 1132 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1165,129,0 chrV 528932 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.72;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2096,231,0 chrV 529325 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.15;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1979,222,0 chrV 529484 . G T 1841 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.41;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1874,204,0 chrV 529707 . T G 1107 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1140,132,0 chrV 530348 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.34;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2334,258,0 chrV 530754 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.07;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2020,219,0 chrV 530762 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.68;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2018,219,0 chrV 531187 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.35;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1678,186,0 chrV 531795 . T G 1364 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.00;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1397,156,0 chrV 532728 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.84;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1819,204,0 chrV 532763 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.13;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2115,228,0 chrV 533214 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.34;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2087,234,0 chrV 533244 . C A 2051 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.05;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2084,228,0 chrV 534650 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.77;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1632,180,0 chrV 535342 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.01;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1897,213,0 chrV 535431 . T A 1313 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.64;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1346,147,0 chrV 535565 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.65;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1703,189,0 chrV 535583 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.69;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1785,201,0 chrV 536075 . C T 2688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.5236;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.112;QD=21.85;ReadPosRankSum=1.422;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2721,297,0 chrV 536455 . T A 2544 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.93;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2577,282,0 chrV 536698 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.17;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2352,258,0 chrV 536714 . T C 2147 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.83;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2180,246,0 chrV 537238 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.90;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1873,207,0 chrV 537307 . C T 2488 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.99;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2521,285,0 chrV 537745 . A G 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.185;QD=21.45;ReadPosRankSum=1.659;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2071,234,0 chrV 537801 . A C 1362 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1395,156,0 chrV 537913 . G C 1370 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.46;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1403,159,0 chrV 537978 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.61;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1084,120,0 chrV 538329 . A T 596 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.03;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:629,69,0 chrV 538371 . A T 130.13 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:18:163,18,0 chrV 538430 . A G 1045 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.49;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1078,120,0 chrV 538629 . G T 1010 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.05;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1043,114,0 chrV 538885 . G C 1562 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.82;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1595,177,0 chrV 538899 . T C 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=3.002;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-0.989;QD=19.51;ReadPosRankSum=2.393;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1711,192,0 chrV 538953 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=16.68;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1234,138,0 chrV 539053 . G C 1961 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.79;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1994,219,0 chrV 539462 . T G 1104 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.44;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1137,129,0 chrV 540028 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.04;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2084,228,0 chrV 540722 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.07;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1821,204,0 chrV 541518 . T C 344.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=53;Dels=0.00;FS=17.544;HaplotypeScore=30.9479;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-0.224;QD=6.49;ReadPosRankSum=-0.970;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:32,21:53:39:374,0,39 chrV 541873 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.52;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1905,204,0 chrV 542508 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.81;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1298,144,0 chrV 542582 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.22;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1403,156,0 chrV 542715 . C G 1340 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1373,156,0 chrV 542893 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.47;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:938,108,0 chrV 542915 . C A 980 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.00;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1013,108,0 chrV 542939 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=14.23;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:87:787,87,0 chrV 542994 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=13.90;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:742,84,0 chrV 543103 . T C 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.184;QD=18.40;ReadPosRankSum=1.659;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:898,99,0 chrV 543417 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1449,153,0 chrV 543765 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1657,177,0 chrV 544042 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1122,129,0 chrV 544116 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.07;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1887,207,0 chrV 544296 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=9.233;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.668;QD=21.42;ReadPosRankSum=2.391;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1811,204,0 chrV 545025 . G T 1277 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.49;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1310,141,0 chrV 545109 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.36;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1795,204,0 chrV 545207 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=10.37;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:531,60,0 chrV 545269 . T C 563 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=16.56;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:596,69,0 chrV 545863 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.01;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1326,153,0 chrV 546069 . A C 1134 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.29;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1167,132,0 chrV 546108 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1113,120,0 chrV 546141 . T A 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.771;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=16.17;ReadPosRankSum=1.617;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1003,111,0 chrV 546421 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.30;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:794,93,0 chrV 546436 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4104;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.88;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1164,129,0 chrV 546545 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.16;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1886,213,0 chrV 546721 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.91;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1568,177,0 chrV 546766 . T G 1484 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.82;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1517,171,0 chrV 547317 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.14;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1664,189,0 chrV 547398 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.43;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:105:99:1863,213,0 chrV 547434 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.71;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1737,192,0 chrV 548298 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=24.10;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1455,162,0 chrV 548318 . G A 742 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.53;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:775,87,0 chrV 548325 . A G 680 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.61;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:713,78,0 chrV 548345 . A G 657 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.25;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:690,78,0 chrV 548692 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.98;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1568,180,0 chrV 548824 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.337;QD=23.25;ReadPosRankSum=1.192;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1823,207,0 chrV 549010 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.85;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1655,180,0 chrV 549124 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.6235;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.463;QD=21.61;ReadPosRankSum=1.232;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,89:94:99:2064,231,0 chrV 549238 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.54;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1831,207,0 chrV 549289 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.45;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1170,132,0 chrV 549412 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.61;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1762,192,0 chrV 549585 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.46;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1711,186,0 chrV 549631 . A G 1344 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.03;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1377,159,0 chrV 549660 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=65;Dels=0.00;FS=2.783;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.247;QD=21.09;ReadPosRankSum=2.374;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1404,159,0 chrV 549690 . A C 1161 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.35;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1194,135,0 chrV 549693 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.80;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1281,138,0 chrV 550011 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.44;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1219,132,0 chrV 550284 . T C 1038 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.90;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1071,120,0 chrV 551150 . A G 1916 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.91;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1949,216,0 chrV 551283 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.409;QD=18.34;ReadPosRankSum=1.071;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2050,234,0 chrV 551677 . C A 2264 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.3082;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.98;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2297,249,0 chrV 551830 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.05;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2075,228,0 chrV 552602 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.26;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1816,204,0 chrV 552684 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.86;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1804,201,0 chrV 552710 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.16;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1686,183,0 chrV 552902 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.17;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1758,198,0 chrV 553016 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.28;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1416,153,0 chrV 553226 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.45;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1066,120,0 chrV 553261 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.82;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1102,123,0 chrV 553262 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.45;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1080,120,0 chrV 553727 . A G 3574.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.3039;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.20;SB=-1.888e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3574,402,0 chrV 553766 . T A 3015 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.67;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3048,327,0 chrV 553849 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.22;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1226,132,0 chrV 554060 . G T 2380 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.35;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2413,267,0 chrV 554157 . C T 944 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=20.09;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:977,105,0 chrV 554160 . G A 834 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=18.13;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:867,96,0 chrV 554162 . A G 755 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=4.130;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=-0.709;QD=17.16;ReadPosRankSum=1.575;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:93:788,93,0 chrV 554200 . C T 377 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=10.19;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:45:410,45,0 chrV 554330 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.84;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1246,135,0 chrV 554338 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=17.46;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1273,138,0 chrV 554357 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=15.43;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1082,117,0 chrV 554406 . T G 617 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;MQRankSum=-1.251;QD=8.57;ReadPosRankSum=1.684;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:72:650,72,0 chrV 554409 . G A 675 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=9.51;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:78:708,78,0 chrV 554414 . C T 575 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.58;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:66:608,66,0 chrV 554416 . A G 516 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.60;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:63:549,63,0 chrV 554422 . C A 593 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=8.59;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:66:626,66,0 chrV 554437 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=12.02;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1055,117,0 chrV 554490 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.72;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1727,189,0 chrV 555256 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.04;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1496,165,0 chrV 555399 . T C 527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=6.829;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.079;QD=9.94;ReadPosRankSum=1.667;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:63:560,63,0 chrV 555417 . C A 751 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=13.18;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:784,87,0 chrV 555518 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.75;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1360,153,0 chrV 555951 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.19;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2143,234,0 chrV 556080 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5559;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.10;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1542,177,0 chrV 556205 . A C 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.258;QD=18.42;ReadPosRankSum=1.696;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1783,198,0 chrV 556281 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.02;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1650,177,0 chrV 556443 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.31;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1292,138,0 chrV 556607 . A G 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.567;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.398;QD=23.10;ReadPosRankSum=1.649;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1950,219,0 chrV 556662 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.01;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1309,144,0 chrV 556665 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=15.22;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1022,111,0 chrV 556749 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.12;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1361,153,0 chrV 556791 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.58;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1716,189,0 chrV 557076 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.78;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1180,132,0 chrV 557148 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.82;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1386,156,0 chrV 557265 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.39;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2026,219,0 chrV 557316 . A C 1791 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.84;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1824,204,0 chrV 557355 . A G 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=83;Dels=0.00;FS=9.233;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.609;QD=23.71;ReadPosRankSum=2.361;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2001,222,0 chrV 557520 . T G 1311 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.73;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1344,150,0 chrV 557523 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.90;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1337,153,0 chrV 557574 . G C 1190 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.66;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1223,141,0 chrV 557616 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.92;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1849,207,0 chrV 558392 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.1770;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.909;QD=20.37;ReadPosRankSum=1.689;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1663,189,0 chrV 558441 . T A 1360 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.30;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1393,150,0 chrV 558717 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=5.2828;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.444;QD=20.92;ReadPosRankSum=2.373;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1372,153,0 chrV 559099 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.43;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2133,246,0 chrV 559384 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.41;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1992,216,0 chrV 559786 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.400;DP=73;Dels=0.00;FS=3.862;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.447;QD=18.08;ReadPosRankSum=1.685;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1353,156,0 chrV 560376 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.04;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1530,174,0 chrV 560389 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=2.979;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.182;QD=19.18;ReadPosRankSum=0.966;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1721,176,0 chrV 560686 . A G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.250;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.689;QD=20.91;ReadPosRankSum=1.695;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2019,228,0 chrV 560715 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.282;QD=21.47;ReadPosRankSum=1.594;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2180,246,0 chrV 560838 . A G 2538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.354;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.700;QD=23.28;ReadPosRankSum=1.700;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2571,294,0 chrV 561056 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.81;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1858,210,0 chrV 561309 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5612;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=18.74;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1382,156,0 chrV 561364 . T A 961 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.29;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:994,111,0 chrV 561421 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.65;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1233,132,0 chrV 561430 . A T 1292 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.19;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1325,144,0 chrV 561460 . A T 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.787;QD=18.70;ReadPosRankSum=1.642;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1473,165,0 chrV 561486 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.34;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1348,150,0 chrV 561794 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.17;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1870,201,0 chrV 561993 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.35;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1824,201,0 chrV 562065 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.64;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2137,234,0 chrV 562113 . C G 2901 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.59;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2934,336,0 chrV 562149 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.33;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2646,282,0 chrV 562315 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.01;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1479,168,0 chrV 562899 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.92;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1665,180,0 chrV 562916 . G C 1644 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.35;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1677,186,0 chrV 562995 . A T 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-1.732;QD=17.15;ReadPosRankSum=1.683;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1251,122,0 chrV 563000 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.85;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1371,150,0 chrV 563066 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.46;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1337,150,0 chrV 563196 . C A 1702 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.97;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1735,186,0 chrV 563225 . G C 1643 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.16;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1676,186,0 chrV 563249 . T G 1483 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=23.92;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1516,171,0 chrV 563507 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.76;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1495,162,0 chrV 563513 . A G 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.655;QD=18.28;ReadPosRankSum=1.685;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1386,159,0 chrV 563560 . A T 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.693;QD=20.54;ReadPosRankSum=1.663;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1060,114,0 chrV 563605 . T C 640 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=18.29;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:673,75,0 chrV 563608 . G A 633 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=17.58;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:666,75,0 chrV 563620 . T A 463 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=14.47;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:496,54,0 chrV 563642 . T C 362 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=11.31;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:45:395,45,0 chrV 563646 . T G 350 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=10.29;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:383,45,0 chrV 563661 . T A 413 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=11.47;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:446,48,0 chrV 563962 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.97;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1710,192,0 chrV 564022 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=23.36;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1902,210,0 chrV 564052 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-0.968;QD=19.09;ReadPosRankSum=1.681;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1350,153,0 chrV 564065 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.47;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1186,135,0 chrV 564395 . T G 957 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.50;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:990,111,0 chrV 564397 . C T 966 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=16.95;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:999,111,0 chrV 564921 . A G 388 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:48:421,48,0 chrV 565007 . C T 526 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=13.49;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:60:559,60,0 chrV 565382 . A C 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=67;Dels=0.04;FS=0.000;HaplotypeScore=9.9471;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.294;QD=19.54;ReadPosRankSum=2.372;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1342,150,0 chrV 565448 . A G 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.480;QD=20.51;ReadPosRankSum=1.669;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1161,132,0 chrV 565488 . T C 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=9.890;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.024;QD=18.62;ReadPosRankSum=2.213;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1001,117,0 chrV 565574 . A T 2217 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2684;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.17;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2250,246,0 chrV 566018 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.6154;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.16;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3279,366,0 chrV 566309 . G A 2540 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.32;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2573,282,0 chrV 566370 . C T 3931.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-1.881e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3931,423,0 chrV 566642 . G A 2610 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.12;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2643,282,0 chrV 566870 . T C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;DP=116;Dels=0.00;FS=2.385;HaplotypeScore=10.7411;MLEAC=1;MLEAF=0.500;MQ=55.14;MQ0=1;MQRankSum=-5.097;QD=0.18;ReadPosRankSum=2.020;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,15:116:51:51,0,2023 chrV 566875 . C A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=117;Dels=0.01;FS=7.089;HaplotypeScore=10.7411;MLEAC=1;MLEAF=0.500;MQ=55.18;MQ0=1;MQRankSum=-5.727;QD=0.49;ReadPosRankSum=1.098;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,18:116:87:87,0,1829 chrV 567207 . T G 1645 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.13;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1678,189,0 chrV 567221 . G C 1672 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.79;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1705,192,0 chrV 567335 . G C 1300 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.41;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1333,150,0 chrV 567437 . G T 1396 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.53;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1429,156,0 chrV 567754 . C G 867 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=14.95;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:900,102,0 chrV 567774 . A G 743 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=11.98;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:87:776,87,0 chrV 567779 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=11.65;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:87:802,87,0 chrV 567798 . C A 653 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=9.46;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:75:686,75,0 chrV 567800 . C G 617 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=8.81;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:75:650,75,0 chrV 567819 . G A 425 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8891;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=5.00;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:51:458,51,0 chrV 567944 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=161;Dels=0.00;FS=3.013;HaplotypeScore=9.4988;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.545;QD=21.32;ReadPosRankSum=2.419;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:2,158:161:99:3432,390,0 chrV 568123 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=21.73;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2467,276,0 chrV 568383 . A G 4293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=11.9561;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.213;QD=20.74;ReadPosRankSum=1.715;SB=-2.522e+03 GT:AD:DP:GQ:PL 1/1:1,206:207:99:4293,486,0 chrV 568456 . G A 3690.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.1006;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.39;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3690,411,0 chrV 568571 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.8267;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=13.27;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:1798,201,0 chrV 568718 . C G 2620 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.1226;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.32;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,139:143:99:2653,297,0 chrV 569619 . C T 1625 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DP=179;Dels=0.00;FS=19.628;HaplotypeScore=86.2918;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=16;MQRankSum=0.078;QD=9.08;ReadPosRankSum=-1.393;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:6,172:179:99:1658,183,0 chrV 569626 . G A 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DP=184;Dels=0.00;FS=80.111;HaplotypeScore=126.3464;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=15;MQRankSum=-1.931;QD=0.23;ReadPosRankSum=-0.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:127,50:184:72:72,0,939 chrV 569627 . G A 1051.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.943;DP=195;Dels=0.00;FS=59.600;HaplotypeScore=106.3320;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=15;MQRankSum=1.031;QD=5.39;ReadPosRankSum=5.087;SB=-7.435e+02 GT:AD:DP:GQ:PL 1/1:24,154:195:12:1084,12,0 chrV 569670 . T C 631.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;DP=248;Dels=0.00;FS=185.999;HaplotypeScore=75.0118;MLEAC=1;MLEAF=0.500;MQ=33.67;MQ0=8;MQRankSum=-9.011;QD=2.54;ReadPosRankSum=6.986;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:167,81:248:99:661,0,2681 chrV 569673 . T C 345.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.752;DP=250;Dels=0.00;FS=137.287;HaplotypeScore=77.9922;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=8;MQRankSum=-5.475;QD=1.38;ReadPosRankSum=4.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:195,55:250:99:375,0,2732 chrV 569706 . A T 1137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DP=286;Dels=0.00;FS=293.627;HaplotypeScore=35.6768;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=3;MQRankSum=-11.767;QD=3.98;ReadPosRankSum=-1.998;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:160,126:286:99:1167,0,3107 chrV 569726 . G A 2545.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.664;DP=243;Dels=0.00;FS=269.556;HaplotypeScore=64.4560;MLEAC=1;MLEAF=0.500;MQ=37.83;MQ0=7;MQRankSum=8.671;QD=10.47;ReadPosRankSum=-2.014;SB=-5.530e+02 GT:AD:DP:GQ:PL 0/1:91,152:243:99:2575,0,717 chrV 569735 . T C 265.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;DP=232;Dels=0.00;FS=123.299;HaplotypeScore=60.2986;MLEAC=1;MLEAF=0.500;MQ=35.90;MQ0=13;MQRankSum=-7.851;QD=1.14;ReadPosRankSum=5.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,51:232:99:295,0,2322 chrV 569739 . T C 1973.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;DP=226;Dels=0.00;FS=306.179;HaplotypeScore=59.0135;MLEAC=1;MLEAF=0.500;MQ=34.21;MQ0=15;MQRankSum=9.444;QD=8.73;ReadPosRankSum=0.333;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:109,116:226:99:2003,0,618 chrV 569746 . G A 2026.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.640;DP=222;Dels=0.00;FS=138.015;HaplotypeScore=78.5478;MLEAC=1;MLEAF=0.500;MQ=33.21;MQ0=18;MQRankSum=7.154;QD=9.13;ReadPosRankSum=-0.269;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:76,146:222:99:2056,0,514 chrV 569747 . G A 269.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.013;DP=227;Dels=0.00;FS=100.570;HaplotypeScore=78.5478;MLEAC=1;MLEAF=0.500;MQ=32.97;MQ0=18;MQRankSum=-6.873;QD=1.19;ReadPosRankSum=2.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:177,49:227:99:299,0,2201 chrV 569767 . G A 1953.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;DP=223;Dels=0.00;FS=150.779;HaplotypeScore=55.3643;MLEAC=1;MLEAF=0.500;MQ=31.97;MQ0=24;MQRankSum=4.249;QD=8.76;ReadPosRankSum=-1.561;SB=-7.100e+02 GT:AD:DP:GQ:PL 0/1:84,136:223:99:1983,0,244 chrV 569806 . G A 1543.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.273;DP=253;Dels=0.00;FS=21.020;HaplotypeScore=166.5439;MLEAC=1;MLEAF=0.500;MQ=20.98;MQ0=36;MQRankSum=-1.197;QD=6.10;ReadPosRankSum=1.627;SB=-1.280e+03 GT:AD:DP:GQ:PL 0/1:49,202:253:99:1573,0,235 chrV 569809 . G A 549.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;DP=256;Dels=0.00;FS=251.348;HaplotypeScore=149.6811;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=36;MQRankSum=6.949;QD=2.14;ReadPosRankSum=1.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:202,54:256:99:579,0,1220 chrV 569812 . T G 879.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DP=267;Dels=0.00;FS=69.510;HaplotypeScore=158.9446;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=36;MQRankSum=1.554;QD=3.29;ReadPosRankSum=1.182;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:137,119:267:99:909,0,888 chrV 569815 . A G 548.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DP=267;Dels=0.00;FS=257.197;HaplotypeScore=158.7400;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=36;MQRankSum=6.141;QD=2.05;ReadPosRankSum=0.827;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:213,54:267:99:578,0,1160 chrV 569838 . A G 3001 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.997;DP=309;Dels=0.00;FS=10.331;HaplotypeScore=32.3766;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=30;MQRankSum=1.338;QD=9.71;ReadPosRankSum=-0.565;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:9,300:309:99:3034,303,0 chrV 569869 . G A 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;DP=413;Dels=0.00;FS=238.756;HaplotypeScore=233.3491;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=33;MQRankSum=5.487;QD=0.63;ReadPosRankSum=-0.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:343,70:413:99:289,0,4021 chrV 569875 . G A 458.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.882;DP=396;Dels=0.00;FS=20.158;HaplotypeScore=213.4213;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=31;MQRankSum=2.256;QD=1.16;ReadPosRankSum=1.891;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:310,86:396:99:488,0,3623 chrV 569889 . T G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729;DP=349;Dels=0.00;FS=145.856;HaplotypeScore=176.6150;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=25;MQRankSum=4.808;QD=0.31;ReadPosRankSum=-2.305;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:277,58:349:99:138,0,3836 chrV 569890 . T A 186.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=348;Dels=0.00;FS=96.433;HaplotypeScore=166.0184;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=24;MQRankSum=6.372;QD=0.53;ReadPosRankSum=-3.469;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:275,73:348:99:216,0,3881 chrV 569916 . A G 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.607;DP=305;Dels=0.00;FS=84.803;HaplotypeScore=164.5476;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=13;MQRankSum=1.617;QD=0.44;ReadPosRankSum=-1.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:248,57:305:99:163,0,3631 chrV 569918 . G A 597.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;DP=302;Dels=0.00;FS=6.906;HaplotypeScore=138.8167;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=12;MQRankSum=0.800;QD=1.98;ReadPosRankSum=-2.236;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:228,74:302:99:627,0,2982 chrV 569943 . G A 325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.673;DP=159;Dels=0.00;FS=72.637;HaplotypeScore=448.3862;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=2;MQRankSum=1.377;QD=2.04;ReadPosRankSum=1.283;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:92,67:159:99:355,0,1147 chrV 569968 . C G 207.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=96.5587;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=1;MQRankSum=2.992;QD=1.71;ReadPosRankSum=-6.700;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:81,40:121:99:237,0,640 chrV 569971 . A G 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;DP=118;Dels=0.00;FS=3.116;HaplotypeScore=92.7064;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=1;MQRankSum=2.991;QD=1.81;ReadPosRankSum=-7.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,36:118:99:244,0,563 chrV 569974 . C T 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.484;DP=78;Dels=0.00;FS=67.831;HaplotypeScore=57.2502;MLEAC=1;MLEAF=0.500;MQ=21.62;MQ0=1;MQRankSum=-0.175;QD=2.90;ReadPosRankSum=3.035;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:32,43:78:99:256,0,186 chrV 569983 . T G 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;DP=65;Dels=0.00;FS=28.477;HaplotypeScore=10.8796;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=2;MQRankSum=-0.440;QD=1.06;ReadPosRankSum=3.098;SB=-4.006e+00 GT:AD:DP:GQ:PL 0/1:23,39:65:99:99,0,121 chrV 569990 . G T 118.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.022;DP=64;Dels=0.00;FS=35.128;HaplotypeScore=21.4531;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=2;MQRankSum=-0.991;QD=1.84;ReadPosRankSum=3.818;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:25,39:64:99:148,0,114 chrV 569992 . G A 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=63;Dels=0.00;FS=36.531;HaplotypeScore=31.7223;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=2;MQRankSum=-1.524;QD=1.92;ReadPosRankSum=3.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,39:63:99:151,0,117 chrV 569994 . G A 240.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=62;Dels=0.00;FS=5.406;HaplotypeScore=34.6921;MLEAC=2;MLEAF=1.00;MQ=21.80;MQ0=2;MQRankSum=-2.028;QD=3.88;ReadPosRankSum=3.598;SB=-1.616e+02 GT:AD:DP:GQ:PL 1/1:7,54:62:11:273,11,0 chrV 570039 . C T 156.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DP=50;Dels=0.02;FS=13.802;HaplotypeScore=15.6948;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=1;MQRankSum=-1.227;QD=3.12;ReadPosRankSum=1.372;SB=-2.402e+01 GT:AD:DP:GQ:PL 1/1:1,48:49:3:186,3,0 chrV 570041 . C T 139.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.058;DP=50;Dels=0.02;FS=30.523;HaplotypeScore=15.6948;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=1;MQRankSum=-1.625;QD=2.78;ReadPosRankSum=1.625;SB=-4.137e+00 GT:AD:DP:GQ:PL 1/1:2,47:49:1:168,1,0 chrV 570042 . G A 166.12 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.981;DP=51;Dels=0.02;FS=9.212;HaplotypeScore=16.6881;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=1;MQRankSum=0.104;QD=3.26;ReadPosRankSum=2.189;SB=-2.313e+01 GT:AD:DP:GQ:PL 1/1:3,47:50:5:197,5,0 chrV 570071 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;DP=67;Dels=0.00;FS=6.071;HaplotypeScore=4.6527;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=2;MQRankSum=2.254;QD=0.57;ReadPosRankSum=-2.275;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:60,7:67:68:68,0,374 chrV 570093 . A G 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=77;Dels=0.00;FS=27.463;HaplotypeScore=44.5440;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=2;MQRankSum=-2.635;QD=2.12;ReadPosRankSum=-0.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,39:77:99:193,0,465 chrV 570100 . A G 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DP=100;Dels=0.00;FS=28.810;HaplotypeScore=39.1959;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=6;MQRankSum=3.195;QD=0.76;ReadPosRankSum=1.427;SB=-4.200e+01 GT:AD:DP:GQ:PL 0/1:82,18:100:99:106,0,640 chrV 570114 . G A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;DP=116;Dels=0.00;FS=4.591;HaplotypeScore=52.8858;MLEAC=1;MLEAF=0.500;MQ=19.89;MQ0=7;MQRankSum=2.251;QD=0.52;ReadPosRankSum=3.151;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:104,12:116:90:90,0,777 chrV 570134 . T C 481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;DP=180;Dels=0.00;FS=72.345;HaplotypeScore=235.3133;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=13;MQRankSum=0.958;QD=2.67;ReadPosRankSum=3.094;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:104,74:180:99:511,0,466 chrV 570146 . T C 460.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;DP=194;Dels=0.00;FS=53.109;HaplotypeScore=211.6017;MLEAC=1;MLEAF=0.500;MQ=18.23;MQ0=13;MQRankSum=0.686;QD=2.37;ReadPosRankSum=2.842;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:116,75:194:99:490,0,729 chrV 570147 . G A 720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.518;DP=197;Dels=0.02;FS=58.008;HaplotypeScore=242.8546;MLEAC=1;MLEAF=0.500;MQ=18.27;MQ0=13;MQRankSum=1.382;QD=3.65;ReadPosRankSum=0.692;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:86,100:193:99:750,0,494 chrV 570157 . G A 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.137;DP=194;Dels=0.00;FS=1.629;HaplotypeScore=117.5765;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=13;MQRankSum=-2.180;QD=0.59;ReadPosRankSum=2.563;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:151,41:194:99:144,0,1121 chrV 570168 . T A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;DP=207;Dels=0.00;FS=1.572;HaplotypeScore=38.2777;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=15;MQRankSum=-3.946;QD=0.09;ReadPosRankSum=3.028;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:168,39:207:48:48,0,1625 chrV 570209 . G T 984.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;DP=212;Dels=0.04;FS=4.362;HaplotypeScore=234.8547;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=13;MQRankSum=-2.132;QD=4.64;ReadPosRankSum=0.969;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:78,121:203:99:1014,0,761 chrV 570212 . G A 301.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.014;DP=209;Dels=0.00;FS=5.098;HaplotypeScore=177.1851;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=14;MQRankSum=3.703;QD=1.44;ReadPosRankSum=3.465;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:153,56:209:99:331,0,1457 chrV 570219 . G T 145.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;DP=185;Dels=0.00;FS=5.117;HaplotypeScore=271.4636;MLEAC=1;MLEAF=0.500;MQ=24.67;MQ0=9;MQRankSum=1.808;QD=0.78;ReadPosRankSum=-0.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,36:185:99:175,0,980 chrV 570220 . A G 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;DP=184;Dels=0.00;FS=11.170;HaplotypeScore=198.7145;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=9;MQRankSum=1.832;QD=0.50;ReadPosRankSum=0.173;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,33:184:99:122,0,1454 chrV 570226 . G C 360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;DP=179;Dels=0.00;FS=30.211;HaplotypeScore=212.1562;MLEAC=1;MLEAF=0.500;MQ=25.51;MQ0=8;MQRankSum=2.684;QD=2.01;ReadPosRankSum=-1.518;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:124,52:179:99:390,0,1136 chrV 570235 . G A 579.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.443;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=152.6373;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=7;MQRankSum=2.825;QD=3.57;ReadPosRankSum=0.992;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:83,79:162:99:609,0,334 chrV 570270 . A G 502.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;DP=115;Dels=0.00;FS=3.865;HaplotypeScore=88.8700;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=1;MQRankSum=-0.312;QD=4.37;ReadPosRankSum=3.584;SB=-6.515e-03 GT:AD:DP:GQ:PL 0/1:32,74:115:98:532,0,98 chrV 570271 . C G 653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=108;Dels=0.01;FS=2.819;HaplotypeScore=86.2700;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=1;MQRankSum=1.196;QD=6.05;ReadPosRankSum=-0.483;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:4,87:107:81:686,81,0 chrV 570273 . G A 51.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DP=107;Dels=0.00;FS=14.436;HaplotypeScore=65.5141;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=0;MQRankSum=0.986;QD=0.48;ReadPosRankSum=0.881;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:93,14:107:54:81,0,54 chrV 570295 . T G 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;DP=86;Dels=0.00;FS=6.549;HaplotypeScore=104.1489;MLEAC=1;MLEAF=0.500;MQ=22.04;MQ0=0;MQRankSum=-2.962;QD=0.59;ReadPosRankSum=2.872;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,42:86:81:81,0,255 chrV 570299 . G A 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.871;DP=90;Dels=0.00;FS=57.315;HaplotypeScore=109.8085;MLEAC=1;MLEAF=0.500;MQ=21.45;MQ0=0;MQRankSum=5.692;QD=1.62;ReadPosRankSum=-0.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,22:90:99:176,0,124 chrV 570309 . C T 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=73;Dels=0.00;FS=33.223;HaplotypeScore=87.8001;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=0;MQRankSum=-3.464;QD=1.07;ReadPosRankSum=-0.816;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,57:73:99:108,0,170 chrV 570310 . G C 310 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DP=73;Dels=0.00;FS=10.305;HaplotypeScore=99.0961;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=0;MQRankSum=2.200;QD=4.25;ReadPosRankSum=0.353;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:11,52:73:39:343,39,0 chrV 570317 . A G 189.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=90.6333;MLEAC=1;MLEAF=0.500;MQ=19.44;MQ0=0;MQRankSum=-0.752;QD=2.63;ReadPosRankSum=2.427;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:22,50:72:58:219,0,58 chrV 570323 . G C 114.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DP=66;Dels=0.00;FS=38.465;HaplotypeScore=46.7517;MLEAC=1;MLEAF=0.500;MQ=19.13;MQ0=0;MQRankSum=3.621;QD=1.73;ReadPosRankSum=2.584;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,10:66:88:144,0,88 chrV 570325 . A G 272 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.252;DP=53;Dels=0.00;FS=2.144;HaplotypeScore=31.4934;MLEAC=2;MLEAF=1.00;MQ=19.97;MQ0=0;MQRankSum=0.558;QD=5.13;ReadPosRankSum=0.443;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:3,50:53:36:305,36,0 chrV 570440 . C G 2584 filter AC=2;AF=1.00;AN=2;DP=304;Dels=0.00;FS=0.000;HaplotypeScore=13.6753;MLEAC=2;MLEAF=1.00;MQ=13.44;MQ0=100;QD=8.50;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,300:304:99:2617,338,0 chrV 570667 . T G 222 filter AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.77;MQ0=114;QD=1.49;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:8,139:149:33:255,33,0 chrVI 899 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVI 986 . C T 3168 filter AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=32;QD=17.70;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,178:179:99:3201,366,0 chrVI 990 . T C 3045 filter AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.8542;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=41;QD=16.20;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:3,185:188:99:3078,363,0 chrVI 4669 . C A 296 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=19.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:329,39,0 chrVI 4670 . A G 287 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=19.13;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:320,39,0 chrVI 4679 . T G 289 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=19.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:322,39,0 chrVI 4787 . C A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=7.6443;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=4;MQRankSum=-0.551;QD=1.76;ReadPosRankSum=0.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,7:21:67:67,0,156 chrVI 4861 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=3.63;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:53,6,0 chrVI 4871 . C G 11.44 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.8530;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=-0.421;QD=1.14;ReadPosRankSum=0.421;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:4,4:10:13:41,0,13 chrVI 4892 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=6.6578;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=2.28;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,17:18:9:73,9,0 chrVI 4897 . C T 66.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.845;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=8.6179;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;MQRankSum=-0.264;QD=3.70;ReadPosRankSum=0.685;SB=2.49 GT:AD:DP:GQ:PL 1/1:5,12:18:12:99,12,0 chrVI 5188 . T C 31.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;DP=28;Dels=0.00;FS=7.324;HaplotypeScore=35.1628;MLEAC=1;MLEAF=0.500;MQ=23.79;MQ0=1;MQRankSum=-1.404;QD=1.11;ReadPosRankSum=0.343;SB=-7.454e-02 GT:AD:DP:GQ:PL 0/1:6,22:28:15:61,0,15 chrVI 5207 . T C 68.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.624;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=20.9977;MLEAC=2;MLEAF=1.00;MQ=23.29;MQ0=1;MQRankSum=-1.456;QD=2.64;ReadPosRankSum=1.456;SB=-2.248e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:12:101,12,0 chrVI 5240 . C T 25.33 LowQual;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=0;QD=0.90;SB=17.94 GT:AD:DP:GQ:PL 1/1:0,9:28:6:56,6,0 chrVI 5243 . G C 43.97 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;QD=1.63;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:9:76,9,0 chrVI 5257 . C T 49.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=0;QD=1.92;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:82,9,0 chrVI 5447 . G A 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;DP=42;Dels=0.00;FS=21.021;HaplotypeScore=9.6668;MLEAC=1;MLEAF=0.500;MQ=15.70;MQ0=19;MQRankSum=2.961;QD=1.24;ReadPosRankSum=-1.338;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:38,4:42:32:82,0,32 chrVI 5448 . C T 145.77 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;DP=45;Dels=0.00;FS=16.561;HaplotypeScore=12.5870;MLEAC=1;MLEAF=0.500;MQ=15.79;MQ0=19;MQRankSum=-1.883;QD=3.24;ReadPosRankSum=-0.178;SB=-1.068e+02 GT:AD:DP:GQ:PL 0/1:10,35:45:0:174,0,0 chrVI 5457 . C T 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DP=59;Dels=0.00;FS=13.424;HaplotypeScore=15.7445;MLEAC=1;MLEAF=0.500;MQ=17.42;MQ0=23;MQRankSum=-0.549;QD=0.51;ReadPosRankSum=-2.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,7:59:60:60,0,227 chrVI 5459 . A G 304.08 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.262;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=12.6988;MLEAC=2;MLEAF=1.00;MQ=17.21;MQ0=24;MQRankSum=0.981;QD=4.90;ReadPosRankSum=-1.661;SB=-1.481e+02 GT:AD:DP:GQ:PL 1/1:25,37:62:20:337,20,0 chrVI 5467 . A G 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=74;Dels=0.00;FS=9.428;HaplotypeScore=17.4621;MLEAC=1;MLEAF=0.500;MQ=18.59;MQ0=25;MQRankSum=3.068;QD=1.82;ReadPosRankSum=-0.510;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:61,13:74:99:165,0,273 chrVI 5482 . T A 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=14.1202;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=27;MQRankSum=-0.670;QD=3.25;ReadPosRankSum=-0.995;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:55,36:91:99:326,0,174 chrVI 5503 . C T 810.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;DP=141;Dels=0.00;FS=0.759;HaplotypeScore=104.1275;MLEAC=1;MLEAF=0.500;MQ=20.17;MQ0=24;MQRankSum=0.399;QD=5.74;ReadPosRankSum=-1.031;SB=-4.630e+02 GT:AD:DP:GQ:PL 0/1:57,84:141:99:840,0,270 chrVI 5553 . A G 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;DP=97;Dels=0.00;FS=1.126;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=20.84;MQ0=5;MQRankSum=-2.239;QD=1.14;ReadPosRankSum=-0.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,23:97:99:141,0,882 chrVI 5554 . G C,T 1106.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2938;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.79;MQ0=5;QD=11.64;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/2:0,23,72:95:99:1166,901,862,265,0,136 chrVI 5569 . T A 736.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;DP=78;Dels=0.00;FS=6.599;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=20.13;MQ0=3;MQRankSum=0.859;QD=9.44;ReadPosRankSum=2.028;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:20,58:78:99:766,0,150 chrVI 5581 . C T 818 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.59;MQ0=3;QD=14.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:851,110,0 chrVI 5587 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.33;MQ0=3;MQRankSum=0.952;QD=0.50;ReadPosRankSum=-1.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,6:48:54:54,0,417 chrVI 5598 . T G 213 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=2;MQRankSum=-0.764;QD=7.61;ReadPosRankSum=0.821;SB=3.33 GT:AD:DP:GQ:PL 1/1:9,19:28:33:246,33,0 chrVI 5604 . C T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=2;MQRankSum=-0.456;QD=1.26;ReadPosRankSum=0.304;SB=-6.547e-03 GT:AD:DP:GQ:PL 0/1:14,9:23:49:59,0,49 chrVI 5605 . C A 137.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=2;QD=6.53;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:170,21,0 chrVI 5625 . T C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=1;MQRankSum=0.255;QD=1.43;ReadPosRankSum=1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,12:30:73:73,0,121 chrVI 5628 . T C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=1;MQRankSum=0.697;QD=1.43;ReadPosRankSum=1.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,11:30:73:73,0,121 chrVI 5631 . A G 109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=1;MQRankSum=-0.335;QD=3.52;ReadPosRankSum=-0.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,17:31:75:139,0,75 chrVI 5642 . G A 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.8734;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=1;MQRankSum=0.384;QD=1.45;ReadPosRankSum=1.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,13:33:78:78,0,140 chrVI 5644 . C T 265 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=6.8734;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=1;QD=8.28;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:36:298,36,0 chrVI 5645 . G A 238 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=6.8734;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=1;QD=7.44;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:33:271,33,0 chrVI 5650 . T C 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.7634;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=1;MQRankSum=1.299;QD=2.06;ReadPosRankSum=0.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,8:36:99:104,0,125 chrVI 5659 . C A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.880;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=14.7299;MLEAC=1;MLEAF=0.500;MQ=20.06;MQ0=1;MQRankSum=2.634;QD=1.81;ReadPosRankSum=1.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,7:41:99:104,0,151 chrVI 5667 . T C 306 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=14.7266;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=1;QD=7.46;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:42:339,42,0 chrVI 5670 . T C 137.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.8366;MLEAC=1;MLEAF=0.500;MQ=19.56;MQ0=1;MQRankSum=1.384;QD=3.19;ReadPosRankSum=1.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,22:43:86:167,0,86 chrVI 5673 . T C 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;DP=47;Dels=0.00;FS=6.320;HaplotypeScore=8.6253;MLEAC=1;MLEAF=0.500;MQ=20.04;MQ0=2;MQRankSum=-2.009;QD=1.68;ReadPosRankSum=-1.260;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:23,24:47:99:109,0,173 chrVI 5682 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;DP=46;Dels=0.00;FS=8.772;HaplotypeScore=6.5336;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=2;MQRankSum=1.134;QD=2.11;ReadPosRankSum=1.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,18:46:74:127,0,74 chrVI 5688 . G T 297 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.5070;MLEAC=2;MLEAF=1.00;MQ=21.08;MQ0=2;QD=6.60;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:39:330,39,0 chrVI 5764 . C T 376.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=57;Dels=0.00;FS=21.203;HaplotypeScore=7.3528;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=9;MQRankSum=2.881;QD=6.60;ReadPosRankSum=1.604;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:13,43:57:27:409,27,0 chrVI 5786 . G A 445 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=67;Dels=0.00;FS=15.798;HaplotypeScore=6.5832;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=9;MQRankSum=-0.297;QD=6.64;ReadPosRankSum=-0.109;SB=-1.301e+01 GT:AD:DP:GQ:PL 1/1:5,61:67:38:478,38,0 chrVI 5801 . A G 299.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.270;DP=63;Dels=0.00;FS=43.953;HaplotypeScore=6.5915;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=10;MQRankSum=2.962;QD=4.75;ReadPosRankSum=-1.951;SB=-9.907e+01 GT:AD:DP:GQ:PL 1/1:16,47:63:21:332,21,0 chrVI 5830 . T G 398.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=77;Dels=0.00;FS=34.680;HaplotypeScore=30.9012;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=10;MQRankSum=3.142;QD=5.17;ReadPosRankSum=1.576;SB=-2.213e+02 GT:AD:DP:GQ:PL 1/1:17,60:77:15:431,15,0 chrVI 5849 . A G,T 530.22 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.648;DP=90;Dels=0.00;FS=14.771;HaplotypeScore=8.1167;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.58;MQ0=8;MQRankSum=-0.084;QD=5.89;ReadPosRankSum=1.690;SB=-6.692e+02 GT:AD:DP:GQ:PL 1/2:1,60,29:90:40:590,108,40,482,0,467 chrVI 5855 . G C 357.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;DP=93;Dels=0.00;FS=144.584;HaplotypeScore=49.6408;MLEAC=1;MLEAF=0.500;MQ=24.56;MQ0=2;MQRankSum=-1.615;QD=3.84;ReadPosRankSum=1.161;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,41:93:99:387,0,200 chrVI 5862 . G T 700 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=36.6615;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;MQRankSum=1.187;QD=7.87;ReadPosRankSum=1.421;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:90:733,90,0 chrVI 5865 . T G 624 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=37.5773;MLEAC=2;MLEAF=1.00;MQ=24.73;MQ0=0;QD=7.17;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:87:84:657,84,0 chrVI 5866 . T C 376.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;DP=89;Dels=0.00;FS=115.872;HaplotypeScore=38.5438;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=0;MQRankSum=-2.270;QD=4.22;ReadPosRankSum=1.548;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,46:89:99:406,0,156 chrVI 5879 . T C 610 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7099;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=1;QD=6.93;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:88:81:643,81,0 chrVI 5905 . T C 311.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;DP=87;Dels=0.00;FS=7.075;HaplotypeScore=77.9069;MLEAC=1;MLEAF=0.500;MQ=22.30;MQ0=1;MQRankSum=0.704;QD=3.57;ReadPosRankSum=2.805;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:21,66:87:50:341,0,50 chrVI 5961 . C T 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.720;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=64.2925;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=13;MQRankSum=-0.543;QD=3.72;ReadPosRankSum=0.266;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:28,57:86:99:350,0,283 chrVI 5967 . G A 239.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;DP=88;Dels=0.00;FS=36.978;HaplotypeScore=31.2528;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=13;MQRankSum=-0.231;QD=2.72;ReadPosRankSum=-0.802;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:49,39:88:99:269,0,386 chrVI 5982 . T C 1190 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=122;Dels=0.00;FS=8.839;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=14;MQRankSum=0.024;QD=9.75;ReadPosRankSum=3.376;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:4,118:122:99:1223,153,0 chrVI 6002 . C T 688.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.597;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=13;MQRankSum=0.102;QD=5.46;ReadPosRankSum=0.770;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:69,55:126:99:718,0,554 chrVI 6018 . T C 720.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;DP=132;Dels=0.00;FS=5.337;HaplotypeScore=26.9106;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=4;MQRankSum=-0.565;QD=5.45;ReadPosRankSum=1.732;SB=-4.100e+02 GT:AD:DP:GQ:PL 0/1:64,68:132:99:750,0,673 chrVI 6033 . T A 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DP=115;Dels=0.00;FS=4.173;HaplotypeScore=37.7456;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=3;MQRankSum=-1.519;QD=1.87;ReadPosRankSum=0.633;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:65,32:115:99:245,0,903 chrVI 6141 . G T 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.194;DP=67;Dels=0.00;FS=11.923;HaplotypeScore=4.4030;MLEAC=1;MLEAF=0.500;MQ=29.71;MQ0=0;MQRankSum=-1.579;QD=2.39;ReadPosRankSum=-2.622;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:48,19:67:99:190,0,705 chrVI 6180 . G T 175.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.932;DP=63;Dels=0.00;FS=6.660;HaplotypeScore=11.0197;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=0;MQRankSum=-1.912;QD=2.78;ReadPosRankSum=3.678;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:46,17:63:99:205,0,579 chrVI 6181 . T C 170.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=64;Dels=0.00;FS=4.512;HaplotypeScore=9.8434;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=-1.990;QD=2.66;ReadPosRankSum=3.523;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:47,17:64:99:200,0,530 chrVI 6182 . A G 172.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;DP=65;Dels=0.00;FS=8.752;HaplotypeScore=9.8434;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=-2.382;QD=2.65;ReadPosRankSum=2.949;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:46,18:65:99:202,0,527 chrVI 6232 . C T 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.675;DP=40;Dels=0.00;FS=1.614;HaplotypeScore=6.6789;MLEAC=1;MLEAF=0.500;MQ=19.81;MQ0=3;MQRankSum=-0.387;QD=1.78;ReadPosRankSum=1.273;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:31,9:40:99:101,0,209 chrVI 6233 . T G 52.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;DP=41;Dels=0.00;FS=4.257;HaplotypeScore=6.6789;MLEAC=1;MLEAF=0.500;MQ=20.40;MQ0=3;MQRankSum=-0.443;QD=1.27;ReadPosRankSum=1.050;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:30,7:41:82:82,0,211 chrVI 6248 . T C 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=44;Dels=0.00;FS=13.496;HaplotypeScore=11.9153;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=8;MQRankSum=-2.466;QD=4.25;ReadPosRankSum=2.761;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:14,28:44:99:217,0,120 chrVI 6249 . A T 128.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;DP=42;Dels=0.00;FS=8.559;HaplotypeScore=10.3379;MLEAC=1;MLEAF=0.500;MQ=19.85;MQ0=8;MQRankSum=-1.861;QD=3.05;ReadPosRankSum=2.155;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:18,24:42:99:158,0,182 chrVI 6258 . G T 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.388;DP=56;Dels=0.00;FS=26.602;HaplotypeScore=16.4061;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=9;MQRankSum=-2.265;QD=1.23;ReadPosRankSum=2.528;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:35,21:56:99:99,0,276 chrVI 6270 . G A 122.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=26.6818;MLEAC=1;MLEAF=0.500;MQ=20.85;MQ0=12;MQRankSum=3.513;QD=1.72;ReadPosRankSum=1.177;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:58,13:71:99:152,0,362 chrVI 6272 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.396;DP=73;Dels=0.00;FS=17.815;HaplotypeScore=25.2241;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=13;MQRankSum=-1.690;QD=0.17;ReadPosRankSum=1.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,21:73:42:42,0,463 chrVI 6276 . C T 160.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=76;Dels=0.00;FS=6.962;HaplotypeScore=26.0128;MLEAC=1;MLEAF=0.500;MQ=20.55;MQ0=14;MQRankSum=3.898;QD=2.11;ReadPosRankSum=0.513;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:59,17:76:99:190,0,254 chrVI 6294 . A G 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DP=79;Dels=0.00;FS=2.395;HaplotypeScore=21.4636;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=16;MQRankSum=-0.115;QD=1.34;ReadPosRankSum=-2.956;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:50,29:79:99:136,0,322 chrVI 6351 . A G 1351 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.4980;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=6;MQRankSum=-0.022;QD=13.79;ReadPosRankSum=2.922;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:3,93:98:99:1384,162,0 chrVI 6354 . C A 1278 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=5;QD=13.18;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1311,150,0 chrVI 6417 . T C 657 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=1;QD=7.47;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:84:690,84,0 chrVI 6419 . A G 146.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DP=87;Dels=0.00;FS=196.806;HaplotypeScore=4.3425;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=1;MQRankSum=1.134;QD=1.68;ReadPosRankSum=1.134;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,51:87:99:176,0,375 chrVI 6434 . A C,G 416.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.91;MQ0=0;QD=5.01;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/2:0,59,24:83:99:476,193,154,283,0,259 chrVI 6441 . C A 246.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DP=79;Dels=0.00;FS=136.981;HaplotypeScore=5.4709;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=0;MQRankSum=0.885;QD=3.11;ReadPosRankSum=0.998;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:20,59:79:99:276,0,173 chrVI 6444 . A G 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.988;DP=69;Dels=0.00;FS=130.367;HaplotypeScore=4.6823;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=-0.284;QD=2.68;ReadPosRankSum=3.221;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:20,49:69:99:215,0,189 chrVI 6446 . A G 188.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.927;DP=69;Dels=0.00;FS=130.367;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=1.607;QD=2.72;ReadPosRankSum=3.789;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:20,49:69:99:218,0,190 chrVI 6447 . A G 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.120;DP=69;Dels=0.00;FS=130.367;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=0.747;QD=2.80;ReadPosRankSum=4.054;SB=-2.702e+01 GT:AD:DP:GQ:PL 0/1:20,49:69:99:223,0,190 chrVI 6455 . A G 349 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8936;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=4.92;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:45:382,45,0 chrVI 6458 . T C 199.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=70;Dels=0.00;FS=102.206;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=1.461;QD=2.84;ReadPosRankSum=3.208;SB=-7.502e+01 GT:AD:DP:GQ:PL 0/1:14,56:70:59:229,0,59 chrVI 6471 . T C 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;DP=52;Dels=0.00;FS=96.567;HaplotypeScore=12.9255;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=4.124;QD=1.19;ReadPosRankSum=0.196;SB=-3.024e+00 GT:AD:DP:GQ:PL 0/1:16,36:52:25:92,0,25 chrVI 6473 . T C 60.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;DP=50;Dels=0.02;FS=41.800;HaplotypeScore=24.3025;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=0;MQRankSum=2.486;QD=1.20;ReadPosRankSum=-2.394;SB=-3.024e+00 GT:AD:DP:GQ:PL 0/1:6,43:49:25:90,0,25 chrVI 6491 . T C 95.52 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=1;MQRankSum=1.377;QD=2.27;ReadPosRankSum=1.977;SB=-1.375e+02 GT:AD:DP:GQ:PL 0/1:4,38:42:6:125,0,6 chrVI 6499 . T C 139.06 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=2;QD=3.23;SB=-1.561e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:21:172,21,0 chrVI 6500 . T C 53.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;DP=44;Dels=0.00;FS=80.825;HaplotypeScore=4.3155;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=2;MQRankSum=5.096;QD=1.20;ReadPosRankSum=1.131;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,24:44:49:83,0,49 chrVI 6509 . T C 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770;DP=46;Dels=0.00;FS=87.796;HaplotypeScore=9.1390;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=2;MQRankSum=5.127;QD=1.04;ReadPosRankSum=0.766;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,24:46:73:78,0,73 chrVI 6516 . C G 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;DP=49;Dels=0.00;FS=25.729;HaplotypeScore=12.4853;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=7;MQRankSum=4.229;QD=1.88;ReadPosRankSum=-0.840;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:21,28:49:54:122,0,54 chrVI 6518 . T C 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;DP=49;Dels=0.00;FS=75.361;HaplotypeScore=15.4344;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=7;MQRankSum=4.848;QD=1.10;ReadPosRankSum=-0.214;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:27,22:49:82:84,0,82 chrVI 6522 . A C 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;DP=50;Dels=0.00;FS=73.279;HaplotypeScore=21.2929;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=9;MQRankSum=4.473;QD=0.44;ReadPosRankSum=-0.143;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:30,20:50:52:52,0,102 chrVI 6526 . G A 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;DP=45;Dels=0.00;FS=21.733;HaplotypeScore=24.4160;MLEAC=1;MLEAF=0.500;MQ=19.42;MQ0=10;MQRankSum=4.354;QD=1.02;ReadPosRankSum=0.248;SB=-9.195e+01 GT:AD:DP:GQ:PL 0/1:26,19:45:76:76,0,76 chrVI 6528 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.296;DP=47;Dels=0.00;FS=21.733;HaplotypeScore=19.5358;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=11;MQRankSum=3.898;QD=0.94;ReadPosRankSum=0.475;SB=-8.988e+01 GT:AD:DP:GQ:PL 0/1:28,19:47:74:74,0,82 chrVI 6529 . G A 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.267;DP=47;Dels=0.00;FS=57.926;HaplotypeScore=19.5358;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=11;MQRankSum=3.975;QD=0.64;ReadPosRankSum=0.990;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:33,14:47:60:60,0,104 chrVI 6530 . C A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.813;DP=47;Dels=0.00;FS=57.926;HaplotypeScore=23.4392;MLEAC=1;MLEAF=0.500;MQ=19.03;MQ0=11;MQRankSum=4.494;QD=0.62;ReadPosRankSum=0.860;SB=-2.909e+00 GT:AD:DP:GQ:PL 0/1:33,14:47:59:59,0,99 chrVI 6533 . T G 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=49;Dels=0.00;FS=25.601;HaplotypeScore=26.3754;MLEAC=1;MLEAF=0.500;MQ=19.53;MQ0=11;MQRankSum=4.492;QD=0.96;ReadPosRankSum=-0.499;SB=-9.193e+01 GT:AD:DP:GQ:PL 0/1:28,21:49:77:77,0,80 chrVI 6548 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;DP=54;Dels=0.00;FS=56.410;HaplotypeScore=19.3272;MLEAC=1;MLEAF=0.500;MQ=17.87;MQ0=16;MQRankSum=4.098;QD=0.50;ReadPosRankSum=-0.047;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:42,12:54:57:57,0,129 chrVI 6554 . T G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.517;DP=53;Dels=0.00;FS=18.706;HaplotypeScore=8.5759;MLEAC=1;MLEAF=0.500;MQ=16.67;MQ0=18;MQRankSum=3.657;QD=0.75;ReadPosRankSum=0.612;SB=-6.274e+01 GT:AD:DP:GQ:PL 0/1:39,14:53:70:70,0,123 chrVI 6556 . A C 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;DP=52;Dels=0.00;FS=18.706;HaplotypeScore=9.4699;MLEAC=1;MLEAF=0.500;MQ=16.83;MQ0=18;MQRankSum=3.377;QD=0.79;ReadPosRankSum=0.262;SB=-6.482e+01 GT:AD:DP:GQ:PL 0/1:37,14:52:71:71,0,103 chrVI 6563 . C T 236.33 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=53;Dels=0.00;FS=9.259;HaplotypeScore=11.8180;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=18;MQRankSum=0.337;QD=4.46;ReadPosRankSum=-1.322;SB=-1.263e+02 GT:AD:DP:GQ:PL 1/1:4,49:53:14:269,14,0 chrVI 6568 . C T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;DP=51;Dels=0.00;FS=37.911;HaplotypeScore=5.5764;MLEAC=1;MLEAF=0.500;MQ=16.96;MQ0=17;MQRankSum=-2.451;QD=0.34;ReadPosRankSum=1.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,13:51:47:47,0,167 chrVI 6617 . G A 175.19 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.319;DP=31;Dels=0.00;FS=3.278;HaplotypeScore=4.7877;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=9;MQRankSum=0.213;QD=5.65;ReadPosRankSum=1.575;SB=-3.340e+01 GT:AD:DP:GQ:PL 1/1:4,27:31:8:207,8,0 chrVI 6642 . C T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=24;Dels=0.00;FS=3.854;HaplotypeScore=7.4252;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=6;MQRankSum=1.220;QD=2.21;ReadPosRankSum=-0.830;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:15,8:24:83:83,0,99 chrVI 6713 . A G 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.1690;MLEAC=1;MLEAF=0.500;MQ=20.13;MQ0=8;MQRankSum=-0.197;QD=2.70;ReadPosRankSum=-1.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,11:30:99:111,0,121 chrVI 6716 . T C 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.9843;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=8;MQRankSum=-0.202;QD=3.91;ReadPosRankSum=-1.703;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,12:32:83:155,0,83 chrVI 6719 . C T 162.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;DP=38;Dels=0.00;FS=8.870;HaplotypeScore=4.9843;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=8;MQRankSum=0.614;QD=4.26;ReadPosRankSum=-1.630;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:20,18:38:65:192,0,65 chrVI 6847 . T C 90.26 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=6;QD=4.10;SB=-6.930e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:15:123,15,0 chrVI 6954 . A G 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;DP=50;Dels=0.00;FS=6.154;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=10.80;MQ0=39;MQRankSum=-0.143;QD=0.92;ReadPosRankSum=0.466;SB=-1.294e+01 GT:AD:DP:GQ:PL 0/1:29,21:50:76:76,0,77 chrVI 6957 . G A 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;DP=47;Dels=0.00;FS=6.154;HaplotypeScore=1.7287;MLEAC=1;MLEAF=0.500;MQ=11.14;MQ0=36;MQRankSum=0.466;QD=1.13;ReadPosRankSum=0.466;SB=-1.594e+01 GT:AD:DP:GQ:PL 0/1:20,27:47:79:83,0,79 chrVI 7000 . G C 71.51 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.90;MQ0=13;QD=3.11;SB=-5.055e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:104,12,0 chrVI 7032 . T A 83.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=7;MQRankSum=-1.156;QD=3.33;ReadPosRankSum=0.385;SB=-2.681e+01 GT:AD:DP:GQ:PL 0/1:6,19:25:10:113,0,10 chrVI 7037 . G A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=7;MQRankSum=-1.529;QD=2.50;ReadPosRankSum=0.283;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:11,13:24:57:90,0,57 chrVI 7089 . T C 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;DP=32;Dels=0.00;FS=17.799;HaplotypeScore=1.9913;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=7;MQRankSum=-0.334;QD=7.06;ReadPosRankSum=2.038;SB=-3.902e+01 GT:AD:DP:GQ:PL 0/1:11,21:32:33:256,0,33 chrVI 7091 . C T 287.64 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DP=32;Dels=0.00;FS=12.825;HaplotypeScore=1.9913;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=7;MQRankSum=0.209;QD=8.99;ReadPosRankSum=2.383;SB=-4.465e+01 GT:AD:DP:GQ:PL 0/1:10,22:32:5:317,0,5 chrVI 7094 . A G 232.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DP=32;Dels=0.00;FS=17.799;HaplotypeScore=1.9913;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=7;MQRankSum=0.259;QD=7.25;ReadPosRankSum=2.928;SB=-4.102e+01 GT:AD:DP:GQ:PL 0/1:11,21:32:37:262,0,37 chrVI 7096 . T C 212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DP=32;Dels=0.00;FS=17.799;HaplotypeScore=1.9913;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=7;MQRankSum=0.482;QD=6.63;ReadPosRankSum=2.928;SB=-3.202e+01 GT:AD:DP:GQ:PL 0/1:11,21:32:36:242,0,36 chrVI 7097 . T A 255.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;DP=32;Dels=0.00;FS=17.799;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=23.66;MQ0=7;MQRankSum=0.408;QD=7.97;ReadPosRankSum=2.928;SB=-4.402e+01 GT:AD:DP:GQ:PL 0/1:11,21:32:32:285,0,32 chrVI 7101 . C T 248.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;DP=33;Dels=0.00;FS=19.221;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=6;MQRankSum=-0.171;QD=7.52;ReadPosRankSum=2.559;SB=-4.102e+01 GT:AD:DP:GQ:PL 0/1:9,24:33:32:278,0,32 chrVI 7112 . T A 363 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=15.12;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:45:396,45,0 chrVI 7113 . T C 355 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=2;QD=14.20;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:45:388,45,0 chrVI 7116 . A G 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=4;QD=12.96;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:4,23:27:45:383,45,0 chrVI 7117 . A G 352 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=4;QD=13.04;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:4,23:27:45:385,45,0 chrVI 7126 . C T 350 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=5;MQRankSum=1.583;QD=12.50;ReadPosRankSum=1.583;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:6,22:28:42:383,42,0 chrVI 7129 . A C 304 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=5;MQRankSum=1.583;QD=10.86;ReadPosRankSum=1.432;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:6,22:28:39:337,39,0 chrVI 7304 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.025;DP=27;Dels=0.00;FS=13.919;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=12;MQRankSum=0.521;QD=2.11;ReadPosRankSum=-2.604;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:10,17:27:79:87,0,79 chrVI 7357 . G A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;DP=51;Dels=0.00;FS=15.608;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.38;MQ0=15;MQRankSum=-0.091;QD=1.37;ReadPosRankSum=-0.639;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:35,15:51:99:100,0,289 chrVI 7364 . G A 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;DP=55;Dels=0.00;FS=18.939;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=17;MQRankSum=0.665;QD=5.27;ReadPosRankSum=2.417;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:19,35:55:95:320,0,95 chrVI 7382 . G A 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=51;Dels=0.00;FS=18.597;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=21.23;MQ0=10;MQRankSum=-0.044;QD=1.31;ReadPosRankSum=-1.874;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:34,15:51:97:97,0,313 chrVI 7397 . G T 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=12;MQRankSum=-0.867;QD=4.67;ReadPosRankSum=1.752;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:10,37:51:49:268,0,49 chrVI 7415 . T C 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.4911;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=9;MQRankSum=1.753;QD=4.04;ReadPosRankSum=-0.456;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:29,20:49:99:228,0,184 chrVI 7418 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;DP=47;Dels=0.00;FS=1.433;HaplotypeScore=3.7024;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=8;MQRankSum=-1.944;QD=2.11;ReadPosRankSum=0.161;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:23,23:47:99:129,0,222 chrVI 7520 . T C 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=1;MLEAF=0.500;MQ=20.35;MQ0=24;MQRankSum=2.996;QD=2.30;ReadPosRankSum=-1.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,26:79:99:214,0,156 chrVI 7643 . G C 194.01 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.05;MQ0=12;QD=7.76;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:25:27:227,27,0 chrVI 7656 . C T 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DP=28;Dels=0.00;FS=15.315;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=22.38;MQ0=11;MQRankSum=0.529;QD=4.32;ReadPosRankSum=2.358;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:18,10:28:74:151,0,74 chrVI 7719 . A T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;DP=36;Dels=0.00;FS=1.960;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=4;MQRankSum=0.623;QD=0.42;ReadPosRankSum=1.868;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:27,9:36:45:45,0,340 chrVI 7834 . A G 858.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.611;DP=100;Dels=0.00;FS=43.454;HaplotypeScore=2.9879;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=7;MQRankSum=3.957;QD=8.58;ReadPosRankSum=-1.275;SB=-4.140e+02 GT:AD:DP:GQ:PL 0/1:32,68:100:99:888,0,215 chrVI 8003 . T C 312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.974;DP=45;Dels=0.00;FS=10.480;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=9;MQRankSum=1.251;QD=6.93;ReadPosRankSum=0.449;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:17,28:45:99:342,0,158 chrVI 8010 . C A 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;DP=45;Dels=0.00;FS=13.032;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=8;MQRankSum=1.191;QD=7.13;ReadPosRankSum=-0.170;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:17,28:45:99:351,0,160 chrVI 8038 . C T 179.03 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=8;QD=6.63;SB=-7.591e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:24:212,24,0 chrVI 8262 . G A 118.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.42;MQ0=20;QD=4.07;SB=-5.063e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:18:151,18,0 chrVI 8323 . C T 198.01 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=3;QD=9.90;SB=-8.002e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:27:231,27,0 chrVI 8360 . A C 176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;DP=35;Dels=0.00;FS=14.829;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.04;MQ0=1;MQRankSum=0.783;QD=5.03;ReadPosRankSum=0.856;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:20,15:35:99:206,0,133 chrVI 8532 . A G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DP=22;Dels=0.00;FS=3.332;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=11;MQRankSum=1.683;QD=3.05;ReadPosRankSum=0.248;SB=-5.404e+01 GT:AD:DP:GQ:PL 0/1:8,13:22:56:97,0,56 chrVI 8551 . C A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=30;Dels=0.00;FS=2.884;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=13;MQRankSum=-1.318;QD=2.77;ReadPosRankSum=0.896;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:13,17:30:53:113,0,53 chrVI 8569 . A C 272 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=13;QD=8.24;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:36:305,36,0 chrVI 8578 . T C 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=12;MQRankSum=-1.828;QD=3.42;ReadPosRankSum=2.275;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:13,20:33:76:143,0,76 chrVI 8661 . A G 197.01 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=10;QD=6.79;SB=-7.502e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:27:230,27,0 chrVI 8668 . A C 220 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=10;QD=6.67;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:1,31:33:30:253,30,0 chrVI 8753 . T C 532 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;DP=46;Dels=0.00;FS=4.890;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=9;MQRankSum=0.796;QD=11.57;ReadPosRankSum=1.639;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:69:565,69,0 chrVI 8776 . T C 340 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=10;QD=8.95;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:45:373,45,0 chrVI 8787 . T C 68.51 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.70;MQ0=8;QD=2.98;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:101,12,0 chrVI 8801 . A G 34.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.48;MQ0=8;MQRankSum=0.811;QD=1.62;ReadPosRankSum=1.200;SB=-4.104e+01 GT:AD:DP:GQ:PL 0/1:11,10:21:15:64,0,15 chrVI 8804 . G A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.62;MQ0=8;MQRankSum=0.896;QD=2.63;ReadPosRankSum=0.896;SB=-4.521e+01 GT:AD:DP:GQ:PL 1/1:9,10:19:9:82,9,0 chrVI 8893 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.11;MQ0=18;QD=1.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,22:23:6:55,6,0 chrVI 8910 . C A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;DP=32;Dels=0.00;FS=2.817;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.37;MQ0=20;MQRankSum=0.380;QD=1.88;ReadPosRankSum=1.461;SB=-3.896e+01 GT:AD:DP:GQ:PL 0/1:19,13:32:59:90,0,59 chrVI 9106 . T G 147.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.37;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:180,21,0 chrVI 9223 . A G 13.26 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=3;MQRankSum=0.727;QD=1.89;ReadPosRankSum=-0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:1,6:7:17:43,0,17 chrVI 9225 . T C 92.26 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=2;QD=11.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:8:15:125,15,0 chrVI 9268 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=17.14;MQ0=25;MQRankSum=-0.048;QD=1.10;ReadPosRankSum=-0.529;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,17:42:76:76,0,100 chrVI 9286 . G A 111.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.039;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=29;MQRankSum=-0.456;QD=2.28;ReadPosRankSum=-0.532;SB=-7.949e-01 GT:AD:DP:GQ:PL 0/1:23,26:49:4:141,0,4 chrVI 10267 . T C 373 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=40;MQRankSum=-1.386;QD=5.33;ReadPosRankSum=1.617;SB=-6.622e-03 GT:AD:DP:GQ:PL 1/1:1,69:70:48:406,48,0 chrVI 10278 . C T 440 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=36;QD=6.11;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:54:473,54,0 chrVI 10430 . T G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=7.48;MQ0=71;MQRankSum=-0.322;QD=0.68;ReadPosRankSum=0.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,32:79:59:84,0,59 chrVI 10436 . A T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.63;MQ0=68;MQRankSum=0.322;QD=0.38;ReadPosRankSum=0.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,43:76:59:59,0,88 chrVI 10475 . C A 38.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.34;MQ0=69;MQRankSum=-0.731;QD=0.51;ReadPosRankSum=0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,36:74:15:68,0,15 chrVI 10580 . A G 287 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=47;QD=4.16;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:39:320,39,0 chrVI 10669 . A G 1275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.668;DP=125;Dels=0.00;FS=19.184;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=19;MQRankSum=5.063;QD=10.20;ReadPosRankSum=3.235;SB=-6.980e+02 GT:AD:DP:GQ:PL 0/1:44,81:125:99:1305,0,107 chrVI 10778 . G A 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DP=98;Dels=0.00;FS=2.682;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=11.57;MQ0=75;MQRankSum=-2.766;QD=0.63;ReadPosRankSum=-2.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,46:98:92:92,0,126 chrVI 10843 . C T 226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=93;Dels=0.00;FS=6.513;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=16.15;MQ0=47;MQRankSum=-2.980;QD=2.43;ReadPosRankSum=0.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,42:93:99:256,0,311 chrVI 10844 . C T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;DP=91;Dels=0.00;FS=6.971;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=15.87;MQ0=47;MQRankSum=-2.675;QD=2.54;ReadPosRankSum=0.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,41:91:99:261,0,256 chrVI 10940 . T C 817.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;DP=130;Dels=0.00;FS=16.043;HaplotypeScore=4.9328;MLEAC=1;MLEAF=0.500;MQ=19.92;MQ0=34;MQRankSum=-1.096;QD=6.28;ReadPosRankSum=0.784;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:54,75:130:99:847,0,463 chrVI 10977 . A G 462.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DP=100;Dels=0.00;FS=32.946;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=20.15;MQ0=31;MQRankSum=1.489;QD=4.62;ReadPosRankSum=-0.322;SB=-1.532e+02 GT:AD:DP:GQ:PL 0/1:49,51:100:99:492,0,405 chrVI 11006 . A G 537 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=23;QD=8.52;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:66:570,66,0 chrVI 11023 . G A 535 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=16;QD=8.36;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:66:568,66,0 chrVI 11034 . A G 445 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=14;QD=7.06;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:63:54:478,54,0 chrVI 11064 . A G 122.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=15.1868;MLEAC=2;MLEAF=1.00;MQ=21.11;MQ0=5;MQRankSum=-1.011;QD=4.21;ReadPosRankSum=1.589;SB=-8.012e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:18:155,18,0 chrVI 11107 . C T 47.19 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=14.29;MQ0=33;QD=1.00;SB=-3.906e+01 GT:AD:DP:GQ:PL 1/1:0,29:47:9:79,9,0 chrVI 11160 . T C 393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=38;MQRankSum=2.060;QD=3.64;ReadPosRankSum=-0.201;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:63,45:108:99:423,0,481 chrVI 11260 . T C 1377 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.351;DP=151;Dels=0.00;FS=16.626;HaplotypeScore=6.5343;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=5;MQRankSum=-3.303;QD=9.12;ReadPosRankSum=3.315;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:4,147:151:99:1410,165,0 chrVI 11277 . T C 1693 filter AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4010;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=4;QD=11.84;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:1726,201,0 chrVI 11305 . G T 2438 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=1;QD=13.54;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:2471,288,0 chrVI 11404 . A G 663 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.21;MQ0=64;QD=5.22;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:81:696,81,0 chrVI 11547 . G A 419 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.81;MQ0=37;QD=5.66;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,73:74:51:452,51,0 chrVI 11581 . T C 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;DP=104;Dels=0.00;FS=1.580;HaplotypeScore=4.8593;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=42;MQRankSum=0.393;QD=2.18;ReadPosRankSum=-0.274;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:54,47:104:99:257,0,275 chrVI 11630 . C T 3019 filter AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=28;QD=15.02;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,200:201:99:3052,342,0 chrVI 12049 . A G 1202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.618;DP=190;Dels=0.00;FS=2.725;HaplotypeScore=18.9160;MLEAC=1;MLEAF=0.500;MQ=37.01;MQ0=20;MQRankSum=1.356;QD=6.33;ReadPosRankSum=-0.399;SB=-6.040e+02 GT:AD:DP:GQ:PL 0/1:92,97:190:99:1232,0,1183 chrVI 12112 . C T 2401 filter AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=44;QD=16.01;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2434,270,0 chrVI 12139 . C T 1932 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=34;QD=15.21;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1965,219,0 chrVI 12364 . A T 276.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;DP=116;Dels=0.00;FS=5.291;HaplotypeScore=5.0573;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=58;MQRankSum=-0.033;QD=2.38;ReadPosRankSum=0.742;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:62,54:116:99:306,0,551 chrVI 12416 . T A 5163.01 filter AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=4.7270;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=16;QD=19.86;SB=-2.940e+03 GT:AD:DP:GQ:PL 1/1:0,260:260:99:5163,588,0 chrVI 12677 . A T 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=54;MQRankSum=-0.167;QD=2.10;ReadPosRankSum=0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,48:91:99:221,0,291 chrVI 12766 . A T 790.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;DP=216;Dels=0.00;FS=14.872;HaplotypeScore=8.1766;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=106;MQRankSum=-0.185;QD=3.66;ReadPosRankSum=1.379;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:113,103:216:99:820,0,751 chrVI 12867 . T C 32.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;DP=33;Dels=0.00;FS=16.767;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.39;MQ0=12;MQRankSum=1.209;QD=0.98;ReadPosRankSum=2.642;SB=-3.177e+00 GT:AD:DP:GQ:PL 0/1:6,25:33:11:62,0,11 chrVI 12888 . T A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;DP=48;Dels=0.00;FS=5.527;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=15.43;MQ0=22;MQRankSum=-0.284;QD=0.54;ReadPosRankSum=-1.493;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:35,13:48:56:56,0,109 chrVI 12915 . C G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=14.12;MQ0=55;MQRankSum=-2.329;QD=0.35;ReadPosRankSum=0.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,36:115:70:70,0,468 chrVI 13018 . C T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.358;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=12.26;MQ0=86;MQRankSum=-0.893;QD=0.37;ReadPosRankSum=0.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,56:166:92:92,0,345 chrVI 13324 . G A 1266.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.878;DP=397;Dels=0.00;FS=28.903;HaplotypeScore=12.7024;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=76;MQRankSum=3.509;QD=3.19;ReadPosRankSum=-1.551;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:270,126:397:99:1296,0,3352 chrVI 13396 . C T 1059 filter AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=9.7278;MLEAC=2;MLEAF=1.00;MQ=13.15;MQ0=141;QD=4.73;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,221:224:99:1092,132,0 chrVI 13483 . G A 681.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;DP=285;Dels=0.00;FS=1.857;HaplotypeScore=7.9737;MLEAC=1;MLEAF=0.500;MQ=17.33;MQ0=85;MQRankSum=0.563;QD=2.39;ReadPosRankSum=-0.022;SB=-4.320e+02 GT:AD:DP:GQ:PL 0/1:191,92:285:99:711,0,1712 chrVI 13690 . C T 422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DP=287;Dels=0.00;FS=191.773;HaplotypeScore=61.8915;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=46;MQRankSum=-3.822;QD=1.47;ReadPosRankSum=-1.392;SB=-6.347e-03 GT:AD:DP:GQ:PL 0/1:195,92:287:99:452,0,1867 chrVI 13696 . G A 390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.580;DP=284;Dels=0.00;FS=11.528;HaplotypeScore=63.7202;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=46;MQRankSum=-0.266;QD=1.37;ReadPosRankSum=-0.543;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,59:284:99:420,0,2135 chrVI 13771 . T G 767.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;DP=192;Dels=0.00;FS=135.392;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=16.32;MQ0=77;MQRankSum=4.525;QD=3.99;ReadPosRankSum=2.440;SB=-7.002e+01 GT:AD:DP:GQ:PL 0/1:111,80:192:99:797,0,545 chrVI 13997 . G T 923 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.35;MQ0=22;QD=10.14;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:956,108,0 chrVI 14141 . A G 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=43;Dels=0.00;FS=3.099;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=3;MQRankSum=0.605;QD=14.84;ReadPosRankSum=2.133;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:2,40:43:78:671,78,0 chrVI 14248 . A G 593 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=1;QD=16.94;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:626,75,0 chrVI 14343 . G A 745 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=11;QD=12.42;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:87:778,87,0 chrVI 14388 . T C 599 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=14;QD=10.70;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:632,72,0 chrVI 14512 . A G 540 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=4;QD=9.64;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:56:66:573,66,0 chrVI 14899 . C T 845 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=2;QD=12.25;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:878,102,0 chrVI 14901 . A G 780 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=2;QD=11.47;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:813,96,0 chrVI 14911 . C T 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=61.4606;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=2;MQRankSum=-1.559;QD=11.08;ReadPosRankSum=1.045;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:96:853,96,0 chrVI 14925 . T A 704.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=2;MQRankSum=3.004;QD=8.29;ReadPosRankSum=2.871;SB=-1.884e+02 GT:AD:DP:GQ:PL 1/1:7,78:85:13:737,13,0 chrVI 15115 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.72;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1236,138,0 chrVI 15234 . A G 217 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=7.48;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:30:250,30,0 chrVI 15240 . C T 270 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=9.64;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:303,33,0 chrVI 15242 . C G 249 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=8.89;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:282,33,0 chrVI 15243 . A G 251 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=8.96;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:284,33,0 chrVI 15255 . G A 127.13 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=7.95;SB=-1.621e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:18:160,18,0 chrVI 15258 . C T 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=8.66;SB=-1.111e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:128,15,0 chrVI 15260 . A G 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=7.93;SB=-1.001e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:120,15,0 chrVI 15271 . C T 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=11.09;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:99,12,0 chrVI 15273 . C T 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=12.25;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:106,12,0 chrVI 15276 . C T 43.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=0.736;QD=7.20;ReadPosRankSum=-0.736;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:1,5:6:10:73,0,10 chrVI 15280 . C T 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=18.38;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:12:106,12,0 chrVI 15281 . T C 37.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=0.727;QD=9.30;ReadPosRankSum=-0.727;SB=-2.611e+01 GT:AD:DP:GQ:PL 0/1:1,3:4:10:67,0,10 chrVI 15333 . A G 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.22;MQ0=0;QD=3.63;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:72,9,0 chrVI 15336 . G T 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=0;QD=1.20;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:48,6,0 chrVI 15339 . A T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=0;QD=1.72;SB=-2.951e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:57,6,0 chrVI 15342 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=2.82;SB=-2.985e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:80,9,0 chrVI 15351 . A T 43.11 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=0;MQRankSum=1.387;QD=1.49;ReadPosRankSum=1.561;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,19:29:9:75,9,0 chrVI 15360 . A T 62.06 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=34;Dels=0.00;FS=11.137;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=0;MQRankSum=3.228;QD=1.83;ReadPosRankSum=-2.010;SB=-2.079e+02 GT:AD:DP:GQ:PL 0/1:8,26:34:16:92,0,16 chrVI 15361 . C G 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=2.16;SB=-2.345e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:12:106,12,0 chrVI 15369 . A T 216.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.654;DP=44;Dels=0.00;FS=7.784;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=0;MQRankSum=3.028;QD=4.92;ReadPosRankSum=-1.263;SB=-2.605e+02 GT:AD:DP:GQ:PL 1/1:8,36:44:7:248,7,0 chrVI 15372 . A G 215.19 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;DP=46;Dels=0.00;FS=5.068;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=25.95;MQ0=0;MQRankSum=2.365;QD=4.68;ReadPosRankSum=-2.528;SB=-2.872e+02 GT:AD:DP:GQ:PL 1/1:6,40:46:8:247,8,0 chrVI 15375 . T C 470 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=12.796;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;MQRankSum=0.652;QD=8.55;ReadPosRankSum=2.360;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:57:503,57,0 chrVI 15378 . G A 490 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=8.31;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:60:523,60,0 chrVI 15393 . T G 587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-1.070;QD=8.63;ReadPosRankSum=1.121;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:72:620,72,0 chrVI 15398 . A G 628 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4808;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;QD=8.85;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:71:78:661,78,0 chrVI 15408 . A T 711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0084;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;MQRankSum=1.685;QD=9.61;ReadPosRankSum=1.685;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:84:744,84,0 chrVI 15487 . T G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.802;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.507;QD=18.40;ReadPosRankSum=4.519;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:9,93:103:99:1928,222,0 chrVI 15641 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.80;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:99:945,102,0 chrVI 15708 . T C 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.527;QD=19.79;ReadPosRankSum=1.582;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:99:963,114,0 chrVI 15819 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.48;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1981,216,0 chrVI 15971 . A T 988 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.33;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1021,114,0 chrVI 16019 . C T 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=60;Dels=0.00;FS=3.941;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.246;QD=14.40;ReadPosRankSum=-0.152;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:897,102,0 chrVI 16093 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1254,147,0 chrVI 16378 . T A 943 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.43;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:976,108,0 chrVI 16409 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.49;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:996,111,0 chrVI 16654 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.00;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1375,153,0 chrVI 16724 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7337;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.17;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1895,213,0 chrVI 16824 . A C 838 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.10;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:871,102,0 chrVI 16830 . T C 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.706;QD=17.57;ReadPosRankSum=1.668;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:982,114,0 chrVI 16896 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.43;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1259,141,0 chrVI 17210 . A C 2045 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.25;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2078,243,0 chrVI 17384 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.38;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1433,162,0 chrVI 17394 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.78;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1509,168,0 chrVI 17399 . A G 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=2.836;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.142;QD=15.69;ReadPosRankSum=2.323;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1257,150,0 chrVI 17653 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.18;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1452,165,0 chrVI 17807 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.89;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1306,147,0 chrVI 17835 . C A 1058 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=18.89;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1091,126,0 chrVI 17963 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=17.78;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1402,159,0 chrVI 17987 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=16.26;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1301,147,0 chrVI 18008 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=18.1858;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=12.74;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1345,150,0 chrVI 18011 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=12.92;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1299,147,0 chrVI 18128 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.25;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1329,153,0 chrVI 18339 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.09;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1336,153,0 chrVI 18546 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1751,213,0 chrVI 18585 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.79;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1592,177,0 chrVI 18731 . C T 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=69;Dels=0.00;FS=4.175;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.662;QD=19.90;ReadPosRankSum=1.681;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1406,159,0 chrVI 18810 . G C 1374 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.62;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1407,165,0 chrVI 19057 . A T 2225 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.18;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2258,252,0 chrVI 19333 . T A 571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-1.609;QD=20.39;ReadPosRankSum=1.609;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:66:604,66,0 chrVI 19346 . C T 667 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.62;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:78:700,78,0 chrVI 19352 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=16.74;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:753,84,0 chrVI 19414 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=16.77;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:922,108,0 chrVI 19460 . T A 710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=5.563;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-1.251;QD=19.72;ReadPosRankSum=1.636;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:84:743,84,0 chrVI 19466 . A C 804 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.62;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:837,96,0 chrVI 19556 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.11;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:96:848,96,0 chrVI 19593 . G A 820 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.03;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:853,99,0 chrVI 19604 . A T 757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.515;QD=20.46;ReadPosRankSum=1.639;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:90:790,90,0 chrVI 19711 . C T 453 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.70;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:486,54,0 chrVI 19942 . A G 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.698;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.264;QD=20.19;ReadPosRankSum=1.615;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1224,150,0 chrVI 20049 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.60;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1783,210,0 chrVI 20103 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.85;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1451,168,0 chrVI 20104 . T C 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.546;QD=21.50;ReadPosRankSum=2.380;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1538,180,0 chrVI 20134 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=1.312;QD=19.30;ReadPosRankSum=2.352;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:998,117,0 chrVI 20162 . T C 817 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=17.76;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:850,99,0 chrVI 20170 . A G 727 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=17.73;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:760,90,0 chrVI 20245 . C T 1327 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.43;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1360,153,0 chrVI 20288 . G C 1395 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.37;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1428,165,0 chrVI 20296 . C A 1383 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.69;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1416,159,0 chrVI 20567 . A C 256 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=13.47;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:289,33,0 chrVI 20569 . G A 265 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=13.95;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:298,33,0 chrVI 20573 . T A 267 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=14.05;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:300,33,0 chrVI 20574 . G A 272 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=14.32;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:305,33,0 chrVI 20580 . T C 255 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=24;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;MQRankSum=-1.445;QD=10.63;ReadPosRankSum=1.589;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:33:288,33,0 chrVI 20595 . A T 506 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=15.33;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:539,60,0 chrVI 20636 . C T 947 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=17.22;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:980,108,0 chrVI 20719 . C G 598 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=8.4919;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=12.20;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:75:631,75,0 chrVI 20729 . T G 594 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=13.20;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:627,75,0 chrVI 20768 . C T 572 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=12.71;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:605,69,0 chrVI 20774 . T C 548 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=12.18;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:581,69,0 chrVI 20817 . T C 738 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.45;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:771,90,0 chrVI 20921 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.49;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1137,132,0 chrVI 21171 . A T 1192 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.62;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1225,138,0 chrVI 21267 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8396;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.498;QD=18.16;ReadPosRankSum=1.653;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1631,189,0 chrVI 21408 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.9734;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.70;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1688,198,0 chrVI 21999 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=17.49;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1572,177,0 chrVI 22014 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=15.47;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1271,141,0 chrVI 22204 . C G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.162;QD=17.26;ReadPosRankSum=-0.115;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1345,159,0 chrVI 22833 . T G 1520 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.24;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1553,180,0 chrVI 23882 . C A 1316 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.07;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1349,165,0 chrVI 24061 . G T 1766 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2430;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.21;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1799,210,0 chrVI 24121 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.95;SB=-1.839e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2600,294,0 chrVI 24134 . T C 2646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=153;Dels=0.00;FS=6.108;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=1.033;QD=17.29;ReadPosRankSum=2.954;SB=-1.915e+03 GT:AD:DP:GQ:PL 1/1:3,149:153:99:2679,303,0 chrVI 24214 . G T 2157 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.3052;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.97;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2190,243,0 chrVI 24574 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.87;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1493,174,0 chrVI 24577 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.73;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1681,195,0 chrVI 24857 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.27;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2172,246,0 chrVI 24900 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.05;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2243,258,0 chrVI 25192 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.55;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1092,123,0 chrVI 25195 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.98;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1088,120,0 chrVI 25276 . C A 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.41;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1178,132,0 chrVI 25382 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.02;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1222,141,0 chrVI 25507 . G T 669 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.15;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:702,78,0 chrVI 25517 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.17;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:680,78,0 chrVI 25626 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=17.85;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1086,123,0 chrVI 25628 . C A 1046 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.15;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1079,120,0 chrVI 25898 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.36;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1775,201,0 chrVI 25963 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=78;Dels=0.00;FS=3.129;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.702;QD=20.36;ReadPosRankSum=1.685;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,73:78:99:1621,192,0 chrVI 26058 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.27;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1549,177,0 chrVI 26216 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2649;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=15.10;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1241,144,0 chrVI 26443 . C G 1637 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.21;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1670,192,0 chrVI 26594 . A T 1746 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.10;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1779,198,0 chrVI 26765 . A C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.075;DP=93;Dels=0.00;FS=3.056;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.013;QD=16.84;ReadPosRankSum=2.396;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1599,186,0 chrVI 26814 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.79;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1830,210,0 chrVI 26963 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2056,243,0 chrVI 27046 . T A 1211 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=17.55;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1244,144,0 chrVI 27072 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=11.73;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:866,102,0 chrVI 27092 . T C 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=6.349;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=-0.889;QD=8.43;ReadPosRankSum=2.341;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:69:606,69,0 chrVI 27102 . G C 609 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=8.46;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:78:642,78,0 chrVI 27396 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.00;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2007,234,0 chrVI 27436 . T A 1866 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.97;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1899,216,0 chrVI 27484 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.53;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1860,213,0 chrVI 27574 . T C 403 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=6.01;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:51:436,51,0 chrVI 27592 . A G 729 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=10.41;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:87:762,87,0 chrVI 28039 . G T 1139 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1172,132,0 chrVI 28318 . A G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=3.509;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.438;QD=19.24;ReadPosRankSum=1.690;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1668,192,0 chrVI 28662 . T A 1930 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.53;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1963,216,0 chrVI 29056 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.33;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1502,174,0 chrVI 29440 . A G 1634 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.57;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1667,192,0 chrVI 29449 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.25;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1477,165,0 chrVI 29452 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.03;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1367,153,0 chrVI 29613 . T C 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.405;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.580;QD=17.58;ReadPosRankSum=1.656;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1650,192,0 chrVI 29691 . G T 1352 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.56;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1385,156,0 chrVI 29749 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.53;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1926,207,0 chrVI 29945 . A G 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.033;QD=19.78;ReadPosRankSum=0.883;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1101,129,0 chrVI 30034 . T C 978 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=20.37;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1011,117,0 chrVI 30041 . A G 853 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=50;Dels=0.00;FS=2.660;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;MQRankSum=-1.906;QD=17.06;ReadPosRankSum=2.253;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:886,102,0 chrVI 30044 . C T 899 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;QD=19.98;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:932,105,0 chrVI 30085 . T C 440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=33;Dels=0.00;FS=17.510;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;MQRankSum=-2.586;QD=13.33;ReadPosRankSum=2.780;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:3,29:33:35:473,35,0 chrVI 30616 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.77;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1660,198,0 chrVI 31712 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1255,147,0 chrVI 31848 . T G 1431 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.58;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1464,177,0 chrVI 31946 . A C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.087;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.521;QD=19.11;ReadPosRankSum=1.394;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1619,189,0 chrVI 32018 . T A 1030 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1063,120,0 chrVI 32162 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.62;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1071,117,0 chrVI 32417 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:952,111,0 chrVI 32539 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.71;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1002,114,0 chrVI 32698 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:970,111,0 chrVI 32766 . T G 1033 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1066,120,0 chrVI 32886 . C A 908 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.18;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:941,105,0 chrVI 32964 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=15.1899;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=17.31;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:916,105,0 chrVI 34741 . T G 1304 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.39;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1337,159,0 chrVI 34967 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.38;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1370,162,0 chrVI 35261 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.53;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1541,183,0 chrVI 35310 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.94;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1340,153,0 chrVI 35313 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.44;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1271,141,0 chrVI 35514 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.34;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2044,234,0 chrVI 35525 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.21;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2236,249,0 chrVI 35555 . T A 1757 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0712;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.23;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1790,204,0 chrVI 35600 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=17.82;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1512,168,0 chrVI 35609 . G T 1477 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.17;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1510,171,0 chrVI 35661 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=18.13;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1610,180,0 chrVI 36358 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1142,135,0 chrVI 36394 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.43;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1426,156,0 chrVI 36423 . T G 1171 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.30;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1204,144,0 chrVI 36925 . G T 996 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=21.65;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1029,120,0 chrVI 37171 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.1081;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.76;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1294,147,0 chrVI 37497 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.16;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1631,189,0 chrVI 37537 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2084,237,0 chrVI 38086 . T C 1191 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.85;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1224,141,0 chrVI 38102 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.18;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1284,147,0 chrVI 38588 . G T 980 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.7199;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.85;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1013,111,0 chrVI 38660 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.90;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:67:99:1366,153,0 chrVI 40189 . A G 3208 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.93;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:1,160:161:99:3241,369,0 chrVI 40232 . A C 3899.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.748;QD=20.41;ReadPosRankSum=1.714;SB=-2.133e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3899,444,0 chrVI 40338 . A T 3281.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.03;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3281,366,0 chrVI 40564 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2132,240,0 chrVI 40603 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.260;HaplotypeScore=3.4083;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.614;QD=17.52;ReadPosRankSum=1.653;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1575,180,0 chrVI 40771 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.49;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1775,198,0 chrVI 40841 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.08;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1846,210,0 chrVI 41461 . A C 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.302;QD=19.39;ReadPosRankSum=1.622;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1274,150,0 chrVI 41688 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.62;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1114,126,0 chrVI 41791 . A G 767 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.67;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:800,93,0 chrVI 42037 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.18;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1519,171,0 chrVI 42233 . A G 1322 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1355,153,0 chrVI 43078 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.080;QD=19.55;ReadPosRankSum=1.664;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2047,243,0 chrVI 43673 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1365,150,0 chrVI 43907 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.98;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1229,141,0 chrVI 43976 . A G 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.487;QD=18.59;ReadPosRankSum=1.654;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1743,204,0 chrVI 44192 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.44;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1289,153,0 chrVI 44748 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.11;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1808,210,0 chrVI 44763 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=16.80;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1679,198,0 chrVI 44772 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=15.68;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1601,183,0 chrVI 44835 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9318;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=17.35;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2011,240,0 chrVI 45217 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.19;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1834,213,0 chrVI 45941 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.76;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:1924,222,0 chrVI 46872 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.00;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1724,189,0 chrVI 47567 . A G 1730 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1657;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=15.45;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1763,204,0 chrVI 47820 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.58;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2215,258,0 chrVI 47926 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.955;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.776;QD=21.05;ReadPosRankSum=1.653;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1864,216,0 chrVI 48016 . T A 1118 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=12.42;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1151,129,0 chrVI 48019 . A T 1001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=11.12;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1034,120,0 chrVI 48036 . G C 809 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=9.63;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:96:842,96,0 chrVI 48041 . G A 766 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=9.01;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:90:799,90,0 chrVI 48049 . G C 890 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=9.78;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:923,108,0 chrVI 48257 . G T 2088 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.55;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2121,240,0 chrVI 48275 . T G 1800 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=16.98;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1833,216,0 chrVI 48454 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.68;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1981,225,0 chrVI 48695 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.74;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1251,144,0 chrVI 48728 . C T 888 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.2952;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.08;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:921,102,0 chrVI 48823 . G C 480 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=12.97;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:60:513,60,0 chrVI 48826 . C T 458 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=13.47;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:491,57,0 chrVI 49819 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.064;DP=102;Dels=0.00;FS=2.587;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.219;QD=20.67;ReadPosRankSum=2.305;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2141,226,0 chrVI 49933 . T C 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0252;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.786;QD=21.35;ReadPosRankSum=2.394;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2872,342,0 chrVI 50113 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7744;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.76;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1871,210,0 chrVI 50137 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.40;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1915,213,0 chrVI 50320 . T C 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=199;Dels=0.00;FS=9.455;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.577;QD=17.78;ReadPosRankSum=2.425;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:2,196:199:99:3539,411,0 chrVI 50410 . T C 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.542;QD=22.23;ReadPosRankSum=1.706;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2967,342,0 chrVI 50685 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.91;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1773,204,0 chrVI 50825 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2018,228,0 chrVI 51009 . T A 1578 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.01;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1611,180,0 chrVI 51333 . A G 2649 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.03;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2682,312,0 chrVI 51603 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.36;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2374,267,0 chrVI 51925 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.87;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1901,222,0 chrVI 52024 . A T 1574 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.57;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1607,186,0 chrVI 52648 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=15.95;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1819,216,0 chrVI 52838 . G A 550 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:583,63,0 chrVI 53077 . T A 1279 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.08;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1312,144,0 chrVI 54494 . G A 530 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=76.6784;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=4.86;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:108:66:563,66,0 chrVI 54858 . A G 1152 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.74;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1185,135,0 chrVI 55480 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.55;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1304,150,0 chrVI 55594 . C A 2264 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7441;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.42;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2297,255,0 chrVI 55864 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.459;QD=15.07;ReadPosRankSum=1.641;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1178,138,0 chrVI 56076 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.19;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1338,159,0 chrVI 56854 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4361;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.27;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1933,219,0 chrVI 57286 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.523;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.713;QD=16.87;ReadPosRankSum=1.698;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1771,204,0 chrVI 57463 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1584,177,0 chrVI 57870 . A G 1151 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1184,141,0 chrVI 58170 . T C 632 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:78:665,78,0 chrVI 58319 . C G 652 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.62;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:685,81,0 chrVI 58327 . G A 561 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.02;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:594,69,0 chrVI 58329 . T C 569 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=0.222;QD=14.59;ReadPosRankSum=1.644;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:69:602,69,0 chrVI 58653 . T C 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=62;Dels=0.00;FS=6.992;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.657;QD=19.50;ReadPosRankSum=2.291;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1242,144,0 chrVI 58715 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.67;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1321,156,0 chrVI 58952 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1334,159,0 chrVI 58994 . T C 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.866;QD=20.32;ReadPosRankSum=1.687;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1577,186,0 chrVI 59306 . A C 2015 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2048,240,0 chrVI 59567 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1261,147,0 chrVI 59811 . C A 1031 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.09;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1064,120,0 chrVI 59951 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.66;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1216,141,0 chrVI 59966 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.67;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1144,132,0 chrVI 61686 . C T 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.688;QD=19.05;ReadPosRankSum=1.555;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1557,171,0 chrVI 62177 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.66;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1534,183,0 chrVI 63007 . T C 1107 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.89;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1140,135,0 chrVI 63014 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.77;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1134,129,0 chrVI 63094 . G A 813 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.30;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:99:846,99,0 chrVI 63376 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.06;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1886,213,0 chrVI 63394 . C G 1472 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=17.73;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1505,180,0 chrVI 63471 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6927;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=17.02;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1633,189,0 chrVI 63976 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.26;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1348,153,0 chrVI 64279 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1703,189,0 chrVI 64442 . G C 1912 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1945,228,0 chrVI 64651 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.96;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1626,186,0 chrVI 65029 . T A 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.515;QD=23.68;ReadPosRankSum=1.639;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1785,195,0 chrVI 65065 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.94;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1510,180,0 chrVI 65094 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=16.96;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1220,138,0 chrVI 65110 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=44.2370;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=13.75;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:858,102,0 chrVI 65160 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.12;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:794,87,0 chrVI 65183 . C T 855 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.81;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:888,102,0 chrVI 65298 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.208;QD=22.05;ReadPosRankSum=1.692;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1929,228,0 chrVI 65355 . T A 1692 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.15;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1725,195,0 chrVI 65416 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0238;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.26;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1370,156,0 chrVI 65504 . G A 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.022;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.074;QD=20.02;ReadPosRankSum=-1.644;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1655,179,0 chrVI 65534 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.57;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1630,195,0 chrVI 65802 . T G 1196 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.40;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1229,144,0 chrVI 65947 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=16.25;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1138,132,0 chrVI 66034 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=16.75;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1289,147,0 chrVI 66061 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.10;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1599,177,0 chrVI 66118 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=90;Dels=0.00;FS=2.695;HaplotypeScore=14.3888;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.946;QD=19.59;ReadPosRankSum=2.198;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1796,210,0 chrVI 66151 . A G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=88;Dels=0.00;FS=5.082;HaplotypeScore=7.5442;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.976;QD=19.60;ReadPosRankSum=1.692;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1758,204,0 chrVI 66190 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=99;Dels=0.00;FS=2.659;HaplotypeScore=16.7214;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.088;QD=21.35;ReadPosRankSum=2.374;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2147,255,0 chrVI 66593 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.27;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2547,294,0 chrVI 66664 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=18.66;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1731,198,0 chrVI 66666 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=17.66;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1658,186,0 chrVI 66723 . C G 1178 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=15.71;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1211,141,0 chrVI 66782 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=13.1293;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.01;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1510,168,0 chrVI 67030 . A C 1425 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=17.38;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1458,174,0 chrVI 67042 . A C 1405 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.34;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1438,171,0 chrVI 67057 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.91;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1470,171,0 chrVI 67243 . G T 1326 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.16;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1359,156,0 chrVI 67330 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=15.11;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1106,126,0 chrVI 67471 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.39;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1487,168,0 chrVI 67732 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1734,192,0 chrVI 68194 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.60;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1434,162,0 chrVI 68215 . A G 1635 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.23;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1668,192,0 chrVI 68323 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.03;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1344,159,0 chrVI 68326 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.90;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1353,156,0 chrVI 68375 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3918;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=14.42;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1259,144,0 chrVI 68507 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.57;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1444,159,0 chrVI 68557 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.03;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1155,132,0 chrVI 68669 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=16.40;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1230,138,0 chrVI 68671 . T G 1111 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=15.22;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1144,135,0 chrVI 68703 . C A 930 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.32;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:963,108,0 chrVI 68758 . T C 725 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:87:758,87,0 chrVI 68816 . A G 257 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.36;SB=-8.689e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:290,33,0 chrVI 68825 . A G 274 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.57;SB=-8.153e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:36:307,36,0 chrVI 68855 . A T 400 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.364;QD=17.39;ReadPosRankSum=2.237;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:2,21:23:48:433,48,0 chrVI 68888 . A G 451 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:54:484,54,0 chrVI 68994 . A G 256 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.29;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:33:289,33,0 chrVI 69022 . G A 431 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.52;SB=-6.545e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:464,54,0 chrVI 69107 . A G 983 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1016,117,0 chrVI 69180 . C A 1281 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=26.14;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1314,144,0 chrVI 69214 . T G 819 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=24.82;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:96:852,96,0 chrVI 69412 . A G 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.316;QD=20.12;ReadPosRankSum=1.686;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1542,177,0 chrVI 69547 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.47;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1614,192,0 chrVI 69559 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=17.38;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1580,180,0 chrVI 69598 . T A 1237 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=15.27;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1270,147,0 chrVI 69625 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=16.05;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1221,138,0 chrVI 69634 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.45;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1324,147,0 chrVI 69682 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=16.90;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1419,156,0 chrVI 69706 . G C 1466 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.29;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1499,177,0 chrVI 69817 . T C 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.832;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.573;QD=16.06;ReadPosRankSum=1.692;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1446,168,0 chrVI 69844 . T G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.483;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=6.1457;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.531;QD=18.40;ReadPosRankSum=1.652;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1615,186,0 chrVI 70054 . A C 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.496;QD=14.51;ReadPosRankSum=1.653;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1324,159,0 chrVI 70057 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=15.32;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1366,150,0 chrVI 70372 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.31;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1269,141,0 chrVI 70402 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.828;QD=16.59;ReadPosRankSum=1.682;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1178,138,0 chrVI 70612 . T A 820 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=17.08;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:853,99,0 chrVI 70639 . G A 682 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.49;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:715,81,0 chrVI 70660 . A G 623 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.57;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:656,78,0 chrVI 70747 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.60;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1537,177,0 chrVI 70774 . T C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.608;QD=21.70;ReadPosRankSum=2.376;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1487,174,0 chrVI 70827 . G A 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=3.128;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.791;QD=19.27;ReadPosRankSum=2.373;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1266,141,0 chrVI 70828 . A G 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.02;FS=5.441;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.522;QD=18.20;ReadPosRankSum=1.677;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1216,141,0 chrVI 70891 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.43;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:957,108,0 chrVI 70945 . T C 1094 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.93;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1127,129,0 chrVI 70957 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-1.051;QD=19.34;ReadPosRankSum=1.675;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1213,141,0 chrVI 71083 . A G 2345 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.38;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2378,285,0 chrVI 71099 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.98;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2551,285,0 chrVI 71407 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.89;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2380,267,0 chrVI 71733 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.20;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1771,201,0 chrVI 72064 . C G 1720 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1753,201,0 chrVI 72450 . A C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=102;Dels=0.00;FS=2.991;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.652;QD=18.46;ReadPosRankSum=2.401;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:2,98:102:99:1916,225,0 chrVI 72642 . T C 2122 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4389;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.21;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2155,252,0 chrVI 72837 . G T 1595 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1628,180,0 chrVI 73033 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.36;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1031,123,0 chrVI 74143 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.97;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2291,261,0 chrVI 74825 . A C 298 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;QD=11.46;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:39:331,39,0 chrVI 74850 . A T 192.01 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=7.11;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:225,27,0 chrVI 74858 . A G 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=7.37;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:232,27,0 chrVI 74862 . A G 221 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=8.50;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:254,30,0 chrVI 74863 . A G 205.01 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=7.07;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,26:29:27:238,27,0 chrVI 74902 . T C 272 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;MQRankSum=-1.094;QD=7.16;ReadPosRankSum=1.641;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:36:305,36,0 chrVI 74906 . G A 260 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=7.43;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:33:293,33,0 chrVI 74907 . T C 274 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=7.83;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:36:307,36,0 chrVI 75054 . A G 746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.053;QD=14.63;ReadPosRankSum=1.664;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:90:779,90,0 chrVI 75055 . A T 744 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=14.88;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:777,87,0 chrVI 75069 . G A 623 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=13.54;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:656,72,0 chrVI 75101 . A G 349 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.09;MQ0=0;QD=8.51;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:382,45,0 chrVI 76126 . T C 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.650;QD=18.33;ReadPosRankSum=0.577;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:913,108,0 chrVI 76268 . G T 267 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:33:300,33,0 chrVI 76747 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.50;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1608,189,0 chrVI 76807 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.46;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1538,177,0 chrVI 76851 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.11;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1722,195,0 chrVI 76860 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.59;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1620,180,0 chrVI 76914 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.03;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1818,213,0 chrVI 77256 . G A 2825 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.56;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2858,324,0 chrVI 77640 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.96;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1939,216,0 chrVI 77976 . G A 561 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=14.38;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:66:594,66,0 chrVI 77994 . C G 476 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=14.42;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:60:509,60,0 chrVI 77996 . C T 498 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.09;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:60:531,60,0 chrVI 78036 . T C 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.380;QD=21.92;ReadPosRankSum=2.314;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,34:36:96:822,96,0 chrVI 78069 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.84;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2180,252,0 chrVI 78202 . A G 1579 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1612,192,0 chrVI 78750 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.89;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1733,192,0 chrVI 78805 . G T 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.02;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1799,204,0 chrVI 78930 . A G 2684 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.00;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2717,315,0 chrVI 79016 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.88;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1921,219,0 chrVI 79343 . G C 1787 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.22;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1820,213,0 chrVI 79488 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.27;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1391,162,0 chrVI 79758 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.22;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1954,225,0 chrVI 79809 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.08;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2246,264,0 chrVI 79995 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.23;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1023,117,0 chrVI 80049 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.86;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1221,138,0 chrVI 80226 . C A 1401 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.30;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1434,162,0 chrVI 80232 . T C 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=72;Dels=0.00;FS=7.249;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.126;QD=16.92;ReadPosRankSum=1.682;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,68:72:99:1251,141,0 chrVI 80328 . T A 1125 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.44;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1158,129,0 chrVI 80524 . T C 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=2.547;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.031;QD=22.09;ReadPosRankSum=2.894;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1491,168,0 chrVI 80562 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.88;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1589,183,0 chrVI 80683 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2203,246,0 chrVI 81498 . C G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1770;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=1.097;QD=18.95;ReadPosRankSum=-0.577;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1208,141,0 chrVI 81527 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.69;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1451,162,0 chrVI 81686 . T C 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.3691;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.914;QD=20.62;ReadPosRankSum=-0.385;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1538,160,0 chrVI 81803 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.48;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1837,201,0 chrVI 81877 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=96;Dels=0.00;FS=3.570;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.590;QD=16.67;ReadPosRankSum=1.542;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,90:96:99:1633,192,0 chrVI 81880 . C G 1458 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.51;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1491,177,0 chrVI 81945 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.33;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1802,207,0 chrVI 81965 . T C 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.118;QD=18.66;ReadPosRankSum=1.698;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1974,228,0 chrVI 81991 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.540;QD=21.60;ReadPosRankSum=1.700;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2366,276,0 chrVI 82028 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.224;DP=114;Dels=0.00;FS=8.250;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.194;QD=21.72;ReadPosRankSum=3.380;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:4,109:114:99:2509,294,0 chrVI 82265 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.04;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1404,165,0 chrVI 82455 . G T 1833 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.33;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1866,213,0 chrVI 82466 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.13;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2106,234,0 chrVI 82679 . T A 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.559;QD=23.14;ReadPosRankSum=2.373;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1514,171,0 chrVI 82990 . T G 1902 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.41;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1935,225,0 chrVI 83044 . A G 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.552;QD=20.66;ReadPosRankSum=1.687;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1624,195,0 chrVI 83101 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.51;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1646,180,0 chrVI 83611 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7834;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.57;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1895,222,0 chrVI 83687 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.26;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2151,240,0 chrVI 83889 . C T 736 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.73;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:769,87,0 chrVI 83900 . T C 730 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=8.6899;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.22;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:763,90,0 chrVI 84102 . C G 1138 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.88;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1171,135,0 chrVI 84382 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.06;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1442,165,0 chrVI 84403 . G T 1803 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.72;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1836,204,0 chrVI 84474 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.71;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:99:903,105,0 chrVI 84512 . T C 980 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.27;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1013,117,0 chrVI 84765 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.83;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1083,123,0 chrVI 84768 . G C 943 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.06;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:976,114,0 chrVI 85075 . G T 1851 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.57;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1884,219,0 chrVI 85486 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=86;Dels=0.00;FS=2.945;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.332;QD=22.37;ReadPosRankSum=2.364;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1957,228,0 chrVI 85636 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.25;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1818,204,0 chrVI 85688 . G C 1520 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.00;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1553,180,0 chrVI 85912 . C G 1696 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1729,204,0 chrVI 86446 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.88;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1279,150,0 chrVI 86452 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.88;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1336,147,0 chrVI 86478 . G C 1260 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=16.36;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1293,150,0 chrVI 86499 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=14.81;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1129,126,0 chrVI 86707 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.83;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2199,255,0 chrVI 86721 . G T 2141 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.82;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2174,237,0 chrVI 87400 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.72;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:990,111,0 chrVI 87634 . G A 608 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=17.88;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:641,72,0 chrVI 87647 . T C 485 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.32;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:518,63,0 chrVI 87650 . T C 492 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.57;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:525,60,0 chrVI 87662 . G A 422 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=17.58;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:455,51,0 chrVI 87666 . T A 364 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=16.55;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:397,45,0 chrVI 87680 . C A 276 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=13.14;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:309,36,0 chrVI 87709 . T G 383 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=15.32;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:48:416,48,0 chrVI 87991 . C T 898.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.566;DP=87;Dels=0.00;FS=45.618;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=0;MQRankSum=0.264;QD=10.32;ReadPosRankSum=-4.990;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:35,52:87:58:928,0,58 chrVI 88000 . C T 428.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;DP=78;Dels=0.00;FS=40.705;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=45.12;MQ0=0;MQRankSum=1.006;QD=5.49;ReadPosRankSum=-4.865;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,36:78:99:458,0,162 chrVI 88015 . T C 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=74;Dels=0.00;FS=31.606;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=43.75;MQ0=0;MQRankSum=-2.873;QD=1.69;ReadPosRankSum=-5.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,20:74:99:155,0,354 chrVI 88273 . C T 2026 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.06;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:2059,228,0 chrVI 88918 . G C 1409 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.40;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1442,171,0 chrVI 89086 . A T 679 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=15.43;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:712,78,0 chrVI 89110 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=16.00;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1025,111,0 chrVI 89173 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.1438;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=16.41;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1658,189,0 chrVI 89605 . T A 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=5.7415;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.635;QD=18.95;ReadPosRankSum=0.866;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1170,116,0 chrVI 89727 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=4.122;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.447;QD=20.46;ReadPosRankSum=1.676;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1322,153,0 chrVI 89832 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.31;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1175,135,0 chrVI 90217 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.44;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2348,279,0 chrVI 90244 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.26;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1766,210,0 chrVI 90286 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=16.57;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1591,186,0 chrVI 90659 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.90;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1167,132,0 chrVI 90718 . A G 947 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.33;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:980,114,0 chrVI 90767 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=15.26;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1162,129,0 chrVI 90772 . T G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.096;QD=14.42;ReadPosRankSum=1.684;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1071,126,0 chrVI 90883 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.96;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1746,198,0 chrVI 91159 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.11;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1662,195,0 chrVI 91852 . G T 1734 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0520;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.15;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1767,195,0 chrVI 91926 . G T 1359 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.28;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1392,156,0 chrVI 92236 . A G 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=2.924;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.149;QD=19.11;ReadPosRankSum=2.320;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1122,129,0 chrVI 92416 . A G 184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;DP=38;Dels=0.00;FS=40.147;HaplotypeScore=4.1414;MLEAC=1;MLEAF=0.500;MQ=35.53;MQ0=0;MQRankSum=1.528;QD=4.84;ReadPosRankSum=-3.646;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:14,24:38:67:214,0,67 chrVI 92421 . T C 272 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=8.77;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:305,36,0 chrVI 92425 . G C 39.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.240;QD=2.79;ReadPosRankSum=1.488;SB=-2.792e+00 GT:AD:DP:GQ:PL 0/1:1,13:14:13:69,0,13 chrVI 92426 . G A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.25;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:106,12,0 chrVI 92427 . G A 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.61;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:111,12,0 chrVI 92428 . G C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.04;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:103,12,0 chrVI 92432 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.43;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:80,9,0 chrVI 92434 . T A 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.97;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:102,12,0 chrVI 92435 . A G 92.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=6.15;SB=-2.527e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:125,15,0 chrVI 92437 . A G 88.26 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=5.88;SB=-2.727e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:121,15,0 chrVI 92446 . A G 143.06 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=2.98;SB=-5.271e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:21:176,21,0 chrVI 92462 . G A 415 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=5.85;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:51:448,51,0 chrVI 92465 . A G 90.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=2.142;QD=1.10;ReadPosRankSum=-0.194;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:59,23:82:99:120,0,236 chrVI 92502 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.5336;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=9.40;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1133,126,0 chrVI 92532 . G A 292.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.708;DP=89;Dels=0.00;FS=14.242;HaplotypeScore=2.4983;MLEAC=1;MLEAF=0.500;MQ=35.76;MQ0=0;MQRankSum=-2.562;QD=3.28;ReadPosRankSum=2.245;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:36,53:89:99:322,0,367 chrVI 92533 . G A 292.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.791;DP=89;Dels=0.00;FS=14.639;HaplotypeScore=3.2869;MLEAC=1;MLEAF=0.500;MQ=35.76;MQ0=0;MQRankSum=-2.238;QD=3.28;ReadPosRankSum=2.020;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:35,54:89:99:322,0,350 chrVI 92534 . A G 889 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=10.10;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:922,111,0 chrVI 92555 . A G 323.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;DP=67;Dels=0.00;FS=0.922;HaplotypeScore=21.7708;MLEAC=1;MLEAF=0.500;MQ=33.06;MQ0=0;MQRankSum=0.170;QD=4.82;ReadPosRankSum=-2.011;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:30,37:67:99:353,0,136 chrVI 92566 . A G 162.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=59;Dels=0.00;FS=2.248;HaplotypeScore=21.7330;MLEAC=1;MLEAF=0.500;MQ=31.11;MQ0=0;MQRankSum=-0.948;QD=2.75;ReadPosRankSum=-1.732;SB=-3.320e+02 GT:AD:DP:GQ:PL 0/1:22,37:59:99:192,0,177 chrVI 92570 . A G 345 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=55;Dels=0.00;FS=9.528;HaplotypeScore=35.5178;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;MQRankSum=-0.500;QD=6.27;ReadPosRankSum=2.872;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:45:378,45,0 chrVI 92573 . A G 316 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=52;Dels=0.00;FS=6.454;HaplotypeScore=30.2783;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=0.071;QD=6.08;ReadPosRankSum=2.355;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:42:349,42,0 chrVI 92605 . T C 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=-1.139;QD=13.43;ReadPosRankSum=1.634;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:60:503,60,0 chrVI 92735 . T A 191.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.011;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=82.5138;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=2.289;QD=3.18;ReadPosRankSum=-4.639;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:44,15:60:27:224,27,0 chrVI 92770 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=17.12;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1266,147,0 chrVI 92797 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.50;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1402,165,0 chrVI 93041 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9117;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.17;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2404,270,0 chrVI 93077 . A C 2122 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.39;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2155,252,0 chrVI 93184 . A C 2088 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.67;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2121,246,0 chrVI 93235 . A G 894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-0.560;QD=13.75;ReadPosRankSum=1.626;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:927,108,0 chrVI 93244 . C G 778 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=13.65;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:96:811,96,0 chrVI 93280 . C T 670 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=11.75;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:703,81,0 chrVI 93787 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.69;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2201,246,0 chrVI 94477 . A G 1207 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=15.28;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1240,147,0 chrVI 94480 . G A 1252 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.05;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1285,144,0 chrVI 94481 . T C 1171 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-1.377;QD=15.01;ReadPosRankSum=1.688;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1204,138,0 chrVI 94981 . T C 875 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=13.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:908,105,0 chrVI 95308 . C A 869 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:99:902,102,0 chrVI 95347 . A C 929 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:99:962,111,0 chrVI 95387 . G C 776 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.56;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:809,93,0 chrVI 95585 . T A 1740 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.12;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1773,207,0 chrVI 95601 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.22;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1545,180,0 chrVI 95627 . A G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=6.297;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=-0.492;QD=13.46;ReadPosRankSum=1.561;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1123,132,0 chrVI 95632 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=12.51;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:996,111,0 chrVI 95849 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=16.64;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1231,144,0 chrVI 96436 . T C 671 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.64;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:704,84,0 chrVI 96502 . T C 216 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.64;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:30:249,30,0 chrVI 96730 . T G 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=-1.114;QD=16.00;ReadPosRankSum=1.423;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:929,111,0 chrVI 96802 . G A 578 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.62;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:611,69,0 chrVI 96814 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=11.71;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:478,54,0 chrVI 96991 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.28;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2223,252,0 chrVI 97141 . A G 1411 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.71;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1444,171,0 chrVI 97235 . T C 1403 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.11;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1436,171,0 chrVI 97308 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=13.74;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1297,147,0 chrVI 97581 . A G 565 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=12.28;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:598,69,0 chrVI 97737 . C T 639 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=18.26;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:672,78,0 chrVI 97759 . C A 476 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=15.35;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:509,57,0 chrVI 97763 . A G 482 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=15.55;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:515,60,0 chrVI 97766 . T G 489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=-0.385;QD=13.58;ReadPosRankSum=1.540;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:60:522,60,0 chrVI 97814 . T G 615 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=14.30;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:648,78,0 chrVI 97944 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=19.82;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1222,135,0 chrVI 97961 . A T 881 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=16.31;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:914,105,0 chrVI 98146 . T C 1070 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.19;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1103,126,0 chrVI 98244 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.840;QD=14.38;ReadPosRankSum=1.680;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:982,117,0 chrVI 98282 . C A 1150 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.91;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1183,132,0 chrVI 98302 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=16.55;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1059,126,0 chrVI 98330 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=18.45;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1177,132,0 chrVI 98358 . G T 909 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=15.95;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:942,108,0 chrVI 98377 . G A 820 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=17.45;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:853,96,0 chrVI 98380 . G A 773 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=17.18;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:806,93,0 chrVI 98418 . C T 467 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=12.97;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:500,57,0 chrVI 98419 . C T 511 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=13.81;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:544,60,0 chrVI 98423 . A G 556 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.80;MQ0=0;QD=12.93;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:589,69,0 chrVI 98426 . T C 574 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=13.05;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:607,69,0 chrVI 98428 . A G 608 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=13.51;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:641,75,0 chrVI 98578 . A T 803 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.25;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:836,96,0 chrVI 98590 . A C 657 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=14.93;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:690,81,0 chrVI 98654 . C G 595 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=13.84;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:628,75,0 chrVI 98747 . A T 648 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=22.34;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:681,75,0 chrVI 98785 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=22.39;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:660,75,0 chrVI 98835 . T A 721 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.85;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:754,84,0 chrVI 98867 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.74;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:783,87,0 chrVI 99060 . C T 607 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.97;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:640,72,0 chrVI 99067 . C T 582 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=14.55;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:615,69,0 chrVI 99131 . T C 515 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=15.15;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:548,66,0 chrVI 99231 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.01;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1750,198,0 chrVI 99555 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.34;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1716,192,0 chrVI 99668 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.561;DP=96;Dels=0.00;FS=17.390;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=2;MQRankSum=2.527;QD=16.14;ReadPosRankSum=-0.633;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:9,86:96:99:1582,139,0 chrVI 99734 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=5.159;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.760;QD=19.90;ReadPosRankSum=1.690;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1665,189,0 chrVI 99740 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.37;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1699,192,0 chrVI 99800 . C G 1380 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.05;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1413,162,0 chrVI 99817 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.05;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1405,156,0 chrVI 100276 . G T 2104 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.25;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2137,246,0 chrVI 100302 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.16;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,106:111:99:2049,231,0 chrVI 100449 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.90;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1426,162,0 chrVI 100469 . A G 982 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.53;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1015,120,0 chrVI 100526 . G A 448 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.58;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:481,54,0 chrVI 100551 . C G 519 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=12.66;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:63:552,63,0 chrVI 100558 . A G 552 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.00;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:585,69,0 chrVI 100560 . T C 539 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.72;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:572,69,0 chrVI 100561 . A G 557 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.11;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:590,69,0 chrVI 100566 . T C 572 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=11.44;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:69:605,69,0 chrVI 100594 . T G 818 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=6.463;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;MQRankSum=-1.397;QD=13.19;ReadPosRankSum=1.676;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:851,99,0 chrVI 100633 . A G 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=64;Dels=0.00;FS=2.629;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=0.540;QD=14.91;ReadPosRankSum=2.890;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:987,114,0 chrVI 100677 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.90;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1585,186,0 chrVI 100827 . T C 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.31;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1525,180,0 chrVI 100865 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=15.32;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1136,132,0 chrVI 100887 . G C 837 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=13.50;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:870,102,0 chrVI 100899 . T G 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=-1.354;QD=11.86;ReadPosRankSum=2.381;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:887,102,0 chrVI 100905 . A G 672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.018;DP=67;Dels=0.00;FS=6.456;HaplotypeScore=2.7700;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;MQRankSum=1.050;QD=10.03;ReadPosRankSum=2.340;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:84:705,84,0 chrVI 100932 . G A 696 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=11.41;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:729,84,0 chrVI 100946 . A C 659 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=10.46;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:81:692,81,0 chrVI 100956 . G T 729 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=11.95;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:762,84,0 chrVI 100987 . A G 819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.441;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=0.371;QD=14.62;ReadPosRankSum=1.609;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:852,99,0 chrVI 101006 . C G 748 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=13.60;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:781,93,0 chrVI 101047 . G T 945 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.11;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:978,108,0 chrVI 101203 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=18.68;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1658,189,0 chrVI 101214 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.346;QD=19.39;ReadPosRankSum=1.623;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1894,219,0 chrVI 101264 . A T 1852 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=18.90;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1885,207,0 chrVI 101321 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.12;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1229,141,0 chrVI 101727 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1157,132,0 chrVI 101826 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.06;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1417,156,0 chrVI 101859 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.61;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1280,141,0 chrVI 101913 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.21;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1617,192,0 chrVI 102071 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1566,174,0 chrVI 102489 . T G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.0668;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.000;QD=18.27;ReadPosRankSum=-0.687;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,115:120:99:2225,258,0 chrVI 102675 . G C 1615 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.56;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1648,195,0 chrVI 102726 . A G 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=4.858;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.252;QD=18.84;ReadPosRankSum=1.629;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1936,222,0 chrVI 102880 . A T 1735 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.86;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1768,201,0 chrVI 102899 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.11;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1436,159,0 chrVI 103002 . A G 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.155;QD=15.93;ReadPosRankSum=1.668;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:893,105,0 chrVI 103503 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5279;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.17;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1341,159,0 chrVI 103509 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4220;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.90;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1429,159,0 chrVI 103545 . A G 1416 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=15.91;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1449,168,0 chrVI 103548 . G A 1400 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.73;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1433,162,0 chrVI 103553 . G A 1346 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.84;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1379,156,0 chrVI 103824 . T C 662 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=12.73;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:84:695,84,0 chrVI 103865 . A C 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.224;QD=13.79;ReadPosRankSum=1.676;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:888,105,0 chrVI 104192 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.21;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:766,84,0 chrVI 104240 . C T 477 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.71;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:510,57,0 chrVI 105370 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.49;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1531,183,0 chrVI 105427 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=16.12;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1323,156,0 chrVI 105469 . A C 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=81;Dels=0.00;FS=2.618;HaplotypeScore=12.4109;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.988;QD=14.86;ReadPosRankSum=2.860;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1237,147,0 chrVI 105796 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.88;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1128,132,0 chrVI 106096 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.57;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1277,141,0 chrVI 106194 . A G 1291 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.56;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1324,153,0 chrVI 106291 . G T 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;DP=44;Dels=0.00;FS=104.069;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.84;MQ0=0;MQRankSum=-0.299;QD=2.16;ReadPosRankSum=-4.952;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:30,14:44:99:125,0,119 chrVI 106489 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.10;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1626,192,0 chrVI 106494 . C G 1459 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2251;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.16;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1492,177,0 chrVI 106692 . T C 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=53;Dels=0.00;FS=2.966;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.303;QD=16.57;ReadPosRankSum=2.357;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:911,108,0 chrVI 106837 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6519;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.97;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1920,216,0 chrVI 106991 . A C 732 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.91;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:765,90,0 chrVI 107101 . T A 1078 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.14;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1111,123,0 chrVI 107432 . T C 626 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.97;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:659,78,0 chrVI 107738 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=6.0253;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.22;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1066,120,0 chrVI 107800 . T A 632 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=15.05;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:75:665,75,0 chrVI 107821 . G A 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.533;DP=58;Dels=0.00;FS=13.548;HaplotypeScore=7.4176;MLEAC=1;MLEAF=0.500;MQ=37.09;MQ0=0;MQRankSum=-1.379;QD=3.19;ReadPosRankSum=2.634;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:37,20:58:93:215,0,93 chrVI 107825 . G A 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;DP=56;Dels=0.00;FS=18.698;HaplotypeScore=7.4723;MLEAC=1;MLEAF=0.500;MQ=37.35;MQ0=0;MQRankSum=-2.195;QD=2.39;ReadPosRankSum=1.903;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:38,17:56:99:164,0,131 chrVI 107829 . G A 107.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;DP=55;Dels=0.00;FS=19.090;HaplotypeScore=4.4893;MLEAC=1;MLEAF=0.500;MQ=38.80;MQ0=0;MQRankSum=-2.348;QD=1.95;ReadPosRankSum=-4.048;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:41,14:55:99:137,0,131 chrVI 107835 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DP=62;Dels=0.00;FS=8.004;HaplotypeScore=2.7272;MLEAC=1;MLEAF=0.500;MQ=42.27;MQ0=0;MQRankSum=-2.577;QD=0.79;ReadPosRankSum=-4.046;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:49,13:62:79:79,0,196 chrVI 107844 . G A 353 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7188;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=6.54;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:45:386,45,0 chrVI 108113 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.85;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1125,129,0 chrVI 108416 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.76;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1910,213,0 chrVI 108665 . A G 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.331;QD=17.83;ReadPosRankSum=1.654;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1620,186,0 chrVI 108834 . G C 1400 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.18;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1433,168,0 chrVI 109016 . G C 1549 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.93;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1582,189,0 chrVI 109247 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.16;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1404,168,0 chrVI 109334 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.13;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1659,186,0 chrVI 109402 . A C 2250 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0810;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.75;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2283,267,0 chrVI 109415 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.27;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2189,246,0 chrVI 110004 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.45;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1564,180,0 chrVI 110229 . T C 758 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=32.5372;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=15.47;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:791,93,0 chrVI 110234 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=40.5074;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=14.76;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:84:771,84,0 chrVI 110338 . A C 1356 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.58;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1389,162,0 chrVI 110435 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.09;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1071,117,0 chrVI 110527 . C G 1280 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=15.80;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1313,153,0 chrVI 110528 . G T 1364 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=16.63;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:82:99:1397,156,0 chrVI 110540 . T G 1667 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=17.73;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1700,204,0 chrVI 110685 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.44;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1932,216,0 chrVI 110715 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.80;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1937,210,0 chrVI 110820 . T A 1512 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.38;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1545,177,0 chrVI 110821 . C T 1539 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.11;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1572,180,0 chrVI 110822 . C T 1619 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.40;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1652,189,0 chrVI 110917 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5700;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=20.98;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1837,207,0 chrVI 110943 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.28;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1537,174,0 chrVI 110959 . A T 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.436;QD=18.65;ReadPosRankSum=1.690;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1562,174,0 chrVI 111133 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.86;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2285,258,0 chrVI 111258 . T A 774 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=19.85;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:90:807,90,0 chrVI 111264 . A C 638 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=17.72;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:671,78,0 chrVI 111687 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.94;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1196,138,0 chrVI 111691 . T C 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;MQRankSum=0.425;QD=20.51;ReadPosRankSum=1.602;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1120,132,0 chrVI 111854 . C T 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.019;QD=19.04;ReadPosRankSum=-1.509;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1804,210,0 chrVI 112001 . T A 937 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.30;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:970,108,0 chrVI 112077 . A G 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.290;QD=16.02;ReadPosRankSum=1.659;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:90:786,90,0 chrVI 112154 . T C 563 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=16.56;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:69:596,69,0 chrVI 112269 . C A 685 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.57;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:718,81,0 chrVI 112349 . T C 1103 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1136,132,0 chrVI 112383 . C T 1496 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1529,174,0 chrVI 112418 . T C 1001 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.742;QD=20.43;ReadPosRankSum=1.662;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1034,120,0 chrVI 112425 . A G 907 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:940,111,0 chrVI 112752 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=15.55;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1541,177,0 chrVI 112767 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.45;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1673,186,0 chrVI 112984 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.04;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:72:99:1332,150,0 chrVI 113011 . T C 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=56;Dels=0.00;FS=12.954;HaplotypeScore=9.2282;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.905;QD=14.36;ReadPosRankSum=1.832;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:96:837,96,0 chrVI 113076 . C A 1214 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.12;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1247,141,0 chrVI 113124 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.17;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1178,135,0 chrVI 113247 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1818,213,0 chrVI 113355 . T A 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=1.199;QD=22.66;ReadPosRankSum=1.694;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2118,237,0 chrVI 113586 . C A 1406 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1870;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.54;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1439,165,0 chrVI 113697 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.42;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1761,204,0 chrVI 113778 . T C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.924;HaplotypeScore=7.6062;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=1.055;QD=17.01;ReadPosRankSum=1.653;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1513,180,0 chrVI 113799 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.98;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1751,195,0 chrVI 113910 . A G 734 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.59;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:767,87,0 chrVI 114165 . A T 882 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.33;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:915,102,0 chrVI 114171 . A T 831 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=15.11;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:864,99,0 chrVI 114251 . T C 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=15.6854;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=-0.152;QD=12.10;ReadPosRankSum=2.364;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:2,55:58:87:747,87,0 chrVI 114270 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=14.57;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1053,126,0 chrVI 114275 . C G 1087 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.31;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1120,129,0 chrVI 114340 . T C 1421 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.74;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1454,168,0 chrVI 114541 . T C 2687 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.21;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2720,318,0 chrVI 114798 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.37;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1666,192,0 chrVI 114803 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=15.76;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1530,177,0 chrVI 114918 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.73;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2458,282,0 chrVI 115088 . T C 3396.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.58;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3396,396,0 chrVI 115119 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.069;QD=19.57;ReadPosRankSum=1.702;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2284,273,0 chrVI 115291 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.9326;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.24;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2476,279,0 chrVI 115411 . A C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.602;QD=14.79;ReadPosRankSum=2.890;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1793,213,0 chrVI 115494 . C G 1822 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.71;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1855,219,0 chrVI 116037 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.45;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1526,174,0 chrVI 116045 . T C 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.092;DP=78;Dels=0.00;FS=2.464;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.442;QD=17.53;ReadPosRankSum=3.273;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1400,165,0 chrVI 116186 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.99;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2056,228,0 chrVI 116479 . A G 1955 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.17;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1988,231,0 chrVI 116660 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.171;DP=58;Dels=0.00;FS=13.523;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.953;QD=15.72;ReadPosRankSum=3.171;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:4,53:58:99:945,111,0 chrVI 116839 . G C 1269 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.80;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1302,147,0 chrVI 117533 . C T 1448 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.797;DP=90;Dels=0.00;FS=14.444;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=7;MQRankSum=1.308;QD=16.09;ReadPosRankSum=-0.415;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:11,79:90:86:1481,86,0 chrVI 117614 . C T 1446 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=7;QD=16.43;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1479,168,0 chrVI 117833 . G A 1218 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=8;QD=15.04;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1251,144,0 chrVI 117890 . A G 1939 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.905;DP=109;Dels=0.00;FS=6.542;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=12;MQRankSum=1.568;QD=17.79;ReadPosRankSum=-2.242;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:10,97:109:99:1972,225,0 chrVI 118346 . A G 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=53;Dels=0.00;FS=7.589;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.071;QD=18.19;ReadPosRankSum=2.355;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:2,50:53:99:997,114,0 chrVI 118499 . T C 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=4.907;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.773;QD=16.91;ReadPosRankSum=1.679;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1149,132,0 chrVI 118563 . C A 1205 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1238,135,0 chrVI 118682 . T C 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.782;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;MQRankSum=0.524;QD=18.42;ReadPosRankSum=1.571;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:96:825,96,0 chrVI 118925 . G C 1032 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.06;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1065,123,0 chrVI 119002 . C T 747 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:87:780,87,0 chrVI 119147 . T C 2946 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.60;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2979,348,0 chrVI 119276 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.0656;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.85;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1462,174,0 chrVI 119414 . G A 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4354;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.518;QD=21.86;ReadPosRankSum=0.548;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2613,267,0 chrVI 119659 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.41;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1702,192,0 chrVI 119911 . T C 1791 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.07;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1824,210,0 chrVI 120163 . A G 973 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.71;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1006,117,0 chrVI 120204 . T C 1067 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.05;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1100,129,0 chrVI 120376 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.96;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1456,162,0 chrVI 120550 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1645,183,0 chrVI 120710 . G A 1031 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.62;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1064,117,0 chrVI 121489 . T C 1503 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.11;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1536,180,0 chrVI 121726 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2506,282,0 chrVI 121761 . T A 2009 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.84;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2042,222,0 chrVI 121809 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.38;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1722,192,0 chrVI 121879 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.76;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1469,171,0 chrVI 122143 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.09;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1467,165,0 chrVI 122271 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.20;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1814,210,0 chrVI 127630 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.14;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1717,198,0 chrVI 128175 . T C 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.231;QD=18.82;ReadPosRankSum=1.649;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1614,186,0 chrVI 129074 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1121,126,0 chrVI 131200 . C T 949 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.19;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:982,111,0 chrVI 131599 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.43;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1024,120,0 chrVI 131646 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.58;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1188,138,0 chrVI 133387 . T C 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=5.066;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.142;QD=20.08;ReadPosRankSum=1.675;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1258,150,0 chrVI 133946 . T C 971 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.34;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1004,114,0 chrVI 134095 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.09;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1509,174,0 chrVI 134123 . T G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=69;Dels=0.00;FS=5.987;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.986;QD=18.41;ReadPosRankSum=2.898;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1303,153,0 chrVI 134452 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1745,198,0 chrVI 134570 . C A 1158 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.63;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:59:99:1191,135,0 chrVI 134578 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.13;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1219,138,0 chrVI 135481 . G A 776 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.64;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:809,90,0 chrVI 135874 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1050,117,0 chrVI 136956 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=16.39;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1115,126,0 chrVI 136986 . C A 1229 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.20;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1262,144,0 chrVI 137010 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.77;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1417,159,0 chrVI 137018 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.44;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1379,156,0 chrVI 137241 . C G 1169 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=17.98;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1202,141,0 chrVI 137320 . C T 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=43.2303;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-0.442;QD=17.71;ReadPosRankSum=-1.121;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:936,108,0 chrVI 137350 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.18;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:892,105,0 chrVI 137365 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.40;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:903,102,0 chrVI 137591 . G T 1093 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.62;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1126,126,0 chrVI 137600 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.78;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1011,120,0 chrVI 137634 . C A 1570 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.44;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1603,183,0 chrVI 137722 . A G 429.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.484;DP=132;Dels=0.00;FS=3.615;HaplotypeScore=66.9566;MLEAC=1;MLEAF=0.500;MQ=36.24;MQ0=3;MQRankSum=-2.333;QD=3.25;ReadPosRankSum=3.154;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:62,70:132:99:459,0,834 chrVI 137870 . A G 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;DP=58;Dels=0.00;FS=29.362;HaplotypeScore=3.5507;MLEAC=1;MLEAF=0.500;MQ=44.59;MQ0=0;MQRankSum=-1.387;QD=0.64;ReadPosRankSum=-3.664;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,8:58:67:67,0,999 chrVI 138168 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=5;QD=2.08;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:5,5:10:6:52,6,0 chrVI 138175 . A G 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=6.42;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:2,5:7:9:77,9,0 chrVI 138176 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=2.69;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,5:7:6:50,6,0 chrVI 138181 . C A 118.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=2;QD=9.84;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:18:151,18,0 chrVI 138184 . A T 128.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=2;MQRankSum=-1.741;QD=10.68;ReadPosRankSum=1.044;SB=3.40 GT:AD:DP:GQ:PL 1/1:3,9:12:18:161,18,0 chrVI 138191 . T A 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=2;QD=10.76;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:18:162,18,0 chrVI 138202 . A C 121.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=9.8276;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=1;QD=11.01;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:18:154,18,0 chrVI 138222 . C T 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.47;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:134,15,0 chrVI 138223 . A C 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.18;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:15:132,15,0 chrVI 138231 . C T 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.90;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:102,12,0 chrVI 143943 . G C 1557 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=16.56;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1590,186,0 chrVI 144140 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.41;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1543,174,0 chrVI 144261 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.24;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1774,210,0 chrVI 144279 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.55;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1758,204,0 chrVI 144328 . T A 1765 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.98;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1798,207,0 chrVI 144367 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.70;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1471,174,0 chrVI 144372 . A T 1446 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.03;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1479,171,0 chrVI 144681 . T A 2252 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2285,258,0 chrVI 144966 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2993,336,0 chrVI 145086 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1745,207,0 chrVI 145543 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.30;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1393,162,0 chrVI 145636 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;DP=107;Dels=0.00;FS=7.498;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.778;QD=18.87;ReadPosRankSum=2.125;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,104:107:99:2052,217,0 chrVI 145894 . G A 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.424;HaplotypeScore=5.9072;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.247;QD=18.86;ReadPosRankSum=1.687;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1485,165,0 chrVI 146049 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.34;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1487,174,0 chrVI 146062 . C A 1620 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=16.87;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1653,186,0 chrVI 146074 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.03;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1668,183,0 chrVI 146269 . G C 1508 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.18;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1541,180,0 chrVI 146334 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.34;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1091,126,0 chrVI 146341 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=16.27;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:944,105,0 chrVI 146545 . A G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=3.302;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.787;QD=20.62;ReadPosRankSum=1.642;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1641,192,0 chrVI 146869 . G C 1120 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.50;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1153,135,0 chrVI 146887 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.36;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1057,117,0 chrVI 147018 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.94;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:863,99,0 chrVI 147067 . A T 549 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=12.77;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:582,66,0 chrVI 147109 . G A 516 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=9.38;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:63:549,63,0 chrVI 147121 . C T 606 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=9.47;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:72:639,72,0 chrVI 147361 . G T 1433 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.18;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1466,171,0 chrVI 147466 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.99;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1647,186,0 chrVI 147471 . A T 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=92;Dels=0.00;FS=6.166;HaplotypeScore=2.6855;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-0.922;QD=17.52;ReadPosRankSum=2.723;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1645,183,0 chrVI 147481 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=17.35;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1612,189,0 chrVI 147860 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.69;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1254,144,0 chrVI 147986 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.32;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1516,171,0 chrVI 148368 . C G 1005 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1038,120,0 chrVI 148492 . A G 562 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-2.854;QD=16.53;ReadPosRankSum=2.793;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:3,31:34:69:595,69,0 chrVI 148496 . C T 601 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:69:634,69,0 chrVI 148509 . C T 337 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.05;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:42:370,42,0 chrVI 148520 . A T 307 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.735;QD=19.19;ReadPosRankSum=1.519;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:1,15:16:36:340,36,0 chrVI 148521 . T C 287 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.13;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:320,36,0 chrVI 148539 . A T 74.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:12:107,12,0 chrVI 148554 . A T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.71;SB=-2.864e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:50,6,0 chrVI 148557 . A T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.423;QD=4.36;ReadPosRankSum=1.423;SB=-2.896e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:9:80,9,0 chrVI 148562 . A C 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.15;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:94,12,0 chrVI 148563 . A C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.25;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:95,12,0 chrVI 148564 . T C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.55;SB=-2.751e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:98,12,0 chrVI 148568 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.95;SB=-9.817e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:71,9,0 chrVI 148573 . G A 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.26;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:75,9,0 chrVI 148601 . A C 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.64;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:73,9,0 chrVI 148602 . T G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.72;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:9:75,9,0 chrVI 148605 . T G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.064;QD=1.78;ReadPosRankSum=1.605;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,26:27:9:80,9,0 chrVI 148623 . G A 69.51 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.48;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:12:102,12,0 chrVI 148676 . A G 47.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.20;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:80,9,0 chrVI 148693 . T C 71.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;MQRankSum=-1.737;QD=5.50;ReadPosRankSum=1.470;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:1,12:13:12:104,12,0 chrVI 148700 . C T 100.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=7.71;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:15:133,15,0 chrVI 148751 . G A 215.01 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.33;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:248,27,0 chrVI 148756 . T C 220 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.67;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:30:253,30,0 chrVI 148807 . A G 357 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=15.52;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:390,45,0 chrVI 148828 . C T 538 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=20.69;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:571,63,0 chrVI 148875 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=19.66;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:603,72,0 chrVI 148977 . T C 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.133;QD=21.03;ReadPosRankSum=1.555;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:96:853,96,0 chrVI 148978 . T C 759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.044;QD=19.46;ReadPosRankSum=1.555;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:93:792,93,0 chrVI 149084 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.05;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1370,153,0 chrVI 149493 . A G 1728 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.20;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1761,201,0 chrVI 149514 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.95;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1772,195,0 chrVI 149844 . T A 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.310;HaplotypeScore=4.1534;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.213;QD=18.59;ReadPosRankSum=1.675;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1167,132,0 chrVI 149865 . T A 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=67;Dels=0.00;FS=3.490;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.060;QD=16.93;ReadPosRankSum=1.629;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1167,135,0 chrVI 149894 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.66;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1004,111,0 chrVI 150453 . T C 975 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1008,117,0 chrVI 151008 . T A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.90;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1366,162,0 chrVI 153323 . T A 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.069;DP=110;Dels=0.00;FS=6.385;HaplotypeScore=4.8391;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.414;QD=17.85;ReadPosRankSum=1.779;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1997,208,0 chrVI 153342 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=17.48;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1816,213,0 chrVI 153360 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8137;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.79;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1628,192,0 chrVI 153974 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=15.72;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1196,132,0 chrVI 153977 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=14.34;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1037,120,0 chrVI 154568 . A G 783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.545;QD=21.16;ReadPosRankSum=0.983;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:93:816,93,0 chrVI 154989 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.11;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1625,183,0 chrVI 155037 . T G 1078 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.27;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1111,129,0 chrVI 155068 . T C 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.182;QD=17.86;ReadPosRankSum=1.677;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1158,135,0 chrVI 155127 . G T 1804 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.55;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1837,204,0 chrVI 155178 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1395,159,0 chrVI 155241 . T G 1524 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.05;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1557,186,0 chrVI 156256 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.89;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1465,162,0 chrVI 156375 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.08;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1783,210,0 chrVI 156651 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.58;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2148,240,0 chrVI 156717 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.11;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1722,198,0 chrVI 156765 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=17.70;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1856,210,0 chrVI 156770 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=16.88;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1738,204,0 chrVI 156786 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.826;DP=112;Dels=0.00;FS=6.102;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.587;QD=15.74;ReadPosRankSum=2.936;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:3,107:112:99:1796,204,0 chrVI 156928 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2380,267,0 chrVI 157257 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.11;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2059,240,0 chrVI 157416 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.30;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1133,132,0 chrVI 157723 . C T 571 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.43;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:604,66,0 chrVI 157884 . T A 363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;MQRankSum=1.545;QD=9.81;ReadPosRankSum=1.639;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:45:396,45,0 chrVI 157888 . G T 343 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=24.7027;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=9.27;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:42:376,42,0 chrVI 157913 . G A 232 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=7.25;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:265,30,0 chrVI 158046 . G C 872 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.76;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:99:905,105,0 chrVI 158086 . T C 1116 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.29;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1149,132,0 chrVI 158164 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.54;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1205,132,0 chrVI 158256 . A T 1246 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.10;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1279,147,0 chrVI 158337 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.24;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1534,180,0 chrVI 158348 . T G 1401 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.68;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1434,171,0 chrVI 159117 . T A 1072 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.23;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1105,123,0 chrVI 159224 . A G 729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=51;Dels=0.00;FS=4.202;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.732;QD=14.29;ReadPosRankSum=1.663;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:93:762,93,0 chrVI 159235 . G C 845 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.65;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:878,102,0 chrVI 159285 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.79;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1065,126,0 chrVI 159554 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.48;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1099,126,0 chrVI 159556 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.74;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1176,138,0 chrVI 159607 . T C 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=75;Dels=0.00;FS=2.989;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.383;QD=17.19;ReadPosRankSum=2.250;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1322,159,0 chrVI 159710 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1698,189,0 chrVI 159793 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.65;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1428,162,0 chrVI 159826 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.60;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1372,153,0 chrVI 159955 . T G 1943 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.67;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1976,237,0 chrVI 160603 . A C 1014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.477;QD=14.70;ReadPosRankSum=1.682;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1047,126,0 chrVI 160696 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2732,303,0 chrVI 161071 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.17;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2192,240,0 chrVI 161110 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.3086;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.18;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1578,174,0 chrVI 161167 . T C 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=7.089;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.050;QD=18.11;ReadPosRankSum=2.350;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1373,162,0 chrVI 161436 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.10;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1264,144,0 chrVI 161565 . A G 502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.800;QD=18.59;ReadPosRankSum=1.600;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,25:27:63:535,63,0 chrVI 161720 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=24.19;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1726,192,0 chrVI 161767 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=22.80;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1515,177,0 chrVI 161858 . C T 711 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=17.34;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:744,87,0 chrVI 161872 . T C 559 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=13.31;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:592,72,0 chrVI 161877 . G A 537 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;QD=13.42;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:570,66,0 chrVI 161882 . A G 496 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;QD=12.72;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:529,63,0 chrVI 161895 . C T 339 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=8.69;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:372,42,0 chrVI 161927 . T C 340 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=8.72;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:373,45,0 chrVI 161946 . A G 253 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=91.8546;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=1;QD=6.66;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:1,36:38:36:286,36,0 chrVI 161992 . G A 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.102;DP=57;Dels=0.00;FS=3.424;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=1;MQRankSum=1.417;QD=13.67;ReadPosRankSum=-1.732;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:93:812,93,0 chrVI 162034 . A G 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=1;MQRankSum=2.007;QD=14.60;ReadPosRankSum=2.154;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1508,174,0 chrVI 162183 . A T 886 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.46;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:919,105,0 chrVI 162194 . G C 478 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=15.42;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:511,60,0 chrVI 162197 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=17.27;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:603,72,0 chrVI 162211 . T A 631 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=17.53;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:664,75,0 chrVI 162613 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.61;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1131,126,0 chrVI 162872 . A G 1899 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.42;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1932,228,0 chrVI 163549 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.46;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1621,186,0 chrVI 164083 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1961,213,0 chrVI 164557 . A G 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.080;QD=15.18;ReadPosRankSum=2.386;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1217,144,0 chrVI 164563 . C A 1314 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=17.52;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1347,150,0 chrVI 164755 . G T 1280 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.65;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1313,150,0 chrVI 164883 . G T 1371 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8096;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.42;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1404,156,0 chrVI 166251 . G C 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.6368;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1507,180,0 chrVI 166705 . G C 1653 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.75;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1686,195,0 chrVI 167396 . G C 584 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=14.24;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:617,72,0 chrVI 167402 . C T 513 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=13.86;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:546,60,0 chrVI 167403 . C T 416 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=11.24;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:449,54,0 chrVI 167410 . A G 429 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=40;Dels=0.00;FS=2.612;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=1.386;QD=10.72;ReadPosRankSum=2.824;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:54:462,54,0 chrVI 167431 . A G 378 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=2;QD=11.12;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:48:411,48,0 chrVI 167670 . T C 421 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=19.14;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:54:454,54,0 chrVI 167776 . T C 661 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.2517;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.503;QD=20.66;ReadPosRankSum=1.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,30:32:78:694,78,0 chrVI 167818 . A C 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.088;QD=20.93;ReadPosRankSum=0.927;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:99:933,111,0 chrVI 168102 . T A 825 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.75;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:858,96,0 chrVI 168104 . T C 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=0.121;QD=17.00;ReadPosRankSum=1.652;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:90:764,90,0 chrVI 168117 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=15.30;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:798,90,0 chrVI 168122 . G A 758 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=13.78;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:791,90,0 chrVI 168202 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.01;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1687,198,0 chrVI 168241 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.24;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1766,204,0 chrVI 168408 . G C 1133 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7193;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=15.52;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1166,141,0 chrVI 168673 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.71;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:952,114,0 chrVI 168728 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=16.97;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1391,162,0 chrVI 168886 . A T 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.802;HaplotypeScore=5.3341;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.588;QD=17.46;ReadPosRankSum=0.289;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:871,99,0 chrVI 169123 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.00;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1275,147,0 chrVI 169392 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.68;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1341,156,0 chrVI 169586 . T C 1029 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;MQRankSum=-0.487;QD=16.08;ReadPosRankSum=1.678;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1062,123,0 chrVI 169591 . T C 913 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=15.74;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:946,111,0 chrVI 169592 . T C 938 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=16.17;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:971,111,0 chrVI 169609 . C T 536 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=8.12;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:63:569,63,0 chrVI 169614 . A G 461 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.81;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:57:494,57,0 chrVI 169617 . T C 406 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.25;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:51:439,51,0 chrVI 169618 . G A 395 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.05;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:48:428,48,0 chrVI 169635 . A G 771 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.29;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:93:804,93,0 chrVI 169641 . G A 883 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.01;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:916,102,0 chrVI 169642 . C T 860 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.78;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:893,99,0 chrVI 169649 . T G 751 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=7.08;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:93:784,93,0 chrVI 169653 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=175.9045;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=8.42;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:925,102,0 chrVI 169872 . A G 3123 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.69;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3156,366,0 chrVI 169900 . A C 2712 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.24;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2745,321,0 chrVI 170341 . C A 1442 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1475,165,0 chrVI 170497 . T C 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=62;Dels=0.00;FS=8.263;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.039;QD=17.71;ReadPosRankSum=3.615;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:5,56:62:99:1131,129,0 chrVI 170876 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.00;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1608,183,0 chrVI 171023 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.12;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1180,135,0 chrVI 171051 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.38;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1113,132,0 chrVI 171434 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.42;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:997,114,0 chrVI 171501 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.12;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1079,120,0 chrVI 171967 . T C 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0447;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.866;QD=20.31;ReadPosRankSum=1.650;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1780,207,0 chrVI 172334 . G C 1668 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7652;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.85;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1701,195,0 chrVI 172598 . A T 1055 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.58;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1088,123,0 chrVI 172612 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.45;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1251,144,0 chrVI 172714 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.92;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1330,150,0 chrVI 173376 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.87;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1391,156,0 chrVI 173500 . C T 2240 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.93;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2273,252,0 chrVI 173599 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1603,183,0 chrVI 174484 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.9757;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.13;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1850,222,0 chrVI 174519 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.2456;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.50;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2087,234,0 chrVI 174951 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.5528;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.81;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2133,249,0 chrVI 175060 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.330;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.144;QD=21.21;ReadPosRankSum=0.619;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2409,261,0 chrVI 175153 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.74;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2190,252,0 chrVI 175342 . C A 1428 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1461,165,0 chrVI 175594 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6334;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=16.72;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1371,159,0 chrVI 175597 . G A 1262 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6334;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=15.39;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1295,150,0 chrVI 176167 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.61;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1661,186,0 chrVI 176296 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.414;QD=21.05;ReadPosRankSum=1.692;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1864,216,0 chrVI 176340 . T C 961 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.84;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:994,114,0 chrVI 176410 . G T 938 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=9.57;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:971,108,0 chrVI 176518 . T C 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.0179;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.083;QD=20.75;ReadPosRankSum=1.689;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1714,201,0 chrVI 177366 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.170;HaplotypeScore=6.7411;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.438;QD=19.42;ReadPosRankSum=-0.689;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1664,195,0 chrVI 177400 . G C 1219 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.04;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1252,147,0 chrVI 177453 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.69;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1289,153,0 chrVI 177516 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.95;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1208,132,0 chrVI 177638 . C T 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=83;Dels=0.00;FS=3.456;HaplotypeScore=4.7211;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=0.211;QD=16.67;ReadPosRankSum=0.169;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1417,162,0 chrVI 177672 . C T 917 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=14.33;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:950,111,0 chrVI 177674 . C G 846 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=14.84;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:879,105,0 chrVI 177675 . C T 917 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=15.28;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:950,111,0 chrVI 177693 . T C 912 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=14.03;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:945,114,0 chrVI 177753 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.41;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1234,144,0 chrVI 177798 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.66;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1339,153,0 chrVI 177858 . A G 1529 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.39;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1562,186,0 chrVI 177999 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.77;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1206,138,0 chrVI 178043 . T C 422.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;DP=77;Dels=0.00;FS=20.874;HaplotypeScore=16.0286;MLEAC=1;MLEAF=0.500;MQ=46.84;MQ0=0;MQRankSum=-2.324;QD=5.48;ReadPosRankSum=2.626;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:35,41:77:99:452,0,424 chrVI 178052 . T C 275.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DP=82;Dels=0.00;FS=16.592;HaplotypeScore=2.9506;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=0;MQRankSum=-3.120;QD=3.35;ReadPosRankSum=2.612;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:48,34:82:99:305,0,733 chrVI 178054 . A T 282.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=86;Dels=0.00;FS=16.392;HaplotypeScore=5.3206;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-3.090;QD=3.28;ReadPosRankSum=2.382;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:52,34:86:99:312,0,767 chrVI 178063 . G A 199.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DP=97;Dels=0.00;FS=25.610;HaplotypeScore=9.0087;MLEAC=1;MLEAF=0.500;MQ=48.84;MQ0=0;MQRankSum=-4.766;QD=2.05;ReadPosRankSum=1.055;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:62,35:97:99:229,0,978 chrVI 178083 . A G 232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.686;DP=104;Dels=0.00;FS=10.159;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=0;MQRankSum=-5.115;QD=2.23;ReadPosRankSum=-4.029;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:67,36:104:99:262,0,1265 chrVI 178120 . A C 371.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.323;DP=165;Dels=0.00;FS=16.199;HaplotypeScore=21.1374;MLEAC=1;MLEAF=0.500;MQ=55.65;MQ0=0;MQRankSum=0.493;QD=2.25;ReadPosRankSum=1.000;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:110,48:165:99:401,0,2043 chrVI 178134 . G A 569.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.664;DP=166;Dels=0.00;FS=16.885;HaplotypeScore=13.6663;MLEAC=1;MLEAF=0.500;MQ=56.89;MQ0=0;MQRankSum=-0.600;QD=3.43;ReadPosRankSum=1.157;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:106,60:166:99:599,0,1769 chrVI 178224 . A G 725.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=121;Dels=0.00;FS=18.406;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=51.50;MQ0=0;MQRankSum=2.170;QD=5.99;ReadPosRankSum=2.113;SB=-3.660e+02 GT:AD:DP:GQ:PL 0/1:70,51:121:99:755,0,628 chrVI 178237 . T C 319.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.776;DP=102;Dels=0.00;FS=9.904;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=50.71;MQ0=0;MQRankSum=-0.656;QD=3.13;ReadPosRankSum=-2.304;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:53,49:102:99:349,0,841 chrVI 178425 . G C 1141 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.78;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1174,135,0 chrVI 178663 . T C 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=2.648;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.232;QD=16.49;ReadPosRankSum=2.877;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:99:973,114,0 chrVI 178696 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.24;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1350,147,0 chrVI 178880 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.76;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1337,150,0 chrVI 178912 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.64;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1374,159,0 chrVI 179064 . T C 1088 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.55;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1121,129,0 chrVI 179094 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.14;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1176,138,0 chrVI 179606 . G C 1548 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8631;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.21;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1581,183,0 chrVI 179773 . G C 1992 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4424;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.19;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2025,231,0 chrVI 179825 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.77;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1348,153,0 chrVI 179835 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.10;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1213,141,0 chrVI 179944 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.73;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1735,204,0 chrVI 179957 . T C 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=4.108;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.622;QD=14.72;ReadPosRankSum=1.698;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1564,189,0 chrVI 179981 . T C 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.632;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.655;QD=16.74;ReadPosRankSum=1.694;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1540,183,0 chrVI 180152 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=17.73;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1434,162,0 chrVI 180324 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.78;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1127,132,0 chrVI 180347 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=16.74;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1305,153,0 chrVI 180531 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.65;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1096,120,0 chrVI 180546 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.21;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1109,129,0 chrVI 180611 . G T 792 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.22;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:825,96,0 chrVI 180656 . C G 650 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=16.25;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:78:683,78,0 chrVI 180923 . T C 942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.621;QD=17.77;ReadPosRankSum=1.667;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:975,114,0 chrVI 180962 . T A 482 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=13.39;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:515,60,0 chrVI 180970 . G T 570 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=16.29;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:603,72,0 chrVI 180971 . G A 542 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=15.94;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:575,69,0 chrVI 181094 . A C 615 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=17.57;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:75:648,75,0 chrVI 181100 . C T 578 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=13.14;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:611,69,0 chrVI 181154 . A C 839 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=13.53;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:872,102,0 chrVI 181190 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.49;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1592,171,0 chrVI 181197 . C A 1596 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.00;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1629,186,0 chrVI 181271 . T A 1136 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.1931;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.21;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1169,132,0 chrVI 181301 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.85;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:998,117,0 chrVI 181321 . T G 825 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=11.00;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:858,102,0 chrVI 181345 . A G 726 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=8.75;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:90:759,90,0 chrVI 181364 . C A 746 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=8.20;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:90:779,90,0 chrVI 181370 . A G 665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=5.199;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;MQRankSum=-1.624;QD=6.86;ReadPosRankSum=1.696;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:81:698,81,0 chrVI 181376 . G A 670 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=7.05;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:78:703,78,0 chrVI 181381 . A G 689 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=7.18;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:87:722,87,0 chrVI 181417 . T A 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8725;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=-1.054;QD=13.38;ReadPosRankSum=2.399;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1331,153,0 chrVI 181459 . T G 2076 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.35;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2109,246,0 chrVI 181692 . A G 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-0.476;QD=19.62;ReadPosRankSum=1.656;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1818,213,0 chrVI 181733 . T G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=0.558;QD=19.20;ReadPosRankSum=-0.763;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2299,270,0 chrVI 181817 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.18;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1874,216,0 chrVI 181832 . A G 1660 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.11;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1693,198,0 chrVI 181852 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.205;QD=18.29;ReadPosRankSum=1.695;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1752,204,0 chrVI 181958 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=14.91;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1435,159,0 chrVI 181971 . G C 1290 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=13.72;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1323,156,0 chrVI 182036 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.403;QD=22.34;ReadPosRankSum=1.590;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1664,195,0 chrVI 182094 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.678;QD=19.60;ReadPosRankSum=1.582;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,45:48:99:974,114,0 chrVI 182354 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.96;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2297,267,0 chrVI 182376 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.76;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2226,249,0 chrVI 182440 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.35;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1699,198,0 chrVI 182459 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=18.43;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1876,222,0 chrVI 182910 . A G 564 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=7.42;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:69:597,69,0 chrVI 183018 . A T 1427 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=17.853;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.540;QD=23.39;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1460,162,0 chrVI 183176 . A C 1049 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.31;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1082,126,0 chrVI 183446 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9485;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=10.58;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1345,150,0 chrVI 183467 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=132;Dels=0.00;FS=5.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;MQRankSum=-1.085;QD=12.04;ReadPosRankSum=2.900;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:1622,186,0 chrVI 183476 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.321;DP=128;Dels=0.00;FS=8.729;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-2.171;QD=13.32;ReadPosRankSum=3.376;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:4,124:128:99:1738,201,0 chrVI 183482 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=13.51;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1681,189,0 chrVI 183659 . G T 1249 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.2118;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.59;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1282,147,0 chrVI 183699 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.62;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1763,195,0 chrVI 183726 . T G 1599 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.50;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1632,192,0 chrVI 184083 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=16.92;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1234,141,0 chrVI 184158 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.20;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1730,204,0 chrVI 184225 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.448;QD=17.86;ReadPosRankSum=1.693;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1640,195,0 chrVI 184226 . T G 1525 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=17.13;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1558,186,0 chrVI 184277 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=14.26;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1559,171,0 chrVI 184289 . C G 1310 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.719;DP=107;Dels=0.00;FS=3.177;HaplotypeScore=5.7541;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=0.000;QD=12.24;ReadPosRankSum=1.405;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1343,156,0 chrVI 184291 . T C 1360 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=6.5428;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;MQRankSum=-0.308;QD=12.59;ReadPosRankSum=1.700;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1393,159,0 chrVI 184295 . C T 1412 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=12.72;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1445,159,0 chrVI 184476 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.96;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1853,210,0 chrVI 184479 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.04;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1765,204,0 chrVI 184633 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.6238;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=16.88;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2109,240,0 chrVI 184798 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.5537;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=15.74;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2662,303,0 chrVI 184844 . T A 3189 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.81;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3222,378,0 chrVI 184878 . G A 3326.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.1236;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.74;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:3326,369,0 chrVI 185422 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.09;SB=-1.578e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:2705,312,0 chrVI 186936 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.56;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1860,219,0 chrVI 187771 . G A 655 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:688,75,0 chrVI 188023 . T C 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.106;QD=21.61;ReadPosRankSum=1.662;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1092,126,0 chrVI 188077 . C T 1228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=5.518;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.577;QD=21.54;ReadPosRankSum=0.395;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1261,141,0 chrVI 188203 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.61;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1386,156,0 chrVI 188423 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.16;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1468,168,0 chrVI 188428 . T G 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.981;QD=16.11;ReadPosRankSum=0.355;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1386,165,0 chrVI 188704 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.99;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1572,174,0 chrVI 189156 . G T 1307 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.20;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1340,156,0 chrVI 189828 . A C 801 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=16.02;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:96:834,96,0 chrVI 189847 . G A 861 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.88;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:894,99,0 chrVI 189901 . G A 561 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=15.16;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:594,66,0 chrVI 190129 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.00;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:81:693,81,0 chrVI 190159 . G A 408 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=9.49;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:441,51,0 chrVI 190169 . G T 289 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=9.97;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:36:322,36,0 chrVI 190170 . T C 284 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=22.7599;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=9.79;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:36:317,36,0 chrVI 190258 . T C 560 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=14.74;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:593,69,0 chrVI 190306 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.36;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:575,63,0 chrVI 190339 . C T 873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.258;QD=18.57;ReadPosRankSum=1.659;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:83:906,83,0 chrVI 190534 . A T 976 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.33;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1009,114,0 chrVI 190627 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.67;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:72:669,72,0 chrVI 190798 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.47;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1065,123,0 chrVI 190849 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.87;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1384,159,0 chrVI 191020 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.02;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1420,168,0 chrVI 191180 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.58;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1062,120,0 chrVI 191409 . A T 2068 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.89;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2101,234,0 chrVI 191439 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.59;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1796,204,0 chrVI 191655 . T C 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=8.071;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.144;QD=18.60;ReadPosRankSum=2.368;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1149,116,0 chrVI 191814 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=17.92;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1305,144,0 chrVI 191830 . T C 689 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=10.60;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:84:722,84,0 chrVI 191847 . G T 757 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=10.09;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:87:790,87,0 chrVI 191857 . T A 763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;MQRankSum=-1.488;QD=8.98;ReadPosRankSum=1.691;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:90:796,90,0 chrVI 191860 . T C 629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=-2.421;QD=7.49;ReadPosRankSum=2.391;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:78:662,78,0 chrVI 191885 . G A 942 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=10.83;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:975,108,0 chrVI 191914 . T C 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;MQRankSum=-0.038;QD=12.40;ReadPosRankSum=1.694;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1174,135,0 chrVI 191945 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.14;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1622,195,0 chrVI 191977 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.20;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1835,207,0 chrVI 192288 . T C 2310 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.62;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2343,267,0 chrVI 192376 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.21;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1573,183,0 chrVI 192497 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.20;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1650,183,0 chrVI 192534 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.83;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1502,174,0 chrVI 192551 . T A 1494 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.00;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1527,171,0 chrVI 192564 . A G 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=75;Dels=0.00;FS=2.866;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.483;QD=15.05;ReadPosRankSum=2.383;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1162,135,0 chrVI 192732 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.036;QD=20.09;ReadPosRankSum=1.660;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,95:101:99:2062,240,0 chrVI 192850 . A C 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.505;QD=17.47;ReadPosRankSum=1.675;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1116,129,0 chrVI 192937 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.06;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1297,153,0 chrVI 193023 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.51;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1840,204,0 chrVI 193039 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.61;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1798,207,0 chrVI 193175 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.06;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1442,171,0 chrVI 193303 . G A 537 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5612;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=10.13;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:66:570,66,0 chrVI 193319 . A G 603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-1.525;QD=12.06;ReadPosRankSum=1.594;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:78:636,78,0 chrVI 193344 . A G 709 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=12.66;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:742,87,0 chrVI 193346 . A C 640 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1401;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=11.43;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:673,78,0 chrVI 193410 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.51;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1346,147,0 chrVI 193711 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.56;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1035,120,0 chrVI 193734 . T C 1149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=5.707;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.141;QD=17.68;ReadPosRankSum=2.892;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1182,138,0 chrVI 193872 . T A 2802 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=16.7330;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.76;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2835,324,0 chrVI 194092 . A T 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.523;QD=21.45;ReadPosRankSum=1.667;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2307,255,0 chrVI 194109 . A G 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.169;QD=18.46;ReadPosRankSum=1.072;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2045,237,0 chrVI 194162 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=16.82;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1984,228,0 chrVI 194177 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.68;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2001,234,0 chrVI 194182 . T C 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.296;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.186;QD=16.36;ReadPosRankSum=1.703;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2013,234,0 chrVI 194288 . C G 2164 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=4.2192;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.34;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2197,252,0 chrVI 194310 . A G 2175 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.08;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2208,255,0 chrVI 194319 . C T 2252 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.11;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2285,249,0 chrVI 194320 . G C 2015 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.68;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2048,240,0 chrVI 194505 . T A 1116 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.91;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1149,132,0 chrVI 194593 . G T 1713 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.25;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1746,195,0 chrVI 195150 . T A 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.856;DP=154;Dels=0.00;FS=2.763;HaplotypeScore=17.1582;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.568;QD=15.25;ReadPosRankSum=2.365;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2382,273,0 chrVI 195375 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.59;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1966,231,0 chrVI 195395 . G A 2453 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4948;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.31;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2486,276,0 chrVI 195471 . T C 2793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.300;DP=151;Dels=0.00;FS=26.839;HaplotypeScore=11.3699;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.416;QD=18.50;ReadPosRankSum=4.372;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:7,141:151:99:2826,327,0 chrVI 195636 . T A 2460 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.7282;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.22;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2493,285,0 chrVI 195711 . A G 2222 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.4634;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.20;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2255,261,0 chrVI 196194 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=5.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.681;QD=16.49;ReadPosRankSum=1.681;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1154,135,0 chrVI 196281 . A G 954 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8847;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=14.03;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:987,117,0 chrVI 196491 . A T 1141 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.53;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1174,132,0 chrVI 196563 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.49;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:914,102,0 chrVI 196793 . G C 1649 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=19.87;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1682,198,0 chrVI 196797 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=21.56;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1758,195,0 chrVI 196820 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=15.39;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1264,147,0 chrVI 196830 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.25;MQ0=0;QD=16.07;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1238,138,0 chrVI 196842 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=14.90;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1061,123,0 chrVI 196877 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=15.24;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:917,105,0 chrVI 197081 . G T 1926 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.16;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1959,219,0 chrVI 197726 . A T 1357 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1390,156,0 chrVI 198087 . A G 2044 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.10;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2077,240,0 chrVI 198427 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.69;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1995,222,0 chrVI 198638 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.02;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1493,171,0 chrVI 198647 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=16.42;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1511,168,0 chrVI 198959 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.36;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1891,210,0 chrVI 199207 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.19;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1587,180,0 chrVI 199313 . A C 1405 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8998;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=15.44;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1438,165,0 chrVI 199316 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.38;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1632,177,0 chrVI 199448 . A T 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.695;QD=18.86;ReadPosRankSum=1.546;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1787,204,0 chrVI 199469 . C T 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=77;Dels=0.00;FS=6.193;HaplotypeScore=4.4948;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.009;QD=18.53;ReadPosRankSum=0.368;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1460,165,0 chrVI 199511 . G C 975 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=15.00;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1008,117,0 chrVI 199828 . G C 1524 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.59;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1557,183,0 chrVI 199969 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.98;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1292,147,0 chrVI 200488 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.17;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1851,219,0 chrVI 200563 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.69;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1739,195,0 chrVI 200839 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1225,135,0 chrVI 201758 . T A 483 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.66;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:57:516,57,0 chrVI 201896 . A T 1352 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1385,153,0 chrVI 201948 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1191,132,0 chrVI 201955 . A C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6544;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=1.204;QD=16.20;ReadPosRankSum=-0.793;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:989,117,0 chrVI 201959 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3153;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=15.30;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:859,99,0 chrVI 202052 . A G 778 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:93:811,93,0 chrVI 202686 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=14.66;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1206,138,0 chrVI 202731 . T G 1361 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.80;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1394,165,0 chrVI 202770 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.00;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1413,156,0 chrVI 202970 . A G 1007 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.67;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1040,123,0 chrVI 202995 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.56;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:874,99,0 chrVI 203115 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.95;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:910,102,0 chrVI 203172 . T C 927 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.85;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:960,111,0 chrVI 203623 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=15.49;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:947,105,0 chrVI 203628 . T A 881 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=14.93;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:914,102,0 chrVI 203665 . A G 863 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=14.38;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:896,105,0 chrVI 203799 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.77;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1207,141,0 chrVI 203808 . G C 1327 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.38;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1360,162,0 chrVI 203845 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.73;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1606,186,0 chrVI 204006 . G C 1058 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.03;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1091,129,0 chrVI 204274 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2253;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.43;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2073,228,0 chrVI 204282 . G C 1660 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.5090;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=16.44;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1693,195,0 chrVI 204676 . T C 1395 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.36;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1428,168,0 chrVI 204767 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=18.19;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1998,228,0 chrVI 204770 . G C 1751 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.21;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1784,213,0 chrVI 204812 . A G 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=-1.201;QD=14.53;ReadPosRankSum=1.707;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2023,231,0 chrVI 204826 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=16.45;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2287,255,0 chrVI 204871 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.55;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2648,309,0 chrVI 204918 . T A 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=115;Dels=0.03;FS=2.647;HaplotypeScore=35.6402;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.913;QD=18.42;ReadPosRankSum=2.405;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2151,240,0 chrVI 205105 . G C 1794 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=21.36;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1827,213,0 chrVI 205293 . C T 816 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=17.36;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:93:849,93,0 chrVI 205297 . C A 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.659;DP=47;Dels=0.00;FS=11.950;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.659;QD=17.74;ReadPosRankSum=-0.332;SB=-4.201e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:99:867,99,0 chrVI 205404 . G A 288 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=9.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:36:321,36,0 chrVI 205431 . G A 578 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=13.14;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:69:611,69,0 chrVI 205547 . T A 659 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.59;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:692,81,0 chrVI 205576 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.31;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:709,78,0 chrVI 205793 . A C 1387 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.01;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1420,162,0 chrVI 205932 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.03;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1652,195,0 chrVI 206256 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.08;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1606,192,0 chrVI 206614 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2580;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.00;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2409,270,0 chrVI 206706 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.11;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1772,207,0 chrVI 206775 . C G 1365 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9041;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.45;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1398,162,0 chrVI 206905 . T G 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=6.403;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.605;QD=14.25;ReadPosRankSum=1.649;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1216,144,0 chrVI 206918 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=14.86;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1281,153,0 chrVI 207041 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.13;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1200,138,0 chrVI 207059 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.39;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1080,126,0 chrVI 207253 . A T 1554 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.89;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1587,180,0 chrVI 207279 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6707;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.78;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1342,153,0 chrVI 207374 . G C 1736 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.19;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1769,207,0 chrVI 207456 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.7617;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.83;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3158,366,0 chrVI 207745 . C G 1775 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=18.30;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1808,216,0 chrVI 208120 . G A 766 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.81;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:799,90,0 chrVI 208153 . A G 444 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=14.32;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:54:477,54,0 chrVI 208165 . T C 364 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=13.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,26:28:48:397,48,0 chrVI 208668 . T C 1094 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1127,132,0 chrVI 209202 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.70;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1077,126,0 chrVI 209238 . A C 1016 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.17;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1049,120,0 chrVI 210003 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=20.43;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1218,144,0 chrVI 210512 . A G 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.746;QD=21.33;ReadPosRankSum=2.365;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1270,150,0 chrVI 210664 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=23.23;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1055,117,0 chrVI 210741 . T A 1138 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=14.05;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1171,135,0 chrVI 210742 . C G 1139 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=14.06;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1172,135,0 chrVI 210967 . C G 1324 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.06;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:99:1357,162,0 chrVI 211326 . A G 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=7.566;HaplotypeScore=11.1939;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.543;QD=20.06;ReadPosRankSum=2.407;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2320,279,0 chrVI 211652 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=4.191;HaplotypeScore=9.3226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.303;QD=18.92;ReadPosRankSum=1.633;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2039,234,0 chrVI 212520 . A G 3413.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=20.2341;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.32;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,167:168:99:3413,399,0 chrVI 212940 . A G 3418.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.380;QD=18.28;ReadPosRankSum=0.639;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,186:187:99:3418,390,0 chrVI 213026 . A T 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.902;DP=134;Dels=0.00;FS=2.120;HaplotypeScore=111.0534;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=-0.826;QD=12.76;ReadPosRankSum=1.705;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:1743,201,0 chrVI 213030 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=109.2207;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=10.75;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:1420,165,0 chrVI 213048 . T C 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=130;Dels=0.00;FS=2.696;HaplotypeScore=11.5244;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-0.906;QD=12.11;ReadPosRankSum=2.412;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:1607,186,0 chrVI 213216 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=3.226;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.555;QD=20.67;ReadPosRankSum=1.698;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2183,252,0 chrVI 213243 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.97;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1870,219,0 chrVI 213465 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.34;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1945,216,0 chrVI 213539 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.10;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2354,270,0 chrVI 214532 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4052;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.39;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1744,195,0 chrVI 214589 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.4300;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.51;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1304,153,0 chrVI 214843 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.28;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1960,222,0 chrVI 214901 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.46;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1690,189,0 chrVI 214955 . T A 980 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.30;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1013,111,0 chrVI 215546 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.68;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1094,126,0 chrVI 215586 . T A 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=69;Dels=0.00;FS=7.490;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.071;QD=19.03;ReadPosRankSum=2.377;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1346,153,0 chrVI 215801 . T C 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.178;QD=21.95;ReadPosRankSum=1.700;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2404,285,0 chrVI 216017 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1759,207,0 chrVI 216056 . T G 1795 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1828,213,0 chrVI 216152 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.53;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1322,159,0 chrVI 216508 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.37;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,153,0 chrVI 216513 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.27;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1310,147,0 chrVI 216519 . C A 1057 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.62;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1090,126,0 chrVI 216530 . C A 1050 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=18.75;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1083,120,0 chrVI 216563 . C T 554 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7347;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=10.65;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:587,66,0 chrVI 216585 . A T 1014 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.90;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1047,120,0 chrVI 216972 . T A 1887 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.94;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1920,216,0 chrVI 217173 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.74;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1452,165,0 chrVI 217258 . C G 1326 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0669;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.09;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1359,159,0 chrVI 217299 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5830;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=16.27;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1042,120,0 chrVI 217312 . A C 1173 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.51;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1206,141,0 chrVI 217387 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.95;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1457,162,0 chrVI 217578 . A T 1154 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.75;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1187,132,0 chrVI 218021 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1692,192,0 chrVI 218127 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.53;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1552,174,0 chrVI 218244 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.55;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1460,162,0 chrVI 218594 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1321,153,0 chrVI 218745 . T G 1228 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.06;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1261,147,0 chrVI 218781 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.56;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1285,141,0 chrVI 218949 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.33;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1127,129,0 chrVI 219153 . T C 903 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.21;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:936,111,0 chrVI 219237 . T C 986 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.0070;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.96;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1019,120,0 chrVI 219267 . A G 814 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.70;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:847,102,0 chrVI 219393 . T A 1210 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.21;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1243,138,0 chrVI 219786 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.36;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2006,225,0 chrVI 220253 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3711;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=15.73;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1590,177,0 chrVI 220309 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2573;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.63;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1990,222,0 chrVI 221044 . A G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=84;Dels=0.00;FS=3.032;HaplotypeScore=12.7962;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.876;QD=16.82;ReadPosRankSum=2.391;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1446,171,0 chrVI 221528 . C G 2122 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0250;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=20.80;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2155,249,0 chrVI 221823 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.26;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1132,129,0 chrVI 221898 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=11.70;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:93:817,93,0 chrVI 221904 . G A 662 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0433;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=9.46;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:695,78,0 chrVI 221943 . A T 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=77.0291;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;MQRankSum=0.289;QD=0.48;ReadPosRankSum=1.696;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:9:78,9,0 chrVI 222095 . T C 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=0.822;QD=23.33;ReadPosRankSum=2.917;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,82:88:99:2086,243,0 chrVI 222306 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.84;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1617,186,0 chrVI 222369 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.28;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1934,225,0 chrVI 222373 . C G 1841 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.79;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1874,219,0 chrVI 222435 . A G 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.713;QD=14.76;ReadPosRankSum=1.691;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1288,147,0 chrVI 222453 . C A 1300 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=16.46;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1333,153,0 chrVI 222456 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=17.29;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1330,147,0 chrVI 222477 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.77;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1341,153,0 chrVI 222612 . T A 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.421;QD=16.24;ReadPosRankSum=1.688;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1332,153,0 chrVI 222725 . T C 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=0.520;QD=18.25;ReadPosRankSum=1.689;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1493,174,0 chrVI 222940 . T C 882 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.96;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:915,108,0 chrVI 223291 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.96;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1542,183,0 chrVI 223531 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.42;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1692,195,0 chrVI 223558 . T G 1520 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.03;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1553,180,0 chrVI 223928 . T A 343 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.33;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:42:376,42,0 chrVI 223947 . G A 335 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.63;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:368,42,0 chrVI 224143 . T C 175.03 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:24:208,24,0 chrVI 224816 . T A 2330 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.4996;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.49;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2363,264,0 chrVI 225030 . A C 1793 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0415;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.93;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1826,213,0 chrVI 225259 . A C 932 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.53;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:965,111,0 chrVI 225264 . C G 839 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=13.98;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:872,102,0 chrVI 226036 . G C 1740 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.73;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1773,207,0 chrVI 226370 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.53;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1404,162,0 chrVI 226463 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=14.19;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1296,150,0 chrVI 226791 . G A 756 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=13.75;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:789,87,0 chrVI 226794 . G A 727 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=13.22;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:760,90,0 chrVI 226796 . A G 672 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=12.68;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:84:705,84,0 chrVI 226804 . C A 680 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=11.53;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:81:713,81,0 chrVI 226821 . C G 426 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=42.1374;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=6.76;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:54:459,54,0 chrVI 226921 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9140;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.20;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1680,195,0 chrVI 226930 . A G 1358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.388;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=4.7027;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.051;QD=18.11;ReadPosRankSum=-0.086;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1391,143,0 chrVI 226946 . C G 1397 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.91;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1430,168,0 chrVI 227223 . G T 938 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.05;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:971,111,0 chrVI 227636 . G T 368 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:401,45,0 chrVI 227693 . G A 734 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:33:87:767,87,0 chrVI 228093 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.88;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1517,171,0 chrVI 228332 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.47;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1773,204,0 chrVI 228386 . T C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=4.228;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.463;QD=17.41;ReadPosRankSum=1.694;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1600,189,0 chrVI 228509 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8057;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.724;QD=17.00;ReadPosRankSum=0.504;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1376,165,0 chrVI 228515 . A G 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=79;Dels=0.00;FS=13.841;HaplotypeScore=8.4836;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.261;QD=16.77;ReadPosRankSum=3.319;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:4,74:79:99:1358,156,0 chrVI 228569 . G A 648 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=9.39;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:78:681,78,0 chrVI 228572 . C T 741 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=11.06;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:90:774,90,0 chrVI 228845 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.624;QD=20.00;ReadPosRankSum=1.697;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2073,243,0 chrVI 229188 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3122;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.08;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1519,177,0 chrVI 229320 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.82;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2084,234,0 chrVI 229517 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.11;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1302,150,0 chrVI 229520 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.08;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1384,165,0 chrVI 229802 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.05;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1349,150,0 chrVI 229838 . T A 1641 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.86;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1674,186,0 chrVI 229887 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.07;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1940,219,0 chrVI 229979 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.18;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1365,159,0 chrVI 230540 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.73;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1173,132,0 chrVI 230627 . C T 876 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.47;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:909,105,0 chrVI 230867 . A G 659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.040;QD=16.07;ReadPosRankSum=1.646;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:81:692,81,0 chrVI 230870 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.62;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:75:658,75,0 chrVI 230891 . G A 553 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=14.55;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:586,66,0 chrVI 230918 . C T 373 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=10.08;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:406,48,0 chrVI 230939 . G A 483 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=13.05;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:57:516,57,0 chrVI 231027 . G A 809 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.98;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:842,93,0 chrVI 231098 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.28;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1080,123,0 chrVI 231278 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.23;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1211,141,0 chrVI 231775 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1590,183,0 chrVI 232697 . T C 2913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.560;QD=21.74;ReadPosRankSum=1.576;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2946,342,0 chrVI 233456 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.20;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1220,138,0 chrVI 233627 . A C 718 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.10;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:751,87,0 chrVI 233643 . C T 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=3.979;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.347;QD=18.51;ReadPosRankSum=-0.577;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:96:866,96,0 chrVI 233690 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.52;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1263,141,0 chrVI 233826 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.26;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1019,114,0 chrVI 233830 . T C 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=1.114;QD=17.41;ReadPosRankSum=0.681;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1008,117,0 chrVI 234009 . A C 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.02;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,108,0 chrVI 234085 . G C 1079 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.93;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1112,129,0 chrVI 234160 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.53;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1897,213,0 chrVI 234568 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.59;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1316,153,0 chrVI 234589 . T A 1454 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.41;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1487,168,0 chrVI 234593 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.65;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1332,156,0 chrVI 234694 . A G 2289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=114;Dels=0.00;FS=3.089;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.608;QD=20.08;ReadPosRankSum=1.701;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2322,270,0 chrVI 234904 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.32;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1462,174,0 chrVI 234914 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.82;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1539,174,0 chrVI 235279 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.43;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1619,186,0 chrVI 235282 . T C 1618 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.59;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1651,189,0 chrVI 237433 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.32;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1796,207,0 chrVI 237929 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.41;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1403,156,0 chrVI 237962 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=14.97;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:75:99:1156,129,0 chrVI 237965 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=13.80;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1054,123,0 chrVI 238058 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.78;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1313,153,0 chrVI 238213 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.46;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1356,150,0 chrVI 238621 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.72;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1905,222,0 chrVI 238707 . A G 2425 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.23;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2458,282,0 chrVI 239639 . C G 850 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.45;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:883,105,0 chrVI 239696 . A G 690 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.16;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:723,84,0 chrVI 239828 . G T 921 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.38;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:954,111,0 chrVI 239854 . T C 642 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=16.89;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:81:675,81,0 chrVI 239986 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.19;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1775,195,0 chrVI 240610 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=14.27;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1389,159,0 chrVI 240613 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=15.70;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1462,165,0 chrVI 240940 . A G 2750 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.71;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2783,321,0 chrVI 241150 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.5395;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.102;QD=19.91;ReadPosRankSum=1.701;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2243,267,0 chrVI 241183 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2532;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.24;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1620,186,0 chrVI 241673 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.92;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1267,150,0 chrVI 241795 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:847,96,0 chrVI 241821 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.86;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:951,108,0 chrVI 241949 . T C 1474 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.06;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1507,174,0 chrVI 242843 . C G 1715 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.15;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1748,207,0 chrVI 242888 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.50;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1710,201,0 chrVI 243335 . T A 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.183;QD=22.50;ReadPosRankSum=1.664;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2306,267,0 chrVI 243389 . A G 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.779;DP=105;Dels=0.00;FS=17.101;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.991;QD=17.01;ReadPosRankSum=2.856;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:1819,216,0 chrVI 243400 . C T 1795 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.51;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1828,204,0 chrVI 243524 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.05;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2218,255,0 chrVI 243553 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9191;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.86;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1900,216,0 chrVI 243616 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.144;QD=18.58;ReadPosRankSum=1.696;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1817,213,0 chrVI 243783 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.26;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2201,243,0 chrVI 243805 . T G 2171 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.10;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2204,255,0 chrVI 243974 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8116;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.148;QD=17.17;ReadPosRankSum=1.690;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1458,168,0 chrVI 244123 . T C 907 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.44;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:940,108,0 chrVI 244268 . C A 2083 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.14;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:90:99:2116,231,0 chrVI 244369 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.22;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1187,135,0 chrVI 244381 . G C 1042 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.54;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1075,123,0 chrVI 244420 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=13.64;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1261,141,0 chrVI 244444 . A T 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=5.396;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-1.554;QD=13.43;ReadPosRankSum=1.696;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1363,153,0 chrVI 244543 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6956;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=20.23;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1449,168,0 chrVI 244843 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.21;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1704,192,0 chrVI 245376 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=15.71;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1070,120,0 chrVI 245396 . T C 815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-0.302;QD=12.73;ReadPosRankSum=1.622;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:96:848,96,0 chrVI 245404 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=13.67;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:976,108,0 chrVI 245419 . C T 745 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;QD=10.80;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:778,90,0 chrVI 245429 . T C 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-1.244;QD=10.59;ReadPosRankSum=1.635;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:93:785,93,0 chrVI 245438 . T C 721 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=10.30;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:87:754,87,0 chrVI 245484 . T G 802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=3.078;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=-1.057;QD=14.58;ReadPosRankSum=2.271;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:96:835,96,0 chrVI 245505 . C T 825 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.55;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:858,96,0 chrVI 245636 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.11;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:874,99,0 chrVI 245661 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.75;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1008,114,0 chrVI 245900 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=16.02;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:882,105,0 chrVI 245910 . G A 805 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=15.19;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:838,93,0 chrVI 245962 . T A 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=17.9023;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.051;QD=15.37;ReadPosRankSum=-0.723;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:4,61:65:64:1063,64,0 chrVI 246034 . A T 1391 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.40;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1424,162,0 chrVI 246259 . A C 1092 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.83;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1125,129,0 chrVI 246293 . G A 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.490;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.801;QD=21.24;ReadPosRankSum=-1.681;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1477,168,0 chrVI 246533 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0668;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.26;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2160,243,0 chrVI 246625 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.10;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1552,174,0 chrVI 246893 . A G 1772 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.7871;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.05;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1805,210,0 chrVI 247017 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1551,177,0 chrVI 247441 . T C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.0582;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.684;QD=19.15;ReadPosRankSum=1.684;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1412,146,0 chrVI 247549 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1491,171,0 chrVI 247588 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1592,183,0 chrVI 247915 . A G 819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.485;QD=14.37;ReadPosRankSum=1.670;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:852,99,0 chrVI 248195 . G T 1416 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1449,168,0 chrVI 248365 . A G 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=65;Dels=0.00;FS=3.844;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.402;QD=19.14;ReadPosRankSum=1.567;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1277,147,0 chrVI 248790 . C G 1698 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.52;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1731,195,0 chrVI 248810 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.08;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1468,168,0 chrVI 248816 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=17.24;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1464,162,0 chrVI 248849 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.30;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1919,225,0 chrVI 249021 . A G 2346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.242;QD=20.76;ReadPosRankSum=1.701;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2379,276,0 chrVI 249041 . T C 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-1.374;QD=15.07;ReadPosRankSum=1.692;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,86:98:99:1510,177,0 chrVI 249054 . G C 904 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=14.82;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:937,108,0 chrVI 249566 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.251;QD=15.39;ReadPosRankSum=1.668;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:1710,195,0 chrVI 249889 . T G 1214 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=15.56;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1247,147,0 chrVI 249921 . T C 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=13.757;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.114;QD=15.72;ReadPosRankSum=2.385;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1228,141,0 chrVI 250277 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.3037;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.85;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1650,192,0 chrVI 251006 . C G 1617 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.00;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:77:99:1650,189,0 chrVI 251033 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.54;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1127,129,0 chrVI 251165 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.499;QD=19.32;ReadPosRankSum=1.666;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2042,243,0 chrVI 251816 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=5.396;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.696;QD=14.82;ReadPosRankSum=1.696;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1471,168,0 chrVI 252051 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.33;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1822,201,0 chrVI 252169 . G C 1185 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.43;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1218,141,0 chrVI 252203 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1410,165,0 chrVI 252281 . A G 1278 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.66;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1311,153,0 chrVI 252300 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=50.0699;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=18.24;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1164,129,0 chrVI 252323 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=14.56;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:936,102,0 chrVI 252493 . G T 1335 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.23;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1368,156,0 chrVI 252657 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.33;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1375,162,0 chrVI 253087 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.57;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1227,138,0 chrVI 253095 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.53;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1330,150,0 chrVI 253134 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.62;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1355,156,0 chrVI 253673 . T G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.742;QD=20.81;ReadPosRankSum=1.687;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1635,195,0 chrVI 253709 . T G 1276 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.58;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1309,156,0 chrVI 253927 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.2490;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.15;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2536,279,0 chrVI 254049 . C G 2186 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.68;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2219,255,0 chrVI 254081 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.82;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2074,228,0 chrVI 254393 . T G 2009 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.94;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2042,237,0 chrVI 254401 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.58;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1949,225,0 chrVI 254411 . A G 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=2.922;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-0.888;QD=14.94;ReadPosRankSum=2.402;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1587,186,0 chrVI 254423 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=15.84;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1696,195,0 chrVI 254504 . A G 2854 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2197;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.53;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2887,342,0 chrVI 254764 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=3.239;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.599;QD=19.22;ReadPosRankSum=1.643;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1571,183,0 chrVI 254774 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.442;QD=17.34;ReadPosRankSum=1.585;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1663,192,0 chrVI 254882 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.24;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1966,225,0 chrVI 254963 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.90;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1545,171,0 chrVI 255149 . C T 757 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5276;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=14.56;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:790,87,0 chrVI 255164 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.23;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:981,111,0 chrVI 255242 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1105,126,0 chrVI 255417 . C T 523 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=7.2009;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.34;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:556,63,0 chrVI 255483 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.55;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:658,75,0 chrVI 255905 . A T 715 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.87;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:748,84,0 chrVI 255999 . A G 735 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.86;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:768,90,0 chrVI 256262 . T G 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=3.892;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.450;QD=18.50;ReadPosRankSum=1.662;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:958,111,0 chrVI 256338 . A T 1225 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.1958;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.75;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1258,141,0 chrVI 256599 . T A 647 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.97;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:680,81,0 chrVI 256744 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.21;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1518,177,0 chrVI 256813 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.46;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1288,153,0 chrVI 256814 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.61;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1213,141,0 chrVI 256838 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=17.24;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1309,147,0 chrVI 257077 . C A 1546 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2994;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.08;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1579,180,0 chrVI 257096 . T C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-2.258;QD=17.58;ReadPosRankSum=2.386;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1387,165,0 chrVI 257160 . G C 1188 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.00;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1221,147,0 chrVI 257240 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=3.041;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.017;QD=16.86;ReadPosRankSum=2.381;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1247,147,0 chrVI 257253 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.6307;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.54;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1535,171,0 chrVI 257303 . A T 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.405;QD=19.35;ReadPosRankSum=1.658;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1891,210,0 chrVI 257366 . G A 3063 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.8789;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.98;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3096,345,0 chrVI 257686 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.44;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1724,192,0 chrVI 257852 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.34;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1847,207,0 chrVI 257882 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=85;Dels=0.00;FS=3.063;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.394;QD=20.59;ReadPosRankSum=2.274;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1783,204,0 chrVI 258026 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.83;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1043,117,0 chrVI 258075 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.61;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1798,201,0 chrVI 258094 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=17.40;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1703,201,0 chrVI 258210 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.40;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1682,183,0 chrVI 258414 . A G 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.023;QD=21.25;ReadPosRankSum=1.640;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1627,186,0 chrVI 258520 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.84;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1575,177,0 chrVI 258551 . C A 1796 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.17;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1829,207,0 chrVI 258651 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.09;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2015,240,0 chrVI 258983 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2493;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.22;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2580,288,0 chrVI 259125 . A G 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=1.366;QD=18.91;ReadPosRankSum=1.704;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2359,279,0 chrVI 259181 . A C 2308 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.56;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2341,279,0 chrVI 259296 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.1335;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.62;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2301,258,0 chrVI 259334 . T C 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.121;QD=20.31;ReadPosRankSum=1.630;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2125,246,0 chrVI 259519 . C G 2255 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.78;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2288,267,0 chrVI 259667 . T G 1967 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.07;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2000,234,0 chrVI 259848 . T C 2187 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.53;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2220,264,0 chrVI 259916 . T G 1654 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=17.41;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1687,201,0 chrVI 259924 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=17.76;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1720,201,0 chrVI 259943 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=15.08;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1466,174,0 chrVI 259953 . T A 1289 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=43.6284;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=15.16;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1322,147,0 chrVI 260009 . G A 596 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=12.42;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:69:629,69,0 chrVI 260044 . T G 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=3.188;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.139;QD=18.42;ReadPosRankSum=1.663;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:954,111,0 chrVI 260087 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.50;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1087,132,0 chrVI 260191 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.60;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2587,291,0 chrVI 260396 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.63;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1270,144,0 chrVI 260578 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1062,117,0 chrVI 260606 . G C 916 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.96;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:949,111,0 chrVI 260779 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.12;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1104,126,0 chrVI 260870 . A G 614 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.54;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:75:647,75,0 chrVI 260883 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.42;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:850,93,0 chrVI 261120 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=9.544;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.846;QD=23.13;ReadPosRankSum=2.391;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1953,228,0 chrVI 261363 . A G 1177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.698;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.432;QD=19.62;ReadPosRankSum=2.368;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1210,144,0 chrVI 261434 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.19;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1631,183,0 chrVI 261544 . T A 925 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=16.82;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:958,108,0 chrVI 261556 . A T 957 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=16.50;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:990,114,0 chrVI 261559 . T C 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.229;DP=62;Dels=0.00;FS=3.774;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=1.341;QD=14.50;ReadPosRankSum=1.229;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:932,108,0 chrVI 261588 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.63;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1164,132,0 chrVI 261771 . T A 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2708;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-1.599;QD=18.90;ReadPosRankSum=1.599;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1545,174,0 chrVI 261777 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4821;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.87;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1523,180,0 chrVI 261802 . A T 1312 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.61;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1345,153,0 chrVI 262052 . T C 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4668;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.633;QD=20.68;ReadPosRankSum=1.632;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,103:107:99:2246,258,0 chrVI 262269 . G C 1133 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=38.5605;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=13.99;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1166,135,0 chrVI 262295 . T A 1319 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=13.88;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1352,156,0 chrVI 263140 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.6200;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.59;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2022,225,0 chrVI 263227 . T G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=68;Dels=0.00;FS=6.621;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.143;QD=19.37;ReadPosRankSum=2.341;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1350,162,0 chrVI 263313 . T G 1412 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1445,168,0 chrVI 263330 . T C 1106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.173;QD=17.84;ReadPosRankSum=1.676;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1139,135,0 chrVI 263429 . C G 1227 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.04;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1260,144,0 chrVI 263468 . A C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=3.041;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.375;QD=17.00;ReadPosRankSum=2.387;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1359,162,0 chrVI 263506 . A C 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.77;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1103,129,0 chrVI 263526 . C G 1082 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.65;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:65:99:1115,129,0 chrVI 263550 . A G 1039 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=17.03;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1072,126,0 chrVI 263649 . G T 1038 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.74;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1071,120,0 chrVI 263791 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.70;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1053,123,0 chrVI 263807 . A T 944 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.51;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:977,117,0 chrVI 264038 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.48;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1124,132,0 chrVI 264138 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.434;QD=21.28;ReadPosRankSum=1.695;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2033,234,0 chrVI 264419 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.25;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1438,162,0 chrVI 264434 . T C 1221 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.07;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1254,147,0 chrVI 264809 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.73;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1919,213,0 chrVI 264890 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.93;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1453,162,0 chrVI 265430 . T C 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.594;DP=45;Dels=0.00;FS=5.162;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.054;QD=18.22;ReadPosRankSum=3.341;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:5,40:45:99:853,99,0 chrVI 265792 . T A 1639 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.23;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1672,189,0 chrVI 265986 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.95;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1789,210,0 chrVI 266145 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=1.170;QD=20.89;ReadPosRankSum=1.639;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1579,186,0 chrVI 266222 . T C 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.155;QD=22.91;ReadPosRankSum=1.688;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1866,213,0 chrVI 266266 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=6.1309;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.244;QD=20.42;ReadPosRankSum=1.683;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1483,174,0 chrVI 266282 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=2.9398;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=16.43;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1134,132,0 chrVI 266324 . T G 1204 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.41;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1237,141,0 chrVI 266409 . A T 1145 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7936;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=16.84;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1178,129,0 chrVI 266412 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7883;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.94;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1168,129,0 chrVI 266577 . A T 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.127;QD=14.27;ReadPosRankSum=1.648;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1217,138,0 chrVI 266583 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.98;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1408,162,0 chrVI 266706 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=20.48;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1487,165,0 chrVI 266856 . T A 1737 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.2091;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=19.74;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1770,201,0 chrVI 266889 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=20.31;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1536,180,0 chrVI 267065 . G T 887 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=16.74;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:920,105,0 chrVI 267068 . C T 971 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=35.5134;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.98;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1004,111,0 chrVI 267074 . C T 812 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=40.5309;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.04;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:93:845,93,0 chrVI 267076 . C G 706 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=40.5309;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:87:739,87,0 chrVI 267091 . C A 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.45;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:242,27,0 chrVI 267092 . C A 212.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.60;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:245,27,0 chrVI 267095 . G A 207.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.35;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:240,27,0 chrVI 267097 . A G 193.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.65;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:226,27,0 chrVI 267100 . A G 211.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.55;SB=-2.378e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:244,27,0 chrVI 267104 . A T 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.387;QD=10.45;ReadPosRankSum=1.561;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:1,19:20:27:242,27,0 chrVI 267106 . T A 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.74;SB=-2.378e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:237,27,0 chrVI 267107 . G C 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.74;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:237,27,0 chrVI 267110 . G T 127.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.456;QD=6.69;ReadPosRankSum=0.091;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:21:160,21,0 chrVI 267113 . T C 204.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.091;QD=10.74;ReadPosRankSum=0.456;SB=-1.692e-02 GT:AD:DP:GQ:PL 1/1:1,18:19:27:237,27,0 chrVI 267124 . G T 207.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.00;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:240,27,0 chrVI 267129 . T C 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.10;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:21:182,21,0 chrVI 267131 . G T 139.13 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.63;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:18:172,18,0 chrVI 267136 . G A 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.21;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:157,18,0 chrVI 267140 . G T 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.87;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:106,12,0 chrVI 267144 . C G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.65;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrVI 267146 . G T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.90;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:54,6,0 chrVI 267148 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.82;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:53,6,0 chrVI 267150 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.65;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrVI 267183 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:53,6,0 chrVI 267185 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.67;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:50,6,0 chrVI 267186 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.71;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,28:28:6:51,6,0 chrVI 267191 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:35:6:54,6,0 chrVI 267194 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=0.48;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:47,6,0 chrVI 267195 . G A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:53,6,0 chrVI 267199 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=-0.360;QD=0.52;ReadPosRankSum=1.667;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,36:38:6:51,6,0 chrVI 267201 . A T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=0.229;QD=0.60;ReadPosRankSum=2.321;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,36:38:6:54,6,0 chrVI 267206 . A T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=0.72;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,36:36:6:57,6,0 chrVI 267222 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.63;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:52,6,0 chrVI 267226 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.69;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:54,6,0 chrVI 267227 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.54;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:49,6,0 chrVI 267229 . G A 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.78;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:57,6,0 chrVI 267237 . T C 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.88;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:102,12,0 chrVI 267240 . G T 81.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.20;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:114,12,0 chrVI 267241 . T C 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.91;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,37:37:12:103,12,0 chrVI 267246 . G A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.25;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:109,12,0 chrVI 267247 . C T 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.28;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:110,12,0 chrVI 267248 . A G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.25;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:109,12,0 chrVI 267251 . C T 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.10;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:12:104,12,0 chrVI 267253 . A G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.23;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:74,9,0 chrVI 267260 . C T 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.43;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:15:135,15,0 chrVI 267262 . A G 89.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.195;QD=2.13;ReadPosRankSum=2.833;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:3,39:42:15:122,15,0 chrVI 267268 . A C 99.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.473;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.299;QD=2.48;ReadPosRankSum=0.866;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,39:40:15:132,15,0 chrVI 267271 . G A 101.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.788;QD=3.07;ReadPosRankSum=1.523;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:15:134,15,0 chrVI 267272 . C A 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.95;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:15:130,15,0 chrVI 267273 . A G 99.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.208;QD=3.01;ReadPosRankSum=1.628;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:15:132,15,0 chrVI 267279 . C T 56.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.7403;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.053;QD=1.71;ReadPosRankSum=1.628;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:1,32:33:12:89,12,0 chrVI 267283 . T C 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.49;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:15:134,15,0 chrVI 267286 . A C 65.63 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;QD=2.34;SB=11.36 GT:AD:DP:GQ:PL 1/1:0,27:28:12:98,12,0 chrVI 267290 . G A 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.55;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:15:132,15,0 chrVI 267301 . T C 126.13 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.48;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:159,18,0 chrVI 267304 . G A 126.13 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.48;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:159,18,0 chrVI 267314 . G A 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.84;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:110,12,0 chrVI 267316 . G A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.59;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:106,12,0 chrVI 267319 . G C 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.09;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:98,12,0 chrVI 267324 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.28;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:54,6,0 chrVI 267326 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.28;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:54,6,0 chrVI 267327 . A G 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.39;SB=-1.766e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:45,6,0 chrVI 267333 . G C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.48;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:51,6,0 chrVI 267343 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.16;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrVII 364 . T C 50.97 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;QD=1.46;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:83,9,0 chrVII 366 . C T 12.31 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.642;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=25.71;MQ0=0;MQRankSum=0.698;QD=0.35;ReadPosRankSum=3.152;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:9,26:35:17:42,0,17 chrVII 378 . G C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=1.41;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:77,9,0 chrVII 379 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=1.56;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:82,9,0 chrVII 382 . T C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=1.37;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:76,9,0 chrVII 384 . C T 51.97 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=1.62;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:84,9,0 chrVII 395 . T A 50.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=0;MQRankSum=1.417;QD=1.16;ReadPosRankSum=1.654;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,43:44:9:83,9,0 chrVII 401 . C A 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=2.43;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:130,15,0 chrVII 402 . G T 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=2.36;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:15:127,15,0 chrVII 404 . T A,G 58.45 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.66;MQ0=2;QD=1.39;SB=-1.452e+00 GT:AD:DP:GQ:PL 1/2:2,22,18:42:32:117,41,32,76,0,70 chrVII 414 . A G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.2490;MLEAC=1;MLEAF=0.500;MQ=24.73;MQ0=3;MQRankSum=2.657;QD=0.60;ReadPosRankSum=-0.455;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:32,21:53:57:62,0,57 chrVII 459 . C T 88.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.6338;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=6;MQRankSum=0.503;QD=1.42;ReadPosRankSum=-2.142;SB=0.026 GT:AD:DP:GQ:PL 0/1:14,48:62:31:118,0,31 chrVII 461 . C T 183.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=16.3193;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=7;MQRankSum=-0.919;QD=2.91;ReadPosRankSum=-0.833;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:12,51:63:18:213,0,18 chrVII 466 . A C 274 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=56.9292;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=7;QD=4.09;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:36:307,36,0 chrVII 471 . T C 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.585;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=62.5174;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=7;MQRankSum=-0.953;QD=2.04;ReadPosRankSum=1.116;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,49:68:72:169,0,72 chrVII 502 . A T 179.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.236;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=8;MQRankSum=-0.499;QD=2.76;ReadPosRankSum=0.672;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:10,55:65:2:209,2,0 chrVII 507 . C T 197.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=5;MQRankSum=-0.490;QD=3.41;ReadPosRankSum=1.284;SB=-2.550e+00 GT:AD:DP:GQ:PL 1/1:7,51:58:4:228,4,0 chrVII 508 . C T 195.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=5;MQRankSum=-1.732;QD=3.36;ReadPosRankSum=0.098;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:6,52:58:3:225,3,0 chrVII 509 . C G 183.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.350;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9133;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=5;MQRankSum=-0.490;QD=3.16;ReadPosRankSum=1.424;SB=-3.022e+00 GT:AD:DP:GQ:PL 1/1:7,51:58:3:213,3,0 chrVII 520 . T G 204.01 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=6;QD=2.87;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,71:71:27:237,27,0 chrVII 568 . A C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=3;QD=0.48;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:2,41:43:6:52,6,0 chrVII 575 . C G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=2;QD=0.61;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:1,32:34:6:52,6,0 chrVII 641 . G A 283.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.897;DP=22;Dels=0.00;FS=6.662;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=3;MQRankSum=1.616;QD=12.89;ReadPosRankSum=-0.070;SB=-1.952e+01 GT:AD:DP:GQ:PL 1/1:4,17:22:12:316,12,0 chrVII 673 . T A 1089 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=75;Dels=0.00;FS=5.601;HaplotypeScore=15.0420;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=4;MQRankSum=0.326;QD=14.52;ReadPosRankSum=1.632;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1122,126,0 chrVII 722 . C T 1176.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.405;DP=130;Dels=0.00;FS=66.941;HaplotypeScore=6.8169;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=9;MQRankSum=-0.596;QD=9.05;ReadPosRankSum=5.573;SB=-3.490e+02 GT:AD:DP:GQ:PL 0/1:39,89:130:99:1206,0,239 chrVII 723 . T C 1151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;DP=130;Dels=0.00;FS=57.162;HaplotypeScore=8.1131;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=11;MQRankSum=-2.247;QD=8.85;ReadPosRankSum=5.566;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:37,89:130:99:1181,0,230 chrVII 733 . T A 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DP=133;Dels=0.00;FS=43.968;HaplotypeScore=5.7470;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=18;MQRankSum=1.758;QD=1.39;ReadPosRankSum=-6.471;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,23:133:99:215,0,1203 chrVII 735 . A G 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.778;DP=135;Dels=0.00;FS=40.991;HaplotypeScore=4.5781;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=20;MQRankSum=2.567;QD=1.09;ReadPosRankSum=-6.451;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,22:135:99:177,0,1229 chrVII 784 . T A 1799 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.119;DP=138;Dels=0.00;FS=3.037;HaplotypeScore=9.6631;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=23;MQRankSum=-1.435;QD=13.04;ReadPosRankSum=-2.407;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:14,124:138:99:1832,204,0 chrVII 927 . T C 225 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;MQRankSum=2.230;QD=4.02;ReadPosRankSum=2.362;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:30:258,30,0 chrVII 932 . G C 198.01 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=3.60;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:27:231,27,0 chrVII 934 . T C 224 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.07;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:30:257,30,0 chrVII 937 . A T 290 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=4.75;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:36:323,36,0 chrVII 940 . C T 351 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=5.57;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:42:384,42,0 chrVII 954 . A G 493 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=8.65;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:60:526,60,0 chrVII 978 . A G 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=1;MQRankSum=-1.048;QD=10.04;ReadPosRankSum=1.687;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:93:806,93,0 chrVII 988 . G T 827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=1;QD=10.34;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:96:860,96,0 chrVII 992 . A G 868 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=1;QD=10.21;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:901,105,0 chrVII 1025 . A G 1042 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=1;QD=11.98;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1075,123,0 chrVII 1046 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=103;Dels=0.00;FS=7.360;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=1;MQRankSum=1.388;QD=10.62;ReadPosRankSum=2.401;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1127,129,0 chrVII 1062 . T C 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.745;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;MQRankSum=-1.039;QD=12.05;ReadPosRankSum=1.694;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1130,129,0 chrVII 1070 . A T 1105 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=1.623;QD=11.63;ReadPosRankSum=1.696;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1138,129,0 chrVII 1073 . G T 1217 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=67.4099;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=13.09;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1250,132,0 chrVII 1080 . C T 1142 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=67.3664;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=13.13;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1175,126,0 chrVII 1136 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=16.51;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1321,150,0 chrVII 1137 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=16.99;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1375,150,0 chrVII 1171 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=17.34;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1524,171,0 chrVII 1314 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=21.17;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1621,174,0 chrVII 1354 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=22.00;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1727,198,0 chrVII 1365 . T A 1648 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=21.97;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1681,192,0 chrVII 1411 . A T 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=3.140;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;MQRankSum=0.509;QD=17.40;ReadPosRankSum=1.681;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1251,141,0 chrVII 1422 . G C 1019 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=15.44;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1052,120,0 chrVII 1535 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=17.57;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1052,117,0 chrVII 1557 . G T 1048 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=14.56;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1081,117,0 chrVII 1562 . G C 1051 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=14.20;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1084,120,0 chrVII 1769 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=21.39;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1338,150,0 chrVII 1782 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=21.02;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1273,144,0 chrVII 1787 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=18.83;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1144,135,0 chrVII 1808 . A G 1081 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=18.96;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1114,132,0 chrVII 1863 . A G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=1.397;QD=20.97;ReadPosRankSum=1.676;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1333,150,0 chrVII 1884 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=23.97;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1519,162,0 chrVII 1893 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=21.56;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1305,147,0 chrVII 1959 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.69;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1005,111,0 chrVII 2026 . A G 556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;MQRankSum=-0.839;QD=17.94;ReadPosRankSum=1.621;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:66:589,66,0 chrVII 2081 . C A 798 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=16.29;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:93:831,93,0 chrVII 2086 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=18.04;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:93:881,93,0 chrVII 2100 . C A 797 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.53;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:87:830,87,0 chrVII 2184 . C G 297 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=22.85;SB=-2.800e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:36:330,36,0 chrVII 2188 . G A 360 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.50;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:42:393,42,0 chrVII 2232 . C T 240 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.82;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:273,30,0 chrVII 2283 . C A 135.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:168,18,0 chrVII 2300 . A G 103.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.736;QD=17.21;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:15:136,15,0 chrVII 2357 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrVII 2572 . A T 403 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:48:436,48,0 chrVII 2899 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1198,129,0 chrVII 3367 . G C 1569 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1602,183,0 chrVII 3835 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.72;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1315,144,0 chrVII 4017 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3678;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.60;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2112,237,0 chrVII 4176 . C A 1826 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.00;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1859,201,0 chrVII 4261 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.25;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1627,180,0 chrVII 4308 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.1501;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.89;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1803,201,0 chrVII 4504 . T C 1373 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.07;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1406,156,0 chrVII 4516 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=60.5344;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.73;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1438,156,0 chrVII 4671 . T C 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.982;QD=24.03;ReadPosRankSum=1.696;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2364,258,0 chrVII 4789 . G A 3300.01 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.58;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3300,354,0 chrVII 4981 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=4.058;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.608;QD=18.83;ReadPosRankSum=1.691;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1652,186,0 chrVII 4998 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1112;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.144;QD=17.56;ReadPosRankSum=1.667;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1894,213,0 chrVII 5025 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.82;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2009,213,0 chrVII 5092 . C A 2171 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.38;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2204,237,0 chrVII 5138 . C A 3320.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.53;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3320,366,0 chrVII 5182 . C T 3417.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.47;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,184:185:99:3417,378,0 chrVII 5533 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.77;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3099,333,0 chrVII 5754 . A C 1442 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.97;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1475,168,0 chrVII 5800 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.98;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1608,171,0 chrVII 5883 . G A 1629 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1662,177,0 chrVII 6091 . T A 193.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;MQRankSum=1.423;QD=16.09;ReadPosRankSum=1.423;SB=-5.397e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:24:226,24,0 chrVII 6182 . T A 1482 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=25.12;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1515,168,0 chrVII 6476 . C A 1092 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=5;QD=12.70;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1125,126,0 chrVII 6509 . A G 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=94;Dels=0.00;FS=6.756;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=1;MQRankSum=-1.443;QD=9.14;ReadPosRankSum=2.397;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:892,102,0 chrVII 6545 . T C 673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=94;Dels=0.00;FS=52.201;HaplotypeScore=4.4401;MLEAC=1;MLEAF=0.500;MQ=22.92;MQ0=5;MQRankSum=2.773;QD=7.16;ReadPosRankSum=0.924;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:21,73:94:99:703,0,140 chrVII 6557 . A G 1220 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=4;QD=11.84;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1253,144,0 chrVII 6575 . C T 1476 filter AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=7;QD=11.71;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1509,168,0 chrVII 6605 . A G 1254.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=129;Dels=0.00;FS=144.677;HaplotypeScore=8.7980;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=11;MQRankSum=5.035;QD=9.72;ReadPosRankSum=3.387;SB=-3.392e-01 GT:AD:DP:GQ:PL 1/1:23,106:129:14:1287,14,0 chrVII 6669 . T G 661 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.5152;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=6;QD=8.47;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,77:78:84:694,84,0 chrVII 6675 . G A 450 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.147;DP=63;Dels=0.00;FS=17.709;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=4;MQRankSum=1.204;QD=7.14;ReadPosRankSum=1.028;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:2,61:63:57:483,57,0 chrVII 6679 . G A 413 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.49;MQ0=4;QD=7.00;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:54:446,54,0 chrVII 6702 . G T 260 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=3;QD=7.22;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:1,35:36:36:293,36,0 chrVII 6703 . A G 234 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=3;QD=6.50;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:267,33,0 chrVII 6712 . T C 82.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.909;DP=27;Dels=0.00;FS=10.607;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.46;MQ0=4;MQRankSum=-1.473;QD=3.05;ReadPosRankSum=2.128;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:3,24:27:15:115,15,0 chrVII 6724 . A G 116.13 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=4;QD=6.11;SB=-8.088e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:149,18,0 chrVII 6763 . T C 364 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=41;Dels=0.00;FS=5.898;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=6;MQRankSum=-0.644;QD=8.88;ReadPosRankSum=1.634;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:45:397,45,0 chrVII 6820 . A G 397.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;DP=98;Dels=0.00;FS=1.141;HaplotypeScore=28.0373;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=9;MQRankSum=0.583;QD=4.05;ReadPosRankSum=2.130;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:53,45:98:99:427,0,192 chrVII 6822 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;DP=99;Dels=0.00;FS=38.713;HaplotypeScore=18.3108;MLEAC=1;MLEAF=0.500;MQ=19.72;MQ0=9;MQRankSum=0.689;QD=0.14;ReadPosRankSum=0.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,13:99:44:44,0,561 chrVII 6836 . C A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;DP=105;Dels=0.00;FS=2.607;HaplotypeScore=15.8999;MLEAC=1;MLEAF=0.500;MQ=18.68;MQ0=9;MQRankSum=-0.453;QD=0.44;ReadPosRankSum=-1.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,28:105:76:76,0,598 chrVII 6840 . C T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.232;DP=100;Dels=0.00;FS=45.358;HaplotypeScore=15.1112;MLEAC=1;MLEAF=0.500;MQ=18.98;MQ0=6;MQRankSum=1.195;QD=0.94;ReadPosRankSum=1.811;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,15:100:99:124,0,519 chrVII 6870 . T C 310.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.853;DP=85;Dels=0.00;FS=18.453;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=8;MQRankSum=-0.923;QD=3.65;ReadPosRankSum=4.482;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:29,56:85:99:340,0,171 chrVII 6871 . C T 312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.690;DP=85;Dels=0.00;FS=18.453;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=8;MQRankSum=-0.857;QD=3.67;ReadPosRankSum=4.515;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:30,54:85:99:342,0,139 chrVII 6899 . C G 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DP=66;Dels=0.00;FS=22.781;HaplotypeScore=6.8878;MLEAC=1;MLEAF=0.500;MQ=14.22;MQ0=9;MQRankSum=0.764;QD=1.18;ReadPosRankSum=-1.173;SB=0.782 GT:AD:DP:GQ:PL 0/1:45,19:66:99:108,0,130 chrVII 7020 . C A 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=5;QD=2.23;SB=-3.026e+01 GT:AD:DP:GQ:PL 1/1:4,8:12:6:58,6,0 chrVII 7021 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=5;QD=2.15;SB=-2.926e+01 GT:AD:DP:GQ:PL 1/1:2,10:12:6:57,6,0 chrVII 7027 . T A 52.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=7;QD=3.53;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:2,10:15:9:85,9,0 chrVII 7078 . A T 108.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=7;QD=6.77;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:141,15,0 chrVII 7079 . G T 108.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=7;QD=6.77;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:141,15,0 chrVII 7191 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=0;QD=3.75;SB=-4.985e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:77,9,0 chrVII 7193 . C G 43.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=0;QD=3.66;SB=-4.885e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:76,9,0 chrVII 7267 . T A 94.26 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=8;QD=4.49;SB=-7.230e+01 GT:AD:DP:GQ:PL 1/1:5,16:21:15:127,15,0 chrVII 7283 . G A 101.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.061;DP=18;Dels=0.00;FS=7.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=7;MQRankSum=2.003;QD=5.63;ReadPosRankSum=1.296;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:8,10:18:15:134,15,0 chrVII 7299 . A G 71.51 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=6.7482;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=6;QD=4.21;SB=-4.745e+01 GT:AD:DP:GQ:PL 1/1:6,11:17:12:104,12,0 chrVII 7379 . C T 50.97 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=0;QD=2.68;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:9:83,9,0 chrVII 7391 . C A 50.97 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=0;QD=3.00;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:83,9,0 chrVII 7400 . T C 47.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=0;QD=2.82;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:80,9,0 chrVII 7504 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=3;QD=1.57;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrVII 7528 . G A 136.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=1;QD=9.72;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:169,18,0 chrVII 7535 . T C 186.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=1;MQRankSum=-1.369;QD=9.30;ReadPosRankSum=1.552;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:2,18:20:24:219,24,0 chrVII 7604 . C T 400 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=1;QD=10.81;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:48:433,48,0 chrVII 7636 . G T 265 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=1;QD=9.14;SB=-8.200e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:33:298,33,0 chrVII 7641 . G A 181.03 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=1;QD=7.24;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:24:214,24,0 chrVII 7668 . T C 60.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=1;QD=4.65;SB=-4.255e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:12:93,12,0 chrVII 7671 . A T 59.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.58;MQ0=1;QD=4.58;SB=-4.255e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:12:92,12,0 chrVII 7683 . C T 38.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.54;MQ0=1;QD=3.25;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:9:71,9,0 chrVII 7689 . G T 64.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=1;QD=3.79;SB=-4.555e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:12:97,12,0 chrVII 7723 . T C 444 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=10.33;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:57:477,57,0 chrVII 7809 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=29;Dels=0.00;FS=10.843;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=12;MQRankSum=-1.203;QD=2.31;ReadPosRankSum=-2.839;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:9,20:29:97:97,0,174 chrVII 7877 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;DP=33;Dels=0.00;FS=64.364;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=3;MQRankSum=-2.410;QD=1.00;ReadPosRankSum=-0.689;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:22,11:33:63:63,0,442 chrVII 7886 . C T 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.847;DP=37;Dels=0.00;FS=80.645;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.95;MQ0=3;MQRankSum=-1.156;QD=1.03;ReadPosRankSum=-1.708;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:21,16:37:68:68,0,405 chrVII 7889 . T C 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.996;DP=40;Dels=0.00;FS=89.463;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=3;MQRankSum=-1.140;QD=2.40;ReadPosRankSum=-1.291;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:22,18:40:99:126,0,403 chrVII 7941 . T C 222.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.658;DP=47;Dels=0.00;FS=43.489;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=3;MQRankSum=-1.123;QD=4.72;ReadPosRankSum=1.476;SB=-2.402e+01 GT:AD:DP:GQ:PL 0/1:10,37:47:99:252,0,143 chrVII 7950 . A T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.663;DP=46;Dels=0.00;FS=38.194;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.90;MQ0=3;MQRankSum=1.455;QD=1.35;ReadPosRankSum=-2.050;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:37,9:46:92:92,0,264 chrVII 7989 . A G 189.05 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=33;Dels=0.00;FS=8.942;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=3;MQRankSum=-0.553;QD=5.73;ReadPosRankSum=-0.207;SB=-3.705e+01 GT:AD:DP:GQ:PL 0/1:6,27:33:17:219,0,17 chrVII 8004 . C T 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;DP=18;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=3;MQRankSum=-0.764;QD=7.00;ReadPosRankSum=-0.425;SB=-3.995e+01 GT:AD:DP:GQ:PL 0/1:5,13:18:29:156,0,29 chrVII 8012 . A T 127.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=3;QD=10.59;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:160,18,0 chrVII 8022 . G A 115.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=11;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=2;MQRankSum=-0.751;QD=10.50;ReadPosRankSum=0.751;SB=-2.640e+01 GT:AD:DP:GQ:PL 0/1:3,8:11:6:145,0,6 chrVII 8038 . T C 205.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=19;Dels=0.00;FS=19.417;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;MQRankSum=0.159;QD=10.80;ReadPosRankSum=2.283;SB=-6.319e+01 GT:AD:DP:GQ:PL 1/1:4,14:19:8:237,8,0 chrVII 8051 . A G 325.10 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;MQRankSum=0.347;QD=10.49;ReadPosRankSum=1.617;SB=-1.541e+02 GT:AD:DP:GQ:PL 1/1:2,29:31:19:358,19,0 chrVII 8089 . A G 559 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=2;QD=15.11;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:66:592,66,0 chrVII 8205 . A G 833 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=3;QD=19.83;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:866,99,0 chrVII 8216 . T C 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=48;Dels=0.00;FS=6.734;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=3;MQRankSum=-1.294;QD=19.35;ReadPosRankSum=2.341;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:962,111,0 chrVII 8353 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=2;QD=1.34;SB=-7.974e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:6:50,6,0 chrVII 8358 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=2;QD=1.84;SB=-7.474e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:6:57,6,0 chrVII 8360 . T C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=2;QD=1.41;SB=-7.674e+01 GT:AD:DP:GQ:PL 1/1:2,12:14:6:51,6,0 chrVII 8362 . A G 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=2;QD=1.84;SB=-7.974e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:57,6,0 chrVII 8369 . T G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.32;MQ0=2;QD=1.28;SB=-8.177e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:6:53,6,0 chrVII 8379 . T G 42.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=2;QD=2.26;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:2,17:19:9:75,9,0 chrVII 8380 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=2;QD=2.30;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:9:78,9,0 chrVII 8391 . A T 174.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=5.44;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:207,24,0 chrVII 8442 . T C 213.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=2;MQRankSum=-0.294;QD=5.33;ReadPosRankSum=0.098;SB=-2.292e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:8:245,8,0 chrVII 8467 . A G 202.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=49;Dels=0.00;FS=16.413;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=2;MQRankSum=-1.018;QD=4.12;ReadPosRankSum=-0.190;SB=-8.702e+01 GT:AD:DP:GQ:PL 0/1:6,43:49:40:232,0,40 chrVII 8471 . T C 221.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;DP=44;Dels=0.00;FS=18.700;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=2;MQRankSum=-1.348;QD=5.02;ReadPosRankSum=0.485;SB=-6.202e+01 GT:AD:DP:GQ:PL 0/1:7,37:44:39:251,0,39 chrVII 8477 . T C 145.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=43;Dels=0.00;FS=34.338;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=1;MQRankSum=-1.995;QD=3.37;ReadPosRankSum=0.090;SB=-1.402e+01 GT:AD:DP:GQ:PL 0/1:7,36:43:42:175,0,42 chrVII 8487 . C T 139.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DP=40;Dels=0.00;FS=33.241;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=0;MQRankSum=-1.875;QD=3.48;ReadPosRankSum=0.322;SB=-2.003e+01 GT:AD:DP:GQ:PL 0/1:6,34:40:24:169,0,24 chrVII 8488 . C T 133.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.858;DP=41;Dels=0.00;FS=39.166;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=0;MQRankSum=-1.542;QD=3.24;ReadPosRankSum=0.918;SB=-1.302e+01 GT:AD:DP:GQ:PL 0/1:7,34:41:72:163,0,72 chrVII 8496 . G A 193.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=48;Dels=0.00;FS=54.266;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=0;MQRankSum=-1.508;QD=4.02;ReadPosRankSum=0.761;SB=-1.002e+01 GT:AD:DP:GQ:PL 0/1:8,40:48:57:223,0,57 chrVII 8501 . C T 243.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;DP=50;Dels=0.00;FS=66.780;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=-2.583;QD=4.86;ReadPosRankSum=1.807;SB=-4.017e+00 GT:AD:DP:GQ:PL 0/1:10,40:50:99:273,0,103 chrVII 8517 . A G 278.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.617;DP=59;Dels=0.00;FS=97.312;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=1;MQRankSum=-4.028;QD=4.71;ReadPosRankSum=0.988;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,45:59:99:308,0,150 chrVII 8529 . A G 301.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;DP=62;Dels=0.00;FS=122.287;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.34;MQ0=1;MQRankSum=-3.898;QD=4.85;ReadPosRankSum=1.194;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,43:62:99:331,0,185 chrVII 8533 . T C 303.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.687;DP=61;Dels=0.00;FS=123.550;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.49;MQ0=1;MQRankSum=-4.275;QD=4.97;ReadPosRankSum=0.826;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,41:61:99:333,0,201 chrVII 8539 . G A 275.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.003;DP=58;Dels=0.00;FS=125.322;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=27.62;MQ0=1;MQRankSum=-2.712;QD=4.74;ReadPosRankSum=-0.776;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:18,40:58:99:305,0,189 chrVII 8547 . C T 252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DP=48;Dels=0.00;FS=107.658;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=2;MQRankSum=-3.186;QD=5.25;ReadPosRankSum=-0.592;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,29:48:99:282,0,177 chrVII 8553 . T C 239.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;DP=58;Dels=0.00;FS=127.359;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=2;MQRankSum=-2.675;QD=4.12;ReadPosRankSum=-1.939;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:20,38:58:99:269,0,219 chrVII 8560 . C T 274.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DP=57;Dels=0.00;FS=127.359;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=1;MQRankSum=-2.289;QD=4.81;ReadPosRankSum=-2.658;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,38:57:99:304,0,217 chrVII 8562 . T A 258.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DP=57;Dels=0.00;FS=127.359;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=1;MQRankSum=-2.904;QD=4.53;ReadPosRankSum=-2.851;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,38:57:99:288,0,226 chrVII 8574 . T A,G 515.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.50;MQ0=3;QD=9.54;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/2:0,33,21:54:99:575,292,253,283,0,247 chrVII 8579 . A C 224.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;DP=57;Dels=0.00;FS=133.739;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=3;MQRankSum=-2.280;QD=3.93;ReadPosRankSum=0.238;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,32:57:99:254,0,252 chrVII 8584 . A T 140.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=51;Dels=0.00;FS=120.062;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=3;MQRankSum=-1.624;QD=2.75;ReadPosRankSum=1.914;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,26:51:99:170,0,272 chrVII 8585 . T C 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=51;Dels=0.00;FS=120.062;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=3;MQRankSum=-0.962;QD=1.96;ReadPosRankSum=1.976;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:25,26:51:99:130,0,262 chrVII 8596 . A C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.282;DP=43;Dels=0.00;FS=96.928;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.85;MQ0=3;MQRankSum=-0.720;QD=0.93;ReadPosRankSum=1.319;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:21,22:43:70:70,0,259 chrVII 8825 . C T 231.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DP=55;Dels=0.00;FS=21.717;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.31;MQ0=0;MQRankSum=2.360;QD=4.20;ReadPosRankSum=1.641;SB=-7.112e+01 GT:AD:DP:GQ:PL 0/1:2,53:55:13:261,0,13 chrVII 8831 . C T 352 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=18.808;HaplotypeScore=45.3836;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=2.277;QD=6.18;ReadPosRankSum=2.364;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:42:385,42,0 chrVII 8835 . C T 415 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=49.5708;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=7.28;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:48:448,48,0 chrVII 8879 . T C 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;MQRankSum=-1.681;QD=9.75;ReadPosRankSum=1.681;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:78:706,78,0 chrVII 8880 . G C 695 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=10.07;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:81:728,81,0 chrVII 8937 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=15.86;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1429,162,0 chrVII 8957 . A G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-0.550;QD=15.99;ReadPosRankSum=1.691;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1392,168,0 chrVII 8975 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=15.85;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1269,150,0 chrVII 8977 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;MQRankSum=0.444;QD=15.53;ReadPosRankSum=1.688;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1244,150,0 chrVII 9029 . G T 1112 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=13.40;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1145,126,0 chrVII 9044 . T G 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=99;Dels=0.00;FS=2.935;HaplotypeScore=8.6761;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.295;QD=14.06;ReadPosRankSum=2.347;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,94:99:99:1425,165,0 chrVII 9188 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.72;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2270,246,0 chrVII 9253 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6794;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.46;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1322,147,0 chrVII 9430 . A G 2127 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.48;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2160,240,0 chrVII 9885 . T A 2111 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2144,231,0 chrVII 10029 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.31;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1719,189,0 chrVII 10063 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.40;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1808,192,0 chrVII 10093 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.67;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1725,189,0 chrVII 10166 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=23.14;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1630,174,0 chrVII 10242 . T A 2307 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.40;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2340,258,0 chrVII 10386 . T A,C 1006.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.485;DP=78;Dels=0.00;FS=5.921;HaplotypeScore=3.9434;MLEAC=1,1;MLEAF=0.500,0.500;MQ=35.85;MQ0=8;MQRankSum=-0.198;QD=12.90;ReadPosRankSum=1.683;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/2:1,30,47:78:99:1066,614,560,451,0,373 chrVII 10427 . C T 1124 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=7;QD=16.29;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1157,126,0 chrVII 10505 . T A 1398 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=18.64;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1431,150,0 chrVII 10527 . T A 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.568;DP=76;Dels=0.00;FS=22.953;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=2.186;QD=17.49;ReadPosRankSum=0.260;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:6,70:76:98:1362,98,0 chrVII 10569 . G A 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.034;DP=92;Dels=0.00;FS=13.331;HaplotypeScore=6.8169;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=2;MQRankSum=2.855;QD=18.18;ReadPosRankSum=-0.045;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:4,88:92:99:1706,183,0 chrVII 10661 . C A 1088.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DP=111;Dels=0.00;FS=2.260;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=44.28;MQ0=8;MQRankSum=0.868;QD=9.80;ReadPosRankSum=-0.601;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:29,81:111:99:1118,0,418 chrVII 10700 . G C 322.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DP=81;Dels=0.00;FS=0.903;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=34.49;MQ0=6;MQRankSum=-4.430;QD=3.98;ReadPosRankSum=-0.675;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:46,34:81:99:352,0,776 chrVII 10705 . G C 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DP=82;Dels=0.00;FS=2.011;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=34.03;MQ0=7;MQRankSum=-4.489;QD=3.83;ReadPosRankSum=-1.065;SB=-1.900e+02 GT:AD:DP:GQ:PL 0/1:44,34:82:99:344,0,800 chrVII 10804 . A C 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;DP=53;Dels=0.00;FS=1.146;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.09;MQ0=6;MQRankSum=-0.760;QD=4.25;ReadPosRankSum=-0.289;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:26,27:53:99:255,0,239 chrVII 10812 . C T 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=5;MQRankSum=-1.991;QD=4.06;ReadPosRankSum=-1.033;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:23,30:53:99:245,0,203 chrVII 10814 . T C 247.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.482;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=5;MQRankSum=-1.225;QD=4.66;ReadPosRankSum=-0.543;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:23,30:53:99:277,0,206 chrVII 10823 . T C 216.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=5;MQRankSum=-1.759;QD=4.50;ReadPosRankSum=0.892;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:20,27:48:99:246,0,169 chrVII 10827 . G A 230.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=5;MQRankSum=-0.842;QD=4.69;ReadPosRankSum=1.089;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:20,29:49:99:260,0,133 chrVII 10829 . C G 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=5;MQRankSum=-1.609;QD=4.37;ReadPosRankSum=1.461;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:20,29:49:99:244,0,148 chrVII 10840 . A G 396.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;DP=53;Dels=0.00;FS=1.380;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=3;MQRankSum=1.077;QD=7.47;ReadPosRankSum=0.304;SB=-3.050e+02 GT:AD:DP:GQ:PL 0/1:14,39:53:31:426,0,31 chrVII 10843 . T G 402.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.679;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=2;MQRankSum=0.452;QD=7.88;ReadPosRankSum=-0.426;SB=-3.249e+02 GT:AD:DP:GQ:PL 0/1:11,40:51:45:432,0,45 chrVII 10851 . A G 410.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=2;MQRankSum=0.468;QD=8.73;ReadPosRankSum=2.171;SB=-2.531e+02 GT:AD:DP:GQ:PL 0/1:11,36:47:13:440,0,13 chrVII 10852 . A C 428.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=2;MQRankSum=0.928;QD=9.31;ReadPosRankSum=1.993;SB=-2.615e+02 GT:AD:DP:GQ:PL 1/1:10,36:46:7:460,7,0 chrVII 10855 . A T 486.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.450;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.1056;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=1;MQRankSum=0.654;QD=10.81;ReadPosRankSum=2.510;SB=-2.785e+02 GT:AD:DP:GQ:PL 1/1:9,36:45:7:518,7,0 chrVII 10856 . T C 444.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=45;Dels=0.00;FS=1.827;HaplotypeScore=5.8942;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=1;MQRankSum=0.709;QD=9.88;ReadPosRankSum=2.059;SB=-2.378e+02 GT:AD:DP:GQ:PL 1/1:8,35:45:10:477,10,0 chrVII 10867 . A C 490 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.769;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=2;MQRankSum=2.327;QD=11.67;ReadPosRankSum=0.217;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:3,39:42:60:523,60,0 chrVII 10875 . T C 415 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.955;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=1;MQRankSum=2.203;QD=10.12;ReadPosRankSum=0.900;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:51:448,51,0 chrVII 10877 . C G 295 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.148;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.4098;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=1;MQRankSum=2.203;QD=7.20;ReadPosRankSum=1.272;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:39:328,39,0 chrVII 10975 . T A 699.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DP=100;Dels=0.00;FS=38.391;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.85;MQ0=1;MQRankSum=-2.554;QD=6.99;ReadPosRankSum=0.886;SB=-5.870e+02 GT:AD:DP:GQ:PL 0/1:13,87:100:41:729,0,41 chrVII 10982 . A T 777.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;DP=99;Dels=0.00;FS=46.838;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.33;MQ0=0;MQRankSum=-2.664;QD=7.85;ReadPosRankSum=-0.016;SB=-5.040e+02 GT:AD:DP:GQ:PL 0/1:12,87:99:76:807,0,76 chrVII 10996 . C T 803.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.397;DP=105;Dels=0.01;FS=59.693;HaplotypeScore=3.5305;MLEAC=1;MLEAF=0.500;MQ=35.02;MQ0=0;MQRankSum=-3.233;QD=7.65;ReadPosRankSum=-0.776;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:12,91:104:77:833,0,77 chrVII 11005 . A G 738.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.624;DP=106;Dels=0.00;FS=64.507;HaplotypeScore=4.5607;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=2;MQRankSum=-2.864;QD=6.96;ReadPosRankSum=-1.328;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:12,94:106:99:768,0,112 chrVII 11008 . G A 694.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.536;DP=107;Dels=0.00;FS=69.544;HaplotypeScore=4.3828;MLEAC=1;MLEAF=0.500;MQ=33.19;MQ0=2;MQRankSum=-3.588;QD=6.49;ReadPosRankSum=-0.786;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:13,93:107:99:724,0,119 chrVII 11034 . A G 874.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;DP=117;Dels=0.02;FS=141.472;HaplotypeScore=6.3803;MLEAC=1;MLEAF=0.500;MQ=32.07;MQ0=2;MQRankSum=-3.401;QD=7.47;ReadPosRankSum=0.993;SB=-7.102e+01 GT:AD:DP:GQ:PL 0/1:18,97:115:99:904,0,162 chrVII 11076 . A G 763.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.793;DP=89;Dels=0.00;FS=127.650;HaplotypeScore=68.2282;MLEAC=1;MLEAF=0.500;MQ=34.34;MQ0=2;MQRankSum=-0.137;QD=8.57;ReadPosRankSum=-1.605;SB=-5.602e+01 GT:AD:DP:GQ:PL 0/1:16,73:89:99:793,0,194 chrVII 11102 . A G 731.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;DP=78;Dels=0.00;FS=78.669;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=36.78;MQ0=1;MQRankSum=1.951;QD=9.37;ReadPosRankSum=0.075;SB=-2.120e+02 GT:AD:DP:GQ:PL 0/1:14,64:78:99:761,0,131 chrVII 11108 . C T 647.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.444;DP=73;Dels=0.00;FS=56.709;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=1;MQRankSum=1.669;QD=8.86;ReadPosRankSum=0.106;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:11,62:73:58:677,0,58 chrVII 11164 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=4.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=2;MQRankSum=1.471;QD=20.82;ReadPosRankSum=1.667;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1178,132,0 chrVII 11635 . G A 822 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:855,90,0 chrVII 12020 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.48;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1489,168,0 chrVII 12247 . G A 957 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.34;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:990,108,0 chrVII 12326 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.85;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1305,141,0 chrVII 12355 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.57;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1473,162,0 chrVII 12415 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.64;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1526,174,0 chrVII 13652 . A G 1751 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.67;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1784,204,0 chrVII 13749 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2326,264,0 chrVII 15337 . A G 2925 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.79;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2958,327,0 chrVII 16561 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.46;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1233,138,0 chrVII 16563 . A G 1145 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.17;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1178,132,0 chrVII 17085 . T A 1059 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=25.83;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1092,114,0 chrVII 17234 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.50;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1383,156,0 chrVII 17240 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.21;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1472,156,0 chrVII 17261 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.00;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1173,126,0 chrVII 17690 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.56;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1801,201,0 chrVII 17724 . C A 2013 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.62;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2046,219,0 chrVII 17750 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.83;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1470,159,0 chrVII 17785 . G C 1624 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=17.7190;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.85;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1657,186,0 chrVII 17818 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.11;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1783,198,0 chrVII 17862 . T A 1476 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.42;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1509,168,0 chrVII 17874 . T G 1357 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.56;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1390,159,0 chrVII 17897 . A T 1094 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.93;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1127,126,0 chrVII 17959 . C G 1164 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.38;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1197,135,0 chrVII 18271 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=16.53;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:843,90,0 chrVII 18426 . A T 71.51 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=2.31;SB=-2.985e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:12:104,12,0 chrVII 19051 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8439;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.47;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1708,186,0 chrVII 19127 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1538,168,0 chrVII 19206 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.28;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2172,231,0 chrVII 19266 . A G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.7759;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.425;QD=21.48;ReadPosRankSum=2.391;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1837,204,0 chrVII 19402 . A G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=71;Dels=0.00;FS=5.389;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.087;QD=20.44;ReadPosRankSum=3.329;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1484,168,0 chrVII 19710 . C A 1352 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.48;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1385,150,0 chrVII 19740 . T C 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=0.447;QD=15.52;ReadPosRankSum=1.621;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:995,114,0 chrVII 19775 . T C 477 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=11.92;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:510,57,0 chrVII 19776 . T C 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;MQRankSum=-0.549;QD=11.93;ReadPosRankSum=1.648;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:57:522,57,0 chrVII 19796 . C G 520 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.83;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:553,63,0 chrVII 19798 . G T 529 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.02;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:562,60,0 chrVII 19801 . T A 554 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.08;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:587,63,0 chrVII 19808 . G A 537 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.43;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:570,63,0 chrVII 19826 . A G 548 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.18;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:581,66,0 chrVII 19841 . A G 622 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.96;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:655,75,0 chrVII 19850 . A T 602 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=11.36;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:66:635,66,0 chrVII 19879 . G A 614 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=12.79;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:69:647,69,0 chrVII 19883 . A G 607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=3.035;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;MQRankSum=-0.421;QD=12.14;ReadPosRankSum=2.352;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:72:640,72,0 chrVII 19896 . A G 599 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=11.75;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:72:632,72,0 chrVII 19914 . G A 722 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=13.62;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:755,81,0 chrVII 19961 . G A 748 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.85;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:781,84,0 chrVII 19992 . T C 615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=-1.732;QD=12.30;ReadPosRankSum=1.663;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:75:648,75,0 chrVII 20011 . T C 471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=62;Dels=0.00;FS=3.040;HaplotypeScore=39.0329;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=-0.927;QD=7.60;ReadPosRankSum=1.297;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:60:504,60,0 chrVII 20016 . T C 249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=39.3106;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=-0.694;QD=4.15;ReadPosRankSum=1.561;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:1,19:60:33:282,33,0 chrVII 20193 . G C 1975 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=20.79;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2008,225,0 chrVII 20238 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=22.58;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1681,180,0 chrVII 20257 . G A 1063 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=16.11;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1096,123,0 chrVII 20428 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.29;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1989,222,0 chrVII 20512 . A G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-0.241;QD=18.14;ReadPosRankSum=1.684;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1375,156,0 chrVII 20521 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=17.84;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1353,153,0 chrVII 20576 . T A 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=7.289;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.254;QD=16.51;ReadPosRankSum=1.686;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1271,138,0 chrVII 20580 . T A 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=77;Dels=0.04;FS=6.931;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=0.281;QD=14.74;ReadPosRankSum=1.685;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1168,126,0 chrVII 20692 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.59;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1249,144,0 chrVII 20726 . T G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.286;QD=16.57;ReadPosRankSum=1.694;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1541,171,0 chrVII 20736 . T C 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=2.415;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.310;QD=15.72;ReadPosRankSum=1.050;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1621,183,0 chrVII 20785 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.76;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1930,213,0 chrVII 20917 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.578;DP=42;Dels=0.00;FS=10.414;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;MQRankSum=0.726;QD=0.42;ReadPosRankSum=-2.428;SB=-3.764e+00 GT:AD:DP:GQ:PL 1/1:38,3:42:6:49,6,0 chrVII 20920 . A T 50.97 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=1.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:41:9:83,9,0 chrVII 20931 . G A 500 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=11.63;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:533,57,0 chrVII 20940 . G A 431 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=11.65;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:464,51,0 chrVII 20941 . A G 418 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=11.00;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:51:451,51,0 chrVII 20962 . T C 471 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=11.77;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:504,57,0 chrVII 20973 . G T 553 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=11.29;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:586,66,0 chrVII 21035 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=16.48;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1137,126,0 chrVII 21041 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=3.183;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=-1.687;QD=15.73;ReadPosRankSum=1.597;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1260,147,0 chrVII 21167 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=20.34;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1925,219,0 chrVII 21172 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=20.21;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1933,216,0 chrVII 21218 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8407;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=16.55;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1721,198,0 chrVII 21225 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=0;MQRankSum=-1.125;QD=15.55;ReadPosRankSum=1.696;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:1572,183,0 chrVII 21241 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=13.73;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1145,132,0 chrVII 21253 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=14.47;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1263,144,0 chrVII 21328 . A G 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=5.891;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.365;QD=18.80;ReadPosRankSum=1.680;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1274,150,0 chrVII 21349 . T C 665 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=51;Dels=0.00;FS=2.653;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=-0.781;QD=13.04;ReadPosRankSum=2.782;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:84:698,84,0 chrVII 21350 . C A 702 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=14.04;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:735,87,0 chrVII 21352 . T C 689 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=12.30;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:90:722,90,0 chrVII 21409 . T C 1211 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.53;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1244,141,0 chrVII 21410 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=16.18;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1295,144,0 chrVII 21472 . A C 618 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=8.47;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:75:651,75,0 chrVII 21492 . G A 732 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=10.93;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:765,84,0 chrVII 21493 . A T 698 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=10.42;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:731,84,0 chrVII 21497 . A G 712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-1.732;QD=9.62;ReadPosRankSum=1.685;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:87:745,87,0 chrVII 21504 . C T 745 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=10.07;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:87:778,87,0 chrVII 21513 . G C 823 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;QD=10.83;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:856,99,0 chrVII 21523 . C G 852 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=11.21;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:885,102,0 chrVII 21534 . G C 936 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=12.82;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:969,114,0 chrVII 21569 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=15.75;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1671,183,0 chrVII 21676 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=14.24;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1471,162,0 chrVII 21694 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=11.21;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1053,117,0 chrVII 21704 . G A 889 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=10.22;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:922,108,0 chrVII 21705 . T C 871 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=10.01;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:904,105,0 chrVII 21710 . G A 794 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;QD=9.13;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:96:827,96,0 chrVII 21712 . T A 817 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=9.39;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:96:850,96,0 chrVII 21719 . T G 712 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.329;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;MQRankSum=1.237;QD=8.48;ReadPosRankSum=0.784;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:87:745,87,0 chrVII 21722 . T A 714 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;MQRankSum=-1.605;QD=8.50;ReadPosRankSum=1.690;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:84:747,84,0 chrVII 21868 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=18.06;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1225,141,0 chrVII 21919 . G C 849 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=11.96;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:882,99,0 chrVII 21926 . A G 647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;MQRankSum=0.299;QD=10.44;ReadPosRankSum=2.371;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:78:680,78,0 chrVII 22037 . G C 970 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.44;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1003,114,0 chrVII 22040 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=17.36;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:988,111,0 chrVII 22192 . G A 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.443;QD=15.20;ReadPosRankSum=-0.784;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1355,128,0 chrVII 22195 . A T 1352 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=14.23;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1385,150,0 chrVII 22900 . A T 3426.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=147;Dels=0.00;FS=5.441;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=0.295;QD=23.31;ReadPosRankSum=1.709;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3426,378,0 chrVII 23143 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.86;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2141,240,0 chrVII 23215 . G T 2553 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.77;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2586,285,0 chrVII 23602 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4667;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.91;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1073,120,0 chrVII 24468 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.340;QD=22.03;ReadPosRankSum=1.634;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2412,276,0 chrVII 25442 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.16;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1468,156,0 chrVII 25606 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.95;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2515,276,0 chrVII 27002 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.120;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.650;QD=19.12;ReadPosRankSum=0.996;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1582,164,0 chrVII 28288 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.36;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1336,153,0 chrVII 28634 . T G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.789;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.060;QD=18.59;ReadPosRankSum=1.629;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1297,147,0 chrVII 28799 . C G 1183 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.20;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1216,135,0 chrVII 28932 . T G 1099 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5872;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.63;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1132,132,0 chrVII 29398 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.3863;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.08;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1674,180,0 chrVII 29745 . A T 2027 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.57;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2060,225,0 chrVII 30045 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.36;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1043,111,0 chrVII 30120 . A T 1369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.84;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1402,153,0 chrVII 30150 . A T 1021 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.02;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1054,117,0 chrVII 30161 . C A 1128 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.14;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1161,123,0 chrVII 30324 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.490;QD=22.51;ReadPosRankSum=1.667;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1226,138,0 chrVII 30348 . C G 1095 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.35;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1128,126,0 chrVII 30426 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1083,123,0 chrVII 30743 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.89;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1525,171,0 chrVII 31305 . T A 1506 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1539,174,0 chrVII 31899 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.764;QD=22.25;ReadPosRankSum=2.410;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2792,324,0 chrVII 32037 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.53;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1283,135,0 chrVII 32613 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=5.0588;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.02;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1252,141,0 chrVII 32862 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.57;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1658,180,0 chrVII 32898 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.92;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1414,162,0 chrVII 33274 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.28;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1247,135,0 chrVII 33441 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.36;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1575,168,0 chrVII 33654 . G A 1322 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.66;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1355,144,0 chrVII 33807 . G C 1019 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.98;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1052,120,0 chrVII 33815 . A C 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=6.829;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.752;QD=18.11;ReadPosRankSum=-0.229;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1011,114,0 chrVII 34019 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.67;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1661,180,0 chrVII 34081 . T C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.733;QD=23.88;ReadPosRankSum=1.648;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:1012,114,0 chrVII 34292 . C G 1356 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.19;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1389,159,0 chrVII 34297 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.13;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1449,165,0 chrVII 34427 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.00;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1587,168,0 chrVII 34555 . C G 2015 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.35;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2048,234,0 chrVII 34666 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.436;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.039;QD=20.95;ReadPosRankSum=1.686;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1604,183,0 chrVII 34691 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.68;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1312,147,0 chrVII 34702 . C A 1230 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.52;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1263,135,0 chrVII 34805 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.75;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1189,129,0 chrVII 34992 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.32;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1568,165,0 chrVII 35217 . A G 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=4.424;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.348;QD=19.56;ReadPosRankSum=1.540;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:84:737,84,0 chrVII 35451 . C G 987 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.93;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1020,114,0 chrVII 35543 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.657;QD=19.83;ReadPosRankSum=1.657;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:945,105,0 chrVII 35796 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.38;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1423,156,0 chrVII 35877 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=14.78;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:49:87:757,87,0 chrVII 35919 . A T 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.281;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;QD=22.58;ReadPosRankSum=1.681;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1546,165,0 chrVII 35993 . C G 1562 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.83;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1595,183,0 chrVII 36018 . C G 1570 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.66;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1603,183,0 chrVII 36550 . T C 2045 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.8702;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.10;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2078,234,0 chrVII 36691 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.15;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1910,213,0 chrVII 36711 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.79;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1715,192,0 chrVII 36979 . A C 1328 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4642;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.08;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1361,153,0 chrVII 37058 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.29;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1481,162,0 chrVII 37198 . A C 2623 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.01;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2656,297,0 chrVII 37283 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.60;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1874,207,0 chrVII 37436 . A C 1792 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1694;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.85;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1825,207,0 chrVII 37569 . T A 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.650;QD=20.95;ReadPosRankSum=1.696;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2044,216,0 chrVII 37581 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.20;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1799,207,0 chrVII 37655 . A T 1421 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.70;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1454,153,0 chrVII 38036 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1915,207,0 chrVII 38202 . A G 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=3.259;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.107;QD=19.07;ReadPosRankSum=1.684;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1425,159,0 chrVII 38265 . T C 1153 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.88;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1186,135,0 chrVII 38508 . T C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=72;Dels=0.00;FS=5.449;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.280;QD=19.58;ReadPosRankSum=2.781;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:3,66:72:99:1443,162,0 chrVII 38616 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1375,147,0 chrVII 38736 . T C 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.256;QD=23.39;ReadPosRankSum=1.675;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1460,165,0 chrVII 38813 . A T 1347 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.45;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1380,147,0 chrVII 38837 . A T 1466 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.79;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1499,162,0 chrVII 38848 . T A 1449 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.89;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1482,165,0 chrVII 38993 . A G 2504 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.19;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2537,282,0 chrVII 39412 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.65;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2408,264,0 chrVII 39454 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.89;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1976,225,0 chrVII 39493 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.58;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1724,192,0 chrVII 39549 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9047;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.67;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1983,213,0 chrVII 39607 . A T 1911 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8842;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.97;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1944,210,0 chrVII 39634 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.01;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1777,198,0 chrVII 39784 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=15.7422;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.40;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1542,171,0 chrVII 39847 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.17;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2234,246,0 chrVII 39953 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.86;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1466,165,0 chrVII 39973 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=18.08;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1190,135,0 chrVII 39988 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.57;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1143,120,0 chrVII 39991 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3999;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=15.83;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1078,117,0 chrVII 40408 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=8.823;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.967;QD=18.84;ReadPosRankSum=2.344;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1785,201,0 chrVII 40507 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.95;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1492,162,0 chrVII 40984 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.64;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1643,189,0 chrVII 41032 . C T 1251 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.14;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1284,135,0 chrVII 41035 . A G 1187 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.336;QD=17.72;ReadPosRankSum=1.681;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1220,135,0 chrVII 41041 . A G 1115 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=15.93;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1148,126,0 chrVII 41174 . A G 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.922;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.477;QD=19.59;ReadPosRankSum=2.361;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2207,258,0 chrVII 41253 . G C 1820 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.38;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1853,210,0 chrVII 41255 . G T 1924 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.63;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1957,213,0 chrVII 41301 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.23;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1619,174,0 chrVII 41417 . A C 1412 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.89;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1445,165,0 chrVII 41439 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.43;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1762,195,0 chrVII 41491 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.97;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2151,243,0 chrVII 42016 . A G 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=90;Dels=0.00;FS=3.033;HaplotypeScore=6.8899;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.235;QD=21.98;ReadPosRankSum=2.339;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2011,222,0 chrVII 42650 . A C 1195 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.59;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1228,141,0 chrVII 42721 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1165,129,0 chrVII 42910 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.94;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1110,129,0 chrVII 43204 . A T 489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.1738;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.284;QD=14.38;ReadPosRankSum=2.787;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:3,31:34:57:522,57,0 chrVII 43308 . T G 1515 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.20;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1548,174,0 chrVII 43336 . C A 1159 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.32;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1192,126,0 chrVII 43400 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.44;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1158,129,0 chrVII 43798 . C T 1316 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.28;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1349,144,0 chrVII 44099 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.31;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1974,216,0 chrVII 44898 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.46;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1707,183,0 chrVII 45353 . G A 650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=8.8592;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=3.331;QD=8.23;ReadPosRankSum=0.492;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:8,70:78:72:683,72,0 chrVII 45371 . C T 785 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=7.2101;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=8.92;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:96:818,96,0 chrVII 45399 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.73;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1730,189,0 chrVII 45537 . C A 1696 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1729,183,0 chrVII 45669 . A T 2057 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.60;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2090,228,0 chrVII 45694 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.87;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1995,228,0 chrVII 45723 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2536;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.75;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1889,204,0 chrVII 45813 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.2462;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.22;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2791,312,0 chrVII 46050 . A G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.591;QD=19.40;ReadPosRankSum=2.349;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1449,159,0 chrVII 46197 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.66;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1993,222,0 chrVII 46424 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.07;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1440,156,0 chrVII 46524 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=4.881;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.386;QD=21.65;ReadPosRankSum=1.689;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1765,204,0 chrVII 46545 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.58;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1587,180,0 chrVII 46634 . A G 945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=54;Dels=0.00;FS=6.438;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.389;QD=17.50;ReadPosRankSum=2.359;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:978,108,0 chrVII 46743 . A G 2636 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.43;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2669,306,0 chrVII 46860 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.038;QD=21.51;ReadPosRankSum=1.694;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1990,228,0 chrVII 47220 . A T 1553 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1586,168,0 chrVII 47302 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7636;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.11;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1638,189,0 chrVII 47968 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.869;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.977;QD=21.90;ReadPosRankSum=1.688;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1763,201,0 chrVII 47998 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=3.136;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.287;QD=19.44;ReadPosRankSum=1.683;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1413,159,0 chrVII 48338 . T C 942 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=17.77;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:975,108,0 chrVII 48835 . A T 2432 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.38;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2465,267,0 chrVII 49026 . A T 2856 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=20.0347;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.60;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2889,309,0 chrVII 49323 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1563;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.37;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1527,162,0 chrVII 49965 . G T 1517 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.31;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1550,171,0 chrVII 50143 . T A 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.889;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.220;QD=22.17;ReadPosRankSum=1.635;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1629,174,0 chrVII 50656 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1397,150,0 chrVII 50865 . T C 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.314;QD=21.87;ReadPosRankSum=2.367;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:2,57:62:99:1389,156,0 chrVII 51252 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.27;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1499,168,0 chrVII 51531 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3476;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.27;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1859,213,0 chrVII 51615 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.41;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1235,141,0 chrVII 52204 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.37;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2069,231,0 chrVII 52569 . T C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.355;QD=22.13;ReadPosRankSum=1.690;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1870,210,0 chrVII 52587 . A G 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.226;QD=21.98;ReadPosRankSum=1.693;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1989,225,0 chrVII 53079 . A T 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.539;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.666;QD=22.60;ReadPosRankSum=1.694;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2090,225,0 chrVII 53097 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.17;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1682,186,0 chrVII 53419 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.985;QD=19.81;ReadPosRankSum=1.562;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2073,240,0 chrVII 53606 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.66;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2730,294,0 chrVII 54197 . A G 2209 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.38;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2242,252,0 chrVII 54246 . T G 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.522;QD=19.48;ReadPosRankSum=1.347;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1280,147,0 chrVII 54306 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.60;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1394,147,0 chrVII 54455 . C G 2233 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.56;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2266,255,0 chrVII 54618 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.75;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1423,159,0 chrVII 54732 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.67;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1639,186,0 chrVII 54879 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.2526;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.69;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,102:110:99:2089,231,0 chrVII 55015 . G T 1852 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.4954;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.81;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1885,204,0 chrVII 55107 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.7128;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.06;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1901,201,0 chrVII 55263 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.44;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2263,249,0 chrVII 55494 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.60;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1758,195,0 chrVII 55850 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2507;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=14.13;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1135,120,0 chrVII 55852 . T G 1039 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=8.9365;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=13.67;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1072,123,0 chrVII 55893 . A C 627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-1.039;QD=13.93;ReadPosRankSum=1.655;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:75:660,75,0 chrVII 55935 . C G 581 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=10.76;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:614,69,0 chrVII 55945 . A C 453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.152;QD=7.81;ReadPosRankSum=1.550;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:57:486,57,0 chrVII 56224 . G A 429 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=21.9104;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=10.46;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,35:41:51:462,51,0 chrVII 57465 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.132;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.033;QD=20.11;ReadPosRankSum=1.669;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2225,255,0 chrVII 57786 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.99;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2212,240,0 chrVII 57855 . T C 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=114;Dels=0.00;FS=6.864;HaplotypeScore=6.7155;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.414;QD=21.16;ReadPosRankSum=2.407;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2445,276,0 chrVII 58068 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4293;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.400;QD=23.28;ReadPosRankSum=1.694;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2175,243,0 chrVII 58440 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.46;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1465,171,0 chrVII 59068 . A T 1493 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.08;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1526,165,0 chrVII 59379 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.88;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1067,120,0 chrVII 59721 . T C 593 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.45;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:69:626,69,0 chrVII 59754 . T C 786 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.15;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:819,93,0 chrVII 59802 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.40;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:929,105,0 chrVII 60011 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.59;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1042,117,0 chrVII 60093 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1176,126,0 chrVII 60240 . C A 969 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.02;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1002,108,0 chrVII 60270 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.59;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:993,108,0 chrVII 60280 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.30;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1048,111,0 chrVII 60660 . A G 973 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.70;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1006,117,0 chrVII 60719 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.12;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1212,129,0 chrVII 60729 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.80;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1156,132,0 chrVII 61140 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.54;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1471,165,0 chrVII 61349 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.15;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1806,195,0 chrVII 61756 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.124;QD=20.34;ReadPosRankSum=1.685;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1538,174,0 chrVII 61936 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=22.26;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1636,180,0 chrVII 62160 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.83;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1190,135,0 chrVII 62447 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.54;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1963,210,0 chrVII 62492 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.22;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1433,162,0 chrVII 62921 . A G 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.237;QD=18.83;ReadPosRankSum=1.677;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1219,138,0 chrVII 63511 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.50;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1550,171,0 chrVII 64023 . T C 1238 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.27;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1271,141,0 chrVII 64303 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.29;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1152,123,0 chrVII 64305 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.81;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1084,123,0 chrVII 65202 . A C 764 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.6559;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:797,90,0 chrVII 65504 . T C 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.526;QD=22.95;ReadPosRankSum=2.390;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1915,216,0 chrVII 65688 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.17;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2073,222,0 chrVII 65790 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.468;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.130;QD=21.54;ReadPosRankSum=1.689;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1778,201,0 chrVII 65798 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.94;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1788,198,0 chrVII 66126 . T G 1565 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.74;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1598,183,0 chrVII 66390 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.95;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1341,153,0 chrVII 66605 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.42;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2328,249,0 chrVII 66712 . G C 1263 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.85;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1296,144,0 chrVII 67009 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.31;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2061,219,0 chrVII 67253 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.23;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1052,120,0 chrVII 67463 . A G 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=8.612;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-2.234;QD=14.84;ReadPosRankSum=2.327;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1235,147,0 chrVII 67464 . A T 1246 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=16.18;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1279,147,0 chrVII 67624 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.70;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1482,171,0 chrVII 68009 . T A 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=14.2076;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.691;QD=19.70;ReadPosRankSum=0.713;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1786,195,0 chrVII 68067 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.37;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2086,240,0 chrVII 68076 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.376;QD=19.46;ReadPosRankSum=2.368;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2388,270,0 chrVII 68203 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.161;QD=21.27;ReadPosRankSum=1.694;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1969,222,0 chrVII 68211 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8863;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.40;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1910,207,0 chrVII 68385 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.32;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1993,210,0 chrVII 68482 . G A 3290.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.85;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3290,351,0 chrVII 68542 . T C 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=131;Dels=0.00;FS=3.538;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.415;QD=20.09;ReadPosRankSum=1.706;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2665,303,0 chrVII 68806 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.68;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1832,210,0 chrVII 68875 . A G 1967 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6194;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.38;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2000,228,0 chrVII 69214 . A T 1017 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.34;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1050,114,0 chrVII 69249 . G T 948 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.96;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:981,111,0 chrVII 69315 . T C 334 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=11.52;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:42:367,42,0 chrVII 70353 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8996;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.24;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2804,291,0 chrVII 71410 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.28;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1942,207,0 chrVII 72406 . A G 2645 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.83;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2678,300,0 chrVII 72734 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.24;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2369,252,0 chrVII 72738 . A G 2206 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.81;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2239,252,0 chrVII 72788 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=13.90;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1340,153,0 chrVII 72874 . C T 2487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.226;HaplotypeScore=8.0694;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.026;QD=23.69;ReadPosRankSum=-1.429;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2520,273,0 chrVII 73077 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.59;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2429,264,0 chrVII 73493 . C G 1737 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.88;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1770,198,0 chrVII 73615 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.386;QD=17.25;ReadPosRankSum=2.901;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:99:1275,141,0 chrVII 73684 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.08;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1521,171,0 chrVII 74047 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=15.52;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1011,108,0 chrVII 74322 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.660;QD=22.99;ReadPosRankSum=1.608;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1964,219,0 chrVII 74365 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.65;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1389,156,0 chrVII 74414 . G A 602 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=14.00;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:635,72,0 chrVII 74420 . T C 706 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=14.71;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:739,84,0 chrVII 74423 . G T 662 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=14.09;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:695,78,0 chrVII 74453 . T G 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-1.173;QD=15.13;ReadPosRankSum=1.621;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:971,108,0 chrVII 74547 . A G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.732;QD=16.22;ReadPosRankSum=1.677;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1071,123,0 chrVII 74670 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.83;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1791,207,0 chrVII 74769 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1313;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.90;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1872,201,0 chrVII 74942 . T G 2632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.696;QD=22.50;ReadPosRankSum=1.673;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2665,303,0 chrVII 74983 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.40;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2430,285,0 chrVII 75107 . G A 3563.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=12.8976;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.99;SB=-1.833e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3563,381,0 chrVII 75209 . T C 3467.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.01;SB=-1.984e+03 GT:AD:DP:GQ:PL 1/1:0,162:165:99:3467,390,0 chrVII 75494 . G T 474 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=3.22;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:57:507,57,0 chrVII 75619 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.2350;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.27;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2309,243,0 chrVII 75625 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.323;DP=111;Dels=0.00;FS=13.530;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.147;QD=17.32;ReadPosRankSum=4.359;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:7,103:111:99:1956,222,0 chrVII 75663 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=5.549;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-0.114;QD=16.93;ReadPosRankSum=1.704;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2115,240,0 chrVII 75728 . G T 2118 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.95;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2151,234,0 chrVII 75752 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.16;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2075,231,0 chrVII 75778 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.213;DP=122;Dels=0.00;FS=8.690;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=2.437;QD=17.71;ReadPosRankSum=3.371;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:4,118:122:99:2194,246,0 chrVII 76021 . A T 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=9.229;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.659;QD=22.07;ReadPosRankSum=2.359;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2461,267,0 chrVII 76149 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.85;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2889,303,0 chrVII 76241 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.470;QD=17.09;ReadPosRankSum=1.678;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2238,258,0 chrVII 76247 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.501;QD=16.49;ReadPosRankSum=1.503;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2028,222,0 chrVII 76466 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.70;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2279,243,0 chrVII 76488 . T C 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=5.027;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.346;QD=16.97;ReadPosRankSum=1.699;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1832,207,0 chrVII 76490 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.80;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1920,216,0 chrVII 76512 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.89;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1823,195,0 chrVII 76663 . G C 826 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=13.54;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:859,99,0 chrVII 76672 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=14.41;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:955,102,0 chrVII 76882 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.58;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1794,204,0 chrVII 76989 . T C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.742;QD=20.00;ReadPosRankSum=1.670;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1153,129,0 chrVII 77983 . T C 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;MQRankSum=-0.630;QD=18.23;ReadPosRankSum=1.701;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2038,228,0 chrVII 78029 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.62;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2520,279,0 chrVII 78859 . A G 476 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.86;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:57:509,57,0 chrVII 78970 . T C 896 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:929,105,0 chrVII 78986 . A C 756 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:93:789,93,0 chrVII 79037 . T C 450 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.342;QD=16.67;ReadPosRankSum=2.268;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,25:27:57:483,57,0 chrVII 79107 . T C 1581 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1614,183,0 chrVII 79268 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.96;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1175,135,0 chrVII 79504 . T G 2862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.977;QD=21.36;ReadPosRankSum=1.680;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2895,330,0 chrVII 79586 . C A 2002 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1535;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.53;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2035,225,0 chrVII 79697 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.38;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2018,222,0 chrVII 79718 . G A 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8979;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.251;QD=20.08;ReadPosRankSum=1.117;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2523,273,0 chrVII 79796 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.67;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2393,270,0 chrVII 79943 . A G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.155;QD=21.98;ReadPosRankSum=1.675;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1352,153,0 chrVII 80096 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=17.57;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1087,117,0 chrVII 80122 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.41;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1081,120,0 chrVII 80305 . A G 930 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.98;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:963,108,0 chrVII 80345 . C T 636 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=16.74;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:669,75,0 chrVII 80603 . A G 143.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.733;DP=27;Dels=0.00;FS=4.887;HaplotypeScore=7.1146;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=1;MQRankSum=1.659;QD=5.30;ReadPosRankSum=1.967;SB=-7.481e+01 GT:AD:DP:GQ:PL 1/1:15,12:27:21:176,21,0 chrVII 80653 . G A 94.26 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=2.86;SB=-8.327e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:15:127,15,0 chrVII 80875 . C A 1230 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.10;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1263,135,0 chrVII 80909 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.18;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1519,174,0 chrVII 81094 . T C 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1594;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.326;QD=18.53;ReadPosRankSum=1.456;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1367,156,0 chrVII 81306 . T A 1831 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.27;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1864,204,0 chrVII 81825 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4700;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.17;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2352,255,0 chrVII 82159 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.59;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1669,183,0 chrVII 82287 . G A 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.443;QD=17.51;ReadPosRankSum=0.819;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2344,255,0 chrVII 82621 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1088,117,0 chrVII 82858 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=3.188;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.490;QD=21.17;ReadPosRankSum=1.697;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2171,246,0 chrVII 83613 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.216;QD=16.90;ReadPosRankSum=1.695;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1655,192,0 chrVII 83793 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.19;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1830,207,0 chrVII 83832 . C A 1782 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.21;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1815,198,0 chrVII 84066 . C G 1821 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.69;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1854,204,0 chrVII 84425 . T G 1266 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.10;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1299,147,0 chrVII 84476 . C T 670 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.14;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:75:703,75,0 chrVII 84582 . G C 488 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=14.79;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:521,60,0 chrVII 84714 . T A 718 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:78:751,78,0 chrVII 84785 . A G 307 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=14.62;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:21:39:340,39,0 chrVII 84969 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.54;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1163,123,0 chrVII 85190 . A C 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.685;DP=74;Dels=0.00;FS=3.252;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.094;QD=18.84;ReadPosRankSum=1.170;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1427,139,0 chrVII 85337 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0917;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.60;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1476,162,0 chrVII 85539 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2099,228,0 chrVII 85628 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.7323;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.85;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2967,321,0 chrVII 85718 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.48;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2191,234,0 chrVII 86297 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.47;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2223,240,0 chrVII 86321 . T G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.554;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.392;QD=19.88;ReadPosRankSum=1.698;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2061,237,0 chrVII 86720 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.33;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1497,165,0 chrVII 86732 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.46;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1445,156,0 chrVII 87769 . A G 530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.091;QD=19.63;ReadPosRankSum=1.348;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:63:563,63,0 chrVII 88301 . T C 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.487;QD=20.43;ReadPosRankSum=1.678;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2628,291,0 chrVII 88598 . T A 2167 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.64;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2200,237,0 chrVII 88664 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.05;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2306,252,0 chrVII 88681 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.72;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2143,237,0 chrVII 88968 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.19;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1648,174,0 chrVII 89900 . T C 54.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=20.3972;MLEAC=1;MLEAF=0.500;MQ=59.17;MQ0=0;MQRankSum=0.427;QD=1.94;ReadPosRankSum=-2.134;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:24,4:28:7:84,0,7 chrVII 90087 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1842,204,0 chrVII 90290 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1681,186,0 chrVII 90761 . T C 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.825;QD=22.02;ReadPosRankSum=1.650;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:958,108,0 chrVII 90968 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1868,201,0 chrVII 91031 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.72;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1954,207,0 chrVII 91467 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.80;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1428,153,0 chrVII 91652 . G T 1813 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.37;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1846,201,0 chrVII 92390 . A T 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=95;Dels=0.00;FS=4.947;HaplotypeScore=18.4124;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.462;QD=15.73;ReadPosRankSum=3.022;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:5,89:95:99:1527,143,0 chrVII 92423 . A T 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.798;DP=70;Dels=0.00;FS=6.037;HaplotypeScore=49.0100;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-2.030;QD=12.16;ReadPosRankSum=1.160;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:75:884,75,0 chrVII 92586 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.26;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2126,234,0 chrVII 92652 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.26;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1725,183,0 chrVII 92982 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.08;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2373,258,0 chrVII 93270 . C T 4125.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.0650;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.78;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:4125,444,0 chrVII 93381 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.31;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1736,198,0 chrVII 93397 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.06;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1620,180,0 chrVII 93525 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.59;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2070,219,0 chrVII 93622 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.2095;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.19;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2202,234,0 chrVII 94124 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.12;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1830,201,0 chrVII 94586 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.16;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1717,192,0 chrVII 94635 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=96;Dels=0.00;FS=9.737;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.084;QD=19.67;ReadPosRankSum=2.864;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1921,216,0 chrVII 94998 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.039;QD=15.69;ReadPosRankSum=1.693;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1429,162,0 chrVII 95005 . T A 1361 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=14.33;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1394,156,0 chrVII 95029 . C A 1637 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=15.44;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1670,189,0 chrVII 95884 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1777,201,0 chrVII 96070 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.92;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1560,168,0 chrVII 96091 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.88;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1249,129,0 chrVII 96214 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.59;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2216,237,0 chrVII 96337 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.995;QD=17.21;ReadPosRankSum=1.658;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1651,183,0 chrVII 96869 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.83;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2076,231,0 chrVII 96932 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.65;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1684,183,0 chrVII 97008 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3463;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.92;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1766,189,0 chrVII 97411 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.42;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1470,165,0 chrVII 97412 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.03;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1421,153,0 chrVII 98090 . C A 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.030;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.953;QD=19.75;ReadPosRankSum=0.819;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2601,276,0 chrVII 98117 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=14.89;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1909,207,0 chrVII 98124 . G T 1863 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=13.31;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:1896,210,0 chrVII 98387 . T G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=101;Dels=0.00;FS=9.856;HaplotypeScore=11.4201;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-1.623;QD=17.48;ReadPosRankSum=2.807;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:3,96:101:99:1798,204,0 chrVII 98492 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9985;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=17.72;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1770,195,0 chrVII 98589 . G T 1279 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3304;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;MQRankSum=-0.264;QD=13.75;ReadPosRankSum=1.469;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1312,144,0 chrVII 98592 . A C 1242 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;MQRankSum=-0.019;QD=13.35;ReadPosRankSum=1.583;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1275,141,0 chrVII 98593 . T C 1352 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=14.23;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1385,156,0 chrVII 98613 . A C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=96.5811;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;MQRankSum=-0.219;QD=0.35;ReadPosRankSum=2.404;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:9:70,9,0 chrVII 99303 . T A 1663 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.1913;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.42;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1696,183,0 chrVII 99361 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.70;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1213,135,0 chrVII 99976 . T C 736 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.44;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:769,87,0 chrVII 100009 . A G 770 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=16.38;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:803,90,0 chrVII 100015 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.06;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:852,93,0 chrVII 100030 . T C 789 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.44;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:822,93,0 chrVII 100087 . A G 459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-1.286;QD=14.81;ReadPosRankSum=1.621;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:54:492,54,0 chrVII 100110 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.65;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:779,87,0 chrVII 100175 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.44;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1076,114,0 chrVII 100351 . T A 1817 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.59;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1850,204,0 chrVII 100717 . A G 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=4.381;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.224;QD=19.55;ReadPosRankSum=1.651;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1714,192,0 chrVII 100756 . T C 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.855;QD=21.09;ReadPosRankSum=1.688;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1699,192,0 chrVII 100825 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.14;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1503,168,0 chrVII 100858 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.91;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1720,189,0 chrVII 100918 . C A 2235 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.78;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2268,243,0 chrVII 101050 . A G 1531 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1674;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.69;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1564,177,0 chrVII 101140 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.577;QD=18.64;ReadPosRankSum=1.671;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2177,246,0 chrVII 101815 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4336;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.866;QD=24.71;ReadPosRankSum=1.691;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:2133,237,0 chrVII 101923 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.27;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1614,183,0 chrVII 102109 . G A 2289 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2322,258,0 chrVII 102386 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.41;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1135,123,0 chrVII 102510 . G A 341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.317;QD=13.64;ReadPosRankSum=1.456;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:42:374,42,0 chrVII 102955 . C G 941 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:53:99:974,111,0 chrVII 103410 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1321,144,0 chrVII 104051 . G T 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;DP=57;Dels=0.00;FS=69.079;HaplotypeScore=5.8635;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-2.122;QD=2.07;ReadPosRankSum=-3.761;SB=0.037 GT:AD:DP:GQ:PL 0/1:39,18:57:99:148,0,451 chrVII 104502 . G A 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DP=81;Dels=0.00;FS=3.869;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.332;QD=20.31;ReadPosRankSum=1.155;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1678,165,0 chrVII 104760 . G A 2200 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.45;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2233,237,0 chrVII 104775 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.87;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1892,204,0 chrVII 104993 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.85;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1798,195,0 chrVII 106068 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.21;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1518,162,0 chrVII 106152 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.23;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1348,150,0 chrVII 106314 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1479,159,0 chrVII 106438 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1402,159,0 chrVII 106751 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.62;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1676,180,0 chrVII 106941 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.381;QD=19.38;ReadPosRankSum=1.682;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1370,156,0 chrVII 107169 . C T 2309 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3417;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.20;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2342,252,0 chrVII 107461 . A G 1231 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.94;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1264,144,0 chrVII 107657 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.81;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:96:842,96,0 chrVII 107757 . T G 728 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.22;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:761,87,0 chrVII 107771 . A G 644 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.95;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:677,78,0 chrVII 107775 . T C 570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;DP=36;Dels=0.00;FS=2.795;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.070;QD=15.83;ReadPosRankSum=2.244;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:2,34:36:69:603,69,0 chrVII 108238 . G C 819 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:852,96,0 chrVII 108343 . A G 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=7.304;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.491;QD=23.95;ReadPosRankSum=1.652;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1063,117,0 chrVII 108369 . A C 884 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=17.00;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:917,105,0 chrVII 108374 . A C 856 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;MQRankSum=0.955;QD=17.47;ReadPosRankSum=0.177;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:889,102,0 chrVII 108376 . G T 923 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.46;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:956,102,0 chrVII 108797 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.20;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1644,186,0 chrVII 109424 . T G 2250 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3440;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.23;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2283,255,0 chrVII 109776 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.88;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1578,177,0 chrVII 109784 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.16;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1286,144,0 chrVII 109841 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=17.85;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1425,153,0 chrVII 110083 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.87;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:2147,231,0 chrVII 110415 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.55;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1951,210,0 chrVII 110713 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;MQRankSum=0.278;QD=18.33;ReadPosRankSum=1.689;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1518,168,0 chrVII 110718 . T A 1569 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=19.37;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1602,174,0 chrVII 110740 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=19.35;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1581,183,0 chrVII 110756 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=20.00;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1893,213,0 chrVII 110797 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=20.74;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2107,237,0 chrVII 110894 . T A 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.529;DP=175;Dels=0.00;FS=13.768;HaplotypeScore=22.2964;MLEAC=1;MLEAF=0.500;MQ=15.04;MQ0=2;MQRankSum=-0.608;QD=0.17;ReadPosRankSum=-0.645;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:125,50:175:60:60,0,656 chrVII 111303 . T C 2766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=170;Dels=0.00;FS=60.791;HaplotypeScore=5.2342;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=2;MQRankSum=6.143;QD=16.27;ReadPosRankSum=-0.994;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:17,153:170:99:2799,312,0 chrVII 111319 . T G 3161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;DP=190;Dels=0.00;FS=48.717;HaplotypeScore=13.6202;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=5.320;QD=16.64;ReadPosRankSum=0.818;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:20,169:190:99:3194,357,0 chrVII 111552 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.26;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2788,324,0 chrVII 111921 . G C 1933 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.57;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1966,225,0 chrVII 111953 . T C 1967 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.71;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2000,225,0 chrVII 111972 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.541;QD=19.16;ReadPosRankSum=1.552;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1872,210,0 chrVII 112158 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.31;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1211,132,0 chrVII 112793 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.93;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2094,228,0 chrVII 112862 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.12;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2842,318,0 chrVII 112960 . C T 271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.982;DP=136;Dels=0.00;FS=22.756;HaplotypeScore=126.1573;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-4.910;QD=1.99;ReadPosRankSum=1.798;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:52,84:136:33:304,33,0 chrVII 112994 . G A 581.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;DP=108;Dels=0.00;FS=6.727;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=0;MQRankSum=2.013;QD=5.38;ReadPosRankSum=6.956;SB=-7.950e+02 GT:AD:DP:GQ:PL 0/1:20,88:108:21:611,0,21 chrVII 113021 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=16.45;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1678,183,0 chrVII 113792 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.81;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1974,213,0 chrVII 113828 . A C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.268;QD=21.09;ReadPosRankSum=1.696;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2079,231,0 chrVII 115232 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=16.69;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1168,132,0 chrVII 115250 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.10;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1336,150,0 chrVII 115276 . A G 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-1.639;QD=18.47;ReadPosRankSum=1.639;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1400,162,0 chrVII 115395 . T C 2425 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=17.96;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2458,282,0 chrVII 115398 . C T 2353 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=16.93;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2386,264,0 chrVII 115399 . G A 2416 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=17.38;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2449,273,0 chrVII 115438 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.86;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2496,276,0 chrVII 115467 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.13;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,96:101:99:1965,213,0 chrVII 115612 . A T 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.371;QD=19.62;ReadPosRankSum=1.670;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1132,120,0 chrVII 115633 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.69;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:949,99,0 chrVII 115795 . C T 76.51 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=11.5096;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=1.39;SB=-5.005e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:12:109,12,0 chrVII 115872 . C A 1295 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.33;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1328,147,0 chrVII 116400 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2540;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.26;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2100,240,0 chrVII 116412 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3020;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.35;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1949,222,0 chrVII 117199 . A C 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=2.873;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.753;QD=17.76;ReadPosRankSum=2.330;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1880,210,0 chrVII 117627 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.90;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1645,186,0 chrVII 117630 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.78;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1596,180,0 chrVII 117810 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1339,147,0 chrVII 117877 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.26;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1691,192,0 chrVII 118553 . G A 3012 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.99;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3045,324,0 chrVII 118820 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.26;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1824,198,0 chrVII 118832 . T C 1617 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=16.67;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1650,186,0 chrVII 118901 . G A 2341 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.88;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2374,261,0 chrVII 119075 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.33;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2109,228,0 chrVII 119177 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.12;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1786,192,0 chrVII 119852 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=16.98;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1646,180,0 chrVII 120263 . T G 1112 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=12.09;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1145,132,0 chrVII 120506 . T C 2326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.8886;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.081;QD=21.34;ReadPosRankSum=2.357;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:2,104:109:99:2359,264,0 chrVII 121291 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.90;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2092,225,0 chrVII 121571 . T C 2463 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7131;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.46;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2496,282,0 chrVII 121627 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.2746;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.95;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1833,207,0 chrVII 121697 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.19;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2336,252,0 chrVII 121703 . A G 2142 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.15;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2175,246,0 chrVII 121769 . G T 2280 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.11;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2313,252,0 chrVII 121802 . T G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=3.222;HaplotypeScore=9.0801;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.973;QD=21.89;ReadPosRankSum=1.699;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2353,261,0 chrVII 121902 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.25;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1924,219,0 chrVII 122088 . A T 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.077;QD=21.84;ReadPosRankSum=1.617;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2020,213,0 chrVII 122538 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.97;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2067,237,0 chrVII 122595 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.62;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2303,264,0 chrVII 122853 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=103;Dels=0.00;FS=7.562;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.977;QD=19.86;ReadPosRankSum=2.305;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2079,231,0 chrVII 123330 . G C 1705 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.53;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1738,198,0 chrVII 123812 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0818;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.49;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2369,252,0 chrVII 124205 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.27;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1311,144,0 chrVII 124460 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.53;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1367,156,0 chrVII 124850 . T C 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.439;QD=23.20;ReadPosRankSum=1.674;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1402,159,0 chrVII 124916 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.41;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1248,141,0 chrVII 124970 . T C 1781 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.46;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1814,207,0 chrVII 125003 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2363;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.23;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2286,249,0 chrVII 125090 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.591;QD=22.76;ReadPosRankSum=1.691;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1968,219,0 chrVII 125177 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.68;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1702,180,0 chrVII 125195 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0443;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=1.086;QD=16.91;ReadPosRankSum=1.640;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1352,150,0 chrVII 125277 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.564;QD=20.16;ReadPosRankSum=1.693;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1827,201,0 chrVII 125279 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.13;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1845,207,0 chrVII 125897 . A C 1606 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.83;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1639,183,0 chrVII 126466 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1457,162,0 chrVII 126836 . A T 903 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.63;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:936,102,0 chrVII 127595 . C T 2693 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.95;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2726,303,0 chrVII 127838 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.56;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1555,174,0 chrVII 127940 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=107;Dels=0.00;FS=3.310;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.940;QD=20.87;ReadPosRankSum=1.699;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,104:107:99:2266,261,0 chrVII 128732 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1306,141,0 chrVII 129417 . G C 2115 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2148,240,0 chrVII 130110 . T C 1588 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.85;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1621,180,0 chrVII 130111 . A C 1618 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.73;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1651,189,0 chrVII 130373 . A T 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.609;QD=16.36;ReadPosRankSum=1.639;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:75:671,75,0 chrVII 130374 . G A 667 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.10;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:78:700,78,0 chrVII 130449 . T C 658 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.35;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:691,78,0 chrVII 131485 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.62;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1590,177,0 chrVII 131489 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.03;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1568,174,0 chrVII 133650 . A C 1477 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.70;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1510,168,0 chrVII 136414 . T A 1661 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.03;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1694,186,0 chrVII 138791 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.42;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2197,231,0 chrVII 139341 . A G 2485 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.39;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2518,285,0 chrVII 139707 . A C 1794 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.30;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1827,210,0 chrVII 140116 . T G 228 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=12.67;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,15:18:30:261,30,0 chrVII 140188 . C T 413 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=8.98;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:48:446,48,0 chrVII 140207 . G A 791 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:90:824,90,0 chrVII 140237 . C T 622 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=12.96;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:72:655,72,0 chrVII 140536 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.16;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1618,180,0 chrVII 140686 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.12;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1239,129,0 chrVII 140806 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.16;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2382,264,0 chrVII 141082 . A C 1273 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.22;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1306,150,0 chrVII 141144 . A G 1627 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.08;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1660,186,0 chrVII 141331 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1479;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.94;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1612,183,0 chrVII 141776 . T C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.212;DP=101;Dels=0.00;FS=6.133;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-2.041;QD=20.74;ReadPosRankSum=2.506;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2128,214,0 chrVII 141849 . G T 1842 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.61;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1875,204,0 chrVII 142031 . A T 2038 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.38;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2071,228,0 chrVII 142176 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8820;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.67;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1463,156,0 chrVII 142456 . C A 1326 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1359,144,0 chrVII 142656 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.00;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1620,177,0 chrVII 142677 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.13;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1467,156,0 chrVII 142773 . T C 1081 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1114,120,0 chrVII 142953 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.45;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2323,252,0 chrVII 144114 . C T 1370 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=16.71;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1403,156,0 chrVII 144117 . C A 1384 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=18.96;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1417,153,0 chrVII 144119 . G A 1350 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=19.29;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1383,147,0 chrVII 144124 . T G 1198 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=16.41;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1231,138,0 chrVII 144160 . A G 938 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=14.00;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:971,108,0 chrVII 144235 . T C 818 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.59;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:851,96,0 chrVII 144248 . G A 831 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=16.96;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:864,99,0 chrVII 144296 . T A 668 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=12.85;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:701,75,0 chrVII 144298 . T C 563 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;QD=11.04;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:596,66,0 chrVII 144318 . C T 648 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=9.00;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:72:681,72,0 chrVII 144323 . G A 711 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=9.00;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:744,81,0 chrVII 144347 . C T 855 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=10.82;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:888,99,0 chrVII 144370 . T C 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;MQRankSum=-0.346;QD=11.22;ReadPosRankSum=1.689;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:942,108,0 chrVII 144382 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=9.79;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1022,108,0 chrVII 144440 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.83;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1639,174,0 chrVII 144459 . A G 2163 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3274;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.21;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2196,249,0 chrVII 144719 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.76;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1930,213,0 chrVII 144744 . T C 2603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=143;Dels=0.00;FS=9.239;HaplotypeScore=6.7187;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-2.240;QD=18.20;ReadPosRankSum=2.415;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,139:143:99:2636,297,0 chrVII 144924 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.08;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1210,135,0 chrVII 145053 . A G 1150 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.18;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1183,132,0 chrVII 145098 . G A 855 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.55;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:888,96,0 chrVII 145758 . G C 1294 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.31;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1327,150,0 chrVII 145800 . T C 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.617;DP=66;Dels=0.00;FS=2.494;HaplotypeScore=11.4452;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.369;QD=20.86;ReadPosRankSum=2.801;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1410,159,0 chrVII 145848 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.30;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2177,252,0 chrVII 146655 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.064;QD=19.60;ReadPosRankSum=1.607;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1660,192,0 chrVII 147189 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.28;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1714,189,0 chrVII 147324 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.36;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1330,147,0 chrVII 147477 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.947;QD=23.12;ReadPosRankSum=1.686;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1790,201,0 chrVII 147916 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.40;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:988,111,0 chrVII 148092 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.677;QD=19.48;ReadPosRankSum=1.567;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1260,141,0 chrVII 148118 . T C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=0.945;QD=21.97;ReadPosRankSum=1.680;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1483,168,0 chrVII 148376 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.28;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1430,162,0 chrVII 148710 . A G 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=4.698;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.969;QD=22.18;ReadPosRankSum=1.674;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1386,156,0 chrVII 148767 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=16.78;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:96:889,96,0 chrVII 148771 . G T 742 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=14.84;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:775,84,0 chrVII 148796 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.69;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1042,117,0 chrVII 148854 . C G 1355 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.85;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1388,156,0 chrVII 148891 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.61;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1543,165,0 chrVII 148906 . A C 1525 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.94;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1558,174,0 chrVII 148947 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.10;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1662,180,0 chrVII 148957 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.41;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1774,192,0 chrVII 148993 . G C 1892 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.34;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1925,216,0 chrVII 149019 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=90;Dels=0.00;FS=14.467;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.557;QD=19.64;ReadPosRankSum=2.876;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:3,86:90:99:1801,204,0 chrVII 149107 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.07;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1335,147,0 chrVII 149109 . C G 1303 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.72;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1336,150,0 chrVII 149142 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.08;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,50:53:99:1044,111,0 chrVII 149252 . G C 747 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=12.88;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:87:780,87,0 chrVII 149279 . A T 774 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=14.07;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:87:807,87,0 chrVII 149346 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0519;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.87;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1335,141,0 chrVII 149387 . A G 1421 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1454,168,0 chrVII 149393 . G A 1453 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1486,159,0 chrVII 150130 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.39;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1297,144,0 chrVII 150234 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=17.40;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1460,153,0 chrVII 150271 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=16.57;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1143,129,0 chrVII 150302 . T A 1402 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.97;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1435,156,0 chrVII 150329 . T C 1264 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1297,147,0 chrVII 150335 . A C 1304 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.39;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1337,150,0 chrVII 150399 . T C 890 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.54;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:923,105,0 chrVII 150444 . G T 1042 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.61;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1075,114,0 chrVII 150466 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=19.67;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1272,144,0 chrVII 150477 . T C 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-1.353;QD=18.08;ReadPosRankSum=1.570;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1190,135,0 chrVII 150487 . A G 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=63;Dels=0.05;FS=3.085;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.264;QD=15.92;ReadPosRankSum=1.615;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1036,120,0 chrVII 150517 . A G 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.02;FS=3.382;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.278;QD=17.06;ReadPosRankSum=1.619;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1091,126,0 chrVII 150806 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.82;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1095,120,0 chrVII 150832 . T A 1348 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7570;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.40;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1381,150,0 chrVII 150894 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.71;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1736,186,0 chrVII 150923 . A G 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=3.443;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.440;QD=20.16;ReadPosRankSum=1.696;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1948,219,0 chrVII 150956 . C A 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.622;HaplotypeScore=3.1800;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.087;QD=19.29;ReadPosRankSum=1.207;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1943,207,0 chrVII 150964 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3782;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=17.61;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1812,198,0 chrVII 151433 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.05;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2138,234,0 chrVII 151493 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.47;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2588,291,0 chrVII 151562 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.53;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1793,201,0 chrVII 151571 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1724,201,0 chrVII 151622 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.56;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1388,144,0 chrVII 151697 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.18;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1184,129,0 chrVII 151811 . A G 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.447;QD=18.19;ReadPosRankSum=2.404;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2016,222,0 chrVII 152066 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.41;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1871,210,0 chrVII 152150 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.39;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1445,165,0 chrVII 152342 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.23;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2283,246,0 chrVII 152354 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.87;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2099,228,0 chrVII 152410 . C A 2096 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.75;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2129,228,0 chrVII 152609 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.49;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1436,156,0 chrVII 152750 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.73;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1513,171,0 chrVII 152788 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=17.24;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1688,183,0 chrVII 152800 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6968;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.08;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1775,192,0 chrVII 152914 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.76;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1791,189,0 chrVII 152918 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.54;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1656,174,0 chrVII 152948 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.58;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1263,135,0 chrVII 153026 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.87;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:669,75,0 chrVII 153123 . G C 1255 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.31;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:65:99:1288,144,0 chrVII 153164 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.68;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1501,162,0 chrVII 153186 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.27;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1440,168,0 chrVII 153302 . A T 963 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=14.82;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:996,111,0 chrVII 153368 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.78;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:968,108,0 chrVII 153377 . T C 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.29;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1007,111,0 chrVII 153437 . G A 946 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.13;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:979,108,0 chrVII 153480 . C T 718 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=16.70;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:751,81,0 chrVII 153481 . T C 686 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=16.73;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:719,84,0 chrVII 153503 . T A 1000 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.18;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1033,111,0 chrVII 153551 . T G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.378;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.843;QD=16.52;ReadPosRankSum=1.685;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1272,144,0 chrVII 153574 . A T 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=4.080;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.414;QD=17.30;ReadPosRankSum=1.493;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1538,168,0 chrVII 153602 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.34;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1702,183,0 chrVII 153827 . T C 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-0.986;QD=20.55;ReadPosRankSum=1.626;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1410,159,0 chrVII 153833 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=21.38;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1444,153,0 chrVII 154145 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=22.26;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1858,195,0 chrVII 154159 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.274;QD=19.93;ReadPosRankSum=1.641;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1548,174,0 chrVII 154193 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.31;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1658,180,0 chrVII 154199 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=17.24;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1533,162,0 chrVII 154299 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=7.252;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.341;QD=20.09;ReadPosRankSum=2.357;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1640,183,0 chrVII 154339 . G T 1519 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.70;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1552,165,0 chrVII 154496 . A G 1046 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.43;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1079,126,0 chrVII 154571 . G T 1127 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=92.0735;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=14.09;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1160,126,0 chrVII 154863 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.84;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2512,273,0 chrVII 154885 . C T 2278 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2311,249,0 chrVII 154957 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.86;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1839,195,0 chrVII 154996 . G T 1083 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.67;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1116,120,0 chrVII 155413 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1371,150,0 chrVII 155494 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.73;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2105,240,0 chrVII 155803 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.61;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1084,114,0 chrVII 156057 . T C 1350 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1383,153,0 chrVII 156252 . G A 1182 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1215,129,0 chrVII 156333 . C G 700 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:81:733,81,0 chrVII 156450 . A G 413 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:51:446,51,0 chrVII 156702 . A G 1390 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1423,162,0 chrVII 156917 . G T 1206 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=11.6515;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.23;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1239,132,0 chrVII 157262 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.189;DP=124;Dels=0.00;FS=8.027;HaplotypeScore=7.3377;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;MQRankSum=-0.007;QD=20.76;ReadPosRankSum=3.359;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:4,120:124:99:2607,300,0 chrVII 157515 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=21.27;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2288,246,0 chrVII 157566 . T G 1744 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2874;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=15.85;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1777,204,0 chrVII 157579 . A T 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;MQRankSum=-1.463;QD=15.54;ReadPosRankSum=1.698;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1634,174,0 chrVII 157585 . A G 1179 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;MQRankSum=-0.108;QD=12.28;ReadPosRankSum=-0.036;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1212,119,0 chrVII 157593 . A T 1352 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;QD=15.72;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1385,150,0 chrVII 157594 . C T 1208 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=13.57;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1241,141,0 chrVII 157713 . A G 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.613;QD=16.61;ReadPosRankSum=1.679;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1129,126,0 chrVII 157735 . C A 1124 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=16.78;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1157,129,0 chrVII 157782 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.28;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:912,105,0 chrVII 157822 . C G 1163 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=16.38;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:71:99:1196,135,0 chrVII 157854 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4464;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.40;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1847,195,0 chrVII 157899 . G T 2338 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.38;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2371,261,0 chrVII 157962 . G C 2239 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.62;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2272,258,0 chrVII 158256 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.0870;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.72;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1926,216,0 chrVII 158391 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.43;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1393,159,0 chrVII 158434 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.65;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1505,171,0 chrVII 158562 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2180;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.76;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1930,213,0 chrVII 158919 . G A 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.220;DP=142;Dels=0.00;FS=8.692;HaplotypeScore=399.6933;MLEAC=1;MLEAF=0.500;MQ=41.60;MQ0=0;MQRankSum=-6.335;QD=0.45;ReadPosRankSum=-1.956;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:103,39:142:94:94,0,601 chrVII 158925 . G A 158.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.653;DP=137;Dels=0.00;FS=3.372;HaplotypeScore=211.0147;MLEAC=1;MLEAF=0.500;MQ=39.01;MQ0=0;MQRankSum=-5.818;QD=1.15;ReadPosRankSum=-1.762;SB=-2.260e+02 GT:AD:DP:GQ:PL 0/1:92,45:137:99:188,0,290 chrVII 158928 . A T 223.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;DP=129;Dels=0.00;FS=6.588;HaplotypeScore=94.2603;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=0.025;QD=1.73;ReadPosRankSum=-5.064;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:88,36:129:99:253,0,144 chrVII 158931 . G A 94.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;DP=129;Dels=0.00;FS=1.955;HaplotypeScore=111.3306;MLEAC=1;MLEAF=0.500;MQ=36.16;MQ0=0;MQRankSum=-2.195;QD=0.73;ReadPosRankSum=0.398;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:107,22:129:99:124,0,234 chrVII 158937 . A G 53.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=116.7566;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=-2.460;QD=0.43;ReadPosRankSum=-2.216;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:91,33:124:83:83,0,678 chrVII 158939 . T C 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.729;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=111.2374;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=-2.332;QD=1.06;ReadPosRankSum=1.410;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:68,54:124:99:162,0,598 chrVII 158940 . T A 147.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;DP=122;Dels=0.04;FS=1.604;HaplotypeScore=109.6600;MLEAC=1;MLEAF=0.500;MQ=34.35;MQ0=0;MQRankSum=0.123;QD=1.20;ReadPosRankSum=2.235;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:63,49:117:99:177,0,608 chrVII 158946 . T C 198.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;DP=131;Dels=0.00;FS=5.940;HaplotypeScore=96.0264;MLEAC=1;MLEAF=0.500;MQ=33.70;MQ0=0;MQRankSum=-3.482;QD=1.51;ReadPosRankSum=-0.351;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:86,45:131:99:228,0,605 chrVII 158952 . T C 260.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.048;DP=134;Dels=0.00;FS=7.055;HaplotypeScore=87.3518;MLEAC=1;MLEAF=0.500;MQ=33.30;MQ0=0;MQRankSum=-0.497;QD=1.94;ReadPosRankSum=1.542;SB=-2.600e+02 GT:AD:DP:GQ:PL 0/1:80,54:134:99:290,0,522 chrVII 158958 . T C 372.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420;DP=130;Dels=0.00;FS=2.546;HaplotypeScore=83.0692;MLEAC=1;MLEAF=0.500;MQ=32.78;MQ0=0;MQRankSum=-2.123;QD=2.86;ReadPosRankSum=-3.235;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:61,52:130:99:402,0,326 chrVII 158961 . G A 738.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.002;DP=130;Dels=0.00;FS=0.923;HaplotypeScore=99.1944;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-0.018;QD=5.68;ReadPosRankSum=2.062;SB=-8.161e+02 GT:AD:DP:GQ:PL 1/1:23,107:130:1:767,1,0 chrVII 158964 . C G,T 631.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.556;DP=131;Dels=0.00;FS=1.068;HaplotypeScore=20.2134;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.07;MQ0=0;MQRankSum=-0.860;QD=4.82;ReadPosRankSum=2.524;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/2:21,62,48:131:99:691,296,319,333,0,359 chrVII 158967 . G A 684.41 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.943;DP=130;Dels=0.00;FS=1.100;HaplotypeScore=102.0015;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-0.658;QD=5.26;ReadPosRankSum=1.620;SB=-8.494e+02 GT:AD:DP:GQ:PL 1/1:15,115:130:13:717,13,0 chrVII 158970 . T A 167.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DP=130;Dels=0.00;FS=0.766;HaplotypeScore=88.3298;MLEAC=1;MLEAF=0.500;MQ=33.74;MQ0=0;MQRankSum=-1.354;QD=1.28;ReadPosRankSum=-6.241;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:73,42:130:99:197,0,459 chrVII 158973 . G A 149.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.564;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=75.0390;MLEAC=1;MLEAF=0.500;MQ=34.20;MQ0=0;MQRankSum=-2.045;QD=1.18;ReadPosRankSum=-6.804;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:84,41:126:99:179,0,514 chrVII 159045 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5585;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=15.92;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1689,180,0 chrVII 159246 . G C 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7401;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.77;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1695,189,0 chrVII 159586 . C T 1264 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.32;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1297,141,0 chrVII 159617 . C T 888 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=17.08;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:921,99,0 chrVII 159644 . C G 896 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=16.29;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:929,105,0 chrVII 159705 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.85;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:787,84,0 chrVII 159837 . C T 699 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:84:732,84,0 chrVII 159987 . G C 557 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:26:66:590,66,0 chrVII 160388 . G A 1189 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.23;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1222,129,0 chrVII 160577 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.86;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1089,120,0 chrVII 160667 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1505,162,0 chrVII 160781 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1328,147,0 chrVII 160952 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5032;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.17;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1585,183,0 chrVII 160998 . C A 1711 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.22;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1744,189,0 chrVII 161445 . T C 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.725;QD=21.90;ReadPosRankSum=1.692;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1938,216,0 chrVII 162080 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.83;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1659,180,0 chrVII 162140 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.69;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1746,192,0 chrVII 162554 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.33;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1239,141,0 chrVII 162614 . A C 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.956;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.549;QD=20.75;ReadPosRankSum=2.331;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1755,192,0 chrVII 162781 . T A 947 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.04;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:980,105,0 chrVII 162848 . G A 605 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=13.75;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:638,69,0 chrVII 162943 . C T 717 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:78:750,78,0 chrVII 163245 . A T 1212 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=18.65;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1245,138,0 chrVII 163256 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.78;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1460,165,0 chrVII 163360 . A C 1309 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.24;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1342,156,0 chrVII 163491 . C T 3362.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.54;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3362,354,0 chrVII 163894 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1814,201,0 chrVII 164066 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.79;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1950,213,0 chrVII 164429 . T A 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=85;Dels=0.00;FS=6.180;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.787;QD=21.66;ReadPosRankSum=2.242;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1874,198,0 chrVII 164774 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.95;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1689,189,0 chrVII 164885 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.328;QD=22.23;ReadPosRankSum=1.675;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1367,153,0 chrVII 164981 . T A 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.367;QD=17.68;ReadPosRankSum=1.696;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1713,186,0 chrVII 164982 . A G 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.638;QD=17.20;ReadPosRankSum=1.696;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1701,192,0 chrVII 165111 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.69;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1803,201,0 chrVII 165441 . T A 1303 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=14.98;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1336,144,0 chrVII 165523 . C A 1507 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=21.9563;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.16;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1540,165,0 chrVII 165778 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=20.69;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1585,177,0 chrVII 165780 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=22.42;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1737,186,0 chrVII 165842 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.57;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:994,111,0 chrVII 165866 . A G 802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.217;QD=16.71;ReadPosRankSum=1.660;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:96:835,96,0 chrVII 166200 . A G 103.13 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=34.4367;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=2.79;SB=-4.211e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:18:136,18,0 chrVII 166257 . G A 874 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.61;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:907,99,0 chrVII 166667 . C G 862 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.52;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:42:99:895,102,0 chrVII 167076 . T C 846 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.23;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:879,99,0 chrVII 167099 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.72;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:894,99,0 chrVII 167443 . A G 909 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.17;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:942,105,0 chrVII 167578 . C T 698 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.86;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:731,78,0 chrVII 167583 . G C 628 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.44;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:78:661,78,0 chrVII 167889 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.10;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1735,186,0 chrVII 168156 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.18;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1740,198,0 chrVII 168663 . C T 840 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.00;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:873,93,0 chrVII 168738 . T C 709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=40;Dels=0.00;FS=6.851;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.287;QD=17.72;ReadPosRankSum=2.197;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:2,37:40:84:742,84,0 chrVII 168780 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.34;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1399,150,0 chrVII 169165 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.14;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1212,129,0 chrVII 169257 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1467,162,0 chrVII 169612 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.393;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.063;QD=22.81;ReadPosRankSum=1.649;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1926,216,0 chrVII 170208 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.92;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1640,186,0 chrVII 170211 . T C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-1.327;QD=17.11;ReadPosRankSum=1.622;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1641,180,0 chrVII 170222 . C G 1572 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=16.21;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1605,180,0 chrVII 170364 . T C 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.02;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,105,0 chrVII 170641 . G A 251 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=10.91;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:30:284,30,0 chrVII 170880 . A C 176.03 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-2.797e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:24:209,24,0 chrVII 171282 . T C 426 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=23.67;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:51:459,51,0 chrVII 171465 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.03;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:775,84,0 chrVII 171481 . G A 563 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.06;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:596,63,0 chrVII 171520 . G A 421 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=10.27;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:454,48,0 chrVII 171536 . C G 393 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=9.14;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:48:426,48,0 chrVII 171542 . T G 439 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=10.45;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:472,54,0 chrVII 171569 . G A 390 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.67;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:45:423,45,0 chrVII 171571 . A T 424 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=9.22;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:48:457,48,0 chrVII 171586 . G C 372 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=8.09;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:45:405,45,0 chrVII 171610 . G A 417 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=8.87;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:48:450,48,0 chrVII 171617 . T C 481 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=10.02;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:57:514,57,0 chrVII 171788 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.46;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1428,153,0 chrVII 171909 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=20.78;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1903,207,0 chrVII 171921 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=87;Dels=0.00;FS=3.062;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;MQRankSum=-0.215;QD=19.00;ReadPosRankSum=2.393;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1686,189,0 chrVII 172111 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.29;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1287,141,0 chrVII 172407 . A T 1048 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1081,120,0 chrVII 172548 . T C 521 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=12.40;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:63:554,63,0 chrVII 172558 . T A 549 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=15.25;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:582,63,0 chrVII 172762 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=23.05;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1393,159,0 chrVII 172879 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.84;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:825,93,0 chrVII 173065 . T C 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.693;QD=22.72;ReadPosRankSum=1.663;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1169,132,0 chrVII 173089 . G C 991 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.52;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1024,114,0 chrVII 173120 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.21;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:876,93,0 chrVII 173129 . A G 630 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=14.00;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:663,75,0 chrVII 173276 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1322,141,0 chrVII 173486 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.18;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1192,132,0 chrVII 173498 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.42;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1095,123,0 chrVII 173856 . T A 1699 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.76;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1732,195,0 chrVII 174016 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.23;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2286,246,0 chrVII 174098 . C G 2506 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.78;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2539,282,0 chrVII 174324 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.72;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2036,228,0 chrVII 174423 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.105;DP=110;Dels=0.00;FS=3.033;HaplotypeScore=18.9673;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.242;QD=17.65;ReadPosRankSum=2.404;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:2,105:110:99:1974,225,0 chrVII 174507 . A G 2897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=4.963;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.538;QD=24.55;ReadPosRankSum=1.672;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2930,327,0 chrVII 174752 . A G 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.390;QD=19.91;ReadPosRankSum=1.542;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1845,213,0 chrVII 175098 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.96;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1773,186,0 chrVII 175645 . T A 1258 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.53;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1291,141,0 chrVII 175647 . T C 1209 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=14.93;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1242,141,0 chrVII 175704 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.38;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1736,189,0 chrVII 175787 . A G 2179 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.36;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2212,249,0 chrVII 175866 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=15.47;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1255,135,0 chrVII 175871 . A G 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.346;QD=15.53;ReadPosRankSum=1.686;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1198,135,0 chrVII 175893 . C G 1052 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4750;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=13.84;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1085,120,0 chrVII 175905 . T C 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7669;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=-0.739;QD=13.87;ReadPosRankSum=2.334;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1212,138,0 chrVII 175991 . G T 1495 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2577;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.42;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1528,168,0 chrVII 176415 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=88;Dels=0.00;FS=4.431;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.967;QD=22.50;ReadPosRankSum=1.692;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:2013,231,0 chrVII 176439 . C G 1971 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.42;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2004,222,0 chrVII 176712 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.6811;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.01;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1525,165,0 chrVII 177165 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.44;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,174,0 chrVII 177201 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.6501;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.44;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1382,153,0 chrVII 177524 . T C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=5.149;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.588;QD=20.58;ReadPosRankSum=1.684;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1515,174,0 chrVII 177632 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.96;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1588,174,0 chrVII 178052 . G T 2111 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.11;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2144,234,0 chrVII 178133 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.33;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2515,270,0 chrVII 178256 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.91;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1335,156,0 chrVII 178509 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.69;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1825,204,0 chrVII 180027 . A G 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.213;QD=17.27;ReadPosRankSum=1.675;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1069,123,0 chrVII 180319 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.48;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1247,132,0 chrVII 180873 . A G 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.341;QD=17.76;ReadPosRankSum=1.676;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1134,129,0 chrVII 181036 . A G 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=102;Dels=0.00;FS=3.324;HaplotypeScore=11.7987;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.645;QD=19.95;ReadPosRankSum=1.865;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:99:2068,234,0 chrVII 181069 . C G 2224 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.3734;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.86;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2257,258,0 chrVII 181138 . G A 2873 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.0926;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.74;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:121:99:2906,321,0 chrVII 181218 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9407;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=23.00;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1827,198,0 chrVII 181935 . T A 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.613;QD=22.15;ReadPosRankSum=1.692;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2004,216,0 chrVII 182104 . T C 2109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=108;Dels=0.00;FS=9.914;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.234;QD=19.53;ReadPosRankSum=2.879;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2142,240,0 chrVII 182242 . T G 2707 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.75;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2740,303,0 chrVII 182388 . C A 2071 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.27;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2104,222,0 chrVII 182485 . T G 2206 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.74;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2239,249,0 chrVII 182781 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.413;QD=19.49;ReadPosRankSum=1.641;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1514,168,0 chrVII 182995 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1450,156,0 chrVII 183038 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.354;QD=22.15;ReadPosRankSum=2.388;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1805,204,0 chrVII 183679 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.14;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2995,333,0 chrVII 183709 . T C 2800 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.95;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2833,315,0 chrVII 183823 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.84;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1977,222,0 chrVII 183996 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.56;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2189,243,0 chrVII 184067 . A G 2252 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.606;QD=18.77;ReadPosRankSum=1.703;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2285,258,0 chrVII 184072 . T C 2053 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.50;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2086,237,0 chrVII 184074 . T C 2083 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.77;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2116,234,0 chrVII 184213 . G T 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.45;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1272,141,0 chrVII 184357 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.91;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1128,120,0 chrVII 184367 . A T 1115 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.90;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1148,126,0 chrVII 184422 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.95;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1135,123,0 chrVII 184438 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=15.69;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1084,123,0 chrVII 184447 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.87;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1197,135,0 chrVII 184464 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.18;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1324,144,0 chrVII 184572 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1631,177,0 chrVII 185240 . T G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.990;QD=21.04;ReadPosRankSum=1.683;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1506,171,0 chrVII 185280 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.505;QD=21.47;ReadPosRankSum=1.619;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1364,153,0 chrVII 185379 . G T 785 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:818,90,0 chrVII 185620 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.57;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1110,126,0 chrVII 185846 . G A 537 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=16.27;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:570,60,0 chrVII 185969 . T A 982 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.35;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1015,108,0 chrVII 185982 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.90;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1036,111,0 chrVII 186184 . G T 1269 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.47;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1302,144,0 chrVII 186330 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.63;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1957,210,0 chrVII 186349 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=104;Dels=0.00;FS=2.993;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-0.833;QD=18.51;ReadPosRankSum=2.401;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:1958,219,0 chrVII 186568 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.6308;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.60;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2228,243,0 chrVII 186708 . A G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=100;Dels=0.00;FS=2.603;HaplotypeScore=5.0812;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.970;QD=16.49;ReadPosRankSum=2.889;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1682,189,0 chrVII 186792 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.70;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2041,216,0 chrVII 187003 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.34;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1518,171,0 chrVII 187054 . T G 1200 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.05;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1233,138,0 chrVII 187174 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.11;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1691,192,0 chrVII 187246 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.73;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1533,174,0 chrVII 187348 . G T 1181 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.63;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1214,129,0 chrVII 187354 . A G 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.293;QD=15.05;ReadPosRankSum=1.679;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1011,114,0 chrVII 187373 . C G 895 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.92;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:928,105,0 chrVII 187556 . C G 2328 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.17;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2361,261,0 chrVII 187678 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.11;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1603,180,0 chrVII 188143 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1420,159,0 chrVII 188201 . A G 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=2.984;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.624;QD=19.21;ReadPosRankSum=2.389;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1589,180,0 chrVII 188297 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.44;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2220,246,0 chrVII 188705 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.44;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1860,213,0 chrVII 188786 . A G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=88;Dels=0.00;FS=6.145;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.184;QD=18.58;ReadPosRankSum=2.920;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1668,186,0 chrVII 188827 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.01;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1687,189,0 chrVII 188978 . T A 1433 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.11;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1466,159,0 chrVII 189602 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.72;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2163,237,0 chrVII 189613 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.47;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1850,210,0 chrVII 189647 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=4.726;HaplotypeScore=7.0570;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.003;QD=16.22;ReadPosRankSum=1.696;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1606,177,0 chrVII 189910 . T G 973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.382;QD=16.49;ReadPosRankSum=1.674;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1006,111,0 chrVII 189920 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.30;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1149,123,0 chrVII 189992 . A G 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.129;QD=17.06;ReadPosRankSum=2.348;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:96:869,96,0 chrVII 190037 . C G 1008 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.67;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1041,114,0 chrVII 190253 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.70;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1787,189,0 chrVII 190288 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.49;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1580,174,0 chrVII 190333 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.24;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1350,144,0 chrVII 190505 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.79;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1931,210,0 chrVII 190638 . T C 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=90;Dels=0.00;FS=11.515;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.744;QD=22.13;ReadPosRankSum=3.417;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:5,85:90:99:2025,228,0 chrVII 190661 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.40;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1982,210,0 chrVII 190846 . G C 2252 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.98;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2285,255,0 chrVII 191102 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.31;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2431,270,0 chrVII 191348 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.215;QD=20.81;ReadPosRankSum=1.682;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:1,136:139:99:2926,333,0 chrVII 191489 . A G 3004 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.16;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3037,354,0 chrVII 191600 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=15.81;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1820,195,0 chrVII 191625 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.84;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1924,204,0 chrVII 191826 . A T 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.398;DP=104;Dels=0.00;FS=7.169;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.402;QD=18.38;ReadPosRankSum=4.359;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:7,97:104:99:1945,219,0 chrVII 192146 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.30;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1905,219,0 chrVII 192234 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.0024;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=10.48;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:1479,159,0 chrVII 192254 . T C 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.921;DP=123;Dels=0.00;FS=4.674;HaplotypeScore=27.9008;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=3.525;QD=10.91;ReadPosRankSum=4.348;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:13,110:123:94:1375,94,0 chrVII 192314 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=13.08;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1210,135,0 chrVII 192323 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=3.059;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=-0.472;QD=14.30;ReadPosRankSum=2.328;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1206,132,0 chrVII 192332 . G C 1204 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=14.16;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1237,141,0 chrVII 192348 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=14.78;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1112,123,0 chrVII 192722 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.01;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1596,171,0 chrVII 192839 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2625,282,0 chrVII 193025 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.20;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1992,210,0 chrVII 193366 . A G 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=6.954;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.689;QD=16.13;ReadPosRankSum=2.362;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1388,162,0 chrVII 193367 . G T 1543 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.15;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1576,168,0 chrVII 193460 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.08;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1451,159,0 chrVII 193476 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=17.32;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1297,147,0 chrVII 193477 . G A 1410 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.32;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1443,153,0 chrVII 193504 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.08;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1100,117,0 chrVII 193537 . T A 1566 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.82;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1599,180,0 chrVII 193564 . A C 1908 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.35;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1941,213,0 chrVII 193573 . G A 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.698;QD=19.43;ReadPosRankSum=-0.521;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2054,213,0 chrVII 193598 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.49;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2326,255,0 chrVII 193852 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.69;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1712,186,0 chrVII 194502 . T A 1133 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.88;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1166,126,0 chrVII 194841 . C T 809 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.74;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:39:93:842,93,0 chrVII 194880 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1197,132,0 chrVII 195096 . T G 851 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.06;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:884,99,0 chrVII 195543 . T C 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=90;Dels=0.00;FS=3.046;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.014;QD=18.87;ReadPosRankSum=2.339;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1731,195,0 chrVII 195692 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.61;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2006,213,0 chrVII 195843 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.915;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.703;QD=18.75;ReadPosRankSum=1.698;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1945,222,0 chrVII 195912 . A G 1007 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.03;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1040,117,0 chrVII 196614 . T C 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0934;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.684;QD=17.53;ReadPosRankSum=1.684;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1313,147,0 chrVII 197043 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=90;Dels=0.00;FS=2.878;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.042;QD=17.48;ReadPosRankSum=2.394;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1606,157,0 chrVII 197057 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.13;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1592,177,0 chrVII 197059 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=16.87;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1534,171,0 chrVII 197175 . T C 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=5.535;HaplotypeScore=2.7687;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.317;QD=17.62;ReadPosRankSum=1.658;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1672,192,0 chrVII 197180 . G A 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5239;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.354;QD=17.73;ReadPosRankSum=1.322;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1753,186,0 chrVII 197229 . C G 1253 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=16.06;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1286,147,0 chrVII 197247 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.63;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1602,171,0 chrVII 197942 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.03;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:737,81,0 chrVII 197989 . G A 664 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.13;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:697,72,0 chrVII 198003 . T A 548 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.22;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:581,63,0 chrVII 198476 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.731;QD=20.12;ReadPosRankSum=1.705;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2609,294,0 chrVII 198548 . C T 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=22.56;ReadPosRankSum=1.576;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2582,279,0 chrVII 198759 . T C 3129 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.88;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3162,351,0 chrVII 199120 . G T 3373.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.44;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3373,366,0 chrVII 199203 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2048,222,0 chrVII 199256 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.91;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1895,204,0 chrVII 199690 . A G 2238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=4.021;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.458;QD=21.11;ReadPosRankSum=1.699;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2271,258,0 chrVII 199882 . A G 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.845;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.295;QD=17.68;ReadPosRankSum=1.674;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2137,246,0 chrVII 199894 . A G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.472;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.622;QD=16.44;ReadPosRankSum=1.650;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2121,237,0 chrVII 200351 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.27;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2126,225,0 chrVII 200448 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.28;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1865,198,0 chrVII 200728 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.53;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2025,219,0 chrVII 200782 . T C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.721;DP=82;Dels=0.00;FS=11.047;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=1.085;QD=19.55;ReadPosRankSum=3.721;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1636,183,0 chrVII 200801 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.845;QD=20.84;ReadPosRankSum=1.690;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1742,192,0 chrVII 201093 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.57;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1651,177,0 chrVII 201324 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.82;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1539,177,0 chrVII 201499 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.54;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1245,138,0 chrVII 201788 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.77;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2006,213,0 chrVII 202082 . A T 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.196;QD=21.65;ReadPosRankSum=1.650;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1852,201,0 chrVII 202158 . T G 1152 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.74;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1185,132,0 chrVII 202475 . A G 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=4.771;HaplotypeScore=7.5705;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.929;QD=21.70;ReadPosRankSum=1.682;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1552,177,0 chrVII 202531 . T C 1169 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.3487;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.87;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1202,138,0 chrVII 202615 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.72;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1271,135,0 chrVII 202641 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.69;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1248,141,0 chrVII 202665 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.33;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1316,147,0 chrVII 203125 . T C 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.913;QD=22.47;ReadPosRankSum=1.695;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2123,240,0 chrVII 203987 . A T 469 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.04;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:502,54,0 chrVII 204002 . A G 440 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.33;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:54:473,54,0 chrVII 204055 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.72;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:779,87,0 chrVII 204092 . T G 811 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.53;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:844,93,0 chrVII 204113 . C T 778 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.31;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:811,87,0 chrVII 204186 . A G 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=41;Dels=0.00;FS=10.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.279;QD=17.41;ReadPosRankSum=2.327;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:2,38:41:87:747,87,0 chrVII 204202 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.14;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:899,96,0 chrVII 204226 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.35;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:807,87,0 chrVII 204321 . A G 732 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=22.18;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:765,87,0 chrVII 204339 . G A 634 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=23.48;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:667,72,0 chrVII 204358 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=22.14;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:852,93,0 chrVII 204618 . C A 889 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=0;QD=16.77;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:922,102,0 chrVII 204648 . T C 683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;MQRankSum=-0.653;QD=11.20;ReadPosRankSum=1.562;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:81:716,81,0 chrVII 204665 . T G 694 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=11.38;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:84:727,84,0 chrVII 204717 . G A 651 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=11.03;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:75:684,75,0 chrVII 204733 . C T 600 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=11.76;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:633,69,0 chrVII 204736 . A G 558 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=11.16;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:66:591,66,0 chrVII 204746 . T C 540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=2.864;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;MQRankSum=-0.132;QD=11.49;ReadPosRankSum=1.502;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:69:573,69,0 chrVII 204760 . T C 510 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=12.44;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:543,63,0 chrVII 204785 . T G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=57;Dels=0.00;FS=2.788;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.976;QD=17.09;ReadPosRankSum=2.364;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1007,111,0 chrVII 204825 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=21.82;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1779,207,0 chrVII 204867 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=20.33;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2188,228,0 chrVII 204881 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=16.46;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1663,186,0 chrVII 204927 . C T 578 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=92.8978;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=6.35;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:69:611,69,0 chrVII 204928 . G T 510 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=92.1091;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=5.73;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:66:543,66,0 chrVII 204931 . C G 444 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=92.1091;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=5.05;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:63:477,63,0 chrVII 204972 . G A 73.51 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=108.7369;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=0.58;SB=-8.745e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:12:106,12,0 chrVII 205098 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=16.45;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1234,141,0 chrVII 205114 . A T 1311 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=19.28;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1344,147,0 chrVII 205122 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=17.37;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1214,138,0 chrVII 205126 . A C 1110 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=16.09;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1143,135,0 chrVII 205152 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=13.05;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1077,123,0 chrVII 205170 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=14.74;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1419,162,0 chrVII 205215 . T C 2508 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=12.0226;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=17.18;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2541,279,0 chrVII 205307 . T A 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=4.135;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.273;QD=21.91;ReadPosRankSum=1.702;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2531,279,0 chrVII 205433 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.61;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1322,147,0 chrVII 205559 . C A 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;MQRankSum=1.685;QD=21.15;ReadPosRankSum=1.258;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1577,168,0 chrVII 205830 . T G 573 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.48;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:606,69,0 chrVII 206339 . G C 500 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=29.4283;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.67;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:533,60,0 chrVII 206526 . T C 662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.675;QD=18.91;ReadPosRankSum=2.310;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:81:695,81,0 chrVII 206645 . A T 296.08 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6739;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=1.631;QD=8.71;ReadPosRankSum=-0.102;SB=-2.361e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:20:329,20,0 chrVII 206716 . T C 621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-1.200;QD=15.52;ReadPosRankSum=1.644;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,38:40:75:654,75,0 chrVII 206722 . G A 663 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=15.79;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:696,75,0 chrVII 206738 . T C 499 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=11.34;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:60:532,60,0 chrVII 206906 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=79.7921;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.46;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1676,189,0 chrVII 207071 . T C 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.89;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,132,0 chrVII 207154 . A G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.543;QD=20.58;ReadPosRankSum=1.669;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1165,129,0 chrVII 207224 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.56;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1598,174,0 chrVII 207263 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.65;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1693,192,0 chrVII 207473 . T C 1075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.793;QD=18.22;ReadPosRankSum=1.674;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1108,123,0 chrVII 207551 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.99;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1439,162,0 chrVII 208005 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=77;Dels=0.00;FS=8.278;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.817;QD=21.04;ReadPosRankSum=2.322;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1653,183,0 chrVII 208034 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.09;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1969,222,0 chrVII 208043 . T A 2056 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.86;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2089,234,0 chrVII 208191 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.96;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,136:140:99:2968,315,0 chrVII 208340 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.66;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1376,159,0 chrVII 208469 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.76;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1528,165,0 chrVII 208580 . C A 1549 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.66;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1582,168,0 chrVII 208622 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.15;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1628,186,0 chrVII 208818 . A C 440 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=11.89;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:473,54,0 chrVII 208835 . G T 704 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=15.30;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:737,81,0 chrVII 208875 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.68;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1129,129,0 chrVII 208955 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.41;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1929,207,0 chrVII 208986 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.91;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1802,192,0 chrVII 209066 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.011;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.019;QD=22.43;ReadPosRankSum=1.681;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1558,177,0 chrVII 209443 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.4450;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.52;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1321,150,0 chrVII 209571 . C T 1148 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1181,129,0 chrVII 209671 . G T 1617 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.47;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1650,183,0 chrVII 210517 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.284;QD=22.34;ReadPosRankSum=1.681;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1552,177,0 chrVII 210538 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.19;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1305,147,0 chrVII 210785 . A G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=69;Dels=0.00;FS=3.029;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.161;QD=16.96;ReadPosRankSum=2.379;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1203,138,0 chrVII 210910 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.93;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2730,297,0 chrVII 210946 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.556;QD=22.14;ReadPosRankSum=1.700;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2446,276,0 chrVII 211015 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4118;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.85;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1993,222,0 chrVII 211576 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.35;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1854,198,0 chrVII 211975 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.34;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2014,222,0 chrVII 212216 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1427,159,0 chrVII 212554 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.0074;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.94;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2116,228,0 chrVII 212679 . A T 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.432;QD=19.90;ReadPosRankSum=2.368;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1227,132,0 chrVII 212731 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.68;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1471,165,0 chrVII 212869 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.73;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1860,201,0 chrVII 213113 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5717;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.95;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1805,201,0 chrVII 213175 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.44;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2025,216,0 chrVII 213411 . C A 2039 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.69;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2072,222,0 chrVII 213927 . A G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=4.973;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.079;QD=19.68;ReadPosRankSum=1.654;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:899,105,0 chrVII 214110 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.01;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1483,162,0 chrVII 214440 . G A 2547 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.88;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2580,279,0 chrVII 214473 . G C 2403 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0137;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.19;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2436,282,0 chrVII 214758 . C G 2329 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.93;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2362,273,0 chrVII 214822 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.46;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2548,270,0 chrVII 214926 . C T 2498 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.53;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2531,282,0 chrVII 215210 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.53;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2423,264,0 chrVII 215394 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.23;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1552,174,0 chrVII 215404 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.39;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1394,159,0 chrVII 215575 . A G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.325;QD=17.43;ReadPosRankSum=1.630;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1218,138,0 chrVII 215826 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.97;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1270,138,0 chrVII 215900 . T C 764 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.59;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:797,87,0 chrVII 215909 . C T 727 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.31;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:81:760,81,0 chrVII 216083 . G A 942 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:975,105,0 chrVII 216207 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.40;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1601,180,0 chrVII 216267 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.78;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1878,216,0 chrVII 216479 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1518,171,0 chrVII 216869 . A G 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.559;QD=15.80;ReadPosRankSum=1.675;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:981,111,0 chrVII 216966 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.8699;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.41;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2252,240,0 chrVII 217019 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=6.870;HaplotypeScore=9.8322;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.344;QD=23.25;ReadPosRankSum=1.603;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2521,279,0 chrVII 217121 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.38;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2492,282,0 chrVII 217358 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.771;HaplotypeScore=8.1839;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.567;QD=19.61;ReadPosRankSum=1.705;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2523,288,0 chrVII 217417 . G C 2193 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.76;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2226,249,0 chrVII 217461 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.99;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1894,216,0 chrVII 217670 . T A 2022 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.98;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2055,225,0 chrVII 217727 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.97;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1740,195,0 chrVII 217800 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1217,138,0 chrVII 217847 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.63;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1466,168,0 chrVII 218139 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.49;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1495,162,0 chrVII 218213 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.58;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1414,150,0 chrVII 218390 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.59;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1501,159,0 chrVII 218468 . A T 1199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.17;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1232,135,0 chrVII 218492 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.47;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1302,147,0 chrVII 218628 . T C 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.097;QD=21.38;ReadPosRankSum=1.617;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1316,147,0 chrVII 218669 . A G 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=67;Dels=0.00;FS=8.274;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.251;QD=20.99;ReadPosRankSum=2.373;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:2,62:67:99:1439,165,0 chrVII 218745 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.97;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2445,267,0 chrVII 218949 . C A 1332 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.53;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1365,150,0 chrVII 218961 . T G 1231 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.34;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1264,141,0 chrVII 219119 . A G 2080 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.57;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2113,234,0 chrVII 219263 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=7.661;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.203;QD=20.42;ReadPosRankSum=2.388;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1646,192,0 chrVII 219322 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=2.932;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.777;QD=20.02;ReadPosRankSum=2.375;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1354,153,0 chrVII 219563 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.04;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1518,177,0 chrVII 219626 . T C 1291 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.86;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1324,150,0 chrVII 219733 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.39;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1583,177,0 chrVII 219776 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.40;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1352,144,0 chrVII 219779 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.06;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1291,147,0 chrVII 219792 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.94;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1302,144,0 chrVII 219956 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.17;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2327,261,0 chrVII 219971 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.21;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1983,225,0 chrVII 220064 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.84;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1408,159,0 chrVII 220121 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.11;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1173,129,0 chrVII 220229 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=93;Dels=0.00;FS=2.699;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.887;QD=18.37;ReadPosRankSum=2.317;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1741,195,0 chrVII 220380 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.40;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1624,180,0 chrVII 220475 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.53;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1655,183,0 chrVII 220519 . G A 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=5.836;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.632;QD=23.60;ReadPosRankSum=1.180;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1685,183,0 chrVII 220655 . T G 2013 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.54;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2046,234,0 chrVII 220697 . C A 2433 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.74;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2466,261,0 chrVII 220747 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.87;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2297,246,0 chrVII 220760 . G C 2325 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=18.9811;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.49;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,131:141:99:2358,276,0 chrVII 220877 . T A 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=4.455;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.307;QD=20.14;ReadPosRankSum=1.667;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2188,237,0 chrVII 220928 . C A 2586 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.59;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2619,294,0 chrVII 221031 . A G 5518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=234;Dels=0.00;FS=3.239;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.125;QD=23.58;ReadPosRankSum=1.717;SB=-2.871e+03 GT:AD:DP:GQ:PL 1/1:1,233:234:99:5518,615,0 chrVII 221066 . C A 3976.01 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=23.12;SB=-1.945e+03 GT:AD:DP:GQ:PL 1/1:1,171:172:99:3976,432,0 chrVII 221407 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.093;DP=105;Dels=0.00;FS=10.954;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.932;QD=20.78;ReadPosRankSum=3.914;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:6,99:105:99:2215,252,0 chrVII 221698 . A G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.563;QD=16.65;ReadPosRankSum=1.689;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1382,156,0 chrVII 221962 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.13;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1871,201,0 chrVII 221994 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.23;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1380,150,0 chrVII 222046 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.93;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1428,153,0 chrVII 222140 . G T 1598 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.02;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1631,174,0 chrVII 222215 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=12.6855;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.36;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1722,189,0 chrVII 222244 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.62;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1720,186,0 chrVII 222265 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.18;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1473,165,0 chrVII 222592 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.531;QD=21.75;ReadPosRankSum=1.682;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1534,171,0 chrVII 222691 . A G 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.512;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.039;QD=21.52;ReadPosRankSum=1.679;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1432,162,0 chrVII 223151 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;DP=65;Dels=0.00;FS=2.952;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.576;QD=21.09;ReadPosRankSum=2.374;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1404,162,0 chrVII 223273 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.47;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1252,135,0 chrVII 223275 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.00;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1401,150,0 chrVII 223507 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.15;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1645,177,0 chrVII 223550 . T C 1619 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.74;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1652,183,0 chrVII 223605 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.9480;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.08;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1599,168,0 chrVII 223642 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.56;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1592,177,0 chrVII 223742 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.53;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1627,177,0 chrVII 223861 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.78;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2102,225,0 chrVII 223948 . A G 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=5.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.565;QD=22.37;ReadPosRankSum=1.657;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2091,234,0 chrVII 224029 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.14;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1915,204,0 chrVII 224467 . G C 1432 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.25;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1465,168,0 chrVII 224828 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=14.91;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:2628,285,0 chrVII 224869 . G A 1104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.088;DP=184;Dels=0.00;FS=26.961;HaplotypeScore=139.0432;MLEAC=1;MLEAF=0.500;MQ=43.56;MQ0=0;MQRankSum=-1.862;QD=6.00;ReadPosRankSum=-2.949;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:99,83:184:99:1134,0,488 chrVII 224881 . A G 195.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590;DP=180;Dels=0.00;FS=12.862;HaplotypeScore=130.2168;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=0;MQRankSum=-5.693;QD=1.08;ReadPosRankSum=-2.142;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:139,41:180:99:225,0,1274 chrVII 224909 . C T 346 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=2.49;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:42:379,42,0 chrVII 224983 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=15.34;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2089,234,0 chrVII 224994 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.69;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2191,249,0 chrVII 225389 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.64;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1624,174,0 chrVII 225502 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.70;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1609,174,0 chrVII 225550 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.619;QD=19.50;ReadPosRankSum=1.701;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2217,255,0 chrVII 225598 . C G 2534 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.9302;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.27;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2567,294,0 chrVII 225759 . A G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.764;QD=17.87;ReadPosRankSum=-0.130;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1695,176,0 chrVII 226152 . C T 2961 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.69;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2994,324,0 chrVII 226182 . T C 2629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.9177;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.136;QD=21.37;ReadPosRankSum=1.704;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2662,309,0 chrVII 226396 . G A 3148 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=14.1161;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.56;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3181,342,0 chrVII 226920 . T C 2353 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.20;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2386,270,0 chrVII 226965 . T C 2247 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.88;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2280,255,0 chrVII 226986 . C G 1959 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.48;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1992,225,0 chrVII 227025 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.627;QD=17.57;ReadPosRankSum=2.379;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1860,207,0 chrVII 227172 . C G 2035 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1029;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.84;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2068,231,0 chrVII 227523 . T C 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=7.579;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.302;QD=16.62;ReadPosRankSum=1.677;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1080,120,0 chrVII 228148 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.25;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1823,192,0 chrVII 228350 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=17.40;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1843,195,0 chrVII 228403 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=16.06;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1414,159,0 chrVII 228543 . T C 739 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.60;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:772,87,0 chrVII 228646 . G T 1510 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1543,165,0 chrVII 228739 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1987,210,0 chrVII 228776 . G C 2061 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:2094,240,0 chrVII 229027 . A T 1735 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1768,192,0 chrVII 229174 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.86;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2153,228,0 chrVII 229302 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.18;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1791,198,0 chrVII 229399 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.01;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1942,219,0 chrVII 229638 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=3.716;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.779;QD=17.40;ReadPosRankSum=1.703;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2121,234,0 chrVII 229770 . A G 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=86;Dels=0.00;FS=2.729;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.989;QD=19.91;ReadPosRankSum=2.393;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1745,195,0 chrVII 230072 . A G 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.192;QD=20.47;ReadPosRankSum=1.689;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1691,192,0 chrVII 230207 . A G 2941 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.79;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2974,345,0 chrVII 230572 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0249;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.73;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1717,186,0 chrVII 230648 . A C 2004 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=16.16;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2037,234,0 chrVII 230701 . C T 2372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.8572;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=21.37;ReadPosRankSum=0.469;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2405,264,0 chrVII 230742 . A G 2189 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2222,249,0 chrVII 231071 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1408,150,0 chrVII 231224 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.086;QD=19.46;ReadPosRankSum=1.497;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1181,132,0 chrVII 231415 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1208,129,0 chrVII 231712 . A G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.882;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.365;QD=21.95;ReadPosRankSum=1.680;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1482,168,0 chrVII 232073 . C G 2100 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.65;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2133,240,0 chrVII 232321 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.018;QD=22.22;ReadPosRankSum=1.661;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2188,249,0 chrVII 232352 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.86;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1957,210,0 chrVII 232615 . T A 2041 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.62;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2074,222,0 chrVII 232673 . C T 2214 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.89;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2247,243,0 chrVII 232885 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=95;Dels=0.00;FS=9.928;HaplotypeScore=12.6677;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=2.238;QD=16.22;ReadPosRankSum=2.370;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,91:95:99:1574,177,0 chrVII 232997 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2793;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.31;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1972,210,0 chrVII 233677 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.91;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1427,153,0 chrVII 233683 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.73;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1203,129,0 chrVII 233752 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.41;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1372,147,0 chrVII 234279 . G C 1749 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1782,204,0 chrVII 234578 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=6.9903;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.698;QD=20.83;ReadPosRankSum=1.564;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2178,246,0 chrVII 234801 . A G 2732 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2765,312,0 chrVII 235227 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.85;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1782,201,0 chrVII 235392 . C T 3075 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.75;SB=-1.744e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3108,336,0 chrVII 235464 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.84;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2096,240,0 chrVII 235596 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2254,240,0 chrVII 236277 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.34;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1351,147,0 chrVII 236530 . A C 1468 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1501,171,0 chrVII 236710 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.13;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1544,168,0 chrVII 236862 . A C 1504 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.34;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1537,174,0 chrVII 237052 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.92;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:929,105,0 chrVII 237114 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.78;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1242,138,0 chrVII 237133 . T C 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=4.221;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.311;QD=16.65;ReadPosRankSum=1.685;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1282,147,0 chrVII 237207 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.70;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1219,135,0 chrVII 237218 . A G 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.626;QD=18.82;ReadPosRankSum=1.684;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1388,156,0 chrVII 237523 . A G 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=7.833;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.432;QD=22.24;ReadPosRankSum=2.256;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1167,132,0 chrVII 237668 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1300,147,0 chrVII 237697 . T C 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.342;QD=21.01;ReadPosRankSum=1.683;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1525,174,0 chrVII 237739 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.86;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1681,195,0 chrVII 238309 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.56;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1187,132,0 chrVII 238358 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.09;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1226,141,0 chrVII 238828 . T C 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.014;DP=86;Dels=0.00;FS=2.799;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.623;QD=18.10;ReadPosRankSum=2.160;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1590,177,0 chrVII 238829 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=2.901;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.651;QD=18.09;ReadPosRankSum=2.394;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1661,186,0 chrVII 238995 . C A 2401 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.44;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2434,261,0 chrVII 239108 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.372;HaplotypeScore=5.1781;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.033;QD=17.51;ReadPosRankSum=1.566;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1854,207,0 chrVII 239207 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.66;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2156,237,0 chrVII 239625 . A T 1652 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1685,180,0 chrVII 239681 . A G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=80;Dels=0.00;FS=10.444;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.500;QD=21.59;ReadPosRankSum=2.911;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:3,76:80:99:1760,198,0 chrVII 239783 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.57;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1649,174,0 chrVII 239787 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.08;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1587,171,0 chrVII 239996 . C G 1582 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1615,186,0 chrVII 240095 . A T 1480 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.56;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1513,159,0 chrVII 240383 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.83;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1540,165,0 chrVII 241162 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.39;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1399,159,0 chrVII 241508 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.47;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1407,159,0 chrVII 241536 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=19.28;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1209,129,0 chrVII 241719 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1263,144,0 chrVII 242121 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2071;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.12;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:906,102,0 chrVII 242295 . T A 1297 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.98;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1330,144,0 chrVII 242979 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1337,153,0 chrVII 243089 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.71;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2352,252,0 chrVII 243858 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.3810;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.49;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2192,237,0 chrVII 243903 . T C 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=95;Dels=0.00;FS=3.045;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.993;QD=21.91;ReadPosRankSum=2.397;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:3,91:95:99:2114,237,0 chrVII 244125 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.34;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3085,348,0 chrVII 244314 . A T 1779 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.94;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1812,201,0 chrVII 244800 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2632;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.25;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2439,273,0 chrVII 245422 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.81;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1162,126,0 chrVII 245694 . G T 919 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=12.76;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:952,105,0 chrVII 245764 . A G 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=5.441;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.567;QD=16.34;ReadPosRankSum=1.677;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1079,120,0 chrVII 245770 . T C 1029 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.74;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1062,117,0 chrVII 246459 . A C 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.374;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=15.3642;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.493;QD=16.74;ReadPosRankSum=1.653;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1523,168,0 chrVII 248010 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.27;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1440,156,0 chrVII 248177 . C A 390 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=14.44;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:45:423,45,0 chrVII 248225 . G C 360 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=12.41;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:393,45,0 chrVII 248236 . A T 426 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=12.91;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:459,51,0 chrVII 248886 . A T 1836 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.86;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1869,204,0 chrVII 249040 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.07;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1157,123,0 chrVII 249058 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.90;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1148,129,0 chrVII 249639 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=8.684;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.559;QD=22.66;ReadPosRankSum=2.407;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2684,306,0 chrVII 250079 . T C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.277;QD=21.07;ReadPosRankSum=1.663;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2140,243,0 chrVII 250183 . C A 1693 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.90;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1726,183,0 chrVII 250680 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.95;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1965,213,0 chrVII 251742 . C T 3547.01 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=9.1234;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.99;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3547,384,0 chrVII 252024 . C T 1264 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.85;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1297,141,0 chrVII 252272 . G C 1113 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.19;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1146,129,0 chrVII 252274 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.58;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1165,120,0 chrVII 252343 . T C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6860;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.136;QD=21.12;ReadPosRankSum=1.695;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2018,228,0 chrVII 252406 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.43;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2219,252,0 chrVII 252410 . C A 2257 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.91;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2290,240,0 chrVII 252804 . A T 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.064;QD=18.90;ReadPosRankSum=1.540;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2112,237,0 chrVII 252951 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.34;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1485,162,0 chrVII 253383 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.03;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1916,204,0 chrVII 253692 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=13.9379;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.10;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1784,189,0 chrVII 253849 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.61;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1579,180,0 chrVII 253915 . A T 952 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.00;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:985,105,0 chrVII 253916 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=15.65;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:925,105,0 chrVII 253953 . A G 655 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=15.60;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:688,75,0 chrVII 254069 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.41;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1489,168,0 chrVII 254092 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=18.12;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1356,147,0 chrVII 254134 . G T 844 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=12.79;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:877,96,0 chrVII 254139 . T C 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-0.509;QD=12.72;ReadPosRankSum=1.681;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:911,102,0 chrVII 254177 . A G 679 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=11.13;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:78:712,78,0 chrVII 254184 . T A 793 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=12.79;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:87:826,87,0 chrVII 254193 . T A 722 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=12.03;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:81:755,81,0 chrVII 254273 . C A 1044 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.70;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1077,117,0 chrVII 254298 . T C 838 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=17.46;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:871,96,0 chrVII 254318 . G A 445 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=14.35;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:51:478,51,0 chrVII 254344 . C G 616 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=15.02;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:649,75,0 chrVII 254363 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=17.32;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:726,78,0 chrVII 254373 . T C 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=42;Dels=0.00;FS=3.928;HaplotypeScore=36.2630;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-1.403;QD=14.40;ReadPosRankSum=1.650;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:72:638,72,0 chrVII 254489 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=20.14;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1523,171,0 chrVII 254952 . T C 1856.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.089;DP=119;Dels=0.00;FS=1.123;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=4.555;QD=15.60;ReadPosRankSum=0.180;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:13,105:119:4:1887,4,0 chrVII 255210 . T C 715.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;DP=117;Dels=0.00;FS=69.693;HaplotypeScore=11.8737;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=28;MQRankSum=3.573;QD=6.11;ReadPosRankSum=-0.584;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:48,68:117:85:745,0,85 chrVII 256325 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.36;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1446,162,0 chrVII 256385 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1570,171,0 chrVII 256478 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.69;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1572,177,0 chrVII 256538 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1586,180,0 chrVII 257078 . A T 1308 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4415;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.52;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1341,144,0 chrVII 257122 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=4.260;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.353;QD=21.42;ReadPosRankSum=1.678;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1404,159,0 chrVII 257195 . A G 1295 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.58;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1328,150,0 chrVII 257319 . T A 951 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.29;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:984,108,0 chrVII 257331 . T C 860 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=15.09;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:893,102,0 chrVII 257715 . A G 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.115;QD=22.04;ReadPosRankSum=1.655;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1025,117,0 chrVII 258270 . T A 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.245;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.595;QD=22.42;ReadPosRankSum=1.641;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1737,192,0 chrVII 258772 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1260,135,0 chrVII 258958 . A G 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.137;QD=20.51;ReadPosRankSum=1.687;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1592,177,0 chrVII 259125 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.4718;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.30;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1535,171,0 chrVII 259222 . C T 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.752;QD=19.75;ReadPosRankSum=0.948;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1080,117,0 chrVII 259380 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.18;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1674,189,0 chrVII 259491 . G T 1164 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.19;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1197,135,0 chrVII 259594 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:936,102,0 chrVII 260137 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.22;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1412,153,0 chrVII 260198 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1424,159,0 chrVII 260886 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.11;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1745,189,0 chrVII 261126 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.28;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2081,228,0 chrVII 261327 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.30;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1003,111,0 chrVII 261737 . G T 2057 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.09;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2090,222,0 chrVII 261844 . A T 2459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=125;Dels=0.00;FS=3.046;HaplotypeScore=10.8189;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.437;QD=19.67;ReadPosRankSum=1.704;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2492,267,0 chrVII 261966 . T C 2109 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.88;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2142,237,0 chrVII 262041 . T C 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.042;QD=20.87;ReadPosRankSum=1.676;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2621,303,0 chrVII 262200 . A T 2954 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.3731;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.66;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2987,327,0 chrVII 262283 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.564;QD=20.46;ReadPosRankSum=1.090;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2570,294,0 chrVII 262340 . G T 2520 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.84;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2553,276,0 chrVII 262671 . A C 2295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.00;FS=3.472;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.669;QD=20.49;ReadPosRankSum=1.669;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,108:112:99:2328,264,0 chrVII 262798 . G C 1914 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.6564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1947,219,0 chrVII 262950 . T A 2168 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.65;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2201,237,0 chrVII 262977 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.68;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2225,237,0 chrVII 263121 . A C 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.36;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1756,198,0 chrVII 263233 . G T 1702 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.2628;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.27;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1735,186,0 chrVII 263382 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.36;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1723,189,0 chrVII 263421 . T C 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.043;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.061;QD=21.17;ReadPosRankSum=2.401;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2171,243,0 chrVII 263571 . A G 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.958;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.781;QD=22.32;ReadPosRankSum=1.664;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2310,255,0 chrVII 263642 . A T 1876 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.81;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1909,207,0 chrVII 263678 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1854,198,0 chrVII 263851 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.37;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1642,174,0 chrVII 263909 . C T 2418 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.21;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2451,261,0 chrVII 263981 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.9801;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.37;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2042,219,0 chrVII 264114 . C A 868 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:96:901,96,0 chrVII 264177 . G T 1090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.46;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1123,120,0 chrVII 264360 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.43;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1510,165,0 chrVII 264482 . G T 1301 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.7157;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.02;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1334,147,0 chrVII 264652 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2243,237,0 chrVII 265218 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=80;Dels=0.00;FS=5.349;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.143;QD=21.42;ReadPosRankSum=3.344;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:99:1747,192,0 chrVII 265436 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2028,225,0 chrVII 265689 . C G 1175 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.26;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1208,138,0 chrVII 266074 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.33;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1886,201,0 chrVII 266080 . T A 1724 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.52;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1757,186,0 chrVII 266087 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.296;QD=18.49;ReadPosRankSum=-0.296;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1549,174,0 chrVII 266369 . G C 2134 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.58;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2167,243,0 chrVII 266948 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.56;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1348,144,0 chrVII 267395 . T G 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.597;DP=60;Dels=0.00;FS=80.829;HaplotypeScore=6.2574;MLEAC=1;MLEAF=0.500;MQ=57.33;MQ0=0;MQRankSum=-0.494;QD=2.00;ReadPosRankSum=-4.491;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,22:60:99:150,0,586 chrVII 267434 . G C 908 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.53;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:941,105,0 chrVII 267458 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.02;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1132,120,0 chrVII 267480 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=14.66;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1074,120,0 chrVII 267759 . T C 2397 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.50;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2430,270,0 chrVII 268323 . C G 896 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.06;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:929,105,0 chrVII 269104 . T A 1647 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=16.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1680,183,0 chrVII 269337 . C T 1522 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1555,168,0 chrVII 269505 . T C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.865;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.515;QD=24.47;ReadPosRankSum=2.325;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1966,216,0 chrVII 269587 . A C 2040 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.61;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2073,237,0 chrVII 269881 . A G 2960 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.93;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2993,348,0 chrVII 269908 . C G 2806 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.94;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2839,327,0 chrVII 270046 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.22;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1053,120,0 chrVII 270491 . A G 950 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.79;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:983,114,0 chrVII 270506 . C T 647 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.17;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:680,75,0 chrVII 270688 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.67;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1545,177,0 chrVII 270975 . T C 2325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.656;QD=22.36;ReadPosRankSum=1.665;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2358,264,0 chrVII 271422 . T C 2082 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.02;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2115,240,0 chrVII 271683 . A G 2860 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.52;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2893,318,0 chrVII 272144 . G A 752 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:87:785,87,0 chrVII 272666 . A G 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=4.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.048;QD=21.76;ReadPosRankSum=1.636;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1600,180,0 chrVII 273125 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.72;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1597,171,0 chrVII 273347 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.22;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1272,144,0 chrVII 273408 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.91;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2061,234,0 chrVII 273503 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.96;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1590,180,0 chrVII 273662 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.96;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1470,156,0 chrVII 273689 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.48;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1530,165,0 chrVII 273899 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=106;Dels=0.00;FS=3.019;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.231;QD=20.16;ReadPosRankSum=2.259;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:2170,234,0 chrVII 273905 . G A 2323 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.03;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2356,258,0 chrVII 274448 . A C 478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.313;QD=14.48;ReadPosRankSum=1.628;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:57:511,57,0 chrVII 274486 . T C 478 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=14.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:57:511,57,0 chrVII 274522 . C T 457 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=24.2769;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=15.76;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:51:490,51,0 chrVII 274544 . C T 685 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.03;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:75:718,75,0 chrVII 274741 . T A 813 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.606;QD=20.32;ReadPosRankSum=1.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:90:846,90,0 chrVII 274742 . T A 816 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;MQRankSum=-0.042;QD=19.90;ReadPosRankSum=1.648;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,40:41:90:849,90,0 chrVII 274754 . T G 924 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.013;QD=17.43;ReadPosRankSum=1.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:99:957,108,0 chrVII 274882 . C G 1483 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1516,171,0 chrVII 275009 . T C 1265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.986;QD=19.46;ReadPosRankSum=1.679;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1298,150,0 chrVII 275021 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.63;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1312,150,0 chrVII 275242 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.38;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1589,174,0 chrVII 275322 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.98;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1945,207,0 chrVII 275428 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=16.82;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1059,123,0 chrVII 275443 . A G 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.395;QD=16.41;ReadPosRankSum=1.611;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:985,111,0 chrVII 275467 . C T 1013 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.61;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1046,111,0 chrVII 275482 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=17.33;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1125,126,0 chrVII 275618 . T C 1007 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.98;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:1040,117,0 chrVII 275692 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=15.43;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:928,105,0 chrVII 275701 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.14;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:969,108,0 chrVII 275734 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.56;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1148,123,0 chrVII 275758 . A G 880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.585;QD=18.72;ReadPosRankSum=1.659;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:913,102,0 chrVII 275782 . T C 902 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.79;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:935,105,0 chrVII 275819 . C G 1002 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.45;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1035,117,0 chrVII 276180 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.60;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1437,153,0 chrVII 276361 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.19;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1634,174,0 chrVII 276379 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=15.96;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1246,141,0 chrVII 276429 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.27;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1416,159,0 chrVII 276433 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=15.95;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1405,156,0 chrVII 276488 . G T 1770 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.63;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1803,198,0 chrVII 276866 . T G 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.747;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.334;QD=20.50;ReadPosRankSum=1.700;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2268,252,0 chrVII 277086 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.74;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1568,171,0 chrVII 277146 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.83;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1560,174,0 chrVII 277224 . G C 1253 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.06;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1286,144,0 chrVII 277287 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.43;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1452,168,0 chrVII 278171 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.78;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1543,171,0 chrVII 278686 . T C 1136 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1169,135,0 chrVII 278844 . C G 917 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:99:950,105,0 chrVII 278904 . G A 1394 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1427,150,0 chrVII 279137 . T G 1385 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.98;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1418,162,0 chrVII 279372 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.20;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1689,183,0 chrVII 279435 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.49;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1592,171,0 chrVII 279771 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.8378;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.33;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1953,213,0 chrVII 279936 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.58;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1389,150,0 chrVII 279942 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.16;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1413,150,0 chrVII 280080 . A C 63.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=-0.964;QD=3.53;ReadPosRankSum=1.542;SB=-1.845e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:12:96,12,0 chrVII 280415 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=3.332;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.114;QD=16.25;ReadPosRankSum=1.650;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1414,156,0 chrVII 280546 . T G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=61;Dels=0.00;FS=5.330;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.418;QD=17.77;ReadPosRankSum=1.673;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,57:61:99:1117,126,0 chrVII 280575 . A G 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-1.676;QD=18.68;ReadPosRankSum=1.676;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1191,138,0 chrVII 280634 . A T 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.232;QD=19.38;ReadPosRankSum=1.696;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1932,210,0 chrVII 280915 . A G 989 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.18;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1022,114,0 chrVII 281206 . A G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=85;Dels=0.00;FS=5.544;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.036;QD=20.88;ReadPosRankSum=2.917;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1808,204,0 chrVII 281269 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.78;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1051,111,0 chrVII 281283 . C G 878 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.95;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:911,102,0 chrVII 281302 . A T 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.549;QD=19.76;ReadPosRankSum=1.648;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:90:843,90,0 chrVII 281475 . C T 438 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:471,54,0 chrVII 281515 . G T 1199 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1232,141,0 chrVII 281690 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.64;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1593,180,0 chrVII 281913 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.77;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1217,141,0 chrVII 282117 . A G 2594 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6733;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.26;SB=-1.601e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2627,291,0 chrVII 282222 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.777;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.699;QD=21.61;ReadPosRankSum=1.699;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2324,267,0 chrVII 282456 . G C 1587 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.84;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1620,186,0 chrVII 282702 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=2.807;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.195;QD=20.35;ReadPosRankSum=2.390;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1702,195,0 chrVII 282831 . G C 1821 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.48;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1854,204,0 chrVII 283008 . T C 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.102;QD=21.14;ReadPosRankSum=1.693;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1893,216,0 chrVII 283107 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.07;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1997,216,0 chrVII 283173 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.68;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1832,192,0 chrVII 283179 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.95;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1757,186,0 chrVII 283275 . T C 2218 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.35;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2251,252,0 chrVII 283332 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.39;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1746,195,0 chrVII 283431 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.36;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2019,219,0 chrVII 283608 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.06;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:93:99:2085,222,0 chrVII 283970 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.67;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1174,126,0 chrVII 284038 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.03;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1505,171,0 chrVII 284172 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1893,204,0 chrVII 284212 . C G 1256 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.93;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1289,144,0 chrVII 284273 . A G 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.434;QD=16.10;ReadPosRankSum=1.673;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:967,111,0 chrVII 284280 . A C 1061 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.29;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1094,123,0 chrVII 284354 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.95;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1939,216,0 chrVII 284614 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.008;QD=20.58;ReadPosRankSum=1.681;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1412,156,0 chrVII 284675 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.30;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1941,216,0 chrVII 284855 . A G 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=3.393;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.480;QD=22.55;ReadPosRankSum=1.690;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1927,219,0 chrVII 284996 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.24;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1345,144,0 chrVII 285065 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1329,150,0 chrVII 285848 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.43;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:993,111,0 chrVII 286047 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.13;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1781,195,0 chrVII 286057 . G T 1675 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5301;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.47;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1708,183,0 chrVII 286154 . G C 822 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.27;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:855,96,0 chrVII 286162 . G A 788 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=17.91;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:87:821,87,0 chrVII 286164 . C G 717 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.59;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:84:750,84,0 chrVII 286173 . A T 607 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=13.49;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:640,69,0 chrVII 286558 . A T 3233.06 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.77;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3267,351,0 chrVII 286632 . A G 2399 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2432,270,0 chrVII 286754 . A G 2896 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.14;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,133:137:99:2929,330,0 chrVII 286802 . G A 2810 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=22.48;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2843,315,0 chrVII 286921 . G A 4204.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=24.30;SB=-2.184e+03 GT:AD:DP:GQ:PL 1/1:0,173:173:99:4204,453,0 chrVII 287075 . G A 2671 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.26;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2704,285,0 chrVII 287244 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=11.00;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:93:847,93,0 chrVII 287258 . C T 778 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=12.35;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:87:811,87,0 chrVII 287266 . G A 747 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=12.88;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:780,84,0 chrVII 287278 . A G 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=0.717;QD=11.41;ReadPosRankSum=1.673;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:78:706,78,0 chrVII 287286 . G T 666 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=10.74;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:75:699,75,0 chrVII 287340 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=45.5034;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=13.42;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:798,84,0 chrVII 287520 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.45;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1200,132,0 chrVII 287579 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=23.09;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1557,165,0 chrVII 287631 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.95;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2045,219,0 chrVII 287675 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=20.32;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1760,192,0 chrVII 287679 . T G 1676 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=20.69;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1709,198,0 chrVII 287846 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.76;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1121,123,0 chrVII 287936 . G T 1814 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.26;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1847,198,0 chrVII 287949 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.44;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1689,192,0 chrVII 288017 . T C 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=3.840;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.301;QD=19.59;ReadPosRankSum=1.694;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1835,210,0 chrVII 288075 . T C 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.598;QD=19.87;ReadPosRankSum=1.669;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1146,129,0 chrVII 288085 . G C 1065 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.02;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1098,126,0 chrVII 288169 . C A 972 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.05;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1005,111,0 chrVII 288473 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.84;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1860,198,0 chrVII 288616 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.98;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1741,195,0 chrVII 288796 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.5803;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.29;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2328,252,0 chrVII 288805 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.21;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2155,231,0 chrVII 289212 . T C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=6.214;HaplotypeScore=9.8336;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.452;QD=20.80;ReadPosRankSum=1.619;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1988,225,0 chrVII 289440 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.701;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.357;QD=22.20;ReadPosRankSum=1.630;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1565,174,0 chrVII 289648 . A T 1908 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.44;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1941,210,0 chrVII 289886 . A C 1291 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.82;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1324,147,0 chrVII 289892 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.37;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1195,135,0 chrVII 289991 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.22;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1120,126,0 chrVII 290162 . G C 2453 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.44;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2486,282,0 chrVII 290846 . T C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=7.034;HaplotypeScore=8.2019;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.442;QD=17.91;ReadPosRankSum=2.342;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,112:116:99:2110,240,0 chrVII 290867 . A G 2294 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.78;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2327,264,0 chrVII 291088 . C G 2503 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.11;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2536,285,0 chrVII 291260 . G A 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.1644;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.196;QD=18.83;ReadPosRankSum=-1.111;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2048,225,0 chrVII 291643 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=63.4897;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=14.65;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1161,132,0 chrVII 291925 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.80;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2039,228,0 chrVII 291992 . G A 2762 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.27;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2795,306,0 chrVII 292374 . T G 1929 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1962,216,0 chrVII 292839 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2179,237,0 chrVII 293305 . A G 1899 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.42;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1932,219,0 chrVII 293517 . G T 2035 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.35;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2068,222,0 chrVII 294227 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.563;QD=20.95;ReadPosRankSum=1.689;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,79:84:99:1793,201,0 chrVII 294308 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.19;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2120,225,0 chrVII 294404 . T C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.249;QD=19.60;ReadPosRankSum=2.371;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1875,216,0 chrVII 294462 . A G 1747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.928;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.949;QD=20.80;ReadPosRankSum=1.691;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1780,201,0 chrVII 294683 . C T 2677 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.48;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2710,291,0 chrVII 295562 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.79;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1104,120,0 chrVII 295605 . C G 778 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.21;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:811,93,0 chrVII 295612 . T C 736 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.36;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:87:769,87,0 chrVII 295711 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1560,174,0 chrVII 296177 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.70;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1668,177,0 chrVII 296192 . T G 1301 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.02;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1334,150,0 chrVII 296304 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1248,132,0 chrVII 296534 . A G 996 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=15.09;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1029,117,0 chrVII 297102 . G T 1589 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.11;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1622,171,0 chrVII 297191 . A C 1942 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.40;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1975,219,0 chrVII 297260 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.66;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1748,198,0 chrVII 297365 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.18;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1269,138,0 chrVII 297386 . G C 858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.82;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:891,96,0 chrVII 297392 . C A 842 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=16.19;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:96:875,96,0 chrVII 297805 . A C 1361 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.72;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1394,156,0 chrVII 297820 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.957;QD=19.82;ReadPosRankSum=1.595;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1539,171,0 chrVII 299192 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.69;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1696,192,0 chrVII 299630 . C G 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.77;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1757,201,0 chrVII 299945 . T A 1445 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1478,165,0 chrVII 300865 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.742;QD=19.37;ReadPosRankSum=1.683;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1408,159,0 chrVII 300904 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7884;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.47;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1268,144,0 chrVII 300910 . C T 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1242;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.451;QD=16.53;ReadPosRankSum=1.068;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1256,138,0 chrVII 301132 . G C 1860 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.90;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1893,213,0 chrVII 301260 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.53;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1655,174,0 chrVII 301324 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.86;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1347,144,0 chrVII 301405 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.877;QD=20.32;ReadPosRankSum=1.687;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1598,180,0 chrVII 301525 . T A 1350 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=61.8564;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.57;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1383,153,0 chrVII 301606 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.20;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1168,132,0 chrVII 302319 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.273;QD=18.27;ReadPosRankSum=1.690;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1549,171,0 chrVII 302725 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1081,120,0 chrVII 302788 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.34;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1420,153,0 chrVII 303497 . T C 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=79;Dels=0.00;FS=2.616;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=2.105;QD=21.80;ReadPosRankSum=2.858;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:3,75:79:99:1755,201,0 chrVII 303645 . T C 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.156;QD=21.06;ReadPosRankSum=2.381;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1528,174,0 chrVII 303745 . T A 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.271;QD=18.12;ReadPosRankSum=1.649;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1555,165,0 chrVII 303887 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.89;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1981,213,0 chrVII 303997 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.64;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1953,219,0 chrVII 304012 . A G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.125;QD=17.64;ReadPosRankSum=1.661;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1744,198,0 chrVII 304140 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.245;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.274;QD=22.09;ReadPosRankSum=1.595;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1712,195,0 chrVII 304214 . T A 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.808;QD=22.06;ReadPosRankSum=-1.501;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2349,252,0 chrVII 304247 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.473;QD=20.03;ReadPosRankSum=1.700;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2196,249,0 chrVII 304566 . T C 2391 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.28;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,120:124:99:2424,273,0 chrVII 304609 . A T 2387 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.70;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2420,264,0 chrVII 305050 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.38;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2087,240,0 chrVII 305095 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.13;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1766,198,0 chrVII 305110 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.88;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1578,177,0 chrVII 305233 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.21;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1581,180,0 chrVII 305542 . A T 1052 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.23;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1085,117,0 chrVII 305553 . A T 965 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.55;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:998,105,0 chrVII 305644 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4273;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.90;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1684,183,0 chrVII 305680 . T G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=95;Dels=0.00;FS=7.577;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.180;QD=21.47;ReadPosRankSum=2.398;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2073,231,0 chrVII 305956 . T C 2470 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.52;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2503,282,0 chrVII 306050 . A G 2844 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.2768;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.61;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2877,324,0 chrVII 306133 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.3251;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.80;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2321,258,0 chrVII 306650 . C T 2976 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.04;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:3009,327,0 chrVII 306793 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.67;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1914,219,0 chrVII 306889 . A G 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.022;QD=18.44;ReadPosRankSum=1.552;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1453,165,0 chrVII 307064 . C G 315 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=19.1523;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=13.70;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,22:23:39:348,39,0 chrVII 307084 . C T 549 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.93;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:66:582,66,0 chrVII 307211 . C T 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=1.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:6:46,6,0 chrVII 307221 . A T 302 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.76;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:335,36,0 chrVII 307499 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.637;QD=23.33;ReadPosRankSum=1.685;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1736,195,0 chrVII 307742 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9021;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.08;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1502,171,0 chrVII 307865 . T C 1586 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.87;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1619,186,0 chrVII 307868 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.28;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1678,183,0 chrVII 308423 . C A 1990 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.95;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2023,219,0 chrVII 308778 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.83;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1566,168,0 chrVII 308830 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4216;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.76;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1374,156,0 chrVII 308913 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.69;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2226,237,0 chrVII 309574 . T C 1638 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1671,189,0 chrVII 310446 . C G 1416 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.70;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1449,162,0 chrVII 310453 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=16.62;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1479,168,0 chrVII 310596 . C A 1708 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.86;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1741,198,0 chrVII 310627 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=11.536;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.937;QD=20.78;ReadPosRankSum=2.795;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1363,156,0 chrVII 310899 . G A 1769 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.23;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1802,195,0 chrVII 310906 . T C 1698 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=99;Dels=0.00;FS=8.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.306;QD=17.15;ReadPosRankSum=3.368;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:4,95:99:99:1731,195,0 chrVII 310907 . T C 1710 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.658;QD=17.10;ReadPosRankSum=1.697;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1743,177,0 chrVII 311249 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.95;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1856,201,0 chrVII 311762 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.12;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1294,147,0 chrVII 311795 . A T 964 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.42;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:997,108,0 chrVII 312110 . T A 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.813;QD=20.82;ReadPosRankSum=1.662;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1053,111,0 chrVII 312735 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.70;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1622,183,0 chrVII 312743 . T G 1324 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.02;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1357,153,0 chrVII 312897 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.00;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1390,150,0 chrVII 312966 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.14;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1238,132,0 chrVII 313053 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.74;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1511,159,0 chrVII 313141 . T G 1552 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.86;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1585,177,0 chrVII 313362 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.43;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2232,249,0 chrVII 313533 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.87;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1598,171,0 chrVII 313815 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.91;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2208,240,0 chrVII 314032 . A G 3087 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3120,354,0 chrVII 314287 . A C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.468;QD=19.63;ReadPosRankSum=1.439;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2349,276,0 chrVII 314428 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.8998;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.08;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2265,255,0 chrVII 314616 . G A 1059 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.91;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1092,120,0 chrVII 314617 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.48;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1085,120,0 chrVII 315146 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.76;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2219,243,0 chrVII 315200 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.75;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1621,177,0 chrVII 315504 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.98;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1627,183,0 chrVII 315509 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.12;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1524,171,0 chrVII 315938 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.83;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1845,210,0 chrVII 316175 . G A 2395 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.38;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2428,261,0 chrVII 316307 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.73;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1712,186,0 chrVII 316332 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.419;QD=20.84;ReadPosRankSum=1.696;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2013,231,0 chrVII 316576 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=13.75;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1298,159,0 chrVII 316577 . A C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=89;Dels=0.00;FS=5.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.921;QD=13.84;ReadPosRankSum=2.785;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1265,135,0 chrVII 316588 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.79;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1581,177,0 chrVII 316685 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.52;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1324,147,0 chrVII 316731 . A T 1298 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.37;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1331,147,0 chrVII 316750 . C A 1333 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.85;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1366,150,0 chrVII 316827 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.90;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1419,159,0 chrVII 316980 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.17;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1452,156,0 chrVII 317124 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.10;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1757,192,0 chrVII 317159 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.72;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1568,177,0 chrVII 317269 . A T 1596 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.20;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1629,174,0 chrVII 317405 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.17;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1873,210,0 chrVII 317746 . T C 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.577;QD=20.63;ReadPosRankSum=1.694;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1910,213,0 chrVII 318040 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.59;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1929,219,0 chrVII 318105 . T A 2289 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.56;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2322,258,0 chrVII 318111 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.43;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2464,261,0 chrVII 318310 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=9.038;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=1.100;QD=22.42;ReadPosRankSum=2.391;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1916,219,0 chrVII 318334 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=79.8436;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.22;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1691,189,0 chrVII 318383 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.10;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2204,243,0 chrVII 318421 . A G 2434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.163;DP=113;Dels=0.00;FS=11.058;HaplotypeScore=6.2909;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.381;QD=21.54;ReadPosRankSum=2.384;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2467,276,0 chrVII 318441 . G C 1873 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.93;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1906,219,0 chrVII 318467 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2378;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.47;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1483,174,0 chrVII 318583 . T C 1600 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=16.33;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1633,189,0 chrVII 318584 . C T 1715 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=17.50;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1748,189,0 chrVII 318587 . T C 1622 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=-0.978;QD=16.06;ReadPosRankSum=1.664;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1655,186,0 chrVII 318591 . A G 1568 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=14.93;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,101:105:99:1601,183,0 chrVII 318614 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=-0.247;QD=15.65;ReadPosRankSum=1.697;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1567,174,0 chrVII 318787 . T C 3535.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=161;Dels=0.00;FS=2.949;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-1.305;QD=21.96;ReadPosRankSum=2.404;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:2,159:161:99:3535,405,0 chrVII 318831 . A T 3062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=1.400;QD=24.30;ReadPosRankSum=1.649;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3095,333,0 chrVII 318860 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.407;QD=22.47;ReadPosRankSum=1.702;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2685,300,0 chrVII 318881 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=23.15;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2556,273,0 chrVII 318957 . A C 2050 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.58;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2083,237,0 chrVII 318985 . A C 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.896;HaplotypeScore=5.0515;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.151;QD=20.68;ReadPosRankSum=0.824;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2184,246,0 chrVII 319020 . A G 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-1.109;QD=19.38;ReadPosRankSum=1.663;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1971,222,0 chrVII 319144 . A G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=91;Dels=0.00;FS=6.372;HaplotypeScore=13.6524;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.014;QD=19.96;ReadPosRankSum=2.339;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,87:91:99:1849,207,0 chrVII 319179 . C G 1908 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=22.19;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1941,222,0 chrVII 319247 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=21.03;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1673,177,0 chrVII 319258 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=19.24;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1457,162,0 chrVII 319275 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.95;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1033,114,0 chrVII 319290 . T C 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=9.258;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=0.382;QD=18.76;ReadPosRankSum=1.674;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1140,129,0 chrVII 319297 . C G 1148 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=18.52;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1181,135,0 chrVII 319715 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=1;QD=6.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:52,6,0 chrVII 319966 . A C 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=0.346;QD=15.95;ReadPosRankSum=1.543;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,54:57:99:942,105,0 chrVII 319967 . A C 880 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=15.71;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:913,102,0 chrVII 320018 . C G 1475 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=17.35;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1508,174,0 chrVII 320532 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.15;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1867,216,0 chrVII 320597 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=16.66;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1416,165,0 chrVII 320614 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.001;QD=18.28;ReadPosRankSum=1.655;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1678,189,0 chrVII 320753 . T A 1680 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=17.87;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1713,192,0 chrVII 320756 . T C 1572 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=88;Dels=0.00;FS=6.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-1.058;QD=17.86;ReadPosRankSum=2.920;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1605,180,0 chrVII 320760 . C T 1627 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.14;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1660,183,0 chrVII 320828 . T C 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=4.462;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.893;QD=19.26;ReadPosRankSum=1.696;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1882,210,0 chrVII 320886 . T A 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=7.708;HaplotypeScore=9.2625;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.913;QD=20.10;ReadPosRankSum=2.258;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1581,174,0 chrVII 320919 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.38;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1209,138,0 chrVII 321024 . G A 867 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6377;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=12.39;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:900,96,0 chrVII 321057 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=40.6766;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=0.43;SB=-6.798e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:6:54,6,0 chrVII 321069 . G T 303.02 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=35.29;MQ0=0;QD=6.73;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:36:336,36,0 chrVII 321072 . G A 320 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=6.40;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:39:353,39,0 chrVII 321247 . C A 781 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.55;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:814,87,0 chrVII 321285 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.26;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:591,63,0 chrVII 321469 . C A 518 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.92;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:551,60,0 chrVII 321718 . G C 758 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.66;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:90:791,90,0 chrVII 323014 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6432;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.876;QD=19.66;ReadPosRankSum=1.693;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1783,204,0 chrVII 323073 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.20;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1588,180,0 chrVII 323128 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=5.643;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=0.892;QD=21.18;ReadPosRankSum=1.627;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1431,162,0 chrVII 323170 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.26;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1920,219,0 chrVII 323295 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.243;QD=20.50;ReadPosRankSum=1.671;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2390,270,0 chrVII 323433 . A T 308 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=18.12;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:341,42,0 chrVII 323434 . G A 304 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=17.88;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:337,42,0 chrVII 323441 . C T 318 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=17.67;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:351,42,0 chrVII 323458 . G A 292 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.43;MQ0=0;QD=19.47;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:39:325,39,0 chrVII 323461 . G A 286 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=17.87;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:39:319,39,0 chrVII 323495 . C G 299 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=14.24;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:332,39,0 chrVII 323500 . C T 289 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.21;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:322,36,0 chrVII 323505 . G A 273 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.37;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:306,36,0 chrVII 323540 . T C 359 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=16.32;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:392,45,0 chrVII 323584 . G A 156.03 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=14.18;SB=-2.803e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:24:189,24,0 chrVII 323594 . G A 207.01 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=14.79;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:240,27,0 chrVII 323600 . T C 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=14.22;SB=-2.502e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:232,27,0 chrVII 323602 . A G 194.01 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=13.86;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:227,27,0 chrVII 323607 . T G 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=11.54;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:183,21,0 chrVII 323641 . A C 278 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;QD=14.63;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:311,36,0 chrVII 323644 . A T 256 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=14.22;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:289,33,0 chrVII 323653 . T C 254 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=14.11;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:287,33,0 chrVII 323686 . C T 196.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=17.82;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:229,24,0 chrVII 323688 . C T 197.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=17.91;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:24:230,24,0 chrVII 323695 . C G 179.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=12.79;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:212,24,0 chrVII 323703 . T C 138.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.9282;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=10.62;SB=-2.706e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:171,21,0 chrVII 323738 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=14.4890;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=2.81;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:9:77,9,0 chrVII 323775 . A T 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=7.28;SB=-1.841e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:142,18,0 chrVII 323777 . A C 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=7.48;SB=-1.841e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:145,18,0 chrVII 323778 . A C 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=7.14;SB=-1.621e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:140,18,0 chrVII 323781 . A T 112.13 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=7.48;SB=-1.801e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:18:145,18,0 chrVII 323814 . C T 119.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=9.16;SB=-8.507e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:152,21,0 chrVII 323821 . T C 119.06 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.55;MQ0=0;QD=11.91;SB=-2.706e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:152,21,0 chrVII 323827 . A T 119.06 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=10.82;SB=-2.606e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:152,21,0 chrVII 323829 . A G 119.06 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=0;QD=10.82;SB=-5.406e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:152,21,0 chrVII 323859 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=6.81;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:87,12,0 chrVII 323875 . G A 80.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=10.03;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:113,15,0 chrVII 323883 . G C 81.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=8.13;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:114,15,0 chrVII 323897 . C T 64.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=7.17;SB=-2.649e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:97,12,0 chrVII 323923 . G A 93.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=11.9150;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.66;SB=-2.827e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:126,15,0 chrVII 323966 . A G 128.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=5.34;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:161,18,0 chrVII 323971 . A T 106.26 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=4.43;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:139,15,0 chrVII 323973 . C G 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=5.17;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:157,18,0 chrVII 324002 . C G 106.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=5.31;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:139,15,0 chrVII 324005 . C G 98.26 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=5.17;SB=-2.227e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:15:131,15,0 chrVII 324023 . A T 72.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=8.06;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:105,12,0 chrVII 324040 . A T 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=2.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:47,6,0 chrVII 324062 . G A 106.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=10.63;SB=-8.176e+01 GT:AD:DP:GQ:PL 1/1:0,7:10:15:139,15,0 chrVII 324082 . G A 254 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=18.14;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:287,30,0 chrVII 324119 . A G 594 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=19.16;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:627,72,0 chrVII 324248 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.6549;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;MQRankSum=-1.159;QD=1.57;ReadPosRankSum=1.448;SB=-2.376e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:6:50,6,0 chrVII 324278 . A G 130.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=5.42;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:163,18,0 chrVII 324279 . T C 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=5.26;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:159,18,0 chrVII 324280 . T C 152.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;MQRankSum=-1.067;QD=5.85;ReadPosRankSum=1.200;SB=-4.807e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:21:185,21,0 chrVII 324296 . A T 526 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=12.23;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:559,60,0 chrVII 324307 . G A 698 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=13.69;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:81:731,81,0 chrVII 324328 . C G 909 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=15.95;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:942,105,0 chrVII 324427 . G A 338 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=14.70;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:371,42,0 chrVII 324430 . A G 290 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=13.18;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:323,39,0 chrVII 324432 . A G 237 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=11.85;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:33:270,33,0 chrVII 324443 . T C 182.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.946;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=0.630;QD=8.27;ReadPosRankSum=1.419;SB=-9.796e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:27:215,27,0 chrVII 324452 . T C 193.01 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=8.39;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:226,27,0 chrVII 324507 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=15.13;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:850,90,0 chrVII 324535 . C A 737 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=13.91;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:770,81,0 chrVII 324547 . G T 463 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=9.08;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:54:496,54,0 chrVII 324572 . C A 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.066;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.355;QD=1.28;ReadPosRankSum=-2.356;SB=-7.251e+01 GT:AD:DP:GQ:PL 1/1:20,27:47:12:94,12,0 chrVII 324601 . G T 489 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=8.89;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:522,60,0 chrVII 324620 . A G 791 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=11.30;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:96:824,96,0 chrVII 324640 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=16.32;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1241,141,0 chrVII 324676 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=20.38;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1378,153,0 chrVII 324723 . T C 521 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=10.85;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:554,66,0 chrVII 324741 . T A 459 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=9.77;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:57:492,57,0 chrVII 324746 . C T 317 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;MQRankSum=1.356;QD=6.89;ReadPosRankSum=1.281;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:42:350,42,0 chrVII 324749 . T C 284 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=1.320;QD=6.76;ReadPosRankSum=1.650;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:39:317,39,0 chrVII 324750 . T A 278 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;MQRankSum=0.144;QD=6.47;ReadPosRankSum=2.336;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:39:311,39,0 chrVII 324754 . C T 310 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.995;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;MQRankSum=1.511;QD=6.60;ReadPosRankSum=1.659;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:42:343,42,0 chrVII 324799 . A G 744 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=14.59;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:90:777,90,0 chrVII 324805 . G A 939 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=15.65;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:972,108,0 chrVII 324837 . A C 1334 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=18.79;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1367,153,0 chrVII 324905 . T C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.046;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;MQRankSum=-1.260;QD=21.44;ReadPosRankSum=1.680;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1448,165,0 chrVII 324953 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=23.75;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1292,138,0 chrVII 325035 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=18.19;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:906,108,0 chrVII 325049 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=17.85;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:890,105,0 chrVII 325050 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=15.84;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:809,99,0 chrVII 325096 . T A 1126 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;QD=16.56;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1159,132,0 chrVII 325115 . A G 675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.060;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=35.2653;MLEAC=2;MLEAF=1.00;MQ=32.50;MQ0=0;MQRankSum=-0.282;QD=11.84;ReadPosRankSum=2.364;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:84:708,84,0 chrVII 325136 . C T 727 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=15.47;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:760,81,0 chrVII 325152 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.00;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:93:828,93,0 chrVII 325191 . T C 873 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=13.03;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:906,102,0 chrVII 325209 . A T 1056 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=13.54;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1089,117,0 chrVII 325221 . A T 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;MQRankSum=-1.521;QD=15.26;ReadPosRankSum=1.690;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1284,138,0 chrVII 325246 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=13.20;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1155,129,0 chrVII 325250 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.51;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1150,123,0 chrVII 325257 . A T 1028 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=88.9188;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.89;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1061,117,0 chrVII 325283 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.02;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:874,93,0 chrVII 325306 . G A 556 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=12.64;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:589,63,0 chrVII 325307 . T A 545 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=12.39;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:578,63,0 chrVII 325329 . A T 513 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=10.91;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:546,63,0 chrVII 325363 . G A 589 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.50;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:66:622,66,0 chrVII 325378 . A T 561 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=15.58;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:594,66,0 chrVII 325562 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=19.60;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1503,174,0 chrVII 325752 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.00;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:993,108,0 chrVII 325784 . A G 1014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.529;QD=19.88;ReadPosRankSum=1.664;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1047,117,0 chrVII 325875 . A G 946 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:979,111,0 chrVII 326056 . C A 695 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.04;MQ0=0;QD=22.42;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:728,78,0 chrVII 326290 . C T 186.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=5.9322;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=10.34;SB=-5.504e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:24:219,24,0 chrVII 326814 . A G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=6.842;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.334;QD=20.98;ReadPosRankSum=1.692;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1858,210,0 chrVII 326922 . A G 937 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.12;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:970,111,0 chrVII 326974 . G C 1256 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.93;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1289,144,0 chrVII 327088 . G T 1671 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.57;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1704,183,0 chrVII 327130 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.87;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1518,174,0 chrVII 327148 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3453;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.37;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1375,150,0 chrVII 327158 . A G 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=3.041;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.416;QD=14.59;ReadPosRankSum=2.357;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1200,135,0 chrVII 327277 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.05;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1156,129,0 chrVII 327346 . C G 1154 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=16.49;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1187,135,0 chrVII 327366 . T C 877 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.39;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:910,105,0 chrVII 327632 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.62;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2726,312,0 chrVII 327706 . T A 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.9833;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.22;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2116,237,0 chrVII 327873 . T C 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=1.681;QD=20.36;ReadPosRankSum=1.630;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2802,318,0 chrVII 327931 . C A 2805 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.45;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2838,315,0 chrVII 328052 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.763;DP=113;Dels=0.00;FS=4.742;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-2.380;QD=20.73;ReadPosRankSum=3.763;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:5,108:113:99:2376,270,0 chrVII 328069 . T A 1983 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.44;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2016,222,0 chrVII 328120 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.14;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1682,192,0 chrVII 328195 . C G 2007 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=19.49;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2040,225,0 chrVII 328214 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=17.61;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1759,189,0 chrVII 328219 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=16.52;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1586,177,0 chrVII 328226 . A T 1466 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=16.29;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1499,162,0 chrVII 328270 . T G 949 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=15.31;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:982,111,0 chrVII 328273 . T G 966 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;QD=16.66;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:999,117,0 chrVII 328277 . G C 934 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;QD=16.10;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:967,111,0 chrVII 328300 . G A 777 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;QD=14.66;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:810,90,0 chrVII 328314 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=18.44;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:863,93,0 chrVII 328331 . T A 513 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=12.21;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:60:546,60,0 chrVII 328351 . T C 360 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=9.00;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:45:393,45,0 chrVII 328382 . C T 488 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=9.96;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:57:521,57,0 chrVII 328424 . C T 651 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=12.06;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:75:684,75,0 chrVII 328430 . T A 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=-1.672;QD=10.05;ReadPosRankSum=1.672;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:69:606,69,0 chrVII 328436 . A T 619 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=10.32;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:72:652,72,0 chrVII 328535 . T G 716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;MQRankSum=1.178;QD=14.32;ReadPosRankSum=1.663;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:87:749,87,0 chrVII 328549 . T C 563 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.06;MQ0=0;QD=12.24;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:69:596,69,0 chrVII 328552 . C G 576 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=12.26;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:72:609,72,0 chrVII 328565 . T A 382 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.548;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;MQRankSum=-1.932;QD=8.88;ReadPosRankSum=1.817;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:48:415,48,0 chrVII 328570 . C T 415 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;MQRankSum=-0.817;QD=8.83;ReadPosRankSum=1.871;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:51:448,51,0 chrVII 328574 . C T 531 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=10.62;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:564,63,0 chrVII 328715 . A G 591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.212;HaplotypeScore=40.7598;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;MQRankSum=0.157;QD=13.43;ReadPosRankSum=1.654;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:69:624,69,0 chrVII 328743 . T C 907 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=16.20;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:940,105,0 chrVII 328810 . G A 2519 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.02;FS=0.000;HaplotypeScore=18.7292;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=20.31;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2552,279,0 chrVII 328846 . T C 3382.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=21.68;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3382,390,0 chrVII 328862 . G C 3213.98 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=20.34;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,156:158:99:3247,369,0 chrVII 329009 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.81;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1584,171,0 chrVII 329109 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.398;QD=20.02;ReadPosRankSum=1.675;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2495,276,0 chrVII 329347 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.44;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1649,186,0 chrVII 329366 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.42;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1626,183,0 chrVII 329570 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.6289;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.55;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1563,177,0 chrVII 330257 . T C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.683;QD=22.43;ReadPosRankSum=1.635;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1648,183,0 chrVII 330639 . A C 1618 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.48;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1651,186,0 chrVII 330839 . G C 1934 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.15;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1967,222,0 chrVII 330986 . T A 1830 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.32;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1863,201,0 chrVII 331345 . G A 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6938;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.189;QD=16.47;ReadPosRankSum=1.595;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1696,192,0 chrVII 331346 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=3.4825;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=15.82;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1647,192,0 chrVII 332360 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.4209;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.36;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1988,219,0 chrVII 332582 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.34;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1228,132,0 chrVII 332753 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.99;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2048,222,0 chrVII 333068 . T C 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.292;QD=20.82;ReadPosRankSum=1.664;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2136,243,0 chrVII 333251 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.02;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2282,255,0 chrVII 333509 . A G 3040 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.3064;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3073,348,0 chrVII 334340 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5301;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.34;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1640,177,0 chrVII 334704 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.00;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1593,177,0 chrVII 334767 . T A 477 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=8.83;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:54:510,54,0 chrVII 334768 . T G 423 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=7.83;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:51:456,51,0 chrVII 334769 . T A 474 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;QD=9.12;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:54:507,54,0 chrVII 334770 . T A 473 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=0;MQRankSum=-1.666;QD=9.10;ReadPosRankSum=1.666;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:54:506,54,0 chrVII 334808 . A G 787 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=14.31;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:820,90,0 chrVII 335140 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=18.90;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1658,189,0 chrVII 335351 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.05;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2015,216,0 chrVII 335555 . A G 2760 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.81;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2793,312,0 chrVII 335674 . C T 3794.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=19.2268;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.72;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3794,408,0 chrVII 335764 . C T 2591 SnpCluster AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.6368;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=15.80;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2624,282,0 chrVII 335765 . C T 2634 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.6368;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=16.16;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2667,285,0 chrVII 335771 . A G 2331 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=9.650;HaplotypeScore=7.5233;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-0.445;QD=14.21;ReadPosRankSum=2.389;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:2,161:164:99:2364,264,0 chrVII 335798 . A G 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.640;DP=162;Dels=0.00;FS=20.455;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=-3.406;QD=13.64;ReadPosRankSum=3.776;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:5,156:162:99:2242,255,0 chrVII 335821 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=13.78;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2018,228,0 chrVII 335873 . C T 2590 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.77;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2623,279,0 chrVII 335970 . A G 3388.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=9.0467;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.780;QD=18.51;ReadPosRankSum=1.504;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,182:183:99:3388,381,0 chrVII 335980 . T C 2995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=162;Dels=0.00;FS=5.579;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.272;QD=18.49;ReadPosRankSum=1.710;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,159:162:99:3028,348,0 chrVII 336375 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.56;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1889,210,0 chrVII 336388 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.69;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1771,189,0 chrVII 336541 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.80;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1363,150,0 chrVII 336889 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.23;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1589,177,0 chrVII 336959 . A C 1049 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.20;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1082,123,0 chrVII 336967 . T A 1270 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.84;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1303,141,0 chrVII 337318 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.77;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1338,144,0 chrVII 337363 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.89;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1478,162,0 chrVII 337507 . A T 823 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.29;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:856,93,0 chrVII 337550 . C A 1119 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.94;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1152,123,0 chrVII 337618 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.115;QD=18.36;ReadPosRankSum=1.686;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1447,159,0 chrVII 338511 . A G 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.874;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.369;QD=20.90;ReadPosRankSum=1.619;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1329,153,0 chrVII 338625 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.123;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.933;QD=21.62;ReadPosRankSum=1.688;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1741,198,0 chrVII 338763 . C G 1660 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.06;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1693,192,0 chrVII 338820 . A G 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.529;QD=20.26;ReadPosRankSum=1.588;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1492,168,0 chrVII 338951 . T A 1389 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1422,150,0 chrVII 339102 . C A 1550 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.61;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1583,177,0 chrVII 339118 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.11;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1536,165,0 chrVII 339168 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=1.039;QD=19.34;ReadPosRankSum=1.691;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1677,189,0 chrVII 339185 . A T 1676 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.35;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1709,183,0 chrVII 339606 . G T 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.18;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1526,171,0 chrVII 339639 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1483,156,0 chrVII 339750 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.44;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1559,177,0 chrVII 339776 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.06;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1444,156,0 chrVII 339874 . A C 1244 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.57;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1277,141,0 chrVII 340068 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.88;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1474,156,0 chrVII 340131 . A C 1395 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.22;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1428,159,0 chrVII 340464 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1709,198,0 chrVII 340698 . G A 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.364;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.253;QD=22.41;ReadPosRankSum=1.658;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2162,225,0 chrVII 341429 . T G 1594 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.68;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1627,180,0 chrVII 341493 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.70;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1353,153,0 chrVII 341659 . C A 989 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=17.98;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1022,111,0 chrVII 342055 . A C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=65;Dels=0.00;FS=19.685;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.137;QD=20.57;ReadPosRankSum=2.372;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:2,61:65:99:1370,159,0 chrVII 342498 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.48;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1117,129,0 chrVII 342656 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.77;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1666,189,0 chrVII 342704 . A G 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=92;Dels=0.00;FS=4.442;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.214;QD=21.79;ReadPosRankSum=1.693;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:2038,234,0 chrVII 342962 . A G 629 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.67;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:662,72,0 chrVII 343116 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.58;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1615,183,0 chrVII 343251 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.62;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1781,195,0 chrVII 343639 . C T 2313 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.46;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2346,255,0 chrVII 343914 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.85;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1581,180,0 chrVII 344216 . A C 2193 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2226,249,0 chrVII 344290 . A T 2013 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.33;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2046,222,0 chrVII 344309 . T G 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.818;QD=18.02;ReadPosRankSum=1.694;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1727,192,0 chrVII 344550 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.07;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1864,213,0 chrVII 344881 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.22;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1120,126,0 chrVII 345064 . G A 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=79;Dels=0.00;FS=5.119;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.888;QD=20.27;ReadPosRankSum=-1.732;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1634,157,0 chrVII 345331 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.21;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1499,162,0 chrVII 345471 . T C 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.128;DP=113;Dels=0.00;FS=14.671;HaplotypeScore=13.7930;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.572;QD=20.20;ReadPosRankSum=3.332;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:4,108:113:99:2316,264,0 chrVII 345925 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.4682;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.81;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3030,345,0 chrVII 346253 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.91;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2459,276,0 chrVII 346294 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.335;QD=19.41;ReadPosRankSum=1.704;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2440,282,0 chrVII 346336 . C T 2941 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.95;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2974,321,0 chrVII 346369 . G A 2718 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.23;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2751,309,0 chrVII 346793 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.22;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1603,174,0 chrVII 346985 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.63;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1634,174,0 chrVII 347168 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.13;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2294,246,0 chrVII 347213 . A G 1238 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.76;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1271,144,0 chrVII 347223 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.65;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1376,150,0 chrVII 347274 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=15.56;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1029,111,0 chrVII 347278 . G A 985 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=14.49;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1018,111,0 chrVII 347562 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.68;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1399,153,0 chrVII 347571 . C T 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.751;QD=18.74;ReadPosRankSum=1.213;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1176,111,0 chrVII 347577 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.37;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1081,123,0 chrVII 347679 . A T 2036 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.37;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2069,222,0 chrVII 347993 . G C 885 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.83;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:918,105,0 chrVII 348093 . C A 1061 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.02;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1094,120,0 chrVII 348496 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.68;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1938,207,0 chrVII 348923 . T G 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.31;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1525,177,0 chrVII 349044 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.82;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1381,147,0 chrVII 349065 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.14;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1082,123,0 chrVII 349165 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1463,165,0 chrVII 349285 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1657,177,0 chrVII 349649 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.53;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1244,135,0 chrVII 349844 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.41;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:984,114,0 chrVII 350485 . T C 1046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=53;Dels=0.00;FS=3.285;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.379;QD=19.74;ReadPosRankSum=1.591;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,48:53:99:1079,123,0 chrVII 350521 . T A 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=20.40;ReadPosRankSum=1.678;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1359,147,0 chrVII 351015 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9782;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.25;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1730,189,0 chrVII 351063 . T C 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.924;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.239;QD=21.42;ReadPosRankSum=2.320;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1254,141,0 chrVII 351287 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.47;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2145,240,0 chrVII 351660 . T C 2163 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.01;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2196,249,0 chrVII 352151 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1919,204,0 chrVII 352206 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.64;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1684,189,0 chrVII 352433 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.71;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2498,282,0 chrVII 352556 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.83;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1282,141,0 chrVII 352658 . T C 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=4.017;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.179;QD=20.60;ReadPosRankSum=1.613;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1228,138,0 chrVII 352719 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.89;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1367,153,0 chrVII 352838 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.06;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1381,159,0 chrVII 352889 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.37;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1080,120,0 chrVII 353028 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.11;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1512,156,0 chrVII 353297 . G C 1566 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.03;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1599,180,0 chrVII 353381 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.14;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1472,162,0 chrVII 353777 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.36;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1039,111,0 chrVII 353846 . A G 1261 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.37;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1294,144,0 chrVII 353852 . G T 1275 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.24;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1308,144,0 chrVII 354122 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.62;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:870,96,0 chrVII 354728 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.34;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1485,165,0 chrVII 354898 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.3800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2289,255,0 chrVII 355166 . C A 2074 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.99;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2107,228,0 chrVII 355193 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.38;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2025,225,0 chrVII 355265 . T C 983 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.95;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1016,117,0 chrVII 355292 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.50;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1008,108,0 chrVII 355706 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.15;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1464,168,0 chrVII 356393 . A T 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.808;QD=20.62;ReadPosRankSum=1.640;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1600,171,0 chrVII 356416 . C A 1370 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.41;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1403,150,0 chrVII 356588 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.04;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1116,120,0 chrVII 356669 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.56;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:737,81,0 chrVII 357041 . C T 583 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.59;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:616,66,0 chrVII 357061 . T C 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.683;QD=19.33;ReadPosRankSum=1.628;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:75:671,75,0 chrVII 357149 . G A 613 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.8148;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.32;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:72:646,72,0 chrVII 357269 . A G 849 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:882,99,0 chrVII 357451 . C G 1647 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.87;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1680,186,0 chrVII 357508 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.55;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1174,135,0 chrVII 357517 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.31;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1158,129,0 chrVII 357539 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=14.40;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1156,126,0 chrVII 357689 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7411;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.15;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2127,237,0 chrVII 358102 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0863;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.53;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1593,183,0 chrVII 358124 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=103;Dels=0.03;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.000;QD=16.17;ReadPosRankSum=1.697;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1698,192,0 chrVII 358168 . A T 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.770;QD=18.04;ReadPosRankSum=2.394;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:2,88:93:99:1711,186,0 chrVII 358237 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.18;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1685,186,0 chrVII 358522 . G A 836 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.58;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:869,96,0 chrVII 358656 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.53;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1745,186,0 chrVII 358777 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.74;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2288,246,0 chrVII 358861 . T G 1840 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1873,216,0 chrVII 358959 . C T 3033 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3066,330,0 chrVII 359313 . T G 2600 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=23.21;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2633,306,0 chrVII 359833 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.96;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1734,189,0 chrVII 360075 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.53;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1217,129,0 chrVII 360105 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.70;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:971,105,0 chrVII 360106 . T C 937 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.35;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:970,114,0 chrVII 360441 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.03;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1421,159,0 chrVII 360498 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.60;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1718,189,0 chrVII 360816 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.32;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1535,171,0 chrVII 361011 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.499;QD=19.61;ReadPosRankSum=1.693;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1798,204,0 chrVII 361317 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1969,210,0 chrVII 361539 . A G 1375 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=19.37;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1408,159,0 chrVII 361541 . C T 1421 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9028;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.47;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1454,156,0 chrVII 361547 . A G 1337 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=87;Dels=0.00;FS=6.162;HaplotypeScore=9.0467;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-0.917;QD=15.37;ReadPosRankSum=2.822;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:3,82:87:99:1370,153,0 chrVII 361704 . C G 1102 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=15.52;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1135,129,0 chrVII 361812 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=18.17;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1305,138,0 chrVII 361818 . T C 1104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=2.911;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-1.013;QD=16.48;ReadPosRankSum=2.303;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1137,129,0 chrVII 361880 . A G 1280 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.61;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1313,147,0 chrVII 361887 . A C 1411 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.21;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1444,165,0 chrVII 361970 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=45.4485;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=16.80;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:974,114,0 chrVII 362066 . G A 757 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.41;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:790,84,0 chrVII 362077 . C T 643 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=15.68;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:72:676,72,0 chrVII 362101 . T C 906 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=16.78;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:939,105,0 chrVII 362200 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.83;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1605,174,0 chrVII 362576 . C G 2211 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.11;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2244,249,0 chrVII 362600 . C T 2411 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.12;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2444,264,0 chrVII 363302 . G T 2165 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.50;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2198,240,0 chrVII 363325 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.99;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2232,252,0 chrVII 363359 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=15.7989;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.64;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2613,279,0 chrVII 363731 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.77;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2004,231,0 chrVII 363931 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.12;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2008,216,0 chrVII 363959 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.43;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2152,240,0 chrVII 364128 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.22;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:894,99,0 chrVII 364189 . A T 2150 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7538;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.20;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2183,246,0 chrVII 364587 . A G 1993 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6656;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=11;MQRankSum=-1.317;QD=17.95;ReadPosRankSum=2.401;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:7,104:111:99:2026,228,0 chrVII 364650 . C G 1678 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=19.51;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1711,195,0 chrVII 364893 . T C 781 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=24;QD=11.32;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:13,54:69:90:814,90,0 chrVII 365020 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.37;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1692,177,0 chrVII 365023 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.77;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1476,165,0 chrVII 365049 . A G 1112 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=16.60;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1145,126,0 chrVII 365054 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=15.85;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1063,120,0 chrVII 365076 . G A 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;MQRankSum=-0.099;QD=13.41;ReadPosRankSum=0.544;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:972,105,0 chrVII 365097 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=13.49;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:964,105,0 chrVII 365109 . T C 914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=6.998;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=-0.643;QD=12.87;ReadPosRankSum=2.381;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:947,105,0 chrVII 365268 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.26;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:965,108,0 chrVII 365290 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.31;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1245,132,0 chrVII 365699 . T C 334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.97;MQ0=0;MQRankSum=-0.133;QD=8.56;ReadPosRankSum=1.644;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:42:367,42,0 chrVII 365727 . A G 227 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=5.68;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:30:260,30,0 chrVII 365766 . C T 665 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=14.46;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:698,75,0 chrVII 365828 . T A 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.437;QD=21.77;ReadPosRankSum=2.374;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1448,153,0 chrVII 365991 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=22.80;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1378,150,0 chrVII 366038 . A T 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.420;QD=20.74;ReadPosRankSum=1.680;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1402,156,0 chrVII 366072 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.53;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1146,126,0 chrVII 366235 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.07;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1262,138,0 chrVII 366666 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.37;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1785,198,0 chrVII 366675 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.72;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1856,207,0 chrVII 366762 . A G 964 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=17.53;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:997,111,0 chrVII 366829 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=15.83;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1078,120,0 chrVII 367179 . T G 2364 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.0306;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.70;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2397,270,0 chrVII 367741 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.54;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:923,102,0 chrVII 367828 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.97;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,132,0 chrVII 368002 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=9.1582;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.57;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1618,180,0 chrVII 368105 . A G 956 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.38;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:989,111,0 chrVII 368108 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.35;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1079,114,0 chrVII 368385 . G C 1746 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.79;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1779,201,0 chrVII 368539 . T C 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.062;QD=21.15;ReadPosRankSum=1.658;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2000,225,0 chrVII 369074 . G A 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.01;FS=0.000;HaplotypeScore=9.2631;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.742;QD=20.78;ReadPosRankSum=-1.171;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2277,246,0 chrVII 369167 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1971,210,0 chrVII 369600 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.63;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1547,171,0 chrVII 369666 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.26;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2010,216,0 chrVII 369862 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.70;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1866,207,0 chrVII 369881 . C A 2024 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.31;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2057,222,0 chrVII 369971 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.57;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1586,177,0 chrVII 370030 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.24;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1273,144,0 chrVII 370045 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=11.94;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:90:797,90,0 chrVII 370051 . G T 759 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=12.44;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:792,84,0 chrVII 370075 . T C 861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=0.281;QD=11.64;ReadPosRankSum=1.685;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:894,102,0 chrVII 370360 . A G 1881 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.62;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1914,213,0 chrVII 370489 . A C 1680 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.00;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1713,198,0 chrVII 370641 . G T 2732 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2765,297,0 chrVII 370822 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.47;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1511,162,0 chrVII 370870 . T G 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=2.587;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.337;QD=22.72;ReadPosRankSum=2.922;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:2078,237,0 chrVII 370897 . G T 2292 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.83;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2325,252,0 chrVII 371116 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.23;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1533,171,0 chrVII 371263 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.52;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1774,189,0 chrVII 371265 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.69;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1678,189,0 chrVII 371335 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.58;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1849,198,0 chrVII 371489 . T G 1686 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.56;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1719,189,0 chrVII 372033 . G C 1999 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.46;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2032,231,0 chrVII 372211 . A C 1373 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.07;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1406,156,0 chrVII 372223 . T G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.259;QD=16.30;ReadPosRankSum=1.692;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1451,162,0 chrVII 372293 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.93;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2286,252,0 chrVII 372417 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.23;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1687,180,0 chrVII 372695 . A G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.656;QD=18.96;ReadPosRankSum=1.694;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1758,198,0 chrVII 372717 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.21;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1781,189,0 chrVII 372857 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8581;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.44;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1791,201,0 chrVII 372926 . A C 1185 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=16.93;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1218,138,0 chrVII 373531 . A G 1909 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.72;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1942,222,0 chrVII 373580 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.57;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1686,189,0 chrVII 373624 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=21.42;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2261,240,0 chrVII 373646 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.42;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2324,258,0 chrVII 373713 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.91;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2187,243,0 chrVII 373766 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.0413;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.22;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1936,210,0 chrVII 373940 . C G 2192 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.12;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2225,246,0 chrVII 373957 . A T 1917 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.27;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1950,207,0 chrVII 373958 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.43;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1922,207,0 chrVII 373977 . A G 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.945;DP=111;Dels=0.00;FS=15.392;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.841;QD=14.76;ReadPosRankSum=4.062;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:6,105:111:99:1671,192,0 chrVII 374582 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.4130;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.32;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,67:72:99:1424,159,0 chrVII 374973 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5438;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.60;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,177,0 chrVII 375001 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.15;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1471,165,0 chrVII 375036 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.94;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1459,156,0 chrVII 375227 . A T 2040 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4186;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.00;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2073,225,0 chrVII 375494 . G T 1838 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.20;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1871,210,0 chrVII 375910 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.71;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1813,204,0 chrVII 375934 . A G 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.429;HaplotypeScore=4.4197;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.653;QD=21.52;ReadPosRankSum=1.619;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1346,156,0 chrVII 375973 . C A 1478 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.09;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1511,165,0 chrVII 376112 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.59;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1742,189,0 chrVII 376314 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.12;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2368,255,0 chrVII 376364 . A G 2812 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.63;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2845,315,0 chrVII 376705 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.40;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2381,258,0 chrVII 377024 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.75;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2048,222,0 chrVII 377257 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.95;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2118,237,0 chrVII 377556 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.83;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2476,276,0 chrVII 377626 . A G 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.449;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.785;QD=22.78;ReadPosRankSum=1.673;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2698,309,0 chrVII 378078 . C A 2068 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.41;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2101,225,0 chrVII 378347 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.57;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2255,237,0 chrVII 378538 . T A 2754 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.95;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2787,297,0 chrVII 379046 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7783;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.26;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1946,213,0 chrVII 379420 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1372,153,0 chrVII 379480 . C G 1125 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.31;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1158,132,0 chrVII 379579 . T C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=11.361;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.293;QD=16.84;ReadPosRankSum=2.388;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1380,156,0 chrVII 379601 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.04;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1347,141,0 chrVII 379657 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.16;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1431,159,0 chrVII 379677 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=16.79;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1225,141,0 chrVII 379743 . A G 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.220;QD=17.57;ReadPosRankSum=1.669;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1017,117,0 chrVII 379781 . G C 1292 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.90;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1325,153,0 chrVII 379937 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.93;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1612,189,0 chrVII 380141 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.04;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1001,108,0 chrVII 380164 . C T 842 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.30;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:875,99,0 chrVII 380177 . A T 808 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.57;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:841,93,0 chrVII 380314 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.57;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1755,201,0 chrVII 380368 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1826,204,0 chrVII 380458 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.78;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1745,186,0 chrVII 380492 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.28;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1331,141,0 chrVII 380756 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.646;QD=19.67;ReadPosRankSum=1.689;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1626,183,0 chrVII 380930 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.19;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1741,192,0 chrVII 381517 . C G 2040 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.03;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:97:99:2073,234,0 chrVII 381897 . G A 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.530;QD=17.02;ReadPosRankSum=1.429;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1837,201,0 chrVII 382108 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.77;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2101,225,0 chrVII 382150 . A G 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.244;QD=22.18;ReadPosRankSum=1.688;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1785,204,0 chrVII 382183 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.06;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1798,198,0 chrVII 382210 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.16;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1767,198,0 chrVII 382476 . A G 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.155;QD=21.27;ReadPosRankSum=1.688;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1692,189,0 chrVII 382774 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.130;QD=21.17;ReadPosRankSum=1.632;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1494,171,0 chrVII 382993 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1533,162,0 chrVII 383348 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1599,183,0 chrVII 383435 . T C 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.472;QD=21.02;ReadPosRankSum=1.680;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1420,162,0 chrVII 383573 . G T 2985 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.5360;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.14;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3018,324,0 chrVII 383893 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.954;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.107;QD=19.14;ReadPosRankSum=2.400;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1928,225,0 chrVII 384031 . T A 1602 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=13.6735;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.78;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1635,177,0 chrVII 384239 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=15.11;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1257,141,0 chrVII 384244 . C G 1075 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6037;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=15.14;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1108,126,0 chrVII 384425 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.83;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1351,153,0 chrVII 384641 . C A 1404 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.77;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1437,162,0 chrVII 384678 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.21;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1301,147,0 chrVII 384785 . T C 342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=3.632;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.693;QD=11.40;ReadPosRankSum=1.617;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:45:375,45,0 chrVII 384786 . G A 361 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=12.03;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:394,45,0 chrVII 385178 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=21.92;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1414,159,0 chrVII 385194 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.35;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1291,147,0 chrVII 385288 . A T 1314 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.90;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1347,150,0 chrVII 385519 . T C 660 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=10.82;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:78:693,78,0 chrVII 385522 . G T 589 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;QD=9.20;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:66:622,66,0 chrVII 385525 . A G 520 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=8.97;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:63:553,63,0 chrVII 385531 . C T 514 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=9.35;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:547,60,0 chrVII 385534 . C T 419 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=0;QD=7.62;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:51:452,51,0 chrVII 385540 . A G 386 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=7.28;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:48:419,48,0 chrVII 385542 . T C 364 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=54;Dels=0.00;FS=2.876;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;MQRankSum=-0.710;QD=6.74;ReadPosRankSum=1.763;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:45:397,45,0 chrVII 385555 . C A 473 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=8.16;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:57:506,57,0 chrVII 385570 . T C 543 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=9.87;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:63:576,63,0 chrVII 385879 . T C 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=79;Dels=0.00;FS=6.193;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=1;MQRankSum=-1.585;QD=14.48;ReadPosRankSum=2.910;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1177,135,0 chrVII 386017 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.01;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2074,231,0 chrVII 386209 . T G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.292;DP=53;Dels=0.00;FS=49.269;HaplotypeScore=4.8131;MLEAC=1;MLEAF=0.500;MQ=46.55;MQ0=0;MQRankSum=-3.240;QD=0.51;ReadPosRankSum=-3.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,13:53:57:57,0,760 chrVII 386494 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=15.78;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1453,156,0 chrVII 386539 . T C 1093 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;QD=12.28;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1126,126,0 chrVII 386548 . C A 1276 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=13.29;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1309,141,0 chrVII 386549 . A C 1217 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;MQRankSum=-1.696;QD=12.68;ReadPosRankSum=1.696;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1250,144,0 chrVII 386557 . A C 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=12.36;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1232,138,0 chrVII 386563 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=11.65;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1128,129,0 chrVII 386581 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=12.96;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1122,123,0 chrVII 386593 . C T 924 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=11.13;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:957,108,0 chrVII 386596 . C T 744 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=9.42;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:93:777,93,0 chrVII 386608 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=0;QD=13.09;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1185,129,0 chrVII 386978 . C G 1484 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=16.13;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1517,174,0 chrVII 386979 . G C 1496 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=15.91;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1529,174,0 chrVII 387007 . C A 1743 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.09;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1776,192,0 chrVII 387160 . T C 2225 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.05;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2258,252,0 chrVII 387205 . C A 2243 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=17.94;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2276,261,0 chrVII 387637 . T C 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=133;Dels=0.00;FS=5.576;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.107;QD=16.88;ReadPosRankSum=1.679;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,129:133:99:2278,261,0 chrVII 387718 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.65;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1703,183,0 chrVII 387793 . T C 2365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.402;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.046;QD=21.31;ReadPosRankSum=1.670;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2398,270,0 chrVII 387977 . T C 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.470;QD=18.88;ReadPosRankSum=1.680;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1279,141,0 chrVII 388315 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1644,189,0 chrVII 388627 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.64;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1935,210,0 chrVII 388864 . T C 800 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.3063;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=10.00;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:96:833,96,0 chrVII 388942 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.07;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2488,267,0 chrVII 389105 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.39;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1338,141,0 chrVII 389325 . A G 2391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.164;QD=19.60;ReadPosRankSum=1.704;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2424,279,0 chrVII 389376 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.35;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2220,249,0 chrVII 389508 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.14;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1472,168,0 chrVII 389529 . C A 1575 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.50;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1608,174,0 chrVII 389751 . A G 1506 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.82;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1539,174,0 chrVII 389777 . C A 1441 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.74;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1474,159,0 chrVII 389935 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.422;QD=23.78;ReadPosRankSum=1.525;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1626,186,0 chrVII 390193 . T G 2093 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.58;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2126,240,0 chrVII 390234 . T A 2012 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.4528;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2045,219,0 chrVII 390274 . A T 1736 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1769,195,0 chrVII 390358 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.92;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1414,153,0 chrVII 390359 . T G 1313 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.24;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1346,153,0 chrVII 390472 . C G 1880 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.12;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1913,216,0 chrVII 390695 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.28;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1344,141,0 chrVII 390921 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.46;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1142,129,0 chrVII 391024 . C A 1536 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1569,174,0 chrVII 391138 . G T 2146 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.39;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2179,234,0 chrVII 391186 . T C 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.053;QD=21.79;ReadPosRankSum=1.698;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2256,261,0 chrVII 391249 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.60;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2063,222,0 chrVII 391279 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.71;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1648,186,0 chrVII 391475 . T A 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.245;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.857;QD=21.37;ReadPosRankSum=1.696;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2085,228,0 chrVII 391874 . A G 2143 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.81;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2176,249,0 chrVII 392158 . C T 2548 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.97;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2581,279,0 chrVII 392315 . T C 2551 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.80;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2584,291,0 chrVII 392382 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.20;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1780,192,0 chrVII 392603 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.80;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1676,192,0 chrVII 392984 . G A 816 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.00;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:849,93,0 chrVII 392993 . T C 711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.346;QD=15.80;ReadPosRankSum=1.655;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:84:744,84,0 chrVII 393116 . A G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.413;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.329;QD=20.78;ReadPosRankSum=1.688;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1675,189,0 chrVII 393221 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.68;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1235,138,0 chrVII 393228 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=17.55;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1174,135,0 chrVII 393326 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.2715;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.79;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1779,204,0 chrVII 393563 . C A 1995 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.93;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2028,219,0 chrVII 393632 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.58;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1597,174,0 chrVII 393726 . G A 2491 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=23.28;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2524,273,0 chrVII 393744 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=18.66;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1806,192,0 chrVII 393752 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=14.77;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1495,165,0 chrVII 393780 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=12.91;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1221,138,0 chrVII 393813 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=15.89;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1431,153,0 chrVII 393817 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.24;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1430,156,0 chrVII 394219 . T C 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.403;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.133;QD=17.79;ReadPosRankSum=1.604;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1474,168,0 chrVII 394459 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=18.20;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1289,147,0 chrVII 394511 . T A 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=5.103;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.764;QD=11.06;ReadPosRankSum=1.630;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:84:785,84,0 chrVII 394550 . G C 634 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=10.06;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:75:667,75,0 chrVII 394560 . A G 567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=5.652;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.217;QD=9.30;ReadPosRankSum=2.885;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:69:600,69,0 chrVII 394643 . A G 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.421;QD=16.55;ReadPosRankSum=1.685;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1258,141,0 chrVII 394661 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.56;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1262,141,0 chrVII 394916 . G T 272 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=11.33;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:33:305,33,0 chrVII 394938 . C T 295 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=11.35;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:36:328,36,0 chrVII 394982 . G A 580 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=14.87;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:613,66,0 chrVII 395150 . A G 1039 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.74;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1072,123,0 chrVII 395210 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=23.34;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1270,141,0 chrVII 395241 . C G 1156 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=22.23;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1189,132,0 chrVII 395259 . T C 1111 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=20.20;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1144,126,0 chrVII 395359 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.91;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1664,180,0 chrVII 395553 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.41;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1178,126,0 chrVII 395602 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=20.24;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1025,111,0 chrVII 395608 . G T 940 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=18.80;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:973,105,0 chrVII 395614 . T C 784 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.04;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:817,93,0 chrVII 395734 . T C 764 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=16.61;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:46:93:797,93,0 chrVII 395752 . G C 839 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.46;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:872,99,0 chrVII 395869 . G A 745 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=12.21;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:90:778,90,0 chrVII 395882 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.63;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:848,90,0 chrVII 396018 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.77;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:934,105,0 chrVII 396026 . T C 823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.377;QD=17.89;ReadPosRankSum=1.657;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:96:856,96,0 chrVII 396062 . T C 708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.248;QD=16.86;ReadPosRankSum=1.650;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:84:741,84,0 chrVII 396092 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=14.34;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:578,63,0 chrVII 396110 . A G 589 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=15.92;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:69:622,69,0 chrVII 396170 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.63;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1191,132,0 chrVII 396203 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.99;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1400,159,0 chrVII 396232 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.44;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1151,132,0 chrVII 396235 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.42;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1100,120,0 chrVII 396269 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=12.33;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:58:87:748,87,0 chrVII 396452 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.88;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1166,132,0 chrVII 396581 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.80;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1905,204,0 chrVII 396647 . T C 2606 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.72;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2639,294,0 chrVII 396947 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=16.5947;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.42;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2022,231,0 chrVII 397091 . G C 2015 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.37;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2048,234,0 chrVII 397253 . C T 2617 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.81;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2650,291,0 chrVII 397290 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.78;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2090,225,0 chrVII 397325 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.38;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1806,204,0 chrVII 397613 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.34;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1445,159,0 chrVII 397692 . A G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.742;QD=16.88;ReadPosRankSum=1.670;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:995,114,0 chrVII 397937 . A G 1434 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.73;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1467,162,0 chrVII 399014 . T C 1791 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.96;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1824,207,0 chrVII 399032 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.97;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1451,165,0 chrVII 399494 . T C 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=114;Dels=0.00;FS=3.037;HaplotypeScore=10.9244;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.973;QD=17.64;ReadPosRankSum=2.405;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,109:114:99:2044,231,0 chrVII 399537 . T A 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.0479;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.514;QD=19.31;ReadPosRankSum=1.670;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2196,240,0 chrVII 400162 . T C 931 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=16.33;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:57:99:964,111,0 chrVII 401117 . A G 890 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.54;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:923,102,0 chrVII 401525 . T A 818 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.18;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:851,90,0 chrVII 401617 . G T 192.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=13.72;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,13:14:24:225,24,0 chrVII 401621 . T G 97.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=9.73;SB=-1.041e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:15:130,15,0 chrVII 401919 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=13.48;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:936,102,0 chrVII 402454 . T C 49.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.55;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:82,9,0 chrVII 402481 . T C 171.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.22;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:204,24,0 chrVII 402494 . C T 191.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.69;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:224,24,0 chrVII 402531 . G A 260 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;DP=15;Dels=0.00;FS=11.761;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.810;QD=17.33;ReadPosRankSum=-1.736;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:1,14:15:30:293,30,0 chrVII 402643 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=0;QD=3.54;SB=-7.172e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:71,9,0 chrVII 402691 . C G 279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=18;Dels=0.00;FS=19.417;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=0.584;QD=15.50;ReadPosRankSum=2.496;SB=-6.000e+01 GT:AD:DP:GQ:PL 1/1:4,14:18:39:312,39,0 chrVII 402692 . A G 294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.071;DP=18;Dels=0.00;FS=19.417;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=0.903;QD=16.33;ReadPosRankSum=2.708;SB=-7.900e+01 GT:AD:DP:GQ:PL 1/1:4,14:18:39:327,39,0 chrVII 402702 . G A 372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;DP=25;Dels=0.00;FS=11.187;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=2.246;QD=14.88;ReadPosRankSum=1.097;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:2,22:25:48:405,48,0 chrVII 402745 . C T 531 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.43;MQ0=0;QD=19.67;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:564,60,0 chrVII 402834 . C T 51.97 PASS AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=17.32;SB=-3.121e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:84,9,0 chrVII 402835 . C G 40.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=13.66;SB=-2.121e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:73,9,0 chrVII 403018 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=1.75;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:54,6,0 chrVII 403026 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=1.83;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:55,6,0 chrVII 403029 . C T 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=2.23;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:58,6,0 chrVII 403035 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.98;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:55,6,0 chrVII 403039 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=2.25;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:56,6,0 chrVII 403043 . A G 26.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=2.97;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:58,6,0 chrVII 403304 . C T 43.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=2;QD=4.40;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:76,9,0 chrVII 403320 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=2;QD=5.11;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:78,9,0 chrVII 403334 . G T 44.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=2;QD=4.50;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:77,9,0 chrVII 403361 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;QD=3.37;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrVII 403405 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=5.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrVII 403603 . T A 208.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=1;QD=16.00;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:241,27,0 chrVII 403607 . A G 213.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=1;QD=16.39;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:246,27,0 chrVII 403638 . G A 220.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=2;QD=15.72;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:253,27,0 chrVII 403664 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=2;QD=4.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrVII 403770 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.66;MQ0=8;QD=1.68;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:53,6,0 chrVII 405345 . G A 1246 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=23.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1279,138,0 chrVII 405346 . G A 1268 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=23.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1301,138,0 chrVII 405349 . G T 1115 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=0;QD=22.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1148,123,0 chrVII 405432 . C T 939 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.98;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:972,102,0 chrVII 405433 . T A 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.02;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,105,0 chrVII 405802 . A G 2402 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5600;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.88;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2435,273,0 chrVII 406015 . C G 2060 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.39;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2093,234,0 chrVII 406378 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1566,168,0 chrVII 407124 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.64;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1519,162,0 chrVII 408078 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.27;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1380,153,0 chrVII 408568 . T G 1505 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.13;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1538,177,0 chrVII 408678 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.73;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1493,168,0 chrVII 408708 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.56;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1154,129,0 chrVII 408709 . A C 1195 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=15.32;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1228,135,0 chrVII 408767 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=14.93;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1302,138,0 chrVII 408864 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.95;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1569,168,0 chrVII 408942 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.91;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1108,120,0 chrVII 409104 . T C 824 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:857,96,0 chrVII 410420 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.6096;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.68;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1489,159,0 chrVII 410531 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.8141;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.87;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1316,147,0 chrVII 410597 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.01;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1714,180,0 chrVII 411293 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.23;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1264,141,0 chrVII 411573 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=16.05;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1333,144,0 chrVII 412597 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.45;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1669,183,0 chrVII 412672 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.91;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2051,231,0 chrVII 413263 . T A 2141 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.12;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2174,231,0 chrVII 413267 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.60;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2079,231,0 chrVII 413728 . C G 1349 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.08;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1382,153,0 chrVII 413797 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.39;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1175,126,0 chrVII 414265 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.44;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2453,258,0 chrVII 414518 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.10;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1790,198,0 chrVII 414653 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.17;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2489,270,0 chrVII 414872 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.75;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1860,201,0 chrVII 415124 . A G 1695 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.54;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1728,192,0 chrVII 415592 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=86;Dels=0.00;FS=3.854;HaplotypeScore=11.1904;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.469;QD=18.52;ReadPosRankSum=1.691;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1626,189,0 chrVII 416298 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1506,165,0 chrVII 417322 . A T 1243 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.55;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1276,138,0 chrVII 417363 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.44;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1321,147,0 chrVII 417671 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.05;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1801,201,0 chrVII 417821 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.76;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1436,159,0 chrVII 418479 . C G 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,204,0 chrVII 418724 . G C 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.832;DP=79;Dels=0.00;FS=44.583;HaplotypeScore=22.6266;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=-0.920;QD=1.14;ReadPosRankSum=-2.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,17:79:99:120,0,734 chrVII 419223 . C A 1800 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.95;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1833,195,0 chrVII 419249 . C G 1471 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.15;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1504,165,0 chrVII 419368 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2042,237,0 chrVII 419557 . C T 2633 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.58;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2666,285,0 chrVII 419731 . T A 2355 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8254;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.15;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2388,267,0 chrVII 420974 . T C 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=48;Dels=0.00;FS=4.960;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-1.216;QD=18.23;ReadPosRankSum=1.659;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:908,105,0 chrVII 421027 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.57;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1288,138,0 chrVII 421036 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.32;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1352,147,0 chrVII 421235 . T C 2147 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.34;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2180,243,0 chrVII 421272 . A G 1694 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.00;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1727,195,0 chrVII 421291 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.66;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1216,129,0 chrVII 421299 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=14.97;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:946,108,0 chrVII 421321 . C T 666 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=14.17;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:699,75,0 chrVII 421465 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.77;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1252,135,0 chrVII 421471 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=60;Dels=0.00;FS=12.861;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=0.339;QD=19.38;ReadPosRankSum=2.646;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1196,135,0 chrVII 421478 . T G 1045 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.66;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1078,123,0 chrVII 421865 . A G 1099 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.28;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1132,129,0 chrVII 421889 . T C 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.319;QD=16.97;ReadPosRankSum=2.283;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1034,117,0 chrVII 422059 . T G 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=65;Dels=0.00;FS=4.307;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.006;QD=20.45;ReadPosRankSum=1.621;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,61:65:99:1362,153,0 chrVII 422171 . A G 2298 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.98;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2331,264,0 chrVII 422386 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.26;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1160,123,0 chrVII 422434 . A G 881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-1.347;QD=16.31;ReadPosRankSum=1.668;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:914,105,0 chrVII 422440 . G C 849 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=15.16;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:882,99,0 chrVII 422454 . C G 1166 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=16.19;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1199,135,0 chrVII 422564 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2936;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.71;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1876,207,0 chrVII 422588 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=10.907;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.233;QD=19.78;ReadPosRankSum=2.340;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1813,201,0 chrVII 422613 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.95;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1814,192,0 chrVII 422776 . T C 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=6.558;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=1.613;QD=21.81;ReadPosRankSum=2.325;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1320,150,0 chrVII 422836 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=22.65;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1256,132,0 chrVII 422866 . T A 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=46;Dels=0.00;FS=7.912;HaplotypeScore=5.6188;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.817;QD=19.28;ReadPosRankSum=2.338;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:920,99,0 chrVII 422918 . C G 1151 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.84;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1184,135,0 chrVII 422951 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.96;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1373,153,0 chrVII 423035 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.212;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.181;QD=19.40;ReadPosRankSum=1.614;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1760,198,0 chrVII 423063 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.71;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1813,192,0 chrVII 423215 . T C 578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;DP=64;Dels=0.05;FS=2.019;HaplotypeScore=10.2759;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=0.335;QD=9.03;ReadPosRankSum=2.724;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:4,57:61:51:611,51,0 chrVII 423218 . A T 654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=59;Dels=0.02;FS=4.624;HaplotypeScore=11.3771;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=1.553;QD=11.08;ReadPosRankSum=1.673;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:75:687,75,0 chrVII 423339 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.82;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2041,216,0 chrVII 423906 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.90;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1106,120,0 chrVII 424042 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.18;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1297,144,0 chrVII 424314 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.50;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1490,156,0 chrVII 424620 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:72:99:1375,147,0 chrVII 424652 . A C 1286 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.08;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1319,147,0 chrVII 424942 . A T 851 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:884,99,0 chrVII 425181 . C G 1034 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.00;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1067,120,0 chrVII 425227 . G C 941 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:974,108,0 chrVII 425446 . A C 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6435;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.072;QD=17.17;ReadPosRankSum=1.677;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1132,129,0 chrVII 425497 . A G 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.326;QD=18.94;ReadPosRankSum=1.682;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1359,153,0 chrVII 426136 . C T 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=5.593;HaplotypeScore=4.9912;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-1.414;QD=17.82;ReadPosRankSum=1.294;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1601,174,0 chrVII 426148 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.43;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1689,195,0 chrVII 426211 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=7.074;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=2.025;QD=17.59;ReadPosRankSum=2.405;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:1986,231,0 chrVII 426538 . G T 1250 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=15.24;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1283,138,0 chrVII 426675 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.03;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1487,168,0 chrVII 426712 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8932;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.44;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1258,135,0 chrVII 426850 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1584,180,0 chrVII 426969 . G T 836 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:869,96,0 chrVII 427263 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1828,204,0 chrVII 427600 . A G 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.137;DP=115;Dels=0.00;FS=9.164;HaplotypeScore=18.2811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.008;QD=18.28;ReadPosRankSum=3.320;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:4,111:115:99:2135,246,0 chrVII 427741 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.9337;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.77;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1710,186,0 chrVII 428022 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1555,183,0 chrVII 428152 . A G 43.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=14.66;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:76,9,0 chrVII 428441 . T C 443 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.15;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:54:476,54,0 chrVII 428542 . C G 1067 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1100,126,0 chrVII 428698 . A T 673 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.93;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:706,75,0 chrVII 428728 . T A 725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.235;DP=42;Dels=0.00;FS=2.532;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.836;QD=17.26;ReadPosRankSum=3.235;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:4,38:42:81:758,81,0 chrVII 428729 . T C 654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.685;QD=15.21;ReadPosRankSum=1.652;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:78:687,78,0 chrVII 428940 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.39;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2384,252,0 chrVII 429150 . G C 1456 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.40;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1489,165,0 chrVII 429271 . C A 1484 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.78;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1517,165,0 chrVII 429278 . A G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.217;QD=16.52;ReadPosRankSum=1.602;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1355,156,0 chrVII 429467 . A T 1471 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.72;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1504,159,0 chrVII 429518 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.21;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1645,183,0 chrVII 429706 . A C 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=3.153;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.546;QD=19.54;ReadPosRankSum=1.695;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1909,213,0 chrVII 429811 . T C 152.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=120.7426;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.853;QD=1.17;ReadPosRankSum=1.679;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:21:185,21,0 chrVII 429941 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.98;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1058,117,0 chrVII 430401 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1305,138,0 chrVII 430496 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.68;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:958,108,0 chrVII 430559 . A G 963 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.06;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:996,114,0 chrVII 430810 . T C 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.681;DP=108;Dels=0.01;FS=2.346;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.328;QD=22.38;ReadPosRankSum=3.696;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:5,101:107:99:2450,270,0 chrVII 430867 . G A 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=75.2511;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.307;QD=20.12;ReadPosRankSum=1.307;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2166,231,0 chrVII 431116 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=15.77;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1626,183,0 chrVII 431168 . G C 1488 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=15.66;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1521,165,0 chrVII 431782 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.015;QD=21.37;ReadPosRankSum=1.692;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1892,213,0 chrVII 431867 . A G 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=97;Dels=0.00;FS=9.205;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.028;QD=20.33;ReadPosRankSum=3.364;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:4,92:97:99:2005,225,0 chrVII 432340 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.20;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1969,225,0 chrVII 432466 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.507;QD=17.30;ReadPosRankSum=1.690;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1469,165,0 chrVII 432654 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=14.8941;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.39;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2215,237,0 chrVII 432898 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=15.25;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:902,102,0 chrVII 432925 . A T 790 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.12;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:823,90,0 chrVII 432934 . A G 800 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.33;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:833,93,0 chrVII 433234 . A G 463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=36;Dels=0.00;FS=3.081;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=1.596;QD=12.86;ReadPosRankSum=2.297;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:2,30:36:57:496,57,0 chrVII 433416 . T A 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.431;QD=21.77;ReadPosRankSum=1.582;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1056,114,0 chrVII 433865 . A T 668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=12.483;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.829;QD=20.87;ReadPosRankSum=2.297;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:2,30:32:81:701,81,0 chrVII 434327 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.5619;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=21.08;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1888,210,0 chrVII 434361 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=100;Dels=0.00;FS=6.088;HaplotypeScore=16.3666;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.316;QD=21.42;ReadPosRankSum=2.929;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:3,96:100:99:2175,246,0 chrVII 434403 . A G 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.728;QD=21.09;ReadPosRankSum=1.700;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2290,261,0 chrVII 434447 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=125;Dels=0.00;FS=10.022;HaplotypeScore=3.8556;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.667;QD=17.26;ReadPosRankSum=2.878;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:3,121:125:99:2191,249,0 chrVII 434505 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=96;Dels=0.02;FS=6.108;HaplotypeScore=17.0315;MLEAC=2;MLEAF=1.00;MQ=39.88;MQ0=0;MQRankSum=-1.721;QD=12.94;ReadPosRankSum=2.925;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1275,141,0 chrVII 434580 . G A 221.01 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=3.40;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:27:254,27,0 chrVII 434601 . A G 561 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=6.10;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:63:594,63,0 chrVII 434603 . T C 564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=8.661;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;MQRankSum=-1.821;QD=6.00;ReadPosRankSum=2.397;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:63:597,63,0 chrVII 434630 . A G 851 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=8.34;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:884,99,0 chrVII 434654 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=14.21;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1141,123,0 chrVII 434679 . C A 884 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=12.81;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:917,99,0 chrVII 434704 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=9.95;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:859,99,0 chrVII 434720 . A C 750 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=10.00;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:87:783,87,0 chrVII 434752 . C G 801 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5789;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=9.42;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:93:834,93,0 chrVII 434758 . C A 985 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=11.32;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1018,108,0 chrVII 434905 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.51;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1606,171,0 chrVII 435041 . G C 1227 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=16.81;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1260,141,0 chrVII 435054 . A G 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=-1.170;QD=15.59;ReadPosRankSum=1.685;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1187,138,0 chrVII 435126 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.05;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1595,180,0 chrVII 435215 . A C 1886 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.57;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1919,219,0 chrVII 435340 . T C 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.575;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.648;QD=22.78;ReadPosRankSum=1.648;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:967,108,0 chrVII 435457 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.54;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1850,204,0 chrVII 435545 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6285;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.38;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1957,219,0 chrVII 435577 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=3.266;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.198;QD=17.10;ReadPosRankSum=1.683;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1247,141,0 chrVII 435609 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=16.34;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:850,90,0 chrVII 435691 . T C 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=51;Dels=0.00;FS=2.986;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.421;QD=18.98;ReadPosRankSum=2.352;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:2,48:51:99:1001,111,0 chrVII 435692 . T C 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=52;Dels=0.00;FS=2.893;HaplotypeScore=6.7482;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.529;QD=17.38;ReadPosRankSum=2.354;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:2,49:52:99:937,105,0 chrVII 435931 . T C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.674;QD=21.47;ReadPosRankSum=1.497;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1300,150,0 chrVII 436038 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.22;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1426,156,0 chrVII 436123 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.44;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1484,162,0 chrVII 436154 . C A 1793 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1826,192,0 chrVII 436337 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1031,111,0 chrVII 436601 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.38;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1763,189,0 chrVII 436628 . C T 1245 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.23;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1278,138,0 chrVII 436774 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.96;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1710,189,0 chrVII 436809 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.04;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1695,189,0 chrVII 436994 . G A 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.866;QD=21.87;ReadPosRankSum=1.299;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2133,231,0 chrVII 437195 . A C 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.781;QD=17.75;ReadPosRankSum=1.461;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:88:938,88,0 chrVII 437304 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.66;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1190,129,0 chrVII 437336 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.01;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1459,165,0 chrVII 437349 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.18;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1433,159,0 chrVII 438009 . G T 2014 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.69;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2047,222,0 chrVII 438031 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.09;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1678,189,0 chrVII 438333 . G T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=25.24;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:4064,432,0 chrVII 438728 . A T 1643 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=13.47;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1676,192,0 chrVII 438750 . C A 2133 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.48;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2166,234,0 chrVII 439216 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.050;QD=21.80;ReadPosRankSum=1.627;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1472,165,0 chrVII 439277 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.98;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1376,147,0 chrVII 439789 . A G 1532 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1565,177,0 chrVII 439864 . A T 1041 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1074,117,0 chrVII 440586 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=18.39;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:934,108,0 chrVII 440605 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=19.02;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,102,0 chrVII 440621 . C T 722 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=39.6268;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=0;QD=14.44;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:81:755,81,0 chrVII 440626 . C T 576 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=12.80;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:609,69,0 chrVII 440636 . A T 544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;MQRankSum=0.269;QD=12.09;ReadPosRankSum=1.655;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:63:577,63,0 chrVII 440671 . A G 556 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=11.83;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:66:589,66,0 chrVII 440683 . C A 571 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=11.42;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:604,66,0 chrVII 440689 . A C 489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;MQRankSum=0.817;QD=9.23;ReadPosRankSum=1.602;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:60:522,60,0 chrVII 440693 . T A 474 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.540;QD=8.32;ReadPosRankSum=1.668;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:57:507,57,0 chrVII 440833 . C A 1284 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.40;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1317,141,0 chrVII 440838 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.68;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1194,132,0 chrVII 440879 . G C 1093 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.03;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.84;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1126,129,0 chrVII 440908 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=16.62;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:964,102,0 chrVII 441863 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=24.26;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2483,267,0 chrVII 441923 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.97;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1725,186,0 chrVII 442184 . A G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DP=140;Dels=0.00;FS=7.982;HaplotypeScore=7.8094;MLEAC=1;MLEAF=0.500;MQ=51.71;MQ0=0;MQRankSum=-3.683;QD=0.16;ReadPosRankSum=-3.726;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:115,25:140:53:53,0,2170 chrVII 442196 . G A 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.154;DP=136;Dels=0.00;FS=30.848;HaplotypeScore=6.8429;MLEAC=1;MLEAF=0.500;MQ=49.43;MQ0=0;MQRankSum=-5.188;QD=1.03;ReadPosRankSum=-3.629;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:94,42:136:99:170,0,1727 chrVII 442208 . A G 391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;DP=136;Dels=0.00;FS=31.555;HaplotypeScore=5.5875;MLEAC=1;MLEAF=0.500;MQ=47.98;MQ0=0;MQRankSum=-4.397;QD=2.88;ReadPosRankSum=0.075;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:79,57:136:99:421,0,1397 chrVII 442220 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.5629;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-0.792;QD=14.32;ReadPosRankSum=1.705;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:1880,213,0 chrVII 442235 . C A 339.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.052;DP=114;Dels=0.00;FS=5.020;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=45.82;MQ0=0;MQRankSum=-1.208;QD=2.97;ReadPosRankSum=-6.107;SB=-2.400e+02 GT:AD:DP:GQ:PL 0/1:78,35:114:99:369,0,992 chrVII 442238 . C A 249.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.399;DP=108;Dels=0.00;FS=4.178;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=45.75;MQ0=0;MQRankSum=-2.275;QD=2.31;ReadPosRankSum=-5.563;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:80,28:108:99:279,0,982 chrVII 442299 . C G 1345 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.07;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1378,159,0 chrVII 442339 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.83;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1495,174,0 chrVII 442501 . C G 3088 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.54;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3121,348,0 chrVII 442559 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.60;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2670,291,0 chrVII 442571 . T G 2204 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.84;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2237,246,0 chrVII 442784 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.67;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1823,201,0 chrVII 442910 . G C 1933 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.78;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1966,222,0 chrVII 442935 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.07;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,100:105:99:2245,249,0 chrVII 442968 . A T 2295 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.42;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2328,258,0 chrVII 443007 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.06;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2265,255,0 chrVII 443095 . G A 917 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.37;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:950,108,0 chrVII 443161 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.75;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1091,117,0 chrVII 443602 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.65;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1845,207,0 chrVII 443639 . G T 1930 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.53;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1963,219,0 chrVII 443945 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.91;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2377,264,0 chrVII 443969 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.35;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2015,213,0 chrVII 443972 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=17.15;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1885,204,0 chrVII 444070 . C A 2944 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.97;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2977,318,0 chrVII 444107 . C A 2942 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.87;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2975,333,0 chrVII 444182 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.20;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1999,216,0 chrVII 444185 . G C 1768 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.33;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1801,204,0 chrVII 444236 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=15.75;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1687,186,0 chrVII 444248 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.318;QD=16.02;ReadPosRankSum=1.697;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1603,186,0 chrVII 444302 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.5784;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.63;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1814,201,0 chrVII 444466 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0934;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.52;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2512,282,0 chrVII 444974 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1229,129,0 chrVII 445067 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.21;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1417,159,0 chrVII 445136 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.84;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1554,168,0 chrVII 445454 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.96;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1410,159,0 chrVII 445513 . C G 1208 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.57;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1241,138,0 chrVII 445775 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.69;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1640,180,0 chrVII 446059 . T C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.511;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.086;QD=19.85;ReadPosRankSum=0.806;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2058,234,0 chrVII 446205 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.93;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1959,210,0 chrVII 446220 . A T 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=104;Dels=0.00;FS=4.331;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.992;QD=16.29;ReadPosRankSum=1.497;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1727,189,0 chrVII 446369 . G A 2472 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.88;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2505,267,0 chrVII 446399 . C T 2303 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.52;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2336,255,0 chrVII 446571 . G A 1878 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.64;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1911,201,0 chrVII 446910 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2218;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.12;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2025,219,0 chrVII 447516 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.36;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1756,195,0 chrVII 447761 . G C 2798 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7961;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.13;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2831,318,0 chrVII 448106 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=15.51;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1972,222,0 chrVII 448116 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=14.90;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1851,207,0 chrVII 449091 . C T 2856 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.26;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2889,318,0 chrVII 449133 . C T 2732 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.94;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2765,300,0 chrVII 449184 . T G 1922 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.30;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1955,228,0 chrVII 449454 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.42;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2033,219,0 chrVII 449525 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=15.40;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1327,153,0 chrVII 449549 . T C 1144 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.34;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1177,135,0 chrVII 449637 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4535;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.41;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2054,225,0 chrVII 449763 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=78;Dels=0.00;FS=10.275;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.624;QD=18.96;ReadPosRankSum=2.910;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1512,174,0 chrVII 449774 . A G 1191 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=17.26;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1224,135,0 chrVII 449776 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.25;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1154,126,0 chrVII 449791 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=15.50;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:870,96,0 chrVII 449829 . C T 655 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=14.24;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:81:688,81,0 chrVII 449895 . G A 546 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=11.37;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:63:579,63,0 chrVII 450245 . G A 1466 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1499,171,0 chrVII 450623 . C G 2178 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=15.1072;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.78;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2211,243,0 chrVII 450992 . G C 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1736,195,0 chrVII 451307 . A G 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=101;Dels=0.00;FS=10.567;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.808;QD=20.11;ReadPosRankSum=2.869;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:3,97:101:99:2064,234,0 chrVII 451346 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2050,222,0 chrVII 451694 . G A 2531 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.82;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2564,279,0 chrVII 451921 . T C 2740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=145;Dels=0.00;FS=5.756;HaplotypeScore=11.4734;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.699;QD=18.90;ReadPosRankSum=2.770;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:3,141:145:99:2773,312,0 chrVII 452209 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.40;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2225,234,0 chrVII 452296 . A C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.047;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4914;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.696;QD=17.32;ReadPosRankSum=1.299;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1696,192,0 chrVII 453309 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.1974;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.27;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2261,252,0 chrVII 455013 . G A 1069 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1102,123,0 chrVII 455625 . A G 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.986;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.787;QD=18.51;ReadPosRankSum=2.361;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1569,177,0 chrVII 455699 . G A 2380 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.44;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2413,258,0 chrVII 455774 . T C 2477 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.5540;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.12;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2510,291,0 chrVII 455815 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0229;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.15;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2279,258,0 chrVII 456180 . T C 1908 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.20;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1941,219,0 chrVII 456426 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.20;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1199,129,0 chrVII 456812 . G A 2439 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.39;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2472,261,0 chrVII 457262 . C A 2329 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=10.1660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.39;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2362,252,0 chrVII 457427 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.80;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2072,237,0 chrVII 457688 . C G 2231 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.48;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2264,252,0 chrVII 457721 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.13;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1684,186,0 chrVII 459245 . G C 1296 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.94;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1329,150,0 chrVII 459352 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.31;SB=-1.919e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2698,291,0 chrVII 459355 . A G 2475 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=16.72;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2508,279,0 chrVII 459382 . T G 2700 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=16.46;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,164:164:99:2733,309,0 chrVII 459691 . G C 2626 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.2542;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.05;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2659,300,0 chrVII 459767 . T C 2478 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8235;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=17.96;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2511,285,0 chrVII 459848 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7996;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.82;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1865,216,0 chrVII 460066 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.33;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2043,228,0 chrVII 460330 . T C 1893 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.76;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1926,219,0 chrVII 460823 . C A 2505 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.0871;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.23;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2538,270,0 chrVII 460947 . A G 1988 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.49;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2021,225,0 chrVII 461146 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=2.683;HaplotypeScore=6.4535;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.434;QD=18.22;ReadPosRankSum=2.403;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1964,222,0 chrVII 461612 . T C 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=21.39;ReadPosRankSum=1.689;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1787,204,0 chrVII 461875 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.81;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2128,228,0 chrVII 462190 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.428;QD=21.89;ReadPosRankSum=1.691;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1894,216,0 chrVII 462196 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.03;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1829,195,0 chrVII 462208 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.03;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1589,180,0 chrVII 462940 . T C 1959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.994;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.448;QD=21.53;ReadPosRankSum=2.369;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1992,228,0 chrVII 463064 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1659,189,0 chrVII 463348 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.36;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1524,174,0 chrVII 463840 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.900;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.321;QD=19.86;ReadPosRankSum=1.561;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1642,186,0 chrVII 464952 . T C 649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=49;Dels=0.00;FS=3.104;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.748;QD=13.24;ReadPosRankSum=2.348;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,46:49:78:682,78,0 chrVII 464972 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.23;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:796,93,0 chrVII 465092 . T G 1244 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.06;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1277,147,0 chrVII 465292 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.77;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1174,123,0 chrVII 466029 . A T 1958 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.31;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1991,216,0 chrVII 466092 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.07;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2175,246,0 chrVII 467277 . A T 2321 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.44;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2354,252,0 chrVII 467325 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.37;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2463,261,0 chrVII 467379 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.57;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1259,132,0 chrVII 467387 . T C 910 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=14.68;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:943,108,0 chrVII 467473 . A G 1099 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.91;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1132,126,0 chrVII 467683 . A G 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.080;QD=16.91;ReadPosRankSum=1.682;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1200,135,0 chrVII 467730 . C T 122.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:18:155,18,0 chrVII 469333 . A T 1405 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.97;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1438,153,0 chrVII 469334 . T G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.019;QD=19.21;ReadPosRankSum=1.630;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1339,153,0 chrVII 469926 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.79;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1031,114,0 chrVII 470028 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.26;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1670,189,0 chrVII 470124 . A G 1023 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.95;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1056,117,0 chrVII 470499 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.31;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1152,123,0 chrVII 470892 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.2480;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.07;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1763,189,0 chrVII 471114 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.26;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1861,204,0 chrVII 471558 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.07;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1406,156,0 chrVII 471642 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.33;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1876,201,0 chrVII 471870 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.09;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1680,183,0 chrVII 472313 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.56;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1613,171,0 chrVII 472321 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=96;Dels=0.00;FS=13.087;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.248;QD=15.58;ReadPosRankSum=3.364;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1529,171,0 chrVII 472609 . A G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.420;DP=100;Dels=0.00;FS=3.372;HaplotypeScore=14.2174;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.594;QD=21.08;ReadPosRankSum=0.589;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2141,240,0 chrVII 472821 . G C 3094 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.0734;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.91;SB=-1.795e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3127,354,0 chrVII 472908 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2998;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.62;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1956,225,0 chrVII 473004 . G T 2280 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.3211;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.54;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2313,252,0 chrVII 473949 . A T 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.01;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.408;QD=17.88;ReadPosRankSum=1.704;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2268,243,0 chrVII 473951 . G T 2242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.944;QD=18.08;ReadPosRankSum=1.619;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2275,240,0 chrVII 474292 . A G 2910 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.66;SB=-1.767e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2943,336,0 chrVII 474296 . A G 2865 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.10;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2898,330,0 chrVII 474400 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.00;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2490,267,0 chrVII 475726 . T C 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.345;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.091;QD=19.52;ReadPosRankSum=1.668;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1087,107,0 chrVII 475763 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.64;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1391,159,0 chrVII 475766 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.02;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1493,159,0 chrVII 476814 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.65;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1762,189,0 chrVII 477384 . T C 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=3.039;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.629;QD=18.73;ReadPosRankSum=2.343;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1775,204,0 chrVII 478308 . A T 2270 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.7220;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.91;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2303,246,0 chrVII 478509 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0650;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.47;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1511,162,0 chrVII 478542 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.05;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1312,141,0 chrVII 478940 . A G 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.885;QD=20.64;ReadPosRankSum=1.655;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:962,108,0 chrVII 479125 . C A 1042 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.28;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1075,120,0 chrVII 479241 . A G 772 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.38;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:805,90,0 chrVII 479282 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=18.24;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:75:708,75,0 chrVII 479290 . C G 635 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=17.64;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:75:668,75,0 chrVII 479326 . A T 605 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.52;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:72:638,72,0 chrVII 479349 . A G 884 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.578;QD=19.64;ReadPosRankSum=2.341;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,43:45:99:917,102,0 chrVII 479356 . T C 886 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.14;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:919,99,0 chrVII 479387 . T A 740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=42;Dels=0.00;FS=10.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.559;QD=17.62;ReadPosRankSum=1.646;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:84:773,84,0 chrVII 479589 . C T 165.06 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:21:198,21,0 chrVII 479736 . T C 324 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=12.46;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:39:357,39,0 chrVII 479741 . C T 394 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.59;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:427,48,0 chrVII 480192 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.85;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,183,0 chrVII 480201 . G T 1669 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.86;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1702,186,0 chrVII 480357 . A T 1270 SnpCluster AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=11.14;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1303,141,0 chrVII 480363 . T G 1108 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=10.55;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1141,129,0 chrVII 480365 . T C 1118 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=10.75;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1151,129,0 chrVII 480366 . A G 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=10.61;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1136,129,0 chrVII 480369 . T C 1077 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=1.219;QD=9.97;ReadPosRankSum=1.700;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1110,126,0 chrVII 480374 . C T 888 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=3.7446;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=10.45;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:921,105,0 chrVII 480375 . T A 1025 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=88;Dels=0.00;FS=18.119;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;MQRankSum=1.112;QD=11.65;ReadPosRankSum=2.895;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1058,117,0 chrVII 480378 . G A 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=10.95;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1084,117,0 chrVII 480381 . C T 1087 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=10.98;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1120,126,0 chrVII 480384 . A G 1050 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=10.00;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1083,120,0 chrVII 480426 . G T 2079 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=17.18;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2112,228,0 chrVII 480515 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.40;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1849,198,0 chrVII 480612 . A G 2814 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.69;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2847,315,0 chrVII 481763 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.30;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2509,288,0 chrVII 481776 . T C 2423 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=18.93;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2456,282,0 chrVII 482042 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.41;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1780,201,0 chrVII 482421 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.88;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1891,216,0 chrVII 482946 . T G 824 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.54;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:857,96,0 chrVII 482953 . C G 787 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.85;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:90:820,90,0 chrVII 482980 . T C 670 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.30;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:81:703,81,0 chrVII 483014 . A C 754 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.84;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:787,90,0 chrVII 484209 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.24;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1123,120,0 chrVII 484656 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.94;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1264,135,0 chrVII 484663 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.27;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1189,126,0 chrVII 484843 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.11;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1047,114,0 chrVII 485115 . C A 1452 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.69;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1485,159,0 chrVII 485223 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.57;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1070,114,0 chrVII 485256 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.55;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1476,168,0 chrVII 485299 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.14;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1162,129,0 chrVII 485424 . T C 960 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.11;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:993,114,0 chrVII 485909 . A G 786 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=15.12;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:819,96,0 chrVII 486003 . T C 845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=3.129;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=-0.140;QD=22.84;ReadPosRankSum=1.639;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:96:878,96,0 chrVII 487305 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.97;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1399,153,0 chrVII 487329 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=16.65;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1581,171,0 chrVII 487642 . G T 288.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DP=38;Dels=0.00;FS=9.422;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-0.730;QD=7.58;ReadPosRankSum=1.664;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:19,19:38:99:318,0,346 chrVII 487937 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=11.5092;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.55;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1389,147,0 chrVII 489734 . T C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.622;QD=20.83;ReadPosRankSum=1.677;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1366,156,0 chrVII 489944 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.58;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2065,231,0 chrVII 490539 . C G 2318 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2351,264,0 chrVII 491698 . C A 1415 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.91;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1448,156,0 chrVII 491753 . T A 1680 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.71;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1713,180,0 chrVII 492204 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.11;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1743,189,0 chrVII 492231 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.95;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1689,183,0 chrVII 493773 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.81;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1781,207,0 chrVII 494624 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.31;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1525,174,0 chrVII 494636 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.58;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1482,159,0 chrVII 495756 . A G 2868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=145;Dels=0.00;FS=6.611;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.263;QD=19.78;ReadPosRankSum=2.348;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2901,336,0 chrVII 496647 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.32;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1419,150,0 chrVII 496909 . T C 805 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:96:838,96,0 chrVII 496948 . A C 531 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:63:564,63,0 chrVII 497422 . T A 2302 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.49;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2335,252,0 chrVII 497968 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.31;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1077,120,0 chrVII 498734 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.27;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1189,126,0 chrVII 498951 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.30;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1158,132,0 chrVII 499647 . T C 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.299;QD=21.50;ReadPosRankSum=1.660;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1065,117,0 chrVII 499962 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.07;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1602,186,0 chrVII 500228 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1559,177,0 chrVII 500434 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.34;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1887,216,0 chrVII 500807 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.06;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2108,228,0 chrVII 501606 . T C 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=2.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.930;QD=22.96;ReadPosRankSum=2.397;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2191,246,0 chrVII 502282 . G T 1436 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.10;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1469,162,0 chrVII 502974 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1500,168,0 chrVII 503498 . T C 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.813;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.067;QD=19.60;ReadPosRankSum=1.687;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1542,174,0 chrVII 503570 . C T 2451 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.57;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2484,264,0 chrVII 503654 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2182,246,0 chrVII 504153 . C T 2529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.253;DP=125;Dels=0.00;FS=3.118;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.676;QD=20.23;ReadPosRankSum=1.704;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2562,253,0 chrVII 504254 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.13;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2670,300,0 chrVII 504454 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.29;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1572,171,0 chrVII 504753 . T C 1353 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6678;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.82;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1386,159,0 chrVII 505101 . T G 1850 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.47;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1883,213,0 chrVII 505872 . G C 1699 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.99;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1732,192,0 chrVII 505922 . A T 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=105;Dels=0.00;FS=2.845;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.723;QD=19.11;ReadPosRankSum=2.403;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2040,219,0 chrVII 506019 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.84;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2386,264,0 chrVII 506576 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1213,138,0 chrVII 507137 . A T 2733 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.9102;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.77;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2766,300,0 chrVII 507287 . A T 2460 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.21;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2493,267,0 chrVII 507418 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1561,171,0 chrVII 508084 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.4544;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.15;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2211,255,0 chrVII 508419 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0348;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.65;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1618,183,0 chrVII 508460 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.48;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1659,183,0 chrVII 508794 . G A 135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DP=58;Dels=0.00;FS=67.699;HaplotypeScore=10.1824;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=-0.074;QD=2.33;ReadPosRankSum=-4.293;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:36,22:58:99:165,0,551 chrVII 509895 . T G 1447 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.02;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1480,171,0 chrVII 509926 . T A 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.310;QD=15.18;ReadPosRankSum=1.690;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1278,141,0 chrVII 509962 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.26;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1694,180,0 chrVII 510416 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=80;Dels=0.00;FS=6.084;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.321;QD=16.67;ReadPosRankSum=2.911;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,76:80:99:1367,156,0 chrVII 510553 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.76;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2088,234,0 chrVII 510755 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.59;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1972,210,0 chrVII 510802 . A T 1955 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.55;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1988,216,0 chrVII 511398 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1713,189,0 chrVII 511436 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8404;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1894,213,0 chrVII 512075 . A G 3671.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=181;Dels=0.00;FS=5.764;HaplotypeScore=14.2860;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.928;QD=20.28;ReadPosRankSum=2.928;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:3,178:181:99:3671,405,0 chrVII 512135 . T C 2997 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.60;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3030,342,0 chrVII 512279 . A G 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;DP=117;Dels=0.00;FS=10.094;HaplotypeScore=10.9825;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.670;QD=21.73;ReadPosRankSum=2.783;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2575,294,0 chrVII 512812 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.76;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1922,219,0 chrVII 512835 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.88;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1862,204,0 chrVII 512884 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.654;QD=19.22;ReadPosRankSum=0.603;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1763,201,0 chrVII 513085 . T A 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.428;QD=20.82;ReadPosRankSum=1.658;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1990,210,0 chrVII 513154 . C A 2351 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=18.9718;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.92;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2384,267,0 chrVII 514497 . A G 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.787;QD=19.19;ReadPosRankSum=1.687;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1511,168,0 chrVII 514511 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=18.16;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1395,153,0 chrVII 514581 . C G 1481 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.2088;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.75;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1514,171,0 chrVII 514885 . A T 2074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=93;Dels=0.00;FS=2.972;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.675;QD=22.30;ReadPosRankSum=2.344;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2107,222,0 chrVII 514934 . T C 2025 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.54;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2058,228,0 chrVII 515205 . G A 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.856;QD=22.87;ReadPosRankSum=1.607;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1931,210,0 chrVII 515594 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.92;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1607,174,0 chrVII 515649 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.15;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1894,207,0 chrVII 517302 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=2.886;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.036;QD=17.57;ReadPosRankSum=2.377;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1825,207,0 chrVII 517365 . T A 1297 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=14.25;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1330,153,0 chrVII 517587 . T C 1925 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1384;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=15.52;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1958,222,0 chrVII 517605 . C G 1670 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.02;FS=0.000;HaplotypeScore=27.3795;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=14.40;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1703,189,0 chrVII 517615 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.78;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1659,180,0 chrVII 517674 . A G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.878;QD=16.03;ReadPosRankSum=0.214;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1203,135,0 chrVII 517686 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.64;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1248,138,0 chrVII 517761 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=16.80;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1864,210,0 chrVII 517812 . C T 2021 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=16.98;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2054,225,0 chrVII 517815 . T C 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.587;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.204;QD=15.03;ReadPosRankSum=0.117;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1807,186,0 chrVII 517876 . A G 1727 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=16.29;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1760,198,0 chrVII 517902 . A G 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;MQRankSum=-1.275;QD=15.30;ReadPosRankSum=1.699;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1655,186,0 chrVII 517909 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8741;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=13.97;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1542,171,0 chrVII 518049 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.76;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2290,243,0 chrVII 518080 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5006;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=16.25;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1739,195,0 chrVII 518083 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9052;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=15.81;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1725,192,0 chrVII 518117 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.58;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2206,240,0 chrVII 518259 . T C 2202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.686;QD=19.49;ReadPosRankSum=2.384;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2235,249,0 chrVII 518306 . A G 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=6.306;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.598;QD=18.56;ReadPosRankSum=2.314;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2056,228,0 chrVII 518449 . A T 2846 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.08;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2879,309,0 chrVII 521128 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.41;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1319,141,0 chrVII 521329 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2255,237,0 chrVII 522036 . A C 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=2.678;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.817;QD=17.72;ReadPosRankSum=2.391;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1504,168,0 chrVII 522062 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.33;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1386,150,0 chrVII 522131 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.22;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1272,135,0 chrVII 522677 . T C 983 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.06;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1016,114,0 chrVII 522892 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.78;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1633,174,0 chrVII 522913 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.00;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1533,171,0 chrVII 522987 . T G 682 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=14.83;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:81:715,81,0 chrVII 522988 . T C 651 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=14.80;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:684,78,0 chrVII 523005 . T C 586 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.84;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:619,69,0 chrVII 523077 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=20.85;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1013,108,0 chrVII 523089 . A T 982 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.04;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1015,108,0 chrVII 523190 . G T 1274 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.59;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1307,141,0 chrVII 523348 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=20.36;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1397,153,0 chrVII 523385 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=15.38;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:971,102,0 chrVII 523412 . A G 653 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=11.46;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:78:686,78,0 chrVII 523415 . G T 631 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=11.47;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:72:664,72,0 chrVII 523417 . C T 696 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=12.43;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:81:729,81,0 chrVII 523610 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.49;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2102,237,0 chrVII 524702 . A G 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.915;QD=19.34;ReadPosRankSum=1.693;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1812,210,0 chrVII 524803 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1480,171,0 chrVII 525947 . A G 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.183;QD=22.37;ReadPosRankSum=1.629;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2292,264,0 chrVII 526684 . T C 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=4.437;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.393;QD=18.49;ReadPosRankSum=1.640;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1420,159,0 chrVII 526833 . T A 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010;DP=72;Dels=0.00;FS=13.756;HaplotypeScore=20.2102;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.162;QD=10.46;ReadPosRankSum=3.279;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:90:786,90,0 chrVII 526954 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.78;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1710,195,0 chrVII 527159 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.88;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1808,207,0 chrVII 527392 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=17.79;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1723,195,0 chrVII 527396 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=15.98;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1615,186,0 chrVII 527439 . C G 1195 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=12.99;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1228,141,0 chrVII 527606 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.46;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1434,156,0 chrVII 528099 . T A 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=2.752;HaplotypeScore=10.3998;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.350;QD=21.95;ReadPosRankSum=2.412;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2886,315,0 chrVII 528189 . A G 2911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=3.185;HaplotypeScore=8.2931;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.286;QD=22.39;ReadPosRankSum=1.678;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:1,126:130:99:2944,336,0 chrVII 528447 . A C 1574 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.96;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1607,180,0 chrVII 528489 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.0806;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=15.80;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2197,240,0 chrVII 528501 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.4051;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=15.40;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2250,249,0 chrVII 528828 . C T 2109 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.68;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2142,237,0 chrVII 529158 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.22;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2233,255,0 chrVII 529383 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=5.367;HaplotypeScore=4.0697;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.459;QD=22.76;ReadPosRankSum=1.703;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2696,309,0 chrVII 529563 . C T 2528 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=19.91;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2561,282,0 chrVII 529630 . A G 2418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=-1.244;QD=15.40;ReadPosRankSum=1.710;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:2451,276,0 chrVII 529644 . A T 2778 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=15.8764;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=15.02;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:2811,306,0 chrVII 529966 . T C 733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;DP=157;Dels=0.01;FS=3.030;HaplotypeScore=16.3698;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;MQRankSum=0.404;QD=4.67;ReadPosRankSum=1.974;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:2,153:155:87:766,87,0 chrVII 530001 . C A 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.717;DP=370;Dels=0.01;FS=0.000;HaplotypeScore=201.8053;MLEAC=1;MLEAF=0.500;MQ=36.94;MQ0=0;MQRankSum=-6.873;QD=0.12;ReadPosRankSum=-3.835;SB=-7.800e+02 GT:AD:DP:GQ:PL 0/1:267,101:368:76:76,0,1400 chrVII 530016 . A C 1875 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.986;DP=395;Dels=0.00;FS=2.301;HaplotypeScore=282.9838;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;MQRankSum=1.907;QD=4.75;ReadPosRankSum=-3.276;SB=-3.596e+03 GT:AD:DP:GQ:PL 1/1:65,328:394:99:1908,113,0 chrVII 530018 . C T 218.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.760;DP=395;Dels=0.00;FS=6.054;HaplotypeScore=286.0207;MLEAC=1;MLEAF=0.500;MQ=36.83;MQ0=0;MQRankSum=-7.388;QD=0.55;ReadPosRankSum=-0.759;SB=-1.218e+03 GT:AD:DP:GQ:PL 0/1:254,141:395:99:248,0,1450 chrVII 530034 . A C 528.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.025;DP=411;Dels=0.00;FS=10.335;HaplotypeScore=71.9167;MLEAC=1;MLEAF=0.500;MQ=38.01;MQ0=0;MQRankSum=-5.475;QD=1.28;ReadPosRankSum=3.038;SB=-1.889e+03 GT:AD:DP:GQ:PL 0/1:186,224:410:99:558,0,1233 chrVII 530040 . A C 664.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.854;DP=415;Dels=0.00;FS=4.374;HaplotypeScore=138.3920;MLEAC=1;MLEAF=0.500;MQ=38.30;MQ0=0;MQRankSum=-5.293;QD=1.60;ReadPosRankSum=5.215;SB=-2.288e+03 GT:AD:DP:GQ:PL 0/1:162,250:414:99:694,0,949 chrVII 530046 . A C 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.871;DP=385;Dels=0.04;FS=8.045;HaplotypeScore=214.4404;MLEAC=1;MLEAF=0.500;MQ=38.40;MQ0=0;MQRankSum=-2.661;QD=1.01;ReadPosRankSum=-9.928;SB=-8.200e+02 GT:AD:DP:GQ:PL 0/1:243,128:371:99:419,0,991 chrVII 530308 . A G 2910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;MQRankSum=-1.217;QD=16.63;ReadPosRankSum=1.712;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,174:175:99:2943,330,0 chrVII 530457 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.14;SB=-1.590e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2739,297,0 chrVII 530472 . A T 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.595;HaplotypeScore=7.9452;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=1.266;QD=22.67;ReadPosRankSum=1.674;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2731,294,0 chrVII 530543 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4133;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.23;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2145,231,0 chrVII 530805 . A T 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.854;QD=17.83;ReadPosRankSum=1.683;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1299,141,0 chrVII 531261 . G T 744 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.80;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:777,81,0 chrVII 531322 . G A 651 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.11;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:684,72,0 chrVII 531684 . A T 615 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.788;QD=18.64;ReadPosRankSum=1.628;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,32:33:69:648,69,0 chrVII 531741 . A C 559 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.47;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:69:592,69,0 chrVII 531976 . T C 884 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:99:917,102,0 chrVII 532330 . T C 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.61;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1445,165,0 chrVII 533872 . C T 771 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.93;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:804,87,0 chrVII 534011 . T C 757 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=11.83;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:90:790,90,0 chrVII 534162 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.90;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1682,192,0 chrVII 534684 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.18;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1304,150,0 chrVII 534914 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1082,123,0 chrVII 535102 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=23.11;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1443,162,0 chrVII 535212 . G T 147.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=1;QD=8.65;SB=-2.607e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:21:180,21,0 chrVII 535536 . T G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=9.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:51,6,0 chrVII 535537 . T A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrVII 535539 . T A 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=4.13;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:56,6,0 chrVII 535692 . A C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=5.131;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;MQRankSum=-1.142;QD=23.64;ReadPosRankSum=1.693;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2113,237,0 chrVII 535761 . G C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=2.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:6:6:48,6,0 chrVII 541833 . A T 1554 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.91;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1587,171,0 chrVII 542099 . A C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.383;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.700;QD=23.63;ReadPosRankSum=1.667;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2585,297,0 chrVII 542283 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.24;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2403,264,0 chrVII 543267 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.00;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2073,225,0 chrVII 543476 . A T 1406 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1439,153,0 chrVII 544219 . A G 720 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.57;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:87:753,87,0 chrVII 544222 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.97;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:800,84,0 chrVII 544286 . T G 727 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.73;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:760,84,0 chrVII 544374 . G A 840 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.15;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:873,93,0 chrVII 544396 . A G 597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=45;Dels=0.00;FS=3.745;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.500;QD=13.27;ReadPosRankSum=1.655;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:69:630,69,0 chrVII 544433 . T C 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-1.023;QD=13.96;ReadPosRankSum=2.355;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:84:759,84,0 chrVII 544436 . A G 728 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=13.74;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:84:761,84,0 chrVII 544446 . A G 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=10.492;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-1.670;QD=14.36;ReadPosRankSum=1.609;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:96:837,96,0 chrVII 544845 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.32;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:951,105,0 chrVII 545138 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.44;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1447,156,0 chrVII 545169 . T A 1175 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.98;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1208,129,0 chrVII 546392 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.48;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2569,279,0 chrVII 547845 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.08;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1238,138,0 chrVII 547962 . T A 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=6.532;HaplotypeScore=4.4600;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.219;QD=20.04;ReadPosRankSum=1.604;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1115,120,0 chrVII 548025 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.03;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1392,153,0 chrVII 548106 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.24;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1045,117,0 chrVII 548209 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1519,171,0 chrVII 548408 . C T 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.7869;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.623;QD=21.52;ReadPosRankSum=-1.039;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2099,228,0 chrVII 548779 . A C 2107 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2140,240,0 chrVII 549148 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:82:99:1718,198,0 chrVII 549656 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.51;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1828,204,0 chrVII 550438 . A C 1309 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.25;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1342,150,0 chrVII 551439 . A G 1635 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.70;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1668,183,0 chrVII 552400 . C A 2274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.353;QD=19.60;ReadPosRankSum=0.192;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2307,261,0 chrVII 553711 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.781;HaplotypeScore=7.2125;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.853;QD=20.06;ReadPosRankSum=2.350;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2039,234,0 chrVII 553877 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.24;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1240,135,0 chrVII 553967 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.80;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2467,282,0 chrVII 554033 . C A 2395 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.77;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:2428,264,0 chrVII 554235 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.07;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1302,141,0 chrVII 554292 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.472;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.279;QD=21.29;ReadPosRankSum=1.650;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1821,201,0 chrVII 554830 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.10;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1825,198,0 chrVII 554853 . T C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=5.929;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.221;QD=15.07;ReadPosRankSum=1.695;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1480,162,0 chrVII 554862 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=15.46;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1610,177,0 chrVII 555174 . C G 660 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=35.7608;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=16.92;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:78:693,78,0 chrVII 555941 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.78;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1189,135,0 chrVII 556045 . G A 552 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.81;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:585,63,0 chrVII 556096 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.87;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:993,111,0 chrVII 556822 . C G 893 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:926,105,0 chrVII 556902 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1028,111,0 chrVII 557021 . A T 2041 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.73;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2074,225,0 chrVII 557969 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.16;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1197,132,0 chrVII 557987 . A C 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.213;QD=18.28;ReadPosRankSum=1.675;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1130,129,0 chrVII 558275 . A G 1034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.928;QD=18.46;ReadPosRankSum=1.609;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1067,120,0 chrVII 558446 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1357,156,0 chrVII 558915 . G C 1572 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.96;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1605,180,0 chrVII 559210 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.61;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:852,90,0 chrVII 559229 . A G 601 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=15.02;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:634,72,0 chrVII 559261 . A G 633 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=12.17;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:666,75,0 chrVII 559267 . G C 640 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=12.31;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:75:673,75,0 chrVII 559278 . T A 664 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=12.77;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:697,75,0 chrVII 560371 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.56;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2038,216,0 chrVII 560495 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.87;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1598,174,0 chrVII 561585 . A C 1734 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.89;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1767,204,0 chrVII 561745 . A C 662 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:695,78,0 chrVII 561747 . G T 692 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=16.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:78:725,78,0 chrVII 561780 . A G 989 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1022,117,0 chrVII 568130 . G C 360 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.00;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:393,45,0 chrVII 568421 . G T 807 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=23.74;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:840,90,0 chrVII 568544 . G A 584 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=17.70;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:617,66,0 chrVII 575122 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.010;QD=19.21;ReadPosRankSum=1.636;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,71:77:99:1512,171,0 chrVII 575640 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1673,192,0 chrVII 575955 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1500,162,0 chrVII 576318 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.37;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1319,147,0 chrVII 576519 . T C 2929 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.19;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2962,336,0 chrVII 576905 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.34;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1538,168,0 chrVII 577158 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1355,147,0 chrVII 577383 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.60;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2440,267,0 chrVII 577533 . A C 1906 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.45;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1939,219,0 chrVII 577756 . A G 3468.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.6887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.570;QD=22.67;ReadPosRankSum=1.709;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:1,148:153:99:3468,393,0 chrVII 577801 . A G 2510 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.09;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2543,291,0 chrVII 577826 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.15;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1910,216,0 chrVII 577881 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.31;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1553,174,0 chrVII 578083 . T A 1447 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.55;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1480,162,0 chrVII 578218 . T A 889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=4.228;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.116;QD=19.33;ReadPosRankSum=1.655;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:922,99,0 chrVII 578265 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.53;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1068,114,0 chrVII 578356 . G A 844 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.58;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:877,93,0 chrVII 578364 . G A 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.659;QD=17.11;ReadPosRankSum=0.479;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:90:837,90,0 chrVII 578445 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.26;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1324,144,0 chrVII 578512 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.44;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1510,165,0 chrVII 578702 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.493;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.638;QD=21.32;ReadPosRankSum=1.687;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1653,186,0 chrVII 578731 . T C 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=2.845;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.437;QD=21.31;ReadPosRankSum=2.395;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1951,219,0 chrVII 578860 . T C 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.519;QD=20.68;ReadPosRankSum=1.626;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1377,156,0 chrVII 578924 . A G 2250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.933;QD=21.63;ReadPosRankSum=1.699;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2283,258,0 chrVII 579120 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.10;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1779,204,0 chrVII 579186 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=3.004;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.118;QD=20.23;ReadPosRankSum=2.382;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1510,171,0 chrVII 579190 . A C 1484 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.90;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1517,168,0 chrVII 579227 . G C 2400 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.82;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2433,276,0 chrVII 579376 . G A 2995 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.58;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3028,321,0 chrVII 579473 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=80;Dels=0.01;FS=3.183;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-1.057;QD=14.70;ReadPosRankSum=1.687;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1209,135,0 chrVII 579474 . G C 1114 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=14.10;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1147,129,0 chrVII 579508 . A G 1696 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.04;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1729,195,0 chrVII 579634 . A G 2527 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.42;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2560,285,0 chrVII 579733 . T C 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=113;Dels=0.00;FS=3.050;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.874;QD=19.25;ReadPosRankSum=1.700;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,108:113:99:2208,252,0 chrVII 579775 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;MQRankSum=0.308;QD=16.68;ReadPosRankSum=1.694;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1534,180,0 chrVII 579785 . T A 1529 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=16.62;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1562,174,0 chrVII 579802 . G T 1322 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=15.20;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1355,150,0 chrVII 579827 . T C 1564 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=17.19;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1597,183,0 chrVII 579915 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.04;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2137,234,0 chrVII 580060 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1626,177,0 chrVII 580155 . A G 1058 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=20.35;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1091,120,0 chrVII 580178 . G T 945 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.69;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:978,102,0 chrVII 580283 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.06;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1227,135,0 chrVII 580425 . C G 556 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.17;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:66:589,66,0 chrVII 580608 . A G 1457 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.6263;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.13;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1490,165,0 chrVII 580723 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1433,159,0 chrVII 580852 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.82;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1822,207,0 chrVII 580867 . T C 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.199;QD=19.14;ReadPosRankSum=1.688;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1545,177,0 chrVII 581206 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.31;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1487,168,0 chrVII 581386 . T G 1249 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.22;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1282,144,0 chrVII 581718 . G A 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.5288;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.588;QD=19.80;ReadPosRankSum=1.011;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1003,105,0 chrVII 581814 . A G 846 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.27;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:879,99,0 chrVII 581949 . A G 1293 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=18.21;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1326,153,0 chrVII 582077 . A G 982 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=8.8184;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;QD=22.84;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1015,114,0 chrVII 582233 . T C 490 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.27;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:523,60,0 chrVII 582267 . A C 314 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:347,39,0 chrVII 582566 . T A 247 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=9.15;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:280,30,0 chrVII 582800 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1094,123,0 chrVII 583266 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.29;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2039,228,0 chrVII 583389 . A T 2092 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.55;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2125,240,0 chrVII 583638 . C A 2317 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.82;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2350,252,0 chrVII 583647 . A G 1833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=3.158;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.693;QD=15.27;ReadPosRankSum=1.674;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1866,213,0 chrVII 583830 . T C 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=79;Dels=0.00;FS=4.494;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.593;QD=17.78;ReadPosRankSum=1.687;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1438,162,0 chrVII 583953 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.99;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1912,204,0 chrVII 584220 . C T 769 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.03;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:802,84,0 chrVII 584298 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.15;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1081,120,0 chrVII 584388 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.88;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1543,171,0 chrVII 584567 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.78;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1436,153,0 chrVII 584635 . A T 1114 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.88;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1147,129,0 chrVII 584636 . T A 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.732;QD=17.95;ReadPosRankSum=1.674;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1092,126,0 chrVII 584683 . C G 1122 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=17.81;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1155,132,0 chrVII 584916 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.29;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1372,156,0 chrVII 585062 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.55;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1284,144,0 chrVII 585274 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=4.181;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.669;QD=19.49;ReadPosRankSum=1.669;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1105,123,0 chrVII 585476 . A G 1031 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.47;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1064,120,0 chrVII 585503 . T C 946 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.31;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:979,114,0 chrVII 585680 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.05;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1488,168,0 chrVII 586087 . A G 665 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.62;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:698,81,0 chrVII 586096 . T C 623 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=15.97;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:75:656,75,0 chrVII 586267 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=19.72;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1354,147,0 chrVII 586878 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.92;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:941,105,0 chrVII 587130 . A G 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=54;Dels=0.00;FS=11.181;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.630;QD=22.94;ReadPosRankSum=2.357;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:1272,144,0 chrVII 587334 . C A 1240 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.96;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1273,135,0 chrVII 587567 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.144;QD=20.64;ReadPosRankSum=1.684;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1519,171,0 chrVII 587646 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=69;Dels=0.00;FS=9.824;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.427;QD=20.16;ReadPosRankSum=2.898;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1424,162,0 chrVII 587709 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.26;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1324,144,0 chrVII 587750 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1665,180,0 chrVII 587941 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.41;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1450,156,0 chrVII 587958 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.32;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1279,138,0 chrVII 588024 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.26;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1391,150,0 chrVII 588195 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1948,222,0 chrVII 588489 . T C 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.894;QD=22.63;ReadPosRankSum=1.676;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1436,159,0 chrVII 589047 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.49;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2053,216,0 chrVII 589637 . A G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.082;QD=21.23;ReadPosRankSum=1.677;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1392,156,0 chrVII 589799 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.83;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1533,174,0 chrVII 589840 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.23;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1456,165,0 chrVII 590065 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.53;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1971,225,0 chrVII 590527 . C G 1524 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.77;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1557,171,0 chrVII 590641 . G A 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9978;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.548;QD=24.11;ReadPosRankSum=-0.479;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2299,234,0 chrVII 590923 . T G 2071 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.01;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2104,240,0 chrVII 590933 . C A 2264 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.69;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2297,243,0 chrVII 590968 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.30;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2252,249,0 chrVII 591397 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.14;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1725,195,0 chrVII 591688 . A G 2264 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.86;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2297,258,0 chrVII 591689 . C G 2112 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.38;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2145,240,0 chrVII 592001 . T G 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.638;QD=20.88;ReadPosRankSum=0.983;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2351,267,0 chrVII 592119 . G C 1446 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.54;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1479,165,0 chrVII 592123 . A T 1372 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5261;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.15;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1405,153,0 chrVII 592271 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.33;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1641,174,0 chrVII 592301 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.50;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1217,138,0 chrVII 592302 . A C 1194 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.66;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1227,138,0 chrVII 592630 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.40;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1685,198,0 chrVII 592665 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.64;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1461,162,0 chrVII 592944 . T A 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.121;QD=16.28;ReadPosRankSum=1.652;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1433,165,0 chrVII 592945 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=16.89;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1469,165,0 chrVII 593220 . G A 920 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.69;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:953,105,0 chrVII 593448 . G A 2316 filter AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=4;QD=20.68;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2349,249,0 chrVII 593486 . T A 2408 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.32;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2441,261,0 chrVII 593663 . C A 2374 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.74;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2407,258,0 chrVII 593805 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.84;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1909,207,0 chrVII 594021 . G C 1937 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.1159;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.97;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1970,222,0 chrVII 594420 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.20;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2209,240,0 chrVII 594546 . T C 1094 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.26;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1127,126,0 chrVII 594654 . G C 1424 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.34;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1457,165,0 chrVII 594687 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.075;QD=21.32;ReadPosRankSum=1.130;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1504,152,0 chrVII 594770 . T A 1718 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.21;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1751,192,0 chrVII 594794 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1869,213,0 chrVII 594854 . T C 1595 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.94;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1628,183,0 chrVII 594882 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2144;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.21;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1878,216,0 chrVII 594909 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.95;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2489,264,0 chrVII 595660 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.15;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1799,195,0 chrVII 595667 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.51;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1625,180,0 chrVII 595888 . T C 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.216;QD=22.73;ReadPosRankSum=1.658;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2238,249,0 chrVII 595912 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.11;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1657,177,0 chrVII 595917 . G C 1640 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.29;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1673,186,0 chrVII 596110 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3030;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.08;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1109,126,0 chrVII 596127 . T A 1021 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=17.91;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1054,114,0 chrVII 596214 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.64;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1937,210,0 chrVII 596396 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.7495;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.46;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1325,153,0 chrVII 596464 . T C 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.942;QD=19.10;ReadPosRankSum=1.672;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1141,129,0 chrVII 596503 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=14.89;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1090,114,0 chrVII 596510 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=14.38;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1155,126,0 chrVII 596542 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=14.07;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1187,135,0 chrVII 596544 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=13.76;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1189,135,0 chrVII 597022 . A G 1986 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.86;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2019,234,0 chrVII 597039 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.65;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1841,204,0 chrVII 597103 . A G 1932 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.55;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1965,222,0 chrVII 597126 . G C 2046 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.48;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2079,234,0 chrVII 597202 . T G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.048;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.775;QD=20.03;ReadPosRankSum=1.504;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1575,160,0 chrVII 597232 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.03;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1194,129,0 chrVII 597250 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7264;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.28;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1194,132,0 chrVII 597715 . T C 2074 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0813;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.74;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2107,234,0 chrVII 598477 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.36;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1582,177,0 chrVII 598538 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.16;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1492,159,0 chrVII 598680 . C T 665 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.47;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:75:698,75,0 chrVII 598733 . C T 1024 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.48;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1057,114,0 chrVII 598851 . A T 1632 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.36;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1665,177,0 chrVII 599047 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=14.5539;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.02;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:813,90,0 chrVII 599275 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.027;QD=16.50;ReadPosRankSum=1.677;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1089,123,0 chrVII 599515 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.33;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1596,174,0 chrVII 599725 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.12;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1211,129,0 chrVII 599815 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.56;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1564,177,0 chrVII 600058 . T C 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.884;QD=22.06;ReadPosRankSum=1.662;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1136,126,0 chrVII 600628 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=10.8064;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=18.54;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1294,147,0 chrVII 600706 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=20.10;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2204,243,0 chrVII 601612 . T A 1237 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1270,135,0 chrVII 601696 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=73;Dels=0.00;FS=6.849;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.497;QD=18.79;ReadPosRankSum=2.381;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1405,159,0 chrVII 601780 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.224;QD=24.04;ReadPosRankSum=1.686;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1836,207,0 chrVII 601918 . A G 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.556;QD=18.93;ReadPosRankSum=1.536;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1055,120,0 chrVII 602565 . C G 2094 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2127,240,0 chrVII 603238 . A T 1560 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.94;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1593,180,0 chrVII 603286 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.98;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1550,168,0 chrVII 603531 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.10;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1299,141,0 chrVII 603547 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.15;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1231,135,0 chrVII 603795 . C G 1073 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.63;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1106,123,0 chrVII 603829 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.05;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1380,147,0 chrVII 604033 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=10.078;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.062;QD=23.42;ReadPosRankSum=2.832;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:3,63:66:99:1579,171,0 chrVII 604120 . C A 1816 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.54;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1849,195,0 chrVII 604147 . A C 1374 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.51;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1407,156,0 chrVII 604381 . T A 1023 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1056,117,0 chrVII 604433 . T C 1927 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.08;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1960,222,0 chrVII 604695 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1257,135,0 chrVII 604881 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1925,207,0 chrVII 605190 . T A 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.944;DP=127;Dels=0.00;FS=15.556;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.819;QD=20.90;ReadPosRankSum=4.060;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:6,121:127:99:2687,288,0 chrVII 605286 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.69;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1551,180,0 chrVII 605491 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=15.18;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1688,186,0 chrVII 605496 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.35;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1799,195,0 chrVII 605573 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.39;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1909,213,0 chrVII 605648 . T C 759 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=15.18;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:90:792,90,0 chrVII 605710 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.33;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1558,168,0 chrVII 605796 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.16;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1197,132,0 chrVII 605832 . G T 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.78;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1180,126,0 chrVII 605833 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.05;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1176,126,0 chrVII 606799 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2362;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.82;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2171,234,0 chrVII 607146 . A G 2673 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.09;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2706,300,0 chrVII 607285 . A C 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.417;QD=17.51;ReadPosRankSum=2.377;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1241,135,0 chrVII 607298 . A G 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=68;Dels=0.00;FS=3.919;HaplotypeScore=6.1484;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.879;QD=16.31;ReadPosRankSum=2.113;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1142,126,0 chrVII 607457 . C T 2113 SnpCluster AC=2;AF=1.00;AN=2;DP=107;Dels=0.04;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.75;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2146,231,0 chrVII 607458 . C T 2142 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.03;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.60;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2175,231,0 chrVII 607461 . C T 2154 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.71;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2187,234,0 chrVII 607503 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.531;QD=18.68;ReadPosRankSum=1.682;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1322,150,0 chrVII 607773 . C A 1923 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.62;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1956,216,0 chrVII 608216 . A G 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.190;DP=62;Dels=0.00;FS=5.398;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.364;QD=20.94;ReadPosRankSum=3.220;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:4,57:62:99:1331,147,0 chrVII 608273 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,132,0 chrVII 608489 . C T 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.112;QD=20.87;ReadPosRankSum=1.229;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1369,150,0 chrVII 608495 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.25;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1246,141,0 chrVII 608522 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.13;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1005,108,0 chrVII 608589 . A C 964 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:997,114,0 chrVII 608636 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1177,126,0 chrVII 608762 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.36;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1601,180,0 chrVII 609250 . A C 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=5.528;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.733;QD=18.80;ReadPosRankSum=1.595;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:57:503,57,0 chrVII 609273 . A T 267 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=8.90;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:300,33,0 chrVII 609282 . T C 301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-0.182;QD=8.85;ReadPosRankSum=2.672;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:3,31:34:39:334,39,0 chrVII 609307 . G A 592 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.58;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:625,66,0 chrVII 609325 . A T 490 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=13.24;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:57:523,57,0 chrVII 609367 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.42;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:840,93,0 chrVII 609644 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=68;Dels=0.00;FS=6.213;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-2.894;QD=20.49;ReadPosRankSum=2.832;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,63:68:99:1426,162,0 chrVII 609711 . C G 1717 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.46;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1750,195,0 chrVII 609928 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.12;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2252,240,0 chrVII 610544 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.88;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1474,162,0 chrVII 610674 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.88;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1978,210,0 chrVII 611358 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9302;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.74;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1389,159,0 chrVII 611766 . C T 178.01 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=5.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:27:211,27,0 chrVII 612075 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.26;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1613,186,0 chrVII 612267 . A C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.851;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.802;QD=18.94;ReadPosRankSum=2.384;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2173,249,0 chrVII 612759 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.21;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1935,213,0 chrVII 613028 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.86;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1860,198,0 chrVII 613239 . A G 2551 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.18;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2584,291,0 chrVII 613257 . A G 2570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=4.907;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-1.279;QD=19.77;ReadPosRankSum=1.679;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2603,294,0 chrVII 613788 . G T 1881 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.39;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1914,210,0 chrVII 613896 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.72;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1985,216,0 chrVII 614208 . T C 2320 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.75;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2353,267,0 chrVII 614457 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.35;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1473,162,0 chrVII 614769 . A T 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.381;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.528;QD=21.05;ReadPosRankSum=1.691;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1822,198,0 chrVII 615525 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.41;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2260,240,0 chrVII 615540 . C T 2203 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.98;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2236,240,0 chrVII 615761 . C G 1843 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.94;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1876,207,0 chrVII 616021 . C A 1375 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.84;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1408,153,0 chrVII 616667 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.32;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1598,177,0 chrVII 617178 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.46;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1342,141,0 chrVII 617675 . T G 1626 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.27;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1659,189,0 chrVII 617867 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.23;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1901,201,0 chrVII 617973 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0602;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=16.35;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1930,216,0 chrVII 618008 . A G 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.133;DP=125;Dels=0.00;FS=9.239;HaplotypeScore=15.3302;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.730;QD=17.92;ReadPosRankSum=3.384;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:4,116:125:99:2273,258,0 chrVII 618124 . T C 2255 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.2165;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.32;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2288,258,0 chrVII 618236 . C A 2344 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.92;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2377,255,0 chrVII 618272 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.54;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2646,294,0 chrVII 618620 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=8.4898;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.643;QD=20.09;ReadPosRankSum=1.081;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2383,264,0 chrVII 618887 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2058,228,0 chrVII 619415 . A G 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=121;Dels=0.00;FS=2.524;HaplotypeScore=12.2704;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.758;QD=21.12;ReadPosRankSum=2.359;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:3,118:121:99:2589,277,0 chrVII 619736 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.49;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1642,186,0 chrVII 619787 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.51;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2217,237,0 chrVII 619798 . C G 2067 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.52;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2100,240,0 chrVII 619902 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.60;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2587,294,0 chrVII 620139 . A T 1249 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.52;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1282,138,0 chrVII 620150 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.62;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1425,162,0 chrVII 620222 . T A 2236 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.90;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2269,243,0 chrVII 620294 . A C 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=90;Dels=0.00;FS=2.931;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.439;QD=20.49;ReadPosRankSum=2.365;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:2,85:90:99:1877,213,0 chrVII 620376 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.40;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1873,207,0 chrVII 620379 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.53;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1849,198,0 chrVII 620578 . T C 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.678;QD=17.51;ReadPosRankSum=1.682;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1241,141,0 chrVII 620656 . G T 1550 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.79;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1583,171,0 chrVII 620815 . A G 2486 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.25;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2519,282,0 chrVII 620838 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.65;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2371,267,0 chrVII 620954 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0135;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.91;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1635,180,0 chrVII 621137 . A C 1945 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.45;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1978,222,0 chrVII 621311 . G A 2572 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.98;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2605,288,0 chrVII 621807 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4804;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.43;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2209,240,0 chrVII 621908 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9189;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.73;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2402,273,0 chrVII 622186 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.14;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1957,207,0 chrVII 622343 . T C 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=3.010;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.834;QD=20.41;ReadPosRankSum=1.700;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2299,258,0 chrVII 622465 . T C 2121 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2154,243,0 chrVII 622738 . C T 2524 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.34;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2557,282,0 chrVII 623101 . T C 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.496;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.325;QD=20.93;ReadPosRankSum=1.610;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1812,207,0 chrVII 623199 . G A 3103 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.82;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3136,339,0 chrVII 623404 . C A 1713 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.15;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1746,195,0 chrVII 623695 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.07;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2207,249,0 chrVII 623700 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.69;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2159,231,0 chrVII 624410 . T G 1457 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.17;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1490,171,0 chrVII 624442 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.179;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.421;QD=19.61;ReadPosRankSum=1.693;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1778,198,0 chrVII 624507 . T C 2050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.505;QD=20.50;ReadPosRankSum=2.277;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2083,240,0 chrVII 624532 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.44;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1918,210,0 chrVII 624869 . A T 2102 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.02;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2135,237,0 chrVII 625418 . A G 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.279;QD=14.51;ReadPosRankSum=1.650;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,83:87:99:1295,147,0 chrVII 625898 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.866;QD=21.21;ReadPosRankSum=1.684;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1560,180,0 chrVII 626170 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.06;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1125,123,0 chrVII 626202 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.58;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1263,147,0 chrVII 626335 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.10;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1716,186,0 chrVII 626350 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.17;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1664,186,0 chrVII 626389 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=17.79;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1616,177,0 chrVII 626794 . A T 1356 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.65;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1389,153,0 chrVII 626899 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=15.84;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:81:746,81,0 chrVII 627362 . A T 882 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.05;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:915,99,0 chrVII 627463 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.25;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:923,99,0 chrVII 627743 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.68;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1129,126,0 chrVII 627746 . T C 1033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-1.319;QD=15.42;ReadPosRankSum=1.577;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1066,120,0 chrVII 627883 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.47;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1085,126,0 chrVII 627896 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.77;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1187,132,0 chrVII 627924 . A C 997 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.81;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1030,117,0 chrVII 628012 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=25.08;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1688,180,0 chrVII 628050 . G T 1094 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.23;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1127,120,0 chrVII 628051 . T C 1035 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.54;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1068,123,0 chrVII 628090 . T A 1194 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=15.71;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1227,138,0 chrVII 628417 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.96;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1631,183,0 chrVII 628576 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.20;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1475,165,0 chrVII 628627 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=16.40;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1378,153,0 chrVII 628640 . A C 1536 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.34;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1569,177,0 chrVII 628754 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1499,168,0 chrVII 628958 . T A 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.403;QD=19.20;ReadPosRankSum=1.692;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1723,183,0 chrVII 629110 . A T 1341 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.73;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1374,147,0 chrVII 629203 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.09;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1319,144,0 chrVII 629731 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.32;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2645,282,0 chrVII 629962 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.99;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1481,156,0 chrVII 629998 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.19;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1870,207,0 chrVII 630340 . C G 1134 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.29;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1167,135,0 chrVII 630469 . A G 1280 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.32;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1313,147,0 chrVII 630516 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.17;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1452,162,0 chrVII 630535 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.18;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,156,0 chrVII 630553 . C A 1189 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.62;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1222,132,0 chrVII 630604 . T C 713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=37;Dels=0.00;FS=13.522;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=1.761;QD=19.27;ReadPosRankSum=1.001;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:2,34:37:84:746,84,0 chrVII 630680 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.85;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:807,87,0 chrVII 630686 . C A 670 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.18;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:703,75,0 chrVII 630710 . A G 738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-1.655;QD=16.40;ReadPosRankSum=1.655;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:87:771,87,0 chrVII 630721 . T C 603 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.36;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:72:636,72,0 chrVII 630817 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.08;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:93:872,93,0 chrVII 630914 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.05;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:909,102,0 chrVII 631257 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.76;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:988,111,0 chrVII 631282 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.65;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1272,135,0 chrVII 631474 . T C 790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=40;Dels=0.00;FS=2.669;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.770;QD=19.75;ReadPosRankSum=2.567;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:93:823,93,0 chrVII 631532 . A G 941 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.45;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:974,111,0 chrVII 631547 . A T 1267 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5626;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.63;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1300,144,0 chrVII 631584 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.09;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1778,195,0 chrVII 631979 . T C 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=5.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.364;QD=19.79;ReadPosRankSum=1.659;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:983,111,0 chrVII 632064 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.44;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1413,150,0 chrVII 632357 . C A 934 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.35;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:967,105,0 chrVII 632429 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.04;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1187,126,0 chrVII 632457 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.85;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:947,105,0 chrVII 633090 . C A 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1888,198,0 chrVII 633626 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.85;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1323,150,0 chrVII 633803 . T C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.880;QD=20.69;ReadPosRankSum=1.675;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1295,147,0 chrVII 633894 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.682;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.515;QD=17.34;ReadPosRankSum=1.685;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1316,147,0 chrVII 633895 . T G 1389 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.03;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1422,159,0 chrVII 634459 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.72;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2260,249,0 chrVII 634798 . T C 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.792;QD=17.47;ReadPosRankSum=1.534;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1256,144,0 chrVII 634898 . G T 1306 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.93;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1339,141,0 chrVII 635152 . A G 788 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:821,93,0 chrVII 635290 . G A 621 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:654,72,0 chrVII 635452 . T C 666 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:81:699,81,0 chrVII 635585 . T G 237 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:30:270,30,0 chrVII 635792 . T C 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.666;QD=21.63;ReadPosRankSum=1.666;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1158,129,0 chrVII 635804 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8075;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.04;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1162,126,0 chrVII 635861 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.71;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1140,126,0 chrVII 636162 . G A 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=87;Dels=0.00;FS=3.445;HaplotypeScore=8.2293;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.361;QD=20.98;ReadPosRankSum=0.289;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1858,207,0 chrVII 637449 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.14;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1564,174,0 chrVII 637458 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.35;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1421,159,0 chrVII 637533 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=14.2469;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.51;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1591,171,0 chrVII 637614 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=21.79;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1362,147,0 chrVII 637963 . T C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.206;QD=19.06;ReadPosRankSum=1.688;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1558,174,0 chrVII 638119 . G T 2021 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.50;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2054,219,0 chrVII 638253 . T C 2264 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.77;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2297,261,0 chrVII 638787 . T C 1595 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.69;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1628,183,0 chrVII 638835 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.77;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1425,159,0 chrVII 638846 . A T 1330 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.00;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1363,147,0 chrVII 638935 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.79;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2084,240,0 chrVII 639145 . G C 2286 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.86;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2319,264,0 chrVII 639331 . T C 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=3.026;HaplotypeScore=9.5658;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.666;QD=22.93;ReadPosRankSum=2.349;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2280,258,0 chrVII 639690 . A C 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DP=76;Dels=0.00;FS=10.014;HaplotypeScore=12.3764;MLEAC=1;MLEAF=0.500;MQ=55.01;MQ0=0;MQRankSum=1.057;QD=2.93;ReadPosRankSum=4.374;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:14,62:76:79:253,0,79 chrVII 640135 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.29;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:910,99,0 chrVII 640144 . G A 835 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=11.93;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:868,90,0 chrVII 640432 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.55;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1081,123,0 chrVII 640642 . A T 67.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=25;Dels=0.04;FS=17.297;HaplotypeScore=2.9188;MLEAC=1;MLEAF=0.500;MQ=53.01;MQ0=0;MQRankSum=1.126;QD=2.69;ReadPosRankSum=1.010;SB=1.23 GT:AD:DP:GQ:PL 0/1:12,12:24:10:97,0,10 chrVII 640786 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.139;QD=21.45;ReadPosRankSum=1.692;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1899,216,0 chrVII 641544 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=17.6005;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.15;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,119:123:99:2265,249,0 chrVII 641721 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.86;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2273,249,0 chrVII 642042 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.88;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1683,189,0 chrVII 642144 . C A 2111 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.32;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2144,237,0 chrVII 642162 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.39;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2022,213,0 chrVII 642168 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=18.84;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1766,198,0 chrVII 642227 . A C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.594;QD=17.00;ReadPosRankSum=1.640;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1308,147,0 chrVII 642373 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=106;Dels=0.00;FS=4.042;HaplotypeScore=12.2570;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.666;QD=18.63;ReadPosRankSum=1.699;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2008,222,0 chrVII 642480 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.11;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2250,255,0 chrVII 642561 . A G 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.280;QD=16.56;ReadPosRankSum=1.682;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1192,135,0 chrVII 642577 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=17.77;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1348,147,0 chrVII 642606 . A T 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=6.428;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.777;QD=18.36;ReadPosRankSum=2.290;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1447,156,0 chrVII 642723 . T C 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.093;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.866;QD=20.26;ReadPosRankSum=1.691;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1755,201,0 chrVII 642951 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.65;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1376,153,0 chrVII 643082 . G T 2400 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.76;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2433,261,0 chrVII 643237 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.25;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1635,177,0 chrVII 643427 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0562;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.93;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,133:135:99:2859,312,0 chrVII 643548 . G C 2762 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4127;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.77;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2795,315,0 chrVII 643560 . T C 2552 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.92;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2585,285,0 chrVII 643727 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.604;QD=16.61;ReadPosRankSum=1.705;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2209,246,0 chrVII 643743 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.817;QD=15.90;ReadPosRankSum=2.413;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2180,240,0 chrVII 644097 . A T 2419 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.26;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2452,267,0 chrVII 644400 . A G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.1351;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.892;QD=19.38;ReadPosRankSum=1.697;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1952,222,0 chrVII 644454 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.96;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1593,174,0 chrVII 645454 . T A 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.681;QD=22.01;ReadPosRankSum=1.654;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2014,216,0 chrVII 645493 . T G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.056;DP=94;Dels=0.00;FS=3.664;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.173;QD=21.12;ReadPosRankSum=1.248;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2018,231,0 chrVII 645955 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.14;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2228,249,0 chrVII 645958 . G T 2220 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.81;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2253,249,0 chrVII 646047 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.29;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1816,207,0 chrVII 646177 . T C 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.207;QD=18.92;ReadPosRankSum=1.662;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1906,216,0 chrVII 646899 . A G 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.115;QD=18.67;ReadPosRankSum=1.675;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1153,132,0 chrVII 647032 . C T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=92;Dels=0.01;FS=3.112;HaplotypeScore=6.6754;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=0.765;QD=15.12;ReadPosRankSum=1.128;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1424,159,0 chrVII 647038 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DP=85;Dels=0.00;FS=6.162;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-1.012;QD=16.29;ReadPosRankSum=2.274;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1418,162,0 chrVII 647545 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.75;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1692,183,0 chrVII 647725 . T G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.5072;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.674;QD=20.82;ReadPosRankSum=1.636;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1532,171,0 chrVII 647762 . G T 1211 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.53;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1244,135,0 chrVII 647897 . T A 2333 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2366,267,0 chrVII 648206 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.47;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2137,240,0 chrVII 648788 . T C 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=3.582;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=1;MQRankSum=1.258;QD=14.64;ReadPosRankSum=1.685;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1116,129,0 chrVII 648839 . A G 1291 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.71;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1324,150,0 chrVII 648936 . G A 1367 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=24.41;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1400,147,0 chrVII 648954 . T G 1117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;MQRankSum=-0.554;QD=22.34;ReadPosRankSum=1.663;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1150,126,0 chrVII 649033 . A C 1376 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.66;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1409,159,0 chrVII 649105 . G A 839 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=17.12;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:872,93,0 chrVII 649151 . T G 483 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;QD=10.73;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:516,57,0 chrVII 649172 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=11.06;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:60:553,60,0 chrVII 649387 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=9.5074;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.98;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1271,141,0 chrVII 649458 . A G 435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;DP=58;Dels=0.00;FS=15.546;HaplotypeScore=49.5369;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;MQRankSum=0.625;QD=7.50;ReadPosRankSum=1.447;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:31:468,31,0 chrVII 649473 . G A 595 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=54.5469;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=9.75;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:66:628,66,0 chrVII 649518 . G T 766 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=11.10;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:799,90,0 chrVII 649569 . G T 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.729;DP=73;Dels=0.00;FS=72.171;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.94;MQ0=0;MQRankSum=-0.234;QD=2.07;ReadPosRankSum=-4.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,30:73:99:181,0,333 chrVII 649661 . A G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=12.770;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.459;QD=23.79;ReadPosRankSum=2.319;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2269,258,0 chrVII 649865 . A G 2183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.526;DP=119;Dels=0.00;FS=13.238;HaplotypeScore=19.0076;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=1.319;QD=18.34;ReadPosRankSum=2.906;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:3,114:119:99:2216,252,0 chrVII 649985 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.59;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2380,255,0 chrVII 650278 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.48;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2371,267,0 chrVII 650728 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.49;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1473,159,0 chrVII 650923 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.55;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:579,63,0 chrVII 651243 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.17;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2208,240,0 chrVII 651425 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.31;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:814,93,0 chrVII 651434 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=14.04;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:90:791,90,0 chrVII 651866 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.9232;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.98;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2077,225,0 chrVII 652013 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=101;Dels=0.00;FS=3.018;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.858;QD=18.23;ReadPosRankSum=1.729;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1874,213,0 chrVII 652017 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.98;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1903,207,0 chrVII 652173 . T G 970 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.47;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1003,114,0 chrVII 652243 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.9023;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.65;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1565,168,0 chrVII 652295 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.30;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1790,201,0 chrVII 652337 . A G 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.061;DP=86;Dels=0.00;FS=8.347;HaplotypeScore=17.2151;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.156;QD=16.56;ReadPosRankSum=3.352;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:4,81:86:99:1457,165,0 chrVII 652400 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.14;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1893,204,0 chrVII 652445 . A T 1432 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.90;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1465,156,0 chrVII 652742 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.06;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1333,144,0 chrVII 652754 . T C 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=3.358;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.519;QD=15.70;ReadPosRankSum=1.679;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1085,123,0 chrVII 652970 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9324;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.524;QD=19.58;ReadPosRankSum=1.697;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1991,228,0 chrVII 653026 . T A 2068 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.68;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2101,234,0 chrVII 653036 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=85;Dels=0.00;FS=5.544;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.965;QD=19.34;ReadPosRankSum=2.917;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1677,192,0 chrVII 653044 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.04;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1737,189,0 chrVII 653088 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.24;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1126,123,0 chrVII 653157 . T G 1158 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.98;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1191,135,0 chrVII 653224 . T A 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.137;DP=51;Dels=0.00;FS=3.332;HaplotypeScore=17.9313;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=1.390;QD=10.04;ReadPosRankSum=-0.177;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:4,47:51:63:545,63,0 chrVII 653248 . A C 341 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=8.52;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,34:40:42:374,42,0 chrVII 653367 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.73;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1619,189,0 chrVII 653483 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.77;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1622,180,0 chrVII 653526 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=5.209;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.400;QD=21.97;ReadPosRankSum=1.685;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1637,186,0 chrVII 653694 . C G 1182 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=15.76;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1215,138,0 chrVII 653750 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=17.42;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1409,153,0 chrVII 653764 . A T 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-0.371;QD=16.01;ReadPosRankSum=1.691;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1378,150,0 chrVII 653791 . C T 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7411;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=18.36;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1961,213,0 chrVII 653798 . A G 1376 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=101;Dels=0.00;FS=6.947;HaplotypeScore=8.5073;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=1.990;QD=13.62;ReadPosRankSum=3.628;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:6,95:101:99:1409,159,0 chrVII 653801 . G A 1485 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=96;Dels=0.03;FS=2.646;HaplotypeScore=6.5337;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=1.390;QD=15.47;ReadPosRankSum=2.185;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1518,159,0 chrVII 653930 . T C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.564;QD=22.48;ReadPosRankSum=1.615;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2034,231,0 chrVII 654094 . T G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.760;QD=20.85;ReadPosRankSum=1.690;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1784,198,0 chrVII 654308 . A T 2171 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.29;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2204,234,0 chrVII 654320 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.37;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,97:104:99:1735,198,0 chrVII 654338 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=15.72;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1762,192,0 chrVII 654500 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2849;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.963;QD=17.77;ReadPosRankSum=1.096;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1686,189,0 chrVII 654544 . T C 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5051;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.963;QD=18.10;ReadPosRankSum=2.206;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:1879,210,0 chrVII 654825 . T C 1600 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.28;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1633,186,0 chrVII 654840 . T A 1505 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.29;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1538,168,0 chrVII 654873 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=15.95;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1213,132,0 chrVII 654914 . A T 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.311;QD=16.58;ReadPosRankSum=1.688;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1326,144,0 chrVII 654930 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.866;QD=17.51;ReadPosRankSum=1.689;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1434,162,0 chrVII 655257 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.30;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1460,165,0 chrVII 655266 . C A 1411 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.06;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1444,153,0 chrVII 655268 . T A 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.381;QD=19.80;ReadPosRankSum=1.682;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1399,156,0 chrVII 655347 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.71;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1137,129,0 chrVII 655397 . C A 1275 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.24;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1308,138,0 chrVII 655437 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.34;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1579,180,0 chrVII 655509 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.96;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2352,255,0 chrVII 655650 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=2.797;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.344;QD=21.09;ReadPosRankSum=2.349;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2121,237,0 chrVII 655680 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.15;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1726,183,0 chrVII 655695 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.95;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1487,165,0 chrVII 655734 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.34;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1612,174,0 chrVII 655794 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3228;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.01;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2071,225,0 chrVII 655881 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1761,198,0 chrVII 655924 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2107,228,0 chrVII 655962 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.57;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2602,282,0 chrVII 656197 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=2.903;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.551;QD=20.11;ReadPosRankSum=2.336;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1340,150,0 chrVII 656248 . T G 1444 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.24;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1477,162,0 chrVII 656510 . A T 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=3.563;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.272;QD=23.74;ReadPosRankSum=0.708;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1647,183,0 chrVII 656566 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.58;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1149,126,0 chrVII 656576 . A T 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=3.027;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-2.146;QD=18.31;ReadPosRankSum=2.336;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1223,129,0 chrVII 656811 . T A 1854 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.07;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1887,201,0 chrVII 656877 . A G 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.516;QD=15.94;ReadPosRankSum=1.678;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1053,117,0 chrVII 657040 . C G 1058 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1091,123,0 chrVII 657221 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1122;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.80;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1208,132,0 chrVII 657389 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1211,129,0 chrVII 657546 . T C 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.728;QD=19.91;ReadPosRankSum=1.682;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1407,162,0 chrVII 657565 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.69;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1554,171,0 chrVII 657604 . G T 2285 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.40;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2318,249,0 chrVII 657754 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.23;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2241,246,0 chrVII 657835 . T C 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.458;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.204;QD=20.00;ReadPosRankSum=1.664;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2073,231,0 chrVII 657886 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.9855;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.36;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2027,228,0 chrVII 658022 . G A 2676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.2675;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.705;QD=20.74;ReadPosRankSum=1.437;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2709,294,0 chrVII 658195 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7160;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=10.80;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:908,99,0 chrVII 658639 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.89;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1266,135,0 chrVII 658666 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.8007;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.51;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1448,165,0 chrVII 658876 . T A 1435 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.08;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1468,159,0 chrVII 658987 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.01;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1414,162,0 chrVII 659167 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.40;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1937,219,0 chrVII 659189 . T A 1576 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.47;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1609,174,0 chrVII 659272 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.99;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1808,192,0 chrVII 659437 . T C 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.642;QD=22.37;ReadPosRankSum=1.693;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2046,231,0 chrVII 659791 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.00;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2093,240,0 chrVII 659935 . T A 2903 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.86;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2936,330,0 chrVII 659973 . G T 3062 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.31;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3095,327,0 chrVII 660023 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.48;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1979,210,0 chrVII 660028 . G T 1898 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.98;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1931,210,0 chrVII 660108 . A C 2516 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.74;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2549,288,0 chrVII 660217 . A C 2421 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.52;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2454,276,0 chrVII 660221 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.93;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2362,273,0 chrVII 660351 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.01;FS=0.000;HaplotypeScore=7.6814;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=23.86;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3364,360,0 chrVII 660461 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=14.59;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1667,177,0 chrVII 660464 . G C 1664 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.85;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1697,195,0 chrVII 660641 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.87;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2203,252,0 chrVII 660643 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.27;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2384,255,0 chrVII 660685 . T C 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=124;Dels=0.00;FS=4.107;HaplotypeScore=10.6165;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=-0.014;QD=14.58;ReadPosRankSum=1.703;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,120:124:99:1841,210,0 chrVII 660704 . C G 1767 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=15.37;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1800,201,0 chrVII 660728 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=9.839;HaplotypeScore=5.0347;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=0.850;QD=18.96;ReadPosRankSum=2.931;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1948,219,0 chrVII 660930 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.04;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1396,156,0 chrVII 661080 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=16.61;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1129,120,0 chrVII 661126 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.93;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1252,138,0 chrVII 661173 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.44;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1158,123,0 chrVII 661290 . A T 49.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=2.38;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:9:82,9,0 chrVII 661343 . A G 692 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.3540;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=23.07;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:725,84,0 chrVII 661442 . C G 517 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.88;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:550,63,0 chrVII 661475 . G A 449 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=15.48;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:482,54,0 chrVII 661498 . A G 432 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=16.62;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:465,54,0 chrVII 661528 . T A 459 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=22.95;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:54:492,54,0 chrVII 661617 . T C 931 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.17;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:964,111,0 chrVII 661628 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.98;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1082,117,0 chrVII 661642 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.96;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1207,129,0 chrVII 661713 . C G 1290 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.25;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1323,150,0 chrVII 661735 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.27;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1373,150,0 chrVII 661885 . T C 546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.168;QD=17.61;ReadPosRankSum=1.621;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:66:579,66,0 chrVII 661892 . T A 521 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.37;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:554,60,0 chrVII 662069 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.98;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1374,150,0 chrVII 662230 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.80;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:831,87,0 chrVII 662566 . A G 805 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.72;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:838,93,0 chrVII 663196 . T C 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.804;QD=23.30;ReadPosRankSum=1.670;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1338,147,0 chrVII 663278 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1403,156,0 chrVII 663380 . A T 951 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.68;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:984,105,0 chrVII 664238 . A G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.678;QD=22.08;ReadPosRankSum=1.624;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1446,145,0 chrVII 664343 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.32;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1350,147,0 chrVII 664700 . C G 1568 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1601,180,0 chrVII 664982 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.62;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1909,216,0 chrVII 664995 . G A 1911 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.33;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1944,207,0 chrVII 665432 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.97;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2008,216,0 chrVII 665747 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.22;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1917,207,0 chrVII 665893 . A G 714 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=14.28;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:747,84,0 chrVII 665906 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=16.88;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:911,102,0 chrVII 666261 . T A 781 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.67;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:87:814,87,0 chrVII 666285 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.85;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:742,81,0 chrVII 666448 . T C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.602;QD=23.09;ReadPosRankSum=1.667;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1257,141,0 chrVII 666496 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.77;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1361,153,0 chrVII 666547 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.60;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1221,132,0 chrVII 666548 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.65;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1169,132,0 chrVII 666667 . A C 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.86;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,156,0 chrVII 666815 . T G 1790 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.11;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1823,210,0 chrVII 666829 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.90;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1642,186,0 chrVII 667120 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.97;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1790,195,0 chrVII 667659 . T C 581 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=13.83;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:614,69,0 chrVII 667672 . G A 536 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=13.07;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:60:569,60,0 chrVII 667714 . C T 339 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=9.42;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:39:372,39,0 chrVII 667820 . G A 735 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:84:768,84,0 chrVII 667843 . G A 584 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.47;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:66:617,66,0 chrVII 668528 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.44;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1452,162,0 chrVII 668593 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.68;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2117,228,0 chrVII 668797 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.74;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1101,126,0 chrVII 668812 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.81;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1048,114,0 chrVII 669817 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=16.78;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:889,102,0 chrVII 669871 . A G 983 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.11;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1016,114,0 chrVII 669892 . T C 960 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=16.55;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:993,111,0 chrVII 669985 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=14.08;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1033,123,0 chrVII 670056 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.02;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1178,126,0 chrVII 670080 . G C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.928;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.176;QD=20.75;ReadPosRankSum=-1.609;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1195,115,0 chrVII 670175 . A G 457 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:54:490,54,0 chrVII 670257 . G A 447 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=14.90;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:480,54,0 chrVII 670263 . A G 533 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=16.15;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:566,63,0 chrVII 670287 . A G 390 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=13.00;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:423,48,0 chrVII 670291 . G A 352 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=10.67;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:385,42,0 chrVII 670307 . A G 503 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=13.59;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:536,60,0 chrVII 670374 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.57;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:929,102,0 chrVII 670474 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.23;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1241,141,0 chrVII 670910 . C A 1802 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.10;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1835,198,0 chrVII 671206 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.34;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1548,174,0 chrVII 671227 . T C 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.324;QD=20.05;ReadPosRankSum=2.389;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1657,186,0 chrVII 671239 . A T 1826 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.43;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1859,198,0 chrVII 671341 . A G 1881 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.01;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1914,213,0 chrVII 671378 . T C 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=3.199;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.216;QD=20.14;ReadPosRankSum=1.695;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1966,216,0 chrVII 671404 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.74;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1990,222,0 chrVII 671440 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.52;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1647,189,0 chrVII 671710 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.1783;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.57;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1349,144,0 chrVII 671982 . T G 812 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.56;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:845,93,0 chrVII 672011 . C A 675 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.28;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:708,75,0 chrVII 672392 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.46;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1138,120,0 chrVII 672632 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2202,237,0 chrVII 672695 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1856,195,0 chrVII 673127 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=86;Dels=0.00;FS=2.846;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.304;QD=19.95;ReadPosRankSum=2.392;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1749,198,0 chrVII 673193 . C G 2209 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.54;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2242,252,0 chrVII 673220 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.22;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2169,234,0 chrVII 673619 . G A 2853 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.95;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2886,306,0 chrVII 673804 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.07;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2014,216,0 chrVII 673934 . T C 1789 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.83;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1822,207,0 chrVII 674123 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.62;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2239,240,0 chrVII 674153 . C A 1662 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.27;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1695,186,0 chrVII 674388 . T C 2517 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2550,285,0 chrVII 674753 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2209,243,0 chrVII 674888 . T C 1981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5820;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.167;QD=20.01;ReadPosRankSum=1.626;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2014,228,0 chrVII 675230 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.20;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1703,186,0 chrVII 675399 . A G 312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-0.538;QD=10.76;ReadPosRankSum=1.614;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:39:345,39,0 chrVII 675404 . G A 327 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=10.22;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:39:360,39,0 chrVII 675419 . T C 500 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=13.51;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:60:533,60,0 chrVII 675578 . T C 647 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.31;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:78:680,78,0 chrVII 675599 . C T 746 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.31;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:87:779,87,0 chrVII 675606 . C T 775 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.39;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:808,90,0 chrVII 675625 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:84:743,84,0 chrVII 675850 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.69;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2141,228,0 chrVII 676383 . T C 636 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=11.56;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:669,78,0 chrVII 676417 . A T 1168 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.47;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1201,129,0 chrVII 676485 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9678;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.69;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1608,180,0 chrVII 676517 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1790,192,0 chrVII 676647 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.44;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1744,195,0 chrVII 676840 . T G 1399 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.17;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1432,159,0 chrVII 676875 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.71;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1511,165,0 chrVII 677220 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.49;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1816,207,0 chrVII 677274 . T C 1790 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.89;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1823,207,0 chrVII 677364 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=13.85;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1044,117,0 chrVII 678099 . C T 92.26 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=14.0994;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=5.43;SB=-1.362e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:15:125,15,0 chrVII 678429 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.05;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1665,180,0 chrVII 678750 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.34;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1819,204,0 chrVII 678760 . C A 1916 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.55;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1949,207,0 chrVII 678853 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.64;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1947,222,0 chrVII 678864 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.18;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2124,240,0 chrVII 679312 . G A 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.77;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1103,120,0 chrVII 679471 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=16.40;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1148,129,0 chrVII 679705 . T C 840 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.54;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:873,99,0 chrVII 679731 . C A 843 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.60;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:876,96,0 chrVII 679768 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.64;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1065,123,0 chrVII 679849 . C A 1324 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.44;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1357,147,0 chrVII 680113 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.53;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1648,177,0 chrVII 680542 . T C 2184 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.62;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2217,252,0 chrVII 680773 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.823;QD=22.92;ReadPosRankSum=1.689;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1867,210,0 chrVII 681013 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.84;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2180,237,0 chrVII 681411 . T C 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=79;Dels=0.00;FS=5.462;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.962;QD=18.00;ReadPosRankSum=2.834;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1455,162,0 chrVII 681415 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.67;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1500,162,0 chrVII 681502 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.51;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1453,165,0 chrVII 681622 . T A 2155 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.77;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2188,246,0 chrVII 681706 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.21;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1872,204,0 chrVII 681775 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=17.80;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1760,189,0 chrVII 682027 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.12;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2286,249,0 chrVII 682208 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=16.27;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1058,117,0 chrVII 682257 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.35;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1376,147,0 chrVII 682309 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.90;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1507,165,0 chrVII 682324 . G T 1478 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.95;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1511,162,0 chrVII 682325 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.50;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1398,156,0 chrVII 682394 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.50;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1328,147,0 chrVII 682488 . A T 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.335;QD=22.72;ReadPosRankSum=1.675;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1419,156,0 chrVII 682525 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1467,156,0 chrVII 682848 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.89;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1326,150,0 chrVII 683391 . A T 1517 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.78;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1550,165,0 chrVII 683478 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.12;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1258,132,0 chrVII 683669 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1234,138,0 chrVII 684022 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.315;QD=18.64;ReadPosRankSum=1.680;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1263,144,0 chrVII 684041 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.37;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1636,171,0 chrVII 684165 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=74;Dels=0.00;FS=4.199;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.488;QD=20.03;ReadPosRankSum=1.635;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1515,171,0 chrVII 684623 . G T 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.1522;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.73;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2006,219,0 chrVII 684644 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.96;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1678,183,0 chrVII 684645 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=16.98;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1714,183,0 chrVII 684687 . C T 1982 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.02;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2015,219,0 chrVII 685328 . T A 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=68;Dels=0.00;FS=3.069;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.045;QD=18.84;ReadPosRankSum=2.374;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1314,141,0 chrVII 685491 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1726,186,0 chrVII 685720 . G T 1701 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.81;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1734,186,0 chrVII 685949 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1568,168,0 chrVII 686099 . A T 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.094;QD=22.01;ReadPosRankSum=1.687;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1728,186,0 chrVII 686208 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1585,171,0 chrVII 686356 . C A 1605 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1638,177,0 chrVII 686708 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1458,162,0 chrVII 686859 . T C 687 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.47;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:720,81,0 chrVII 687063 . A T 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.894;QD=21.76;ReadPosRankSum=1.676;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1382,150,0 chrVII 687222 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.37;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1757,201,0 chrVII 687223 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.71;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1787,201,0 chrVII 687607 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=101;Dels=0.00;FS=8.389;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.012;QD=19.35;ReadPosRankSum=2.350;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:1987,225,0 chrVII 687814 . A G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=3.403;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.647;QD=21.63;ReadPosRankSum=1.476;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1807,207,0 chrVII 687855 . G T 1300 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.84;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1333,147,0 chrVII 688271 . C A 1188 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.6815;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.22;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1221,135,0 chrVII 688371 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.35;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1128,120,0 chrVII 688494 . T C 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=3.641;HaplotypeScore=7.5289;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.609;QD=19.00;ReadPosRankSum=0.655;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1477,165,0 chrVII 688726 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2082,228,0 chrVII 688765 . T C 1639 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.45;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1672,189,0 chrVII 689170 . G T 1869 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1902,210,0 chrVII 689389 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.60;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2299,249,0 chrVII 689420 . A G 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=3.732;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.889;QD=22.73;ReadPosRankSum=1.701;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2556,282,0 chrVII 689454 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.29;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1859,216,0 chrVII 689554 . T A 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7289;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.405;QD=19.38;ReadPosRankSum=1.667;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2126,243,0 chrVII 689803 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.52;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2044,225,0 chrVII 689948 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.56;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1684,189,0 chrVII 690035 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.03;FS=0.000;HaplotypeScore=19.2585;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.44;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1763,189,0 chrVII 690039 . G C 1768 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=20.0103;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.01;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1801,204,0 chrVII 690131 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.31;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1113,117,0 chrVII 690262 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.59;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1385,153,0 chrVII 690379 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.47;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1643,183,0 chrVII 690505 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.57;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1082,123,0 chrVII 690685 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.29;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1950,207,0 chrVII 690847 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.97;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2538,270,0 chrVII 690893 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.63;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2002,213,0 chrVII 691114 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5540;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.63;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2406,258,0 chrVII 691141 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.68;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1925,222,0 chrVII 691370 . C A 1644 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.81;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1677,180,0 chrVII 691567 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2001,228,0 chrVII 691606 . C G 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.79;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1776,204,0 chrVII 692182 . T C 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.034;DP=83;Dels=0.00;FS=3.058;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.945;QD=15.51;ReadPosRankSum=2.361;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1320,150,0 chrVII 692206 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.55;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1886,201,0 chrVII 692371 . T C 1505 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.20;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1538,174,0 chrVII 692729 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.28;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2154,243,0 chrVII 692857 . T C 609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.970;QD=12.18;ReadPosRankSum=1.663;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:72:642,72,0 chrVII 692867 . A G 547 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=11.64;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:66:580,66,0 chrVII 693366 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.37;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1209,135,0 chrVII 693386 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.22;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1055,117,0 chrVII 693678 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.98;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2156,228,0 chrVII 693950 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.73;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1988,210,0 chrVII 694504 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.646;QD=22.10;ReadPosRankSum=1.703;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2685,303,0 chrVII 694533 . C G 2070 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.35;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2103,237,0 chrVII 694539 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.00;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2193,237,0 chrVII 694685 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.72;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1098,117,0 chrVII 694726 . T G 955 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.10;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:988,114,0 chrVII 694954 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.86;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1748,192,0 chrVII 695091 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.76;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1672,177,0 chrVII 695230 . T A 1687 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.76;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1720,183,0 chrVII 695464 . T A 1309 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.54;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1342,150,0 chrVII 696230 . C T 2805 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.82;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2838,309,0 chrVII 696322 . G A 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.226;QD=21.72;ReadPosRankSum=1.431;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2031,219,0 chrVII 696994 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.35;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1966,225,0 chrVII 697514 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5429;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.77;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1298,147,0 chrVII 697547 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.34;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1537,165,0 chrVII 697548 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.84;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1578,168,0 chrVII 697829 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.36;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1738,195,0 chrVII 697892 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.86;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1957,213,0 chrVII 698252 . A G 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.020;QD=21.26;ReadPosRankSum=1.685;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1585,177,0 chrVII 698376 . T C 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.285;DP=63;Dels=0.00;FS=5.883;HaplotypeScore=6.8585;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.621;QD=16.25;ReadPosRankSum=0.671;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1057,117,0 chrVII 698504 . A G 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=97;Dels=0.00;FS=15.464;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.084;QD=16.32;ReadPosRankSum=2.864;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1616,180,0 chrVII 698507 . T A 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.223;QD=17.44;ReadPosRankSum=2.345;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1672,180,0 chrVII 698531 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.82;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1797,204,0 chrVII 699971 . C G 853 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.80;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:886,99,0 chrVII 700193 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.17;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1000,111,0 chrVII 700617 . G A 921 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.42;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:954,105,0 chrVII 700638 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=16.33;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:735,84,0 chrVII 700641 . C A 737 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=17.98;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:770,81,0 chrVII 700775 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.76;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1237,132,0 chrVII 701233 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.63;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1617,177,0 chrVII 701419 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1499,171,0 chrVII 701578 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.26;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2635,282,0 chrVII 701596 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.84;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1997,210,0 chrVII 701914 . T A 2357 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.86;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2390,258,0 chrVII 702018 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.03;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1641,177,0 chrVII 702078 . C G 1053 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.55;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1086,123,0 chrVII 702109 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.21;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1417,159,0 chrVII 702168 . C A 1540 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.53;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1573,165,0 chrVII 702379 . G A 606 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.77;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:69:639,69,0 chrVII 702401 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.72;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1167,126,0 chrVII 702626 . T C 873 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.2204;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:99:906,102,0 chrVII 702670 . G T 722 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=14.16;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:81:755,81,0 chrVII 702748 . C T 822 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=15.51;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:93:855,93,0 chrVII 702790 . A C 669 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=14.87;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:702,78,0 chrVII 702791 . C T 683 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.18;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:716,78,0 chrVII 703157 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.71;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1705,183,0 chrVII 703857 . T G 1654 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.63;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1687,186,0 chrVII 704454 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.52;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1587,177,0 chrVII 704490 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1740,195,0 chrVII 704541 . C T 2233 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2266,243,0 chrVII 704949 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.20;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1216,138,0 chrVII 705215 . C T 2347 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2380,255,0 chrVII 705827 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.2427;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=20.26;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2018,219,0 chrVII 705962 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.60;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1063,114,0 chrVII 706722 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.58;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1660,186,0 chrVII 707026 . C T 814 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=17.32;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:93:847,93,0 chrVII 707182 . G A 397 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=16.54;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:430,48,0 chrVII 707507 . C T 765 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=35;QD=5.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,143:148:90:798,90,0 chrVII 707633 . A C 46.97 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.35;MQ0=65;QD=0.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:75:9:79,9,0 chrVII 707915 . G A 252 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=12.63;MQ0=57;QD=3.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:77:30:285,30,0 chrVII 707990 . T C 353.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.427;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=28.2116;MLEAC=1;MLEAF=0.500;MQ=19.16;MQ0=165;MQRankSum=1.467;QD=1.20;ReadPosRankSum=1.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:237,56:293:99:383,0,1838 chrVII 707993 . G A 1433.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.346;DP=301;Dels=0.00;FS=14.768;HaplotypeScore=25.8455;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=171;MQRankSum=3.519;QD=4.76;ReadPosRankSum=0.748;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,120:301:99:1463,0,803 chrVII 708297 . G A 1350 filter AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.15;MQ0=124;QD=6.85;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,197:197:99:1383,153,0 chrVII 708380 . T C 490.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.972;DP=549;Dels=0.00;FS=80.191;HaplotypeScore=45.0328;MLEAC=1;MLEAF=0.500;MQ=34.73;MQ0=87;MQRankSum=-14.989;QD=0.89;ReadPosRankSum=0.883;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:339,209:549:99:520,0,5730 chrVII 708403 . G A 497.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.001;DP=586;Dels=0.00;FS=216.600;HaplotypeScore=39.4340;MLEAC=1;MLEAF=0.500;MQ=30.36;MQ0=125;MQRankSum=-12.415;QD=0.85;ReadPosRankSum=0.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:342,238:586:99:527,0,5164 chrVII 708477 . T C 824.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.295;DP=372;Dels=0.00;FS=104.923;HaplotypeScore=7.4718;MLEAC=1;MLEAF=0.500;MQ=13.72;MQ0=169;MQRankSum=-0.590;QD=2.22;ReadPosRankSum=-0.551;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,169:372:99:854,0,934 chrVII 708677 . T C 546 filter AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=15.91;MQ0=130;QD=3.17;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:12,159:172:66:579,66,0 chrVII 708983 . T C 425.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=217;Dels=0.00;FS=1.937;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=11.84;MQ0=155;MQRankSum=1.207;QD=1.96;ReadPosRankSum=0.542;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:169,47:217:99:455,0,525 chrVII 708994 . T C 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DP=209;Dels=0.00;FS=12.639;HaplotypeScore=6.4239;MLEAC=1;MLEAF=0.500;MQ=12.91;MQ0=141;MQRankSum=1.487;QD=2.45;ReadPosRankSum=-2.027;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,64:209:99:542,0,579 chrVII 709503 . T C 72.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.32;MQ0=53;MQRankSum=-1.495;QD=1.21;ReadPosRankSum=1.495;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,58:60:12:105,12,0 chrVII 709734 . A C 639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=3.7239;MLEAC=2;MLEAF=1.00;MQ=14.24;MQ0=147;MQRankSum=-1.732;QD=3.31;ReadPosRankSum=1.578;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,192:193:75:672,75,0 chrVII 709804 . T C 862.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.084;DP=292;Dels=0.00;FS=194.919;HaplotypeScore=11.8781;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=100;MQRankSum=-1.874;QD=2.95;ReadPosRankSum=1.112;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,173:292:99:892,0,852 chrVII 709866 . A C 882 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.323;DP=84;Dels=0.00;FS=153.956;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=22;MQRankSum=2.189;QD=10.50;ReadPosRankSum=6.308;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,60:84:84:915,84,0 chrVII 710388 . C T 355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DP=286;Dels=0.00;FS=54.457;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=9.26;MQ0=231;MQRankSum=0.245;QD=1.24;ReadPosRankSum=0.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,200:286:99:385,0,255 chrVII 710413 . T C 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DP=302;Dels=0.00;FS=82.770;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=8.51;MQ0=255;MQRankSum=-0.075;QD=0.81;ReadPosRankSum=0.952;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:211,91:302:99:274,0,242 chrVII 710702 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.949;DP=434;Dels=0.00;FS=6.936;HaplotypeScore=41.2559;MLEAC=1;MLEAF=0.500;MQ=22.64;MQ0=146;MQRankSum=1.652;QD=0.20;ReadPosRankSum=1.072;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:378,51:434:99:118,0,3604 chrVII 710949 . T C 3918.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=371;Dels=0.00;FS=3.819;HaplotypeScore=18.9536;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=105;MQRankSum=-1.718;QD=10.56;ReadPosRankSum=-0.472;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:1,357:371:99:3918,453,0 chrVII 710997 . A G 95.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=79;Dels=0.00;FS=13.424;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=11.40;MQ0=67;MQRankSum=-1.479;QD=1.21;ReadPosRankSum=2.404;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:3,76:79:15:128,15,0 chrVII 711001 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;DP=77;Dels=0.00;FS=6.368;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=7.91;MQ0=64;MQRankSum=-0.761;QD=0.30;ReadPosRankSum=2.451;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,74:77:6:54,6,0 chrVII 711021 . A G 1286 filter AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=16.1119;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=51;QD=8.69;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,146:148:99:1319,150,0 chrVII 711063 . C T 6440.01 filter AC=2;AF=1.00;AN=2;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=9.1272;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=31;QD=15.12;SB=-2.224e+03 GT:AD:DP:GQ:PL 1/1:0,425:426:99:6440,708,0 chrVII 711066 . A T 6732.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=440;Dels=0.00;FS=2.566;HaplotypeScore=10.6380;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=32;MQRankSum=1.382;QD=15.30;ReadPosRankSum=2.677;SB=-2.408e+03 GT:AD:DP:GQ:PL 1/1:5,434:440:99:6732,730,0 chrVII 711237 . C T 4789.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.612;DP=572;Dels=0.00;FS=2.990;HaplotypeScore=32.5413;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=83;MQRankSum=-7.321;QD=8.37;ReadPosRankSum=3.834;SB=-2.280e+03 GT:AD:DP:GQ:PL 0/1:126,443:572:99:4789,0,1284 chrVII 711253 . C T 5154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.902;DP=556;Dels=0.00;FS=4.269;HaplotypeScore=56.3467;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=76;MQRankSum=-5.778;QD=9.27;ReadPosRankSum=1.733;SB=-2.282e+03 GT:AD:DP:GQ:PL 0/1:119,436:556:99:5154,0,1133 chrVII 711521 . A T 2488.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.980;DP=719;Dels=0.00;FS=10.184;HaplotypeScore=96.8974;MLEAC=1;MLEAF=0.500;MQ=46.62;MQ0=26;MQRankSum=-2.988;QD=3.46;ReadPosRankSum=-4.261;SB=-9.800e+02 GT:AD:DP:GQ:PL 0/1:532,187:719:99:2518,0,9537 chrVII 711738 . T C 3422.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.975;DP=773;Dels=0.00;FS=7.686;HaplotypeScore=28.0839;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=115;MQRankSum=-2.310;QD=4.43;ReadPosRankSum=-0.019;SB=-1.671e+03 GT:AD:DP:GQ:PL 0/1:312,453:773:99:3422,0,2241 chrVII 711807 . T A 5286.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.173;DP=661;Dels=0.00;FS=21.583;HaplotypeScore=54.1526;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=109;MQRankSum=5.115;QD=8.00;ReadPosRankSum=2.709;SB=-2.687e+03 GT:AD:DP:GQ:PL 0/1:259,402:661:99:5286,0,1914 chrVII 711997 . A G 300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.494;DP=767;Dels=0.00;FS=0.402;HaplotypeScore=62.4884;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=3;MQRankSum=-0.994;QD=0.39;ReadPosRankSum=-0.678;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:672,92:767:99:330,0,10008 chrVII 712059 . A G 896.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.905;DP=556;Dels=0.00;FS=8.675;HaplotypeScore=46.1541;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=0;MQRankSum=-0.562;QD=1.61;ReadPosRankSum=-0.132;SB=-3.770e+02 GT:AD:DP:GQ:PL 0/1:423,133:556:99:926,0,4638 chrVII 712089 . T G 797.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.927;DP=424;Dels=0.00;FS=2.548;HaplotypeScore=14.1499;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=20;MQRankSum=3.141;QD=1.88;ReadPosRankSum=0.766;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:318,101:424:99:827,0,3492 chrVII 712108 . G A 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.034;DP=360;Dels=0.00;FS=4.513;HaplotypeScore=15.9008;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=45;MQRankSum=0.775;QD=2.13;ReadPosRankSum=0.708;SB=-3.140e+02 GT:AD:DP:GQ:PL 0/1:274,86:360:99:796,0,2783 chrVII 712191 . T C 398.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.201;DP=362;Dels=0.00;FS=0.000;HaplotypeScore=9.7113;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=74;MQRankSum=0.960;QD=1.10;ReadPosRankSum=0.999;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:264,95:362:99:428,0,2327 chrVII 712249 . C T 3404.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.336;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=18.9718;MLEAC=2;MLEAF=1.00;MQ=25.65;MQ0=14;MQRankSum=-3.645;QD=10.47;ReadPosRankSum=-0.404;SB=3.01 GT:AD:DP:GQ:PL 1/1:40,285:325:71:3404,71,0 chrVII 712317 . A T 3858.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=359;Dels=0.00;FS=0.000;HaplotypeScore=6.5409;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=2;MQRankSum=-0.979;QD=10.75;ReadPosRankSum=2.436;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,356:359:99:3858,414,0 chrVII 712324 . C T 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.298;DP=444;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=1;MLEAF=0.500;MQ=23.16;MQ0=1;MQRankSum=0.475;QD=0.35;ReadPosRankSum=1.029;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:391,53:444:99:186,0,2900 chrVII 712564 . G A 287 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=4.28;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:36:320,36,0 chrVII 712615 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=19.66;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1527,168,0 chrVII 712668 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=18.71;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1081,120,0 chrVII 712716 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=21.38;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1444,168,0 chrVII 712739 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=20.47;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1507,171,0 chrVII 712761 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=20.47;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2162,237,0 chrVII 712764 . T C 1940 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=17.48;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1973,228,0 chrVII 712818 . A G 2674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=141;Dels=0.00;FS=9.605;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=1.491;QD=18.96;ReadPosRankSum=2.415;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:2707,309,0 chrVII 712838 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5574;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=20.61;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2816,318,0 chrVII 713046 . T C 2860 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.00;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2893,327,0 chrVII 713112 . A T 3671.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.53;SB=-1.823e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3671,399,0 chrVII 713260 . T A 2326 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7885;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.55;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2359,264,0 chrVII 713420 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2249,240,0 chrVII 713616 . A T 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.095;QD=20.75;ReadPosRankSum=2.369;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1942,213,0 chrVII 713643 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.82;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1973,216,0 chrVII 713658 . A G 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.992;QD=19.57;ReadPosRankSum=2.400;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1951,222,0 chrVII 713781 . T C 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.479;QD=20.98;ReadPosRankSum=1.648;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:893,99,0 chrVII 714122 . T A 1190 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.64;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1223,135,0 chrVII 714275 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.75;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1327,147,0 chrVII 714581 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1246,135,0 chrVII 714734 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.60;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1496,165,0 chrVII 714842 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.16;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1217,129,0 chrVII 715022 . T C 1595 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.71;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1628,183,0 chrVII 715094 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.91;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1786,207,0 chrVII 715153 . G T 1523 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.07;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1556,168,0 chrVII 715250 . T C 1829 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=21.52;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1862,210,0 chrVII 715267 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.71;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1897,210,0 chrVII 715298 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.89;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1644,189,0 chrVII 715306 . T G 1411 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.33;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1444,165,0 chrVII 715330 . T G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.962;QD=21.44;ReadPosRankSum=1.636;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1577,180,0 chrVII 715381 . T G 1327 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.43;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1360,153,0 chrVII 715404 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=7.8715;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.76;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1421,150,0 chrVII 715444 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.06;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1243,141,0 chrVII 715450 . T A 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.271;QD=17.14;ReadPosRankSum=1.407;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1130,126,0 chrVII 715532 . T C 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.260;HaplotypeScore=4.0048;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=0.173;QD=13.00;ReadPosRankSum=1.689;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1086,123,0 chrVII 715538 . T C 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=81;Dels=0.00;FS=7.879;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-0.563;QD=14.02;ReadPosRankSum=2.389;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1169,132,0 chrVII 715580 . G T 1059 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=13.07;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1092,123,0 chrVII 715586 . C G 1034 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=13.79;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1067,123,0 chrVII 715639 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=15.50;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:93:839,93,0 chrVII 715664 . T C 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-0.179;QD=15.52;ReadPosRankSum=1.673;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:933,105,0 chrVII 715757 . G A 873 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.19;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:906,96,0 chrVII 715781 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.67;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1153,123,0 chrVII 715785 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=15.53;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:965,111,0 chrVII 715893 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.44;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1533,171,0 chrVII 716403 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.18;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1688,186,0 chrVII 716490 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.39;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1623,174,0 chrVII 716827 . C A 1691 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1724,186,0 chrVII 716964 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=17.55;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:928,102,0 chrVII 716988 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=16.46;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:955,102,0 chrVII 717036 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=15.72;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1259,144,0 chrVII 717207 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.78;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1969,210,0 chrVII 717272 . T A 1522 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.95;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1555,165,0 chrVII 717846 . G A 2327 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.75;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2360,258,0 chrVII 718302 . T C 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=144;Dels=0.00;FS=3.629;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.012;QD=16.50;ReadPosRankSum=1.684;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2409,276,0 chrVII 718326 . C T 2555 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.87;SB=-1.717e+03 GT:AD:DP:GQ:PL 1/1:0,140:143:99:2588,282,0 chrVII 718558 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=24.05;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2510,270,0 chrVII 718585 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.81;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2542,273,0 chrVII 718657 . T C 3069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.233;QD=22.40;ReadPosRankSum=1.680;SB=-1.618e+03 GT:AD:DP:GQ:PL 1/1:1,133:137:99:3102,345,0 chrVII 718717 . G C 3735.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=22.37;SB=-1.575e+03 GT:AD:DP:GQ:PL 1/1:0,164:167:99:3735,420,0 chrVII 718778 . G A 3323.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.74;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3323,360,0 chrVII 718805 . T C 2824 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.06;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2857,324,0 chrVII 718859 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.33;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2716,309,0 chrVII 718887 . T C 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0716;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.256;QD=16.31;ReadPosRankSum=1.932;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:1957,216,0 chrVII 718890 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.90;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2061,219,0 chrVII 718949 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=96;Dels=0.00;FS=12.701;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.504;QD=16.31;ReadPosRankSum=3.364;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1599,183,0 chrVII 719000 . A G 1412 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;MQRankSum=-1.516;QD=14.71;ReadPosRankSum=1.696;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1445,162,0 chrVII 719008 . T C 1400 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=13.86;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1433,162,0 chrVII 719009 . G A 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=14.93;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1541,165,0 chrVII 719020 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=0;MQRankSum=-0.796;QD=12.72;ReadPosRankSum=1.607;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1445,162,0 chrVII 719031 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=0;QD=14.30;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:1835,201,0 chrVII 719036 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=14.68;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1927,204,0 chrVII 719064 . A G 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=0.248;QD=15.85;ReadPosRankSum=2.939;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:1840,207,0 chrVII 719140 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=16.67;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1850,198,0 chrVII 719144 . A G 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=-0.353;QD=14.34;ReadPosRankSum=1.700;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:1582,177,0 chrVII 719309 . T G 1673 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.8501;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.91;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1706,192,0 chrVII 719651 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.78;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1780,195,0 chrVII 719759 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=7.230;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.014;QD=21.21;ReadPosRankSum=2.367;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1921,216,0 chrVII 719906 . A G 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.291;QD=17.26;ReadPosRankSum=2.345;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:844,102,0 chrVII 720024 . T G 1410 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.05;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1443,165,0 chrVII 720028 . T A 1536 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.73;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1569,168,0 chrVII 720097 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=16.01;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1106,120,0 chrVII 720396 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.35;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1042,111,0 chrVII 720495 . G T 1535 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.03;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1568,171,0 chrVII 721728 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.80;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1123,126,0 chrVII 721791 . G A 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.673;QD=21.16;ReadPosRankSum=1.673;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1260,138,0 chrVII 722169 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.76;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1578,180,0 chrVII 722184 . T C 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.216;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.879;QD=20.46;ReadPosRankSum=1.679;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1363,156,0 chrVII 722610 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.58;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1004,108,0 chrVII 722637 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.02;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1068,114,0 chrVII 722662 . T A 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.226;QD=22.81;ReadPosRankSum=1.682;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1607,168,0 chrVII 723135 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.157;QD=21.53;ReadPosRankSum=1.680;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1454,165,0 chrVII 723300 . G A 2841 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.87;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2874,309,0 chrVII 723328 . C T 2272 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.11;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2305,252,0 chrVII 723984 . T C 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.3406;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.157;QD=20.53;ReadPosRankSum=1.659;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:2989,348,0 chrVII 724101 . G A 2745 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.45;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2778,306,0 chrVII 724542 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.07;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1081,117,0 chrVII 724567 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=16.72;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1036,114,0 chrVII 724581 . T C 871 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=15.55;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:904,99,0 chrVII 724903 . A T 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=3.869;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.222;QD=20.50;ReadPosRankSum=1.644;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:90:853,90,0 chrVII 724918 . G A 646 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.00;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:679,72,0 chrVII 724939 . G A 506 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=14.46;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:539,57,0 chrVII 725062 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=15.62;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1267,135,0 chrVII 725064 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=14.00;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1223,135,0 chrVII 725111 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1024;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=16.98;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1663,189,0 chrVII 725139 . A G 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=96;Dels=0.00;FS=11.471;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-0.603;QD=16.44;ReadPosRankSum=2.322;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1611,183,0 chrVII 725189 . T G 1239 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=14.24;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1272,141,0 chrVII 725190 . T C 1245 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=2.598;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=0.045;QD=13.83;ReadPosRankSum=2.922;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1278,141,0 chrVII 725193 . C G 1223 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=13.44;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1256,141,0 chrVII 725478 . C T 2803 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1253;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.81;SB=-1.705e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:2836,312,0 chrVII 725577 . G A 2078 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.79;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2111,225,0 chrVII 725739 . G A 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=23.8791;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.636;QD=17.98;ReadPosRankSum=0.609;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2011,213,0 chrVII 726186 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.23;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2157,243,0 chrVII 726262 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.44;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1705,189,0 chrVII 726291 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=23.89;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1514,168,0 chrVII 726396 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.11;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1228,138,0 chrVII 726495 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=14.22;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:81:758,81,0 chrVII 726509 . G C 806 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4869;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=14.39;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:839,96,0 chrVII 726585 . G A 758 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=12.9941;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=11.48;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:87:791,87,0 chrVII 726598 . C A 782 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=14.22;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:815,90,0 chrVII 726602 . A G 727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;MQRankSum=-1.732;QD=12.98;ReadPosRankSum=1.670;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:87:760,87,0 chrVII 726889 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=19.57;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1481,159,0 chrVII 727122 . T A 1618 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.11;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1651,177,0 chrVII 727210 . A G 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=64;Dels=0.00;FS=6.149;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.468;QD=19.39;ReadPosRankSum=2.889;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:3,60:64:99:1274,138,0 chrVII 727267 . T A 1430 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=20.72;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1463,159,0 chrVII 727279 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4240;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=18.71;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1436,159,0 chrVII 727326 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-0.427;QD=15.25;ReadPosRankSum=1.687;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1207,135,0 chrVII 727337 . A T 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=65.5187;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-0.605;QD=13.45;ReadPosRankSum=1.523;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1149,126,0 chrVII 727958 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.52;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1285,144,0 chrVII 727974 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.25;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1268,141,0 chrVII 728685 . A T 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.903;QD=20.83;ReadPosRankSum=1.586;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1512,162,0 chrVII 729182 . T C 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=3.010;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.350;QD=18.91;ReadPosRankSum=2.389;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1565,177,0 chrVII 729318 . T G 1158 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.03;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1191,138,0 chrVII 729333 . T C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=-1.121;QD=15.51;ReadPosRankSum=1.681;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1103,123,0 chrVII 729345 . T C 762 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=13.37;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:795,90,0 chrVII 729374 . T C 852 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=15.21;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:885,99,0 chrVII 729393 . G T 1016 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=15.63;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1049,114,0 chrVII 729861 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.84;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1256,132,0 chrVII 729983 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.49;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1473,165,0 chrVII 729999 . G T 1337 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.89;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1370,147,0 chrVII 730017 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.53;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1166,123,0 chrVII 730038 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.92;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1208,129,0 chrVII 730219 . A T 1321 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.32;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1354,144,0 chrVII 730225 . C T 1227 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.17;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1260,135,0 chrVII 730774 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.14;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:890,96,0 chrVII 730905 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:990,114,0 chrVII 730967 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.67;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:929,105,0 chrVII 730985 . T C 802 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.82;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:93:835,93,0 chrVII 731048 . C A 1189 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.77;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1222,129,0 chrVII 731090 . G T 788 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.70;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:87:821,87,0 chrVII 731133 . A T 831 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:864,96,0 chrVII 731219 . T A 960 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:993,108,0 chrVII 731275 . C T 1503 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.52;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1536,168,0 chrVII 731692 . C G 2928 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.78;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2961,336,0 chrVII 731914 . T C 2543 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.8825;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.12;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2576,294,0 chrVII 732112 . A G 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=13.2148;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.969;QD=16.71;ReadPosRankSum=1.637;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1871,213,0 chrVII 732382 . T A 1299 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.30;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1332,144,0 chrVII 732451 . A G 862 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=14.86;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:895,99,0 chrVII 732841 . T G 639 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.36;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:672,78,0 chrVII 732856 . T C 338 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.36;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:42:371,42,0 chrVII 733088 . G T 1197 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.64;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1230,138,0 chrVII 733142 . C T 593 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8894;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=9.72;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:69:626,69,0 chrVII 733257 . A G 1730 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.70;MQ0=0;QD=23.07;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1763,195,0 chrVII 733373 . G C 1240 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.00;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1273,147,0 chrVII 733441 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=17.91;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1573,174,0 chrVII 733453 . G C 1498 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=17.22;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1531,177,0 chrVII 733673 . T A 1204 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.30;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1237,135,0 chrVII 733771 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=16.32;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1257,141,0 chrVII 733821 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.52;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1991,213,0 chrVII 733930 . A C 1117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=71;Dels=0.00;FS=12.417;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-1.329;QD=15.73;ReadPosRankSum=2.901;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1150,129,0 chrVII 733945 . A C 1043 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=13.91;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1076,120,0 chrVII 733949 . A C 1057 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=13.21;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1090,123,0 chrVII 733970 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=12.77;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1208,132,0 chrVII 733979 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=10.05;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:968,111,0 chrVII 734330 . A T 2745 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=23.66;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2778,306,0 chrVII 734573 . T A 1706 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.45;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1739,189,0 chrVII 734612 . T C 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=93;Dels=0.00;FS=10.532;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.141;QD=20.97;ReadPosRankSum=2.859;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1983,225,0 chrVII 734668 . A T 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.56;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2254,243,0 chrVII 734741 . G C 2396 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.83;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2429,270,0 chrVII 734773 . C A 2486 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.40;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2519,273,0 chrVII 734774 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.33;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2489,273,0 chrVII 734831 . G C 1884 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=20.04;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1917,213,0 chrVII 734928 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.38;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1378,153,0 chrVII 735205 . T C 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=3.012;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.430;QD=22.93;ReadPosRankSum=2.375;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1569,174,0 chrVII 735279 . T A 1568 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=22.72;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1601,174,0 chrVII 735294 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.72;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1578,177,0 chrVII 735310 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.93;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1388,156,0 chrVII 735374 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=18.84;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1446,156,0 chrVII 735385 . T G 1650 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=18.75;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1683,195,0 chrVII 735444 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=22.28;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2350,246,0 chrVII 735461 . T C 2369 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=22.35;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2402,267,0 chrVII 735559 . A G 1599 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.04;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1632,189,0 chrVII 735628 . G A 1507 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=8;QD=19.08;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1540,168,0 chrVII 735681 . A G 1526 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=8;MQRankSum=-1.370;QD=18.17;ReadPosRankSum=2.905;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:3,79:84:99:1559,174,0 chrVII 735707 . A T 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.228;QD=18.65;ReadPosRankSum=1.687;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1506,171,0 chrVII 735728 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=18.75;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1289,147,0 chrVII 735738 . A T 1176 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=19.28;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1209,129,0 chrVII 735742 . A G 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=-0.391;QD=18.33;ReadPosRankSum=2.286;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1133,126,0 chrVII 735892 . C A 1272 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=21.93;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1305,141,0 chrVII 735893 . C G 1241 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=21.40;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1274,144,0 chrVII 735895 . T A 1260 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=22.91;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1293,138,0 chrVII 735936 . T C 701 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=18.45;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:81:734,81,0 chrVII 735958 . A G 175.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.30;SB=-7.804e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:24:208,24,0 chrVII 735962 . T C 153.06 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.20;SB=-7.807e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:21:186,21,0 chrVII 735972 . A G 98.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.668;QD=7.56;ReadPosRankSum=1.470;SB=-2.726e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:15:131,15,0 chrVII 735976 . T C 109.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.93;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:142,15,0 chrVII 736414 . G A 176.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=12.57;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:209,24,0 chrVII 736450 . G T 551 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=17.77;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:584,63,0 chrVII 736482 . C G 741 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=16.47;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:774,90,0 chrVII 736788 . T A 1304 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.60;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1337,141,0 chrVII 736902 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.01;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1714,186,0 chrVII 737189 . C A 2305 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.95;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2338,249,0 chrVII 737536 . G A 3427.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.835e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3427,366,0 chrVII 737579 . A G 2736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.097;QD=20.42;ReadPosRankSum=1.706;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,130:134:99:2769,309,0 chrVII 738192 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.92;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1089,123,0 chrVII 738263 . G C 575 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:69:608,69,0 chrVII 738379 . T C 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.176;DP=56;Dels=0.00;FS=4.472;HaplotypeScore=4.9878;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.670;QD=13.59;ReadPosRankSum=1.670;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:794,72,0 chrVII 738435 . T G 1403 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.92;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1436,165,0 chrVII 738466 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.90;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1642,183,0 chrVII 738493 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.96;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1430,153,0 chrVII 738565 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.61;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:935,99,0 chrVII 738573 . A T 955 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.10;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:988,108,0 chrVII 738759 . T C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=82;Dels=0.00;FS=2.984;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.746;QD=21.43;ReadPosRankSum=2.389;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1790,207,0 chrVII 738861 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=21.28;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1480,165,0 chrVII 738891 . A T 1272 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.99;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1305,144,0 chrVII 739067 . C G 2321 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.36;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2354,264,0 chrVII 739070 . C A 2193 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.04;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.58;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2226,240,0 chrVII 739081 . T C 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.282;QD=19.46;ReadPosRankSum=2.405;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2174,243,0 chrVII 739199 . A C 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=80;Dels=0.04;FS=5.868;HaplotypeScore=5.1420;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=-0.987;QD=13.65;ReadPosRankSum=2.908;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:3,73:77:99:1125,126,0 chrVII 739200 . C T 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=77;Dels=0.00;FS=5.924;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.592;QD=14.69;ReadPosRankSum=2.804;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1164,107,0 chrVII 739403 . C A 2457 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.3670;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.47;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2490,270,0 chrVII 739437 . C G 2306 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.45;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2339,267,0 chrVII 739469 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.06;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1965,219,0 chrVII 739476 . C G 1689 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.41;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1722,192,0 chrVII 739622 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.88;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1198,132,0 chrVII 739651 . A G 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.638;QD=18.22;ReadPosRankSum=1.672;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1090,123,0 chrVII 740339 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2480,288,0 chrVII 740372 . T C 2405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.701;QD=21.47;ReadPosRankSum=1.701;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2438,270,0 chrVII 740993 . A G 2005 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=117;Dels=0.00;FS=9.254;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.794;QD=17.14;ReadPosRankSum=3.230;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:4,113:117:99:2038,231,0 chrVII 741000 . A C 1709 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-0.925;QD=16.28;ReadPosRankSum=1.598;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1742,198,0 chrVII 741002 . A G 1723 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=16.25;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1756,195,0 chrVII 741047 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.12;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1700,180,0 chrVII 741068 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=16.59;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1460,156,0 chrVII 741442 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.67;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1036,111,0 chrVII 741692 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.91;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1867,204,0 chrVII 742062 . T C 671 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.97;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:704,81,0 chrVII 742069 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.78;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:781,84,0 chrVII 742081 . G A 766 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.28;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:799,87,0 chrVII 742219 . A T 630 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=17.50;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:663,72,0 chrVII 742255 . G A 485 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=10.78;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:518,57,0 chrVII 742270 . T C 513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-1.732;QD=10.69;ReadPosRankSum=1.516;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:63:546,63,0 chrVII 742276 . C T 407 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=9.04;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:48:440,48,0 chrVII 742290 . G A 526 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=10.12;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:559,60,0 chrVII 742513 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.287;QD=21.11;ReadPosRankSum=1.683;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1511,171,0 chrVII 742606 . A G 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=81;Dels=0.00;FS=3.716;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.563;QD=19.57;ReadPosRankSum=-0.260;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1618,186,0 chrVII 742787 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.20;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2087,228,0 chrVII 742966 . G C 2009 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8877;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.95;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2042,234,0 chrVII 743032 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.30;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1809,195,0 chrVII 743044 . T A 1530 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.39;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1563,171,0 chrVII 743068 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=16.40;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1689,189,0 chrVII 743263 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.09;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2082,225,0 chrVII 743456 . G A 1724 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.28;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1757,186,0 chrVII 743539 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.37;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1956,222,0 chrVII 743755 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.81;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2114,234,0 chrVII 743803 . T C 2191 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.59;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2224,249,0 chrVII 743899 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.35;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1844,210,0 chrVII 743903 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=90;Dels=0.00;FS=7.105;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.205;QD=19.79;ReadPosRankSum=2.395;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1814,201,0 chrVII 744064 . C T 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.266;QD=23.95;ReadPosRankSum=-0.400;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2524,267,0 chrVII 744086 . T C 2116 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.81;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2149,237,0 chrVII 744469 . A G 1778 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.44;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1811,201,0 chrVII 744547 . A G 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.270;QD=20.95;ReadPosRankSum=1.655;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1939,213,0 chrVII 744682 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.17;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1341,150,0 chrVII 744731 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.32;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1735,186,0 chrVII 744772 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1727,195,0 chrVII 744874 . T C 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.078;QD=18.18;ReadPosRankSum=1.681;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1251,141,0 chrVII 745003 . A C 1557 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.49;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1590,174,0 chrVII 745285 . T A 1375 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.93;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1408,153,0 chrVII 745446 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.06;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1270,141,0 chrVII 745560 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.43;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1259,135,0 chrVII 745588 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.72;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1421,156,0 chrVII 745712 . G T 958 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=16.81;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:991,111,0 chrVII 745730 . T G 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=0.838;QD=14.54;ReadPosRankSum=1.676;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:949,108,0 chrVII 745746 . C G 885 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=162.3734;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=14.05;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:918,102,0 chrVII 745777 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=15.03;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:905,99,0 chrVII 745888 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=15.45;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1068,117,0 chrVII 745891 . C T 983 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.12;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1016,111,0 chrVII 745981 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.8422;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.90;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1224,135,0 chrVII 746158 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.08;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1197,138,0 chrVII 746194 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.53;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1282,138,0 chrVII 746536 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.25;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:913,96,0 chrVII 746541 . A C 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=3.736;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-1.732;QD=15.60;ReadPosRankSum=1.666;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:93:844,93,0 chrVII 746615 . T C 399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;MQRankSum=-1.373;QD=5.54;ReadPosRankSum=2.311;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:51:432,51,0 chrVII 746628 . C A 768 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=9.72;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:87:801,87,0 chrVII 746824 . A G 1942 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.44;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1975,222,0 chrVII 746836 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.720;QD=19.49;ReadPosRankSum=1.693;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1768,201,0 chrVII 747045 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.96;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1339,147,0 chrVII 747090 . T G 930 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1450;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=13.68;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:963,108,0 chrVII 747244 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.1185;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.88;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1166,132,0 chrVII 747409 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.26;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1801,201,0 chrVII 747544 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.90;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1148,123,0 chrVII 747545 . A G 1064 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.34;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1097,123,0 chrVII 747860 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.22;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1782,198,0 chrVII 747874 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.08;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1655,189,0 chrVII 748014 . A G 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.142;QD=20.15;ReadPosRankSum=1.675;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1262,141,0 chrVII 748310 . A G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.088;QD=19.19;ReadPosRankSum=1.652;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1683,189,0 chrVII 748553 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1112,120,0 chrVII 748625 . A G 2204 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.70;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2237,252,0 chrVII 748643 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.346;QD=22.54;ReadPosRankSum=1.694;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2062,231,0 chrVII 749414 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7844;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.82;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1440,162,0 chrVII 749615 . A T 1817 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.00;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1850,201,0 chrVII 749702 . A G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.206;QD=16.80;ReadPosRankSum=1.691;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1444,168,0 chrVII 749720 . C T 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=3.4825;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-0.178;QD=16.85;ReadPosRankSum=1.599;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1347,147,0 chrVII 749782 . T C 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=80;Dels=0.00;FS=2.994;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.565;QD=12.75;ReadPosRankSum=2.387;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:2,76:80:99:1053,117,0 chrVII 749791 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.509;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-0.730;QD=12.78;ReadPosRankSum=1.690;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1094,126,0 chrVII 749804 . A G 964 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=10.83;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:997,114,0 chrVII 749818 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.61;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1148,123,0 chrVII 749837 . C A 1437 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=13.31;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1470,162,0 chrVII 749969 . A G 1796 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.64;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1829,207,0 chrVII 750123 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.44;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1405,150,0 chrVII 750173 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.07;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1318,150,0 chrVII 750272 . A T 1459 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.16;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1492,168,0 chrVII 750344 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.62;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2371,258,0 chrVII 750394 . C A 1378 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.62;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1411,162,0 chrVII 750612 . T A 3054 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.43;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3087,336,0 chrVII 750918 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.17;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2142,240,0 chrVII 750949 . C G 2036 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.85;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2069,234,0 chrVII 750972 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3001;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.33;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2330,252,0 chrVII 751238 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.96;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1658,183,0 chrVII 751388 . T A 1887 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.44;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1920,207,0 chrVII 751583 . A C 1466 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.65;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1499,168,0 chrVII 751595 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.73;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1588,168,0 chrVII 751660 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.53;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1439,159,0 chrVII 751910 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.2188;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.75;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1230,129,0 chrVII 751927 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.54;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:949,102,0 chrVII 752078 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.15;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1104,120,0 chrVII 752357 . A G 644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=37;Dels=0.00;FS=8.023;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.437;QD=17.41;ReadPosRankSum=2.317;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:2,35:37:78:677,78,0 chrVII 752411 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.18;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:877,99,0 chrVII 752477 . T G 1115 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.27;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1148,129,0 chrVII 752554 . T C 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.099;QD=22.21;ReadPosRankSum=1.683;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1610,183,0 chrVII 752597 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1514,162,0 chrVII 752843 . A G 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.670;QD=17.26;ReadPosRankSum=1.485;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1034,117,0 chrVII 752948 . G A 2708 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2326;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.91;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2741,297,0 chrVII 754427 . G T 351 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.0017;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=13.00;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:384,45,0 chrVII 754453 . C T 441 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=16.33;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:51:474,51,0 chrVII 754555 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:901,99,0 chrVII 754629 . C T 558 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=14.68;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:591,63,0 chrVII 754648 . C G 526 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=13.84;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:559,63,0 chrVII 754670 . G C 606 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=13.77;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:639,72,0 chrVII 754678 . T C 389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;MQRankSum=-0.774;QD=8.28;ReadPosRankSum=1.364;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:48:422,48,0 chrVII 754688 . T C 393 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=9.82;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:48:426,48,0 chrVII 754717 . C T 466 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=14.56;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:499,57,0 chrVII 754860 . C G 672 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.17;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:705,81,0 chrVII 754920 . A G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.938;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.466;QD=22.79;ReadPosRankSum=1.666;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1218,138,0 chrVII 755085 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.444;QD=21.29;ReadPosRankSum=1.606;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1651,183,0 chrVII 755127 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.43;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1491,159,0 chrVII 755157 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.00;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1251,141,0 chrVII 755549 . T A 794 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.64;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:827,90,0 chrVII 756297 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.01;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1754,192,0 chrVII 756484 . G A 3102 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=18.9718;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.88;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3135,345,0 chrVII 756717 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.68;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2922,315,0 chrVII 756925 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.51;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1735,195,0 chrVII 757121 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.72;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2036,225,0 chrVII 757351 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.3938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1337,150,0 chrVII 757758 . C G 894 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=6.8179;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=18.62;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,102,0 chrVII 758035 . G A 860 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.24;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:893,96,0 chrVII 758053 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.58;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:75:702,75,0 chrVII 758589 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1274,135,0 chrVII 758745 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1737,189,0 chrVII 759037 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.74;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1511,162,0 chrVII 759633 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.7680;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.91;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2417,258,0 chrVII 759759 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.19;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2537,276,0 chrVII 759896 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2436,264,0 chrVII 760589 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.03;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1622,183,0 chrVII 760757 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.25;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1967,207,0 chrVII 761160 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.18;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1910,204,0 chrVII 761877 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=108;Dels=0.00;FS=9.243;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.724;QD=20.56;ReadPosRankSum=3.213;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:2254,255,0 chrVII 761973 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.31;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1416,162,0 chrVII 762371 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1293,144,0 chrVII 763036 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.47;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2370,255,0 chrVII 763187 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.260;QD=20.75;ReadPosRankSum=1.693;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1880,216,0 chrVII 763227 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.4810;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.00;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2101,234,0 chrVII 763413 . T C 808 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.26;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,36:38:93:841,93,0 chrVII 763485 . T C 354 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.63;SB=-6.777e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:387,45,0 chrVII 763508 . C T 699 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:36:78:732,78,0 chrVII 763517 . A G 702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.385;QD=19.50;ReadPosRankSum=1.636;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:81:735,81,0 chrVII 763747 . G T 2255 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=25.92;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2288,243,0 chrVII 763960 . T C 359.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.221;DP=114;Dels=0.00;FS=66.554;HaplotypeScore=6.4786;MLEAC=1;MLEAF=0.500;MQ=39.23;MQ0=5;MQRankSum=1.341;QD=3.15;ReadPosRankSum=0.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,36:114:99:389,0,1348 chrVII 764155 . G A 805.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.958;DP=128;Dels=0.00;FS=52.945;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=2;MQRankSum=-3.484;QD=6.29;ReadPosRankSum=1.702;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:79,48:128:99:835,0,1428 chrVII 764218 . T C 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DP=123;Dels=0.00;FS=7.123;HaplotypeScore=22.2860;MLEAC=1;MLEAF=0.500;MQ=43.34;MQ0=8;MQRankSum=-2.091;QD=1.42;ReadPosRankSum=-4.914;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:87,36:123:99:205,0,1400 chrVII 764392 . G A 423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DP=196;Dels=0.00;FS=12.010;HaplotypeScore=10.9959;MLEAC=1;MLEAF=0.500;MQ=37.52;MQ0=12;MQRankSum=-3.966;QD=2.16;ReadPosRankSum=-0.127;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:133,63:196:99:453,0,2458 chrVII 764419 . G A 1144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.582;DP=219;Dels=0.00;FS=6.885;HaplotypeScore=10.1479;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=12;MQRankSum=-2.262;QD=5.22;ReadPosRankSum=0.217;SB=-5.190e+02 GT:AD:DP:GQ:PL 0/1:124,95:219:99:1174,0,2172 chrVII 764689 . A G 2836 filter AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=8;QD=16.88;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:2869,327,0 chrVII 764953 . C T 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.843;DP=130;Dels=0.00;FS=98.636;HaplotypeScore=7.4820;MLEAC=1;MLEAF=0.500;MQ=43.26;MQ0=11;MQRankSum=-2.380;QD=2.99;ReadPosRankSum=0.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,40:130:99:419,0,1677 chrVII 764998 . T A 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;MQRankSum=-0.472;QD=18.45;ReadPosRankSum=1.646;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2266,246,0 chrVII 765005 . T A 1572.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.584;DP=118;Dels=0.00;FS=62.145;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=49.40;MQ0=0;MQRankSum=2.413;QD=13.32;ReadPosRankSum=3.552;SB=-5.710e+02 GT:AD:DP:GQ:PL 0/1:19,99:118:67:1602,0,67 chrVII 765286 . A C 2962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=3.840;HaplotypeScore=6.8053;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.054;QD=21.31;ReadPosRankSum=1.657;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2995,342,0 chrVII 765415 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.869;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.421;QD=20.40;ReadPosRankSum=2.396;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1889,216,0 chrVII 766068 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1442,159,0 chrVII 766129 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.29;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1007,111,0 chrVII 766737 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.70;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1270,141,0 chrVII 766797 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.91;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1238,132,0 chrVII 766938 . A G 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=21.09;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1404,159,0 chrVII 767046 . C A 996 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=12.94;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1029,114,0 chrVII 767234 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=75.1926;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.79;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1456,165,0 chrVII 767236 . A G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=75.1926;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=-0.400;QD=18.68;ReadPosRankSum=1.688;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1509,171,0 chrVII 767259 . A G 1561 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.54;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1594,183,0 chrVII 767304 . T C 838 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.61;MQ0=0;QD=13.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:871,99,0 chrVII 767328 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=14.71;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1004,111,0 chrVII 767344 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=15.69;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1100,123,0 chrVII 767355 . C T 950 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=13.19;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:983,108,0 chrVII 767373 . T C 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;MQRankSum=-0.796;QD=11.72;ReadPosRankSum=1.639;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:900,102,0 chrVII 767698 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=16.79;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1225,138,0 chrVII 768079 . T C 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.735;QD=21.77;ReadPosRankSum=1.680;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1470,168,0 chrVII 768165 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.56;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1752,186,0 chrVII 768214 . T C 887 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:920,105,0 chrVII 768250 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.10;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1038,111,0 chrVII 768310 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.56;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1262,135,0 chrVII 768334 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.43;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1452,162,0 chrVII 768353 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.75;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1613,183,0 chrVII 768496 . A G 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.288;QD=18.97;ReadPosRankSum=1.688;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1513,171,0 chrVII 768552 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.69;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1486,159,0 chrVII 768583 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.71;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1249,144,0 chrVII 768616 . T A 1159 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.98;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1192,126,0 chrVII 768739 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.10;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1445,159,0 chrVII 768961 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.62;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1171,132,0 chrVII 769024 . A T 907 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.87;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:940,102,0 chrVII 769063 . G A 838 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.05;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:871,93,0 chrVII 769285 . T C 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.229;QD=16.25;ReadPosRankSum=1.621;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1057,117,0 chrVII 769305 . T A 1072 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.29;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1105,120,0 chrVII 769360 . A G 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=48;Dels=0.00;FS=14.898;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.128;QD=18.02;ReadPosRankSum=2.854;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:99:898,102,0 chrVII 769395 . T C 811 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.34;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:844,96,0 chrVII 769548 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.25;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1390,147,0 chrVII 769689 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.12;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2105,243,0 chrVII 769730 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.29;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2642,288,0 chrVII 769748 . A C 2266 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.41;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2299,258,0 chrVII 769843 . T C 1810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=2.619;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.632;QD=22.62;ReadPosRankSum=2.388;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1843,207,0 chrVII 770185 . A G 2444 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.84;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2477,276,0 chrVII 770239 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.21;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1730,183,0 chrVII 770542 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.64;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2110,231,0 chrVII 770589 . T C 1881 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5188;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.45;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1914,213,0 chrVII 771015 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.41;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2238,240,0 chrVII 771068 . G A 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.260;QD=21.44;ReadPosRankSum=-0.260;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1770,189,0 chrVII 771837 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=21.39;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1252,144,0 chrVII 771969 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.32;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1619,174,0 chrVII 772150 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=14.70;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:724,78,0 chrVII 772516 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.41;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1372,156,0 chrVII 772517 . C A 1446 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.66;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1479,156,0 chrVII 772669 . T G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.00;FS=4.318;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.490;QD=19.86;ReadPosRankSum=1.697;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2079,234,0 chrVII 772705 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.84;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2263,252,0 chrVII 772975 . T C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=66;Dels=0.00;FS=3.748;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.541;QD=19.70;ReadPosRankSum=1.678;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1333,153,0 chrVII 772978 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.41;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1421,153,0 chrVII 773040 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.1738;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.58;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1325,153,0 chrVII 773140 . A G 897 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=17.94;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:930,105,0 chrVII 773144 . A C 869 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=18.89;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:902,102,0 chrVII 773146 . T C 771 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=-0.423;QD=17.13;ReadPosRankSum=-1.578;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:77:804,77,0 chrVII 773157 . T G 660 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=16.10;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:693,78,0 chrVII 773198 . A G 503 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.77;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:536,60,0 chrVII 773402 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.23;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1300,147,0 chrVII 773458 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.99;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1528,165,0 chrVII 773484 . A T 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=19.25;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1034,111,0 chrVII 773492 . T G 898 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.11;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:931,105,0 chrVII 773594 . C G 1225 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.27;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1258,144,0 chrVII 773614 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.39;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1118,129,0 chrVII 773709 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=19.40;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1527,177,0 chrVII 773807 . A G 1717 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=23.85;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1750,189,0 chrVII 773833 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=20.75;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1174,135,0 chrVII 773834 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=20.56;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1164,132,0 chrVII 773858 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=20.64;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1292,144,0 chrVII 773895 . T C 1489 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=22.91;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1522,174,0 chrVII 773950 . T A 1635 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=21.51;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1668,177,0 chrVII 773955 . T C 1444 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=20.93;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1477,168,0 chrVII 773971 . A T 1145 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=19.74;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1178,129,0 chrVII 773998 . G A 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=-1.732;QD=15.79;ReadPosRankSum=1.659;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:87:775,87,0 chrVII 773999 . A G 723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=-1.732;QD=15.38;ReadPosRankSum=1.659;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:84:756,84,0 chrVII 774009 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=14.09;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:850,90,0 chrVII 774012 . C T 845 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=14.57;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:93:878,93,0 chrVII 774023 . T A 971 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=15.41;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1004,108,0 chrVII 774035 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.75;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1037,114,0 chrVII 774039 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=14.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1160,126,0 chrVII 774082 . A T 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=0.055;QD=15.33;ReadPosRankSum=1.659;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1489,162,0 chrVII 774107 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.25;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2228,246,0 chrVII 774186 . T A 1850 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.29;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1883,198,0 chrVII 774230 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=6.178;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.203;QD=22.07;ReadPosRankSum=2.906;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1688,189,0 chrVII 774283 . G T 1674 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.93;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1707,183,0 chrVII 774330 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.01;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1930,210,0 chrVII 774447 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=79;Dels=0.00;FS=2.836;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-1.122;QD=12.96;ReadPosRankSum=2.260;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1057,120,0 chrVII 774460 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4318;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=15.09;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1270,138,0 chrVII 774646 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.17;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1528,174,0 chrVII 774677 . G C 1434 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.28;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1467,165,0 chrVII 774950 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8705;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.91;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1727,186,0 chrVII 775100 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=18.4583;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.10;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2249,243,0 chrVII 775204 . A G 2486 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2519,285,0 chrVII 775301 . T C 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.179;QD=20.56;ReadPosRankSum=1.613;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1863,207,0 chrVII 776113 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.9179;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.50;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2329,252,0 chrVII 776173 . G A 3839.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=26.66;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3839,414,0 chrVII 776483 . T C 2599 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.6057;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.17;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2632,294,0 chrVII 776488 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;DP=151;Dels=0.00;FS=2.422;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-0.863;QD=16.24;ReadPosRankSum=3.353;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:4,145:151:99:2485,276,0 chrVII 776502 . G A 2644 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.36;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2677,288,0 chrVII 777866 . A T 459 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.12;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:492,54,0 chrVII 777959 . T G 1180 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.585;QD=25.11;ReadPosRankSum=1.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1213,138,0 chrVII 778064 . C T 525 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.87;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:60:558,60,0 chrVII 778108 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.50;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:753,87,0 chrVII 778136 . A T 1013 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.71;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1046,114,0 chrVII 778162 . T A 883 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.02;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:916,99,0 chrVII 778255 . T A 2281 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.28;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2314,249,0 chrVII 778265 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.37;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2270,246,0 chrVII 778290 . T G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.155;QD=20.62;ReadPosRankSum=1.696;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2013,225,0 chrVII 778326 . G T 1230 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.21;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1263,135,0 chrVII 778489 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=24.27;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1975,222,0 chrVII 778561 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=21.21;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1730,189,0 chrVII 778614 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=19.49;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1456,165,0 chrVII 778618 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.36;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1355,159,0 chrVII 778637 . C G 1218 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=16.92;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1251,141,0 chrVII 778789 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0564;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.28;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2033,213,0 chrVII 778828 . A C 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=3.793;HaplotypeScore=7.1653;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-1.618;QD=21.13;ReadPosRankSum=1.694;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1977,225,0 chrVII 778881 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=19.93;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1687,189,0 chrVII 778888 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=19.22;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1551,168,0 chrVII 778901 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=16.77;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1140,129,0 chrVII 779120 . T C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=0.29;SB=-5.868e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:6:50,6,0 chrVII 779127 . A G 178.03 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.34;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:24:211,24,0 chrVII 779132 . G A 275 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=3.24;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:33:308,33,0 chrVII 779150 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=7.51;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:87:829,87,0 chrVII 779170 . T G 1092 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=10.71;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1125,129,0 chrVII 779185 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=14.00;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1629,183,0 chrVII 779229 . T C 2602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=3.144;HaplotypeScore=9.2145;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=1.233;QD=19.56;ReadPosRankSum=1.706;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2635,297,0 chrVII 779264 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.80;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2675,306,0 chrVII 779319 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=14.05;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1579,174,0 chrVII 779320 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.119;DP=113;Dels=0.00;FS=5.303;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=-1.152;QD=14.14;ReadPosRankSum=3.247;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:4,105:113:99:1631,189,0 chrVII 779356 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=1.376;QD=17.55;ReadPosRankSum=1.685;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,147:149:99:2648,297,0 chrVII 779385 . T C 3760.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=6.0405;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=-1.311;QD=19.89;ReadPosRankSum=1.714;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,188:189:99:3760,423,0 chrVII 779446 . A G 3101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.337;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;MQRankSum=1.034;QD=21.53;ReadPosRankSum=0.289;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3134,343,0 chrVII 779458 . T C 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;MQRankSum=0.465;QD=20.09;ReadPosRankSum=1.648;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:1,122:127:99:2584,294,0 chrVII 779532 . A G 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;MQRankSum=-0.923;QD=19.12;ReadPosRankSum=1.700;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2098,237,0 chrVII 779554 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9897;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=19.55;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2027,216,0 chrVII 779581 . G T 1644 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=18.27;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1677,186,0 chrVII 779595 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=98;Dels=0.00;FS=13.846;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.027;QD=18.31;ReadPosRankSum=3.367;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1827,207,0 chrVII 779721 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=14.10;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1654,189,0 chrVII 779766 . T G 1369 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=18.3212;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=12.33;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1402,156,0 chrVII 779781 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=59.3351;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=14.15;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1236,132,0 chrVII 779803 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=12.26;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:842,96,0 chrVII 779827 . A C 597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;MQRankSum=-1.732;QD=12.44;ReadPosRankSum=1.660;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:72:630,72,0 chrVII 779835 . T C 552 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=39.4130;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=13.14;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:585,66,0 chrVII 779908 . A T 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=-0.173;QD=17.57;ReadPosRankSum=1.617;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1087,117,0 chrVII 779916 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.60;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1036,111,0 chrVII 779967 . G C 1097 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=18.59;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1130,129,0 chrVII 780023 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=19.40;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1546,171,0 chrVII 780033 . T G 1511 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=18.65;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1544,174,0 chrVII 780050 . A T 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;MQRankSum=-0.753;QD=18.76;ReadPosRankSum=1.694;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1759,186,0 chrVII 780103 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=14.89;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1001,111,0 chrVII 780143 . C T 341 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=28.8174;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=10.03;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:374,42,0 chrVII 780160 . A G 254 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.77;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:33:287,33,0 chrVII 780173 . G A 280 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.67;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:313,33,0 chrVII 780206 . C G 706 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=11.39;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:739,84,0 chrVII 780207 . G A 751 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=12.11;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:784,84,0 chrVII 780213 . T G 731 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=10.59;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:764,87,0 chrVII 780243 . T A 81.26 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=63.6117;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=1.11;SB=-8.573e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:15:114,15,0 chrVII 780279 . C G 1555 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=17.47;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1588,180,0 chrVII 780295 . T A 1822 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.59;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1855,204,0 chrVII 780373 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=6.214;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;MQRankSum=0.640;QD=23.67;ReadPosRankSum=1.694;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2211,246,0 chrVII 780521 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.06;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1865,207,0 chrVII 780617 . G C 1659 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1559;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.27;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1692,192,0 chrVII 780641 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.19;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1653,186,0 chrVII 780725 . T A 1838 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.76;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1871,201,0 chrVII 780728 . T C 1850 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.957;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.446;QD=19.07;ReadPosRankSum=1.696;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1883,207,0 chrVII 780734 . A G 1828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=2.934;HaplotypeScore=5.9982;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=0.227;QD=17.75;ReadPosRankSum=2.378;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1861,213,0 chrVII 780773 . C T 2147 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.17;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2180,231,0 chrVII 780848 . T C 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.008;QD=20.59;ReadPosRankSum=1.638;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2319,261,0 chrVII 780980 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.6418;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.64;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2370,261,0 chrVII 781040 . A T 1924 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=24.05;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1957,216,0 chrVII 781409 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=88;Dels=0.00;FS=17.341;HaplotypeScore=4.0048;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=2.116;QD=16.65;ReadPosRankSum=2.920;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1498,171,0 chrVII 781419 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=17.96;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1416,156,0 chrVII 781424 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=15.94;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1340,153,0 chrVII 781441 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=16.13;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1565,174,0 chrVII 781578 . A G 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.239;QD=18.47;ReadPosRankSum=1.673;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1104,123,0 chrVII 781634 . T C 601 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.17;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,32:35:72:634,72,0 chrVII 782072 . G T 1521 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.75;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1554,168,0 chrVII 782096 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.213;QD=19.82;ReadPosRankSum=1.689;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1619,183,0 chrVII 782147 . C T 2065 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2098,234,0 chrVII 782249 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.22;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2166,234,0 chrVII 782333 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0733;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.50;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2103,243,0 chrVII 782443 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.13;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1808,201,0 chrVII 783224 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.51;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1516,174,0 chrVII 783795 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.01;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1508,174,0 chrVII 783845 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.29;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2106,228,0 chrVII 783979 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=2.600;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.674;QD=19.24;ReadPosRankSum=2.318;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1476,162,0 chrVII 783986 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.04;FS=0.000;HaplotypeScore=12.5913;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.10;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1517,165,0 chrVII 784161 . T G 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=11.1102;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.449;QD=17.49;ReadPosRankSum=2.392;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1537,180,0 chrVII 784197 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.08;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2219,246,0 chrVII 784337 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.37;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2393,270,0 chrVII 785462 . G T 1323 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.2566;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.21;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1356,150,0 chrVII 786108 . A G 3454.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.43;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:3454,393,0 chrVII 786402 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.29;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2212,237,0 chrVII 787546 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:991,105,0 chrVII 787750 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:843,90,0 chrVII 788060 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.49;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1184,126,0 chrVII 788427 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.67;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1508,177,0 chrVII 788621 . G A 2820 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.93;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2853,309,0 chrVII 788938 . A G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.479;QD=17.17;ReadPosRankSum=1.695;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1647,183,0 chrVII 788947 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=17.85;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1729,192,0 chrVII 789015 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.76;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1594,174,0 chrVII 789273 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.56;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1815,207,0 chrVII 789318 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.75;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1533,171,0 chrVII 789498 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.34;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1702,180,0 chrVII 789513 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.06;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1634,177,0 chrVII 789553 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.04;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1332,141,0 chrVII 789609 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1701,192,0 chrVII 789681 . A C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.519;QD=19.62;ReadPosRankSum=1.679;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1328,153,0 chrVII 789735 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.36;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1682,186,0 chrVII 790909 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.30;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1819,204,0 chrVII 791455 . A G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.543;QD=17.76;ReadPosRankSum=1.681;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1241,138,0 chrVII 791548 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.71;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1607,174,0 chrVII 791920 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.08;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1407,159,0 chrVII 793139 . T A 2648 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.98;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2681,291,0 chrVII 793418 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.83;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2393,270,0 chrVII 793481 . T A 1973 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.61;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2006,216,0 chrVII 794142 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.80;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1973,222,0 chrVII 794225 . G T 2671 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.55;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2704,300,0 chrVII 794286 . T C 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=4.019;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.515;QD=20.51;ReadPosRankSum=1.701;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2310,264,0 chrVII 794340 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.84;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2568,276,0 chrVII 794971 . T C 1403 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.00;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1436,162,0 chrVII 795133 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.14;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1308,147,0 chrVII 795142 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.99;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1341,144,0 chrVII 795163 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.78;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1280,144,0 chrVII 795193 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.58;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1310,144,0 chrVII 795439 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.65;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1809,192,0 chrVII 795501 . A G 1908 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4486;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.47;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1941,219,0 chrVII 795876 . T G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=89;Dels=0.00;FS=3.547;HaplotypeScore=12.5618;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.121;QD=19.67;ReadPosRankSum=1.692;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,85:89:99:1784,198,0 chrVII 795913 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.52;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2551,273,0 chrVII 795956 . T C 2772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.658;HaplotypeScore=5.9147;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.732;QD=21.16;ReadPosRankSum=1.492;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2805,312,0 chrVII 796217 . T G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.427;QD=23.00;ReadPosRankSum=1.687;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1827,198,0 chrVII 796263 . A G 1916 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.53;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1949,225,0 chrVII 797305 . T C 1287 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.50;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1320,150,0 chrVII 797326 . A G 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.826;QD=15.57;ReadPosRankSum=1.679;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,64:68:99:1092,126,0 chrVII 797329 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.45;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1102,123,0 chrVII 797633 . C A 1360 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.89;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1393,159,0 chrVII 797707 . T C 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=6.911;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.846;QD=18.67;ReadPosRankSum=2.234;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1097,126,0 chrVII 797862 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.19;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1786,195,0 chrVII 797870 . G C 1759 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.19;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1792,201,0 chrVII 797877 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.10;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1626,183,0 chrVII 797948 . T G 1603 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.82;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1636,186,0 chrVII 798046 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.28;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1459,165,0 chrVII 799148 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1635,177,0 chrVII 799244 . T C 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.064;HaplotypeScore=3.5676;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.732;QD=19.20;ReadPosRankSum=1.689;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1607,183,0 chrVII 799451 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.1936;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.81;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2010,216,0 chrVII 799613 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.01;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1644,177,0 chrVII 799934 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.91;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1567,177,0 chrVII 800352 . T C 440 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.71;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:0,23:28:54:473,54,0 chrVII 801136 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.96;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1123,120,0 chrVII 801316 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1852,201,0 chrVII 801487 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1094,126,0 chrVII 801970 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.30;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1313,144,0 chrVII 802238 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=68.1526;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.904;QD=0.28;ReadPosRankSum=-0.806;SB=-7.318e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:6:53,6,0 chrVII 802512 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.26;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1126,120,0 chrVII 802550 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.20;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1165,129,0 chrVII 803204 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.68;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1738,192,0 chrVII 803633 . A T 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.642;QD=22.18;ReadPosRankSum=1.687;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1741,192,0 chrVII 804257 . T C 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=2.729;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.272;QD=19.10;ReadPosRankSum=2.335;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1676,192,0 chrVII 804353 . T C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.957;QD=19.24;ReadPosRankSum=1.681;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,66:70:99:1380,156,0 chrVII 804602 . A G 1657 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.05;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1690,192,0 chrVII 804812 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4558;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.15;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1406,159,0 chrVII 805337 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.4261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:93:99:2204,237,0 chrVII 806040 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=98;Dels=0.00;FS=3.533;HaplotypeScore=9.0437;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.018;QD=18.73;ReadPosRankSum=1.625;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1869,213,0 chrVII 807532 . G T 1130 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.23;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1163,123,0 chrVII 807533 . A C 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=1.164;QD=16.85;ReadPosRankSum=1.448;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1061,120,0 chrVII 807662 . T A 1420 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.68;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1453,159,0 chrVII 807714 . G C 1726 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.05;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1759,198,0 chrVII 807765 . G T 1627 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.99;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1660,180,0 chrVII 807996 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.63;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1211,141,0 chrVII 808011 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.68;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1273,147,0 chrVII 808287 . C T 733 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=16.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:90:766,90,0 chrVII 808336 . T C 1076 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1109,129,0 chrVII 808820 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.65;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1059,117,0 chrVII 810523 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=15.63;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1252,144,0 chrVII 810921 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.34;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1329,150,0 chrVII 810987 . A G 1149 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.53;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1182,132,0 chrVII 810990 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=16.52;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1173,129,0 chrVII 811131 . C T 2817 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=22.54;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2850,312,0 chrVII 811192 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=24.50;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2042,213,0 chrVII 811282 . A C 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.247;QD=19.11;ReadPosRankSum=1.694;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1772,201,0 chrVII 811300 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=19.30;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1982,225,0 chrVII 823328 . A G 142.06 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.2543;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=3.84;SB=-1.061e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:21:175,21,0 chrVII 823409 . T G 1796 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=23.95;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1829,204,0 chrVII 823436 . C A 891 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=18.96;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:924,108,0 chrVII 823442 . A T 837 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=4.130;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=0.079;QD=18.60;ReadPosRankSum=1.654;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:96:870,96,0 chrVII 823443 . C G 801 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=17.04;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:47:96:834,96,0 chrVII 823611 . T G 1202 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.03;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1235,141,0 chrVII 823615 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=19.40;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1197,135,0 chrVII 823674 . A G 1204 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=17.45;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1237,141,0 chrVII 824079 . C A 1894 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=25.25;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1927,207,0 chrVII 824136 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.66;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1414,153,0 chrVII 824168 . C A 1319 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.3500;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.55;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1352,144,0 chrVII 825141 . T A 1299 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.62;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1332,144,0 chrVII 826599 . G A 3016 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8988;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.72;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:3049,321,0 chrVII 827509 . G C 1775 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.05;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1808,204,0 chrVII 827544 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.88;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1411,159,0 chrVII 827791 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.44;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1920,210,0 chrVII 827996 . T C 961 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=17.80;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:994,111,0 chrVII 828031 . C T 781 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=15.62;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:814,87,0 chrVII 828034 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=14.58;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:90:835,90,0 chrVII 828517 . A G 1942 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.66;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1975,222,0 chrVII 828666 . A G 1323 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.46;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1356,153,0 chrVII 828688 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.27;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1239,141,0 chrVII 828816 . A T 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.132;QD=13.08;ReadPosRankSum=1.640;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1040,114,0 chrVII 828825 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=16.49;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1286,147,0 chrVII 828863 . C A 1498 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.72;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1531,162,0 chrVII 829194 . T G 1325 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.72;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1358,156,0 chrVII 829589 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.10;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1552,168,0 chrVII 829617 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.30;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1332,147,0 chrVII 829683 . A G 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.996;QD=18.92;ReadPosRankSum=1.689;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1547,174,0 chrVII 829847 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1505,159,0 chrVII 829946 . G C 1106 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.27;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1139,132,0 chrVII 829998 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=17.76;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1010,117,0 chrVII 830281 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:927,102,0 chrVII 830676 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.31;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1290,138,0 chrVII 830690 . T C 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=58;Dels=0.00;FS=3.168;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.309;QD=16.47;ReadPosRankSum=1.670;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,55:58:99:988,114,0 chrVII 830766 . A C 1946 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.62;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1979,222,0 chrVII 830771 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=23.67;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2092,225,0 chrVII 830787 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.26;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1903,201,0 chrVII 830921 . A G 1540 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.39;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1573,177,0 chrVII 830992 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.23;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1052,114,0 chrVII 831041 . A G 869 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.31;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:902,102,0 chrVII 831108 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.48;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1303,141,0 chrVII 831291 . G A 2021 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.97;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2054,228,0 chrVII 831330 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.59;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2486,270,0 chrVII 831597 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=14.41;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1027,114,0 chrVII 832050 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.18;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1092,123,0 chrVII 832073 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.90;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1356,144,0 chrVII 832077 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=17.00;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1325,147,0 chrVII 832151 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.897;QD=18.43;ReadPosRankSum=1.690;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1563,177,0 chrVII 832207 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2332;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.12;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1773,195,0 chrVII 832415 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.36;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1575,168,0 chrVII 832717 . T C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.222;QD=22.06;ReadPosRankSum=1.643;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1754,192,0 chrVII 832872 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.56;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2492,273,0 chrVII 833104 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.74;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1553,162,0 chrVII 833158 . A C 1110 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=15.86;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1143,129,0 chrVII 833212 . C T 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1880;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.816;QD=16.27;ReadPosRankSum=1.414;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1465,159,0 chrVII 833214 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9766;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=16.00;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1505,171,0 chrVII 833529 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.23;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1498,159,0 chrVII 833796 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.00;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1776,192,0 chrVII 834267 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3927;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.27;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2260,249,0 chrVII 834928 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.64;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1872,207,0 chrVII 835147 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=97;Dels=0.00;FS=8.044;HaplotypeScore=7.8563;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.248;QD=21.08;ReadPosRankSum=3.364;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:4,92:97:99:2078,234,0 chrVII 835248 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=3.218;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.178;QD=19.63;ReadPosRankSum=1.635;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2133,237,0 chrVII 835894 . T G 2599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.503;QD=21.48;ReadPosRankSum=1.675;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2632,291,0 chrVII 836056 . C T 5585.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=19.9274;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.687;QD=24.07;ReadPosRankSum=1.536;SB=-2.545e+03 GT:AD:DP:GQ:PL 1/1:1,229:231:99:5585,592,0 chrVII 836144 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.09;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2596,285,0 chrVII 836201 . T G 2190 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.47;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2223,252,0 chrVII 836443 . T C 1671 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.70;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1704,189,0 chrVII 837183 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.25;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1268,135,0 chrVII 837417 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1199,132,0 chrVII 837489 . G C 1087 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.47;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1120,126,0 chrVII 837741 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.94;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1613,186,0 chrVII 837778 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.02;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2243,240,0 chrVII 837909 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.43;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1831,204,0 chrVII 838145 . A G 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=2.901;HaplotypeScore=7.6379;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.958;QD=19.78;ReadPosRankSum=2.388;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2407,264,0 chrVII 838381 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.46;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2870,318,0 chrVII 838490 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.16;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1758,195,0 chrVII 838500 . A C 1783 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.19;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1816,210,0 chrVII 838743 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4406;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.93;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1647,177,0 chrVII 838842 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.30;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1616,186,0 chrVII 839088 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.80;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2518,267,0 chrVII 839196 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=22.37;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1711,183,0 chrVII 839211 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=74;Dels=0.00;FS=9.380;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-1.948;QD=16.86;ReadPosRankSum=3.335;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1281,144,0 chrVII 839218 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.60;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1230,135,0 chrVII 839505 . C A 1285 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.85;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1318,147,0 chrVII 839538 . T A 986 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.60;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1019,114,0 chrVII 839652 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.11;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1050,117,0 chrVII 839712 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.23;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1243,135,0 chrVII 839880 . A G 1575 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.16;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1608,180,0 chrVII 840315 . C T 2337 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.7480;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.25;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2370,255,0 chrVII 840576 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1338,144,0 chrVII 840620 . A T 357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=0.157;QD=7.60;ReadPosRankSum=1.575;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:42:390,42,0 chrVII 840622 . A G 461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=-0.654;QD=9.81;ReadPosRankSum=1.501;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:57:494,57,0 chrVII 840681 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.10;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1867,204,0 chrVII 840852 . T G 1321 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.64;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1354,153,0 chrVII 841068 . T G 1195 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.25;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1228,138,0 chrVII 841693 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.75;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1929,216,0 chrVII 841726 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.2722;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.109;QD=18.34;ReadPosRankSum=1.697;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1904,216,0 chrVII 841859 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.23;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1368,153,0 chrVII 842036 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1818,198,0 chrVII 842206 . T C 1787 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.02;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1820,207,0 chrVII 842381 . T A 2257 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.13;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2290,246,0 chrVII 842514 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.97;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1513,168,0 chrVII 842565 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.79;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1480,162,0 chrVII 842585 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.57;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1456,165,0 chrVII 842605 . A C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.808;QD=18.48;ReadPosRankSum=1.694;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1715,192,0 chrVII 842630 . A C 1778 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.67;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1811,198,0 chrVII 842947 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.55;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1187,135,0 chrVII 843110 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.64;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1550,165,0 chrVII 843276 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.06;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1621,171,0 chrVII 843390 . G C 2107 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.95;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2140,237,0 chrVII 843706 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.27;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1729,186,0 chrVII 843717 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.06;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1615,180,0 chrVII 844261 . A C 2064 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.24;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2097,234,0 chrVII 844451 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.64;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1851,210,0 chrVII 844977 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.75;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1648,183,0 chrVII 844986 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=15.95;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1484,165,0 chrVII 845205 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.21;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1003,114,0 chrVII 845287 . A T 769 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.22;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:802,87,0 chrVII 845298 . G A 679 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=31.4808;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.97;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:712,78,0 chrVII 845584 . T G 790 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=18.81;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:823,93,0 chrVII 845605 . A G 448 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=14.93;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:481,54,0 chrVII 845612 . C T 304 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=11.69;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:36:337,36,0 chrVII 845614 . C A 280 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=11.20;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:313,33,0 chrVII 845632 . T A 409 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=14.10;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:48:442,48,0 chrVII 845738 . A T 1184 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.07;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1217,135,0 chrVII 845775 . T C 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.756;QD=20.39;ReadPosRankSum=1.683;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1501,168,0 chrVII 845801 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.41;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1564,177,0 chrVII 845834 . C A 1531 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.41;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1564,168,0 chrVII 845918 . A C 675 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.07;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:78:708,78,0 chrVII 846025 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.63;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1730,189,0 chrVII 846304 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.76;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1515,171,0 chrVII 846377 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.0366;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=20.53;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1778,198,0 chrVII 846529 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.02;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:916,99,0 chrVII 846611 . T G 587 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=14.67;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:40:72:620,72,0 chrVII 846613 . A C 588 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=15.47;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:72:621,72,0 chrVII 846634 . A G 493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.444;QD=13.69;ReadPosRankSum=1.636;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:60:526,60,0 chrVII 846696 . T C 481 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;QD=11.45;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:514,57,0 chrVII 846715 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=15.77;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:932,102,0 chrVII 846724 . A G 943 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=15.98;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:976,111,0 chrVII 846740 . A T 932 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;MQRankSum=0.299;QD=16.07;ReadPosRankSum=1.673;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:965,105,0 chrVII 846741 . A G 908 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=15.93;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:941,105,0 chrVII 846746 . C T 921 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=16.16;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:954,102,0 chrVII 846750 . G A 822 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=15.51;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:855,93,0 chrVII 846917 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.36;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:929,99,0 chrVII 846930 . T C 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=0.201;QD=18.74;ReadPosRankSum=1.652;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:93:839,93,0 chrVII 846945 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.94;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:923,102,0 chrVII 846990 . A G 750 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.86;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:783,87,0 chrVII 847197 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.08;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2042,225,0 chrVII 847338 . T A 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.962;QD=23.42;ReadPosRankSum=1.636;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1743,189,0 chrVII 847512 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=12.2216;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.959;QD=18.84;ReadPosRankSum=1.698;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1974,231,0 chrVII 848688 . A G 2593 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2626,300,0 chrVII 849134 . C G 2527 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.42;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2560,291,0 chrVII 849416 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.75;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1477,156,0 chrVII 849423 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=16.64;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1298,144,0 chrVII 849504 . A G 1364 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.21;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1397,156,0 chrVII 849524 . G C 1396 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.12;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1429,159,0 chrVII 849571 . C G 1632 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.20;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1665,186,0 chrVII 849971 . G C 1565 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.5376;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.56;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1598,183,0 chrVII 850236 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.55;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1800,201,0 chrVII 850247 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.41;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1512,171,0 chrVII 850524 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.08;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1389,156,0 chrVII 850549 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.78;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1420,162,0 chrVII 850641 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.89;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1237,138,0 chrVII 850793 . A G 589 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=35.5582;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=13.39;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:622,72,0 chrVII 850886 . C T 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=67;Dels=0.00;FS=4.281;HaplotypeScore=5.1420;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;MQRankSum=-1.112;QD=13.30;ReadPosRankSum=1.681;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:924,99,0 chrVII 851801 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.164;QD=19.59;ReadPosRankSum=1.675;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1228,141,0 chrVII 851889 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.91;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1014,114,0 chrVII 851923 . C A 1084 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.69;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1117,123,0 chrVII 851980 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.41;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1101,120,0 chrVII 851981 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.55;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1109,120,0 chrVII 852002 . A G 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=-0.247;QD=16.33;ReadPosRankSum=1.677;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1062,120,0 chrVII 852722 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.2562;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.07;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1074,117,0 chrVII 852779 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.87;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1464,156,0 chrVII 852979 . T A 1564 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.00;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1597,171,0 chrVII 853006 . T A 1264 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.41;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1297,141,0 chrVII 853120 . T C 1049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.069;QD=20.98;ReadPosRankSum=1.663;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1082,120,0 chrVII 853183 . G T 1061 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.29;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1094,120,0 chrVII 853252 . G T 1360 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.38;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1393,153,0 chrVII 853807 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.63;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1151,132,0 chrVII 853975 . T A 1735 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.01;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1768,192,0 chrVII 854209 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1872,210,0 chrVII 854362 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.73;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2163,246,0 chrVII 854575 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.458;QD=16.91;ReadPosRankSum=0.139;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1504,171,0 chrVII 854729 . G A 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.048;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.9073;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.492;QD=19.11;ReadPosRankSum=-1.304;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1638,154,0 chrVII 854779 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.23;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2056,225,0 chrVII 854830 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.45;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1952,219,0 chrVII 854998 . A G 768 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=17.45;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:801,90,0 chrVII 855031 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=16.2528;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=16.56;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:78:745,78,0 chrVII 855163 . T C 616 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.87;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:72:649,72,0 chrVII 855164 . T C 600 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.35;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:72:633,72,0 chrVII 857340 . G C 1079 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.36;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1112,123,0 chrVII 857541 . T A 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.015;DP=88;Dels=0.00;FS=5.416;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.100;QD=20.09;ReadPosRankSum=1.692;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1801,172,0 chrVII 858054 . T G 1450 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.12;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1483,168,0 chrVII 858060 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=18.51;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1384,147,0 chrVII 858511 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.79;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2150,231,0 chrVII 858547 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.31;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2023,219,0 chrVII 858659 . A T 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=89.7079;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.397;QD=19.36;ReadPosRankSum=1.588;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1911,204,0 chrVII 858672 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=0.34;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:9:73,9,0 chrVII 859603 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.19;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1177,129,0 chrVII 859646 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.12;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1048,117,0 chrVII 860072 . T G 1087 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1120,123,0 chrVII 860141 . G A 970 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.80;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1003,108,0 chrVII 860195 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.50;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1149,126,0 chrVII 860213 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=14.99;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1262,144,0 chrVII 860276 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=16.85;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1533,162,0 chrVII 860663 . T C 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.694;QD=21.48;ReadPosRankSum=1.694;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1988,225,0 chrVII 860945 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.77;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1516,168,0 chrVII 861074 . G C 2076 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.57;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2109,237,0 chrVII 861407 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.78;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1392,156,0 chrVII 861419 . T G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.112;DP=73;Dels=0.00;FS=10.560;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=-0.253;QD=15.73;ReadPosRankSum=2.382;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1181,132,0 chrVII 861437 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=15.94;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1053,114,0 chrVII 861578 . T C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.431;QD=21.48;ReadPosRankSum=1.682;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1515,171,0 chrVII 861857 . A G 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;DP=116;Dels=0.00;FS=3.087;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.216;QD=21.27;ReadPosRankSum=-1.003;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,113:116:99:2500,258,0 chrVII 861908 . T C 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.142;QD=20.61;ReadPosRankSum=1.658;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1991,225,0 chrVII 862103 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.32;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1517,171,0 chrVII 862199 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;DP=100;Dels=0.00;FS=3.047;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.169;QD=18.60;ReadPosRankSum=0.628;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1893,191,0 chrVII 862466 . A G 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.3650;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.696;QD=20.01;ReadPosRankSum=1.696;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1994,225,0 chrVII 862549 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.99;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2132,237,0 chrVII 862853 . C A 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.955;HaplotypeScore=4.4117;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.493;QD=16.05;ReadPosRankSum=1.334;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1429,156,0 chrVII 862855 . A G 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=3.4223;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.414;QD=15.56;ReadPosRankSum=1.613;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1387,156,0 chrVII 862868 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=15.73;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1433,162,0 chrVII 862964 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.72;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1709,183,0 chrVII 863057 . G A 3491.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.52;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3491,384,0 chrVII 863063 . T C 3296.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.99;SB=-1.867e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3296,381,0 chrVII 863114 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.52;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2241,243,0 chrVII 863789 . T A 1797 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.79;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1830,204,0 chrVII 863849 . T C 2807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=135;Dels=0.00;FS=2.586;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.425;QD=20.79;ReadPosRankSum=2.903;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2840,324,0 chrVII 864132 . T C 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=4.500;HaplotypeScore=6.6122;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.689;QD=17.37;ReadPosRankSum=1.658;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,92:96:99:1701,195,0 chrVII 864602 . T C 2759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=136;Dels=0.00;FS=7.534;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.428;QD=20.29;ReadPosRankSum=2.413;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:2,133:136:99:2792,318,0 chrVII 865628 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.41;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2140,234,0 chrVII 866222 . T A 571 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.30;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:604,66,0 chrVII 868401 . A C 1652 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.76;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1685,189,0 chrVII 868402 . A C 1630 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.53;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1663,186,0 chrVII 868409 . C A 1557 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.05;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1590,171,0 chrVII 868460 . T C 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.490;QD=15.01;ReadPosRankSum=2.282;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1354,153,0 chrVII 868485 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.24;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1784,195,0 chrVII 869330 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.567;QD=17.42;ReadPosRankSum=1.701;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1949,222,0 chrVII 870131 . C T 298 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.068;DP=116;Dels=0.01;FS=2.381;HaplotypeScore=108.6279;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.918;QD=2.57;ReadPosRankSum=-4.210;SB=3.00 GT:AD:DP:GQ:PL 1/1:98,16:115:36:331,36,0 chrVII 870325 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.02;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1889,201,0 chrVII 870646 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3752;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.52;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1718,192,0 chrVII 871157 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1013,108,0 chrVII 871517 . T C 1087 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.63;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1120,123,0 chrVII 871670 . G T 581 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.75;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:614,66,0 chrVII 873201 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.73;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1007,108,0 chrVII 873389 . T C 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=3.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.132;QD=18.81;ReadPosRankSum=2.345;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:917,102,0 chrVII 873392 . G A 877 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.54;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:910,102,0 chrVII 873682 . C A 2160 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.23;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2193,240,0 chrVII 873790 . C T 2132 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.68;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2165,237,0 chrVII 873895 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.42;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1179,126,0 chrVII 874013 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=14.86;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1207,129,0 chrVII 874420 . T C 850 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.25;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:883,102,0 chrVII 874466 . A T 696 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.40;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:729,78,0 chrVII 874608 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.34;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1036,111,0 chrVII 874653 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.28;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1128,123,0 chrVII 875194 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=14.3769;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.84;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2176,240,0 chrVII 875517 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.43;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1361,156,0 chrVII 875660 . T C 2874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.557;DP=130;Dels=0.00;FS=2.402;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=2.730;QD=22.11;ReadPosRankSum=3.391;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2907,333,0 chrVII 875675 . T C 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.266;QD=20.93;ReadPosRankSum=2.413;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:2,131:134:99:2838,324,0 chrVII 875843 . T G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=13.2652;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.483;QD=19.85;ReadPosRankSum=1.571;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1740,198,0 chrVII 875845 . A T 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.731;HaplotypeScore=13.2652;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-1.488;QD=22.14;ReadPosRankSum=1.691;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1915,207,0 chrVII 876033 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=23.83;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2392,252,0 chrVII 876057 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=20.16;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1948,225,0 chrVII 876081 . G A 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.635;QD=21.48;ReadPosRankSum=-0.566;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2224,240,0 chrVII 876351 . T C 533 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=19.04;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:63:566,63,0 chrVII 876359 . T C 460 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=17.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:26:57:493,57,0 chrVII 876387 . T C 600 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:633,72,0 chrVII 876560 . C T 394 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=18.76;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:427,45,0 chrVII 876569 . G A 260 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=12.38;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:293,33,0 chrVII 876711 . T C 1714 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.546;QD=22.85;ReadPosRankSum=1.685;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1747,201,0 chrVII 876825 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.67;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1650,180,0 chrVII 876915 . A G 1882 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.52;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1915,210,0 chrVII 876960 . T A 1870 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.89;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1903,207,0 chrVII 876965 . T C 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=86;Dels=0.00;FS=19.377;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.512;QD=17.60;ReadPosRankSum=2.917;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:3,82:86:99:1547,174,0 chrVII 876991 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.10;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1924,210,0 chrVII 877174 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.78;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1615,183,0 chrVII 878193 . G A 2846 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.36;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2879,318,0 chrVII 878256 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.92;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2577,276,0 chrVII 878298 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.48;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2217,243,0 chrVII 878834 . T C 584 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=19.47;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:617,69,0 chrVII 878835 . A T 610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-1.733;QD=20.33;ReadPosRankSum=1.617;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:69:643,69,0 chrVII 878909 . C T 184.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=9.20;SB=-2.904e+01 GT:AD:DP:GQ:PL 1/1:0,13:20:24:217,24,0 chrVII 878958 . G T 893 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=11.60;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:926,102,0 chrVII 879079 . A G 1599 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.51;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1632,186,0 chrVII 879340 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.58;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2381,264,0 chrVII 879438 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.46;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1920,213,0 chrVII 879516 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.45;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1234,135,0 chrVII 879875 . T C 1023 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.88;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1056,120,0 chrVII 880297 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.25;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1274,138,0 chrVII 880304 . A G 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=3.222;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.192;QD=17.80;ReadPosRankSum=1.622;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1190,132,0 chrVII 880384 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.04;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1830,195,0 chrVII 880494 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1389,150,0 chrVII 880548 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.84;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1426,156,0 chrVII 881583 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.90;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1914,207,0 chrVII 881739 . A T 1570 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.81;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1603,174,0 chrVII 881946 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.51;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1736,195,0 chrVII 882242 . A T 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.000;QD=21.67;ReadPosRankSum=1.680;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1463,156,0 chrVII 882533 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4924;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.74;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:778,87,0 chrVII 882628 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=22.72;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:851,90,0 chrVII 882635 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=20.17;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:759,81,0 chrVII 882679 . G C 931 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.93;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:964,102,0 chrVII 882683 . A G 852 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=15.78;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:885,102,0 chrVII 884168 . C G 1800 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3465;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.00;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1833,207,0 chrVII 884309 . G C 1196 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.61;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1229,138,0 chrVII 884326 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.97;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,159,0 chrVII 885001 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.86;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2000,213,0 chrVII 885165 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.50;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2097,231,0 chrVII 885274 . T G 1300 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9499;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.67;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1333,153,0 chrVII 885547 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.89;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1485,162,0 chrVII 885746 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.32;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1366,150,0 chrVII 885775 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=58;Dels=0.00;FS=3.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.490;QD=19.83;ReadPosRankSum=2.365;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1183,135,0 chrVII 886023 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.44;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1452,162,0 chrVII 886106 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.74;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1215,129,0 chrVII 886445 . A G 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=3.252;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.983;QD=19.52;ReadPosRankSum=1.685;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1497,171,0 chrVII 886817 . A T 1597 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1630,177,0 chrVII 886898 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1591,177,0 chrVII 886948 . G T 1369 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.74;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1402,150,0 chrVII 887135 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1570,177,0 chrVII 887666 . G T 1318 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4329;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.92;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1351,144,0 chrVII 887698 . G T 1091 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.39;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1124,123,0 chrVII 888356 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:84:748,84,0 chrVII 891078 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.35;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1976,216,0 chrVII 891152 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.4759;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=16.54;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2068,234,0 chrVII 891221 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.2608;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.157;QD=17.68;ReadPosRankSum=1.701;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:1996,225,0 chrVII 891231 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.09;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2084,234,0 chrVII 891342 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.37;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2234,237,0 chrVII 891371 . T C 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.340;QD=16.97;ReadPosRankSum=1.700;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,106:110:99:1900,210,0 chrVII 891383 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.74;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2038,216,0 chrVII 891431 . A C 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.254;QD=17.36;ReadPosRankSum=-0.776;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1561,180,0 chrVII 891990 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=2.957;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=20.79;ReadPosRankSum=2.352;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2133,243,0 chrVII 894066 . A T 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.11;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,159,0 chrVII 894078 . T A 1225 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.14;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1258,138,0 chrVII 894905 . G A 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=122;Dels=0.00;FS=5.950;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.596;QD=20.70;ReadPosRankSum=1.107;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2558,261,0 chrVII 895096 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.14;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1492,168,0 chrVII 895751 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.64;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1721,192,0 chrVII 897236 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=15.6956;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.20;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2337,261,0 chrVII 897531 . A G 2136 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.80;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2169,249,0 chrVII 897580 . C T 2595 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.60;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2628,282,0 chrVII 897636 . A G 2816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=2.900;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.605;QD=21.33;ReadPosRankSum=2.375;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2849,324,0 chrVII 897659 . A T 2530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.992;QD=21.62;ReadPosRankSum=1.554;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2563,285,0 chrVII 897687 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.07;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1920,216,0 chrVII 897749 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=19.91;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1865,213,0 chrVII 897868 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.4636;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.41;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2033,225,0 chrVII 897999 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.02;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2144,243,0 chrVII 898026 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=15.84;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1744,186,0 chrVII 898029 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=12.31;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1523,168,0 chrVII 898038 . T C 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-0.978;QD=10.74;ReadPosRankSum=1.648;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:1365,159,0 chrVII 898059 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=12.03;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1429,153,0 chrVII 898083 . T C 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=-0.549;QD=10.85;ReadPosRankSum=1.704;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1367,156,0 chrVII 898092 . C G 1380 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=11.22;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1413,162,0 chrVII 898107 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=12.47;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1530,168,0 chrVII 899421 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.25;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1657,189,0 chrVII 899490 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.91;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1748,198,0 chrVII 899751 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7575;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.30;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1244,135,0 chrVII 899755 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=16.43;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1150,126,0 chrVII 899837 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=12.20;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1155,135,0 chrVII 899896 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.00;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2049,219,0 chrVII 900038 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.97;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1505,162,0 chrVII 900087 . C T 1085 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.04;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:57:99:1118,120,0 chrVII 900146 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.72;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:894,102,0 chrVII 900753 . C A 2179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=107;Dels=0.00;FS=5.160;HaplotypeScore=6.6648;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.600;QD=20.36;ReadPosRankSum=0.874;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2212,243,0 chrVII 901731 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.69;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1569,180,0 chrVII 902287 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.88;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1411,153,0 chrVII 902486 . C T 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.102;QD=20.43;ReadPosRankSum=-0.346;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1177,126,0 chrVII 902502 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.10;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:974,111,0 chrVII 902940 . G T 2828 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.81;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2861,303,0 chrVII 903030 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.68;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1384,156,0 chrVII 903039 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=15.39;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1326,141,0 chrVII 903048 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=13.79;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1205,132,0 chrVII 903061 . C T 940 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=11.19;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:973,105,0 chrVII 903078 . A G 763 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=11.39;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:87:796,87,0 chrVII 903129 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.11;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1319,144,0 chrVII 903216 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.42;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2197,243,0 chrVII 903291 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.9980;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.538;QD=16.75;ReadPosRankSum=2.402;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:1792,207,0 chrVII 903336 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.50;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2042,225,0 chrVII 903582 . T G 853 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.77;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:886,102,0 chrVII 903621 . A G 982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=54;Dels=0.00;FS=3.087;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.664;QD=18.19;ReadPosRankSum=2.359;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1015,117,0 chrVII 903660 . T C 1038 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.09;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1071,123,0 chrVII 904076 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9276;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.16;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1739,195,0 chrVII 904249 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.32;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1632,174,0 chrVII 904491 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.34;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1225,138,0 chrVII 904632 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.22;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1022,111,0 chrVII 904835 . T G 1136 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.9649;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.25;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1169,132,0 chrVII 905027 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.06;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1676,186,0 chrVII 905084 . T C 851 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=12.51;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:884,99,0 chrVII 905093 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=12.46;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:843,96,0 chrVII 905103 . C T 616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=2.783;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.994;QD=9.48;ReadPosRankSum=2.070;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:72:649,72,0 chrVII 905104 . T C 596 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=9.17;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:629,72,0 chrVII 905148 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.38;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1076,114,0 chrVII 905266 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=7.424;HaplotypeScore=8.5802;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-0.149;QD=17.78;ReadPosRankSum=2.396;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1651,186,0 chrVII 905275 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7711;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.31;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1643,186,0 chrVII 905510 . T C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-1.180;QD=18.45;ReadPosRankSum=1.682;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,68:73:99:1380,156,0 chrVII 905665 . A G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-1.312;QD=11.19;ReadPosRankSum=1.680;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,67:68:90:794,90,0 chrVII 905694 . C T 603 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=9.73;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:72:636,72,0 chrVII 905710 . T G 556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=6.917;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-0.264;QD=9.42;ReadPosRankSum=1.674;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:66:589,66,0 chrVII 906110 . T C 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=3.895;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.368;QD=19.18;ReadPosRankSum=1.231;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1491,152,0 chrVII 906305 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.12;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2194,243,0 chrVII 906509 . T G 1505 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=15.84;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1538,174,0 chrVII 906524 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4354;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=15.73;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1480,168,0 chrVII 906758 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=9.3891;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.214;QD=20.66;ReadPosRankSum=1.615;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1872,213,0 chrVII 906984 . C T 3068 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.35;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3101,330,0 chrVII 907178 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.6108;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.31;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2075,237,0 chrVII 907598 . T C 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.816;QD=19.70;ReadPosRankSum=0.697;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1767,201,0 chrVII 907799 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.05;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1671,183,0 chrVII 907907 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.34;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1911,204,0 chrVII 907937 . A C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.652;QD=17.51;ReadPosRankSum=1.642;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1381,156,0 chrVII 908162 . C A 1742 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.36;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1775,201,0 chrVII 908833 . G A 3093 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.04;FS=0.000;HaplotypeScore=18.9109;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.09;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3126,333,0 chrVII 909620 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1663,189,0 chrVII 909722 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.47;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1527,168,0 chrVII 909752 . G T 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.319;QD=20.87;ReadPosRankSum=1.000;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1807,192,0 chrVII 910249 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=36.7273;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.83;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:928,102,0 chrVII 910289 . C T 774 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.19;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:807,87,0 chrVII 910647 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.17;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1075,120,0 chrVII 910689 . A G 969 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.78;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1002,114,0 chrVII 911599 . T C 1070 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1103,126,0 chrVII 911703 . G C 667 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.88;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:700,81,0 chrVII 911975 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.88;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1327,144,0 chrVII 912151 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.75;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1686,180,0 chrVII 912377 . C T 2386 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.39;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2419,270,0 chrVII 912779 . T C 2940 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.00;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2973,330,0 chrVII 913000 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=72;Dels=0.00;FS=8.500;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.790;QD=18.24;ReadPosRankSum=2.346;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1346,153,0 chrVII 913222 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7548;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.14;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1720,189,0 chrVII 914087 . T C 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.6868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.736;QD=22.08;ReadPosRankSum=1.685;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1689,189,0 chrVII 914991 . C T 426 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=10.92;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:459,51,0 chrVII 915057 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=14.52;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1035,111,0 chrVII 916182 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.10;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1418,159,0 chrVII 916575 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.66;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1451,168,0 chrVII 916953 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.03;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1668,186,0 chrVII 917004 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.67;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1420,150,0 chrVII 917241 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.62;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:916,99,0 chrVII 917245 . A T 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=56;Dels=0.00;FS=3.602;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.850;QD=15.79;ReadPosRankSum=1.606;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:917,102,0 chrVII 917290 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.64;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1519,165,0 chrVII 917381 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.65;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1375,153,0 chrVII 917454 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.30;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1396,159,0 chrVII 917985 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1075,120,0 chrVII 918053 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.50;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1452,165,0 chrVII 918091 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.37;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1778,189,0 chrVII 918194 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.34;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1947,213,0 chrVII 918242 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.37;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1357,153,0 chrVII 918497 . A C 1344 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.80;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:80:99:1377,159,0 chrVII 918518 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0935;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.07;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1569,174,0 chrVII 918731 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.55;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2035,222,0 chrVII 918808 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=6.790;HaplotypeScore=10.9992;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.789;QD=20.10;ReadPosRankSum=2.367;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1822,207,0 chrVII 918846 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.39;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1449,162,0 chrVII 918902 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=83;Dels=0.00;FS=12.819;HaplotypeScore=11.3716;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.001;QD=18.42;ReadPosRankSum=3.046;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:4,78:83:99:1562,174,0 chrVII 918971 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.26;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2382,264,0 chrVII 919258 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2356,267,0 chrVII 919382 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.54;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1245,141,0 chrVII 919531 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=20.24;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2178,237,0 chrVII 920149 . A C 1805 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.84;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1838,204,0 chrVII 920382 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.63;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1979,210,0 chrVII 920764 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.52;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1305,141,0 chrVII 921308 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.97;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1505,162,0 chrVII 921968 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.85;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1226,138,0 chrVII 922006 . G A 934 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:99:967,105,0 chrVII 922091 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.12;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:823,87,0 chrVII 922106 . A T 1095 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.59;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1128,123,0 chrVII 922161 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.55;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1349,150,0 chrVII 922888 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.78;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1971,222,0 chrVII 923851 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.57;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1651,180,0 chrVII 923921 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=12.518;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.013;QD=20.98;ReadPosRankSum=2.890;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1753,198,0 chrVII 924796 . G C 1554 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1587,177,0 chrVII 924899 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.241;QD=22.52;ReadPosRankSum=1.688;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1835,204,0 chrVII 925190 . G T 1620 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.06;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1653,180,0 chrVII 925313 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.88;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1750,183,0 chrVII 926236 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.64;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1483,165,0 chrVII 926465 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=55;Dels=0.00;FS=6.274;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.844;QD=18.98;ReadPosRankSum=2.357;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,51:55:99:1077,123,0 chrVII 926609 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1342,150,0 chrVII 927088 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8135;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.35;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1126,126,0 chrVII 927149 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.85;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1180,132,0 chrVII 927158 . A G 1170 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.53;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1203,135,0 chrVII 927284 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=18.63;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:983,114,0 chrVII 927341 . T A 1034 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.27;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1067,114,0 chrVII 927609 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.56;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:917,102,0 chrVII 927650 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:913,105,0 chrVII 927723 . C A 1286 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1319,141,0 chrVII 927992 . G C 1002 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.22;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1035,117,0 chrVII 928933 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.94;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1520,165,0 chrVII 929033 . A C 787 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:820,93,0 chrVII 929327 . A C 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=60;Dels=0.00;FS=4.058;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.433;QD=19.10;ReadPosRankSum=1.670;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,55:60:99:1179,135,0 chrVII 929519 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1429,156,0 chrVII 930105 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.33;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1910,210,0 chrVII 930476 . C T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.1722;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.12;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:3328,360,0 chrVII 930575 . C T 2000 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.47;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2033,225,0 chrVII 930638 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.06;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1465,168,0 chrVII 930769 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=17.57;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2265,258,0 chrVII 930826 . G A 3598.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.81;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3598,387,0 chrVII 930881 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.65;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:95:99:1805,204,0 chrVII 930912 . T G 830 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=20.24;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:863,96,0 chrVII 930939 . A C 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.883;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=19.5994;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-0.036;QD=21.51;ReadPosRankSum=2.239;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:90:786,90,0 chrVII 931044 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=21.00;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1041,111,0 chrVII 931052 . G T 965 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=19.30;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:998,111,0 chrVII 931123 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.3340;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=21.39;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1252,141,0 chrVII 931166 . A C 445 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=21.19;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:54:478,54,0 chrVII 931461 . G T 42.07 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=8;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=3;MQRankSum=0.358;QD=5.26;ReadPosRankSum=-1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:2,6:8:15:72,0,15 chrVII 931491 . T G 76.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=3;QD=9.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:109,12,0 chrVII 931545 . T C 11.44 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.4838;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=2;MQRankSum=-1.668;QD=0.95;ReadPosRankSum=-0.470;SB=-5.390e+01 GT:AD:DP:GQ:PL 0/1:6,5:12:13:41,0,13 chrVII 931551 . T G 67.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=1;QD=5.63;SB=-1.083e+02 GT:AD:DP:GQ:PL 1/1:1,11:12:12:100,12,0 chrVII 931595 . C T 262 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=13.79;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:295,33,0 chrVII 931627 . T A 273 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=15.17;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:306,33,0 chrVII 932056 . A G 233 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=6.85;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:30:266,30,0 chrVII 932057 . A G 208.01 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=6.12;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:241,27,0 chrVII 932191 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=22.55;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1724,180,0 chrVII 932340 . T C 658 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=14.95;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:691,78,0 chrVII 932498 . T C 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=6.464;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.226;QD=21.49;ReadPosRankSum=2.381;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1559,177,0 chrVII 932723 . T C 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.615;QD=19.84;ReadPosRankSum=1.565;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1263,138,0 chrVII 933365 . T C 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.764;QD=22.02;ReadPosRankSum=2.345;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:2,45:48:99:1090,123,0 chrVII 933512 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.55;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1776,198,0 chrVII 933869 . G T 2343 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.90;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2376,258,0 chrVII 934214 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.82;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1653,177,0 chrVII 934463 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.16;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1451,156,0 chrVII 934466 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.76;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1337,150,0 chrVII 934697 . A T 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=99;Dels=0.00;FS=9.113;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.927;QD=16.21;ReadPosRankSum=2.400;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1638,180,0 chrVII 934700 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.68;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1618,174,0 chrVII 934919 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.35;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2574,282,0 chrVII 935851 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=16.72;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1237,132,0 chrVII 935861 . T A 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=78;Dels=0.00;FS=6.193;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.329;QD=15.01;ReadPosRankSum=2.804;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1204,132,0 chrVII 936030 . G A 2412 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.73;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2445,267,0 chrVII 936350 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.42;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2095,240,0 chrVII 936368 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.01;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2323,255,0 chrVII 936413 . G C 1581 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.97;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1614,186,0 chrVII 936948 . G C 1364 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.49;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1397,159,0 chrVII 937221 . T C 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.722;QD=19.45;ReadPosRankSum=1.155;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1900,213,0 chrVII 937295 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.43;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1831,204,0 chrVII 937376 . T G 2265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=107;Dels=0.00;FS=9.410;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.191;QD=21.17;ReadPosRankSum=2.743;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:3,103:107:99:2298,258,0 chrVII 937670 . G A 1245 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.31;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1278,144,0 chrVII 937718 . G C 1635 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.01;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1668,192,0 chrVII 937780 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=89;Dels=0.00;FS=6.389;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;MQRankSum=-0.739;QD=17.94;ReadPosRankSum=2.334;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:2,83:89:99:1630,183,0 chrVII 937797 . G T 1814 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.38;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1847,201,0 chrVII 937835 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.62;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1496,168,0 chrVII 937838 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.26;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1483,162,0 chrVII 937863 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.047;QD=15.87;ReadPosRankSum=1.696;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1557,174,0 chrVII 938120 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=97;Dels=0.00;FS=3.010;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.443;QD=20.30;ReadPosRankSum=1.696;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2002,222,0 chrVII 938241 . T C 2314 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.61;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2347,264,0 chrVII 938447 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.04;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2326,261,0 chrVII 938528 . C A 2079 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.58;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2112,231,0 chrVII 938768 . A C 1842 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.81;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1875,213,0 chrVII 938789 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.49;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1787,201,0 chrVII 939184 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.45;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1675,186,0 chrVII 939208 . G T 1282 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.56;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1315,141,0 chrVII 939212 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=15.76;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1231,135,0 chrVII 939290 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=18.42;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1580,180,0 chrVII 939318 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.07;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1908,213,0 chrVII 939358 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.38;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2214,252,0 chrVII 939675 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.97;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1304,147,0 chrVII 939713 . A G 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=71;Dels=0.00;FS=8.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;MQRankSum=-2.138;QD=11.32;ReadPosRankSum=3.327;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:4,66:71:96:837,96,0 chrVII 939718 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=12.49;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:957,105,0 chrVII 939793 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=61.7877;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.00;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1275,147,0 chrVII 940048 . G C 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.94;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1499,168,0 chrVII 940082 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.45;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1383,147,0 chrVII 940087 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.72;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1238,141,0 chrVII 940459 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.70;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1985,213,0 chrVII 940468 . C G 1651 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5969;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.42;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1684,195,0 chrVII 940932 . A C 2015 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.16;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2048,237,0 chrVII 941028 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.33;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1493,165,0 chrVII 942434 . G T 1531 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.88;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1564,171,0 chrVII 942771 . C T 3548.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.2149;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.30;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3548,393,0 chrVII 942850 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.07;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2478,267,0 chrVII 943288 . T C 3039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=135;Dels=0.00;FS=2.391;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.526;QD=22.51;ReadPosRankSum=3.380;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:4,131:135:99:3072,345,0 chrVII 943570 . C T 3221.02 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.21;SB=-1.858e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3254,366,0 chrVII 943613 . G A 2759 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.29;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2792,309,0 chrVII 943671 . C T 2809 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.22;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2842,309,0 chrVII 943708 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.45;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2612,282,0 chrVII 943786 . T C 1967 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0595;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.15;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2000,228,0 chrVII 943810 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.92;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2225,240,0 chrVII 943831 . G T 2108 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.29;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2141,231,0 chrVII 943873 . T C 2774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.055;QD=20.86;ReadPosRankSum=1.706;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2807,315,0 chrVII 944106 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.8854;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.58;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1897,201,0 chrVII 944183 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.35;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1831,204,0 chrVII 944287 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.12;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2026,225,0 chrVII 944466 . C A 1621 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.26;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1654,177,0 chrVII 944554 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.38;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1551,177,0 chrVII 944684 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.66;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1066,117,0 chrVII 944981 . T A 689 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=17.67;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:722,78,0 chrVII 945026 . A G 977 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.79;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1010,114,0 chrVII 945166 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.00;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1761,192,0 chrVII 945207 . G T 1473 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.15;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1506,165,0 chrVII 945737 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6898;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.49;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1258,132,0 chrVII 945744 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5039;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.39;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1274,144,0 chrVII 945936 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.66;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1563,174,0 chrVII 945978 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.08;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1733,186,0 chrVII 946206 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.49;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1180,135,0 chrVII 946366 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.27;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1382,147,0 chrVII 946369 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.85;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1247,132,0 chrVII 946664 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.53;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2829,315,0 chrVII 946974 . A G 3053 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.5361;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.96;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3086,348,0 chrVII 947080 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=95;Dels=0.00;FS=15.504;HaplotypeScore=12.4642;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.402;QD=18.56;ReadPosRankSum=2.925;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:3,90:95:99:1796,201,0 chrVII 947252 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.49;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1585,168,0 chrVII 947600 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1436,165,0 chrVII 947710 . C T 1010 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.44;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1043,114,0 chrVII 947810 . C G 2235 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.70;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2268,255,0 chrVII 948145 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.44;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2308,249,0 chrVII 948191 . T G 1647 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.51;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1680,192,0 chrVII 948202 . T G 1554 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.50;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1587,180,0 chrVII 948628 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=21.50;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2334,255,0 chrVII 948634 . C T 2280 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.31;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2313,252,0 chrVII 949009 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.90;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1250,144,0 chrVII 949014 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=18.50;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:1,59:64:99:1217,135,0 chrVII 949029 . C A 1169 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.16;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1202,129,0 chrVII 949072 . C T 371 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:45:404,45,0 chrVII 949264 . T C 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=17;Dels=0.00;FS=28.543;HaplotypeScore=4.5374;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=0.872;QD=2.65;ReadPosRankSum=0.428;SB=0.199 GT:AD:DP:GQ:PL 0/1:7,8:17:25:75,0,25 chrVII 949572 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.17;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1260,141,0 chrVII 949577 . C G 1070 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.14;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1103,126,0 chrVII 950348 . T A 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.762;QD=18.29;ReadPosRankSum=1.697;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1899,213,0 chrVII 950351 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.93;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1844,198,0 chrVII 950426 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.41;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1686,186,0 chrVII 950495 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.00;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1942,219,0 chrVII 950699 . C A 1908 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.87;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1941,210,0 chrVII 950759 . G A 2169 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.1935;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.03;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2202,234,0 chrVII 950926 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1939,216,0 chrVII 951520 . T C 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.062;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.801;QD=21.12;ReadPosRankSum=2.256;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1110,126,0 chrVII 951635 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.58;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1011,111,0 chrVII 951655 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=16.11;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1064,114,0 chrVII 951659 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=14.93;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1063,117,0 chrVII 951675 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=12.46;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:868,99,0 chrVII 951690 . G A 711 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=12.47;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:81:744,81,0 chrVII 951703 . A G 614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;MQRankSum=-1.092;QD=12.04;ReadPosRankSum=2.354;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:72:647,72,0 chrVII 951706 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=12.04;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:623,66,0 chrVII 951726 . C T 446 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.92;MQ0=0;QD=8.75;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:51:479,51,0 chrVII 951733 . A T 486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=3.072;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=0.800;QD=10.12;ReadPosRankSum=2.348;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:54:519,54,0 chrVII 951745 . A G 434 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=9.64;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:467,54,0 chrVII 951766 . A G 632 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=12.15;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:665,75,0 chrVII 951773 . C T 698 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=13.96;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:78:731,78,0 chrVII 951824 . G A 470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;DP=40;Dels=0.00;FS=6.226;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=-0.873;QD=11.75;ReadPosRankSum=1.130;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:57:503,57,0 chrVII 951825 . A G 481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=40;Dels=0.00;FS=3.129;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;MQRankSum=-0.983;QD=12.02;ReadPosRankSum=1.639;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,36:40:60:514,60,0 chrVII 951835 . A T 491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DP=47;Dels=0.02;FS=3.108;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=1.643;QD=10.45;ReadPosRankSum=2.235;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:57:524,57,0 chrVII 951976 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.40;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1216,132,0 chrVII 952051 . T G 1983 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7933;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=23.61;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2016,228,0 chrVII 952076 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=23.43;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2235,249,0 chrVII 952223 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.76;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1778,201,0 chrVII 952422 . T C 2690 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.23;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2723,306,0 chrVII 952794 . A G 1970 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.41;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2003,231,0 chrVII 953020 . A G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.780;QD=17.67;ReadPosRankSum=1.694;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1641,183,0 chrVII 953031 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4930;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.65;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1618,177,0 chrVII 953343 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.271;QD=19.98;ReadPosRankSum=1.678;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1332,150,0 chrVII 953540 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.55;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1406,159,0 chrVII 953555 . T C 1368 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.77;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1401,159,0 chrVII 953629 . A C 1374 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.14;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1407,162,0 chrVII 953664 . G T 1779 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.70;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1812,198,0 chrVII 953718 . G T 1415 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=15.5415;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.65;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1448,159,0 chrVII 953755 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.18;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1345,147,0 chrVII 953864 . C G 1498 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.72;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1531,174,0 chrVII 953925 . G A 1192 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=15.09;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1225,135,0 chrVII 953929 . C G 1139 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=13.89;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1172,132,0 chrVII 953935 . T C 1156 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=14.82;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1189,138,0 chrVII 954043 . G A 1308 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.52;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1341,153,0 chrVII 954244 . T C 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=8.278;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.265;QD=22.34;ReadPosRankSum=2.322;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1753,192,0 chrVII 954301 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.07;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2417,276,0 chrVII 954455 . G C 1139 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.09;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1172,129,0 chrVII 954667 . C G 1782 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.47;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1815,201,0 chrVII 954701 . C T 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.676;QD=23.44;ReadPosRankSum=0.726;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1533,165,0 chrVII 954734 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.80;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1450,162,0 chrVII 955004 . T C 1157 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.66;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1190,135,0 chrVII 955260 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.24;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2279,240,0 chrVII 955379 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.13;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1468,159,0 chrVII 955387 . A G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=4.543;HaplotypeScore=2.7570;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.749;QD=17.82;ReadPosRankSum=1.685;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1352,153,0 chrVII 955481 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.96;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1812,192,0 chrVII 955499 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.654;QD=20.46;ReadPosRankSum=1.694;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1874,213,0 chrVII 955592 . A T 2071 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.92;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2104,228,0 chrVII 955631 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=105;Dels=0.00;FS=8.150;HaplotypeScore=16.5869;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.675;QD=20.74;ReadPosRankSum=2.355;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2211,252,0 chrVII 955670 . T C 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=110;Dels=0.00;FS=2.595;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.343;QD=21.68;ReadPosRankSum=2.880;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:2418,270,0 chrVII 955886 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1873,213,0 chrVII 955973 . T A 1920 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.01;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1953,219,0 chrVII 956057 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.80;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1510,168,0 chrVII 956065 . A G 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.043;QD=17.22;ReadPosRankSum=1.689;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1411,162,0 chrVII 956093 . A G 1660 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.30;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1693,192,0 chrVII 956597 . G C 1524 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.05;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1557,180,0 chrVII 957479 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1824,204,0 chrVII 958235 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.42;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1221,132,0 chrVII 958287 . A T 1802 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2080;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.52;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1835,201,0 chrVII 958479 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1835,210,0 chrVII 958516 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.82;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1511,168,0 chrVII 958592 . A G 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.501;DP=69;Dels=0.00;FS=11.764;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.551;QD=16.84;ReadPosRankSum=3.642;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:5,63:69:99:1195,135,0 chrVII 958623 . A C 1371 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1404,159,0 chrVII 958749 . C G 1806 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.7218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1839,204,0 chrVII 958930 . T G 981 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.24;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1014,117,0 chrVII 958955 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=15.08;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:802,87,0 chrVII 959305 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.91;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1479,159,0 chrVII 959381 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.11;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1647,183,0 chrVII 959584 . A C 540 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.42;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:63:573,63,0 chrVII 959587 . G C 549 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.71;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:63:582,63,0 chrVII 959945 . T C 928 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.7020;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.87;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:961,114,0 chrVII 959960 . G A 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=11.0710;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.34;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1000,105,0 chrVII 960018 . T C 639 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.38;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:78:672,78,0 chrVII 960362 . C A 1318 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.61;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1351,144,0 chrVII 960668 . T C 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.173;QD=19.82;ReadPosRankSum=1.675;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1242,138,0 chrVII 960867 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.64;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1981,213,0 chrVII 960936 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.60;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1977,225,0 chrVII 961037 . A G 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=60;Dels=0.00;FS=6.247;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.271;QD=18.05;ReadPosRankSum=2.815;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1116,126,0 chrVII 961107 . T A 1566 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=20.08;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1599,174,0 chrVII 961111 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.14;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1644,174,0 chrVII 961203 . A T 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=95;Dels=0.00;FS=3.058;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=-1.275;QD=19.17;ReadPosRankSum=1.694;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1854,204,0 chrVII 961217 . A G 1604 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=3.063;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.737;QD=19.33;ReadPosRankSum=2.391;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1637,186,0 chrVII 961219 . A G 1470 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=3.060;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-0.631;QD=17.50;ReadPosRankSum=2.333;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1503,177,0 chrVII 961220 . C A 1520 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.54;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1553,180,0 chrVII 961221 . C T 1598 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=19.49;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1631,186,0 chrVII 961278 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.45;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2114,240,0 chrVII 961359 . T G 1266 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.18;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1299,144,0 chrVII 961361 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.29;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1157,129,0 chrVII 961398 . T C 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.462;QD=15.41;ReadPosRankSum=1.687;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1235,138,0 chrVII 961462 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9466;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.18;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1985,216,0 chrVII 961585 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.78;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1420,156,0 chrVII 961597 . A C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.515;QD=16.49;ReadPosRankSum=1.638;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1336,156,0 chrVII 961627 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=15.93;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1419,159,0 chrVII 961690 . C G 1924 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.91;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1957,225,0 chrVII 961741 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=17.83;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1156,132,0 chrVII 961780 . G C 1114 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=14.66;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1147,129,0 chrVII 962062 . T A 1784 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.24;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1817,201,0 chrVII 962110 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.54;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2168,231,0 chrVII 962129 . A T 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.887;QD=24.02;ReadPosRankSum=-0.887;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2003,197,0 chrVII 962346 . A G 3031 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.05;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3064,339,0 chrVII 963268 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1814,192,0 chrVII 963538 . T C 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=3.651;HaplotypeScore=8.5090;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.460;QD=20.33;ReadPosRankSum=1.494;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,103:106:99:2188,252,0 chrVII 963897 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.78;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1313,147,0 chrVII 964040 . C G 1588 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1621,183,0 chrVII 964269 . T C 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.4963;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.605;QD=18.76;ReadPosRankSum=1.690;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1609,186,0 chrVII 964575 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1929,213,0 chrVII 964750 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.5866;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.21;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2493,276,0 chrVII 964879 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.48;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1160,132,0 chrVII 964977 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.22;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1590,177,0 chrVII 965050 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.71;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2052,225,0 chrVII 965476 . A T 1014 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.13;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1047,114,0 chrVII 965676 . T G 941 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.60;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:974,108,0 chrVII 965888 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1034,117,0 chrVII 965972 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.93;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1252,144,0 chrVII 966466 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.13;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1764,198,0 chrVII 966609 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.76;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1148,123,0 chrVII 966950 . G C 669 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.58;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:702,78,0 chrVII 967106 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.41;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1024,114,0 chrVII 967359 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.02;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2260,246,0 chrVII 967484 . A G 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=5.156;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.499;QD=16.50;ReadPosRankSum=1.674;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1023,117,0 chrVII 967488 . T G 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=0.490;QD=16.26;ReadPosRankSum=1.667;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:895,102,0 chrVII 967708 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.47;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1603,171,0 chrVII 967722 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.99;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1742,189,0 chrVII 968214 . A G 2509 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.60;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2542,288,0 chrVII 968274 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.07;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1117,126,0 chrVII 968343 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.42;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1415,150,0 chrVII 968486 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=2.717;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.040;QD=20.37;ReadPosRankSum=2.396;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1907,213,0 chrVII 968725 . T C 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.091;DP=71;Dels=0.00;FS=10.721;HaplotypeScore=6.0444;MLEAC=1;MLEAF=0.500;MQ=53.49;MQ0=0;MQRankSum=2.471;QD=0.99;ReadPosRankSum=-3.942;SB=-9.252e-03 GT:AD:DP:GQ:PL 0/1:61,10:71:29:100,0,29 chrVII 968764 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=16.79;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1410,153,0 chrVII 969304 . T C 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.525;QD=17.97;ReadPosRankSum=1.681;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1255,141,0 chrVII 969339 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.095;QD=20.33;ReadPosRankSum=1.692;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1802,198,0 chrVII 969533 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.78;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1477,159,0 chrVII 969646 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.02;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1655,174,0 chrVII 969745 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.94;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2186,234,0 chrVII 969753 . A G 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=0.600;QD=19.18;ReadPosRankSum=1.698;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1970,222,0 chrVII 969927 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.96;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1153,126,0 chrVII 970084 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.28;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1254,141,0 chrVII 970088 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=14.00;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1237,138,0 chrVII 970284 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.17;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1396,156,0 chrVII 970290 . A T 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=5.174;HaplotypeScore=6.6607;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.162;QD=17.23;ReadPosRankSum=1.601;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1394,150,0 chrVII 970433 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.34;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1116,123,0 chrVII 970801 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.85;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1838,201,0 chrVII 970807 . T C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.354;QD=20.64;ReadPosRankSum=2.842;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1746,195,0 chrVII 971296 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.76;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2415,270,0 chrVII 971305 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=1.083;QD=19.86;ReadPosRankSum=1.701;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2277,252,0 chrVII 971377 . T G 1716 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.72;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1749,201,0 chrVII 971401 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.99;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2012,228,0 chrVII 971467 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.31;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1736,195,0 chrVII 971479 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.48;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1816,195,0 chrVII 971671 . A G 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=6.392;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.558;QD=19.84;ReadPosRankSum=2.404;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2176,246,0 chrVII 971686 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.57;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1853,198,0 chrVII 971719 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.6045;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.91;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2000,222,0 chrVII 971746 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.10;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2083,225,0 chrVII 971914 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.35;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1666,186,0 chrVII 971955 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.5418;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.41;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2238,240,0 chrVII 972004 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.30;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2632,294,0 chrVII 972322 . T C 2718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.982;QD=20.28;ReadPosRankSum=1.655;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2751,309,0 chrVII 972825 . C T 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.7546;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.379;QD=19.25;ReadPosRankSum=0.115;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2131,231,0 chrVII 972898 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.94;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1491,168,0 chrVII 972982 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=23.6412;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=17.47;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1326,147,0 chrVII 973057 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.10;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2221,240,0 chrVII 973111 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9112;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.93;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1528,174,0 chrVII 973354 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.81;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1906,213,0 chrVII 973417 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.23;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1469,171,0 chrVII 973795 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.80;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1302,144,0 chrVII 973814 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.09;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1446,153,0 chrVII 974056 . A G 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.866;QD=21.92;ReadPosRankSum=1.540;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:93:822,93,0 chrVII 974385 . T A 957 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:990,111,0 chrVII 974423 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1238,138,0 chrVII 974639 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.78;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1180,129,0 chrVII 974654 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.59;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1385,153,0 chrVII 974684 . A T 1402 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=18.69;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1435,159,0 chrVII 975043 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.31;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1556,168,0 chrVII 975047 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=16.16;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1487,165,0 chrVII 975265 . A C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.300;QD=15.70;ReadPosRankSum=1.666;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1682,192,0 chrVII 975463 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.95;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1328,144,0 chrVII 975499 . T A 1106 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.87;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1139,123,0 chrVII 975632 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1139,123,0 chrVII 975940 . T G 1746 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.10;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1779,201,0 chrVII 976015 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.243;QD=20.52;ReadPosRankSum=1.694;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1921,219,0 chrVII 976105 . A G 3349.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.63;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,145:148:99:3349,384,0 chrVII 976297 . A G 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.336;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.161;QD=20.03;ReadPosRankSum=1.696;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1996,228,0 chrVII 976327 . A G 1791 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.12;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1824,207,0 chrVII 976931 . T C 974 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.14;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1007,114,0 chrVII 977494 . A G 918 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.86;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:951,108,0 chrVII 977855 . A T 867 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-0.363;QD=19.70;ReadPosRankSum=1.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:96:900,96,0 chrVII 977933 . T A 435 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.884;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=18.91;ReadPosRankSum=2.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,21:23:51:468,51,0 chrVII 978858 . T C 2574 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.75;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2607,294,0 chrVII 979414 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.09;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2463,264,0 chrVII 979545 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.97;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1354,153,0 chrVII 979683 . A C 2123 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.81;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2156,249,0 chrVII 980911 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.72;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1939,225,0 chrVII 981100 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1149,129,0 chrVII 981478 . A G 956 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:989,114,0 chrVII 981937 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.12;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1792,201,0 chrVII 982079 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.82;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1294,138,0 chrVII 982112 . C T 985 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.94;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1018,108,0 chrVII 982548 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.87;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1848,207,0 chrVII 982668 . A T 1509 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=16.77;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1542,168,0 chrVII 982687 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.22;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1296,141,0 chrVII 982728 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=16.31;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1778,201,0 chrVII 983061 . G C 977 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=15.51;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1010,117,0 chrVII 983091 . G C 865 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=13.95;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:898,102,0 chrVII 983112 . G A 766 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=12.77;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:799,87,0 chrVII 983114 . T C 701 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=6.850;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;MQRankSum=1.357;QD=11.49;ReadPosRankSum=2.329;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:81:734,81,0 chrVII 983122 . G C 600 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=10.53;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:633,72,0 chrVII 983124 . A T 642 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=11.26;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:675,72,0 chrVII 983125 . A G 602 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=10.20;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:72:635,72,0 chrVII 983126 . C T 652 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=11.05;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:72:685,72,0 chrVII 983164 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=10.98;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:81:758,81,0 chrVII 983588 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.95;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1604,171,0 chrVII 983919 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.76;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2274,255,0 chrVII 984084 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.180;QD=20.07;ReadPosRankSum=1.682;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1418,159,0 chrVII 984165 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.118;QD=16.26;ReadPosRankSum=1.698;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,102:106:99:1757,198,0 chrVII 984362 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.60;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1562,165,0 chrVII 984382 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.81;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1385,153,0 chrVII 984558 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.82;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1191,132,0 chrVII 984559 . A T 1164 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.91;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1197,129,0 chrVII 984603 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=11.4530;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=15.89;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1177,132,0 chrVII 984677 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.72;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1119,126,0 chrVII 984935 . T C 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.26;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2483,279,0 chrVII 985050 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.93;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1707,189,0 chrVII 985136 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.20;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1476,159,0 chrVII 985210 . T C 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=100;Dels=0.00;FS=7.301;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.783;QD=18.51;ReadPosRankSum=2.400;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1884,213,0 chrVII 985232 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.01;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2040,228,0 chrVII 985352 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.26;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1636,174,0 chrVII 985412 . T G 982 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=14.23;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1015,114,0 chrVII 985520 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.61;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:919,99,0 chrVII 985797 . C T 905 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:99:938,99,0 chrVII 985817 . G A 819 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:99:852,99,0 chrVII 985834 . T A 47.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=28.7120;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=1.33;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:9:80,9,0 chrVII 986049 . A C 1654 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.35;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1687,195,0 chrVII 986118 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.35;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1799,195,0 chrVII 986380 . A T 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=4.364;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.278;QD=22.81;ReadPosRankSum=1.701;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2611,282,0 chrVII 986601 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.29;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1555,174,0 chrVII 986763 . T A 1508 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.22;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1541,168,0 chrVII 986764 . G T 1507 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.20;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1540,168,0 chrVII 986874 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1662,183,0 chrVII 987032 . C A 526 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=15.03;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:559,60,0 chrVII 987228 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.68;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1439,156,0 chrVII 987273 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.58;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:973,111,0 chrVII 987417 . T C 324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.520;QD=16.20;ReadPosRankSum=1.561;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:39:357,39,0 chrVII 987450 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.86;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:944,108,0 chrVII 987489 . A G 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.10;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,153,0 chrVII 987590 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.23;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1145,123,0 chrVII 987595 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=18.40;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1229,129,0 chrVII 987713 . A G 452 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.65;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:54:485,54,0 chrVII 987788 . T G 337 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.85;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:42:370,42,0 chrVII 987829 . T C 498 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=14.65;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:60:531,60,0 chrVII 987893 . C T 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.170;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=0.917;QD=11.75;ReadPosRankSum=1.664;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:69:632,69,0 chrVII 987900 . T G 399 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=8.49;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:47:51:432,51,0 chrVII 987926 . G A 356 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=15.48;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:389,42,0 chrVII 987961 . A G 598 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=16.16;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:631,72,0 chrVII 987973 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=15.31;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:66:630,66,0 chrVII 987979 . C T 614 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:69:647,69,0 chrVII 988018 . A G 728 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:84:761,84,0 chrVII 988108 . T C 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.172;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.524;QD=20.39;ReadPosRankSum=3.117;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,29:33:81:706,81,0 chrVII 988162 . T C 886 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.72;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:919,105,0 chrVII 988195 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.65;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1075,120,0 chrVII 988333 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.55;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1757,192,0 chrVII 988432 . T C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.308;DP=85;Dels=0.00;FS=8.218;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.880;QD=21.61;ReadPosRankSum=3.350;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:4,80:85:99:1870,216,0 chrVII 988609 . T C 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.737;QD=19.82;ReadPosRankSum=1.533;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1757,201,0 chrVII 988732 . T G 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=17.4299;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.058;QD=20.00;ReadPosRankSum=1.701;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2313,261,0 chrVII 988808 . G C 1271 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.13;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1304,150,0 chrVII 988813 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.69;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1267,144,0 chrVII 988846 . C A 1377 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.12;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1410,153,0 chrVII 988930 . A G 1082 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=13.52;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1115,126,0 chrVII 988931 . G A 1118 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=13.80;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1151,126,0 chrVII 988933 . C T 1154 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=13.90;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1187,129,0 chrVII 989178 . C A 2716 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.90;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2749,297,0 chrVII 989297 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.70;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1420,156,0 chrVII 989305 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.561;QD=20.08;ReadPosRankSum=1.683;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1459,162,0 chrVII 989383 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.09;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1045,111,0 chrVII 989564 . C G 1762 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.02;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1795,204,0 chrVII 989918 . T C 1013 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.51;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1046,117,0 chrVII 990588 . G T 1685 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.37;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1718,189,0 chrVII 990823 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.38;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1316,147,0 chrVII 990841 . C A 1273 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.73;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1306,141,0 chrVII 990971 . A T 1481 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.29;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1514,174,0 chrVII 991010 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=18.71;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1455,156,0 chrVII 991026 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.63;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1449,156,0 chrVII 991689 . T C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.389;QD=19.79;ReadPosRankSum=2.400;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1972,222,0 chrVII 991695 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.98;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2047,213,0 chrVII 991713 . A G 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=104;Dels=0.00;FS=4.728;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.492;QD=18.45;ReadPosRankSum=0.086;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,100:104:99:1952,216,0 chrVII 991740 . C G 2181 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.17;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2214,249,0 chrVII 992004 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5283;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.306;QD=21.39;ReadPosRankSum=1.698;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2215,252,0 chrVII 992313 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1379,150,0 chrVII 992433 . T C 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=3.575;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.197;QD=17.30;ReadPosRankSum=1.704;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:1,122:126:99:2213,252,0 chrVII 992436 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.96;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2188,249,0 chrVII 992448 . C T 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.451;QD=17.42;ReadPosRankSum=1.674;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2106,228,0 chrVII 992799 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.43;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2005,216,0 chrVII 992889 . T C 1961 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.86;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1994,225,0 chrVII 993196 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.58;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1501,162,0 chrVII 994097 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.75;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1506,168,0 chrVII 994263 . C A 946 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.20;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:979,105,0 chrVII 994272 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.77;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1170,126,0 chrVII 994410 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.32;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1984,231,0 chrVII 994492 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6878;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.91;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1810,189,0 chrVII 994624 . C T 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.921;QD=21.01;ReadPosRankSum=1.511;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2008,222,0 chrVII 994826 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=15.02;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:96:874,96,0 chrVII 994938 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=14.27;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1175,132,0 chrVII 994986 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.12;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1197,132,0 chrVII 995040 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.02;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1799,204,0 chrVII 995121 . G T 753 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.31;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:84:786,84,0 chrVII 995153 . C T 485 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=14.70;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:518,57,0 chrVII 995313 . G T 865 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=17.65;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:898,96,0 chrVII 995359 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.63;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1931,213,0 chrVII 995450 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.2370;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.66;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2004,219,0 chrVII 995575 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.76;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1968,222,0 chrVII 995612 . T G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.416;QD=21.75;ReadPosRankSum=1.697;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2208,246,0 chrVII 995616 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.51;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2166,246,0 chrVII 996064 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.96;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1563,174,0 chrVII 996328 . T A 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.233;QD=19.13;ReadPosRankSum=1.577;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1315,138,0 chrVII 997222 . T G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.261;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.253;QD=22.14;ReadPosRankSum=1.615;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2026,228,0 chrVII 997667 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.77;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2058,219,0 chrVII 997840 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.67;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1788,207,0 chrVII 997972 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.84;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2117,231,0 chrVII 998077 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.09;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1600,174,0 chrVII 998078 . C A 1543 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.53;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1576,174,0 chrVII 998685 . A T 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.657;QD=19.97;ReadPosRankSum=-0.979;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1930,210,0 chrVII 999229 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2071;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.03;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1027,117,0 chrVII 999313 . A G 184.03 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=12.27;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:217,24,0 chrVII 999317 . A G 185.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.42;SB=-5.303e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:218,24,0 chrVII 999319 . G C 181.03 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.09;SB=-5.103e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:214,24,0 chrVII 999386 . T C 209.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=8.04;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:242,27,0 chrVII 999392 . C T 258 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=9.56;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:291,30,0 chrVII 999491 . T C 521 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.04;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:63:554,63,0 chrVII 999528 . T C 322 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.95;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:355,39,0 chrVII 999531 . C T 271 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=14.26;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:304,33,0 chrVII 999604 . A G 169.03 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.90;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:24:202,24,0 chrVII 999647 . A G 576 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.20;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:69:609,69,0 chrVII 999666 . A G 770 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:93:803,93,0 chrVII 999722 . C T 1062 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1095,120,0 chrVII 1000433 . A G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=93;Dels=0.00;FS=18.824;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.439;QD=16.47;ReadPosRankSum=2.922;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:3,87:93:99:1565,177,0 chrVII 1000436 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=15.87;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1477,165,0 chrVII 1000645 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.34;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:840,90,0 chrVII 1000659 . T C 721 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=16.02;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:84:754,84,0 chrVII 1000855 . C T 3955.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.57;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,159:161:99:3955,423,0 chrVII 1001631 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=2;QD=17.09;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1588,180,0 chrVII 1001650 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=89;Dels=0.00;FS=2.960;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=3;MQRankSum=-1.957;QD=18.12;ReadPosRankSum=2.334;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1646,180,0 chrVII 1002337 . A G 2131 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.89;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2164,240,0 chrVII 1002500 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1111,120,0 chrVII 1002934 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.83;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1803,207,0 chrVII 1003201 . G C 1484 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1517,171,0 chrVII 1003414 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.19;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1752,198,0 chrVII 1003922 . A C 1130 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.82;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1163,129,0 chrVII 1004183 . C G 630 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:663,75,0 chrVII 1004505 . C T 377 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:45:410,45,0 chrVII 1004519 . T C 344 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.548;DP=25;Dels=0.00;FS=6.990;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.238;QD=13.76;ReadPosRankSum=3.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,20:25:45:377,45,0 chrVII 1004566 . G A 1109 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1142,123,0 chrVII 1004716 . G A 234 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=15.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:15:33:267,33,0 chrVII 1005019 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.36;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1293,144,0 chrVII 1005100 . T C 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=64;Dels=0.00;FS=2.946;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.490;QD=15.61;ReadPosRankSum=2.372;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1032,117,0 chrVII 1005122 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.14;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1250,141,0 chrVII 1005325 . T A 1443 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.32;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1476,162,0 chrVII 1005907 . T G 1133 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.57;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1166,132,0 chrVII 1006084 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.69;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1877,201,0 chrVII 1006113 . G A 2280 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.03;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2313,243,0 chrVII 1006143 . C A 2024 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.76;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2057,222,0 chrVII 1006156 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.92;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2076,231,0 chrVII 1006351 . A G 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=68;Dels=0.00;FS=4.523;HaplotypeScore=2.6583;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.713;QD=18.04;ReadPosRankSum=1.681;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1260,141,0 chrVII 1006376 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.26;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1208,138,0 chrVII 1006502 . A G 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=130;Dels=0.00;FS=6.044;HaplotypeScore=9.9950;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.613;QD=19.90;ReadPosRankSum=2.853;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2620,297,0 chrVII 1006715 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.09;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1811,195,0 chrVII 1006748 . C T 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=21.62;ReadPosRankSum=0.000;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1763,192,0 chrVII 1007272 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.579;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.517;QD=21.48;ReadPosRankSum=1.702;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2482,276,0 chrVII 1008148 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.02;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1000,111,0 chrVII 1008259 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.94;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1349,156,0 chrVII 1008373 . C A 1551 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.86;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1584,171,0 chrVII 1008427 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1434,153,0 chrVII 1008469 . C T 1207 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=21.18;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1240,135,0 chrVII 1008481 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=0.256;QD=17.93;ReadPosRankSum=1.675;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1127,126,0 chrVII 1008529 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=21.25;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1648,180,0 chrVII 1008592 . T C 1763 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.99;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1796,198,0 chrVII 1008710 . T C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.993;QD=21.01;ReadPosRankSum=1.686;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1630,183,0 chrVII 1008781 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.89;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:928,105,0 chrVII 1008847 . A G 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=-0.404;QD=13.98;ReadPosRankSum=1.617;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:872,99,0 chrVII 1008855 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=14.19;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:913,102,0 chrVII 1008859 . T G 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=3.072;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-0.790;QD=14.28;ReadPosRankSum=2.369;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:904,99,0 chrVII 1008896 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=14.50;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1106,126,0 chrVII 1008919 . T A 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=6.727;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=-0.956;QD=15.31;ReadPosRankSum=2.381;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1120,123,0 chrVII 1008929 . T G 929 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=15.75;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:962,111,0 chrVII 1008937 . C A 1096 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=17.97;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1129,123,0 chrVII 1009086 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.06;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1486,162,0 chrVII 1009263 . A G 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.476;DP=61;Dels=0.00;FS=13.468;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.441;QD=15.98;ReadPosRankSum=2.849;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:3,57:61:99:1008,114,0 chrVII 1009276 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.40;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1061,120,0 chrVII 1009499 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=16.26;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1724,189,0 chrVII 1009506 . A T 1602 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=16.02;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1635,177,0 chrVII 1009510 . C T 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-0.286;QD=15.53;ReadPosRankSum=1.580;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1446,156,0 chrVII 1009540 . C A 1172 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=13.47;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1205,129,0 chrVII 1009567 . T C 831 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=12.59;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:864,99,0 chrVII 1009636 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.89;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1266,138,0 chrVII 1009713 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.77;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1342,144,0 chrVII 1009717 . C G 1189 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=15.24;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1222,141,0 chrVII 1009767 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.16;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1303,147,0 chrVII 1009985 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.87;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1433,156,0 chrVII 1010005 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.01;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1374,156,0 chrVII 1010455 . G C 1531 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.14;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1564,180,0 chrVII 1010860 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.66;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:798,87,0 chrVII 1010934 . C G 405 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=8.80;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:48:438,48,0 chrVII 1011163 . C G 973 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=17.07;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1006,111,0 chrVII 1011166 . C A 968 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.98;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1001,108,0 chrVII 1011188 . G C 1062 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=15.39;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1095,123,0 chrVII 1011203 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=16.27;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1074,120,0 chrVII 1011379 . G A 410 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.50;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:48:443,48,0 chrVII 1011503 . A G 570 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-1.545;QD=15.41;ReadPosRankSum=1.639;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,36:37:69:603,69,0 chrVII 1011639 . A G 151.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.11;SB=-5.081e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:21:184,21,0 chrVII 1011792 . C T 296 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.58;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:329,36,0 chrVII 1012069 . T A 480 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.46;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:513,57,0 chrVII 1012544 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.40;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2677,306,0 chrVII 1012706 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.21;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2319,252,0 chrVII 1012742 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.61;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2386,264,0 chrVII 1012781 . A G 2629 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.09;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2662,303,0 chrVII 1012901 . G A 2577 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.6500;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.02;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2610,285,0 chrVII 1012976 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.91;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1931,213,0 chrVII 1013000 . C G 1921 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.00;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1954,219,0 chrVII 1013720 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=15.41;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1266,135,0 chrVII 1013788 . C A 1860 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.44;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1893,207,0 chrVII 1014095 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.35;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:75:657,75,0 chrVII 1014141 . T A 934 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.68;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:967,105,0 chrVII 1014179 . T A 878 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.42;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:911,99,0 chrVII 1014216 . A G 1043 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.86;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1076,117,0 chrVII 1014663 . C G 1214 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1247,135,0 chrVII 1014724 . T C 1133 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.23;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1166,132,0 chrVII 1014774 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.83;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1332,153,0 chrVII 1014835 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.59;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1868,204,0 chrVII 1014918 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.54;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1611,180,0 chrVII 1015016 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.86;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1563,168,0 chrVII 1015147 . T G 1806 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.30;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1839,207,0 chrVII 1015266 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.997;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.108;QD=20.66;ReadPosRankSum=2.357;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1686,192,0 chrVII 1015493 . C A 1015 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.62;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1048,111,0 chrVII 1015673 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.82;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1256,141,0 chrVII 1016004 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.84;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1389,159,0 chrVII 1016232 . G A 3378.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.13;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3378,372,0 chrVII 1016394 . A G 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;DP=141;Dels=0.00;FS=5.582;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.922;QD=18.59;ReadPosRankSum=2.950;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:3,138:141:99:2654,300,0 chrVII 1016553 . T G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=138;Dels=0.00;FS=8.487;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.848;QD=17.99;ReadPosRankSum=2.394;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:2,130:138:99:2516,285,0 chrVII 1016640 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1469,168,0 chrVII 1016792 . A G 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.857;QD=13.87;ReadPosRankSum=2.390;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:2,80:86:99:1226,138,0 chrVII 1016816 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=96;Dels=0.00;FS=14.300;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.211;QD=17.52;ReadPosRankSum=3.328;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1715,198,0 chrVII 1018075 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.18;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1062,123,0 chrVII 1018624 . T C 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=4.938;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.294;QD=18.35;ReadPosRankSum=1.667;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1024,114,0 chrVII 1019116 . G C 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=57;Dels=0.00;FS=3.332;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.361;QD=19.65;ReadPosRankSum=-1.485;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1153,129,0 chrVII 1019203 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=15.46;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1007,114,0 chrVII 1019210 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-1.270;QD=17.07;ReadPosRankSum=1.617;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1057,114,0 chrVII 1019364 . T C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.347;QD=18.72;ReadPosRankSum=1.668;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1044,120,0 chrVII 1019751 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.80;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2199,237,0 chrVII 1020978 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.75;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2482,276,0 chrVII 1021064 . A G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=4.536;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.026;QD=19.32;ReadPosRankSum=1.700;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2120,237,0 chrVII 1021077 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.23;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1956,216,0 chrVII 1021490 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=4.771;HaplotypeScore=10.3894;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.950;QD=22.22;ReadPosRankSum=1.695;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2144,240,0 chrVII 1021623 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1648,180,0 chrVII 1022119 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.33;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1073,117,0 chrVII 1022181 . A T 465 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=12.24;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:498,54,0 chrVII 1022196 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.6921;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=12.48;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:45:420,45,0 chrVII 1022301 . A G 702 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.06;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:735,81,0 chrVII 1022320 . G T 480 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.46;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:513,54,0 chrVII 1022327 . T C 441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.733;QD=16.33;ReadPosRankSum=1.605;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:54:474,54,0 chrVII 1022387 . C G 922 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.05;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:955,108,0 chrVII 1022442 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.48;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1319,147,0 chrVII 1022816 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.42;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1483,165,0 chrVII 1022910 . A G 1389 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.52;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1422,159,0 chrVII 1023056 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.39;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1466,162,0 chrVII 1023234 . A T 1713 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1746,198,0 chrVII 1023277 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.71;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2333,249,0 chrVII 1023633 . G A 1924 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.32;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1957,210,0 chrVII 1023685 . T C 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=4.949;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.855;QD=17.36;ReadPosRankSum=1.547;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1335,150,0 chrVII 1024005 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.466;QD=21.75;ReadPosRankSum=1.695;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2056,237,0 chrVII 1024185 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.60;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1509,162,0 chrVII 1024337 . G C 1926 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.86;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1959,219,0 chrVII 1024488 . T C 2459 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2492,282,0 chrVII 1024792 . T G 1470 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1503,168,0 chrVII 1025033 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.31;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1848,210,0 chrVII 1025187 . G C 1120 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.65;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1153,129,0 chrVII 1025361 . A G 3208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=159;Dels=0.00;FS=6.675;HaplotypeScore=10.3960;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.136;QD=20.18;ReadPosRankSum=2.419;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:2,157:159:99:3241,369,0 chrVII 1025709 . C T 2319 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.17;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2352,252,0 chrVII 1026201 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.54;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2144,234,0 chrVII 1027279 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1664,186,0 chrVII 1027359 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.66;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2797,315,0 chrVII 1027579 . T G 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=3.393;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.313;QD=19.64;ReadPosRankSum=1.649;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1663,186,0 chrVII 1027604 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.8167;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.41;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2094,240,0 chrVII 1027936 . T C 1021 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.02;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1054,117,0 chrVII 1028091 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.5663;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.41;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2474,261,0 chrVII 1028305 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.58;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1377,153,0 chrVII 1028485 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.24;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1286,147,0 chrVII 1028507 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.137;QD=21.78;ReadPosRankSum=1.678;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1427,156,0 chrVII 1029431 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1021,111,0 chrVII 1029502 . G A 962 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:995,111,0 chrVII 1030416 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1281,138,0 chrVII 1030489 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.29;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1151,123,0 chrVII 1030794 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.51;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1789,192,0 chrVII 1030897 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.08;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:937,105,0 chrVII 1030902 . C T 772 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.44;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:805,90,0 chrVII 1031026 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.09;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1765,189,0 chrVII 1031055 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.55;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1517,171,0 chrVII 1031137 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.84;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1721,192,0 chrVII 1031217 . A C 1581 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.52;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1614,183,0 chrVII 1031230 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.82;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1678,189,0 chrVII 1031339 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.84;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1627,171,0 chrVII 1031636 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.73;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1756,189,0 chrVII 1031685 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.69;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1688,180,0 chrVII 1031725 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1960,213,0 chrVII 1031802 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.48;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2163,246,0 chrVII 1031857 . A G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.643;DP=82;Dels=0.00;FS=4.845;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.318;QD=19.68;ReadPosRankSum=3.566;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1647,186,0 chrVII 1031894 . C G 1558 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.50;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1591,183,0 chrVII 1031952 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.666;QD=21.32;ReadPosRankSum=2.393;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1888,213,0 chrVII 1032118 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1579,177,0 chrVII 1032459 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.66;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1549,171,0 chrVII 1033284 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.79;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1947,207,0 chrVII 1033467 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.38;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2204,237,0 chrVII 1033597 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1959,207,0 chrVII 1033653 . A T 1790 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.06;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1823,198,0 chrVII 1033830 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,150,0 chrVII 1033866 . T C 898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=54;Dels=0.00;FS=3.707;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.476;QD=16.63;ReadPosRankSum=1.668;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:931,105,0 chrVII 1034067 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.321;QD=22.12;ReadPosRankSum=1.689;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1825,210,0 chrVII 1034541 . A G 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.011;QD=21.21;ReadPosRankSum=1.660;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1051,117,0 chrVII 1034625 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1188,132,0 chrVII 1034811 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.95;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1350,150,0 chrVII 1034846 . G A 1707 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.76;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1740,186,0 chrVII 1035138 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.67;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1666,183,0 chrVII 1035498 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.06;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1568,177,0 chrVII 1035627 . A G 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=4.327;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.066;QD=21.02;ReadPosRankSum=1.679;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2765,315,0 chrVII 1036356 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.43;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2500,270,0 chrVII 1036371 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0366;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.60;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2091,234,0 chrVII 1037301 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1544,174,0 chrVII 1037556 . A C 1478 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0399;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.25;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1511,171,0 chrVII 1037791 . A T 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=8.391;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.849;QD=23.95;ReadPosRankSum=2.387;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1901,204,0 chrVII 1038681 . A T 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.724;QD=21.04;ReadPosRankSum=1.669;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1190,123,0 chrVII 1038689 . T C 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.624;QD=17.39;ReadPosRankSum=1.663;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:920,105,0 chrVII 1038693 . C A 802 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.73;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:835,93,0 chrVII 1039298 . T G 1488 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.00;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1521,171,0 chrVII 1039378 . A C 1976 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2009,225,0 chrVII 1039425 . A C 1991 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.42;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2024,225,0 chrVII 1039460 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=6.7937;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.24;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1620,183,0 chrVII 1039470 . C G 1657 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6747;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.41;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1690,189,0 chrVII 1039568 . T A 1351 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.47;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1384,153,0 chrVII 1039575 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.82;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1199,135,0 chrVII 1039621 . A G 926 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.90;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:959,108,0 chrVII 1039634 . A T 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.527;QD=18.33;ReadPosRankSum=1.657;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:876,99,0 chrVII 1039678 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.29;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1393,153,0 chrVII 1039783 . T G 1432 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.75;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1465,165,0 chrVII 1039805 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=21.07;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1466,162,0 chrVII 1040012 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.56;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1157,126,0 chrVII 1040013 . C T 1200 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.05;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1233,135,0 chrVII 1040155 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=15.96;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1166,126,0 chrVII 1040349 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.89;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1923,216,0 chrVII 1040573 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.3067;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.65;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1153,129,0 chrVII 1041395 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.98;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1242,141,0 chrVII 1041632 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.49;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1119,117,0 chrVII 1041701 . T C 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.254;QD=22.21;ReadPosRankSum=1.673;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1321,150,0 chrVII 1041814 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.88;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1749,198,0 chrVII 1041874 . T C 1281 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.41;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1314,147,0 chrVII 1042019 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.14;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:899,96,0 chrVII 1042643 . T G 1837 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1870,213,0 chrVII 1043244 . A G 2559 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.87;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2592,288,0 chrVII 1043391 . T C 2707 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8899;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.19;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2740,312,0 chrVII 1043695 . T C 1886 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.426;QD=16.69;ReadPosRankSum=0.138;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:1919,200,0 chrVII 1044068 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.4034;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.58;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:1275,144,0 chrVII 1044161 . T C 2031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.809;DP=100;Dels=0.00;FS=2.604;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.192;QD=20.31;ReadPosRankSum=2.930;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2064,234,0 chrVII 1044266 . A C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.576;DP=90;Dels=0.00;FS=18.827;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.638;QD=18.94;ReadPosRankSum=3.664;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:5,85:90:99:1738,195,0 chrVII 1044308 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.84;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1492,159,0 chrVII 1044356 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.05;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1312,150,0 chrVII 1044371 . A G 1321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.933;QD=16.94;ReadPosRankSum=1.599;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1354,156,0 chrVII 1044966 . T C 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.304;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.696;QD=19.30;ReadPosRankSum=0.768;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1905,210,0 chrVII 1045013 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.73;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1723,192,0 chrVII 1045136 . T G 1406 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.32;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1439,162,0 chrVII 1045190 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.58;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1436,153,0 chrVII 1045214 . A T 1482 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.48;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1515,162,0 chrVII 1045427 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.54;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1390,156,0 chrVII 1046258 . C T 2696 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6952;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.66;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2729,294,0 chrVII 1048356 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9980;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=25.30;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1905,210,0 chrVII 1048419 . T C 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;DP=91;Dels=0.00;FS=7.455;HaplotypeScore=2.5243;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=0;MQRankSum=-1.717;QD=0.17;ReadPosRankSum=2.606;SB=-3.330e+02 GT:AD:DP:GQ:PL 0/1:56,35:91:45:45,0,796 chrVII 1048437 . G A 255.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.740;DP=75;Dels=0.00;FS=0.882;HaplotypeScore=4.9939;MLEAC=1;MLEAF=0.500;MQ=38.57;MQ0=0;MQRankSum=1.512;QD=3.40;ReadPosRankSum=6.439;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:31,44:75:99:285,0,190 chrVII 1049349 . T C 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=5.441;HaplotypeScore=7.4251;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.060;QD=18.04;ReadPosRankSum=1.697;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1801,207,0 chrVII 1050866 . T A 1430 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1463,156,0 chrVII 1051093 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.37;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1266,144,0 chrVII 1051154 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.85;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2137,240,0 chrVII 1051991 . A G 948 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:981,108,0 chrVII 1052107 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.89;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1132,123,0 chrVII 1052257 . T A 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=48;Dels=0.00;FS=2.211;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.213;QD=18.00;ReadPosRankSum=2.470;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:99:897,102,0 chrVII 1052548 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.80;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1281,141,0 chrVII 1052841 . G A 1322 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.11;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1355,144,0 chrVII 1052940 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.40;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2002,216,0 chrVII 1053627 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.00;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1965,213,0 chrVII 1054383 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.51;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1345,150,0 chrVII 1054411 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.84;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1518,168,0 chrVII 1055001 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.61;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1406,150,0 chrVII 1055022 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.12;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1913,210,0 chrVII 1055127 . A G 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.080;QD=19.85;ReadPosRankSum=1.519;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1323,150,0 chrVII 1055601 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.01;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1364,150,0 chrVII 1055697 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.91;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1367,156,0 chrVII 1056387 . T A 960 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.33;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:993,108,0 chrVII 1056405 . A T 935 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.70;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:968,105,0 chrVII 1057500 . C T 487 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=12.49;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:57:520,57,0 chrVII 1057542 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.00;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1353,147,0 chrVII 1057559 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.38;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1419,165,0 chrVII 1057568 . T A 1471 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.32;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1504,165,0 chrVII 1057752 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.22;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1635,180,0 chrVII 1057770 . A T 1280 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.69;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1313,141,0 chrVII 1059000 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.543;QD=18.52;ReadPosRankSum=1.698;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1941,216,0 chrVII 1059009 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1293;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.66;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1992,231,0 chrVII 1059071 . G T 2062 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.48;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2095,222,0 chrVII 1059129 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.81;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2057,225,0 chrVII 1059249 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.08;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1552,177,0 chrVII 1059252 . T C 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=87;Dels=0.00;FS=2.593;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.666;QD=17.56;ReadPosRankSum=2.393;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1561,177,0 chrVII 1059363 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.9573;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=16.64;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1930,213,0 chrVII 1059977 . T G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.067;DP=114;Dels=0.00;FS=7.276;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.364;QD=21.60;ReadPosRankSum=4.105;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:6,108:114:99:2495,276,0 chrVII 1060055 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.06;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1732,186,0 chrVII 1060130 . A C 1898 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.41;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1931,219,0 chrVII 1060260 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.07;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2284,246,0 chrVII 1061571 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5608;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=17.55;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1121,126,0 chrVII 1061731 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.27;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1703,183,0 chrVII 1061803 . A G 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.407;HaplotypeScore=7.8840;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.084;QD=21.90;ReadPosRankSum=1.698;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2333,267,0 chrVII 1061926 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.7934;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.64;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1545,165,0 chrVII 1062031 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.65;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1251,141,0 chrVII 1062188 . C G 1570 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.70;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1603,183,0 chrVII 1062599 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.68;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1391,159,0 chrVII 1063387 . T C 202.01 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=11.88;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:235,27,0 chrVII 1063629 . T C 200.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:233,27,0 chrVII 1064969 . A G 1855 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2108;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.57;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1888,210,0 chrVII 1065116 . A C 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=1;QD=20.69;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,168,0 chrVII 1065185 . T C 909 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.55;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:942,102,0 chrVII 1065365 . C T 673 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=12.46;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,53:54:75:706,75,0 chrVII 1065367 . C G 600 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=11.54;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:72:633,72,0 chrVII 1065480 . A T 1324 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.06;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1357,150,0 chrVII 1065591 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.12;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1338,150,0 chrVII 1065722 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=25.52;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2177,237,0 chrVII 1065775 . C T 532 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=14.38;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:565,60,0 chrVII 1065808 . A T 1043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.374;QD=17.98;ReadPosRankSum=1.673;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1076,114,0 chrVII 1065878 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.19;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1664,189,0 chrVII 1065916 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.507;QD=19.38;ReadPosRankSum=1.436;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1622,180,0 chrVII 1065940 . G A 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=9.322;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=1.312;QD=16.75;ReadPosRankSum=2.260;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1356,150,0 chrVII 1065941 . T G 1277 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.37;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1310,150,0 chrVII 1066008 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.09;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2141,231,0 chrVII 1066011 . T C 2060 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=16.35;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2093,231,0 chrVII 1066050 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.17;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2196,237,0 chrVII 1066097 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=25.13;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2873,303,0 chrVII 1066166 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.08;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1445,159,0 chrVII 1066178 . T C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=2.966;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-0.844;QD=18.01;ReadPosRankSum=2.339;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1636,180,0 chrVII 1066293 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.08;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2506,270,0 chrVII 1066316 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=18.71;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1754,186,0 chrVII 1066339 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=80.8830;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=17.14;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1576,177,0 chrVII 1066367 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=13.58;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1513,165,0 chrVII 1066374 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8447;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.82;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1678,189,0 chrVII 1066820 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9784;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=25.48;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2352,249,0 chrVII 1067150 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.969;QD=19.25;ReadPosRankSum=1.703;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2324,258,0 chrVII 1067609 . A G 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.360;DP=131;Dels=0.00;FS=66.412;HaplotypeScore=4.3316;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=0;MQRankSum=-7.742;QD=0.20;ReadPosRankSum=-1.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,30:131:56:56,0,1972 chrVII 1067738 . G T 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.614;DP=105;Dels=0.01;FS=10.267;HaplotypeScore=10.1961;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=4.339;QD=19.88;ReadPosRankSum=-0.354;SB=-8.614e+02 GT:AD:DP:GQ:PL 1/1:7,95:104:99:2120,205,0 chrVII 1067897 . G A 174.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;DP=161;Dels=0.00;FS=6.497;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=52.30;MQ0=0;MQRankSum=-9.269;QD=1.08;ReadPosRankSum=-2.003;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:105,54:161:99:204,0,2013 chrVII 1067981 . A G 1402.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=16.6895;MLEAC=1;MLEAF=0.500;MQ=49.94;MQ0=0;MQRankSum=-8.180;QD=7.97;ReadPosRankSum=0.209;SB=-5.310e+02 GT:AD:DP:GQ:PL 0/1:89,86:176:99:1432,0,1693 chrVII 1068017 . A C 1024.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.365;DP=168;Dels=0.00;FS=17.018;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=49.53;MQ0=0;MQRankSum=-7.232;QD=6.10;ReadPosRankSum=0.582;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:96,72:168:99:1054,0,1901 chrVII 1068132 . C T 396.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.829;DP=203;Dels=0.00;FS=4.118;HaplotypeScore=15.5283;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=0;MQRankSum=-9.804;QD=1.95;ReadPosRankSum=-0.521;SB=-6.530e+02 GT:AD:DP:GQ:PL 0/1:126,77:203:99:426,0,2197 chrVII 1068149 . G A 758.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.787;DP=241;Dels=0.00;FS=1.019;HaplotypeScore=14.5888;MLEAC=1;MLEAF=0.500;MQ=51.74;MQ0=0;MQRankSum=-9.487;QD=3.15;ReadPosRankSum=0.279;SB=-9.270e+02 GT:AD:DP:GQ:PL 0/1:142,98:241:99:788,0,2450 chrVII 1068282 . G A 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;DP=136;Dels=0.00;FS=5.112;HaplotypeScore=10.2347;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-3.475;QD=0.43;ReadPosRankSum=-1.151;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:106,30:136:88:88,0,1936 chrVII 1068283 . T C 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.941;DP=134;Dels=0.00;FS=2.820;HaplotypeScore=10.2347;MLEAC=1;MLEAF=0.500;MQ=48.37;MQ0=0;MQRankSum=-3.520;QD=0.31;ReadPosRankSum=-0.654;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:103,28:134:72:72,0,2004 chrVII 1068302 . A T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.899;DP=122;Dels=0.00;FS=5.216;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=47.67;MQ0=0;MQRankSum=-5.092;QD=0.14;ReadPosRankSum=0.808;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:90,32:122:47:47,0,1536 chrVII 1068305 . A T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=131;Dels=0.00;FS=4.620;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=46.94;MQ0=0;MQRankSum=-5.356;QD=0.31;ReadPosRankSum=-0.586;SB=-2.400e+02 GT:AD:DP:GQ:PL 0/1:90,41:131:70:70,0,1494 chrVII 1068308 . A G 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.747;DP=131;Dels=0.00;FS=8.652;HaplotypeScore=7.9648;MLEAC=1;MLEAF=0.500;MQ=46.49;MQ0=0;MQRankSum=-5.178;QD=0.65;ReadPosRankSum=-1.130;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:86,45:131:99:115,0,1516 chrVII 1068344 . G A 352.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.263;DP=162;Dels=0.00;FS=8.923;HaplotypeScore=17.3944;MLEAC=1;MLEAF=0.500;MQ=48.33;MQ0=0;MQRankSum=-5.959;QD=2.17;ReadPosRankSum=1.821;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:94,62:162:99:382,0,1658 chrVII 1068401 . G A 1060.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.309;DP=201;Dels=0.00;FS=7.140;HaplotypeScore=8.0993;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=2;MQRankSum=-1.416;QD=5.27;ReadPosRankSum=-0.090;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:107,94:201:99:1090,0,1589 chrVII 1068404 . G A 1139.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.769;DP=203;Dels=0.00;FS=6.065;HaplotypeScore=14.5323;MLEAC=1;MLEAF=0.500;MQ=46.92;MQ0=2;MQRankSum=-1.740;QD=5.61;ReadPosRankSum=0.935;SB=-5.670e+02 GT:AD:DP:GQ:PL 0/1:110,91:203:99:1169,0,1591 chrVII 1068422 . T C 1595.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.635;DP=198;Dels=0.00;FS=9.522;HaplotypeScore=11.2475;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=4;MQRankSum=3.023;QD=8.06;ReadPosRankSum=-1.753;SB=-9.650e+02 GT:AD:DP:GQ:PL 0/1:93,104:198:99:1625,0,1213 chrVII 1068524 . T C 1207.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.365;DP=210;Dels=0.00;FS=0.515;HaplotypeScore=26.3482;MLEAC=1;MLEAF=0.500;MQ=53.07;MQ0=0;MQRankSum=-7.548;QD=5.75;ReadPosRankSum=1.928;SB=-6.740e+02 GT:AD:DP:GQ:PL 0/1:120,90:210:99:1237,0,2199 chrVII 1068569 . T C 2843 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=15.3703;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.02;SB=-1.936e+03 GT:AD:DP:GQ:PL 1/1:0,166:167:99:2876,324,0 chrVII 1068608 . A G 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DP=138;Dels=0.00;FS=6.827;HaplotypeScore=18.1639;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=0;MQRankSum=-4.830;QD=0.20;ReadPosRankSum=-0.999;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:107,30:138:57:57,0,1712 chrVII 1068650 . G C 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=12.26;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1541,186,0 chrVII 1068653 . A G 1533 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=12.67;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1566,186,0 chrVII 1068656 . G A 1582 SnpCluster AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=12.36;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:1615,186,0 chrVII 1068659 . A G 1514 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;MQRankSum=-0.624;QD=12.11;ReadPosRankSum=0.485;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:1547,183,0 chrVII 1068695 . C T 393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;DP=149;Dels=0.00;FS=30.345;HaplotypeScore=11.2262;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=0;MQRankSum=-1.309;QD=2.64;ReadPosRankSum=0.632;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,43:149:99:423,0,1400 chrVII 1068706 . T C 542.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.082;DP=165;Dels=0.00;FS=31.956;HaplotypeScore=3.5372;MLEAC=1;MLEAF=0.500;MQ=46.18;MQ0=0;MQRankSum=-2.405;QD=3.28;ReadPosRankSum=1.041;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:114,51:165:99:572,0,1718 chrVII 1068831 . G A 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.164;DP=111;Dels=0.00;FS=44.987;HaplotypeScore=7.3316;MLEAC=1;MLEAF=0.500;MQ=49.03;MQ0=4;MQRankSum=-6.015;QD=0.71;ReadPosRankSum=0.109;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,28:111:99:109,0,1335 chrVII 1068842 . T C 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;DP=117;Dels=0.00;FS=51.041;HaplotypeScore=15.8855;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=3;MQRankSum=-7.179;QD=0.93;ReadPosRankSum=1.147;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,31:117:99:139,0,1458 chrVII 1068848 . G A 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;DP=110;Dels=0.00;FS=36.849;HaplotypeScore=15.1770;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=2;MQRankSum=-7.255;QD=1.35;ReadPosRankSum=0.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,32:110:99:178,0,1157 chrVII 1068856 . G A 220.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.504;DP=108;Dels=0.00;FS=44.139;HaplotypeScore=12.4858;MLEAC=1;MLEAF=0.500;MQ=51.65;MQ0=2;MQRankSum=-7.699;QD=2.04;ReadPosRankSum=1.793;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,30:108:99:250,0,1196 chrVII 1068865 . C A 223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.413;DP=100;Dels=0.00;FS=42.055;HaplotypeScore=8.8081;MLEAC=1;MLEAF=0.500;MQ=51.55;MQ0=1;MQRankSum=-7.371;QD=2.23;ReadPosRankSum=0.739;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,30:100:99:253,0,1103 chrVII 1068869 . C A 203.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;DP=103;Dels=0.00;FS=45.137;HaplotypeScore=10.8127;MLEAC=1;MLEAF=0.500;MQ=51.22;MQ0=1;MQRankSum=-7.443;QD=1.97;ReadPosRankSum=0.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,32:103:99:233,0,1132 chrVII 1068872 . T C 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;DP=104;Dels=0.00;FS=45.340;HaplotypeScore=11.4778;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=1;MQRankSum=-7.525;QD=2.06;ReadPosRankSum=0.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,31:104:99:244,0,1127 chrVII 1068878 . G A 223.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;DP=94;Dels=0.00;FS=38.914;HaplotypeScore=7.3284;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=1;MQRankSum=-6.904;QD=2.37;ReadPosRankSum=-0.552;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,30:94:99:253,0,986 chrVII 1068934 . A C 140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.708;DP=117;Dels=0.00;FS=13.368;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-3.184;QD=1.20;ReadPosRankSum=2.267;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,27:117:99:170,0,1769 chrVII 1068935 . C T 147.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;DP=118;Dels=0.00;FS=15.409;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=52.80;MQ0=0;MQRankSum=-3.402;QD=1.25;ReadPosRankSum=2.537;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,27:118:99:177,0,1633 chrVII 1069265 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1469,165,0 chrVII 1071417 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.25;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1657,186,0 chrVII 1071822 . A C 1084 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=15.94;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1117,123,0 chrVII 1071856 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.99;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1892,204,0 chrVII 1072014 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.72;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2331,249,0 chrVII 1072096 . T A 1323 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.69;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1356,150,0 chrVII 1072360 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1998,225,0 chrVII 1072524 . C T 2336 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.54;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2369,252,0 chrVII 1072857 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.29;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1612,174,0 chrVII 1073047 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.41;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1761,189,0 chrVII 1073467 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.51;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2214,243,0 chrVII 1075157 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.931;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.382;QD=19.57;ReadPosRankSum=1.693;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1794,201,0 chrVII 1075171 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.58;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1795,201,0 chrVII 1075325 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.29;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1780,192,0 chrVII 1075526 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.27;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:862,96,0 chrVII 1075820 . C A 607 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=16.86;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:640,69,0 chrVII 1076208 . G T 49.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=5;QD=3.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:9:82,9,0 chrVII 1076293 . A G 314 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=4;QD=18.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:347,39,0 chrVII 1076432 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.02;MQ0=11;QD=1.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:6:52,6,0 chrVII 1076541 . A G 668 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=15;QD=13.92;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:701,81,0 chrVII 1076590 . A T 905 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=9;QD=16.76;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:938,102,0 chrVII 1076856 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.50;MQ0=10;QD=1.56;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:53,6,0 chrVII 1077997 . C T 82.51 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.77;MQ0=36;QD=2.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:12:115,12,0 chrVII 1078212 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=0;MQRankSum=0.736;QD=7.26;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:53,6,0 chrVII 1078365 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.00;MQ=11.75;MQ0=31;QD=1.26;SB=-2.885e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:9:81,9,0 chrVII 1078474 . A T 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;DP=70;Dels=0.00;FS=1.197;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=18;MQRankSum=0.179;QD=5.09;ReadPosRankSum=-0.028;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:37,33:70:99:386,0,503 chrVII 1078515 . C T 66.51 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.91;MQ0=19;QD=2.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:12:99,12,0 chrVII 1078573 . G A 104.26 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=5;QD=8.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:12:15:137,15,0 chrVII 1078645 . A G 1344 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=63;Dels=0.00;FS=9.031;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=6;MQRankSum=-1.732;QD=21.33;ReadPosRankSum=1.670;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1377,153,0 chrVII 1078750 . T C 3884.01 filter AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=10;QD=23.83;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,162:163:99:3884,432,0 chrVII 1078862 . C T 2388 filter AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=27.15;MQ0=18;QD=19.57;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2421,267,0 chrVII 1078949 . A G 886.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;DP=121;Dels=0.00;FS=6.026;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=11;MQRankSum=-1.723;QD=7.32;ReadPosRankSum=1.334;SB=-4.400e+02 GT:AD:DP:GQ:PL 0/1:57,64:121:99:916,0,815 chrVII 1078968 . G A 921.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.170;DP=139;Dels=0.00;FS=4.229;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=11;MQRankSum=1.577;QD=6.63;ReadPosRankSum=-0.552;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:71,66:139:99:951,0,1012 chrVII 1079017 . G A 1226.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.885;DP=185;Dels=0.00;FS=15.175;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=40.12;MQ0=6;MQRankSum=0.160;QD=6.63;ReadPosRankSum=-0.022;SB=-8.340e+02 GT:AD:DP:GQ:PL 0/1:89,94:185:99:1256,0,1128 chrVII 1079039 . A G 1341.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.264;DP=194;Dels=0.00;FS=4.260;HaplotypeScore=10.4508;MLEAC=1;MLEAF=0.500;MQ=41.28;MQ0=4;MQRankSum=0.303;QD=6.91;ReadPosRankSum=-0.083;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:91,103:194:99:1371,0,1425 chrVII 1079072 . A G 1753.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.881;DP=224;Dels=0.00;FS=3.863;HaplotypeScore=4.3220;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=2;MQRankSum=-1.275;QD=7.83;ReadPosRankSum=-0.047;SB=-7.350e+02 GT:AD:DP:GQ:PL 0/1:115,108:224:99:1783,0,1828 chrVII 1079086 . A G 1598.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.692;DP=215;Dels=0.00;FS=1.714;HaplotypeScore=9.3318;MLEAC=1;MLEAF=0.500;MQ=42.56;MQ0=1;MQRankSum=-0.933;QD=7.43;ReadPosRankSum=-0.155;SB=-8.820e+02 GT:AD:DP:GQ:PL 0/1:102,113:215:99:1628,0,1766 chrVII 1079115 . T C 4414.01 PASS AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.7538;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=1;QD=21.43;SB=-2.286e+03 GT:AD:DP:GQ:PL 1/1:0,205:206:99:4414,513,0 chrVII 1079145 . C T 1293.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.484;DP=192;Dels=0.00;FS=1.796;HaplotypeScore=21.4961;MLEAC=1;MLEAF=0.500;MQ=43.97;MQ0=0;MQRankSum=-3.676;QD=6.73;ReadPosRankSum=-0.910;SB=-7.270e+02 GT:AD:DP:GQ:PL 0/1:103,85:192:99:1323,0,1746 chrVII 1079171 . A T 878.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DP=169;Dels=0.00;FS=1.980;HaplotypeScore=8.1288;MLEAC=1;MLEAF=0.500;MQ=44.56;MQ0=0;MQRankSum=-4.113;QD=5.20;ReadPosRankSum=1.243;SB=-4.950e+02 GT:AD:DP:GQ:PL 0/1:104,65:169:99:908,0,1955 chrVII 1079183 . T C 3487.01 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=5;QD=21.52;SB=-1.972e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3487,393,0 chrVII 1079216 . T C 417.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.755;DP=151;Dels=0.00;FS=5.360;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=41.62;MQ0=10;MQRankSum=-4.125;QD=2.76;ReadPosRankSum=-1.376;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:95,56:151:99:447,0,1740 chrVII 1079230 . A T 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;DP=150;Dels=0.00;FS=7.369;HaplotypeScore=10.4508;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=10;MQRankSum=-3.533;QD=1.69;ReadPosRankSum=0.139;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:106,44:150:99:284,0,2016 chrVII 1079233 . A T 3019 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=42.80;MQ0=10;MQRankSum=1.044;QD=19.99;ReadPosRankSum=1.609;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3052,336,0 chrVII 1079340 . A G 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;DP=87;Dels=0.00;FS=36.897;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=5;MQRankSum=2.683;QD=8.99;ReadPosRankSum=1.344;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:39,48:87:99:812,0,528 chrVII 1079344 . A G 1608 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=5;QD=18.70;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1641,186,0 chrVII 1079375 . A C 572.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DP=102;Dels=0.00;FS=1.963;HaplotypeScore=11.9574;MLEAC=1;MLEAF=0.500;MQ=37.48;MQ0=10;MQRankSum=-3.673;QD=5.61;ReadPosRankSum=-2.158;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:52,50:102:99:602,0,753 chrVII 1079419 . A G 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.348;DP=127;Dels=0.00;FS=6.661;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=9;MQRankSum=-2.533;QD=5.13;ReadPosRankSum=-0.003;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:61,66:127:99:682,0,906 chrVII 1079466 . T G 668.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.964;DP=102;Dels=0.00;FS=17.232;HaplotypeScore=6.3075;MLEAC=1;MLEAF=0.500;MQ=53.85;MQ0=2;MQRankSum=1.479;QD=6.55;ReadPosRankSum=1.350;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:40,62:102:99:698,0,500 chrVII 1079473 . C G 412.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;DP=103;Dels=0.00;FS=20.353;HaplotypeScore=8.7873;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-0.078;QD=4.00;ReadPosRankSum=-1.180;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:64,39:103:99:442,0,706 chrVII 1079517 . G A 1270.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.549;DP=110;Dels=0.00;FS=17.014;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=51.19;MQ0=2;MQRankSum=6.338;QD=11.55;ReadPosRankSum=-1.793;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:34,75:110:99:1300,0,291 chrVII 1079528 . C T 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;DP=113;Dels=0.00;FS=4.136;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=3;MQRankSum=-6.344;QD=1.85;ReadPosRankSum=2.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,34:113:99:239,0,1273 chrVII 1079556 . A G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.168;DP=118;Dels=0.00;FS=9.315;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=4;MQRankSum=-7.392;QD=0.86;ReadPosRankSum=-0.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,27:118:99:131,0,1616 chrVII 1079563 . T C 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.151;DP=121;Dels=0.00;FS=11.518;HaplotypeScore=6.5102;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=4;MQRankSum=-7.398;QD=0.86;ReadPosRankSum=-2.103;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,27:121:99:134,0,1785 chrVII 1079763 . T A 598.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DP=97;Dels=0.00;FS=7.565;HaplotypeScore=11.0415;MLEAC=1;MLEAF=0.500;MQ=47.84;MQ0=1;MQRankSum=0.670;QD=6.17;ReadPosRankSum=-1.167;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:60,37:97:99:628,0,993 chrVII 1079904 . A G 2152 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=5;QD=21.52;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2185,246,0 chrVII 1080032 . G C 1872 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.484;DP=110;Dels=0.00;FS=8.691;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=9;MQRankSum=3.729;QD=17.02;ReadPosRankSum=3.348;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:13,96:110:99:1905,105,0 chrVII 1080259 . T C 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DP=79;Dels=0.00;FS=2.477;HaplotypeScore=11.9508;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=18;MQRankSum=0.015;QD=3.86;ReadPosRankSum=0.030;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:44,34:79:99:335,0,474 chrVII 1080548 . T C 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=35;Dels=0.00;FS=3.882;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=13;MQRankSum=-1.576;QD=1.37;ReadPosRankSum=1.576;SB=-5.047e+01 GT:AD:DP:GQ:PL 1/1:8,27:35:9:80,9,0 chrVII 1080569 . G C 46.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=15;QD=1.38;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:13,21:34:9:79,9,0 chrVII 1080581 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.83;MQ0=19;QD=0.64;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:17,20:37:6:55,6,0 chrVII 1080584 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.01;MQ0=19;QD=0.62;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:17,15:32:6:51,6,0 chrVII 1080758 . C G 378 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=1;QD=11.45;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:48:411,48,0 chrVII 1080825 . G A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DP=55;Dels=0.00;FS=3.841;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.22;MQ0=5;MQRankSum=-0.619;QD=2.04;ReadPosRankSum=-1.747;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:39,16:55:99:142,0,692 chrVII 1080850 . C T 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.727;DP=59;Dels=0.00;FS=5.537;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=5;MQRankSum=0.425;QD=12.98;ReadPosRankSum=0.000;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:18,41:59:99:796,0,181 chrVII 1080931 . A C 953 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=5;QD=18.33;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:986,111,0 chrVII 1080936 . T C 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;DP=50;Dels=0.00;FS=9.908;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.23;MQ0=7;MQRankSum=0.917;QD=6.34;ReadPosRankSum=0.477;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:23,27:50:99:347,0,340 chrVII 1081152 . C A 1091.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=110;Dels=0.00;FS=8.466;HaplotypeScore=12.5571;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=2;MQRankSum=2.855;QD=9.92;ReadPosRankSum=-0.227;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:36,72:110:99:1121,0,355 chrVII 1081188 . G A 2037.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;DP=134;Dels=0.00;FS=4.670;HaplotypeScore=11.8737;MLEAC=1;MLEAF=0.500;MQ=35.16;MQ0=0;MQRankSum=3.832;QD=15.20;ReadPosRankSum=1.615;SB=-7.840e+02 GT:AD:DP:GQ:PL 0/1:22,109:134:68:2067,0,68 chrVII 1081191 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.146;DP=132;Dels=0.00;FS=2.149;HaplotypeScore=24.6025;MLEAC=1;MLEAF=0.500;MQ=35.19;MQ0=0;MQRankSum=-3.094;QD=0.12;ReadPosRankSum=-1.223;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:111,20:132:46:46,0,2075 chrVII 1081221 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2187;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;MQRankSum=-0.386;QD=21.83;ReadPosRankSum=2.387;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2609,303,0 chrVII 1081242 . G A 61.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.573;DP=105;Dels=0.00;FS=25.014;HaplotypeScore=5.0860;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=1;MQRankSum=-1.283;QD=0.58;ReadPosRankSum=0.105;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,17:105:91:91,0,1841 chrVII 1081252 . C G 1919 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=1;QD=21.09;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1952,225,0 chrVII 1081262 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=2;MQRankSum=2.004;QD=20.75;ReadPosRankSum=2.361;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1797,201,0 chrVII 1081363 . G A 242 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=12;QD=4.57;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:30:275,30,0 chrVII 1081375 . C T 189.45 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.682;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=5;MQRankSum=3.747;QD=4.41;ReadPosRankSum=1.379;SB=-2.645e+01 GT:AD:DP:GQ:PL 1/1:14,28:43:7:221,7,0 chrVII 1081403 . C T 209.79 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.122;DP=33;Dels=0.00;FS=1.890;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=1;MQRankSum=3.489;QD=6.36;ReadPosRankSum=-0.073;SB=-1.288e+02 GT:AD:DP:GQ:PL 1/1:9,22:33:10:242,10,0 chrVII 1081407 . G A 239 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.43;MQ0=1;QD=7.97;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:272,30,0 chrVII 1081409 . G A 198.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.943;DP=33;Dels=0.00;FS=2.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=2;MQRankSum=3.654;QD=6.01;ReadPosRankSum=1.466;SB=-1.065e+02 GT:AD:DP:GQ:PL 1/1:13,20:33:7:230,7,0 chrVII 1081440 . G A 408.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;DP=60;Dels=0.00;FS=5.212;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=3;MQRankSum=5.392;QD=6.80;ReadPosRankSum=0.212;SB=-2.412e+02 GT:AD:DP:GQ:PL 0/1:22,38:60:25:438,0,25 chrVII 1081450 . G A 592 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.85;MQ0=4;QD=9.87;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:72:625,72,0 chrVII 1081457 . T C 411.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;DP=65;Dels=0.00;FS=4.303;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=4;MQRankSum=4.278;QD=6.32;ReadPosRankSum=0.618;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:27,38:65:99:441,0,112 chrVII 1081460 . T G 401.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.485;DP=64;Dels=0.00;FS=4.369;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=4;MQRankSum=4.744;QD=6.27;ReadPosRankSum=0.943;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:26,37:64:99:431,0,114 chrVII 1081463 . C T 436.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;DP=66;Dels=0.00;FS=4.224;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=4;MQRankSum=4.459;QD=6.61;ReadPosRankSum=0.860;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:27,39:66:99:466,0,115 chrVII 1081493 . A G 1268 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.850;DP=105;Dels=0.00;FS=63.643;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=6;MQRankSum=-0.416;QD=12.08;ReadPosRankSum=0.334;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:8,97:105:46:1301,46,0 chrVII 1081629 . A G 613.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=111;Dels=0.00;FS=74.482;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=16;MQRankSum=-0.755;QD=5.52;ReadPosRankSum=2.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,43:111:99:643,0,648 chrVII 1081677 . T C 451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;DP=76;Dels=0.00;FS=15.000;HaplotypeScore=14.9936;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=13;MQRankSum=-1.976;QD=5.93;ReadPosRankSum=1.562;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:23,53:76:64:481,0,64 chrVII 1081683 . G T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;DP=69;Dels=0.00;FS=14.094;HaplotypeScore=22.9841;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=12;MQRankSum=-3.035;QD=0.61;ReadPosRankSum=-1.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,37:69:72:72,0,319 chrVII 1081731 . G A 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.626;DP=82;Dels=0.00;FS=4.905;HaplotypeScore=8.0867;MLEAC=1;MLEAF=0.500;MQ=29.62;MQ0=8;MQRankSum=0.591;QD=1.01;ReadPosRankSum=-0.141;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:63,19:82:99:113,0,757 chrVII 1081734 . A G 669.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.188;DP=84;Dels=0.00;FS=7.833;HaplotypeScore=10.4962;MLEAC=1;MLEAF=0.500;MQ=31.63;MQ0=8;MQRankSum=0.603;QD=7.96;ReadPosRankSum=-0.236;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:29,54:84:99:699,0,188 chrVII 1081752 . C G 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;DP=94;Dels=0.00;FS=5.689;HaplotypeScore=30.3484;MLEAC=1;MLEAF=0.500;MQ=32.65;MQ0=5;MQRankSum=-1.124;QD=1.80;ReadPosRankSum=-0.572;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:44,23:94:99:199,0,671 chrVII 1081767 . C T 448.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.464;DP=98;Dels=0.00;FS=5.020;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.58;MQ0=8;MQRankSum=-2.566;QD=4.57;ReadPosRankSum=-0.428;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:51,47:98:99:478,0,733 chrVII 1081803 . G A 566.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.851;DP=146;Dels=0.00;FS=19.332;HaplotypeScore=5.7588;MLEAC=1;MLEAF=0.500;MQ=37.19;MQ0=13;MQRankSum=-0.357;QD=3.88;ReadPosRankSum=1.412;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:88,58:146:99:596,0,1273 chrVII 1081815 . T C 778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.592;DP=152;Dels=0.00;FS=2.153;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=36.78;MQ0=15;MQRankSum=-4.313;QD=5.12;ReadPosRankSum=0.245;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:57,94:152:99:808,0,1121 chrVII 1081887 . G A 581.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;DP=128;Dels=0.00;FS=33.062;HaplotypeScore=28.3768;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=4;MQRankSum=-3.853;QD=4.54;ReadPosRankSum=-0.384;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:56,69:128:99:611,0,921 chrVII 1081908 . A T 464.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;DP=140;Dels=0.00;FS=82.162;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=-2.799;QD=3.31;ReadPosRankSum=2.778;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:74,66:140:99:494,0,1279 chrVII 1081910 . C T 485.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.171;DP=141;Dels=0.00;FS=81.776;HaplotypeScore=4.5538;MLEAC=1;MLEAF=0.500;MQ=34.08;MQ0=0;MQRankSum=-3.308;QD=3.44;ReadPosRankSum=2.733;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:75,66:141:99:515,0,1243 chrVII 1081912 . C T 513.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.374;DP=144;Dels=0.00;FS=64.339;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=0;MQRankSum=-2.455;QD=3.56;ReadPosRankSum=2.000;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:75,69:144:99:543,0,1212 chrVII 1081936 . A G 533.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.154;DP=154;Dels=0.00;FS=49.378;HaplotypeScore=15.1601;MLEAC=1;MLEAF=0.500;MQ=35.07;MQ0=0;MQRankSum=-1.769;QD=3.46;ReadPosRankSum=-1.769;SB=-2.660e+02 GT:AD:DP:GQ:PL 0/1:79,71:154:99:563,0,1198 chrVII 1081961 . T G 995.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.476;DP=156;Dels=0.00;FS=39.677;HaplotypeScore=19.3022;MLEAC=1;MLEAF=0.500;MQ=37.46;MQ0=0;MQRankSum=2.315;QD=6.38;ReadPosRankSum=-1.803;SB=-5.310e+02 GT:AD:DP:GQ:PL 0/1:75,80:156:99:1025,0,968 chrVII 1081991 . G A 1232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.065;DP=141;Dels=0.00;FS=34.595;HaplotypeScore=54.7654;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=0;MQRankSum=3.649;QD=8.74;ReadPosRankSum=2.040;SB=-5.940e+02 GT:AD:DP:GQ:PL 0/1:60,80:141:99:1262,0,658 chrVII 1082001 . A G 470.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.956;DP=146;Dels=0.00;FS=5.851;HaplotypeScore=74.2232;MLEAC=1;MLEAF=0.500;MQ=42.22;MQ0=0;MQRankSum=1.924;QD=3.22;ReadPosRankSum=-0.351;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:105,39:146:99:500,0,1525 chrVII 1082045 . C T 534.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.045;DP=159;Dels=0.00;FS=4.580;HaplotypeScore=14.8545;MLEAC=1;MLEAF=0.500;MQ=41.37;MQ0=0;MQRankSum=2.875;QD=3.36;ReadPosRankSum=1.428;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:119,39:159:99:564,0,1537 chrVII 1082064 . G A 350.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.550;DP=147;Dels=0.00;FS=8.576;HaplotypeScore=6.5996;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=2;MQRankSum=1.197;QD=2.38;ReadPosRankSum=0.435;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:107,40:147:99:380,0,1507 chrVII 1082069 . C T 388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.891;DP=150;Dels=0.00;FS=10.318;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=2;MQRankSum=0.716;QD=2.59;ReadPosRankSum=0.250;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:108,41:150:99:418,0,1495 chrVII 1082123 . A T 550.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.047;DP=181;Dels=0.00;FS=37.608;HaplotypeScore=9.0524;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=11;MQRankSum=-2.599;QD=3.04;ReadPosRankSum=0.334;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,55:181:99:580,0,1820 chrVII 1082143 . T C 1354.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.053;DP=182;Dels=0.00;FS=1.253;HaplotypeScore=8.7535;MLEAC=1;MLEAF=0.500;MQ=42.41;MQ0=12;MQRankSum=1.795;QD=7.44;ReadPosRankSum=0.049;SB=-7.370e+02 GT:AD:DP:GQ:PL 0/1:84,98:182:99:1384,0,1030 chrVII 1082167 . T C 319.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.986;DP=227;Dels=0.00;FS=99.549;HaplotypeScore=18.7180;MLEAC=1;MLEAF=0.500;MQ=41.90;MQ0=15;MQRankSum=-6.019;QD=1.41;ReadPosRankSum=-1.587;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:176,50:227:99:349,0,2834 chrVII 1082198 . C T 353.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.864;DP=224;Dels=0.00;FS=136.922;HaplotypeScore=15.8951;MLEAC=1;MLEAF=0.500;MQ=39.08;MQ0=18;MQRankSum=-2.992;QD=1.58;ReadPosRankSum=0.183;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:174,48:224:99:383,0,2665 chrVII 1082217 . G A 457.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;DP=212;Dels=0.00;FS=23.711;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=38.09;MQ0=14;MQRankSum=1.051;QD=2.16;ReadPosRankSum=-1.811;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:151,60:212:99:487,0,2481 chrVII 1082235 . C T 404.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;DP=197;Dels=0.00;FS=13.062;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=12;MQRankSum=0.026;QD=2.05;ReadPosRankSum=-2.164;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:139,56:197:99:434,0,2178 chrVII 1082268 . T A,C 2955.42 filter AC=1,1;AF=0.500,0.500;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1,1;MLEAF=0.500,0.500;MQ=40.04;MQ0=5;QD=18.82;SB=-1.633e+03 GT:AD:DP:GQ:PL 1/2:0,28,129:157:37:3015,2636,2588,379,0,37 chrVII 1082338 . G A 778.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.600;DP=219;Dels=0.00;FS=0.566;HaplotypeScore=38.8889;MLEAC=1;MLEAF=0.500;MQ=42.96;MQ0=4;MQRankSum=0.457;QD=3.55;ReadPosRankSum=-1.042;SB=-3.570e+02 GT:AD:DP:GQ:PL 0/1:157,61:219:99:808,0,2213 chrVII 1082358 . G A 723.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.342;DP=232;Dels=0.00;FS=3.356;HaplotypeScore=59.7671;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=6;MQRankSum=-1.695;QD=3.12;ReadPosRankSum=1.831;SB=-4.470e+02 GT:AD:DP:GQ:PL 0/1:165,67:232:99:753,0,2393 chrVII 1082375 . G T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.361;DP=250;Dels=0.00;FS=0.596;HaplotypeScore=36.9677;MLEAC=1;MLEAF=0.500;MQ=39.56;MQ0=6;MQRankSum=-5.521;QD=0.16;ReadPosRankSum=3.882;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:195,53:250:70:70,0,3140 chrVII 1082419 . G A 418.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.707;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.4803;MLEAC=1;MLEAF=0.500;MQ=37.08;MQ0=4;MQRankSum=0.788;QD=2.52;ReadPosRankSum=1.011;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:124,42:166:99:448,0,1518 chrVII 1082469 . A G 433.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;DP=97;Dels=0.00;FS=16.876;HaplotypeScore=46.9173;MLEAC=1;MLEAF=0.500;MQ=37.20;MQ0=3;MQRankSum=0.081;QD=4.46;ReadPosRankSum=1.552;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:59,38:97:99:463,0,482 chrVII 1082513 . G A 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.974;DP=150;Dels=0.00;FS=0.696;HaplotypeScore=84.7518;MLEAC=1;MLEAF=0.500;MQ=41.32;MQ0=5;MQRankSum=-1.218;QD=1.66;ReadPosRankSum=0.760;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:108,40:150:99:279,0,1252 chrVII 1082587 . A G 243.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.437;DP=143;Dels=0.00;FS=9.757;HaplotypeScore=9.6333;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=4;MQRankSum=-6.445;QD=1.70;ReadPosRankSum=-0.267;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:99,42:143:99:273,0,1586 chrVII 1082592 . G A 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=23.4777;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=3;MQRankSum=1.606;QD=14.99;ReadPosRankSum=0.013;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,140:142:99:2161,237,0 chrVII 1082664 . G A 382.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.356;DP=154;Dels=0.00;FS=28.180;HaplotypeScore=14.6795;MLEAC=1;MLEAF=0.500;MQ=41.22;MQ0=6;MQRankSum=-4.701;QD=2.48;ReadPosRankSum=-0.857;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:108,46:154:99:412,0,1748 chrVII 1082673 . C A 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DP=149;Dels=0.00;FS=18.319;HaplotypeScore=40.3926;MLEAC=1;MLEAF=0.500;MQ=41.18;MQ0=6;MQRankSum=-5.716;QD=2.49;ReadPosRankSum=0.222;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:104,45:149:99:401,0,1723 chrVII 1082681 . C A 588.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.107;DP=161;Dels=0.00;FS=0.716;HaplotypeScore=56.4111;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=5;MQRankSum=-5.442;QD=3.65;ReadPosRankSum=0.502;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:102,58:161:99:618,0,1475 chrVII 1082736 . T C 716.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.912;DP=199;Dels=0.00;FS=50.458;HaplotypeScore=43.9250;MLEAC=1;MLEAF=0.500;MQ=29.81;MQ0=1;MQRankSum=-2.452;QD=3.60;ReadPosRankSum=0.544;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:120,79:199:99:746,0,1000 chrVII 1082770 . A G 649.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.627;DP=184;Dels=0.00;FS=16.026;HaplotypeScore=83.8395;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=2;MQRankSum=-0.761;QD=3.53;ReadPosRankSum=0.319;SB=-2.870e+02 GT:AD:DP:GQ:PL 0/1:104,78:184:99:679,0,1002 chrVII 1082775 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=78.8074;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=2;QD=12.17;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,170:171:99:2114,246,0 chrVII 1082793 . C G 279.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=151;Dels=0.00;FS=43.240;HaplotypeScore=15.7623;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=5;MQRankSum=-0.279;QD=1.85;ReadPosRankSum=1.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,29:151:99:309,0,1587 chrVII 1082814 . A G 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.888;DP=130;Dels=0.00;FS=39.202;HaplotypeScore=3.5299;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=10;MQRankSum=0.984;QD=0.43;ReadPosRankSum=-0.714;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,15:130:86:86,0,1432 chrVII 1082819 . T C 1846 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.382;DP=127;Dels=0.00;FS=8.978;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=9;MQRankSum=0.386;QD=14.54;ReadPosRankSum=3.382;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:4,122:127:99:1879,213,0 chrVII 1082848 . A G 185.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.486;DP=128;Dels=0.00;FS=4.513;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=10;MQRankSum=2.125;QD=1.45;ReadPosRankSum=0.155;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:105,23:128:99:215,0,1211 chrVII 1082858 . G T 955.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.220;DP=122;Dels=0.00;FS=3.118;HaplotypeScore=57.1830;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=9;MQRankSum=-1.477;QD=7.83;ReadPosRankSum=1.246;SB=-4.920e+02 GT:AD:DP:GQ:PL 0/1:24,97:122:99:985,0,274 chrVII 1082861 . T C 484.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=37.2400;MLEAC=1;MLEAF=0.500;MQ=27.63;MQ0=9;MQRankSum=1.078;QD=4.03;ReadPosRankSum=1.382;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:68,52:120:99:514,0,641 chrVII 1082879 . G A 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.904;DP=116;Dels=0.00;FS=5.575;HaplotypeScore=43.0307;MLEAC=1;MLEAF=0.500;MQ=31.02;MQ0=7;MQRankSum=-0.129;QD=0.31;ReadPosRankSum=-3.320;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:99,17:116:66:66,0,1112 chrVII 1082883 . A G 338.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;DP=119;Dels=0.01;FS=21.419;HaplotypeScore=50.5331;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=6;MQRankSum=-1.289;QD=2.84;ReadPosRankSum=-0.157;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:72,44:118:99:368,0,878 chrVII 1082885 . C T 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.130;DP=118;Dels=0.01;FS=14.179;HaplotypeScore=54.3626;MLEAC=1;MLEAF=0.500;MQ=32.23;MQ0=6;MQRankSum=-0.348;QD=0.12;ReadPosRankSum=-2.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,20:117:44:44,0,1217 chrVII 1082905 . T C 185.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.862;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=32.6031;MLEAC=1;MLEAF=0.500;MQ=35.80;MQ0=2;MQRankSum=-3.030;QD=1.57;ReadPosRankSum=0.205;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:83,33:118:99:215,0,1463 chrVII 1082935 . T C 694.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.218;DP=109;Dels=0.00;FS=12.930;HaplotypeScore=38.9198;MLEAC=1;MLEAF=0.500;MQ=35.59;MQ0=0;MQRankSum=2.269;QD=6.37;ReadPosRankSum=-1.959;SB=-3.450e+02 GT:AD:DP:GQ:PL 0/1:56,50:109:99:724,0,665 chrVII 1082938 . G A 360.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.063;DP=105;Dels=0.00;FS=1.810;HaplotypeScore=40.2060;MLEAC=1;MLEAF=0.500;MQ=35.07;MQ0=0;MQRankSum=-0.913;QD=3.43;ReadPosRankSum=3.230;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:78,27:105:99:390,0,1018 chrVII 1082972 . G A 809 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=68.3899;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;MQRankSum=-1.097;QD=13.48;ReadPosRankSum=1.617;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:96:842,96,0 chrVII 1082973 . T C 276.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=59;Dels=0.00;FS=1.025;HaplotypeScore=68.3899;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=0;MQRankSum=1.084;QD=4.68;ReadPosRankSum=1.765;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/1:21,38:59:99:306,0,273 chrVII 1082974 . A G 303.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=68.3899;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=0;MQRankSum=0.579;QD=5.14;ReadPosRankSum=2.924;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:24,35:59:99:333,0,296 chrVII 1082976 . T A 324.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=56;Dels=0.00;FS=5.909;HaplotypeScore=67.6792;MLEAC=1;MLEAF=0.500;MQ=29.15;MQ0=0;MQRankSum=-0.398;QD=5.79;ReadPosRankSum=2.011;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:21,35:56:99:354,0,269 chrVII 1082981 . T C 108.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;DP=50;Dels=0.00;FS=76.048;HaplotypeScore=42.5535;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=0;MQRankSum=2.001;QD=2.16;ReadPosRankSum=-2.001;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:31,19:50:99:138,0,356 chrVII 1082991 . G A 323 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.2462;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;QD=8.07;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:356,42,0 chrVII 1083004 . G C 66.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DP=30;Dels=0.00;FS=30.271;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-0.603;QD=2.20;ReadPosRankSum=1.226;SB=-6.295e+01 GT:AD:DP:GQ:PL 0/1:14,16:30:79:96,0,79 chrVII 1083007 . A G 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=35;Dels=0.00;FS=26.664;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=0;MQRankSum=-0.387;QD=2.29;ReadPosRankSum=-0.623;SB=-1.379e+02 GT:AD:DP:GQ:PL 0/1:14,21:35:81:110,0,81 chrVII 1083008 . G C 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DP=38;Dels=0.00;FS=21.096;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=0.800;QD=1.39;ReadPosRankSum=1.815;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,13:38:83:83,0,103 chrVII 1083020 . T G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;DP=48;Dels=0.00;FS=2.635;HaplotypeScore=6.2263;MLEAC=1;MLEAF=0.500;MQ=25.45;MQ0=0;MQRankSum=-0.330;QD=0.60;ReadPosRankSum=0.948;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:30,18:48:59:59,0,173 chrVII 1083057 . A G 675 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=14.7530;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;QD=9.51;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:84:708,84,0 chrVII 1083060 . T C 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.357;DP=74;Dels=0.00;FS=4.253;HaplotypeScore=14.7530;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=0;MQRankSum=-0.930;QD=1.84;ReadPosRankSum=-2.937;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:45,29:74:99:166,0,412 chrVII 1083061 . T G 137.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030;DP=73;Dels=0.00;FS=5.926;HaplotypeScore=24.6640;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=0;MQRankSum=-0.631;QD=1.88;ReadPosRankSum=-2.985;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:43,29:73:99:167,0,409 chrVII 1083065 . A G 133.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DP=68;Dels=0.00;FS=7.847;HaplotypeScore=23.8753;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=0;MQRankSum=0.427;QD=1.96;ReadPosRankSum=2.986;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:52,16:68:99:163,0,407 chrVII 1083066 . A G 146.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.757;DP=68;Dels=0.00;FS=6.240;HaplotypeScore=23.8753;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=0;MQRankSum=-0.967;QD=2.15;ReadPosRankSum=-3.993;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:39,29:68:99:176,0,404 chrVII 1083071 . C T 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;DP=48;Dels=0.00;FS=7.928;HaplotypeScore=75.7314;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=0;MQRankSum=0.991;QD=2.73;ReadPosRankSum=2.846;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,19:48:99:161,0,206 chrVII 1083086 . G A 436 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=8.23;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:54:469,54,0 chrVII 1083095 . T C 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-4.058;DP=47;Dels=0.00;FS=6.394;HaplotypeScore=77.5998;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;MQRankSum=1.319;QD=5.91;ReadPosRankSum=0.389;SB=-9.997e+00 GT:AD:DP:GQ:PL 1/1:11,36:47:36:311,36,0 chrVII 1083104 . G A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=33.4565;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=0;MQRankSum=1.348;QD=0.47;ReadPosRankSum=2.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,7:74:65:65,0,189 chrVII 1083106 . A C,T 237.22 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=22.6067;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.56;MQ0=0;QD=3.34;SB=-1.252e+02 GT:AD:DP:GQ:PL 1/2:0,33,38:71:40:297,70,40,227,0,218 chrVII 1083108 . G C 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;DP=74;Dels=0.00;FS=11.240;HaplotypeScore=46.2326;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=0;MQRankSum=1.062;QD=2.64;ReadPosRankSum=6.776;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:44,30:74:59:225,0,59 chrVII 1083109 . C T 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.322;DP=76;Dels=0.00;FS=10.344;HaplotypeScore=48.1180;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=0;MQRankSum=-1.595;QD=1.28;ReadPosRankSum=3.397;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,23:76:99:127,0,100 chrVII 1083111 . T C 181.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.308;DP=79;Dels=0.00;FS=14.254;HaplotypeScore=47.1498;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=0;MQRankSum=0.434;QD=2.29;ReadPosRankSum=6.067;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:47,32:79:63:211,0,63 chrVII 1083121 . C T 184.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.671;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=33.2443;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=0;MQRankSum=1.284;QD=1.96;ReadPosRankSum=2.019;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:50,44:94:99:214,0,131 chrVII 1083127 . A G 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;DP=102;Dels=0.00;FS=22.235;HaplotypeScore=33.5365;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=0;MQRankSum=-0.143;QD=1.86;ReadPosRankSum=1.273;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,39:102:99:220,0,205 chrVII 1083136 . A G 488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=32.7557;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;MQRankSum=0.636;QD=5.36;ReadPosRankSum=2.396;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:57:521,57,0 chrVII 1083137 . T C 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;DP=92;Dels=0.00;FS=33.142;HaplotypeScore=30.5027;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=0;MQRankSum=-1.317;QD=1.36;ReadPosRankSum=1.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,29:92:99:155,0,287 chrVII 1083143 . T A 368.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;DP=97;Dels=0.00;FS=91.204;HaplotypeScore=63.6983;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=-2.202;QD=3.79;ReadPosRankSum=0.559;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:16,81:97:99:398,0,100 chrVII 1083148 . T C 368.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;DP=98;Dels=0.00;FS=88.194;HaplotypeScore=34.6967;MLEAC=1;MLEAF=0.500;MQ=26.94;MQ0=0;MQRankSum=-1.123;QD=3.76;ReadPosRankSum=1.348;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:19,79:98:99:398,0,106 chrVII 1083152 . G A 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.088;DP=101;Dels=0.00;FS=10.680;HaplotypeScore=35.6701;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=1.170;QD=1.13;ReadPosRankSum=0.708;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:69,31:101:99:144,0,460 chrVII 1083172 . A G 842.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.399;DP=128;Dels=0.00;FS=69.997;HaplotypeScore=18.1980;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=-1.519;QD=6.58;ReadPosRankSum=-1.276;SB=-9.240e+02 GT:AD:DP:GQ:PL 0/1:26,102:128:99:872,0,124 chrVII 1083181 . C T 1420 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=43.5282;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=9.79;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:1453,159,0 chrVII 1083184 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;DP=152;Dels=0.00;FS=0.871;HaplotypeScore=25.9980;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=0;MQRankSum=1.733;QD=0.07;ReadPosRankSum=-0.123;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:129,23:152:41:41,0,1056 chrVII 1083187 . C T 533.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.852;DP=157;Dels=0.00;FS=5.940;HaplotypeScore=47.7525;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=0;MQRankSum=2.979;QD=3.39;ReadPosRankSum=-0.333;SB=-4.040e+02 GT:AD:DP:GQ:PL 0/1:85,72:157:99:563,0,601 chrVII 1083193 . G A 1558 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.454;DP=167;Dels=0.00;FS=16.919;HaplotypeScore=115.6534;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;MQRankSum=1.125;QD=9.33;ReadPosRankSum=0.947;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:4,163:167:99:1591,157,0 chrVII 1083199 . T A 263.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DP=185;Dels=0.00;FS=0.713;HaplotypeScore=144.5217;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=0.618;QD=1.42;ReadPosRankSum=3.314;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:99,55:185:99:293,0,811 chrVII 1083201 . C G 631.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.168;DP=186;Dels=0.00;FS=6.643;HaplotypeScore=167.1780;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=0.529;QD=3.39;ReadPosRankSum=3.840;SB=-5.150e+02 GT:AD:DP:GQ:PL 0/1:55,88:186:99:661,0,419 chrVII 1083222 . T G 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.748;DP=224;Dels=0.00;FS=0.819;HaplotypeScore=232.9695;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=2.500;QD=1.02;ReadPosRankSum=0.606;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:180,44:224:99:259,0,1189 chrVII 1083226 . C A 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.475;DP=222;Dels=0.00;FS=44.346;HaplotypeScore=332.7187;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=1.556;QD=0.93;ReadPosRankSum=-0.189;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,57:222:99:236,0,1066 chrVII 1083229 . G C 882.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.532;DP=210;Dels=0.00;FS=56.566;HaplotypeScore=262.5241;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=2.169;QD=4.20;ReadPosRankSum=2.015;SB=-7.580e+02 GT:AD:DP:GQ:PL 0/1:59,117:210:99:912,0,250 chrVII 1083231 . G A,C 704.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=7.373;DP=210;Dels=0.00;FS=70.989;HaplotypeScore=124.1585;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.31;MQ0=0;MQRankSum=0.523;QD=3.35;ReadPosRankSum=1.539;SB=-6.935e+02 GT:AD:DP:GQ:PL 1/2:59,69,82:210:99:764,316,602,146,0,409 chrVII 1083234 . T C 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.537;DP=214;Dels=0.00;FS=5.079;HaplotypeScore=235.8581;MLEAC=1;MLEAF=0.500;MQ=27.06;MQ0=0;MQRankSum=2.816;QD=0.50;ReadPosRankSum=3.248;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:179,35:214:99:136,0,1158 chrVII 1083235 . G A 431.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.454;DP=204;Dels=0.00;FS=60.470;HaplotypeScore=235.8581;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=0;MQRankSum=1.118;QD=2.11;ReadPosRankSum=0.138;SB=-5.340e+02 GT:AD:DP:GQ:PL 0/1:132,72:204:99:461,0,743 chrVII 1083237 . G T 791.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=9.212;DP=205;Dels=0.00;FS=41.320;HaplotypeScore=194.4425;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=0;MQRankSum=2.401;QD=3.86;ReadPosRankSum=2.408;SB=-6.750e+02 GT:AD:DP:GQ:PL 0/1:98,107:205:99:821,0,414 chrVII 1083238 . A G 1409 SnpCluster AC=2;AF=1.00;AN=2;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=190.4679;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=6.98;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,194:202:99:1442,168,0 chrVII 1083240 . C T 798.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.439;DP=203;Dels=0.00;FS=41.044;HaplotypeScore=158.9333;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=2.631;QD=3.93;ReadPosRankSum=1.650;SB=-6.170e+02 GT:AD:DP:GQ:PL 0/1:96,107:203:99:828,0,427 chrVII 1083244 . C G 649.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.351;DP=235;Dels=0.00;FS=4.243;HaplotypeScore=123.2714;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=2.312;QD=2.76;ReadPosRankSum=-1.482;SB=-4.640e+02 GT:AD:DP:GQ:PL 0/1:110,125:235:99:679,0,515 chrVII 1083249 . A G 636.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.135;DP=217;Dels=0.00;FS=43.490;HaplotypeScore=118.5934;MLEAC=1;MLEAF=0.500;MQ=27.24;MQ0=0;MQRankSum=1.708;QD=2.93;ReadPosRankSum=-1.803;SB=-6.900e+02 GT:AD:DP:GQ:PL 0/1:94,123:217:99:666,0,417 chrVII 1083251 . C T 1309 SnpCluster AC=2;AF=1.00;AN=2;DP=213;Dels=0.00;FS=0.000;HaplotypeScore=111.4416;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;QD=6.15;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,213:213:99:1342,156,0 chrVII 1083253 . T C 976.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.096;DP=217;Dels=0.00;FS=6.626;HaplotypeScore=116.8938;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;MQRankSum=-0.948;QD=4.50;ReadPosRankSum=0.662;SB=-7.245e+02 GT:AD:DP:GQ:PL 1/1:39,177:217:4:1007,4,0 chrVII 1083257 . T C 291.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.298;DP=225;Dels=0.00;FS=2.647;HaplotypeScore=119.7645;MLEAC=1;MLEAF=0.500;MQ=27.36;MQ0=0;MQRankSum=0.019;QD=1.29;ReadPosRankSum=2.784;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:162,63:225:99:321,0,737 chrVII 1083259 . C T 302.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.989;DP=221;Dels=0.00;FS=2.666;HaplotypeScore=249.5291;MLEAC=1;MLEAF=0.500;MQ=27.33;MQ0=0;MQRankSum=0.689;QD=1.37;ReadPosRankSum=2.469;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:158,62:221:99:332,0,692 chrVII 1083262 . T A 555.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.522;DP=219;Dels=0.00;FS=8.922;HaplotypeScore=601.4632;MLEAC=1;MLEAF=0.500;MQ=27.31;MQ0=0;MQRankSum=2.540;QD=2.53;ReadPosRankSum=-2.416;SB=-4.690e+02 GT:AD:DP:GQ:PL 0/1:95,124:219:99:585,0,402 chrVII 1083273 . C A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DP=213;Dels=0.00;FS=6.728;HaplotypeScore=73.2453;MLEAC=1;MLEAF=0.500;MQ=27.08;MQ0=0;MQRankSum=2.809;QD=0.20;ReadPosRankSum=1.315;SB=-7.889e-03 GT:AD:DP:GQ:PL 0/1:186,27:213:32:73,0,32 chrVII 1083275 . C G 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;DP=220;Dels=0.00;FS=44.867;HaplotypeScore=75.2096;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=0;MQRankSum=-0.810;QD=0.72;ReadPosRankSum=-0.989;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,64:220:99:189,0,624 chrVII 1083282 . T C 312.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.566;DP=245;Dels=0.00;FS=3.858;HaplotypeScore=121.8225;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=3.229;QD=1.27;ReadPosRankSum=4.666;SB=-2.380e+02 GT:AD:DP:GQ:PL 0/1:139,106:245:99:342,0,628 chrVII 1083286 . G T 223.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.365;DP=236;Dels=0.00;FS=7.119;HaplotypeScore=52.5843;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=0.461;QD=0.94;ReadPosRankSum=-3.272;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:186,50:236:99:253,0,886 chrVII 1083299 . G A 686.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.158;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=81.7021;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=2;MQRankSum=-0.220;QD=3.35;ReadPosRankSum=0.004;SB=-3.430e+02 GT:AD:DP:GQ:PL 0/1:78,125:204:99:716,0,228 chrVII 1083316 . A C,T 629.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.336;DP=181;Dels=0.00;FS=7.776;HaplotypeScore=22.8097;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.31;MQ0=3;MQRankSum=0.739;QD=3.48;ReadPosRankSum=-1.617;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/2:15,105,61:181:99:689,126,269,369,0,545 chrVII 1083325 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.215;DP=164;Dels=0.00;FS=7.948;HaplotypeScore=73.6596;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=9;MQRankSum=1.792;QD=0.18;ReadPosRankSum=-3.663;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:119,45:164:60:60,0,808 chrVII 1083335 . A C 378.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;DP=144;Dels=0.00;FS=33.933;HaplotypeScore=72.4203;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=11;MQRankSum=-1.551;QD=2.63;ReadPosRankSum=-3.365;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:57,87:144:99:408,0,474 chrVII 1083340 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.666;DP=143;Dels=0.00;FS=1.826;HaplotypeScore=86.0751;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=11;MQRankSum=1.927;QD=0.26;ReadPosRankSum=-3.956;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:112,31:143:67:67,0,803 chrVII 1083364 . T C 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;DP=99;Dels=0.00;FS=30.762;HaplotypeScore=28.7696;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=11;MQRankSum=-1.327;QD=2.76;ReadPosRankSum=-1.669;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:51,48:99:99:303,0,363 chrVII 1083378 . G T 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.458;DP=59;Dels=0.00;FS=13.745;HaplotypeScore=6.3409;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=11;MQRankSum=2.437;QD=4.92;ReadPosRankSum=-0.138;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:27,32:59:99:320,0,105 chrVII 1083404 . T G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=28;Dels=0.00;FS=2.350;HaplotypeScore=5.7182;MLEAC=1;MLEAF=0.500;MQ=19.48;MQ0=9;MQRankSum=0.150;QD=1.54;ReadPosRankSum=0.750;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:13,15:28:39:73,0,39 chrVII 1083423 . G A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DP=16;Dels=0.00;FS=2.115;HaplotypeScore=3.7669;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=0;MQRankSum=1.059;QD=2.81;ReadPosRankSum=1.588;SB=-5.900e+01 GT:AD:DP:GQ:PL 0/1:9,7:16:72:75,0,72 chrVII 1083425 . G A 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.983;DP=16;Dels=0.00;FS=5.193;HaplotypeScore=3.7669;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=0;MQRankSum=1.030;QD=1.13;ReadPosRankSum=0.705;SB=-3.200e+01 GT:AD:DP:GQ:PL 0/1:10,6:16:48:48,0,96 chrVII 1083426 . G A 116.79 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.7669;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=0;MQRankSum=0.116;QD=7.79;ReadPosRankSum=-1.504;SB=-1.424e+02 GT:AD:DP:GQ:PL 0/1:1,14:15:4:146,0,4 chrVII 1083430 . G A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;DP=15;Dels=0.00;FS=5.021;HaplotypeScore=3.7669;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=0;MQRankSum=1.237;QD=1.14;ReadPosRankSum=-0.295;SB=-3.400e+01 GT:AD:DP:GQ:PL 0/1:9,6:15:47:47,0,100 chrVII 1083434 . G A 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=14;Dels=0.00;FS=5.756;HaplotypeScore=2.7736;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=0;MQRankSum=0.800;QD=1.22;ReadPosRankSum=-0.133;SB=-1.100e+01 GT:AD:DP:GQ:PL 0/1:9,5:14:47:47,0,101 chrVII 1083467 . T C 226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.22;MQ0=0;MQRankSum=-1.734;QD=11.30;ReadPosRankSum=1.561;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:33:259,33,0 chrVII 1083474 . A G 316 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=0;QD=11.29;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:45:349,45,0 chrVII 1083486 . G A 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DP=56;Dels=0.00;FS=34.042;HaplotypeScore=14.0468;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=0;MQRankSum=-1.805;QD=2.80;ReadPosRankSum=-1.333;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,16:56:99:187,0,376 chrVII 1083498 . A G 1507 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.7340;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=18.16;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1540,188,0 chrVII 1083506 . G T 414.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=17.5687;MLEAC=1;MLEAF=0.500;MQ=28.36;MQ0=0;MQRankSum=-3.017;QD=4.10;ReadPosRankSum=0.680;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:62,39:101:99:444,0,1006 chrVII 1083509 . T C 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.261;DP=106;Dels=0.00;FS=14.360;HaplotypeScore=21.5353;MLEAC=1;MLEAF=0.500;MQ=28.34;MQ0=0;MQRankSum=-0.369;QD=0.32;ReadPosRankSum=-2.711;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,14:106:64:64,0,1528 chrVII 1083515 . A G 1982 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.886;DP=145;Dels=0.00;FS=1.326;HaplotypeScore=52.5480;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=1.289;QD=13.67;ReadPosRankSum=3.360;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:15,130:145:64:2015,64,0 chrVII 1083540 . G A 2735.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;DP=285;Dels=0.00;FS=9.926;HaplotypeScore=31.4380;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=0;MQRankSum=0.344;QD=9.60;ReadPosRankSum=-0.520;SB=-1.171e+03 GT:AD:DP:GQ:PL 0/1:110,173:285:99:2765,0,1662 chrVII 1083578 . A G 724.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DP=566;Dels=0.00;FS=2.414;HaplotypeScore=142.7921;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=1;MQRankSum=2.516;QD=1.28;ReadPosRankSum=2.897;SB=-3.080e+02 GT:AD:DP:GQ:PL 0/1:468,95:566:99:754,0,7949 chrVII 1083596 . A T 2105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.510;DP=612;Dels=0.00;FS=1.382;HaplotypeScore=111.2993;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=1;MQRankSum=-2.603;QD=3.44;ReadPosRankSum=-5.137;SB=-1.296e+03 GT:AD:DP:GQ:PL 0/1:403,209:612:99:2135,0,7503 chrVII 1083612 . T C 3559.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-13.112;DP=565;Dels=0.00;FS=2.292;HaplotypeScore=258.0131;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=3;MQRankSum=2.385;QD=6.30;ReadPosRankSum=0.633;SB=-1.190e+03 GT:AD:DP:GQ:PL 0/1:341,222:565:99:3559,0,5311 chrVII 1083619 . G A 1287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.512;DP=507;Dels=0.00;FS=3.063;HaplotypeScore=451.5378;MLEAC=1;MLEAF=0.500;MQ=26.72;MQ0=3;MQRankSum=-7.843;QD=2.54;ReadPosRankSum=1.846;SB=-8.180e+02 GT:AD:DP:GQ:PL 0/1:340,167:507:99:1317,0,6161 chrVII 1083624 . A T 5300.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.046;DP=490;Dels=0.00;FS=14.040;HaplotypeScore=341.5770;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=3;MQRankSum=-1.679;QD=10.82;ReadPosRankSum=-0.261;SB=-2.095e+03 GT:AD:DP:GQ:PL 0/1:144,341:490:99:5300,0,1819 chrVII 1083637 . A G 1103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.199;DP=412;Dels=0.00;FS=10.560;HaplotypeScore=178.7879;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=3;MQRankSum=-6.385;QD=2.68;ReadPosRankSum=3.499;SB=-6.770e+02 GT:AD:DP:GQ:PL 0/1:300,112:412:99:1133,0,5113 chrVII 1083694 . A G 179.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.656;DP=50;Dels=0.00;FS=22.263;HaplotypeScore=51.1726;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=5;MQRankSum=1.050;QD=3.58;ReadPosRankSum=-1.549;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:19,28:50:27:212,27,0 chrVII 1083697 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=55.6551;MLEAC=1;MLEAF=0.500;MQ=23.58;MQ0=5;MQRankSum=-0.725;QD=0.94;ReadPosRankSum=0.857;SB=-2.749e+02 GT:AD:DP:GQ:PL 0/1:4,42:47:52:74,0,52 chrVII 1083705 . A C,T 212.11 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.555;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=33.2168;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.43;MQ0=4;MQRankSum=-1.111;QD=4.93;ReadPosRankSum=1.644;SB=-1.281e+02 GT:AD:DP:GQ:PL 1/2:1,33,9:43:43:272,70,43,202,0,193 chrVII 1083706 . T C 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;DP=42;Dels=0.00;FS=5.192;HaplotypeScore=37.1824;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=4;MQRankSum=1.546;QD=0.95;ReadPosRankSum=-2.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,4:42:70:70,0,164 chrVII 1083725 . C T 49.97 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=13.0220;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=4;QD=2.27;SB=-5.485e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:9:82,9,0 chrVII 1083754 . C A 54.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=15;Dels=0.00;FS=14.472;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=2;MQRankSum=1.589;QD=3.66;ReadPosRankSum=0.572;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:4,6:15:9:87,9,0 chrVII 1083765 . C T 118.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=6.95;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:151,18,0 chrVII 1083769 . A G 132.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=0;QD=7.77;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:165,18,0 chrVII 1083781 . G A 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;DP=39;Dels=0.00;FS=20.138;HaplotypeScore=9.7340;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=1;MQRankSum=0.246;QD=4.41;ReadPosRankSum=-2.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,26:39:99:202,0,196 chrVII 1083785 . T G 390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;DP=47;Dels=0.00;FS=37.371;HaplotypeScore=23.0952;MLEAC=1;MLEAF=0.500;MQ=24.93;MQ0=1;MQRankSum=3.489;QD=8.30;ReadPosRankSum=2.098;SB=-3.079e-03 GT:AD:DP:GQ:PL 0/1:13,34:47:77:420,0,77 chrVII 1083803 . C T 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.341;DP=84;Dels=0.00;FS=12.113;HaplotypeScore=47.2686;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=1;MQRankSum=1.630;QD=2.49;ReadPosRankSum=0.454;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,18:84:99:239,0,747 chrVII 1083807 . C T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;DP=94;Dels=0.00;FS=9.861;HaplotypeScore=41.3167;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=1;MQRankSum=0.500;QD=0.28;ReadPosRankSum=2.337;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:80,14:94:56:56,0,1081 chrVII 1083842 . T C 243.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;DP=235;Dels=0.00;FS=32.887;HaplotypeScore=103.0584;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=8;MQRankSum=4.313;QD=1.03;ReadPosRankSum=0.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:196,39:235:99:273,0,2987 chrVII 1083846 . A C 1696.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.599;DP=246;Dels=0.00;FS=91.373;HaplotypeScore=75.5751;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=9;MQRankSum=4.850;QD=6.89;ReadPosRankSum=0.769;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,112:246:99:1726,0,1724 chrVII 1083871 . T C 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;DP=328;Dels=0.00;FS=61.170;HaplotypeScore=28.8099;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=7;MQRankSum=3.542;QD=1.12;ReadPosRankSum=2.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:275,53:328:99:398,0,3914 chrVII 1083875 . A C 5384.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=323;Dels=0.00;FS=0.000;HaplotypeScore=32.7533;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=7;MQRankSum=1.186;QD=16.67;ReadPosRankSum=1.720;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,298:323:99:5384,620,0 chrVII 1083888 . C T 6766.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=5.4087;MLEAC=2;MLEAF=1.00;MQ=25.61;MQ0=6;QD=19.61;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,344:345:99:6766,765,0 chrVII 1083894 . G T 893.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.147;DP=369;Dels=0.01;FS=81.662;HaplotypeScore=15.0731;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=6;MQRankSum=0.397;QD=2.42;ReadPosRankSum=-2.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,99:366:99:923,0,4150 chrVII 1083895 . C A 974.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.284;DP=372;Dels=0.01;FS=118.327;HaplotypeScore=15.0731;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=7;MQRankSum=-0.286;QD=2.62;ReadPosRankSum=-1.683;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:272,96:369:99:1004,0,4167 chrVII 1083906 . G C 300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DP=361;Dels=0.00;FS=74.751;HaplotypeScore=396.6615;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=7;MQRankSum=5.578;QD=0.83;ReadPosRankSum=-0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:305,55:361:99:330,0,4422 chrVII 1083908 . G A 318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.867;DP=357;Dels=0.00;FS=77.872;HaplotypeScore=430.0874;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=7;MQRankSum=4.732;QD=0.89;ReadPosRankSum=-0.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:302,55:357:99:348,0,4408 chrVII 1083916 . A G 613.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;DP=354;Dels=0.05;FS=246.966;HaplotypeScore=476.7633;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=5;MQRankSum=-0.426;QD=1.73;ReadPosRankSum=1.714;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,76:338:99:643,0,2312 chrVII 1083918 . T C 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.123;DP=363;Dels=0.00;FS=0.682;HaplotypeScore=422.2825;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=5;MQRankSum=1.607;QD=0.07;ReadPosRankSum=4.916;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:325,38:363:56:56,0,4728 chrVII 1083920 . C T 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.730;DP=361;Dels=0.01;FS=0.000;HaplotypeScore=510.9127;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=5;MQRankSum=1.532;QD=0.14;ReadPosRankSum=5.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:320,38:359:80:80,0,4618 chrVII 1083925 . T A 306.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DP=342;Dels=0.00;FS=127.999;HaplotypeScore=446.5748;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=5;MQRankSum=-0.996;QD=0.89;ReadPosRankSum=1.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:267,75:342:99:336,0,4415 chrVII 1083926 . T A 314.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.570;DP=345;Dels=0.00;FS=131.213;HaplotypeScore=496.7999;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=4;MQRankSum=-0.532;QD=0.91;ReadPosRankSum=0.974;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:271,74:345:99:344,0,4229 chrVII 1083934 . A C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;DP=316;Dels=0.00;FS=0.000;HaplotypeScore=208.3414;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=2;MQRankSum=4.189;QD=0.08;ReadPosRankSum=0.742;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:287,22:316:54:54,0,2967 chrVII 1083946 . G A 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.697;DP=277;Dels=0.00;FS=25.485;HaplotypeScore=239.1115;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=1;MQRankSum=3.705;QD=0.49;ReadPosRankSum=-0.891;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,46:277:99:166,0,3543 chrVII 1083951 . G A 747.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.900;DP=250;Dels=0.00;FS=89.464;HaplotypeScore=169.9566;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=1;MQRankSum=1.357;QD=2.99;ReadPosRankSum=-1.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,85:250:99:777,0,2362 chrVII 1083953 . G A 730.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.808;DP=241;Dels=0.00;FS=131.339;HaplotypeScore=165.8285;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=2;MQRankSum=1.487;QD=3.03;ReadPosRankSum=-0.870;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,79:241:99:760,0,1987 chrVII 1083956 . A T 74.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DP=231;Dels=0.00;FS=40.565;HaplotypeScore=164.8391;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=2;MQRankSum=2.508;QD=0.32;ReadPosRankSum=-0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:183,35:231:99:104,0,2732 chrVII 1083968 . C G 956.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;DP=193;Dels=0.00;FS=1.870;HaplotypeScore=132.2827;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=2;MQRankSum=1.441;QD=4.95;ReadPosRankSum=1.048;SB=-5.520e+02 GT:AD:DP:GQ:PL 0/1:33,71:193:99:986,0,355 chrVII 1083975 . T G 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DP=168;Dels=0.00;FS=37.698;HaplotypeScore=162.6618;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=3;MQRankSum=1.631;QD=0.57;ReadPosRankSum=0.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,26:168:99:126,0,1714 chrVII 1083992 . T C 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;DP=94;Dels=0.00;FS=4.422;HaplotypeScore=25.3406;MLEAC=1;MLEAF=0.500;MQ=25.79;MQ0=4;MQRankSum=1.277;QD=3.15;ReadPosRankSum=-0.745;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:66,28:94:99:326,0,783 chrVII 1084006 . C T 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;DP=65;Dels=0.00;FS=28.612;HaplotypeScore=12.4580;MLEAC=1;MLEAF=0.500;MQ=24.45;MQ0=4;MQRankSum=1.294;QD=0.60;ReadPosRankSum=0.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,11:65:69:69,0,613 chrVII 1084008 . G A 837 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DP=62;Dels=0.00;FS=5.082;HaplotypeScore=12.4580;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=4;MQRankSum=0.478;QD=13.50;ReadPosRankSum=-0.418;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:80:870,80,0 chrVII 1084026 . G A 291.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DP=30;Dels=0.00;FS=9.556;HaplotypeScore=5.6711;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=4;MQRankSum=-0.433;QD=9.72;ReadPosRankSum=1.203;SB=-1.445e+02 GT:AD:DP:GQ:PL 0/1:2,28:30:1:320,0,1 chrVII 1084034 . G A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DP=22;Dels=0.00;FS=2.884;HaplotypeScore=6.6572;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=4;MQRankSum=0.063;QD=0.52;ReadPosRankSum=-0.441;SB=0.011 GT:AD:DP:GQ:PL 0/1:18,3:22:41:41,0,162 chrVII 1084103 . A G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=1;MLEAF=0.500;MQ=19.76;MQ0=1;MQRankSum=-1.001;QD=3.10;ReadPosRankSum=0.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:4,6:10:28:61,0,28 chrVII 1084114 . T G 114.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=19.76;MQ0=1;QD=11.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:18:147,18,0 chrVII 1084133 . A G 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=1;MQRankSum=-0.278;QD=3.92;ReadPosRankSum=0.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,7:12:36:77,0,36 chrVII 1084141 . A G 86.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.166;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=14.4721;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=0;MQRankSum=2.166;QD=8.63;ReadPosRankSum=0.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,7:10:15:119,15,0 chrVII 1084150 . G T 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=11.9639;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=5.45;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:120,15,0 chrVII 1084152 . C G 87.26 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=7.4420;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=5.45;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:120,15,0 chrVII 1084160 . G A 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=6.8141;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=0;MQRankSum=-0.217;QD=2.17;ReadPosRankSum=0.713;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,13:23:80:80,0,89 chrVII 1084162 . T G 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=6.8141;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=0;MQRankSum=0.462;QD=1.09;ReadPosRankSum=0.339;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,12:23:55:55,0,116 chrVII 1084168 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=6.8141;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=0.671;QD=0.66;ReadPosRankSum=0.752;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,10:32:51:51,0,101 chrVII 1084181 . A G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=13.6658;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=0;MQRankSum=0.718;QD=2.38;ReadPosRankSum=1.850;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:9,22:37:54:118,0,54 chrVII 1084191 . A G 246 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=17.6055;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;MQRankSum=0.912;QD=6.47;ReadPosRankSum=0.638;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,37:38:33:279,33,0 chrVII 1084199 . C T 261 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=11.5527;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=0;QD=6.37;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:294,33,0 chrVII 1084200 . A T 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.7897;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=1.475;QD=2.81;ReadPosRankSum=1.015;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,26:41:79:145,0,79 chrVII 1084204 . G A 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=26.9611;MLEAC=1;MLEAF=0.500;MQ=25.00;MQ0=0;MQRankSum=2.513;QD=2.55;ReadPosRankSum=0.875;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,30:47:83:150,0,83 chrVII 1084222 . G A 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=77.8708;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=0;MQRankSum=0.962;QD=3.27;ReadPosRankSum=1.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,23:43:91:174,0,91 chrVII 1084224 . T C 170.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.625;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=77.8708;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=0;MQRankSum=0.529;QD=3.86;ReadPosRankSum=2.165;SB=0.172 GT:AD:DP:GQ:PL 1/1:2,24:44:24:203,24,0 chrVII 1084225 . G A 154.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=69.5319;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=0;MQRankSum=1.992;QD=2.91;ReadPosRankSum=3.708;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:29,24:53:19:184,0,19 chrVII 1084227 . G T 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=69.7615;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=0;MQRankSum=0.813;QD=2.46;ReadPosRankSum=3.654;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,24:53:99:163,0,144 chrVII 1084231 . G T 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=78.5792;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=0;MQRankSum=-0.261;QD=3.68;ReadPosRankSum=2.032;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:13,45:58:37:247,0,37 chrVII 1084253 . G A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=96.7374;MLEAC=1;MLEAF=0.500;MQ=25.60;MQ0=0;MQRankSum=2.285;QD=1.55;ReadPosRankSum=-0.014;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,21:66:99:132,0,286 chrVII 1084257 . G T 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=128.1033;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=0.990;QD=1.56;ReadPosRankSum=-0.940;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,19:62:99:127,0,231 chrVII 1084276 . A G 379.03 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.066;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=72.3519;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=0;MQRankSum=0.690;QD=5.26;ReadPosRankSum=-0.761;SB=-3.377e-02 GT:AD:DP:GQ:PL 0/1:14,58:72:19:409,0,19 chrVII 1084284 . G A 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.846;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=54.7871;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=1.285;QD=0.28;ReadPosRankSum=0.657;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,8:68:49:49,0,364 chrVII 1084285 . A G 498 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=80.4431;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;QD=7.32;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:60:531,60,0 chrVII 1084297 . T G 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.491;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=55.2459;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=0.120;QD=4.53;ReadPosRankSum=-0.558;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:9,48:58:60:293,0,60 chrVII 1084298 . T A 270.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=52.3464;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=0;MQRankSum=-0.408;QD=4.66;ReadPosRankSum=-0.472;SB=-6.520e-03 GT:AD:DP:GQ:PL 0/1:9,49:58:65:300,0,65 chrVII 1084318 . G C 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=18.4864;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=1.040;QD=1.18;ReadPosRankSum=0.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,13:50:89:89,0,405 chrVII 1084319 . A T 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=32.8504;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=1.019;QD=4.76;ReadPosRankSum=0.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,24:50:99:268,0,250 chrVII 1084321 . G A 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=38.3081;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=0;MQRankSum=-0.155;QD=1.30;ReadPosRankSum=2.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,13:50:95:95,0,406 chrVII 1084329 . G T 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=27.6161;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.337;QD=2.10;ReadPosRankSum=-1.099;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,17:48:99:131,0,293 chrVII 1084330 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=23.5228;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-0.801;QD=2.00;ReadPosRankSum=-1.349;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,19:48:99:126,0,298 chrVIII 1569 . G A 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=7;Dels=0.00;FS=10.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.79;MQ0=1;MQRankSum=1.231;QD=7.00;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,4:7:9:81,9,0 chrVIII 1754 . T C 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.08;MQ0=7;QD=3.82;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:2,9:11:9:74,9,0 chrVIII 1756 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.14;MQ0=7;QD=4.00;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:2,10:12:9:80,9,0 chrVIII 1763 . G A 52.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.70;MQ0=14;MQRankSum=0.736;QD=2.65;ReadPosRankSum=0.736;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:3,17:20:9:85,9,0 chrVIII 1770 . C T 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.44;MQ0=36;MQRankSum=-0.290;QD=0.87;ReadPosRankSum=-0.290;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:3,45:48:9:74,9,0 chrVIII 1780 . C A 46.97 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.73;MQ0=44;QD=0.80;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,59:59:9:79,9,0 chrVIII 5185 . T C 474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.150;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9748;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=1.653;QD=18.96;ReadPosRankSum=2.254;SB=-9.637e+01 GT:AD:DP:GQ:PL 1/1:2,23:25:60:507,60,0 chrVIII 5225 . A G 568 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.632;DP=47;Dels=0.00;FS=18.978;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=14;MQRankSum=2.837;QD=12.09;ReadPosRankSum=3.490;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:11,36:47:69:601,69,0 chrVIII 5232 . C T 499.46 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=58;Dels=0.00;FS=20.121;HaplotypeScore=3.3527;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=15;MQRankSum=3.937;QD=8.61;ReadPosRankSum=5.339;SB=-1.725e+02 GT:AD:DP:GQ:PL 0/1:24,34:58:1:528,0,1 chrVIII 5292 . C A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=94;Dels=0.00;FS=2.054;HaplotypeScore=24.2822;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=37;MQRankSum=0.480;QD=0.17;ReadPosRankSum=-1.487;SB=-3.095e+01 GT:AD:DP:GQ:PL 0/1:78,15:94:46:46,0,305 chrVIII 5298 . C T 295.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.171;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=33.1881;MLEAC=1;MLEAF=0.500;MQ=12.62;MQ0=38;MQRankSum=-1.068;QD=3.11;ReadPosRankSum=0.724;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:12,83:95:27:325,0,27 chrVIII 5306 . C T 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DP=91;Dels=0.00;FS=5.938;HaplotypeScore=19.1856;MLEAC=1;MLEAF=0.500;MQ=12.46;MQ0=36;MQRankSum=1.042;QD=0.49;ReadPosRankSum=0.852;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:75,16:91:75:75,0,260 chrVIII 5331 . C T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=70;Dels=0.00;FS=18.130;HaplotypeScore=35.1650;MLEAC=1;MLEAF=0.500;MQ=12.53;MQ0=26;MQRankSum=0.898;QD=0.70;ReadPosRankSum=0.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,12:70:79:79,0,206 chrVIII 5333 . G A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.775;DP=65;Dels=0.00;FS=8.955;HaplotypeScore=35.1650;MLEAC=1;MLEAF=0.500;MQ=12.74;MQ0=23;MQRankSum=1.945;QD=0.80;ReadPosRankSum=2.689;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:50,15:65:82:82,0,219 chrVIII 5385 . T A 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.627;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=14.6571;MLEAC=1;MLEAF=0.500;MQ=13.46;MQ0=11;MQRankSum=-1.398;QD=1.83;ReadPosRankSum=0.839;SB=-6.197e-03 GT:AD:DP:GQ:PL 0/1:3,24:30:50:85,0,50 chrVIII 5390 . G A 25.30 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.793;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=10.7343;MLEAC=1;MLEAF=0.500;MQ=14.66;MQ0=13;MQRankSum=-1.461;QD=0.77;ReadPosRankSum=1.788;SB=5.71 GT:AD:DP:GQ:PL 0/1:9,15:33:34:55,0,34 chrVIII 5392 . A C 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=10.7343;MLEAC=1;MLEAF=0.500;MQ=14.41;MQ0=13;MQRankSum=0.955;QD=0.57;ReadPosRankSum=0.553;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,3:35:50:50,0,79 chrVIII 5422 . G A 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;DP=62;Dels=0.00;FS=9.406;HaplotypeScore=18.9000;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=12;MQRankSum=3.679;QD=1.52;ReadPosRankSum=-1.557;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,23:62:99:124,0,109 chrVIII 5423 . C T 193.06 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=61;Dels=0.00;FS=46.633;HaplotypeScore=18.9000;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=11;MQRankSum=-0.259;QD=3.16;ReadPosRankSum=0.129;SB=-3.071e+00 GT:AD:DP:GQ:PL 0/1:11,50:61:16:223,0,16 chrVIII 5432 . C T 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DP=78;Dels=0.00;FS=2.374;HaplotypeScore=41.0720;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=11;MQRankSum=-0.465;QD=0.49;ReadPosRankSum=1.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,11:78:68:68,0,260 chrVIII 5434 . A G 299.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DP=78;Dels=0.00;FS=32.646;HaplotypeScore=24.3186;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=11;MQRankSum=3.805;QD=3.83;ReadPosRankSum=-0.047;SB=-2.916e+00 GT:AD:DP:GQ:PL 0/1:29,49:78:18:329,0,18 chrVIII 5442 . A G 132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.787;DP=81;Dels=0.00;FS=26.476;HaplotypeScore=47.3878;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=8;MQRankSum=2.985;QD=1.63;ReadPosRankSum=0.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,37:81:99:162,0,213 chrVIII 5477 . C A 155.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=86;Dels=0.00;FS=144.754;HaplotypeScore=163.2422;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=0;MQRankSum=-0.733;QD=1.80;ReadPosRankSum=-0.647;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:58,14:86:99:185,0,241 chrVIII 5478 . C T 195.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.262;DP=86;Dels=0.00;FS=54.675;HaplotypeScore=31.3663;MLEAC=1;MLEAF=0.500;MQ=26.07;MQ0=0;MQRankSum=-1.241;QD=2.27;ReadPosRankSum=0.287;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:52,34:86:99:225,0,195 chrVIII 5485 . C A 550 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=43.3954;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=1;QD=6.18;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:66:583,66,0 chrVIII 5489 . G A 578 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=1;QD=6.49;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:69:611,69,0 chrVIII 5490 . T G 175.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;DP=90;Dels=0.00;FS=147.066;HaplotypeScore=3.4526;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=1;MQRankSum=2.620;QD=1.94;ReadPosRankSum=0.997;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:76,14:90:99:205,0,259 chrVIII 5492 . C A 174.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;DP=89;Dels=0.00;FS=134.617;HaplotypeScore=4.3684;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=1;MQRankSum=2.064;QD=1.96;ReadPosRankSum=1.376;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:74,15:89:99:204,0,262 chrVIII 5502 . C T 177.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;DP=91;Dels=0.00;FS=165.816;HaplotypeScore=14.1504;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=2;MQRankSum=1.770;QD=1.95;ReadPosRankSum=2.318;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:76,15:91:99:207,0,267 chrVIII 5504 . C G 170.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;DP=88;Dels=0.00;FS=163.381;HaplotypeScore=13.3182;MLEAC=1;MLEAF=0.500;MQ=25.92;MQ0=2;MQRankSum=1.582;QD=1.93;ReadPosRankSum=2.515;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:73,15:88:99:200,0,195 chrVIII 5506 . A C 175.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DP=83;Dels=0.00;FS=159.108;HaplotypeScore=11.5300;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=2;MQRankSum=1.477;QD=2.11;ReadPosRankSum=2.292;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:68,15:83:99:205,0,213 chrVIII 5517 . A G 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=65;Dels=0.00;FS=121.763;HaplotypeScore=9.3701;MLEAC=1;MLEAF=0.500;MQ=25.15;MQ0=4;MQRankSum=1.020;QD=2.15;ReadPosRankSum=1.243;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:51,14:65:68:170,0,68 chrVIII 5518 . T C 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;DP=63;Dels=0.00;FS=131.238;HaplotypeScore=18.2975;MLEAC=1;MLEAF=0.500;MQ=25.02;MQ0=4;MQRankSum=1.238;QD=2.29;ReadPosRankSum=0.989;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:49,14:63:74:174,0,74 chrVIII 5520 . C T 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;DP=61;Dels=0.00;FS=128.862;HaplotypeScore=22.2474;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=4;MQRankSum=1.066;QD=2.21;ReadPosRankSum=0.380;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:47,14:61:45:165,0,45 chrVIII 5521 . C T 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;DP=59;Dels=0.00;FS=75.733;HaplotypeScore=22.2474;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=4;MQRankSum=0.286;QD=1.59;ReadPosRankSum=-0.165;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:38,21:59:52:124,0,52 chrVIII 5528 . A G 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.268;DP=58;Dels=0.00;FS=64.229;HaplotypeScore=22.2916;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=4;MQRankSum=0.399;QD=0.40;ReadPosRankSum=0.156;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,30:58:53:53,0,139 chrVIII 5539 . T G 103.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.104;DP=51;Dels=0.00;FS=111.482;HaplotypeScore=16.5654;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=4;MQRankSum=2.319;QD=2.04;ReadPosRankSum=-2.295;SB=-3.797e+00 GT:AD:DP:GQ:PL 0/1:38,13:51:4:133,0,4 chrVIII 5544 . T A 109.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;DP=49;Dels=0.00;FS=46.481;HaplotypeScore=14.4473;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=4;MQRankSum=1.328;QD=2.23;ReadPosRankSum=0.102;SB=-1.604e+02 GT:AD:DP:GQ:PL 0/1:23,26:49:7:139,0,7 chrVIII 5600 . T C 125.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.208;DP=22;Dels=0.00;FS=15.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.72;MQ0=6;MQRankSum=2.153;QD=5.69;ReadPosRankSum=3.308;SB=-4.887e+01 GT:AD:DP:GQ:PL 1/1:14,8:22:5:156,5,0 chrVIII 5639 . T G 124.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.276;DP=25;Dels=0.00;FS=24.423;HaplotypeScore=2.7478;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=5;MQRankSum=2.585;QD=4.96;ReadPosRankSum=-0.193;SB=-4.887e+01 GT:AD:DP:GQ:PL 1/1:17,8:25:5:155,5,0 chrVIII 5642 . T C 166.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.7478;MLEAC=2;MLEAF=1.00;MQ=13.41;MQ0=6;QD=6.39;SB=-1.119e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:199,27,0 chrVIII 5645 . T C 124.12 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DP=26;Dels=0.00;FS=24.423;HaplotypeScore=2.7478;MLEAC=2;MLEAF=1.00;MQ=13.41;MQ0=6;MQRankSum=2.585;QD=4.77;ReadPosRankSum=-1.967;SB=-4.887e+01 GT:AD:DP:GQ:PL 1/1:18,8:26:5:155,5,0 chrVIII 5657 . A G 119.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;DP=31;Dels=0.00;FS=26.723;HaplotypeScore=2.7478;MLEAC=1;MLEAF=0.500;MQ=13.23;MQ0=9;MQRankSum=2.082;QD=3.84;ReadPosRankSum=-2.559;SB=-4.679e+01 GT:AD:DP:GQ:PL 0/1:23,8:31:17:149,0,17 chrVIII 5714 . C T 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=5.4087;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=5;MQRankSum=1.377;QD=2.44;ReadPosRankSum=1.106;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:8,8:16:9:71,9,0 chrVIII 5724 . C T 287 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=5;QD=5.98;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:39:320,39,0 chrVIII 5759 . G A 660.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.741;DP=160;Dels=0.00;FS=3.096;HaplotypeScore=56.8241;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=1;MQRankSum=-2.267;QD=4.13;ReadPosRankSum=1.182;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:107,53:160:99:690,0,1920 chrVIII 5764 . C T 593.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.041;DP=163;Dels=0.00;FS=22.720;HaplotypeScore=72.7245;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=1;MQRankSum=5.027;QD=3.64;ReadPosRankSum=-7.192;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:109,53:163:99:623,0,1954 chrVIII 5790 . T C 566.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.233;DP=199;Dels=0.00;FS=22.101;HaplotypeScore=15.6628;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=1;MQRankSum=-0.854;QD=2.84;ReadPosRankSum=1.891;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:146,53:199:99:596,0,2726 chrVIII 5830 . C T 446.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;DP=128;Dels=0.00;FS=69.819;HaplotypeScore=30.1166;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=0;MQRankSum=-1.132;QD=3.48;ReadPosRankSum=-5.051;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,40:128:99:476,0,1315 chrVIII 5838 . A G 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;DP=93;Dels=0.00;FS=46.690;HaplotypeScore=16.3686;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=0;MQRankSum=-2.203;QD=1.49;ReadPosRankSum=-2.893;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,18:93:99:169,0,1136 chrVIII 5953 . T C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;MQRankSum=-0.727;QD=3.73;ReadPosRankSum=0.727;SB=1.30 GT:AD:DP:GQ:PL 1/1:1,3:4:6:46,6,0 chrVIII 5973 . C T 10.52 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=0;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-1.026;SB=-1.131e-01 GT:AD:DP:GQ:PL 0/1:2,2:4:13:40,0,13 chrVIII 6017 . A C 192.01 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;QD=16.00;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:27:225,27,0 chrVIII 6034 . A C 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=-0.065;QD=0.69;ReadPosRankSum=-2.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,4:15:40:40,0,169 chrVIII 6036 . G A 136.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=0.065;QD=9.07;ReadPosRankSum=1.893;SB=-6.728e-03 GT:AD:DP:GQ:PL 0/1:4,11:15:40:166,0,40 chrVIII 6037 . T C 133.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.90;MQ0=0;MQRankSum=0.326;QD=8.87;ReadPosRankSum=1.893;SB=-6.686e-03 GT:AD:DP:GQ:PL 0/1:4,11:15:41:163,0,41 chrVIII 6038 . A G 192.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=12.80;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:225,27,0 chrVIII 6048 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.6823;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=1.732;QD=2.23;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,6:22:79:79,0,260 chrVIII 6053 . T C 419 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.6823;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=17.46;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:54:452,54,0 chrVIII 6057 . C T 356.64 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.800;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.6823;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;MQRankSum=3.023;QD=14.27;ReadPosRankSum=-0.442;SB=2.43 GT:AD:DP:GQ:PL 1/1:5,20:25:11:389,11,0 chrVIII 6069 . A G 608 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;MQRankSum=-0.407;QD=11.05;ReadPosRankSum=5.691;SB=3.00 GT:AD:DP:GQ:PL 1/1:21,34:55:75:641,75,0 chrVIII 6088 . C T 675.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=0;MQRankSum=1.608;QD=8.33;ReadPosRankSum=1.151;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:31,50:81:82:705,0,82 chrVIII 6111 . G T 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.856;DP=88;Dels=0.00;FS=5.261;HaplotypeScore=18.2554;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=0;MQRankSum=-1.071;QD=1.05;ReadPosRankSum=0.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,32:88:99:122,0,701 chrVIII 6119 . G C 641.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;DP=89;Dels=0.00;FS=5.471;HaplotypeScore=10.5546;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=0;MQRankSum=1.777;QD=7.20;ReadPosRankSum=0.975;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:34,55:89:99:671,0,123 chrVIII 6124 . G A 685.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.578;DP=90;Dels=0.00;FS=5.544;HaplotypeScore=33.0073;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=0;MQRankSum=2.533;QD=7.61;ReadPosRankSum=1.109;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:35,55:90:99:715,0,117 chrVIII 6125 . C T 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;DP=89;Dels=0.00;FS=5.471;HaplotypeScore=33.0073;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=0;MQRankSum=-1.499;QD=0.54;ReadPosRankSum=-0.958;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,34:89:78:78,0,647 chrVIII 6130 . G T 105.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.102;DP=85;Dels=0.00;FS=5.200;HaplotypeScore=24.4288;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=-1.779;QD=1.24;ReadPosRankSum=0.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,27:85:99:135,0,654 chrVIII 6139 . T C 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DP=78;Dels=0.00;FS=7.730;HaplotypeScore=29.3554;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=0;MQRankSum=-1.358;QD=1.33;ReadPosRankSum=-0.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,24:78:99:134,0,543 chrVIII 6143 . G A 345.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;DP=74;Dels=0.00;FS=4.008;HaplotypeScore=46.7505;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=0;MQRankSum=2.827;QD=4.66;ReadPosRankSum=0.859;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:33,41:74:99:375,0,254 chrVIII 6148 . T A 531.04 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DP=62;Dels=0.00;FS=23.236;HaplotypeScore=38.1904;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=0;MQRankSum=1.732;QD=8.57;ReadPosRankSum=1.636;SB=-3.103e+01 GT:AD:DP:GQ:PL 0/1:10,52:62:18:561,0,18 chrVIII 6149 . T G 371.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.125;DP=61;Dels=0.00;FS=7.906;HaplotypeScore=35.3169;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=0;MQRankSum=2.343;QD=6.08;ReadPosRankSum=1.882;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:20,41:61:99:401,0,165 chrVIII 6150 . C T 273.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.686;DP=61;Dels=0.00;FS=1.795;HaplotypeScore=26.4770;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=0;MQRankSum=3.054;QD=4.48;ReadPosRankSum=2.361;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:29,32:61:99:303,0,257 chrVIII 6151 . G A 278.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.779;DP=60;Dels=0.00;FS=1.826;HaplotypeScore=27.3711;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=0;MQRankSum=3.075;QD=4.63;ReadPosRankSum=2.171;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:28,32:60:99:308,0,261 chrVIII 6165 . C T 209.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.574;DP=50;Dels=0.00;FS=1.565;HaplotypeScore=17.4428;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=0;MQRankSum=1.832;QD=4.18;ReadPosRankSum=1.812;SB=-6.601e+01 GT:AD:DP:GQ:PL 0/1:20,30:50:99:239,0,108 chrVIII 6170 . T A,G 229.22 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.306;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.7596;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.24;MQ0=0;MQRankSum=1.223;QD=6.74;ReadPosRankSum=1.427;SB=-1.632e+02 GT:AD:DP:GQ:PL 1/2:1,5,28:34:40:289,222,213,67,0,40 chrVIII 6171 . G A 312 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=19.1658;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;MQRankSum=0.917;QD=9.18;ReadPosRankSum=1.529;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:39:345,39,0 chrVIII 6186 . C A 147.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=34;Dels=0.00;FS=9.418;HaplotypeScore=9.5321;MLEAC=1;MLEAF=0.500;MQ=25.65;MQ0=0;MQRankSum=2.172;QD=4.32;ReadPosRankSum=-0.037;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:11,23:34:63:177,0,63 chrVIII 6218 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.953;DP=16;Dels=0.00;FS=5.119;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=0;MQRankSum=-0.318;QD=1.05;ReadPosRankSum=0.106;SB=-5.764e+00 GT:AD:DP:GQ:PL 1/1:9,7:16:6:48,6,0 chrVIII 6227 . T G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=0;QD=1.07;SB=-9.051e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:45,6,0 chrVIII 6475 . C T 57.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;DP=21;Dels=0.00;FS=10.212;HaplotypeScore=3.4006;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=0;MQRankSum=1.239;QD=2.73;ReadPosRankSum=1.569;SB=-2.443e+01 GT:AD:DP:GQ:PL 0/1:1,20:21:7:87,0,7 chrVIII 6484 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;DP=33;Dels=0.00;FS=25.437;HaplotypeScore=3.3555;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=0;MQRankSum=-2.455;QD=0.34;ReadPosRankSum=-1.241;SB=0.028 GT:AD:DP:GQ:PL 0/1:29,4:33:41:41,0,107 chrVIII 6493 . T C 77.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=43;Dels=0.00;FS=16.897;HaplotypeScore=15.0561;MLEAC=1;MLEAF=0.500;MQ=24.14;MQ0=0;MQRankSum=-2.659;QD=1.79;ReadPosRankSum=-1.682;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:33,10:43:99:107,0,220 chrVIII 6497 . C A 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DP=44;Dels=0.00;FS=38.472;HaplotypeScore=8.7965;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=0;MQRankSum=2.679;QD=1.02;ReadPosRankSum=1.574;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,23:44:75:75,0,284 chrVIII 6504 . A G 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DP=45;Dels=0.00;FS=41.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=0;MQRankSum=2.781;QD=0.98;ReadPosRankSum=0.443;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,23:45:74:74,0,306 chrVIII 6505 . A C 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.251;DP=46;Dels=0.00;FS=41.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=2.483;QD=0.78;ReadPosRankSum=0.373;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,23:46:66:66,0,331 chrVIII 6506 . T A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=46;Dels=0.00;FS=41.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=3.669;QD=0.85;ReadPosRankSum=0.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,23:46:69:69,0,339 chrVIII 6515 . T G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;DP=48;Dels=0.00;FS=49.611;HaplotypeScore=10.4594;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=2.497;QD=0.83;ReadPosRankSum=-0.743;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,23:48:70:70,0,343 chrVIII 6516 . T A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;DP=48;Dels=0.00;FS=49.611;HaplotypeScore=10.4594;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=2.353;QD=0.90;ReadPosRankSum=-0.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,23:48:73:73,0,327 chrVIII 6517 . T G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621;DP=48;Dels=0.00;FS=49.611;HaplotypeScore=10.4594;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=3.054;QD=0.71;ReadPosRankSum=-1.135;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,23:48:64:64,0,336 chrVIII 6523 . T C 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.418;DP=50;Dels=0.00;FS=11.504;HaplotypeScore=10.4594;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=0;MQRankSum=-3.055;QD=1.68;ReadPosRankSum=2.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,12:50:99:114,0,288 chrVIII 6529 . T G 457 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=10.4594;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=0;MQRankSum=-0.500;QD=10.16;ReadPosRankSum=1.655;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:60:490,60,0 chrVIII 6531 . A C 423 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=10.4594;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=0;QD=9.40;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:456,54,0 chrVIII 6538 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;DP=52;Dels=0.00;FS=44.004;HaplotypeScore=3.4091;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=0;MQRankSum=2.930;QD=0.63;ReadPosRankSum=-1.923;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,25:52:63:63,0,355 chrVIII 6592 . A G 48.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;DP=17;Dels=0.00;FS=22.304;HaplotypeScore=4.6247;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=0;MQRankSum=1.197;QD=2.83;ReadPosRankSum=0.945;SB=-1.912e+01 GT:AD:DP:GQ:PL 0/1:3,14:17:13:78,0,13 chrVIII 6594 . T C 14.28 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=17;Dels=0.00;FS=26.776;HaplotypeScore=4.6247;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=0;MQRankSum=1.845;QD=0.84;ReadPosRankSum=1.107;SB=-2.954e+00 GT:AD:DP:GQ:PL 0/1:5,12:17:13:44,0,13 chrVIII 6599 . A G 10.52 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=14;Dels=0.00;FS=19.590;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=0;MQRankSum=2.616;QD=0.75;ReadPosRankSum=1.909;SB=-1.929e+00 GT:AD:DP:GQ:PL 0/1:4,10:14:13:40,0,13 chrVIII 6600 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=0;QD=3.46;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:77,9,0 chrVIII 6602 . A G 10.52 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;DP=13;Dels=0.00;FS=14.150;HaplotypeScore=4.0738;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=0;MQRankSum=2.451;QD=0.81;ReadPosRankSum=1.606;SB=-2.484e+00 GT:AD:DP:GQ:PL 0/1:3,10:13:13:40,0,13 chrVIII 6612 . A T 37.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=1.488;QD=2.66;ReadPosRankSum=-0.248;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:1,13:14:10:67,0,10 chrVIII 6614 . C T 35.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=1.488;QD=2.52;ReadPosRankSum=-0.248;SB=-3.059e+00 GT:AD:DP:GQ:PL 0/1:1,13:14:10:65,0,10 chrVIII 6619 . T C 33.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.448;QD=2.77;ReadPosRankSum=1.159;SB=-2.896e+00 GT:AD:DP:GQ:PL 0/1:1,11:12:10:63,0,10 chrVIII 6621 . T A 44.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.448;QD=3.68;ReadPosRankSum=1.159;SB=-2.896e+00 GT:AD:DP:GQ:PL 0/1:1,11:12:10:74,0,10 chrVIII 6624 . T C 38.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.448;QD=3.18;ReadPosRankSum=1.159;SB=-2.896e+00 GT:AD:DP:GQ:PL 0/1:1,11:12:10:68,0,10 chrVIII 6629 . C A 41.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.12;MQ0=0;MQRankSum=1.423;QD=3.75;ReadPosRankSum=1.423;SB=-2.588e+00 GT:AD:DP:GQ:PL 0/1:1,10:11:10:71,0,10 chrVIII 6632 . C T 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.33;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:80,9,0 chrVIII 6635 . G C 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.89;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:76,9,0 chrVIII 6636 . T G 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.66;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:74,9,0 chrVIII 6740 . A C 13.30 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=8;Dels=0.00;FS=3.680;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=19.88;MQ0=0;MQRankSum=0.922;QD=1.66;ReadPosRankSum=0.000;SB=-1.733e+01 GT:AD:DP:GQ:PL 0/1:4,4:8:14:43,0,14 chrVIII 6772 . C T 162.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=-0.948;QD=9.00;ReadPosRankSum=-0.948;SB=0.151 GT:AD:DP:GQ:PL 0/1:3,15:18:16:192,0,16 chrVIII 6773 . G A 184.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=2.169;QD=10.22;ReadPosRankSum=-1.971;SB=0.120 GT:AD:DP:GQ:PL 0/1:5,13:18:17:214,0,17 chrVIII 6850 . C A 837 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;QD=17.81;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:870,96,0 chrVIII 6857 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=19.47;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:909,108,0 chrVIII 6865 . T C 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=6.598;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=1.012;QD=16.40;ReadPosRankSum=2.271;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:935,114,0 chrVIII 7057 . A G 253 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=9.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:33:286,33,0 chrVIII 7061 . G A 266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=3.881;QD=10.23;ReadPosRankSum=0.862;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:9,17:26:33:299,33,0 chrVIII 7062 . C T 243 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.970;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=3.719;QD=9.35;ReadPosRankSum=0.701;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:9,17:26:30:276,30,0 chrVIII 7085 . A G 186.03 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=8.86;SB=-8.004e+01 GT:AD:DP:GQ:PL 1/1:0,19:21:24:219,24,0 chrVIII 7087 . T C 151.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;MQRankSum=0.315;QD=6.87;ReadPosRankSum=2.205;SB=-8.207e+01 GT:AD:DP:GQ:PL 1/1:2,18:22:21:184,21,0 chrVIII 7090 . T C 183.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;MQRankSum=0.786;QD=7.04;ReadPosRankSum=2.706;SB=-8.004e+01 GT:AD:DP:GQ:PL 1/1:3,21:26:24:216,24,0 chrVIII 7099 . T C 291 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.973;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=12.5299;MLEAC=2;MLEAF=1.00;MQ=25.51;MQ0=0;MQRankSum=1.876;QD=11.19;ReadPosRankSum=1.684;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,24:26:39:324,39,0 chrVIII 7102 . C T 313 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.019;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=0;MQRankSum=2.128;QD=13.61;ReadPosRankSum=2.237;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:39:346,39,0 chrVIII 7103 . A T 309 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.055;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=0;MQRankSum=2.019;QD=13.43;ReadPosRankSum=2.237;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:39:342,39,0 chrVIII 7104 . A G 300 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=14.29;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:333,39,0 chrVIII 7107 . T G 261 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=12.43;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:294,36,0 chrVIII 7113 . G T 294 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=12.78;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:39:327,39,0 chrVIII 7118 . C G 269 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=11.70;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:302,36,0 chrVIII 7119 . C G 273 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=11.87;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:306,36,0 chrVIII 7128 . T C 322 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.10;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:355,42,0 chrVIII 7131 . A G 319 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=10.29;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:352,42,0 chrVIII 7140 . T A 314 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DP=33;Dels=0.00;FS=4.771;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-0.263;QD=9.52;ReadPosRankSum=1.628;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:42:347,42,0 chrVIII 7141 . A T 336 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;DP=33;Dels=0.00;FS=4.771;HaplotypeScore=1.9765;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-1.523;QD=10.18;ReadPosRankSum=1.628;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:42:369,42,0 chrVIII 7152 . C T 490 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=0;QD=12.25;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:60:523,60,0 chrVIII 7155 . C T 389 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=10.81;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:422,48,0 chrVIII 7156 . T A 406 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=11.28;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:439,51,0 chrVIII 7157 . G C 400 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=11.11;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:433,51,0 chrVIII 7164 . C A 417 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=9.27;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:450,51,0 chrVIII 7168 . C A 425 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=9.24;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:51:458,51,0 chrVIII 7176 . C T 474 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=8.94;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:507,60,0 chrVIII 7205 . T C 462 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.83;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:495,57,0 chrVIII 7207 . T C 454 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.61;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:487,57,0 chrVIII 7208 . A G 440 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.22;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:473,57,0 chrVIII 7209 . T C 450 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.50;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:483,57,0 chrVIII 7214 . A G 462 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.83;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:495,57,0 chrVIII 7215 . C T 435 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.08;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:468,54,0 chrVIII 7217 . A G 427 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=11.86;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:460,54,0 chrVIII 7219 . A G 448 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=12.44;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:481,57,0 chrVIII 7220 . G T 419 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=11.64;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:452,54,0 chrVIII 7227 . A G 440 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=9.57;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:57:473,57,0 chrVIII 7228 . A G 463 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=10.07;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:57:496,57,0 chrVIII 7237 . G A 552 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=1;QD=10.04;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:585,66,0 chrVIII 7255 . G T 524 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=4;QD=9.19;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:66:557,66,0 chrVIII 7262 . G A 806 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.136;DP=77;Dels=0.00;FS=3.791;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=4;MQRankSum=3.364;QD=10.47;ReadPosRankSum=2.281;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:9,68:77:76:839,76,0 chrVIII 7411 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=15.78;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:759,84,0 chrVIII 7426 . G C 735 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=17.09;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:768,87,0 chrVIII 7474 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=18.85;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1032,120,0 chrVIII 7576 . A T 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=53;Dels=0.00;FS=2.862;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=-0.071;QD=16.28;ReadPosRankSum=2.355;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:896,102,0 chrVIII 7590 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=15.09;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:742,87,0 chrVIII 7596 . C G 829 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=16.92;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:862,102,0 chrVIII 7641 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=33.44;MQ0=0;QD=15.90;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1130,135,0 chrVIII 7656 . T A 972 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=16.76;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1005,120,0 chrVIII 7694 . A G 976 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=17.12;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1009,120,0 chrVIII 7696 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=16.66;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:966,117,0 chrVIII 7714 . G T 589 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=15.50;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:622,75,0 chrVIII 7727 . A C 365 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=15.21;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:398,48,0 chrVIII 7742 . C A 330 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;QD=13.75;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:363,42,0 chrVIII 7747 . T C 348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=7.579;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;MQRankSum=-0.491;QD=12.43;ReadPosRankSum=2.275;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:45:381,45,0 chrVIII 7767 . T C 795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.182;DP=46;Dels=0.00;FS=2.809;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-0.727;QD=17.28;ReadPosRankSum=2.235;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:828,99,0 chrVIII 7823 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=20.80;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1780,210,0 chrVIII 7825 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=20.69;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1833,222,0 chrVIII 7835 . A C 1902 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=18.65;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:102:99:1935,228,0 chrVIII 7900 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=16.46;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1761,198,0 chrVIII 7930 . G T 1249 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=12.37;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1282,144,0 chrVIII 7938 . A C 915 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=7.360;HaplotypeScore=59.7645;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;MQRankSum=0.106;QD=9.34;ReadPosRankSum=1.697;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:948,114,0 chrVIII 7939 . G A 943 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=58.9758;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=9.72;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:976,114,0 chrVIII 7959 . A G 430 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=5.12;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:57:463,57,0 chrVIII 7965 . G C 416 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=5.01;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:54:449,54,0 chrVIII 7987 . G A 667 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=7.76;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:84:700,84,0 chrVIII 8016 . T G 960 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=11.03;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:993,120,0 chrVIII 8034 . T C 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=87;Dels=0.00;FS=2.498;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;MQRankSum=1.268;QD=11.72;ReadPosRankSum=2.919;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1053,129,0 chrVIII 8042 . G A 1206 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.31;MQ0=0;QD=13.55;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1239,144,0 chrVIII 8066 . A T 1635 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=15.00;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1668,195,0 chrVIII 8084 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=14.30;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1306,156,0 chrVIII 8090 . T A 1452 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=15.45;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1485,168,0 chrVIII 8096 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=15.54;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1509,171,0 chrVIII 8105 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;QD=14.33;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1480,171,0 chrVIII 8144 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6154;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=14.63;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1759,201,0 chrVIII 8151 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=13.18;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1654,198,0 chrVIII 8165 . T C 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;MQRankSum=-0.735;QD=14.68;ReadPosRankSum=1.707;SB=-1.634e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2074,246,0 chrVIII 8183 . G T 2345 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=14.94;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2378,273,0 chrVIII 8434 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=20.14;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2268,261,0 chrVIII 8813 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.147;QD=16.17;ReadPosRankSum=1.683;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1181,138,0 chrVIII 9010 . T C 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=85;Dels=0.00;FS=3.040;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.455;QD=16.73;ReadPosRankSum=2.391;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1455,162,0 chrVIII 9035 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=76;Dels=0.00;FS=2.710;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-1.509;QD=12.70;ReadPosRankSum=2.288;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:998,114,0 chrVIII 9047 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=15.49;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1117,123,0 chrVIII 9077 . A G 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.701;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.274;QD=13.04;ReadPosRankSum=1.681;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:933,105,0 chrVIII 9080 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=12.31;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:858,99,0 chrVIII 9673 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=117;Dels=0.00;FS=3.655;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.776;QD=21.06;ReadPosRankSum=1.613;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2497,285,0 chrVIII 10013 . T C 2253 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.67;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2286,264,0 chrVIII 10046 . A T 1983 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.63;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2016,228,0 chrVIII 10242 . G T 1745 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.54;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1778,195,0 chrVIII 10670 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.91;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1246,144,0 chrVIII 10701 . G A 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=3.892;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.308;QD=19.78;ReadPosRankSum=1.662;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:95:1002,95,0 chrVIII 10934 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.96;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1241,138,0 chrVIII 11221 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.85;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1258,144,0 chrVIII 11276 . T A 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=2.963;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.933;QD=21.26;ReadPosRankSum=2.323;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1691,192,0 chrVIII 11503 . T C 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=1.495;QD=20.41;ReadPosRankSum=2.388;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1666,192,0 chrVIII 11531 . T C 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=88;Dels=0.00;FS=5.261;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.253;QD=20.33;ReadPosRankSum=2.874;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1822,213,0 chrVIII 11580 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.92;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1867,216,0 chrVIII 11599 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=22.44;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1873,216,0 chrVIII 11625 . C G 1421 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.59;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1454,168,0 chrVIII 11931 . T C 317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=29;Dels=0.00;FS=9.932;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=1;MQRankSum=2.134;QD=10.93;ReadPosRankSum=2.593;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:42:350,42,0 chrVIII 12094 . A G 611 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=5;MQRankSum=1.564;QD=13.28;ReadPosRankSum=1.648;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:6,40:46:75:644,75,0 chrVIII 12097 . C T 651 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=4;QD=14.80;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:44:75:684,75,0 chrVIII 12142 . G A 563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.159;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=11;MQRankSum=0.159;QD=11.26;ReadPosRankSum=2.197;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:13,37:50:46:596,46,0 chrVIII 12184 . A C 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=22;MQRankSum=-2.853;QD=2.51;ReadPosRankSum=-0.209;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,37:65:99:193,0,157 chrVIII 12229 . G A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.822;DP=57;Dels=0.00;FS=2.071;HaplotypeScore=5.8161;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=14;MQRankSum=-3.204;QD=0.72;ReadPosRankSum=-0.188;SB=-1.901e+01 GT:AD:DP:GQ:PL 0/1:30,27:57:71:71,0,186 chrVIII 12250 . A G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=1;MLEAF=0.500;MQ=16.86;MQ0=11;MQRankSum=4.121;QD=1.93;ReadPosRankSum=-1.725;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,8:45:99:117,0,104 chrVIII 12253 . G A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.6457;MLEAC=1;MLEAF=0.500;MQ=17.67;MQ0=7;MQRankSum=3.918;QD=1.83;ReadPosRankSum=-1.766;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,8:41:99:105,0,106 chrVIII 12262 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.795;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.4779;MLEAC=1;MLEAF=0.500;MQ=18.15;MQ0=3;MQRankSum=2.942;QD=0.70;ReadPosRankSum=-1.716;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,8:33:53:53,0,111 chrVIII 12276 . G A 68.34 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=0;MQRankSum=-1.701;QD=3.42;ReadPosRankSum=0.693;SB=-4.615e+01 GT:AD:DP:GQ:PL 0/1:2,18:20:8:98,0,8 chrVIII 12332 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.091;DP=19;Dels=0.00;FS=3.274;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=1;MQRankSum=3.179;QD=1.15;ReadPosRankSum=-1.413;SB=0.354 GT:AD:DP:GQ:PL 1/1:10,9:19:6:53,6,0 chrVIII 12339 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.7789;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=1;QD=1.25;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:55,6,0 chrVIII 12341 . G A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=19;Dels=0.00;FS=8.625;HaplotypeScore=2.7789;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=1;MQRankSum=2.626;QD=1.25;ReadPosRankSum=-2.083;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:8,11:19:6:55,6,0 chrVIII 12344 . G T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DP=20;Dels=0.00;FS=11.139;HaplotypeScore=6.1592;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=1;MQRankSum=0.935;QD=1.09;ReadPosRankSum=-0.935;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:1,12:20:6:53,6,0 chrVIII 12345 . G T 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=22;Dels=0.00;FS=3.245;HaplotypeScore=6.8243;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=1;MQRankSum=2.910;QD=1.08;ReadPosRankSum=-2.154;SB=1.29 GT:AD:DP:GQ:PL 1/1:12,10:22:6:55,6,0 chrVIII 12348 . T A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=25;Dels=0.00;FS=3.222;HaplotypeScore=13.4555;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=2;MQRankSum=3.021;QD=0.95;ReadPosRankSum=-2.495;SB=1.29 GT:AD:DP:GQ:PL 1/1:14,11:25:6:55,6,0 chrVIII 12362 . C T 16.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;DP=21;Dels=0.00;FS=3.039;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=2;MQRankSum=2.445;QD=0.77;ReadPosRankSum=-0.815;SB=-3.374e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:19:46,0,19 chrVIII 12363 . A T 16.15 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;DP=21;Dels=0.00;FS=3.039;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=2;MQRankSum=2.989;QD=0.77;ReadPosRankSum=-0.725;SB=-4.077e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:18:46,0,18 chrVIII 12367 . G A 16.15 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;DP=21;Dels=0.00;FS=3.039;HaplotypeScore=2.5929;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=2;MQRankSum=2.355;QD=0.77;ReadPosRankSum=-0.543;SB=-4.077e-02 GT:AD:DP:GQ:PL 0/1:14,7:21:18:46,0,18 chrVIII 12398 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=17;Dels=0.00;FS=6.990;HaplotypeScore=4.2847;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=1;MQRankSum=1.555;QD=1.94;ReadPosRankSum=2.848;SB=0.019 GT:AD:DP:GQ:PL 0/1:7,9:17:31:63,0,31 chrVIII 12400 . G T 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=21.8651;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=1;QD=7.30;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:157,18,0 chrVIII 12404 . T C 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;DP=16;Dels=0.00;FS=3.310;HaplotypeScore=21.1472;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=1;MQRankSum=0.772;QD=1.94;ReadPosRankSum=2.431;SB=-6.527e-03 GT:AD:DP:GQ:PL 0/1:7,9:16:54:61,0,54 chrVIII 12409 . A T 18.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=13.5946;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=1;MQRankSum=1.221;QD=1.65;ReadPosRankSum=-1.517;SB=-4.079e-02 GT:AD:DP:GQ:PL 0/1:4,5:11:18:48,0,18 chrVIII 12505 . A G 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=5.38;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:18:162,18,0 chrVIII 12511 . T A 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=7.32;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:194,21,0 chrVIII 12512 . T C 150.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=6.82;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:183,21,0 chrVIII 12513 . A C 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=6.68;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:180,21,0 chrVIII 12520 . T C 159.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=-1.156;QD=6.63;ReadPosRankSum=1.589;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:21:192,21,0 chrVIII 12522 . A G 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=6.42;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:187,21,0 chrVIII 12528 . G A 191.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=8.31;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:224,24,0 chrVIII 12529 . G T 175.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=7.61;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:208,24,0 chrVIII 12533 . G A 176.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=19.4303;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=6.77;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:209,24,0 chrVIII 12546 . T C 218 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.7689;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=9.08;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:251,30,0 chrVIII 12548 . C T 251 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.7689;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.46;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:284,33,0 chrVIII 12555 . C T 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=8.95;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:194,21,0 chrVIII 12557 . A G 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=8.50;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:186,21,0 chrVIII 12563 . T C 144.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=6.55;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:177,21,0 chrVIII 12596 . C T 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;DP=26;Dels=0.00;FS=34.031;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=1;MQRankSum=-0.630;QD=0.66;ReadPosRankSum=-2.409;SB=0.128 GT:AD:DP:GQ:PL 0/1:22,4:26:47:47,0,176 chrVIII 12605 . G A 109.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;DP=28;Dels=0.00;FS=67.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=2;MQRankSum=1.239;QD=3.89;ReadPosRankSum=3.610;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,16:28:99:139,0,184 chrVIII 12606 . G C 106.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=28;Dels=0.00;FS=67.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=2;MQRankSum=0.448;QD=3.79;ReadPosRankSum=2.978;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,16:28:99:136,0,182 chrVIII 12608 . A G 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;DP=28;Dels=0.00;FS=67.252;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=2;MQRankSum=1.344;QD=3.96;ReadPosRankSum=2.503;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,16:28:99:141,0,207 chrVIII 12613 . T A 411 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=2;QD=13.70;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:2,28:30:48:444,48,0 chrVIII 12616 . T A 106.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;DP=29;Dels=0.00;FS=69.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=2;MQRankSum=-1.782;QD=3.66;ReadPosRankSum=-0.025;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:12,17:29:99:136,0,180 chrVIII 12660 . T C 227.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=40;Dels=0.00;FS=67.432;HaplotypeScore=17.7087;MLEAC=1;MLEAF=0.500;MQ=34.93;MQ0=1;MQRankSum=2.337;QD=5.68;ReadPosRankSum=-2.082;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,23:40:99:257,0,203 chrVIII 12663 . A C 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.997;DP=40;Dels=0.00;FS=40.974;HaplotypeScore=11.7863;MLEAC=1;MLEAF=0.500;MQ=34.93;MQ0=1;MQRankSum=-1.324;QD=3.23;ReadPosRankSum=-0.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,12:40:99:159,0,254 chrVIII 12692 . C A 270.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=35;Dels=0.03;FS=34.505;HaplotypeScore=10.7992;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;MQRankSum=2.334;QD=7.72;ReadPosRankSum=-0.873;SB=-7.219e+00 GT:AD:DP:GQ:PL 1/1:8,26:34:16:303,16,0 chrVIII 12721 . T A 458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.297;DP=32;Dels=0.00;FS=8.478;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=1.194;QD=14.31;ReadPosRankSum=2.024;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:5,27:32:54:491,54,0 chrVIII 12722 . T G 432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=32;Dels=0.00;FS=15.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=1.624;QD=13.50;ReadPosRankSum=1.624;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:4,28:32:54:465,54,0 chrVIII 12758 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=17.46;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:836,102,0 chrVIII 12780 . A G 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=51;Dels=0.00;FS=4.416;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;MQRankSum=1.659;QD=16.76;ReadPosRankSum=1.659;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,46:51:99:888,102,0 chrVIII 12931 . G A 767 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.18;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:800,87,0 chrVIII 12972 . T C 534 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=17.23;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:66:567,66,0 chrVIII 13001 . G A 570 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=14.62;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:603,66,0 chrVIII 13185 . A G 889 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=15.87;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:922,105,0 chrVIII 13244 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.84;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1179,129,0 chrVIII 13429 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.28;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1838,207,0 chrVIII 13526 . A G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;DP=88;Dels=0.00;FS=7.394;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.103;QD=20.85;ReadPosRankSum=1.905;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1868,194,0 chrVIII 13589 . A G 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=9.003;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.132;QD=22.96;ReadPosRankSum=2.240;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1112,126,0 chrVIII 13703 . T C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.048;QD=20.60;ReadPosRankSum=1.689;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1702,198,0 chrVIII 13851 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.56;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2334,255,0 chrVIII 13872 . G C 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.06;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2265,264,0 chrVIII 13934 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=4.523;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.102;QD=19.06;ReadPosRankSum=1.651;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1653,195,0 chrVIII 14034 . A C 1871 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.02;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1904,219,0 chrVIII 14130 . G C 1918 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2918;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.76;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:1951,225,0 chrVIII 14146 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.39;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1872,213,0 chrVIII 14262 . T A 1041 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.28;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1074,117,0 chrVIII 14293 . C T 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DP=80;Dels=0.00;FS=6.478;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=1.559;QD=17.37;ReadPosRankSum=-0.087;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1423,139,0 chrVIII 14337 . T C 1304 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=16.72;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1337,153,0 chrVIII 14338 . G A 1323 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=16.96;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1356,156,0 chrVIII 14346 . G T 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.42;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1314,147,0 chrVIII 14381 . T C 1086 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.52;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1119,132,0 chrVIII 14448 . T C 1078 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.11;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1111,126,0 chrVIII 14452 . T G 1052 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=3.069;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.513;QD=16.18;ReadPosRankSum=2.298;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1085,123,0 chrVIII 14457 . T G 1036 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.19;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1069,126,0 chrVIII 14579 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.49;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2000,222,0 chrVIII 14584 . G C 1751 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.24;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1784,210,0 chrVIII 14600 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=16.41;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1395,165,0 chrVIII 14669 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.03;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1615,183,0 chrVIII 14685 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.54;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1870,213,0 chrVIII 14784 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.06;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1732,204,0 chrVIII 14935 . A G 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.016;QD=19.53;ReadPosRankSum=2.356;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1576,180,0 chrVIII 14965 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9855;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.11;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1428,156,0 chrVIII 15038 . G C 1877 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.40;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1910,222,0 chrVIII 15114 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.53;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1400,165,0 chrVIII 15293 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.38;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1002,114,0 chrVIII 15490 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=61.15;MQ0=0;QD=19.30;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1268,141,0 chrVIII 15569 . A T 1729 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.05;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1762,201,0 chrVIII 15638 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.40;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1461,165,0 chrVIII 15653 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.698;QD=18.76;ReadPosRankSum=1.681;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1309,153,0 chrVIII 15755 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1750,201,0 chrVIII 15928 . T C 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.252;QD=22.00;ReadPosRankSum=1.698;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,100:104:99:2321,270,0 chrVIII 16308 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.99;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1238,138,0 chrVIII 16326 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=16.10;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1047,120,0 chrVIII 16403 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.31;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:960,105,0 chrVIII 16485 . G A 942 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:975,111,0 chrVIII 16671 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.42;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1930,228,0 chrVIII 16733 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=21.34;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1847,213,0 chrVIII 16735 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=21.99;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1968,219,0 chrVIII 16886 . G C 2444 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.25;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2477,288,0 chrVIII 17120 . A C 995 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=15.79;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1028,117,0 chrVIII 17127 . T A 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=51.1720;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;MQRankSum=-0.346;QD=14.63;ReadPosRankSum=0.453;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:984,111,0 chrVIII 17132 . T G 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=56.1481;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;MQRankSum=1.292;QD=13.62;ReadPosRankSum=0.687;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:891,102,0 chrVIII 17151 . A G 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;MQRankSum=-0.756;QD=13.30;ReadPosRankSum=1.683;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:977,114,0 chrVIII 17157 . A G 1007 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=13.79;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1040,120,0 chrVIII 17227 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=18.80;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1819,198,0 chrVIII 17230 . C T 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=1.546;QD=16.63;ReadPosRankSum=1.509;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1646,189,0 chrVIII 17359 . A T 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.84;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1325,150,0 chrVIII 17641 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.07;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:891,99,0 chrVIII 17751 . G T 912 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.83;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:945,105,0 chrVIII 17904 . T C 724 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.05;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:757,87,0 chrVIII 18093 . T G 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=-0.304;QD=16.36;ReadPosRankSum=1.802;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1031,117,0 chrVIII 18094 . T C 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;MQRankSum=0.223;QD=14.58;ReadPosRankSum=1.681;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:937,108,0 chrVIII 18107 . A G 915 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=14.52;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:948,111,0 chrVIII 18197 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=18.29;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1734,198,0 chrVIII 18198 . A T 1697 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=18.45;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1730,189,0 chrVIII 18210 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=16.78;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1560,171,0 chrVIII 18542 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.273;DP=125;Dels=0.00;FS=7.337;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.800;QD=18.57;ReadPosRankSum=2.391;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2354,273,0 chrVIII 18702 . A G 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=-0.106;QD=19.31;ReadPosRankSum=1.697;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1925,222,0 chrVIII 18810 . C T 2412 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.54;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2445,267,0 chrVIII 18855 . A G 3078 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.47;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3111,357,0 chrVIII 18917 . G A 3322.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.9661;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.60;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3322,363,0 chrVIII 18957 . T C 3233.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.651;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.135;QD=22.93;ReadPosRankSum=1.192;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3265,345,0 chrVIII 18989 . A G 2731 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.76;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2764,312,0 chrVIII 19035 . G A 1742 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7776;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.49;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1775,192,0 chrVIII 19101 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2424;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.34;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2006,228,0 chrVIII 19172 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6600;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.57;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2057,231,0 chrVIII 19706 . C A 2010 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.44;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2043,234,0 chrVIII 19808 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5855;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.58;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1988,225,0 chrVIII 19914 . C T 2766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3605;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.31;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2799,315,0 chrVIII 20045 . G T 2261 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.17;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2294,258,0 chrVIII 20117 . T C 2498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=3.010;HaplotypeScore=18.2596;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.426;QD=20.31;ReadPosRankSum=1.704;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2531,291,0 chrVIII 20228 . C T 3396.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.34;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3396,387,0 chrVIII 20294 . G T 3007 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=9.6922;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.18;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:3040,342,0 chrVIII 20795 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.52;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2144,234,0 chrVIII 20806 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.39;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2093,231,0 chrVIII 20852 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.28;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2297,249,0 chrVIII 20919 . A T 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.153;QD=16.69;ReadPosRankSum=2.315;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2470,282,0 chrVIII 20921 . G A 2424 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=16.95;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2457,273,0 chrVIII 20993 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.43;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1992,222,0 chrVIII 21004 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=14.82;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1885,216,0 chrVIII 21033 . A T 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.301;DP=102;Dels=0.00;FS=4.883;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.578;QD=19.47;ReadPosRankSum=3.163;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:4,98:102:99:2019,225,0 chrVIII 21094 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.87;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2417,282,0 chrVIII 21296 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.11;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1964,228,0 chrVIII 21541 . A C 1548 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.10;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1581,183,0 chrVIII 21579 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5584;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.14;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1430,156,0 chrVIII 21580 . C A 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=4.771;HaplotypeScore=4.9679;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.039;QD=18.08;ReadPosRankSum=-0.208;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1425,156,0 chrVIII 21612 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.08;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1136,126,0 chrVIII 21696 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.54;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1408,156,0 chrVIII 21768 . T G 1413 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.74;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1446,165,0 chrVIII 22121 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.3455;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.49;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2205,249,0 chrVIII 22159 . T G 2405 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.22;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2438,276,0 chrVIII 22160 . G C 2408 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.11;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2441,276,0 chrVIII 22203 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.33;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2343,258,0 chrVIII 22253 . T C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=2.917;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.402;QD=20.60;ReadPosRankSum=2.372;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2011,234,0 chrVIII 22430 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=16.97;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1492,168,0 chrVIII 22464 . C A 1672 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.58;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1705,192,0 chrVIII 22684 . T A 869 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.73;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:902,105,0 chrVIII 22697 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.76;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:843,93,0 chrVIII 22766 . T C 707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=4.988;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.733;QD=17.24;ReadPosRankSum=1.648;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:87:740,87,0 chrVIII 22813 . T C 751 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.32;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:90:784,90,0 chrVIII 22833 . G A 748 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=17.40;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:781,87,0 chrVIII 22834 . T G 730 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.98;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:763,87,0 chrVIII 23105 . T C 763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.446;QD=21.19;ReadPosRankSum=1.634;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,34:36:93:796,93,0 chrVIII 23276 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.33;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1440,165,0 chrVIII 23375 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1153,129,0 chrVIII 23518 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.74;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1062,123,0 chrVIII 23522 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.68;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1017,120,0 chrVIII 23641 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1809,210,0 chrVIII 23734 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1293,144,0 chrVIII 23964 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6441;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.78;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1633,177,0 chrVIII 24334 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.22;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1476,168,0 chrVIII 24526 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.45;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1663,189,0 chrVIII 24674 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.55;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1995,219,0 chrVIII 24712 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.04;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1821,198,0 chrVIII 24799 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.50;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1853,216,0 chrVIII 24817 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.82;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1615,186,0 chrVIII 24930 . A G 2220 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.37;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2253,261,0 chrVIII 25004 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.87;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2657,291,0 chrVIII 25276 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2409,267,0 chrVIII 25318 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0543;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.88;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2110,237,0 chrVIII 25348 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.95;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2023,240,0 chrVIII 25432 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.73;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2519,291,0 chrVIII 25522 . G T 2500 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.6517;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.49;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2533,279,0 chrVIII 25552 . C A 2432 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.27;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2465,276,0 chrVIII 25581 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.56;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1613,183,0 chrVIII 25673 . T A 1569 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;DP=97;Dels=0.00;FS=20.419;HaplotypeScore=3.1122;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=1.588;QD=16.18;ReadPosRankSum=2.458;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1602,180,0 chrVIII 25676 . A T 1445 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.007;DP=90;Dels=0.04;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-1.652;QD=16.06;ReadPosRankSum=0.564;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1478,143,0 chrVIII 25677 . C T 1448 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.04;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=16.27;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1481,162,0 chrVIII 25834 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=15.43;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1514,174,0 chrVIII 25897 . T G 933 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4551;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=13.33;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,65:70:99:966,111,0 chrVIII 25898 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=14.85;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1028,111,0 chrVIII 25945 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.92;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1387,153,0 chrVIII 26177 . C T 1725 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.83;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1758,198,0 chrVIII 26183 . G A 1619 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.99;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1652,189,0 chrVIII 26184 . T C 1603 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.04;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1636,189,0 chrVIII 26678 . A G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=97;Dels=0.00;FS=2.903;HaplotypeScore=14.9393;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.090;QD=18.03;ReadPosRankSum=2.322;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1782,207,0 chrVIII 27080 . A G 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.594;QD=19.99;ReadPosRankSum=1.663;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2032,240,0 chrVIII 27470 . A C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.051;QD=18.64;ReadPosRankSum=1.698;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1916,216,0 chrVIII 27972 . A C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=5.828;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.039;QD=20.24;ReadPosRankSum=1.693;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1814,213,0 chrVIII 27988 . A C 1471 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.10;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1504,177,0 chrVIII 27996 . T G 1164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=16.87;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1197,141,0 chrVIII 28030 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=17.95;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1074,120,0 chrVIII 28073 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.04;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1115,123,0 chrVIII 28143 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.58;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1681,192,0 chrVIII 28335 . A G 1103 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=18.69;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1136,132,0 chrVIII 28356 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=15.23;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1267,150,0 chrVIII 28362 . G T 1411 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=17.64;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1444,162,0 chrVIII 28416 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=13.55;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1374,159,0 chrVIII 28452 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.10;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1608,186,0 chrVIII 28477 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.42;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1723,195,0 chrVIII 28758 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6797;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.05;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1596,177,0 chrVIII 29091 . G C 1630 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1663,192,0 chrVIII 29141 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2041,231,0 chrVIII 29289 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.46;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2285,249,0 chrVIII 29671 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.99;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1460,165,0 chrVIII 29709 . T A 1348 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.82;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1381,153,0 chrVIII 29763 . C T 768 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.07;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:801,90,0 chrVIII 29799 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.121;QD=18.61;ReadPosRankSum=1.664;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:982,111,0 chrVIII 29863 . G A 874 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:907,99,0 chrVIII 30051 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.26;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1547,174,0 chrVIII 30119 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.41;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1703,195,0 chrVIII 30198 . A G 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.106;QD=21.53;ReadPosRankSum=1.662;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1088,120,0 chrVIII 30386 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.64;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1722,186,0 chrVIII 30556 . T C 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=3.768;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.069;QD=18.40;ReadPosRankSum=1.663;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:953,108,0 chrVIII 30642 . T G 946 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.57;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:979,111,0 chrVIII 30659 . T C 920 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.00;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:953,108,0 chrVIII 30979 . C T 852 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.78;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:885,102,0 chrVIII 31011 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.76;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:989,111,0 chrVIII 31041 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.46;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1417,159,0 chrVIII 31175 . A C 1765 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.52;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1798,210,0 chrVIII 31191 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.44;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1666,192,0 chrVIII 31196 . T G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.150;QD=18.98;ReadPosRankSum=1.689;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1570,180,0 chrVIII 31905 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.52;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1829,210,0 chrVIII 31957 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.0274;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.96;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2297,255,0 chrVIII 32029 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.98;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1836,213,0 chrVIII 32578 . C G 1207 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=16.53;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1240,144,0 chrVIII 32614 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.85;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1122,126,0 chrVIII 32625 . G A 1149 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1182,129,0 chrVIII 32783 . T G 1489 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.571;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1908;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.282;QD=16.73;ReadPosRankSum=1.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1522,177,0 chrVIII 32801 . T G 1355 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1388,153,0 chrVIII 32836 . G T 469 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.42;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,44:45:57:502,57,0 chrVIII 32859 . G A 101.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.88;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:134,15,0 chrVIII 32992 . G A 339 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:42:372,42,0 chrVIII 33105 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.67;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:929,105,0 chrVIII 33167 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=26.35;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1667,180,0 chrVIII 33337 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1017,114,0 chrVIII 33397 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1215,135,0 chrVIII 33927 . C G 1058 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.1708;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=15.79;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1091,129,0 chrVIII 34071 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=14.91;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1032,117,0 chrVIII 34347 . A G 691 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=15.36;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:724,84,0 chrVIII 34368 . A G 699 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.92;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:732,84,0 chrVIII 34469 . T G 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.846;DP=73;Dels=0.00;FS=26.550;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.095;QD=18.16;ReadPosRankSum=3.947;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:6,67:73:99:1359,153,0 chrVIII 34565 . G C 1792 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.04;FS=0.000;HaplotypeScore=16.3846;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=21.33;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1825,213,0 chrVIII 34629 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.87;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2014,231,0 chrVIII 34710 . A G 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=4.983;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.742;QD=18.12;ReadPosRankSum=1.677;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1193,141,0 chrVIII 35149 . C T 2082 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.10;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2115,240,0 chrVIII 35271 . T G 1233 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1266,144,0 chrVIII 35378 . A G 825 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=1;QD=20.12;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:858,102,0 chrVIII 35681 . A G 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=3.012;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=0.107;QD=19.01;ReadPosRankSum=2.402;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2010,234,0 chrVIII 35762 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=18.05;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1206,135,0 chrVIII 35768 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=1;QD=16.58;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1144,129,0 chrVIII 35854 . C A 839 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=2;QD=15.54;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:872,99,0 chrVIII 35975 . A G 637 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=13.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:78:670,78,0 chrVIII 36028 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=14.12;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:866,99,0 chrVIII 36040 . T C 808 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=14.43;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:96:841,96,0 chrVIII 36042 . T G 794 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=14.18;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:96:827,96,0 chrVIII 36073 . C T 629 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;QD=16.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:72:662,72,0 chrVIII 36088 . G A 414 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=12.18;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:51:447,51,0 chrVIII 36128 . T C 176.03 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.39;MQ0=0;QD=8.80;SB=-4.089e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:209,24,0 chrVIII 36203 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=2.64;SB=-2.971e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrVIII 36306 . C T 581 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.03;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:72:614,72,0 chrVIII 36501 . C G 632 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.79;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:665,78,0 chrVIII 36667 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.14;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1893,219,0 chrVIII 37057 . C A 2031 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.2760;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.46;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2064,240,0 chrVIII 37489 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.20;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2852,321,0 chrVIII 37675 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.87;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2454,291,0 chrVIII 37789 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.32;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2140,240,0 chrVIII 37876 . T C 2838 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.57;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2871,330,0 chrVIII 37897 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=141;Dels=0.00;FS=3.437;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.237;QD=16.55;ReadPosRankSum=1.707;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2366,285,0 chrVIII 37900 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=15.38;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2109,249,0 chrVIII 37931 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.0476;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.46;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2163,252,0 chrVIII 38190 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.44;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1829,210,0 chrVIII 38191 . G A 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;DP=107;Dels=0.00;FS=3.762;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.275;QD=16.11;ReadPosRankSum=-0.923;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1757,181,0 chrVIII 38260 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=13.94;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1329,150,0 chrVIII 38427 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.16;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2069,237,0 chrVIII 38887 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=102;Dels=0.00;FS=2.548;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.158;QD=21.41;ReadPosRankSum=2.931;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2217,255,0 chrVIII 39238 . G C 2112 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.91;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2145,246,0 chrVIII 39327 . A G 1045 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=14.51;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1078,123,0 chrVIII 39521 . C G 939 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=51.7778;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=13.23;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:71:99:972,114,0 chrVIII 39688 . G A 699 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.05;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:732,81,0 chrVIII 39727 . T C 766 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.65;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:90:799,90,0 chrVIII 39758 . T C 727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.00;FS=4.087;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.127;QD=17.31;ReadPosRankSum=1.648;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:84:760,84,0 chrVIII 39822 . G T 730 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.22;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:763,84,0 chrVIII 39825 . A G 669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.654;QD=14.87;ReadPosRankSum=1.655;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:81:702,81,0 chrVIII 39912 . G A 864 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.20;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:897,102,0 chrVIII 39974 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.35;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1207,132,0 chrVIII 40173 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.91;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1110,123,0 chrVIII 40215 . A G 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=6.6663;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.335;QD=17.30;ReadPosRankSum=1.675;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1088,123,0 chrVIII 40269 . C T 863 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=14.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:896,99,0 chrVIII 40287 . T C 677 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=11.67;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:84:710,84,0 chrVIII 40290 . G A 668 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=13.10;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:701,78,0 chrVIII 40291 . C T 673 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=13.20;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:706,78,0 chrVIII 40645 . C T 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.483;QD=18.93;ReadPosRankSum=-0.540;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1188,129,0 chrVIII 40899 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=14.90;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:778,90,0 chrVIII 40917 . T C 792 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=15.84;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:825,96,0 chrVIII 41245 . T A 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=47;Dels=0.00;FS=3.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.578;QD=17.74;ReadPosRankSum=1.578;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:867,99,0 chrVIII 41310 . T C 906 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.28;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:939,108,0 chrVIII 41694 . T A 1115 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.15;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1148,135,0 chrVIII 41712 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.47;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1219,135,0 chrVIII 42222 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.76;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1778,201,0 chrVIII 42238 . A G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=4.260;HaplotypeScore=5.8255;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.866;QD=18.21;ReadPosRankSum=1.696;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1781,207,0 chrVIII 42594 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6493;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.44;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2636,294,0 chrVIII 42754 . G C 2287 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2320,270,0 chrVIII 42946 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.15;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1988,228,0 chrVIII 43050 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.21;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1877,216,0 chrVIII 43257 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.08;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1338,147,0 chrVIII 43362 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.84;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1263,144,0 chrVIII 43405 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.13;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1353,147,0 chrVIII 43591 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.16;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1125,123,0 chrVIII 43608 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.45;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1178,129,0 chrVIII 43773 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.38;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1293,144,0 chrVIII 43881 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.88;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2112,237,0 chrVIII 43928 . G T 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=88;Dels=0.00;FS=6.173;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.692;QD=23.35;ReadPosRankSum=1.254;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2088,234,0 chrVIII 43968 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.66;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1874,210,0 chrVIII 44529 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.71;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1590,183,0 chrVIII 44670 . A G 1532 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.90;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1565,180,0 chrVIII 44691 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.55;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1313,144,0 chrVIII 44706 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.57;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1077,120,0 chrVIII 44713 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.85;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1063,120,0 chrVIII 44969 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.99;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1943,225,0 chrVIII 45003 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.05;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2201,249,0 chrVIII 45156 . T C 1991 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.89;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2024,237,0 chrVIII 45250 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1575,186,0 chrVIII 46055 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=73;Dels=0.00;FS=7.241;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.084;QD=17.49;ReadPosRankSum=2.382;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1310,150,0 chrVIII 46337 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.56;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1801,213,0 chrVIII 46457 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.74;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1642,189,0 chrVIII 46562 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.36;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1336,156,0 chrVIII 46943 . T C 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=119;Dels=0.00;FS=2.963;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.421;QD=19.61;ReadPosRankSum=2.407;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,112:119:99:2366,276,0 chrVIII 47072 . A G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.847;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.482;QD=21.03;ReadPosRankSum=1.696;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2073,237,0 chrVIII 47171 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.98;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2691,309,0 chrVIII 48147 . C T 1928 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;QD=12.77;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1961,225,0 chrVIII 48148 . A C 1943 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=151;Dels=0.00;FS=8.366;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.71;MQ0=0;MQRankSum=-0.929;QD=12.87;ReadPosRankSum=1.709;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:1976,222,0 chrVIII 48154 . T C 1801 SnpCluster AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=11.93;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:1834,207,0 chrVIII 48187 . G A 2485 PASS AC=2;AF=1.00;AN=2;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=12.81;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,194:194:99:2518,291,0 chrVIII 48220 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.397;DP=141;Dels=0.00;FS=16.624;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;MQRankSum=-0.432;QD=11.30;ReadPosRankSum=1.495;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:7,134:141:99:1626,160,0 chrVIII 48256 . G T 54.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=116;Dels=0.00;FS=1.622;HaplotypeScore=97.8157;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=0;MQRankSum=4.514;QD=0.47;ReadPosRankSum=-5.050;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:103,10:116:84:84,0,220 chrVIII 48299 . T C 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.712;QD=13.17;ReadPosRankSum=1.581;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:968,111,0 chrVIII 48365 . T G 1024 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=17.07;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1057,123,0 chrVIII 48551 . A G 3512.01 PASS AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=17.13;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,205:205:99:3512,399,0 chrVIII 48651 . T C 3135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.544;QD=22.55;ReadPosRankSum=1.707;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,136:139:99:3168,360,0 chrVIII 48921 . A T 1515 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.64;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1548,174,0 chrVIII 48939 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.08;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1459,168,0 chrVIII 48949 . A G 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-1.732;QD=19.09;ReadPosRankSum=1.688;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1522,180,0 chrVIII 49017 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6754;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.37;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2500,288,0 chrVIII 49158 . A G 3348.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.80;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3348,393,0 chrVIII 49374 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;DP=179;Dels=0.00;FS=9.947;HaplotypeScore=9.1966;MLEAC=1;MLEAF=0.500;MQ=41.76;MQ0=0;MQRankSum=-6.102;QD=0.26;ReadPosRankSum=2.071;SB=-5.810e+02 GT:AD:DP:GQ:PL 0/1:97,81:179:76:76,0,930 chrVIII 49378 . T A 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;DP=182;Dels=0.00;FS=8.388;HaplotypeScore=12.0319;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=0;MQRankSum=-3.300;QD=0.32;ReadPosRankSum=1.762;SB=-6.640e+02 GT:AD:DP:GQ:PL 0/1:87,94:182:88:88,0,935 chrVIII 49395 . G C 321.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.767;DP=197;Dels=0.00;FS=35.367;HaplotypeScore=14.8918;MLEAC=1;MLEAF=0.500;MQ=43.91;MQ0=0;MQRankSum=-3.470;QD=1.63;ReadPosRankSum=-6.179;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:133,64:197:99:351,0,784 chrVIII 49398 . C T 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.227;DP=172;Dels=0.00;FS=36.660;HaplotypeScore=14.9264;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=0;MQRankSum=-2.442;QD=0.58;ReadPosRankSum=-1.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:141,31:172:99:130,0,879 chrVIII 49399 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;DP=169;Dels=0.00;FS=26.757;HaplotypeScore=13.3490;MLEAC=1;MLEAF=0.500;MQ=45.91;MQ0=0;MQRankSum=-1.033;QD=0.07;ReadPosRankSum=-0.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,26:169:41:41,0,888 chrVIII 49400 . T C 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;DP=169;Dels=0.00;FS=24.440;HaplotypeScore=12.3658;MLEAC=1;MLEAF=0.500;MQ=45.91;MQ0=0;MQRankSum=-2.522;QD=0.15;ReadPosRankSum=-0.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,24:169:56:56,0,935 chrVIII 49483 . T A 457.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=152;Dels=0.00;FS=17.257;HaplotypeScore=80.8649;MLEAC=1;MLEAF=0.500;MQ=52.76;MQ0=0;MQRankSum=-0.446;QD=3.01;ReadPosRankSum=-5.266;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/1:94,58:152:56:487,0,56 chrVIII 49510 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.5939;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=11.29;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:1805,204,0 chrVIII 49626 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.5405;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.40;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2243,261,0 chrVIII 49719 . C T 2984 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2762;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=19.50;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3017,336,0 chrVIII 49817 . A C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.024;QD=20.39;ReadPosRankSum=1.693;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1827,213,0 chrVIII 49899 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=15.71;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1714,204,0 chrVIII 50050 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.882;DP=95;Dels=0.00;FS=5.871;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.968;QD=15.93;ReadPosRankSum=2.925;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:3,91:95:99:1546,183,0 chrVIII 50268 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.64;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2572,294,0 chrVIII 50281 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=5.643;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.360;QD=20.81;ReadPosRankSum=1.646;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2551,294,0 chrVIII 50321 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.64;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1990,219,0 chrVIII 50351 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.39;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1606,186,0 chrVIII 50566 . C G 2126 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.49;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2159,249,0 chrVIII 50710 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.33;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1628,186,0 chrVIII 50752 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.10;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1279,147,0 chrVIII 51012 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.9357;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.26;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1877,216,0 chrVIII 51055 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=9.263;HaplotypeScore=6.4321;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.120;QD=22.42;ReadPosRankSum=2.396;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2096,240,0 chrVIII 51089 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.20;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2075,234,0 chrVIII 51217 . A G 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.9378;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.700;QD=23.55;ReadPosRankSum=0.449;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2623,300,0 chrVIII 51309 . T G 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.284;QD=18.05;ReadPosRankSum=1.706;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2452,291,0 chrVIII 51314 . C A 2532 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.76;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2565,291,0 chrVIII 51344 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.2555;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.68;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1985,228,0 chrVIII 51378 . A T 2064 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.64;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2097,231,0 chrVIII 51441 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.8473;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=16.77;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1626,186,0 chrVIII 51470 . G T 1603 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=13.58;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1636,180,0 chrVIII 51686 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.38;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1745,192,0 chrVIII 51773 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=14.17;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1096,126,0 chrVIII 51856 . G T 1587 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.00;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1620,180,0 chrVIII 51891 . T A 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.023;QD=19.61;ReadPosRankSum=1.686;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1543,180,0 chrVIII 51937 . C G 1521 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.73;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1554,174,0 chrVIII 52161 . G A 2893 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.2556;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.23;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2926,327,0 chrVIII 52183 . G A 2614 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.3499;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.03;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2647,300,0 chrVIII 52666 . G A 2884 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5778;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.03;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2917,324,0 chrVIII 52712 . C T 3015 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.2422;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.69;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3048,336,0 chrVIII 52980 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=19.71;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1452,165,0 chrVIII 52993 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=17.88;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1213,132,0 chrVIII 52999 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=18.00;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1077,123,0 chrVIII 53006 . T A 923 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=14.42;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:956,111,0 chrVIII 53107 . A G 2624 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.24;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2657,303,0 chrVIII 53214 . T C 3077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.274;QD=22.62;ReadPosRankSum=1.707;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3110,357,0 chrVIII 53483 . G A 2618 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.94;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2651,300,0 chrVIII 53579 . T C 2168 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2201,255,0 chrVIII 53843 . T C 1248 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.91;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1281,147,0 chrVIII 53879 . A T 1111 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.52;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1144,129,0 chrVIII 53882 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=18.03;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1097,120,0 chrVIII 54035 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.23;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1519,168,0 chrVIII 54138 . G T 1140 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.00;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1173,129,0 chrVIII 54245 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.81;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1387,162,0 chrVIII 54264 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=17.28;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1260,138,0 chrVIII 54302 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.85;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1390,153,0 chrVIII 54591 . C A 1039 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1072,120,0 chrVIII 54840 . G A 2764 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.94;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2797,315,0 chrVIII 55297 . A G 2814 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.32;SB=-1.630e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2847,321,0 chrVIII 56032 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.24;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1341,150,0 chrVIII 56225 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.47;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1301,153,0 chrVIII 56250 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=16.49;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1484,168,0 chrVIII 56364 . T G 1355 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.36;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1388,162,0 chrVIII 56430 . C G 251.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530;DP=60;Dels=0.00;FS=1.023;HaplotypeScore=62.1184;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=0;MQRankSum=-0.467;QD=4.18;ReadPosRankSum=3.530;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:29,29:60:34:281,0,34 chrVIII 56433 . T A 88.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.822;DP=53;Dels=0.00;FS=4.576;HaplotypeScore=54.1878;MLEAC=1;MLEAF=0.500;MQ=35.80;MQ0=0;MQRankSum=-1.478;QD=1.66;ReadPosRankSum=-4.848;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:40,13:53:56:118,0,56 chrVIII 56439 . C T 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.540;DP=53;Dels=0.00;FS=10.305;HaplotypeScore=56.8615;MLEAC=1;MLEAF=0.500;MQ=34.72;MQ0=0;MQRankSum=-0.563;QD=1.55;ReadPosRankSum=-4.984;SB=-6.533e-03 GT:AD:DP:GQ:PL 0/1:41,12:53:52:112,0,52 chrVIII 56538 . T A 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=78;Dels=0.00;FS=8.774;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.276;QD=18.68;ReadPosRankSum=2.353;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1490,162,0 chrVIII 56604 . G A 2620 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.26;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2653,291,0 chrVIII 57272 . T C 1081 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1114,129,0 chrVIII 58390 . A G 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=4.138;HaplotypeScore=116.4317;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=-0.872;QD=15.92;ReadPosRankSum=1.709;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2468,285,0 chrVIII 58451 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=14.64;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1687,186,0 chrVIII 58620 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=15.33;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1290,147,0 chrVIII 58670 . A C 900 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=9.18;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:933,108,0 chrVIII 58676 . A G 918 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.755;DP=106;Dels=0.00;FS=7.738;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;MQRankSum=-2.772;QD=8.66;ReadPosRankSum=3.755;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:5,101:106:99:951,111,0 chrVIII 58677 . A G 972 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=9.35;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1005,117,0 chrVIII 58688 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=9.14;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1093,129,0 chrVIII 58724 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;QD=11.20;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:1545,180,0 chrVIII 58733 . A T 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=1.608;QD=12.35;ReadPosRankSum=1.707;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1762,195,0 chrVIII 58904 . T C 134.03 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.785;DP=66;Dels=0.00;FS=1.257;HaplotypeScore=4.9367;MLEAC=1;MLEAF=0.500;MQ=56.41;MQ0=0;MQRankSum=1.635;QD=2.03;ReadPosRankSum=-3.940;SB=-2.818e-02 GT:AD:DP:GQ:PL 0/1:55,11:66:20:164,0,20 chrVIII 59019 . T A 1803 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.85;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1836,213,0 chrVIII 59106 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.022;QD=18.79;ReadPosRankSum=1.599;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1499,177,0 chrVIII 59575 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.25;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1207,135,0 chrVIII 59614 . T C 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=2.916;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.806;QD=19.87;ReadPosRankSum=2.394;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1782,204,0 chrVIII 59645 . T C 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.299;QD=18.34;ReadPosRankSum=1.696;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,95:99:99:1849,213,0 chrVIII 59801 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.74;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2303,264,0 chrVIII 59916 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9812;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.32;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1733,192,0 chrVIII 59936 . G C 1428 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=15.35;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1461,168,0 chrVIII 60173 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.88;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1663,195,0 chrVIII 60785 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.70;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1254,138,0 chrVIII 61049 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.28;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1108,123,0 chrVIII 62455 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.04;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2200,243,0 chrVIII 62674 . A G 848 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=13.46;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:881,99,0 chrVIII 62706 . C T 859 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;MQRankSum=-1.604;QD=15.62;ReadPosRankSum=1.604;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:892,99,0 chrVIII 62711 . A C 804 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.07;MQ0=0;MQRankSum=-1.666;QD=15.46;ReadPosRankSum=1.666;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:96:837,96,0 chrVIII 62715 . C G 782 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=14.48;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:815,96,0 chrVIII 62722 . C T 812 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=15.62;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:93:845,93,0 chrVIII 62730 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=17.39;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1094,120,0 chrVIII 62734 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=16.48;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1088,123,0 chrVIII 63097 . G A 673 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.21;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:706,84,0 chrVIII 63144 . T C 668 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.65;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:701,81,0 chrVIII 63183 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.96;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1273,144,0 chrVIII 63322 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.09;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1465,174,0 chrVIII 63396 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.70;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1689,192,0 chrVIII 63422 . G T 1431 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.11;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1464,165,0 chrVIII 63554 . T C 2030 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.60;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2063,237,0 chrVIII 63582 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.72;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1877,216,0 chrVIII 63645 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=3.051;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.447;QD=21.06;ReadPosRankSum=2.379;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1486,168,0 chrVIII 63684 . G T 1187 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1220,135,0 chrVIII 64236 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.74;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1101,123,0 chrVIII 64360 . A T 997 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=16.90;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1030,120,0 chrVIII 64407 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=23.16;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1075,123,0 chrVIII 64564 . T C 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=2.899;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.024;QD=21.40;ReadPosRankSum=2.280;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1274,150,0 chrVIII 64748 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.04;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1007,117,0 chrVIII 64753 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.20;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1005,117,0 chrVIII 65200 . A G 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.97;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1471,171,0 chrVIII 65380 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.60;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1413,159,0 chrVIII 65566 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.1569;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.03;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1308,150,0 chrVIII 66254 . A G 3799.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=163;Dels=0.00;FS=9.058;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=-0.032;QD=23.31;ReadPosRankSum=1.711;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,160:163:99:3799,444,0 chrVIII 66280 . C T 2658 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=22.91;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2691,306,0 chrVIII 66551 . C T 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.515;DP=130;Dels=0.00;FS=4.815;HaplotypeScore=44.8863;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=5.139;QD=11.87;ReadPosRankSum=4.735;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:25,104:130:99:1576,113,0 chrVIII 66575 . C T 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4177;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=-0.673;QD=10.27;ReadPosRankSum=1.335;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,157:158:99:1655,186,0 chrVIII 66694 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.528;QD=15.26;ReadPosRankSum=1.664;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1590,186,0 chrVIII 66700 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=15.11;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1635,177,0 chrVIII 67629 . G T 1215 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=15.1037;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=11.46;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1248,147,0 chrVIII 68080 . C G 1675 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.26;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1708,195,0 chrVIII 68352 . T C 985 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.28;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1018,114,0 chrVIII 68508 . A C 1772 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=19.47;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1805,210,0 chrVIII 68532 . A G 1867 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.29;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1900,219,0 chrVIII 69180 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.21;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1892,210,0 chrVIII 69830 . A G 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.262;QD=18.43;ReadPosRankSum=1.689;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1526,171,0 chrVIII 70052 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.61;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1680,186,0 chrVIII 70542 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=3.288;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.609;QD=18.93;ReadPosRankSum=1.640;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2172,246,0 chrVIII 71457 . T C 3725.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=10.6517;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.212;QD=20.69;ReadPosRankSum=1.713;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,179:180:99:3725,438,0 chrVIII 71610 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.2459;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.37;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3089,354,0 chrVIII 71900 . A G 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;DP=115;Dels=0.00;FS=2.547;HaplotypeScore=14.2076;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.631;QD=8.17;ReadPosRankSum=-0.252;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:4,111:115:99:973,111,0 chrVIII 71979 . A G 2562 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=15.81;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:2595,297,0 chrVIII 71994 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=15.90;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:2530,294,0 chrVIII 72011 . G A 2294 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=16.62;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2327,264,0 chrVIII 72058 . T C 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.553;QD=19.23;ReadPosRankSum=1.695;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1879,216,0 chrVIII 72171 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.64;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1550,171,0 chrVIII 72247 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=23.00;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1804,204,0 chrVIII 72400 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.58;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1749,204,0 chrVIII 72478 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.37;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1249,144,0 chrVIII 72487 . A G 1032 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.40;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1065,126,0 chrVIII 72547 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.47;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1357,150,0 chrVIII 72569 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.22;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1821,207,0 chrVIII 72635 . G T 1792 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.97;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1825,198,0 chrVIII 72697 . C G 1525 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.55;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1558,180,0 chrVIII 72739 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.94;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1666,192,0 chrVIII 72757 . T A 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=3.025;HaplotypeScore=5.0846;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.304;QD=18.59;ReadPosRankSum=2.207;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1167,132,0 chrVIII 72759 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.1281;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.20;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1125,132,0 chrVIII 72808 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=14.29;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:919,105,0 chrVIII 72925 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.840;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.640;QD=19.19;ReadPosRankSum=1.694;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1818,213,0 chrVIII 73129 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.49;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2021,231,0 chrVIII 73264 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.497;QD=19.80;ReadPosRankSum=1.664;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2033,231,0 chrVIII 73285 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.64;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1761,198,0 chrVIII 73636 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.97;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2050,231,0 chrVIII 73687 . C A 1850 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.89;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1883,216,0 chrVIII 73735 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.33;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1243,144,0 chrVIII 73741 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=18.74;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1251,138,0 chrVIII 73929 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.11;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2040,231,0 chrVIII 74014 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.11;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1734,195,0 chrVIII 74059 . T G 1317 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=19.37;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1350,159,0 chrVIII 74089 . A G 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=2.911;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-1.234;QD=15.73;ReadPosRankSum=2.303;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1087,126,0 chrVIII 74101 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=14.30;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:948,108,0 chrVIII 74246 . C T 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.0724;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.658;QD=17.85;ReadPosRankSum=1.024;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1711,189,0 chrVIII 74339 . C G 1737 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=20.20;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1770,207,0 chrVIII 74372 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=19.48;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1319,153,0 chrVIII 74400 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=16.87;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1231,147,0 chrVIII 74409 . A T 1248 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=17.83;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1281,150,0 chrVIII 74435 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=16.67;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1350,162,0 chrVIII 74445 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.96;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1118,129,0 chrVIII 74477 . C A 1298 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=15.83;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1331,150,0 chrVIII 74519 . G A 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5805;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.258;QD=17.62;ReadPosRankSum=-0.018;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1707,189,0 chrVIII 74573 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.61;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1931,216,0 chrVIII 74611 . T C 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=5.478;HaplotypeScore=5.1378;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.174;QD=15.31;ReadPosRankSum=2.725;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1549,177,0 chrVIII 74618 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=6.0787;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=14.93;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1630,183,0 chrVIII 74631 . C G 1384 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=3.3001;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=13.18;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1417,159,0 chrVIII 74649 . A G 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-1.242;QD=11.93;ReadPosRankSum=1.697;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1214,141,0 chrVIII 74714 . T C 893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;MQRankSum=0.929;QD=12.94;ReadPosRankSum=1.682;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:926,111,0 chrVIII 74727 . C T 827 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=12.53;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:860,102,0 chrVIII 74730 . T C 808 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=12.62;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:841,102,0 chrVIII 74734 . C G 800 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=12.90;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:833,102,0 chrVIII 74755 . A G 877 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=13.70;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:910,108,0 chrVIII 74776 . G C 1382 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=18.18;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1415,162,0 chrVIII 74846 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.38;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2010,219,0 chrVIII 74924 . A T 1473 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.13;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1506,168,0 chrVIII 74975 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=16.61;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1262,138,0 chrVIII 75040 . C A 1253 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=18.70;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1286,147,0 chrVIII 75064 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=20.41;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1217,141,0 chrVIII 75092 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=21.29;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1225,141,0 chrVIII 75147 . A G 790 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.79;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:823,99,0 chrVIII 75639 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.54;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1049,120,0 chrVIII 75768 . T C 619 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=15.87;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:75:652,75,0 chrVIII 75835 . A G 707 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:84:740,84,0 chrVIII 76093 . C A 649 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=15.83;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:75:682,75,0 chrVIII 76095 . A G 680 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=16.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:81:713,81,0 chrVIII 76139 . G A 634 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:78:667,78,0 chrVIII 76606 . C G 1964 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.07;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1997,231,0 chrVIII 76673 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.18;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1356,153,0 chrVIII 76691 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=15.35;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1230,141,0 chrVIII 76739 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.97;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1399,162,0 chrVIII 76796 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1331,153,0 chrVIII 76976 . C A 2445 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.08;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2478,279,0 chrVIII 77201 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.2788;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.28;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1479,162,0 chrVIII 77306 . A G 3328.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=11.6038;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.46;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,168:171:99:3328,384,0 chrVIII 78803 . T G 833 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.14;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:866,99,0 chrVIII 79037 . A G 958 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.38;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:991,114,0 chrVIII 79208 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.34;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1387,159,0 chrVIII 79756 . T A 1292 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.90;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1325,147,0 chrVIII 79894 . T A 2154 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.21;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2187,243,0 chrVIII 79994 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.55;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1964,216,0 chrVIII 80077 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.63;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1662,192,0 chrVIII 80210 . G C 1408 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1441,165,0 chrVIII 80249 . G T 1888 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.09;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1921,210,0 chrVIII 80285 . T C 2096 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8320;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.39;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2129,243,0 chrVIII 80825 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1310,150,0 chrVIII 81685 . A G 1953 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.08;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1986,231,0 chrVIII 82048 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1215,141,0 chrVIII 82351 . A C 1532 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.15;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1565,183,0 chrVIII 82486 . G C 1418 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1451,165,0 chrVIII 82588 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.14;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1893,213,0 chrVIII 83441 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.41;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1403,153,0 chrVIII 84663 . C G 867 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=19.27;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:900,105,0 chrVIII 84686 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=19.03;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:775,90,0 chrVIII 84687 . T C 695 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=17.82;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:728,84,0 chrVIII 84699 . A G 603 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=16.30;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:72:636,72,0 chrVIII 84708 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=12.20;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:72:631,72,0 chrVIII 84777 . A C 2102 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.62;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2135,249,0 chrVIII 84820 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.35;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1441,168,0 chrVIII 84829 . T C 964 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.08;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:997,117,0 chrVIII 84887 . T C 739 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.45;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:772,90,0 chrVIII 84920 . C T 585 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.50;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:618,69,0 chrVIII 84969 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.66;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:726,81,0 chrVIII 85109 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=21.19;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1495,174,0 chrVIII 85132 . C T 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.393;QD=19.81;ReadPosRankSum=1.316;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1519,171,0 chrVIII 85155 . G T 1196 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.69;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1229,135,0 chrVIII 85185 . G T 1141 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.83;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1174,135,0 chrVIII 85374 . A G 682 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=1;QD=20.06;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:715,84,0 chrVIII 87112 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.34;MQ0=48;QD=0.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:57:6:49,6,0 chrVIII 87382 . G A 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.21;MQ0=70;MQRankSum=3.366;QD=0.60;ReadPosRankSum=1.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:53,31:85:9:83,9,0 chrVIII 89143 . C T 727 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=18.19;MQ0=54;QD=8.17;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:90:760,90,0 chrVIII 89211 . A G 384 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.42;MQ0=7;QD=13.71;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:48:417,48,0 chrVIII 89216 . G A 317 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=7;QD=15.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:39:350,39,0 chrVIII 89436 . T A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.80;MQ0=19;QD=0.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:6:53,6,0 chrVIII 89437 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.07;MQ0=18;QD=0.86;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,21:22:6:50,6,0 chrVIII 89444 . A G 64.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.91;MQ0=20;QD=2.30;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:12:97,12,0 chrVIII 89492 . C A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.57;MQ0=25;MQRankSum=-1.929;QD=0.84;ReadPosRankSum=-0.540;SB=-6.863e-03 GT:AD:DP:GQ:PL 0/1:17,21:38:38:62,0,38 chrVIII 89515 . A G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.91;MQ0=25;MQRankSum=-1.268;QD=2.03;ReadPosRankSum=1.606;SB=-8.636e-03 GT:AD:DP:GQ:PL 0/1:18,20:38:30:107,0,30 chrVIII 89516 . C T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.32;MQ0=26;MQRankSum=-0.788;QD=2.02;ReadPosRankSum=1.395;SB=-8.027e-03 GT:AD:DP:GQ:PL 0/1:19,23:42:31:115,0,31 chrVIII 89545 . C T 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.93;MQ0=33;MQRankSum=0.107;QD=1.40;ReadPosRankSum=-1.611;SB=0.059 GT:AD:DP:GQ:PL 0/1:18,27:45:30:93,0,30 chrVIII 92155 . C T 152.06 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=0;QD=4.47;SB=-2.091e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:185,21,0 chrVIII 92232 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=21.94;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1393,153,0 chrVIII 92289 . G A 528 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=15.53;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:561,66,0 chrVIII 92299 . G A 379 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=14.04;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:412,48,0 chrVIII 92307 . A G 270 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;MQRankSum=-1.432;QD=11.74;ReadPosRankSum=1.432;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:36:303,36,0 chrVIII 92312 . A G 265 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=12.05;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:298,36,0 chrVIII 92313 . A G 241 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=10.95;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:274,33,0 chrVIII 92385 . G A 813 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=21.97;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:846,96,0 chrVIII 92406 . T C 849 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=20.71;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:882,102,0 chrVIII 92522 . A T 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;DP=71;Dels=0.00;FS=5.290;HaplotypeScore=8.2306;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=1.683;QD=21.62;ReadPosRankSum=1.293;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1568,180,0 chrVIII 92608 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=22.54;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2129,237,0 chrVIII 92658 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=22.16;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1008,120,0 chrVIII 92663 . T C 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;MQRankSum=-0.887;QD=21.07;ReadPosRankSum=-0.718;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:897,108,0 chrVIII 92677 . T A 433 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=18.83;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:466,54,0 chrVIII 92692 . T G 271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=5.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;MQRankSum=-0.434;QD=16.94;ReadPosRankSum=1.519;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:36:304,36,0 chrVIII 92702 . C T 242 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.45;MQ0=0;QD=16.13;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:275,33,0 chrVIII 92759 . A C 1459 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=23.16;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1492,174,0 chrVIII 92864 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.24;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1803,204,0 chrVIII 92927 . G T 1912 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.12;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1945,225,0 chrVIII 92971 . T C 1276 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=17.24;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1309,156,0 chrVIII 92978 . C G 1063 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=16.61;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1096,135,0 chrVIII 92981 . C T 954 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=15.39;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:987,123,0 chrVIII 93014 . G C 328 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=12.15;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:45:361,45,0 chrVIII 93026 . T C 293 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=15.42;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:326,39,0 chrVIII 93033 . C T 217.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=13.56;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:250,27,0 chrVIII 93035 . G A 209.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=13.06;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:242,27,0 chrVIII 93037 . T C 194.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=12.13;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:227,27,0 chrVIII 93055 . A G 199.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;MQRankSum=0.800;QD=7.65;ReadPosRankSum=1.600;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,25:26:27:232,27,0 chrVIII 93056 . A G 149.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=5.96;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:182,21,0 chrVIII 93062 . A G 123.13 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=4.25;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:18:156,18,0 chrVIII 93068 . A G 202.01 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.97;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:27:235,27,0 chrVIII 93086 . C T 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.39;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:407,45,0 chrVIII 93088 . T C 349 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.69;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:45:382,45,0 chrVIII 93095 . A G 335 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.82;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:42:368,42,0 chrVIII 93101 . T C 363 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.44;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:45:396,45,0 chrVIII 93125 . C T 417 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.87;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:51:450,51,0 chrVIII 93128 . G C 440 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.48;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:54:473,54,0 chrVIII 93136 . C T 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.30;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:373,42,0 chrVIII 93137 . C T 347 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.52;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:380,42,0 chrVIII 93140 . C T 338 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.24;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:371,42,0 chrVIII 93143 . T C 330 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.00;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:363,42,0 chrVIII 93146 . T C 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.03;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:42:364,42,0 chrVIII 93151 . T C 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.72;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:42:373,42,0 chrVIII 93153 . T C 323 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.14;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:42:356,42,0 chrVIII 93158 . G A 331 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.73;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:364,39,0 chrVIII 93159 . T A 328 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.62;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:361,39,0 chrVIII 93161 . C T 307 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.81;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:340,39,0 chrVIII 93163 . C T 318 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.23;SB=-7.612e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:39:351,39,0 chrVIII 93164 . G C 297 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=11.00;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:330,39,0 chrVIII 93199 . C G 348 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=8.92;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:45:381,45,0 chrVIII 93209 . A G 399 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.78;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:432,51,0 chrVIII 93251 . C T 611 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;QD=16.51;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:75:644,75,0 chrVIII 93257 . C T 665 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=26.54;MQ0=0;QD=17.50;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:698,81,0 chrVIII 93284 . A G 368 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=11.87;SB=-9.001e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:51:401,51,0 chrVIII 93290 . C T 345 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=0;QD=11.90;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:48:378,48,0 chrVIII 93302 . G A 305 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=12.20;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:338,42,0 chrVIII 93305 . G A 312 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;QD=12.48;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:345,42,0 chrVIII 93312 . T C 277 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;QD=11.08;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:39:310,39,0 chrVIII 93318 . C T 225 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=11.25;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:33:258,33,0 chrVIII 93321 . T C 196 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=10.32;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:229,30,0 chrVIII 93323 . C T 208 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=10.95;SB=-5.502e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:241,30,0 chrVIII 93324 . C T 208 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=0;QD=10.95;SB=-5.502e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:241,30,0 chrVIII 93332 . A G 124.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;MQRankSum=-1.735;QD=6.89;ReadPosRankSum=1.542;SB=-7.507e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:21:157,21,0 chrVIII 93335 . T C 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=3.63;SB=-7.552e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:87,12,0 chrVIII 93339 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;MQRankSum=-1.240;QD=2.36;ReadPosRankSum=1.488;SB=-7.697e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:9:65,9,0 chrVIII 93340 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=2.54;SB=-7.697e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:65,9,0 chrVIII 93341 . C A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=2.54;SB=-7.797e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:65,9,0 chrVIII 93346 . G T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;QD=2.54;SB=-7.591e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:65,9,0 chrVIII 93350 . G A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=1.20;SB=-7.664e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:6:43,6,0 chrVIII 93446 . T A 44.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.73;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:77,9,0 chrVIII 93450 . A G 45.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.77;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:78,9,0 chrVIII 93466 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.25;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:77,9,0 chrVIII 93467 . A G 42.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=2.15;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:75,9,0 chrVIII 93486 . C A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=1.36;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,16:16:6:53,6,0 chrVIII 93500 . A G 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=1.68;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,13:13:6:53,6,0 chrVIII 93506 . G C 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=3.28;SB=-2.798e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:78,9,0 chrVIII 93509 . G A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=3.21;SB=-2.698e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:77,9,0 chrVIII 93512 . G C 39.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=2.86;SB=-2.398e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:72,9,0 chrVIII 93518 . G A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=4.00;SB=-4.797e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:80,9,0 chrVIII 93546 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.47;SB=-6.980e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:52,6,0 chrVIII 93547 . T C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.14;SB=-6.880e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrVIII 93555 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.30;SB=-4.680e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:51,6,0 chrVIII 93557 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.14;SB=-6.680e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:50,6,0 chrVIII 93558 . C T 25.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=4.30;SB=-7.480e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:57,6,0 chrVIII 93563 . T C 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=3.96;SB=-7.180e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:55,6,0 chrVIII 93566 . A T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=4.16;SB=-5.480e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:52,6,0 chrVIII 93569 . A C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.20;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrVIII 93571 . G A 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.70;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:54,6,0 chrVIII 93574 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.20;SB=-2.880e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrVIII 93578 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=5.20;SB=-2.580e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:52,6,0 chrVIII 93580 . G C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=4.71;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:50,6,0 chrVIII 93581 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=4.71;SB=-2.580e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:50,6,0 chrVIII 93585 . T C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.47;SB=-2.951e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:52,6,0 chrVIII 93655 . G A 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=18.67;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:30:257,30,0 chrVIII 93659 . T A 220 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=13.75;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:253,30,0 chrVIII 93665 . C T 283 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=14.89;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:316,36,0 chrVIII 93743 . A G 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.508;QD=20.44;ReadPosRankSum=2.388;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1668,192,0 chrVIII 93752 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=21.29;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1481,171,0 chrVIII 93770 . A T 1391 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=22.08;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1424,162,0 chrVIII 93950 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.45;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:53,6,0 chrVIII 93961 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:55,6,0 chrVIII 93962 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.19;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:56,6,0 chrVIII 93968 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.00;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:80,9,0 chrVIII 93971 . T G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:101,12,0 chrVIII 93974 . G A 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.56;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:109,12,0 chrVIII 93977 . T C 74.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.28;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:107,12,0 chrVIII 93980 . A G 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=7.75;SB=-5.053e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:110,12,0 chrVIII 93983 . A G 43.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.40;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:76,9,0 chrVIII 93995 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.80;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:80,9,0 chrVIII 93997 . A C 75.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=7.55;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:108,12,0 chrVIII 94007 . T C 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=9.01;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:159,18,0 chrVIII 94010 . T C 124.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=8.87;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:157,18,0 chrVIII 94012 . A G 129.13 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=9.22;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:162,18,0 chrVIII 94022 . G T 146.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=8.59;SB=-6.907e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:179,21,0 chrVIII 94024 . C T 150.06 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=8.83;SB=-6.607e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:21:183,21,0 chrVIII 94034 . T G 178.03 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=8.48;SB=-9.704e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:24:211,24,0 chrVIII 94038 . A G 183.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;MQRankSum=0.908;QD=8.72;ReadPosRankSum=1.569;SB=-9.704e+01 GT:AD:DP:GQ:PL 1/1:1,20:21:24:216,24,0 chrVIII 94040 . T C 176.03 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=8.80;SB=-9.504e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:24:209,24,0 chrVIII 94052 . G T 270 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=9.64;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:36:303,36,0 chrVIII 94059 . C T 262 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.73;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:295,33,0 chrVIII 94060 . G T 263 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.77;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:296,33,0 chrVIII 94067 . T C 246 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=8.79;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:279,33,0 chrVIII 94068 . A T 255 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=9.11;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:288,33,0 chrVIII 94070 . T C 250 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=4.210;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;MQRankSum=1.255;QD=8.62;ReadPosRankSum=1.614;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:33:283,33,0 chrVIII 94081 . T C 304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.833;DP=42;Dels=0.00;FS=9.361;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;MQRankSum=1.612;QD=7.24;ReadPosRankSum=2.833;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:3,39:42:39:337,39,0 chrVIII 94090 . T C 470 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=9.40;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:503,60,0 chrVIII 94097 . A T 457 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=9.93;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:57:490,57,0 chrVIII 94099 . A T 442 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=9.61;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:57:475,57,0 chrVIII 94115 . A G 387 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=7.74;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:51:420,51,0 chrVIII 94124 . A G 346 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=0;MQRankSum=-0.452;QD=7.52;ReadPosRankSum=1.657;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:45:379,45,0 chrVIII 94130 . T G 360 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=7.83;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:48:393,48,0 chrVIII 94133 . G A 327 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=8.17;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:360,42,0 chrVIII 94145 . A G 233 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=6.85;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:266,33,0 chrVIII 94148 . T C 239 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=7.03;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:272,33,0 chrVIII 94150 . A G 235 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.36;MQ0=0;QD=6.91;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:268,33,0 chrVIII 94162 . C A 221 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=7.62;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:254,30,0 chrVIII 94166 . C T 193.01 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=7.42;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:226,27,0 chrVIII 94171 . T C 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.82;SB=-1.516e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:6:53,6,0 chrVIII 94172 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.98;SB=-1.556e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:6:55,6,0 chrVIII 94175 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=1.68;SB=-1.486e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:6:53,6,0 chrVIII 94382 . A G 85.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=0;QD=14.21;SB=-5.276e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:118,15,0 chrVIII 94390 . C T 129.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=0;QD=16.13;SB=-5.294e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:162,21,0 chrVIII 94414 . G A 638 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=19.94;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:78:671,78,0 chrVIII 94442 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=20.11;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:938,108,0 chrVIII 94466 . T C 789 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=19.72;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:822,96,0 chrVIII 94499 . G A 293 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=15.42;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:326,36,0 chrVIII 94741 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.57;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,42:42:6:55,6,0 chrVIII 95639 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.43;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1636,186,0 chrVIII 96126 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.86;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1390,165,0 chrVIII 96393 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1446,162,0 chrVIII 96485 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.5564;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.93;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1339,150,0 chrVIII 97160 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.62;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2065,222,0 chrVIII 97195 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.66;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:92:99:1750,201,0 chrVIII 97245 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.15;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2204,246,0 chrVIII 97536 . T C 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.023;DP=112;Dels=0.00;FS=15.392;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.528;QD=17.61;ReadPosRankSum=4.075;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:6,105:112:99:2005,237,0 chrVIII 97650 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=121;Dels=0.00;FS=2.969;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-2.306;QD=18.78;ReadPosRankSum=2.368;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,118:121:99:2305,264,0 chrVIII 97668 . A G 2011 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.79;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2044,231,0 chrVIII 98284 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=12.09;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:53:75:674,75,0 chrVIII 98484 . A T 2156 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.53;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2189,249,0 chrVIII 98546 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.82;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1790,204,0 chrVIII 98622 . C G 885 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=15.80;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:918,108,0 chrVIII 98643 . C A 638 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=12.76;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:671,75,0 chrVIII 99089 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.87;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1467,165,0 chrVIII 99112 . A G 1627 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=16.95;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1660,195,0 chrVIII 99116 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.856;QD=18.03;ReadPosRankSum=1.653;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1602,183,0 chrVIII 101246 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.65;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1995,222,0 chrVIII 101494 . G A 2379 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.88;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,120:126:99:2412,276,0 chrVIII 101857 . G A 2552 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.19;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2585,288,0 chrVIII 102030 . A G 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=3.053;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.088;QD=21.89;ReadPosRankSum=2.299;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2178,246,0 chrVIII 102389 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1633,189,0 chrVIII 102818 . G C 1333 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.51;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1366,159,0 chrVIII 103247 . A T 1534 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.26;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1567,180,0 chrVIII 104426 . A C 744 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=14.59;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:777,90,0 chrVIII 104429 . G A 826 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=15.30;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:96:859,96,0 chrVIII 104536 . G C 1037 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.46;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1070,123,0 chrVIII 104568 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.44;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1062,120,0 chrVIII 104758 . A G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=88;Dels=0.00;FS=16.812;HaplotypeScore=5.9436;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.841;QD=18.74;ReadPosRankSum=3.334;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:4,83:88:99:1682,201,0 chrVIII 105227 . C A 1512 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.91;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1545,174,0 chrVIII 105292 . T G 408 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.74;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:441,51,0 chrVIII 105318 . A G 257 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=15.12;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:290,33,0 chrVIII 105464 . G A 1133 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1166,126,0 chrVIII 105532 . C T 857 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:890,102,0 chrVIII 105578 . T G 605 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:72:638,72,0 chrVIII 105621 . C T 229 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.27;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,14:15:30:262,30,0 chrVIII 105670 . T A 116.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.751;QD=12.90;ReadPosRankSum=0.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,8:9:18:149,18,0 chrVIII 105694 . G A 885 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:99:918,102,0 chrVIII 105787 . A G 742 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:90:775,90,0 chrVIII 105848 . G C 708 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:87:741,87,0 chrVIII 105958 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.866;QD=21.39;ReadPosRankSum=1.654;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:974,111,0 chrVIII 106126 . A G 1413 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.19;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1446,171,0 chrVIII 106261 . T A 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.370;QD=20.67;ReadPosRankSum=1.652;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1873,213,0 chrVIII 106528 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1982,228,0 chrVIII 106822 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.08;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1451,162,0 chrVIII 106947 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1178,129,0 chrVIII 107008 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.44;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1604,174,0 chrVIII 107309 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.35;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:883,99,0 chrVIII 107541 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.57;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1596,183,0 chrVIII 107597 . C A 2257 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.51;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2290,249,0 chrVIII 107728 . A T 1952 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.95;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1985,219,0 chrVIII 107756 . C T 2387 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.31;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2420,264,0 chrVIII 107831 . G A 2754 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8658;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.95;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2787,315,0 chrVIII 107866 . G A 2972 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:3005,333,0 chrVIII 107993 . T A 1631 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.34;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1664,183,0 chrVIII 108568 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.48;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:66:575,66,0 chrVIII 108697 . A G 880 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.78;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:99:913,105,0 chrVIII 109025 . A G 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.213;QD=21.76;ReadPosRankSum=1.689;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1774,210,0 chrVIII 110021 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1400,156,0 chrVIII 110256 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.75;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1252,141,0 chrVIII 110305 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2081,231,0 chrVIII 110439 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.74;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2086,246,0 chrVIII 110685 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.26;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1950,222,0 chrVIII 111246 . T C 903 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.07;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:936,108,0 chrVIII 111464 . G C 912 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.71;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:945,111,0 chrVIII 111477 . G T 859 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.95;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:99:892,99,0 chrVIII 111623 . G T 2287 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1242;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2320,258,0 chrVIII 111691 . C T 1545 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1578,174,0 chrVIII 111695 . G A 1280 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1313,156,0 chrVIII 111971 . C T 2401 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.70;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2434,270,0 chrVIII 112492 . A T 1366 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.24;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1399,159,0 chrVIII 112829 . A T 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.077;QD=22.37;ReadPosRankSum=1.694;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2046,225,0 chrVIII 112944 . T C 1285 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.91;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1318,153,0 chrVIII 112966 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.18;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1373,150,0 chrVIII 113512 . A C 1091 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.27;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1124,132,0 chrVIII 114144 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2468,282,0 chrVIII 114337 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2178,240,0 chrVIII 114567 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.25;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2483,282,0 chrVIII 115246 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.702;QD=21.16;ReadPosRankSum=0.708;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2509,263,0 chrVIII 115401 . T C 89.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=51.86;MQ0=0;MQRankSum=0.424;QD=0.75;ReadPosRankSum=2.408;SB=-1.425e+03 GT:AD:DP:GQ:PL 0/1:2,117:120:5:119,0,5 chrVIII 115422 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.78;SB=-1.857e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2483,276,0 chrVIII 115445 . C T 2738 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.40;SB=-1.961e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:2771,315,0 chrVIII 115476 . G A 3301.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.44;SB=-2.200e+03 GT:AD:DP:GQ:PL 1/1:0,177:179:99:3301,363,0 chrVIII 115917 . A T 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=0.042;QD=22.89;ReadPosRankSum=1.690;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1910,210,0 chrVIII 115977 . A T 1619 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=20.49;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1652,186,0 chrVIII 116184 . A T 1284 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=17.59;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1317,147,0 chrVIII 116194 . G A 895 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=15.43;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:928,105,0 chrVIII 116195 . A G 871 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;MQRankSum=-1.732;QD=16.13;ReadPosRankSum=1.668;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:904,105,0 chrVIII 116198 . C A 922 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=15.90;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:955,105,0 chrVIII 116213 . G A 646 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=14.68;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:75:679,75,0 chrVIII 116227 . T G 344 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=11.86;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:45:377,45,0 chrVIII 116228 . G T 375 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;MQRankSum=-0.657;QD=12.93;ReadPosRankSum=1.614;SB=-6.788e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:45:408,45,0 chrVIII 116234 . A G 378 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-0.168;QD=12.19;ReadPosRankSum=1.621;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:48:411,48,0 chrVIII 116306 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=18.37;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1080,129,0 chrVIII 116310 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=20.51;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1202,135,0 chrVIII 116318 . T C 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=6.092;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;MQRankSum=1.562;QD=18.39;ReadPosRankSum=1.675;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1155,132,0 chrVIII 116330 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=17.00;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1070,123,0 chrVIII 116384 . T C 518 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=15.70;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:63:551,63,0 chrVIII 116388 . C G 536 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=16.24;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:569,66,0 chrVIII 116442 . G A 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=19;Dels=0.00;FS=39.329;HaplotypeScore=12.4302;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=1;MQRankSum=1.676;QD=7.16;ReadPosRankSum=-0.296;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:6,13:19:27:166,0,27 chrVIII 116445 . A T 130.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=19;Dels=0.00;FS=39.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=1;MQRankSum=2.267;QD=6.84;ReadPosRankSum=-1.479;SB=-3.021e+00 GT:AD:DP:GQ:PL 0/1:6,13:19:26:160,0,26 chrVIII 116452 . G A 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;DP=17;Dels=0.00;FS=36.403;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.84;MQ0=1;MQRankSum=1.133;QD=4.71;ReadPosRankSum=-2.606;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:6,11:17:32:110,0,32 chrVIII 116463 . T G 128.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.896;DP=18;Dels=0.00;FS=20.434;HaplotypeScore=26.4942;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=1;MQRankSum=0.264;QD=7.14;ReadPosRankSum=-1.318;SB=-4.753e+01 GT:AD:DP:GQ:PL 1/1:6,12:18:2:158,2,0 chrVIII 116466 . G A 105.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=21;Dels=0.00;FS=21.070;HaplotypeScore=15.7640;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=1;MQRankSum=1.733;QD=5.00;ReadPosRankSum=-0.844;SB=-4.047e+01 GT:AD:DP:GQ:PL 0/1:9,10:21:51:135,0,51 chrVIII 116474 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=19;Dels=0.00;FS=27.868;HaplotypeScore=6.0497;MLEAC=1;MLEAF=0.500;MQ=22.63;MQ0=1;MQRankSum=1.752;QD=1.37;ReadPosRankSum=-1.646;SB=0.101 GT:AD:DP:GQ:PL 0/1:15,4:19:56:56,0,103 chrVIII 116476 . A C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DP=19;Dels=0.00;FS=19.117;HaplotypeScore=6.0497;MLEAC=1;MLEAF=0.500;MQ=22.63;MQ0=1;MQRankSum=1.659;QD=1.42;ReadPosRankSum=-1.659;SB=0.079 GT:AD:DP:GQ:PL 0/1:16,3:19:57:57,0,105 chrVIII 116478 . A T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;DP=19;Dels=0.00;FS=17.298;HaplotypeScore=1.4679;MLEAC=1;MLEAF=0.500;MQ=21.69;MQ0=1;MQRankSum=0.584;QD=1.32;ReadPosRankSum=-2.814;SB=0.079 GT:AD:DP:GQ:PL 0/1:15,4:19:55:55,0,106 chrVIII 116508 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;DP=16;Dels=0.00;FS=2.963;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=1;MQRankSum=0.919;QD=0.65;ReadPosRankSum=-0.919;SB=-1.249e+00 GT:AD:DP:GQ:PL 0/1:10,6:16:40:40,0,64 chrVIII 116573 . T C 14.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=13;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.74;MQ0=6;MQRankSum=1.495;QD=1.09;ReadPosRankSum=-0.198;SB=0.013 GT:AD:DP:GQ:PL 0/1:11,2:13:18:44,0,18 chrVIII 116801 . A T 614 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=16.16;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:647,75,0 chrVIII 116923 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=15.77;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1326,147,0 chrVIII 116958 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=18.29;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1533,168,0 chrVIII 116975 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=14.60;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1405,153,0 chrVIII 116997 . T C 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=17.84;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,129,0 chrVIII 117141 . C T 1207 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.12;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1240,135,0 chrVIII 117152 . A G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=0.495;QD=16.16;ReadPosRankSum=1.609;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:938,108,0 chrVIII 117170 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=17.14;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1250,147,0 chrVIII 117292 . C A 2177 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=23.41;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2210,249,0 chrVIII 117334 . C T 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.351;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=16.2152;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=1.073;QD=17.99;ReadPosRankSum=3.695;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:7,77:84:99:1544,171,0 chrVIII 117335 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=83;Dels=0.00;FS=2.133;HaplotypeScore=17.1984;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-0.481;QD=16.92;ReadPosRankSum=2.963;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:7,75:83:99:1437,165,0 chrVIII 117358 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.39;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1827,201,0 chrVIII 117417 . T A 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=1.048;QD=19.09;ReadPosRankSum=1.687;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1484,165,0 chrVIII 117504 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=17.88;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1356,156,0 chrVIII 117534 . A T 1253 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=16.06;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1286,147,0 chrVIII 117556 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7272;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=14.14;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1150,132,0 chrVIII 117572 . C T 1245 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=13.99;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1278,141,0 chrVIII 117586 . A G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=-1.175;QD=13.62;ReadPosRankSum=1.692;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1218,141,0 chrVIII 117605 . G C 852 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=11.21;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:885,102,0 chrVIII 117608 . A G 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;MQRankSum=-0.796;QD=10.40;ReadPosRankSum=1.685;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:93:813,93,0 chrVIII 117780 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.79;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2107,234,0 chrVIII 117888 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.34;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2103,243,0 chrVIII 118068 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=2.727;HaplotypeScore=7.3795;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.527;QD=20.47;ReadPosRankSum=2.403;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2182,255,0 chrVIII 118187 . T C 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.567;QD=19.52;ReadPosRankSum=1.609;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2297,270,0 chrVIII 118305 . C T 2317 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=9.0847;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.87;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2350,258,0 chrVIII 118687 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.80;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1954,225,0 chrVIII 119053 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1625,177,0 chrVIII 119178 . C A 862 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.74;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:895,102,0 chrVIII 119193 . A C 848 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=15.70;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:881,102,0 chrVIII 119502 . C T 148.06 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=7.05;SB=-8.007e+01 GT:AD:DP:GQ:PL 1/1:0,17:21:21:181,21,0 chrVIII 119759 . C T 270 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=15.88;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:303,33,0 chrVIII 119938 . T C 764 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:93:797,93,0 chrVIII 119946 . A G 773 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:96:806,96,0 chrVIII 120226 . A G 2096 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.61;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2129,243,0 chrVIII 120247 . C T 2410 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3875;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.91;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2443,270,0 chrVIII 120385 . T G 2217 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.8703;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.95;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2250,267,0 chrVIII 120445 . A G 2884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=3.624;HaplotypeScore=7.1793;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.517;QD=22.36;ReadPosRankSum=1.652;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2917,330,0 chrVIII 121030 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=111;Dels=0.00;FS=13.393;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=2.459;QD=19.03;ReadPosRankSum=2.918;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,107:111:99:2145,243,0 chrVIII 121477 . A T 1256 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.32;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1289,144,0 chrVIII 122655 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.03;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1079,117,0 chrVIII 123099 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.4201;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.098;QD=20.02;ReadPosRankSum=1.667;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1094,126,0 chrVIII 123473 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.688;QD=18.73;ReadPosRankSum=1.510;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1494,171,0 chrVIII 123639 . G T 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=254.7692;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=1.137;QD=18.18;ReadPosRankSum=-0.017;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:1869,204,0 chrVIII 123678 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.01;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1186,138,0 chrVIII 123915 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=13.58;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1038,120,0 chrVIII 123980 . A G 504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.444;QD=8.13;ReadPosRankSum=3.309;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:4,58:62:63:537,63,0 chrVIII 124092 . T A 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.223;QD=21.71;ReadPosRankSum=2.381;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1596,183,0 chrVIII 124457 . T C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.055;QD=17.81;ReadPosRankSum=1.653;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1600,183,0 chrVIII 124744 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.16;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2361,255,0 chrVIII 124904 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.84;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1672,186,0 chrVIII 125040 . A G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.148;QD=19.69;ReadPosRankSum=1.699;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2100,243,0 chrVIII 125084 . T C 2144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=4.612;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.376;QD=19.85;ReadPosRankSum=1.667;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2177,246,0 chrVIII 125108 . G A 2151 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.30;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2184,243,0 chrVIII 125140 . T C 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=99;Dels=0.00;FS=9.363;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.603;QD=18.04;ReadPosRankSum=2.373;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:2,94:99:99:1819,216,0 chrVIII 125249 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.11;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1581,177,0 chrVIII 125273 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1381;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.32;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1590,189,0 chrVIII 125354 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.15;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2209,246,0 chrVIII 125441 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=23.23;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2170,240,0 chrVIII 125531 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0979;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.38;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1128,126,0 chrVIII 125771 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=13.5712;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.64;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1697,192,0 chrVIII 125820 . G T 623 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=40.5905;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=9.89;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:75:656,75,0 chrVIII 125900 . T G 1187 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.47;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1220,144,0 chrVIII 125937 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.47;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1471,168,0 chrVIII 125980 . C T 851 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:884,99,0 chrVIII 126148 . C A 564 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=47.3365;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=11.51;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:597,66,0 chrVIII 126255 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.50;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1293,147,0 chrVIII 126397 . T G 924 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.48;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:957,108,0 chrVIII 126572 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.07;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1094,126,0 chrVIII 126792 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.71;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1782,198,0 chrVIII 126983 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.57;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1025,114,0 chrVIII 128559 . G C 1542 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.52;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1575,186,0 chrVIII 128904 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1415,159,0 chrVIII 129265 . C T 2257 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.35;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2290,255,0 chrVIII 129445 . A G 2434 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.54;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2467,285,0 chrVIII 129863 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6432;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.33;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1730,198,0 chrVIII 130043 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.64;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2297,252,0 chrVIII 130265 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.53;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1289,147,0 chrVIII 130533 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.83;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1363,153,0 chrVIII 130538 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=14.36;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1182,135,0 chrVIII 130619 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.82;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1844,210,0 chrVIII 130652 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.65;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1938,222,0 chrVIII 131216 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.35;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1490,162,0 chrVIII 131324 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4617;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.64;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2362,279,0 chrVIII 132165 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.84;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1243,141,0 chrVIII 132728 . A C 1002 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.04;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1035,120,0 chrVIII 133140 . G A 158.06 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=6.59;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,23:24:21:191,21,0 chrVIII 133235 . T C 1006 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1039,123,0 chrVIII 133474 . C T 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=18.69;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1136,126,0 chrVIII 133475 . A C 1044 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=18.00;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1077,123,0 chrVIII 133476 . G C 1043 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=17.98;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1076,126,0 chrVIII 133485 . C A 941 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=17.75;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:974,111,0 chrVIII 133487 . C G 962 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=17.81;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:995,114,0 chrVIII 133579 . A T 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.323;DP=128;Dels=0.00;FS=4.048;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.214;QD=20.51;ReadPosRankSum=1.050;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2658,300,0 chrVIII 133652 . T C 2485 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.59;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2518,291,0 chrVIII 133760 . A C 2157 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=1;QD=20.74;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2190,255,0 chrVIII 133918 . G A 2503 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=20.52;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2536,282,0 chrVIII 134113 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=17.29;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1053,117,0 chrVIII 134140 . T C 832 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=16.64;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:865,102,0 chrVIII 134172 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=0;QD=19.59;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1287,141,0 chrVIII 134180 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=20.53;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1244,135,0 chrVIII 134208 . G A 1344 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1377,156,0 chrVIII 134209 . A G 1301 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.67;MQ0=0;QD=18.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1334,156,0 chrVIII 134215 . C G 1307 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.272;DP=119;Dels=0.00;FS=340.298;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.79;MQ0=0;MQRankSum=-1.101;QD=10.98;ReadPosRankSum=-8.918;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:50,69:119:99:1340,134,0 chrVIII 134240 . A T 80.51 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=1.64;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:12:113,12,0 chrVIII 134491 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=22.75;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1694,195,0 chrVIII 134524 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=22.90;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2254,249,0 chrVIII 134880 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.96;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1617,180,0 chrVIII 135273 . G A 1057 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1090,120,0 chrVIII 135753 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.03;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1575,174,0 chrVIII 136090 . A G 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.938;QD=20.54;ReadPosRankSum=1.660;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1019,120,0 chrVIII 136284 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.63;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1459,162,0 chrVIII 136467 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.00;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1045,120,0 chrVIII 136639 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.53;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1068,120,0 chrVIII 136744 . G A 573 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.08;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:606,69,0 chrVIII 137190 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.42;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2218,252,0 chrVIII 137997 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.21;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:1051,120,0 chrVIII 138304 . C A 1507 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.09;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1540,174,0 chrVIII 138310 . C G 1462 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.51;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1495,177,0 chrVIII 138587 . T C 1248 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.69;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1281,144,0 chrVIII 139207 . G C 1128 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1161,135,0 chrVIII 139248 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.55;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1382,153,0 chrVIII 139344 . T A 1333 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.20;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1366,153,0 chrVIII 139383 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.78;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1550,177,0 chrVIII 139404 . C T 1210 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.62;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1243,138,0 chrVIII 139405 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.48;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1234,135,0 chrVIII 139506 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1859,207,0 chrVIII 139587 . C G 1462 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.51;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1495,177,0 chrVIII 139667 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.37;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1636,189,0 chrVIII 139958 . A T 2078 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.39;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2111,240,0 chrVIII 139974 . G A 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.087;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.475;QD=17.79;ReadPosRankSum=-1.664;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1848,185,0 chrVIII 139990 . T G 1392 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=14.81;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1425,165,0 chrVIII 140003 . G T 1530 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=15.30;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1563,168,0 chrVIII 140065 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.72;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1856,210,0 chrVIII 140953 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.32;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2293,267,0 chrVIII 141325 . C G 2053 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2086,240,0 chrVIII 141479 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.65;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1898,213,0 chrVIII 141734 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.97;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1483,162,0 chrVIII 141841 . G A 2606 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.0717;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.19;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2639,294,0 chrVIII 141876 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.25;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2540,288,0 chrVIII 141885 . A G 2479 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.01;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2512,291,0 chrVIII 142299 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=15.00;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1713,198,0 chrVIII 142302 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=14.76;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1745,201,0 chrVIII 142800 . G C 2157 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2190,252,0 chrVIII 142863 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.76;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1871,216,0 chrVIII 143214 . A T 2397 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.3422;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.99;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2430,273,0 chrVIII 143727 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.34;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1655,189,0 chrVIII 143824 . A G 1590 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6024;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.07;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1623,189,0 chrVIII 143930 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.30;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2174,243,0 chrVIII 144241 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.38;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:84:752,84,0 chrVIII 144253 . T C 876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.832;DP=67;Dels=0.00;FS=15.339;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.636;QD=13.07;ReadPosRankSum=3.898;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:6,61:67:99:909,105,0 chrVIII 144280 . G T 1438 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.72;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1471,165,0 chrVIII 144393 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.90;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2039,234,0 chrVIII 144688 . T C 2296 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.50;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2329,261,0 chrVIII 144730 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1893,216,0 chrVIII 144796 . C G 2023 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7518;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.64;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2056,234,0 chrVIII 145045 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.66;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1562,180,0 chrVIII 145105 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=14.6915;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.71;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1511,168,0 chrVIII 145315 . G C 1691 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.96;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1724,201,0 chrVIII 145363 . C T 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.762;QD=20.20;ReadPosRankSum=-0.393;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1548,154,0 chrVIII 145441 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.87;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1722,198,0 chrVIII 145684 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.65;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1912,213,0 chrVIII 145714 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.21;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1690,186,0 chrVIII 145768 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.510;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.188;QD=21.01;ReadPosRankSum=1.694;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1987,228,0 chrVIII 145861 . G C 1958 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1991,231,0 chrVIII 145897 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.39;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1483,174,0 chrVIII 146330 . G A 490 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=16.33;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:60:523,60,0 chrVIII 146331 . T G 473 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=15.77;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:60:506,60,0 chrVIII 146697 . G A 622 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=9.57;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:75:655,75,0 chrVIII 146707 . A T 737 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=10.10;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:90:770,90,0 chrVIII 146719 . A T 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.736;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;MQRankSum=-0.489;QD=10.59;ReadPosRankSum=1.688;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:96:859,96,0 chrVIII 146822 . C A 1149 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=15.12;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1182,135,0 chrVIII 146826 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=18.48;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1253,141,0 chrVIII 146840 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=18.19;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1288,147,0 chrVIII 146915 . G T 2194 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=22.62;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2227,249,0 chrVIII 146927 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=22.31;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2219,243,0 chrVIII 147004 . C G 1798 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=22.20;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1831,207,0 chrVIII 147053 . T C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.044;QD=22.06;ReadPosRankSum=1.688;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1754,204,0 chrVIII 147161 . C A 1590 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.78;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1623,186,0 chrVIII 147327 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.54;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1984,228,0 chrVIII 147502 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.95;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1265,138,0 chrVIII 147504 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.89;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1223,141,0 chrVIII 147558 . A G 795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.208;QD=15.59;ReadPosRankSum=1.663;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:96:828,96,0 chrVIII 147573 . A C 825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.035;QD=16.50;ReadPosRankSum=1.662;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:96:858,96,0 chrVIII 147628 . T A 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.638;QD=16.00;ReadPosRankSum=-0.638;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,56:61:99:1009,114,0 chrVIII 147667 . G C 1006 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1039,117,0 chrVIII 147715 . T C 937 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.11;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:62:99:970,111,0 chrVIII 147745 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=11.73;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:819,96,0 chrVIII 147843 . T C 866 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=24.74;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:99:899,105,0 chrVIII 148168 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=21.20;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1284,147,0 chrVIII 148297 . T A 540 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;QD=6.75;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:66:573,66,0 chrVIII 148315 . T C 675 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=7.58;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:84:708,84,0 chrVIII 148334 . T A 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4769;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=-0.231;QD=9.93;ReadPosRankSum=1.655;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:937,108,0 chrVIII 148409 . T G 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;MQRankSum=1.477;QD=17.51;ReadPosRankSum=1.295;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1714,201,0 chrVIII 148418 . C T 1448 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=16.27;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1481,168,0 chrVIII 148426 . A G 1170 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=13.60;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1203,144,0 chrVIII 148427 . A G 1388 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.60;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1421,162,0 chrVIII 148542 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.03;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1187,138,0 chrVIII 148745 . C A 1958 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.6668;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.19;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1991,225,0 chrVIII 148762 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8687;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.92;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:88:99:1522,174,0 chrVIII 148923 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.38;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1154,126,0 chrVIII 148943 . T G 990 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.68;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1023,120,0 chrVIII 149018 . T C 665 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=15.11;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:81:698,81,0 chrVIII 149077 . C T 445 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=17.12;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,24:26:54:478,54,0 chrVIII 149249 . A T 890 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=30.6587;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=16.18;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:923,105,0 chrVIII 149250 . T A 776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=55;Dels=0.04;FS=2.540;HaplotypeScore=40.1141;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;MQRankSum=-0.212;QD=14.11;ReadPosRankSum=2.868;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:3,50:53:93:809,93,0 chrVIII 149305 . G T 1022 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.58;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1055,120,0 chrVIII 149347 . C A 1185 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.16;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1218,138,0 chrVIII 149376 . C A 613 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=16.13;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:646,72,0 chrVIII 149385 . C T 626 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=14.90;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:659,72,0 chrVIII 149390 . C G 694 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=14.46;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:727,84,0 chrVIII 149430 . G A 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;DP=58;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.804;QD=15.55;ReadPosRankSum=0.062;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:935,105,0 chrVIII 149511 . A G 840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=2.617;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=-0.985;QD=13.12;ReadPosRankSum=2.890;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:873,102,0 chrVIII 149519 . T C 833 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=3.906;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.675;QD=14.12;ReadPosRankSum=1.674;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:866,99,0 chrVIII 149577 . A G 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.077;DP=54;Dels=0.00;FS=3.080;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.210;QD=15.78;ReadPosRankSum=2.357;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:885,102,0 chrVIII 149608 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.57;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1228,141,0 chrVIII 149614 . T C 1291 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.21;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1324,150,0 chrVIII 149917 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=9.112;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.733;QD=23.44;ReadPosRankSum=2.356;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1885,213,0 chrVIII 150639 . C T 694 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=14.46;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:727,84,0 chrVIII 150651 . G A 642 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=14.27;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:675,75,0 chrVIII 150924 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.05;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1296,150,0 chrVIII 151118 . C G 1487 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.83;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1520,174,0 chrVIII 151416 . T C 860 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=21.50;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:893,105,0 chrVIII 151806 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.60;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1331,147,0 chrVIII 152094 . A C 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.380;QD=20.59;ReadPosRankSum=1.674;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1248,144,0 chrVIII 152121 . G A 904 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.73;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:937,108,0 chrVIII 152397 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.55;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:928,102,0 chrVIII 152677 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.24;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1172,129,0 chrVIII 152724 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.51;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1181,135,0 chrVIII 152946 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.29;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1017,114,0 chrVIII 153195 . A G 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.051;QD=23.00;ReadPosRankSum=1.619;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1436,165,0 chrVIII 153651 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.30;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1460,162,0 chrVIII 153731 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.501;QD=17.87;ReadPosRankSum=1.559;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1105,129,0 chrVIII 154126 . T A 1408 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.71;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1441,159,0 chrVIII 154229 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:645,72,0 chrVIII 154608 . A G 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:901,102,0 chrVIII 154746 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.70;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1118,126,0 chrVIII 155146 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.94;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1130,129,0 chrVIII 155186 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:966,108,0 chrVIII 155587 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.82;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1448,159,0 chrVIII 156924 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1489,165,0 chrVIII 157305 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.84;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:693,78,0 chrVIII 158089 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=16.25;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1885,216,0 chrVIII 158092 . G T 1621 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=14.35;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1654,198,0 chrVIII 158374 . A G 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9563;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.905;QD=14.02;ReadPosRankSum=2.364;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1239,141,0 chrVIII 159406 . G T 2186 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.31;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2219,246,0 chrVIII 159887 . A C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0229;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.397;QD=20.16;ReadPosRankSum=1.700;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2230,261,0 chrVIII 159962 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.9906;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.84;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1759,195,0 chrVIII 160385 . T G 1822 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.47;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1855,219,0 chrVIII 160870 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.15;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1683,195,0 chrVIII 161492 . A G 708 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:87:741,87,0 chrVIII 161715 . C T 1528 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1561,177,0 chrVIII 161791 . G T 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.272;QD=1.53;ReadPosRankSum=-2.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,9:30:76:76,0,229 chrVIII 161995 . G C 2124 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.62;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2157,246,0 chrVIII 162108 . A G 2658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.009;DP=131;Dels=0.00;FS=7.052;HaplotypeScore=14.3544;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.861;QD=20.29;ReadPosRankSum=1.277;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,128:131:99:2691,302,0 chrVIII 164274 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.13;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1139,132,0 chrVIII 164870 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.30;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1953,219,0 chrVIII 164881 . C A 1947 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=16.09;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1980,216,0 chrVIII 165142 . G A 1350 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.55;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1383,153,0 chrVIII 165278 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.20;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1851,207,0 chrVIII 165566 . A G 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.449;QD=14.98;ReadPosRankSum=1.668;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:857,102,0 chrVIII 165647 . A G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542;DP=73;Dels=0.00;FS=4.162;HaplotypeScore=5.3243;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.637;QD=17.32;ReadPosRankSum=1.495;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1297,153,0 chrVIII 165698 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.21;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1569,186,0 chrVIII 165727 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.3416;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.04;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1458,162,0 chrVIII 165797 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.4863;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-1.320;QD=18.14;ReadPosRankSum=1.691;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1557,177,0 chrVIII 165835 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.81;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1331,153,0 chrVIII 165867 . T G 1368 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.37;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1401,159,0 chrVIII 165986 . A G 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=79;Dels=0.00;FS=6.541;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.016;QD=20.92;ReadPosRankSum=2.387;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1686,198,0 chrVIII 166031 . T A 1836 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.24;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1869,207,0 chrVIII 166195 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.99;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1951,222,0 chrVIII 166209 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=18.07;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1840,207,0 chrVIII 166541 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.6556;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.37;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2151,246,0 chrVIII 166604 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.79;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1814,213,0 chrVIII 166655 . C T 1356 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.86;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1389,159,0 chrVIII 166793 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.11;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1663,192,0 chrVIII 166940 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.72;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1216,138,0 chrVIII 167277 . T C 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=59;Dels=0.00;FS=4.624;HaplotypeScore=9.4222;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=1.075;QD=17.90;ReadPosRankSum=1.135;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1089,126,0 chrVIII 167543 . T C 831 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:96:864,96,0 chrVIII 167557 . T A 755 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=17.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:87:788,87,0 chrVIII 167569 . C T 678 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.32;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:75:711,75,0 chrVIII 167575 . G T 604 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.78;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:69:637,69,0 chrVIII 167593 . T C 571 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.84;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:604,69,0 chrVIII 168241 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.83;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:887,102,0 chrVIII 168310 . G A 906 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.47;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:939,108,0 chrVIII 168439 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.68;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1147,129,0 chrVIII 168444 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.33;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1073,120,0 chrVIII 168804 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.23;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1519,174,0 chrVIII 169673 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3673;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.20;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2111,237,0 chrVIII 169730 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.43;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1526,171,0 chrVIII 169760 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.07;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1388,159,0 chrVIII 169868 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.16;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:83:99:1623,186,0 chrVIII 170595 . C T 188.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.54;MQ0=0;QD=14.46;SB=-5.503e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:24:221,24,0 chrVIII 171171 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.08;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1461,171,0 chrVIII 171279 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.41;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1983,222,0 chrVIII 172296 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.08;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1353,156,0 chrVIII 172361 . G A 1167 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.44;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1200,135,0 chrVIII 172837 . C G 1185 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.95;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1218,141,0 chrVIII 173087 . C T 517 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;QD=12.02;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,42:43:63:550,63,0 chrVIII 173207 . A G 627 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.62;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:75:660,75,0 chrVIII 173271 . A G 673 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:81:706,81,0 chrVIII 173289 . G C 586 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=14.29;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:72:619,72,0 chrVIII 173295 . G A 727 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:84:760,84,0 chrVIII 174093 . T C 2616 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.9764;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.69;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2649,309,0 chrVIII 174717 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.58;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2579,300,0 chrVIII 175012 . C T 2839 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-1.651e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2872,312,0 chrVIII 175480 . C T 2166 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2199,243,0 chrVIII 175542 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.88;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2670,288,0 chrVIII 176243 . C A 1283 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=14.58;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1316,150,0 chrVIII 176426 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.010;QD=15.36;ReadPosRankSum=1.703;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:1876,216,0 chrVIII 176679 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=14.26;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:917,108,0 chrVIII 176780 . A G 562 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.13;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:595,69,0 chrVIII 177049 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1484,171,0 chrVIII 177619 . A C 1818 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.99;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1851,216,0 chrVIII 177867 . A G 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.060;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=17.3773;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.865;QD=13.13;ReadPosRankSum=2.401;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1359,156,0 chrVIII 178041 . G T 1366 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=14.23;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1399,153,0 chrVIII 178104 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=89.6070;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=21.15;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2190,243,0 chrVIII 178170 . A T 895 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=14.92;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:928,108,0 chrVIII 178171 . T G 870 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-0.058;QD=14.50;ReadPosRankSum=1.675;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:903,108,0 chrVIII 178172 . T C 987 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.45;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1020,123,0 chrVIII 178173 . T A 1009 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.82;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1042,123,0 chrVIII 178413 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.49;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1672,192,0 chrVIII 178619 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=16.86;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1382,150,0 chrVIII 178632 . A G 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.311;QD=15.65;ReadPosRankSum=1.688;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1254,147,0 chrVIII 178799 . T C 1000 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.00;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1033,120,0 chrVIII 178843 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.27;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1414,156,0 chrVIII 178909 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=16.46;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:889,99,0 chrVIII 179026 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.71;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1117,123,0 chrVIII 179613 . T C 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.731;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.876;QD=22.73;ReadPosRankSum=1.651;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1965,222,0 chrVIII 179748 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1564,177,0 chrVIII 179871 . T A 1241 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.25;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1274,147,0 chrVIII 180749 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.98;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2099,231,0 chrVIII 180818 . C T 2346 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.93;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2379,270,0 chrVIII 180903 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=17.15;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1662,186,0 chrVIII 180918 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=15.03;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1371,162,0 chrVIII 182092 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.644;QD=21.26;ReadPosRankSum=1.644;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1734,201,0 chrVIII 183041 . C G 1372 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.37;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1405,162,0 chrVIII 183337 . A G 1293 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.30;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1326,153,0 chrVIII 183721 . T C 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=6.398;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.722;QD=19.00;ReadPosRankSum=1.588;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:945,108,0 chrVIII 183741 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.31;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1205,135,0 chrVIII 183919 . T A 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.500;QD=18.17;ReadPosRankSum=1.655;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:869,99,0 chrVIII 184104 . C T 548 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=14.42;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:581,66,0 chrVIII 184122 . T A 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.578;QD=17.60;ReadPosRankSum=1.655;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:93:825,93,0 chrVIII 184258 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.76;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1121,129,0 chrVIII 184374 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.73;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1256,144,0 chrVIII 184453 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.10;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1094,123,0 chrVIII 185352 . T C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.896;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.564;QD=19.33;ReadPosRankSum=1.665;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2043,243,0 chrVIII 185403 . C T 2282 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.86;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2315,258,0 chrVIII 185625 . A G 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.092;QD=18.16;ReadPosRankSum=1.582;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1704,201,0 chrVIII 186003 . T A 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.904;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.208;QD=20.34;ReadPosRankSum=1.692;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1803,201,0 chrVIII 186699 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.94;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1662,186,0 chrVIII 186876 . C T 733 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:84:766,84,0 chrVIII 188673 . C A 2798 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.2056;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.99;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2831,315,0 chrVIII 188805 . A G 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.075;QD=21.64;ReadPosRankSum=1.682;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1526,177,0 chrVIII 188842 . C G 834 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=16.04;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:867,102,0 chrVIII 188846 . A G 826 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=15.30;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:859,99,0 chrVIII 188853 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=14.93;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:899,99,0 chrVIII 189054 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=14.31;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1721,201,0 chrVIII 189143 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.14;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1353,153,0 chrVIII 189221 . C G 1090 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.82;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1123,129,0 chrVIII 189310 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.27;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1518,171,0 chrVIII 190024 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.89;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2756,306,0 chrVIII 190671 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.05;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1334,150,0 chrVIII 191072 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1682,192,0 chrVIII 191248 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.16;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1035,123,0 chrVIII 191478 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.95;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1197,135,0 chrVIII 191691 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.47;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1896,213,0 chrVIII 192850 . C T 2002 filter AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.8436;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=5;QD=20.43;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2035,222,0 chrVIII 192892 . C T 1819 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=6;QD=17.32;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1852,213,0 chrVIII 192973 . G A 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;DP=122;Dels=0.00;FS=4.941;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=2;MQRankSum=2.566;QD=19.96;ReadPosRankSum=-0.694;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:5,117:122:99:2468,205,0 chrVIII 193003 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=1;QD=21.74;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2337,273,0 chrVIII 193114 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=107;Dels=0.00;FS=2.237;HaplotypeScore=8.5320;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=1;MQRankSum=-0.991;QD=17.88;ReadPosRankSum=1.260;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1946,222,0 chrVIII 193183 . T G 1817 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.715;DP=111;Dels=0.00;FS=9.037;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=8;MQRankSum=-0.991;QD=16.37;ReadPosRankSum=2.146;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:6,105:111:99:1850,147,0 chrVIII 193557 . A T 201.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=103;Dels=0.03;FS=2.149;HaplotypeScore=35.5905;MLEAC=1;MLEAF=0.500;MQ=51.85;MQ0=0;MQRankSum=3.427;QD=1.95;ReadPosRankSum=2.454;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:21,79:100:99:231,0,155 chrVIII 193626 . G C 2138 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=11.3005;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.52;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:2171,252,0 chrVIII 193633 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.91;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2246,261,0 chrVIII 193797 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.076;QD=18.85;ReadPosRankSum=2.389;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1560,180,0 chrVIII 193875 . C A 1997 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=18.84;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2030,228,0 chrVIII 193991 . A G 2291 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.02;FS=0.000;HaplotypeScore=13.2983;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.90;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2324,276,0 chrVIII 194031 . C A 311 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=76.2031;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=2.57;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:42:344,42,0 chrVIII 194167 . T A 1292 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=9;QD=15.57;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1325,150,0 chrVIII 194191 . G A 1399 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=4;QD=13.85;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1432,162,0 chrVIII 194221 . G T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;DP=112;Dels=0.00;FS=86.746;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=43.98;MQ0=1;MQRankSum=-6.497;QD=0.38;ReadPosRankSum=-0.976;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,31:112:73:73,0,1539 chrVIII 194236 . G A 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DP=113;Dels=0.00;FS=91.381;HaplotypeScore=6.5018;MLEAC=1;MLEAF=0.500;MQ=47.01;MQ0=0;MQRankSum=-5.171;QD=0.85;ReadPosRankSum=-1.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,31:113:99:126,0,1528 chrVIII 194338 . A G 362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;DP=98;Dels=0.00;FS=80.051;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=38.00;MQ0=4;MQRankSum=-2.757;QD=3.69;ReadPosRankSum=0.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,39:98:99:392,0,1139 chrVIII 194377 . C T 1023.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;DP=116;Dels=0.00;FS=95.965;HaplotypeScore=8.0357;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=3;MQRankSum=-4.005;QD=8.82;ReadPosRankSum=1.622;SB=-5.490e+02 GT:AD:DP:GQ:PL 0/1:58,58:116:99:1053,0,638 chrVIII 194446 . T G 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.281;DP=134;Dels=0.00;FS=96.566;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=32.40;MQ0=10;MQRankSum=2.476;QD=1.51;ReadPosRankSum=-1.932;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,48:134:99:233,0,1373 chrVIII 194526 . G A 1322 filter AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=8;QD=13.77;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1355,153,0 chrVIII 194530 . G A 1305 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=41.15;MQ0=4;QD=14.66;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1338,150,0 chrVIII 194575 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=1;QD=16.59;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1476,165,0 chrVIII 194824 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=16.63;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1214,141,0 chrVIII 195005 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=15.515;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.624;QD=23.44;ReadPosRankSum=2.328;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1932,222,0 chrVIII 195121 . T C 979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.429;QD=19.98;ReadPosRankSum=2.350;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1012,117,0 chrVIII 195157 . C A 1061 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.98;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1094,120,0 chrVIII 195175 . C G 1096 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=16.86;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1129,129,0 chrVIII 195216 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.97;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1219,138,0 chrVIII 195259 . T C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.353;QD=18.72;ReadPosRankSum=1.678;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1231,144,0 chrVIII 195515 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.56;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1542,177,0 chrVIII 196160 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.41;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2110,240,0 chrVIII 196468 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.69;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1595,183,0 chrVIII 196532 . A G 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.516;QD=19.29;ReadPosRankSum=1.689;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1576,177,0 chrVIII 196732 . T C 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=4.111;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.732;QD=15.27;ReadPosRankSum=1.681;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1056,123,0 chrVIII 196816 . A G 983 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.66;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1016,114,0 chrVIII 196831 . C T 927 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.54;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:960,111,0 chrVIII 196858 . T C 971 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.67;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1004,114,0 chrVIII 197020 . A G 542 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.36;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:66:575,66,0 chrVIII 197407 . T C 1504 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.14;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1537,180,0 chrVIII 197491 . A G 953 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:986,117,0 chrVIII 197728 . T A 1705 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.53;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1738,192,0 chrVIII 198043 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.88;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1455,168,0 chrVIII 198244 . T A 1180 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.07;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1213,135,0 chrVIII 199180 . C T 2301 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0119;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.50;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2334,267,0 chrVIII 199295 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=17.41;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1252,144,0 chrVIII 199315 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=17.58;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1404,156,0 chrVIII 199325 . C A 1197 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=14.78;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1230,138,0 chrVIII 199349 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.75;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1155,132,0 chrVIII 199484 . A G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=114;Dels=0.00;FS=2.887;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-1.371;QD=17.89;ReadPosRankSum=2.407;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2072,234,0 chrVIII 199485 . T C 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.732;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.453;QD=17.96;ReadPosRankSum=1.701;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2063,234,0 chrVIII 199794 . T C 2176 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1967;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.34;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2209,252,0 chrVIII 199973 . T G 1027 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=15.80;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1060,123,0 chrVIII 200213 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=7.4821;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.494;QD=19.38;ReadPosRankSum=1.698;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2010,237,0 chrVIII 200350 . A G 948 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=15.05;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:981,114,0 chrVIII 200357 . G A 930 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=14.31;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:963,108,0 chrVIII 200453 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.09;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1668,186,0 chrVIII 200500 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.85;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2249,249,0 chrVIII 200720 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.68;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1453,165,0 chrVIII 200796 . T G 2018 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.70;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2051,234,0 chrVIII 201388 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=14.76;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:889,105,0 chrVIII 201398 . T C 1093 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=15.61;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1126,126,0 chrVIII 201590 . T G 1050 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.75;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1083,126,0 chrVIII 201645 . C A 860 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=17.55;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:893,99,0 chrVIII 201673 . G A 757 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.11;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:87:790,87,0 chrVIII 202143 . T G 1460 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.28;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1493,177,0 chrVIII 202179 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.66;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1231,138,0 chrVIII 202307 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=21.31;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2292,252,0 chrVIII 202480 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.74;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2038,240,0 chrVIII 202565 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=12.99;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1345,156,0 chrVIII 202580 . G A 1262 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=0;QD=12.50;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1295,144,0 chrVIII 202587 . G A 1304 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;QD=13.31;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1337,147,0 chrVIII 202588 . G C 1283 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;QD=12.58;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1316,153,0 chrVIII 202621 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=12.63;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1258,138,0 chrVIII 202622 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=11.90;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1211,141,0 chrVIII 202635 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.070;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-0.804;QD=13.18;ReadPosRankSum=1.696;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1311,150,0 chrVIII 202737 . A C 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.29;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,198,0 chrVIII 202824 . A T 1548 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=23.82;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1581,177,0 chrVIII 202861 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=21.10;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1721,192,0 chrVIII 202908 . T C 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;MQRankSum=-0.778;QD=20.12;ReadPosRankSum=1.697;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2005,234,0 chrVIII 203042 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.80;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1781,210,0 chrVIII 203086 . T C 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.209;QD=18.15;ReadPosRankSum=1.618;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,90:94:99:1739,198,0 chrVIII 203098 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.12;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1945,219,0 chrVIII 203114 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.63;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1937,222,0 chrVIII 203151 . A G 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.436;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.762;QD=17.79;ReadPosRankSum=1.686;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1385,162,0 chrVIII 203233 . C G 1203 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=17.43;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1236,141,0 chrVIII 203255 . T G 1361 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=16.60;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1394,159,0 chrVIII 203274 . C A 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.694;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;MQRankSum=-1.232;QD=16.16;ReadPosRankSum=0.678;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1471,159,0 chrVIII 203292 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=12.16;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1115,129,0 chrVIII 203300 . C G 1093 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=12.56;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1126,129,0 chrVIII 203310 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=12.52;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1085,123,0 chrVIII 203446 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.142;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.143;QD=20.84;ReadPosRankSum=1.700;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2305,261,0 chrVIII 203456 . C G 1961 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.01;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1994,228,0 chrVIII 204098 . T G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=2.719;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.438;QD=21.32;ReadPosRankSum=2.255;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1675,176,0 chrVIII 204287 . T C 3052 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.1044;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:3085,348,0 chrVIII 204484 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.2221;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.48;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2351,270,0 chrVIII 204704 . T C 2677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0593;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.549;QD=21.59;ReadPosRankSum=1.648;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2710,315,0 chrVIII 204879 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=15.15;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2002,231,0 chrVIII 204882 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.12;SB=-1.684e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2096,228,0 chrVIII 205191 . A C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=16.4205;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.370;QD=16.24;ReadPosRankSum=1.692;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,86:91:99:1511,177,0 chrVIII 205278 . A T 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.266;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.466;QD=15.44;ReadPosRankSum=1.699;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1639,186,0 chrVIII 205476 . C A 1109 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.06;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1142,132,0 chrVIII 205723 . A C 1514 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.24;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1547,180,0 chrVIII 205872 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0750;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.23;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1712,189,0 chrVIII 206031 . A C 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.108;QD=17.26;ReadPosRankSum=1.675;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1086,126,0 chrVIII 206103 . A G 845 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:878,102,0 chrVIII 206439 . C A 881 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.02;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:914,105,0 chrVIII 206460 . G A 752 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.79;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:785,87,0 chrVIII 207052 . T A 1958 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=16.0468;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=14.29;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1991,228,0 chrVIII 207354 . T A 1319 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.27;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1352,150,0 chrVIII 207624 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.4224;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.41;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2495,285,0 chrVIII 207734 . C T 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=5.159;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.732;QD=20.44;ReadPosRankSum=0.634;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1709,195,0 chrVIII 207746 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=17.21;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1341,156,0 chrVIII 208566 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2177,237,0 chrVIII 208844 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.90;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1844,213,0 chrVIII 209079 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1635,183,0 chrVIII 209243 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.01;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1668,186,0 chrVIII 210710 . A T 371 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=16.86;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:404,45,0 chrVIII 211042 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.95;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:691,78,0 chrVIII 211315 . C T 1938 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.53;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1971,216,0 chrVIII 211462 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.50;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1338,153,0 chrVIII 211534 . T A 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.443;QD=19.44;ReadPosRankSum=1.652;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1724,201,0 chrVIII 211639 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.1173;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.112;QD=19.29;ReadPosRankSum=1.696;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1885,216,0 chrVIII 211701 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1995,222,0 chrVIII 212243 . C G 683 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.09;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:716,81,0 chrVIII 212293 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=3;QD=16.81;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:554,60,0 chrVIII 212536 . C T 42.97 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=23;QD=1.34;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:9:75,9,0 chrVIII 215821 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.38;MQ0=16;MQRankSum=0.727;QD=2.25;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,18:20:9:77,9,0 chrVIII 216012 . C T 840 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=6;QD=16.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:96:873,96,0 chrVIII 216014 . G A 749 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=6;QD=13.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:54:93:782,93,0 chrVIII 216123 . C T 604 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=14;QD=14.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:72:637,72,0 chrVIII 216235 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=2;QD=20.05;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1657,192,0 chrVIII 216311 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=20.95;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1835,207,0 chrVIII 216338 . C G 1693 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.43;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1726,198,0 chrVIII 216707 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.51;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1421,165,0 chrVIII 216814 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5395;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1812,213,0 chrVIII 216920 . A G 1263 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.37;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1296,150,0 chrVIII 216971 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1207,141,0 chrVIII 217298 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.843;QD=18.81;ReadPosRankSum=1.592;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1444,171,0 chrVIII 217419 . C T 1883 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.47;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1916,216,0 chrVIII 217469 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=6.511;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.261;QD=23.37;ReadPosRankSum=1.698;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2440,279,0 chrVIII 217536 . A G 2106 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.06;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2139,243,0 chrVIII 218120 . C T 2634 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=20.42;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2667,294,0 chrVIII 218140 . T A 2134 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=15.24;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2167,243,0 chrVIII 218141 . G T 2220 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=15.97;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2253,246,0 chrVIII 218152 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=15.60;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2201,243,0 chrVIII 218189 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=137;Dels=0.00;FS=8.988;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=-0.458;QD=14.38;ReadPosRankSum=2.414;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2003,237,0 chrVIII 218210 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9812;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=16.78;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2198,252,0 chrVIII 219038 . A G 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=6.914;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.548;QD=23.47;ReadPosRankSum=1.671;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2685,306,0 chrVIII 219192 . T C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.736;QD=17.86;ReadPosRankSum=1.685;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1337,153,0 chrVIII 219407 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.44;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2004,237,0 chrVIII 219461 . C A 1357 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.86;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1390,153,0 chrVIII 219926 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.34;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1948,225,0 chrVIII 219934 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=4.592;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.966;QD=19.21;ReadPosRankSum=1.659;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1916,216,0 chrVIII 220140 . T C 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.985;DP=78;Dels=0.00;FS=2.351;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.591;QD=19.62;ReadPosRankSum=3.947;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:6,72:78:99:1563,180,0 chrVIII 220151 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.17;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1940,213,0 chrVIII 220155 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.82;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1803,204,0 chrVIII 220635 . G A 2593 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.79;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2626,291,0 chrVIII 220853 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.51;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2374,255,0 chrVIII 221114 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1428,159,0 chrVIII 221510 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.74;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1670,195,0 chrVIII 221591 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1817,216,0 chrVIII 222260 . T C 1760 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.00;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1793,207,0 chrVIII 222295 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.03;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1308,153,0 chrVIII 222462 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.03;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1602,180,0 chrVIII 222996 . T C 1738 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1771,210,0 chrVIII 223354 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.74;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2859,318,0 chrVIII 223543 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.83;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2036,228,0 chrVIII 223561 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=15.32;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1795,195,0 chrVIII 223600 . G A 2133 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.34;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2166,237,0 chrVIII 223615 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=16.75;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2077,234,0 chrVIII 223699 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.00;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2028,231,0 chrVIII 223791 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.36;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1685,192,0 chrVIII 224759 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.02;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1034,117,0 chrVIII 225422 . A C 1170 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.53;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1203,138,0 chrVIII 225584 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.45;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1694,192,0 chrVIII 225748 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.25;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1815,210,0 chrVIII 225822 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.569;QD=20.99;ReadPosRankSum=1.699;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2258,258,0 chrVIII 225911 . G C 2711 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.5643;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.54;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:0,125:132:99:2744,309,0 chrVIII 226158 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.65;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1869,213,0 chrVIII 226482 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.99;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1533,177,0 chrVIII 226755 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.9435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1749,198,0 chrVIII 226805 . G T 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.649;QD=19.12;ReadPosRankSum=1.148;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1620,183,0 chrVIII 227323 . T G 1206 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1239,147,0 chrVIII 227411 . G A 2867 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.93;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2900,321,0 chrVIII 227429 . A G 2253 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.32;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2286,261,0 chrVIII 227444 . T C 2020 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=16.83;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2053,246,0 chrVIII 227519 . A G 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=7.659;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.485;QD=23.31;ReadPosRankSum=1.683;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1665,198,0 chrVIII 227916 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=15.01;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1219,138,0 chrVIII 227951 . A C 1082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=5.545;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.988;QD=13.52;ReadPosRankSum=2.912;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1115,129,0 chrVIII 227964 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=13.83;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1029,114,0 chrVIII 228006 . G C 1355 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.73;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1388,159,0 chrVIII 228015 . A G 1707 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.97;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1740,195,0 chrVIII 228402 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.15;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2403,270,0 chrVIII 228507 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.30;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1991,222,0 chrVIII 228696 . G C 1327 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.51;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1360,162,0 chrVIII 228831 . G C 1411 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.09;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1444,174,0 chrVIII 228850 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.93;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1687,189,0 chrVIII 228881 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.29;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1248,141,0 chrVIII 228903 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.80;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1302,150,0 chrVIII 229020 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1051,117,0 chrVIII 229142 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.154;DP=55;Dels=0.00;FS=9.199;HaplotypeScore=9.2018;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.347;QD=19.84;ReadPosRankSum=3.286;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:4,50:55:99:1124,132,0 chrVIII 229184 . T A 687 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.6413;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=14.02;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:720,81,0 chrVIII 229265 . G C 1055 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=17.30;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1088,129,0 chrVIII 229427 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.75;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1257,141,0 chrVIII 229448 . T C 1046 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.37;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1079,123,0 chrVIII 229583 . T C 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=71;Dels=0.00;FS=3.274;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=2;MQRankSum=-0.255;QD=20.35;ReadPosRankSum=1.681;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1478,168,0 chrVIII 229613 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=2;QD=19.33;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1367,162,0 chrVIII 229640 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=2;QD=18.72;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1306,144,0 chrVIII 229946 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.77;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1490,162,0 chrVIII 230265 . C G 1314 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.53;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:64:99:1347,153,0 chrVIII 230282 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.89;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1621,183,0 chrVIII 230390 . A G 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=4.096;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.414;QD=22.57;ReadPosRankSum=1.701;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,112:116:99:2651,306,0 chrVIII 230432 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=115;Dels=0.00;FS=3.049;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.904;QD=19.97;ReadPosRankSum=-0.322;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2330,270,0 chrVIII 230585 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.00;FS=3.921;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.375;QD=19.84;ReadPosRankSum=1.685;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1541,174,0 chrVIII 230898 . T G 2468 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.85;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2501,282,0 chrVIII 230930 . G C 2004 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2037,240,0 chrVIII 231163 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.04;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2057,234,0 chrVIII 231221 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.46;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2734,300,0 chrVIII 231290 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=103;Dels=0.00;FS=2.918;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.605;QD=19.22;ReadPosRankSum=2.401;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2013,231,0 chrVIII 231411 . T G 1679 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.66;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1712,195,0 chrVIII 231416 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.78;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1723,195,0 chrVIII 231446 . A C 1433 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.06;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1466,174,0 chrVIII 231534 . C A 2071 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.80;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2104,237,0 chrVIII 231674 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.04;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1711,192,0 chrVIII 231797 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.2042;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.01;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1241,144,0 chrVIII 231830 . T C 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.594;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.914;QD=17.64;ReadPosRankSum=1.684;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1303,147,0 chrVIII 232078 . C A 2465 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.82;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2498,273,0 chrVIII 232102 . G C 1814 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.85;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1847,210,0 chrVIII 232174 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1664,186,0 chrVIII 232258 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.3336;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.358;QD=21.89;ReadPosRankSum=2.397;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2069,243,0 chrVIII 232321 . T C 2585 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2618,303,0 chrVIII 232438 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.49;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1990,219,0 chrVIII 232747 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.50;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2144,243,0 chrVIII 233140 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.71;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1787,210,0 chrVIII 233357 . A C 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.861;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.318;QD=16.48;ReadPosRankSum=1.661;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1648,192,0 chrVIII 233361 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.04;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1703,192,0 chrVIII 233431 . T C 2921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-2.046;QD=22.64;ReadPosRankSum=2.411;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2954,348,0 chrVIII 233495 . C A 2109 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=24.24;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2142,237,0 chrVIII 233526 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.540;QD=17.49;ReadPosRankSum=1.684;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1292,150,0 chrVIII 233556 . A C 1132 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=14.51;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1165,135,0 chrVIII 233563 . G A 1017 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=13.04;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1050,120,0 chrVIII 233566 . T A 946 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=12.61;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:979,111,0 chrVIII 233575 . C T 852 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=10.52;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:885,99,0 chrVIII 233885 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=20.51;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1838,207,0 chrVIII 234595 . A G 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.617;QD=13.99;ReadPosRankSum=1.694;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1292,150,0 chrVIII 234596 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=14.58;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1331,147,0 chrVIII 234687 . A T 2041 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.59;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2074,234,0 chrVIII 235081 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.17;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1629,186,0 chrVIII 235180 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1591,174,0 chrVIII 235729 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.626;QD=17.61;ReadPosRankSum=1.697;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1776,207,0 chrVIII 235973 . T G 1635 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.03;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1668,195,0 chrVIII 236137 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=132;Dels=0.00;FS=2.587;HaplotypeScore=13.0180;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.321;QD=20.09;ReadPosRankSum=2.855;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:3,129:132:99:2685,309,0 chrVIII 236191 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.5790;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.21;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2458,270,0 chrVIII 236914 . G A 850 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:883,99,0 chrVIII 237138 . T C 199.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.22;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:232,27,0 chrVIII 237146 . G A 133.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=8.32;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:166,18,0 chrVIII 237318 . T C 864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.272;QD=21.07;ReadPosRankSum=2.330;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:99:897,102,0 chrVIII 237328 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.42;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1154,129,0 chrVIII 237546 . A C 558 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=15.94;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:591,69,0 chrVIII 237556 . T C 496 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.03;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:60:529,60,0 chrVIII 237624 . G C 779 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=14.98;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:52:96:812,96,0 chrVIII 237696 . T G 452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.217;QD=14.12;ReadPosRankSum=1.191;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:57:485,57,0 chrVIII 237787 . C G 190.01 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=11.18;SB=-7.102e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:27:223,27,0 chrVIII 237837 . G T 103.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=12.91;SB=-7.930e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:136,15,0 chrVIII 237963 . G A 38.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=5.57;SB=-4.947e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:71,9,0 chrVIII 237971 . G A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;MQRankSum=-0.198;QD=5.71;ReadPosRankSum=0.198;SB=-3.421e+01 GT:AD:DP:GQ:PL 1/1:2,5:7:9:72,9,0 chrVIII 237974 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=7.99;SB=-2.547e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:72,9,0 chrVIII 237989 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.97;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrVIII 237992 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.97;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrVIII 238170 . T C 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.861;QD=22.08;ReadPosRankSum=2.405;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2462,276,0 chrVIII 238190 . C T 2440 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.79;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2473,279,0 chrVIII 238456 . A G 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=2.762;HaplotypeScore=11.1975;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.286;QD=19.69;ReadPosRankSum=2.344;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,114:117:99:2337,276,0 chrVIII 238746 . C G 658 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=12.42;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:78:691,78,0 chrVIII 238800 . G C 967 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.15;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1000,117,0 chrVIII 238812 . A C 928 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.17;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:961,111,0 chrVIII 239033 . G T 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.82;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1699,192,0 chrVIII 239069 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.51;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1775,207,0 chrVIII 239223 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=14.53;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:963,111,0 chrVIII 239430 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.18;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1960,222,0 chrVIII 239745 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.95;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1118,132,0 chrVIII 240144 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2005,225,0 chrVIII 240417 . G A 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.0091;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.265;QD=19.04;ReadPosRankSum=1.705;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2432,270,0 chrVIII 240975 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.12;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1554,171,0 chrVIII 241470 . C A 920 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.17;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:953,105,0 chrVIII 241744 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.25;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1056,117,0 chrVIII 241982 . G C 1768 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.61;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1801,204,0 chrVIII 242062 . C T 917 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=54.7359;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=14.79;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:950,120,0 chrVIII 242300 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.52;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1264,141,0 chrVIII 242304 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=20.93;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1289,141,0 chrVIII 242318 . T A 1255 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=16.96;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1288,144,0 chrVIII 242526 . T C 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;MQRankSum=0.171;QD=20.15;ReadPosRankSum=1.656;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1867,207,0 chrVIII 242816 . A C 2309 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.7385;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.74;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2342,279,0 chrVIII 243367 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.87;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2701,315,0 chrVIII 243508 . G C 2584 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.43;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2617,300,0 chrVIII 243772 . G A 2532 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.33;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2565,297,0 chrVIII 244222 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.99;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1918,219,0 chrVIII 244248 . A C 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=3.261;HaplotypeScore=6.8831;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.032;QD=20.36;ReadPosRankSum=1.693;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1906,219,0 chrVIII 244339 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.76;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2009,228,0 chrVIII 244894 . T C 1730 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.80;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1763,201,0 chrVIII 245608 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=59.7195;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.49;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1857,204,0 chrVIII 245718 . A T 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=131;Dels=0.00;FS=3.042;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=0.010;QD=19.95;ReadPosRankSum=2.412;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2646,288,0 chrVIII 245722 . A T 2542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.191;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.239;QD=20.67;ReadPosRankSum=1.704;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2575,288,0 chrVIII 245732 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.74;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2319,261,0 chrVIII 245779 . A G 2271 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=20.46;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2304,264,0 chrVIII 245791 . T A 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.02;FS=7.095;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=0.422;QD=20.55;ReadPosRankSum=2.404;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2293,258,0 chrVIII 245815 . A C 2117 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.05;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2150,249,0 chrVIII 245841 . A T 1263 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=16.84;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1296,147,0 chrVIII 245849 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=17.57;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1175,132,0 chrVIII 245924 . T G 1940 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.32;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1973,225,0 chrVIII 245947 . C T 2183 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.40;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2216,246,0 chrVIII 246142 . T C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-0.993;QD=21.47;ReadPosRankSum=1.693;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1944,225,0 chrVIII 246363 . T C 1493 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=16.78;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1526,174,0 chrVIII 246987 . T C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=2.930;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.128;QD=20.41;ReadPosRankSum=2.404;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2237,261,0 chrVIII 247398 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1528,174,0 chrVIII 247659 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.21;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1084,120,0 chrVIII 247932 . A C 1687 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.49;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1720,201,0 chrVIII 248016 . T C 1281 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.41;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1314,150,0 chrVIII 248019 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.33;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1316,144,0 chrVIII 248390 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=51.1601;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.47;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1159,129,0 chrVIII 248418 . T A 1298 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.63;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1331,147,0 chrVIII 248505 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.03;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1576,174,0 chrVIII 250465 . G C 1189 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.02;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1222,138,0 chrVIII 250494 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.37;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1174,135,0 chrVIII 250546 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.46;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1179,138,0 chrVIII 250575 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.20;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1125,129,0 chrVIII 250577 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=17.97;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1111,129,0 chrVIII 250612 . A C 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.517;QD=17.17;ReadPosRankSum=1.611;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1029,117,0 chrVIII 250683 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.27;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1087,129,0 chrVIII 250856 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.13;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1195,135,0 chrVIII 250913 . A T 1111 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.49;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1144,129,0 chrVIII 250921 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.36;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1156,129,0 chrVIII 250924 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.69;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1077,126,0 chrVIII 251694 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1226,144,0 chrVIII 252321 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.30;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1819,210,0 chrVIII 252968 . C G 2103 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=61.71;MQ0=0;QD=18.61;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2136,252,0 chrVIII 253019 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=17.13;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1609,180,0 chrVIII 253198 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=19.2518;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=13.14;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,147:149:99:1991,225,0 chrVIII 253492 . A C 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.657;QD=19.70;ReadPosRankSum=1.582;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:939,111,0 chrVIII 253745 . T A 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=4.236;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.369;QD=20.84;ReadPosRankSum=1.675;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1325,153,0 chrVIII 253999 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.93;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1986,228,0 chrVIII 254158 . A T 1825 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.47;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1858,204,0 chrVIII 254195 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.22;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2299,261,0 chrVIII 254246 . A C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=103;Dels=0.00;FS=11.256;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.716;QD=19.08;ReadPosRankSum=2.932;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1998,231,0 chrVIII 254330 . T C 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.017;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.434;QD=19.67;ReadPosRankSum=1.673;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1174,135,0 chrVIII 254741 . T A 1331 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1364,150,0 chrVIII 255648 . A G 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.834;QD=18.71;ReadPosRankSum=1.668;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1062,126,0 chrVIII 256537 . T A 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=4.127;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.624;QD=22.47;ReadPosRankSum=1.501;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1741,192,0 chrVIII 257019 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.44;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1151,126,0 chrVIII 257199 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1543,174,0 chrVIII 257343 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.26;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1776,198,0 chrVIII 257535 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.90;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,135,0 chrVIII 257946 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.25;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1246,144,0 chrVIII 257988 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=15.64;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1034,114,0 chrVIII 258000 . A G 895 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=14.92;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:928,105,0 chrVIII 258006 . C G 905 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=14.37;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:938,108,0 chrVIII 258019 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=14.35;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:937,105,0 chrVIII 258412 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.55;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1675,192,0 chrVIII 258469 . T C 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.238;QD=18.23;ReadPosRankSum=1.698;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1892,213,0 chrVIII 258472 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=17.58;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1791,207,0 chrVIII 258556 . A G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.490;QD=20.07;ReadPosRankSum=1.667;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1117,129,0 chrVIII 258587 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.39;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1059,117,0 chrVIII 258754 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=77;Dels=0.00;FS=5.820;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.118;QD=19.81;ReadPosRankSum=2.909;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1558,180,0 chrVIII 259012 . C T 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.969;QD=21.93;ReadPosRankSum=1.497;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1327,150,0 chrVIII 259045 . A G 950 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=18.63;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:983,114,0 chrVIII 259495 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.65;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1188,144,0 chrVIII 259588 . T C 814 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.00;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:847,99,0 chrVIII 259909 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.87;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1222,141,0 chrVIII 260343 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.09;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1270,147,0 chrVIII 261028 . T C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=2.974;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.148;QD=20.39;ReadPosRankSum=2.384;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1562,177,0 chrVIII 261353 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.75;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2152,249,0 chrVIII 261638 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3995;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.509;QD=19.70;ReadPosRankSum=1.658;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1885,219,0 chrVIII 261724 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.97;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2130,234,0 chrVIII 262417 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.04;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1163,132,0 chrVIII 262597 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.79;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1029,111,0 chrVIII 262610 . A G 871 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.55;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:904,105,0 chrVIII 262624 . C G 968 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=15.87;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1001,117,0 chrVIII 262647 . A G 1117 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=15.73;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1150,132,0 chrVIII 262734 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.00;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2217,243,0 chrVIII 262834 . G T 3081 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.82;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3114,345,0 chrVIII 262846 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.37;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2763,315,0 chrVIII 262967 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.01;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1564,171,0 chrVIII 263016 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.60;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1461,162,0 chrVIII 263049 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=107;Dels=0.00;FS=3.351;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=-1.503;QD=17.92;ReadPosRankSum=1.699;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:1950,222,0 chrVIII 263170 . A G 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.431;QD=20.95;ReadPosRankSum=1.619;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1960,225,0 chrVIII 263207 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.32;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1707,189,0 chrVIII 263248 . T G 1721 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.49;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1754,204,0 chrVIII 263272 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.507;QD=18.80;ReadPosRankSum=1.648;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1593,180,0 chrVIII 263279 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=5.8921;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.355;QD=16.84;ReadPosRankSum=1.690;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1431,165,0 chrVIII 263344 . A G 1487 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.09;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1520,177,0 chrVIII 263629 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.12;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1934,213,0 chrVIII 264180 . G C 1945 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0836;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=19.07;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1978,228,0 chrVIII 264439 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.69;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1982,234,0 chrVIII 264529 . C T 2160 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.04;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2193,246,0 chrVIII 264628 . T C 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=3.358;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.080;QD=14.09;ReadPosRankSum=1.519;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:963,108,0 chrVIII 264793 . A G 2137 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.79;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2170,255,0 chrVIII 264810 . T G 2101 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.11;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2134,246,0 chrVIII 264901 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.38;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1389,165,0 chrVIII 264973 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1260,138,0 chrVIII 265200 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.23;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1398,153,0 chrVIII 265246 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.74;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1316,153,0 chrVIII 266203 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.77;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:859,102,0 chrVIII 266440 . T C 691 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.74;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:724,84,0 chrVIII 266757 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.00;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:850,93,0 chrVIII 267185 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=15.53;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1384,159,0 chrVIII 267471 . C A 2030 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.33;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2063,225,0 chrVIII 267475 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=18.81;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2064,231,0 chrVIII 267487 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.429;QD=17.50;ReadPosRankSum=0.370;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2080,240,0 chrVIII 267488 . C T 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=1.028;QD=17.86;ReadPosRankSum=0.382;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2140,243,0 chrVIII 267649 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.69;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1608,183,0 chrVIII 268032 . A G 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.793;QD=19.68;ReadPosRankSum=1.674;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1194,138,0 chrVIII 268052 . G A 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.039;QD=19.67;ReadPosRankSum=0.400;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1351,147,0 chrVIII 268975 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.12;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1743,189,0 chrVIII 268980 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=6.189;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.577;QD=17.72;ReadPosRankSum=2.388;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1433,165,0 chrVIII 269395 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.04;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2177,255,0 chrVIII 269545 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2252,243,0 chrVIII 270109 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.275;QD=20.81;ReadPosRankSum=1.667;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1136,129,0 chrVIII 270259 . T C 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DP=57;Dels=0.00;FS=3.332;HaplotypeScore=3.5731;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.361;QD=17.86;ReadPosRankSum=0.804;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1051,120,0 chrVIII 270272 . C T 1091 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.84;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1124,123,0 chrVIII 271196 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.64;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1938,219,0 chrVIII 271984 . C A 922 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.49;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:955,111,0 chrVIII 272308 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.359;QD=22.42;ReadPosRankSum=1.679;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1535,177,0 chrVIII 272512 . C G 2797 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.35;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2830,333,0 chrVIII 272617 . A G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=90;Dels=0.00;FS=10.251;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.725;QD=20.44;ReadPosRankSum=2.395;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1873,222,0 chrVIII 272785 . G C 2416 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=14.2949;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.17;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2449,285,0 chrVIII 273067 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.49;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1904,210,0 chrVIII 273164 . A C 1588 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.54;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1621,186,0 chrVIII 273178 . A T 1529 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3115;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=16.27;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1562,174,0 chrVIII 273214 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.18;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1445,159,0 chrVIII 273222 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=14.81;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1366,153,0 chrVIII 273274 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.89;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1375,156,0 chrVIII 273346 . T C 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.976;QD=20.30;ReadPosRankSum=1.692;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1799,204,0 chrVIII 273660 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.08;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1298,144,0 chrVIII 274227 . T C 702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=52;Dels=0.00;FS=13.059;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.327;QD=13.50;ReadPosRankSum=2.819;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:3,47:52:84:735,84,0 chrVIII 274295 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.81;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:870,96,0 chrVIII 274614 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.72;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1054,117,0 chrVIII 274785 . C G 806 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.66;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:96:839,96,0 chrVIII 275100 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.88;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1325,147,0 chrVIII 275496 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.42;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1761,198,0 chrVIII 276173 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.65;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1153,126,0 chrVIII 276531 . T A 1154 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1187,135,0 chrVIII 276657 . C G 495 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:60:528,60,0 chrVIII 276701 . T A 449 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.48;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:54:482,54,0 chrVIII 276706 . A T 401 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=12.53;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:48:434,48,0 chrVIII 276928 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.96;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2070,237,0 chrVIII 277609 . G T 1528 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.79;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1561,171,0 chrVIII 277837 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.40;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1975,219,0 chrVIII 278185 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.11;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1682,192,0 chrVIII 278206 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.68;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1522,174,0 chrVIII 278298 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.010;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.371;QD=20.90;ReadPosRankSum=1.660;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2039,237,0 chrVIII 278404 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1852,201,0 chrVIII 278439 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.81;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1745,195,0 chrVIII 278605 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.56;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2534,288,0 chrVIII 278773 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1892,213,0 chrVIII 278857 . A T 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.563;QD=19.24;ReadPosRankSum=1.607;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1630,186,0 chrVIII 279016 . A G 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.629;DP=104;Dels=0.00;FS=20.675;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.238;QD=20.05;ReadPosRankSum=3.752;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:5,98:104:99:2118,237,0 chrVIII 279197 . T G 1861 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.61;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1894,219,0 chrVIII 279235 . T A 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.76;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1673,189,0 chrVIII 279595 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.32;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1696,195,0 chrVIII 279622 . T C 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.130;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.709;QD=20.17;ReadPosRankSum=1.693;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1828,213,0 chrVIII 279897 . T C 1035 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.97;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1068,123,0 chrVIII 280101 . C T 674 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=12.96;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:707,78,0 chrVIII 280206 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:978,114,0 chrVIII 280455 . C T 1146 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.22;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1179,132,0 chrVIII 280864 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.78;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2059,240,0 chrVIII 282666 . T G 455 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.038;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-1.501;QD=9.89;ReadPosRankSum=1.039;SB=-8.252e-03 GT:AD:DP:GQ:PL 1/1:1,44:46:37:488,37,0 chrVIII 282921 . A T 1198 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.72;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1231,135,0 chrVIII 282930 . T C 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-1.579;QD=16.72;ReadPosRankSum=1.681;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1187,135,0 chrVIII 283226 . T C 726 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.29;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:759,90,0 chrVIII 283475 . A G 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=27.4763;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.977;QD=17.63;ReadPosRankSum=1.643;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,77:82:99:1496,171,0 chrVIII 283558 . A C 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=72;Dels=0.00;FS=15.745;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.356;QD=20.93;ReadPosRankSum=3.306;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:4,68:72:99:1540,177,0 chrVIII 283616 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.655;QD=21.53;ReadPosRankSum=2.263;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1454,168,0 chrVIII 283677 . T A 1182 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=19.38;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1215,138,0 chrVIII 283957 . T C 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.516;QD=13.28;ReadPosRankSum=1.695;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1281,147,0 chrVIII 283960 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.332;QD=13.73;ReadPosRankSum=1.695;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1324,153,0 chrVIII 284047 . C G 1619 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.40;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1652,189,0 chrVIII 284075 . A G 1528 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.10;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1561,183,0 chrVIII 284128 . A G 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=66;Dels=0.00;FS=9.149;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.209;QD=18.36;ReadPosRankSum=2.374;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:99:1245,138,0 chrVIII 284685 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1759,198,0 chrVIII 284827 . T A 2459 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.21;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2492,279,0 chrVIII 284832 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=15.72;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2140,240,0 chrVIII 285198 . A G 1662 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.26;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1695,192,0 chrVIII 285289 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.86;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1408,159,0 chrVIII 285301 . G A 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.481;QD=18.22;ReadPosRankSum=-1.203;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1345,150,0 chrVIII 285977 . A T 1015 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.20;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1048,117,0 chrVIII 286244 . C A 1421 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1454,162,0 chrVIII 286666 . G C 1355 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.22;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1388,159,0 chrVIII 286796 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:751,84,0 chrVIII 286830 . T C 757 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.60;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:790,93,0 chrVIII 287123 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1375,165,0 chrVIII 287306 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.29;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1879,222,0 chrVIII 287666 . A G 820 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=8.82;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:853,102,0 chrVIII 287669 . A C 845 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=9.39;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:878,102,0 chrVIII 287671 . A T 853 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=9.58;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:886,99,0 chrVIII 287675 . G C 725 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.05;MQ0=0;QD=8.15;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:90:758,90,0 chrVIII 287678 . A G 884 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=9.31;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:917,108,0 chrVIII 287699 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.82;MQ0=0;QD=11.68;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1201,132,0 chrVIII 287702 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=10.21;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:1166,138,0 chrVIII 287885 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.72;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1362,156,0 chrVIII 288884 . T G 1321 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1354,153,0 chrVIII 289028 . A T 199.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:232,27,0 chrVIII 289350 . A G 144.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.08;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,11:13:21:177,21,0 chrVIII 289695 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.95;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:934,108,0 chrVIII 289811 . A T 1861 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.70;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1894,210,0 chrVIII 289865 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.02;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1114,129,0 chrVIII 290253 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.481;QD=18.54;ReadPosRankSum=1.684;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1368,156,0 chrVIII 290614 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=63.2398;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.33;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1316,147,0 chrVIII 290681 . C A 960 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.20;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:993,108,0 chrVIII 290711 . A C 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-0.346;QD=15.63;ReadPosRankSum=1.675;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:971,111,0 chrVIII 290747 . T C 731 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=62.9990;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=10.75;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:87:764,87,0 chrVIII 290766 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=10.19;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:90:797,90,0 chrVIII 290789 . A G 774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=-1.400;QD=8.15;ReadPosRankSum=1.658;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:93:807,93,0 chrVIII 290790 . C A 921 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=9.59;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:954,111,0 chrVIII 290985 . G A 1751 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=23.66;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1784,201,0 chrVIII 291084 . T A 2679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=1.643;QD=22.90;ReadPosRankSum=1.614;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2712,303,0 chrVIII 291312 . G A 1461 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=5.2888;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=13.91;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1494,162,0 chrVIII 291315 . A G 1318 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=3.177;HaplotypeScore=6.6993;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;MQRankSum=-1.732;QD=12.43;ReadPosRankSum=1.536;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1351,156,0 chrVIII 291318 . G A 1068 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=105;Dels=0.00;FS=3.399;HaplotypeScore=7.6659;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;MQRankSum=-1.534;QD=10.17;ReadPosRankSum=1.699;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1101,126,0 chrVIII 291327 . T G 1125 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=174.1375;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=11.36;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1158,135,0 chrVIII 291360 . T G 620 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=6.97;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:75:653,75,0 chrVIII 291363 . A T 633 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=7.54;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:75:666,75,0 chrVIII 291381 . G A 505 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;QD=5.87;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:60:538,60,0 chrVIII 291396 . G A 477 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=5.42;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:57:510,57,0 chrVIII 291399 . A G 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.059;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=0.158;QD=6.58;ReadPosRankSum=2.393;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:69:599,69,0 chrVIII 291411 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=9.20;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:870,99,0 chrVIII 291471 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.23;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2439,267,0 chrVIII 291726 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2930;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=14.14;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1489,168,0 chrVIII 291731 . T C 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.388;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-0.505;QD=14.08;ReadPosRankSum=1.660;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1413,165,0 chrVIII 292143 . T G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=6.833;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.702;QD=18.71;ReadPosRankSum=2.335;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,105:108:99:2054,243,0 chrVIII 292176 . T G 1888 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.33;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1921,225,0 chrVIII 292435 . G A 741 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=15.12;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:774,87,0 chrVIII 292444 . A G 777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=48;Dels=0.00;FS=2.659;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.618;QD=16.19;ReadPosRankSum=2.811;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:3,45:48:93:810,93,0 chrVIII 293342 . G T 677 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.16;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:710,81,0 chrVIII 293443 . G A 519 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.22;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:552,60,0 chrVIII 293487 . G A 465 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=16.61;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:498,54,0 chrVIII 293518 . C T 269 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=12.23;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:302,33,0 chrVIII 293740 . A G 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.02;FS=3.522;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.116;QD=21.57;ReadPosRankSum=1.655;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1025,117,0 chrVIII 293825 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=10.5486;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.38;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1272,147,0 chrVIII 293909 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.94;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1017,111,0 chrVIII 294060 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=19.72;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1157,129,0 chrVIII 294201 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=18.56;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1184,132,0 chrVIII 294204 . T G 1111 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.21;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1144,129,0 chrVIII 294314 . G A 1228 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.33;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1261,141,0 chrVIII 294317 . G C 1115 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.04;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1148,132,0 chrVIII 294397 . T C 520 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.86;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:63:553,63,0 chrVIII 294409 . A G 656 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=16.00;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:689,78,0 chrVIII 294412 . C T 642 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.46;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:675,75,0 chrVIII 294446 . T A 571 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=12.15;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:66:604,66,0 chrVIII 294447 . G A 565 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=10.87;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:66:598,66,0 chrVIII 294768 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=21.97;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1307,150,0 chrVIII 294900 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.19;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1991,219,0 chrVIII 294915 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.23;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1765,201,0 chrVIII 295200 . T G 964 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=16.34;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:997,120,0 chrVIII 295376 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.40;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1766,195,0 chrVIII 295445 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.93;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1585,183,0 chrVIII 295470 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.17;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1487,168,0 chrVIII 295620 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.67;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1728,192,0 chrVIII 296229 . T G 786 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=13.79;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:819,93,0 chrVIII 296571 . A T 807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=1.077;QD=21.81;ReadPosRankSum=1.639;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:96:840,96,0 chrVIII 296592 . C G 593 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.94;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:72:626,72,0 chrVIII 296619 . T G 619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=0.182;QD=16.29;ReadPosRankSum=1.641;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:75:652,75,0 chrVIII 296824 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=19.62;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2270,258,0 chrVIII 296845 . A G 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=5.038;HaplotypeScore=8.9244;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.690;QD=18.93;ReadPosRankSum=2.130;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2361,270,0 chrVIII 296890 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.19;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2252,243,0 chrVIII 296900 . T C 2082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.297;QD=17.50;ReadPosRankSum=2.907;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2115,243,0 chrVIII 297020 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.20;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1627,180,0 chrVIII 297072 . A T 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.337;QD=14.13;ReadPosRankSum=1.597;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1121,126,0 chrVIII 297074 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=12.55;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1012,114,0 chrVIII 297281 . G C 2724 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.79;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2757,318,0 chrVIII 297312 . A G 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.896;QD=18.84;ReadPosRankSum=1.672;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2219,258,0 chrVIII 297421 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.04;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1443,159,0 chrVIII 297669 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.40;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2071,228,0 chrVIII 297731 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.13;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1215,141,0 chrVIII 297766 . A G 1016 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.13;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1049,120,0 chrVIII 297814 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.84;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1422,159,0 chrVIII 297979 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.92;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1735,198,0 chrVIII 298388 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.99;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1628,183,0 chrVIII 298516 . A G 710 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:743,87,0 chrVIII 298725 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.03;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1575,171,0 chrVIII 298776 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.32;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1589,177,0 chrVIII 298950 . T A 1573 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.13;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1606,180,0 chrVIII 299178 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.10;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1445,162,0 chrVIII 299580 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.93;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2046,228,0 chrVIII 299583 . G C 1980 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.41;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2013,228,0 chrVIII 300270 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.38;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1582,174,0 chrVIII 300555 . A T 1983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.450;QD=23.06;ReadPosRankSum=1.692;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2016,222,0 chrVIII 300591 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.34;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1887,207,0 chrVIII 301054 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.05;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2096,243,0 chrVIII 301476 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.2889;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.13;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2463,267,0 chrVIII 302231 . A G 814 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.07;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:847,99,0 chrVIII 302232 . C A 762 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=14.94;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:795,87,0 chrVIII 302234 . C T 765 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.61;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:798,87,0 chrVIII 302366 . A T 1044 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.00;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1077,123,0 chrVIII 302367 . T A 1068 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.10;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1101,126,0 chrVIII 303228 . C T 1399 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.54;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1432,159,0 chrVIII 303510 . T A 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=3.660;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.433;QD=20.52;ReadPosRankSum=1.684;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1531,171,0 chrVIII 303765 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.11;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1342,147,0 chrVIII 304416 . A T 1521 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.25;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1554,174,0 chrVIII 304458 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.08;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1461,162,0 chrVIII 304461 . A C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.237;QD=18.26;ReadPosRankSum=1.687;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1439,162,0 chrVIII 305079 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.03;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1295,144,0 chrVIII 305112 . T A 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.577;QD=22.12;ReadPosRankSum=1.682;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1559,177,0 chrVIII 305712 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:98:99:1903,216,0 chrVIII 305835 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.20;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2215,255,0 chrVIII 305927 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.68;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1434,159,0 chrVIII 305989 . A C 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=73;Dels=0.00;FS=4.901;HaplotypeScore=18.9000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.815;QD=16.97;ReadPosRankSum=1.681;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,67:73:99:1272,147,0 chrVIII 306307 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.57;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1576,174,0 chrVIII 306390 . A G 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.214;QD=21.45;ReadPosRankSum=1.685;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1599,180,0 chrVIII 306720 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.3238;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.89;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1727,195,0 chrVIII 307188 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.04;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1485,171,0 chrVIII 307419 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=3.123;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.622;QD=20.00;ReadPosRankSum=1.643;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1633,189,0 chrVIII 307644 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1144,129,0 chrVIII 308157 . A G 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=51;Dels=0.00;FS=6.031;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.101;QD=17.10;ReadPosRankSum=2.862;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:99:905,102,0 chrVIII 308355 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.381;QD=21.57;ReadPosRankSum=1.688;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1737,201,0 chrVIII 308736 . C T 2635 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.96;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2668,300,0 chrVIII 308964 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.8882;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.210;QD=20.72;ReadPosRankSum=1.685;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,72:76:99:1608,186,0 chrVIII 309051 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.03;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2346,261,0 chrVIII 309105 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.10;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2230,258,0 chrVIII 309216 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.00;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2196,243,0 chrVIII 309312 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.35;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2040,237,0 chrVIII 309963 . A G 1045 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0979;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=15.60;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1078,123,0 chrVIII 309969 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.62;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1042,120,0 chrVIII 310032 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=16.13;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1017,114,0 chrVIII 310584 . C T 2998 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.41;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3031,342,0 chrVIII 310647 . A C 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DP=122;Dels=0.00;FS=14.200;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.030;QD=20.94;ReadPosRankSum=1.718;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2588,282,0 chrVIII 310716 . A C 2523 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.41;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2556,297,0 chrVIII 310722 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.367;QD=17.95;ReadPosRankSum=1.706;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2402,276,0 chrVIII 310845 . A G 3109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=135;Dels=0.00;FS=10.426;HaplotypeScore=11.2323;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.264;QD=23.03;ReadPosRankSum=2.340;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3142,357,0 chrVIII 311298 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.05;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2480,285,0 chrVIII 311319 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.22;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2070,240,0 chrVIII 311928 . A G 2648 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.8565;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.06;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2681,315,0 chrVIII 312174 . T G 1756 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.18;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1789,210,0 chrVIII 312465 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.11;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1280,144,0 chrVIII 312723 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1141,132,0 chrVIII 312876 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.20;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1052,120,0 chrVIII 312975 . T A 1618 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.6840;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.29;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1651,189,0 chrVIII 314005 . A G 1122 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.907;QD=17.81;ReadPosRankSum=1.677;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1155,132,0 chrVIII 314230 . G A 396 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:19:48:429,48,0 chrVIII 314465 . C T 267 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.71;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:300,33,0 chrVIII 314622 . G A 507 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.78;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:540,60,0 chrVIII 314881 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.83;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:75:658,75,0 chrVIII 314905 . A G 624 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.80;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:657,72,0 chrVIII 314921 . T G 491 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.93;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:63:524,63,0 chrVIII 314922 . G A 501 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.70;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:63:534,63,0 chrVIII 315358 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=15.28;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1347,156,0 chrVIII 315367 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4923;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=15.90;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1321,153,0 chrVIII 315385 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=15.78;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1343,153,0 chrVIII 315450 . A G 2087 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.07;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2120,243,0 chrVIII 315653 . A G 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.851;QD=19.53;ReadPosRankSum=1.674;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1185,135,0 chrVIII 315789 . T C 2853 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=3.669;HaplotypeScore=9.6160;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.218;QD=21.13;ReadPosRankSum=1.706;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2886,339,0 chrVIII 315879 . T C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.698;QD=21.92;ReadPosRankSum=1.664;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,101:105:99:2335,267,0 chrVIII 315925 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.52;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2432,270,0 chrVIII 315992 . T C 2219 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.97;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2252,261,0 chrVIII 316019 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.485;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.227;QD=21.23;ReadPosRankSum=1.697;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2156,246,0 chrVIII 316099 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.38;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2330,258,0 chrVIII 316134 . A C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=4.124;HaplotypeScore=8.0047;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.328;QD=18.79;ReadPosRankSum=1.707;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2607,297,0 chrVIII 316196 . G C 3290.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.1035;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.56;SB=-1.759e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3290,378,0 chrVIII 316426 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=11.120;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=1.006;QD=16.69;ReadPosRankSum=2.348;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2069,240,0 chrVIII 316440 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.47;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2434,267,0 chrVIII 316447 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=18.31;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2285,261,0 chrVIII 316452 . T C 2225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=126;Dels=0.00;FS=12.877;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.185;QD=17.66;ReadPosRankSum=2.391;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2258,255,0 chrVIII 316661 . G A 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8447;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.359;QD=19.78;ReadPosRankSum=0.000;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2070,225,0 chrVIII 316718 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.979;QD=16.80;ReadPosRankSum=1.657;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1579,189,0 chrVIII 316721 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=100;Dels=0.00;FS=13.421;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.062;QD=17.08;ReadPosRankSum=3.228;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1741,198,0 chrVIII 316823 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.50;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2269,252,0 chrVIII 316916 . A G 2692 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.09;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2725,312,0 chrVIII 317030 . T C 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.569;QD=22.46;ReadPosRankSum=1.709;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3346,390,0 chrVIII 317081 . C T 3120 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.82;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3153,354,0 chrVIII 317296 . A G 2227 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.56;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2260,258,0 chrVIII 317401 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.07;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2421,267,0 chrVIII 317558 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3938;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.90;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1698,192,0 chrVIII 317561 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.54;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1772,201,0 chrVIII 317992 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.52;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1119,126,0 chrVIII 318122 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.44;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1566,183,0 chrVIII 318497 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.80;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2278,249,0 chrVIII 318514 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.56;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1966,228,0 chrVIII 318584 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.92;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1602,180,0 chrVIII 318899 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.12;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2377,261,0 chrVIII 319046 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.15;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2226,246,0 chrVIII 319202 . G A 2054 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.67;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2087,234,0 chrVIII 319400 . C A 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=108;Dels=0.00;FS=3.432;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=0.513;QD=19.30;ReadPosRankSum=1.700;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2117,231,0 chrVIII 319436 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.08;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2017,225,0 chrVIII 319443 . A G 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=108;Dels=0.01;FS=13.942;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.708;QD=16.94;ReadPosRankSum=3.337;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:4,100:107:99:1862,216,0 chrVIII 319609 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.88;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1367,156,0 chrVIII 319904 . G T 1758 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.51;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1791,204,0 chrVIII 320379 . G A 2064 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.50;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2097,231,0 chrVIII 320440 . A C 1875 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1908,219,0 chrVIII 320473 . G A 2009 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.83;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2042,225,0 chrVIII 320692 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3586;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1606,192,0 chrVIII 320927 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.1808;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.49;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2397,273,0 chrVIII 320985 . G C 1815 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3934;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.11;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1848,210,0 chrVIII 321073 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.13;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1320,153,0 chrVIII 321242 . T C 1098 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1131,132,0 chrVIII 321475 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.56;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1184,132,0 chrVIII 321670 . A T 2109 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.20;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2142,240,0 chrVIII 322396 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.80;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2176,240,0 chrVIII 322483 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.5923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2005,228,0 chrVIII 322648 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.81;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1422,156,0 chrVIII 323117 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.81;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:907,102,0 chrVIII 323330 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.76;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1258,141,0 chrVIII 323354 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.76;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1120,126,0 chrVIII 323407 . A C 754 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=15.39;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:93:787,93,0 chrVIII 323792 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.76;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1469,162,0 chrVIII 324023 . T G 1350 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=15.52;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1383,159,0 chrVIII 324036 . T C 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=-0.330;QD=14.82;ReadPosRankSum=1.691;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1278,147,0 chrVIII 324254 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.75;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1317,147,0 chrVIII 324502 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2153,237,0 chrVIII 324622 . A G 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.417;QD=21.20;ReadPosRankSum=1.627;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1432,165,0 chrVIII 324737 . T G 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,192,0 chrVIII 324770 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.60;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1874,207,0 chrVIII 325302 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2593;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.56;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2007,222,0 chrVIII 325586 . T C 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;DP=115;Dels=0.00;FS=12.915;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.531;QD=19.47;ReadPosRankSum=3.380;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2272,264,0 chrVIII 326461 . G C 733 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.29;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:766,90,0 chrVIII 326679 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=12.6898;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.64;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1568,174,0 chrVIII 326825 . G T 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=7.085;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.582;QD=22.94;ReadPosRankSum=0.829;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1111,123,0 chrVIII 327200 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1789,210,0 chrVIII 327272 . C T 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.155;QD=20.42;ReadPosRankSum=-0.178;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1687,186,0 chrVIII 327854 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2020;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.46;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1622,183,0 chrVIII 328055 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.154;QD=18.74;ReadPosRankSum=1.617;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1738,201,0 chrVIII 328271 . C A 1852 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.1697;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.70;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1885,213,0 chrVIII 328366 . T A 2028 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.28;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2061,231,0 chrVIII 328764 . T A 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.006;QD=18.20;ReadPosRankSum=1.501;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1944,222,0 chrVIII 328863 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.63;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1572,177,0 chrVIII 329127 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.64;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1462,168,0 chrVIII 329277 . C T 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.106;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.064;QD=20.07;ReadPosRankSum=-1.523;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1739,179,0 chrVIII 329295 . T C 1859 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.12;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1892,213,0 chrVIII 329544 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.24;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1753,192,0 chrVIII 329634 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.47;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1437,165,0 chrVIII 330081 . A G 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=91;Dels=0.00;FS=2.940;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.311;QD=18.38;ReadPosRankSum=2.369;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1706,198,0 chrVIII 330095 . C T 2206 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.08;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2239,246,0 chrVIII 330112 . A T 2171 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7436;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.88;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2204,252,0 chrVIII 330444 . T C 1718 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.75;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1751,207,0 chrVIII 330629 . T C 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=18.73;ReadPosRankSum=-0.315;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:857,102,0 chrVIII 330954 . A G 1114 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1147,132,0 chrVIII 331227 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.9400;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.52;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1818,210,0 chrVIII 331413 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.01;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1672,189,0 chrVIII 331605 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0866;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.709;QD=15.58;ReadPosRankSum=1.693;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1404,162,0 chrVIII 331629 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=16.87;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1298,141,0 chrVIII 331641 . A G 1161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.214;DP=89;Dels=0.00;FS=13.637;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=-1.913;QD=13.04;ReadPosRankSum=4.336;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:7,82:89:99:1194,138,0 chrVIII 331656 . G C 1275 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.49;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1308,153,0 chrVIII 331847 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.97;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1391,153,0 chrVIII 331861 . T C 1264 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.08;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1297,147,0 chrVIII 331908 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.75;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1122,126,0 chrVIII 331935 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=14.75;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:874,99,0 chrVIII 331943 . T C 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.688;QD=18.28;ReadPosRankSum=2.176;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,43:47:99:892,105,0 chrVIII 331987 . T G 618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1823;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;MQRankSum=1.249;QD=14.05;ReadPosRankSum=1.088;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:75:651,75,0 chrVIII 331991 . A C 656 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.3902;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=14.26;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:81:689,81,0 chrVIII 332305 . A C 1833 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.83;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1866,216,0 chrVIII 332482 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=3.510;HaplotypeScore=7.4204;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.075;QD=19.82;ReadPosRankSum=1.694;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1876,222,0 chrVIII 332581 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.73;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1907,222,0 chrVIII 332599 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=16.2710;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.86;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2051,237,0 chrVIII 333166 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=85;Dels=0.00;FS=5.816;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.735;QD=18.21;ReadPosRankSum=2.917;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:3,81:85:99:1581,180,0 chrVIII 333425 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.90;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1466,174,0 chrVIII 333590 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.93;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2147,246,0 chrVIII 333704 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.41;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,213,0 chrVIII 333830 . C A 1290 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.16;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1323,153,0 chrVIII 333929 . T C 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=88;Dels=0.00;FS=6.592;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.260;QD=18.05;ReadPosRankSum=2.393;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1621,183,0 chrVIII 334091 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.635;QD=19.79;ReadPosRankSum=1.703;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2408,276,0 chrVIII 334346 . A T 2108 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.89;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2141,243,0 chrVIII 335025 . G C 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.83;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1976,228,0 chrVIII 335220 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1972,219,0 chrVIII 335710 . A C 3055 PASS AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.46;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,175:175:99:3088,357,0 chrVIII 335741 . T C 2798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=5.006;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.367;QD=18.41;ReadPosRankSum=1.709;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:2831,321,0 chrVIII 335817 . G T 2433 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.97;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2466,276,0 chrVIII 335859 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.17;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1896,213,0 chrVIII 335894 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.45;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1669,192,0 chrVIII 335964 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.57;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1509,165,0 chrVIII 335985 . C A 1517 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=15.80;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1550,177,0 chrVIII 335990 . A T 1310 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=13.65;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1343,156,0 chrVIII 336067 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0392;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=15.70;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1320,147,0 chrVIII 336166 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=16.16;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1035,120,0 chrVIII 336486 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.51;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1679,192,0 chrVIII 337002 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.07;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1634,180,0 chrVIII 337107 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.98;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2431,282,0 chrVIII 337281 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.09;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1690,189,0 chrVIII 337509 . T C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=97;Dels=0.00;FS=4.416;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.400;QD=17.11;ReadPosRankSum=1.695;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1693,198,0 chrVIII 338239 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1102,126,0 chrVIII 338392 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1254,141,0 chrVIII 338679 . C A 2609 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.74;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2642,300,0 chrVIII 339120 . G A 3314.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3314,366,0 chrVIII 339213 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.81;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2014,237,0 chrVIII 339330 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.13;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1956,222,0 chrVIII 339361 . C T 2028 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.79;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2061,231,0 chrVIII 339601 . A C 2976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=134;Dels=0.00;FS=4.116;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.302;QD=22.21;ReadPosRankSum=1.652;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:2,128:134:99:3009,348,0 chrVIII 339846 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.51;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1255,141,0 chrVIII 339915 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=15.54;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1121,123,0 chrVIII 340031 . T A 864 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=13.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:897,102,0 chrVIII 340175 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1132,126,0 chrVIII 340348 . G T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DP=15;Dels=0.00;FS=10.212;HaplotypeScore=11.5955;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-0.796;QD=2.07;ReadPosRankSum=-1.776;SB=0.527 GT:AD:DP:GQ:PL 0/1:5,10:15:32:61,0,32 chrVIII 340739 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=4.771;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.213;QD=19.98;ReadPosRankSum=1.675;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1252,141,0 chrVIII 340865 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.78;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1556,183,0 chrVIII 341299 . T C 2069 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.70;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2102,246,0 chrVIII 341459 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0134;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.30;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1535,171,0 chrVIII 341482 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=10.12;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:974,117,0 chrVIII 341488 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=9.92;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1084,123,0 chrVIII 341799 . A T 2298 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.08;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2331,264,0 chrVIII 341892 . T C 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.060;QD=17.89;ReadPosRankSum=1.591;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1804,204,0 chrVIII 342157 . G C 1582 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.31;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1615,186,0 chrVIII 342575 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.26;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1856,210,0 chrVIII 342723 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.29;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2362,264,0 chrVIII 342729 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=16.22;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2190,249,0 chrVIII 343035 . A C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.074;QD=19.24;ReadPosRankSum=1.703;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2284,270,0 chrVIII 343392 . G C 1042 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.08;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1075,123,0 chrVIII 343561 . G A 793 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.87;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:826,93,0 chrVIII 344834 . C T 1062 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1095,123,0 chrVIII 344900 . C A 1070 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.83;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1103,126,0 chrVIII 344942 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.77;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1773,198,0 chrVIII 345018 . C A 2200 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.64;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2233,249,0 chrVIII 345071 . C A 2104 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.43;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2137,240,0 chrVIII 345359 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.48;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2101,246,0 chrVIII 345425 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=15.85;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:1951,225,0 chrVIII 345440 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=12.17;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:1384,159,0 chrVIII 345623 . G A 888 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.15;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:921,105,0 chrVIII 345683 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0188;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.75;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1382,156,0 chrVIII 346273 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=14.33;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1065,117,0 chrVIII 346276 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=13.44;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1014,120,0 chrVIII 346284 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.77;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1148,132,0 chrVIII 346300 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=15.43;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1468,162,0 chrVIII 346315 . G T 1312 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=13.25;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1345,159,0 chrVIII 347674 . A G 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.894;QD=21.45;ReadPosRankSum=1.676;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1406,162,0 chrVIII 348037 . G C 1378 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.01;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1411,162,0 chrVIII 348041 . A C 1383 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.87;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1416,159,0 chrVIII 348142 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.85;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1388,153,0 chrVIII 348154 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.02;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1231,141,0 chrVIII 348178 . T C 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.069;QD=17.74;ReadPosRankSum=1.659;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:867,102,0 chrVIII 348326 . A C 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.658;QD=20.01;ReadPosRankSum=1.697;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2034,231,0 chrVIII 348442 . T A 1203 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.71;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1236,141,0 chrVIII 348455 . C A 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.39;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1164,132,0 chrVIII 348461 . G A 1049 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.39;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1082,120,0 chrVIII 348462 . T C 1026 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.03;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1059,123,0 chrVIII 348572 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.84;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1152,129,0 chrVIII 348634 . G T 1363 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.93;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1396,159,0 chrVIII 348790 . A G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.619;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.196;QD=19.82;ReadPosRankSum=1.691;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1718,201,0 chrVIII 348802 . A G 1477 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.69;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1510,177,0 chrVIII 348883 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.64;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1540,174,0 chrVIII 348973 . A C 1794 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.39;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1827,216,0 chrVIII 348982 . A G 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.591;QD=20.50;ReadPosRankSum=1.693;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1837,207,0 chrVIII 349353 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.1897;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.14;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1488,162,0 chrVIII 349406 . A G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=5.039;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.646;QD=21.66;ReadPosRankSum=1.681;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1484,168,0 chrVIII 349489 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1056,120,0 chrVIII 349648 . T G 1282 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.73;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1315,153,0 chrVIII 349745 . C G 1385 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.89;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1418,162,0 chrVIII 349748 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.16;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1407,162,0 chrVIII 349882 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.87;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1494,165,0 chrVIII 349912 . A C 1488 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.84;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1521,177,0 chrVIII 350566 . T C 529 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:66:562,66,0 chrVIII 350971 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1160,132,0 chrVIII 351568 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.01;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1516,171,0 chrVIII 351601 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.04;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1332,159,0 chrVIII 351610 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=16.79;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1393,162,0 chrVIII 351784 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.22;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:93:99:2192,240,0 chrVIII 351889 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.04;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1556,174,0 chrVIII 352138 . G C 1841 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.98;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1874,213,0 chrVIII 352271 . A G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.633;QD=19.97;ReadPosRankSum=2.385;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1551,174,0 chrVIII 352280 . A C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.319;QD=19.60;ReadPosRankSum=1.681;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1346,159,0 chrVIII 352327 . A C 1061 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.29;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1094,126,0 chrVIII 352450 . A G 993 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.73;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1026,120,0 chrVIII 352507 . G T 809 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=11.90;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:93:842,93,0 chrVIII 352512 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=11.46;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:90:778,90,0 chrVIII 352521 . C T 755 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=10.63;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:90:788,90,0 chrVIII 352557 . T G 856 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=13.59;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:889,105,0 chrVIII 352683 . C T 1473 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.66;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1506,174,0 chrVIII 352905 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=20.31;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1800,201,0 chrVIII 352995 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.27;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2220,255,0 chrVIII 353157 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.28;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1459,168,0 chrVIII 353343 . A C 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=111;Dels=0.00;FS=2.647;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.213;QD=15.83;ReadPosRankSum=2.405;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,108:111:99:1790,207,0 chrVIII 353562 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.41;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,228,0 chrVIII 353593 . T C 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.176;QD=19.84;ReadPosRankSum=2.258;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1561,177,0 chrVIII 354035 . T G 2356 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2389,273,0 chrVIII 354125 . T C 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=4.041;HaplotypeScore=4.3394;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.171;QD=16.51;ReadPosRankSum=1.683;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1222,141,0 chrVIII 354485 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.27;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2037,222,0 chrVIII 354573 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.65;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1768,201,0 chrVIII 354672 . T G 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=4.135;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.881;QD=17.67;ReadPosRankSum=1.611;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1058,120,0 chrVIII 354747 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.06;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1919,213,0 chrVIII 355175 . C T 2306 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.38;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2339,258,0 chrVIII 355703 . T G 2194 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4464;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.90;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2227,255,0 chrVIII 355733 . T C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.374;QD=19.90;ReadPosRankSum=1.613;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1764,204,0 chrVIII 355751 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.95;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1928,222,0 chrVIII 356131 . G C 1536 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.34;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1569,183,0 chrVIII 356232 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.85;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2284,255,0 chrVIII 356260 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.99;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1328,156,0 chrVIII 356286 . C T 1091 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=14.17;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1124,123,0 chrVIII 356291 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=11.56;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:877,102,0 chrVIII 357046 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.4785;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.18;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1346,153,0 chrVIII 357700 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1523,171,0 chrVIII 357943 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.71;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1268,141,0 chrVIII 358013 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=5.980;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.177;QD=21.30;ReadPosRankSum=2.912;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1737,201,0 chrVIII 358183 . T C 776 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=18.05;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:93:809,93,0 chrVIII 358234 . A T 748 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.78;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:781,87,0 chrVIII 358252 . A G 786 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.71;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:819,96,0 chrVIII 358374 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.75;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1577,171,0 chrVIII 358476 . T C 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.934;QD=21.51;ReadPosRankSum=2.393;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1883,219,0 chrVIII 358619 . A G 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=4.168;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.922;QD=19.49;ReadPosRankSum=1.659;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:949,111,0 chrVIII 358638 . G C 1048 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.05;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1081,126,0 chrVIII 358677 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.41;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1256,144,0 chrVIII 358703 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.15;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1343,153,0 chrVIII 358745 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.78;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2470,276,0 chrVIII 358974 . T C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.180;QD=21.55;ReadPosRankSum=1.696;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2102,240,0 chrVIII 359105 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.07;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2646,294,0 chrVIII 359160 . G A 2968 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.0088;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=18.55;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3001,333,0 chrVIII 359203 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.57;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3074,348,0 chrVIII 359225 . G T 2821 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.68;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2854,327,0 chrVIII 359240 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.259;QD=18.29;ReadPosRankSum=1.706;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2484,282,0 chrVIII 359401 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.16;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1202,132,0 chrVIII 359540 . T A 1371 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.48;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1404,153,0 chrVIII 359563 . A G 1283 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.59;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1316,150,0 chrVIII 359581 . A G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=6.111;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.217;QD=18.88;ReadPosRankSum=2.917;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1619,186,0 chrVIII 359669 . T G 1731 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.48;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1764,210,0 chrVIII 359915 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.34;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1548,180,0 chrVIII 359945 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=1.572;QD=18.92;ReadPosRankSum=1.679;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1263,150,0 chrVIII 359999 . T A 800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.315;QD=18.18;ReadPosRankSum=1.575;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:93:833,93,0 chrVIII 360002 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.85;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:808,93,0 chrVIII 360080 . C T 926 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.84;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:959,108,0 chrVIII 360186 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2249;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.61;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1530,171,0 chrVIII 360262 . C T 919 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.02;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:952,111,0 chrVIII 360339 . A G 665 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.97;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:698,81,0 chrVIII 360379 . T C 457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.456;QD=16.93;ReadPosRankSum=1.456;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,24:27:54:490,54,0 chrVIII 360489 . G A 823 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.60;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:856,99,0 chrVIII 360510 . T A 728 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=17.76;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:761,84,0 chrVIII 360543 . G A 703 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.00;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:81:736,81,0 chrVIII 360663 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.37;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:737,84,0 chrVIII 360689 . A G 651 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.13;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:684,78,0 chrVIII 360746 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.81;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:964,105,0 chrVIII 360898 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.03;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1442,156,0 chrVIII 360906 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.98;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1504,165,0 chrVIII 361476 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.78;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1296,147,0 chrVIII 361569 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.71;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:923,102,0 chrVIII 361697 . A C 275 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=4.82;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:36:308,36,0 chrVIII 361761 . T C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.817;QD=19.08;ReadPosRankSum=1.144;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1044,117,0 chrVIII 362829 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.81;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1083,120,0 chrVIII 362833 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.00;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1097,120,0 chrVIII 363155 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.400;QD=19.23;ReadPosRankSum=1.626;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1302,147,0 chrVIII 363626 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1970,216,0 chrVIII 364046 . T A 2405 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.86;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2438,267,0 chrVIII 364203 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.61;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2041,243,0 chrVIII 364222 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=9.543;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.049;QD=16.56;ReadPosRankSum=2.391;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2103,243,0 chrVIII 364330 . A T 2096 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.55;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2129,240,0 chrVIII 364427 . C A 1946 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.19;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1979,225,0 chrVIII 364439 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-1.577;QD=18.32;ReadPosRankSum=1.701;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2103,246,0 chrVIII 364600 . C G 2235 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.49;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2268,261,0 chrVIII 364653 . G C 1539 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.00;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1572,180,0 chrVIII 364680 . C A 1278 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.07;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1311,144,0 chrVIII 364692 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.62;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1367,162,0 chrVIII 364723 . T C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=6.7223;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.022;QD=20.62;ReadPosRankSum=1.688;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1662,192,0 chrVIII 364750 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.20;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1300,150,0 chrVIII 364778 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.19;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1452,168,0 chrVIII 364879 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.90;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1998,225,0 chrVIII 364974 . G C 1925 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.68;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1958,219,0 chrVIII 365208 . G A 3271.01 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.05;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3271,366,0 chrVIII 365358 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.36;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2374,285,0 chrVIII 365376 . G A 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=140.9397;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;MQRankSum=1.168;QD=16.53;ReadPosRankSum=2.224;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1686,189,0 chrVIII 365436 . A G 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;DP=72;Dels=0.01;FS=3.294;HaplotypeScore=7.7502;MLEAC=1;MLEAF=0.500;MQ=47.73;MQ0=0;MQRankSum=-1.719;QD=0.88;ReadPosRankSum=-4.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,9:71:72:93,0,72 chrVIII 365442 . G A 594 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.424;HaplotypeScore=6.7039;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=1.684;QD=8.25;ReadPosRankSum=1.684;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:72:627,72,0 chrVIII 365445 . G A 575 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;DP=72;Dels=0.00;FS=2.582;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=1.916;QD=7.99;ReadPosRankSum=2.903;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:52:608,52,0 chrVIII 365772 . A T 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=101;Dels=0.00;FS=8.849;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-1.679;QD=18.80;ReadPosRankSum=3.314;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:4,97:101:99:1932,213,0 chrVIII 365853 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=2.972;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.076;QD=18.49;ReadPosRankSum=2.319;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2141,249,0 chrVIII 365964 . T G 2577 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.67;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2610,309,0 chrVIII 365969 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.49;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2585,294,0 chrVIII 366137 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.43;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2423,282,0 chrVIII 366260 . G C 2557 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.39;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,141:147:99:2590,297,0 chrVIII 366283 . C T 2940 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.42;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2973,330,0 chrVIII 366445 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=15.74;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1371,150,0 chrVIII 366783 . A G 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.108;QD=19.10;ReadPosRankSum=1.675;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1198,138,0 chrVIII 367035 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.74;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1158,129,0 chrVIII 367080 . A G 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=6.929;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.430;QD=19.96;ReadPosRankSum=2.375;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1370,159,0 chrVIII 367236 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=82;Dels=0.00;FS=8.151;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.202;QD=17.09;ReadPosRankSum=2.298;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1434,165,0 chrVIII 367260 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.69;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1360,153,0 chrVIII 367565 . T C 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.646;QD=19.88;ReadPosRankSum=1.689;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1643,189,0 chrVIII 368365 . G A 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=8.394;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.684;QD=19.88;ReadPosRankSum=0.274;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1544,153,0 chrVIII 368538 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.98;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1153,132,0 chrVIII 368547 . A C 1038 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=21.18;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1071,126,0 chrVIII 368559 . C T 965 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.30;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:998,111,0 chrVIII 368601 . A G 945 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.0437;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.11;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:978,117,0 chrVIII 369483 . T A 1947 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.40;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1980,216,0 chrVIII 369871 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.79;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1613,177,0 chrVIII 369898 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.49;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1494,165,0 chrVIII 370564 . A G 522 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:66:555,66,0 chrVIII 370655 . T G 804 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:93:837,93,0 chrVIII 370657 . G A 703 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=14.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:87:736,87,0 chrVIII 370683 . C T 438 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.59;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:54:471,54,0 chrVIII 370697 . T C 201.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.501;QD=4.47;ReadPosRankSum=1.655;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:1,44:45:27:234,27,0 chrVIII 370707 . C T 129.13 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=3.40;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:162,18,0 chrVIII 370842 . G C 1645 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.17;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1678,192,0 chrVIII 370980 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8279;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.16;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2361,258,0 chrVIII 371481 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.30;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1123,129,0 chrVIII 371744 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.73;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:898,102,0 chrVIII 371755 . A G 894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.636;DP=53;Dels=0.00;FS=23.923;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.350;QD=16.87;ReadPosRankSum=3.636;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:5,48:53:99:927,105,0 chrVIII 371833 . A G 668 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=16.29;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:701,84,0 chrVIII 371998 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.97;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1483,165,0 chrVIII 372114 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.11;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2090,231,0 chrVIII 372426 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1899,219,0 chrVIII 372470 . T A 1985 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.8414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2018,225,0 chrVIII 372533 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=19.82;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1995,225,0 chrVIII 372577 . G C 1721 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.12;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1754,204,0 chrVIII 372964 . T C 2075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=118;Dels=0.00;FS=4.449;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=17.58;ReadPosRankSum=1.703;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2108,240,0 chrVIII 373115 . A T 1162 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.14;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1195,135,0 chrVIII 373116 . T G 1103 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=15.11;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1136,132,0 chrVIII 373555 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1753,195,0 chrVIII 373987 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.04;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1569,183,0 chrVIII 374065 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.60;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1265,144,0 chrVIII 374774 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.74;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1382,159,0 chrVIII 374792 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.11;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1008,117,0 chrVIII 374794 . T C 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.502;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=1.052;QD=16.64;ReadPosRankSum=1.670;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:965,114,0 chrVIII 375003 . C G 3086 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.05;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3119,351,0 chrVIII 375097 . C G 2265 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.57;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2298,273,0 chrVIII 375303 . T A 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=7.380;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.689;QD=16.06;ReadPosRankSum=1.695;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1527,171,0 chrVIII 375304 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=16.01;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1538,171,0 chrVIII 375485 . C T 615 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=10.79;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:648,72,0 chrVIII 375520 . A G 488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.235;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.5049;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.494;QD=10.61;ReadPosRankSum=0.529;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:5,41:46:63:521,63,0 chrVIII 375560 . T G 702 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=15.95;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:735,84,0 chrVIII 375686 . A C 1122 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.04;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1155,132,0 chrVIII 375703 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.33;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1206,135,0 chrVIII 375742 . A G 895 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=15.17;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:928,108,0 chrVIII 375825 . T C 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.673;QD=22.26;ReadPosRankSum=2.343;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:1057,123,0 chrVIII 375930 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.25;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1342,153,0 chrVIII 375943 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.15;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1249,147,0 chrVIII 376014 . T C 860 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.55;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:893,105,0 chrVIII 376101 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.24;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1541,174,0 chrVIII 376320 . G C 1003 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=16.72;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1036,117,0 chrVIII 376378 . C T 734 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=14.98;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:767,87,0 chrVIII 376494 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1346,153,0 chrVIII 376829 . C G 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.65;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1507,177,0 chrVIII 377068 . C G 753 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.37;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:90:786,90,0 chrVIII 377086 . G C 724 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.56;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:757,87,0 chrVIII 377259 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.44;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1893,207,0 chrVIII 377268 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=6.251;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.859;QD=18.63;ReadPosRankSum=2.398;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1840,210,0 chrVIII 377349 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=24.52;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1921,216,0 chrVIII 377373 . A G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=8.692;HaplotypeScore=4.4541;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.421;QD=22.91;ReadPosRankSum=1.685;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1728,204,0 chrVIII 377460 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.21;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:966,108,0 chrVIII 377707 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.80;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2222,243,0 chrVIII 377712 . G A 2180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=1.704;QD=17.58;ReadPosRankSum=-0.643;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2213,246,0 chrVIII 377752 . G C 1964 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.36;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1997,231,0 chrVIII 377834 . G C 997 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=16.34;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1030,117,0 chrVIII 377841 . T A 1025 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=16.27;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1058,120,0 chrVIII 377878 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=15.84;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1047,120,0 chrVIII 377956 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0160;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.38;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1622,192,0 chrVIII 378025 . A G 1779 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.93;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1812,207,0 chrVIII 378065 . A G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=1.065;QD=18.73;ReadPosRankSum=2.408;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2281,264,0 chrVIII 378101 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.56;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2123,231,0 chrVIII 378194 . T C 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;MQRankSum=-0.747;QD=13.88;ReadPosRankSum=1.223;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1449,165,0 chrVIII 378228 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=16.81;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1697,192,0 chrVIII 378234 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=15.45;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1516,180,0 chrVIII 378273 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=16.70;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1436,162,0 chrVIII 378570 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.45;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2075,234,0 chrVIII 378579 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.82;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2047,231,0 chrVIII 378618 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.866;QD=19.38;ReadPosRankSum=1.650;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1661,195,0 chrVIII 378903 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.99;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2700,300,0 chrVIII 378942 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.01;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2218,255,0 chrVIII 379236 . G T 2132 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.56;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2165,249,0 chrVIII 379379 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1680,189,0 chrVIII 379514 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=20.0637;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.69;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2475,285,0 chrVIII 379885 . T C 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=5.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.614;QD=14.74;ReadPosRankSum=1.643;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:1757,201,0 chrVIII 380011 . G C 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.29;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1928,225,0 chrVIII 380222 . T C 953 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.33;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:986,114,0 chrVIII 380236 . A G 945 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.90;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:978,111,0 chrVIII 380267 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.21;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1508,165,0 chrVIII 380303 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.76;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1377,156,0 chrVIII 380340 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=18.42;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1783,207,0 chrVIII 380361 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.50;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1713,195,0 chrVIII 380385 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=15.86;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1635,195,0 chrVIII 380484 . T C 1968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.123;QD=21.63;ReadPosRankSum=2.369;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2001,234,0 chrVIII 380530 . A G 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=6.780;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.620;QD=19.20;ReadPosRankSum=1.689;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1588,189,0 chrVIII 380531 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.56;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1678,189,0 chrVIII 380685 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.61;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1466,165,0 chrVIII 380706 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.19;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2106,237,0 chrVIII 380748 . C T 3027 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.59;SB=-1.669e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3060,342,0 chrVIII 380790 . G A 3701.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.99;SB=-1.631e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3701,411,0 chrVIII 381507 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.65;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1212,141,0 chrVIII 381521 . T A 1302 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.03;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1335,150,0 chrVIII 381677 . G A 558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=18.60;ReadPosRankSum=1.016;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,28:30:66:591,66,0 chrVIII 382565 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.75;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1755,204,0 chrVIII 382878 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.74;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2098,240,0 chrVIII 383221 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2004,228,0 chrVIII 385580 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2325,270,0 chrVIII 386603 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.40;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2237,255,0 chrVIII 387439 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.93;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1042,120,0 chrVIII 387780 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.12;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1790,201,0 chrVIII 388619 . C A 2266 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.58;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2299,261,0 chrVIII 388791 . C A 1376 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.66;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1409,162,0 chrVIII 388948 . G T 1251 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=1;QD=19.55;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1284,141,0 chrVIII 388949 . G T 1305 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=1;QD=20.39;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1338,144,0 chrVIII 389014 . T A 1064 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=5.6252;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=17.16;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1097,123,0 chrVIII 389017 . A G 1094 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6252;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;MQRankSum=-1.387;QD=16.83;ReadPosRankSum=2.184;SB=-1.200e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1127,132,0 chrVIII 389023 . A G 1039 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;MQRankSum=-1.787;QD=15.51;ReadPosRankSum=2.376;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1072,123,0 chrVIII 389050 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;MQRankSum=0.384;QD=19.68;ReadPosRankSum=2.110;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:3,71:76:99:1529,177,0 chrVIII 389052 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.51;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1551,177,0 chrVIII 389173 . T C 359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=30;Dels=0.00;FS=43.757;HaplotypeScore=10.8777;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;MQRankSum=-0.601;QD=11.97;ReadPosRankSum=3.131;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:4,25:30:54:392,54,0 chrVIII 389251 . T A 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;DP=42;Dels=0.00;FS=9.132;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=19;MQRankSum=0.932;QD=5.83;ReadPosRankSum=0.783;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:24,18:42:70:275,0,70 chrVIII 389545 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrVIII 389898 . T A 1282 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=17.09;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1315,147,0 chrVIII 389909 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=72;Dels=0.00;FS=12.602;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;MQRankSum=0.930;QD=16.93;ReadPosRankSum=2.903;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1252,141,0 chrVIII 389968 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=16.32;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1159,129,0 chrVIII 389977 . G A 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=0.593;QD=16.05;ReadPosRankSum=0.593;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1205,135,0 chrVIII 390041 . A T 831 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=10.65;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:864,99,0 chrVIII 390124 . G C 1529 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=16.99;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1562,180,0 chrVIII 390561 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.86;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1582,183,0 chrVIII 390900 . C T 1250 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.15;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1283,141,0 chrVIII 391049 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.73;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1419,165,0 chrVIII 391158 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.61;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1290,144,0 chrVIII 391334 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=16.73;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:903,102,0 chrVIII 391342 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=15.98;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:816,96,0 chrVIII 391475 . A T 573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.983;QD=15.49;ReadPosRankSum=1.639;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:69:606,69,0 chrVIII 391559 . G A 428 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.40;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:51:461,51,0 chrVIII 392033 . C T 871 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:904,102,0 chrVIII 392043 . T C 908 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:941,111,0 chrVIII 392078 . G C 414 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=13.35;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:51:447,51,0 chrVIII 392401 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=23.21;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1356,150,0 chrVIII 392524 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.92;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1589,177,0 chrVIII 392676 . T C 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.586;QD=23.10;ReadPosRankSum=1.683;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1696,195,0 chrVIII 393364 . T C 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8779;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.110;QD=18.65;ReadPosRankSum=1.601;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1525,177,0 chrVIII 393734 . T C 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.7203;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.197;QD=18.62;ReadPosRankSum=1.701;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2100,243,0 chrVIII 394283 . C T 894 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.87;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:927,105,0 chrVIII 395269 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.12;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1917,213,0 chrVIII 395596 . A C 2726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=3.337;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.904;QD=19.61;ReadPosRankSum=1.657;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2759,324,0 chrVIII 395607 . G A 2848 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.20;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2881,324,0 chrVIII 395713 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9837;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.97;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1930,219,0 chrVIII 396036 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.20;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1528,168,0 chrVIII 396060 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.33;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1554,174,0 chrVIII 396423 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.88;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1822,207,0 chrVIII 396995 . C T 306 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=8.27;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:39:339,39,0 chrVIII 396997 . A G 309 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=8.35;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:39:342,39,0 chrVIII 397005 . G T 417 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=10.42;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:450,51,0 chrVIII 397427 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.56;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1246,141,0 chrVIII 397787 . A G 2106 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.17;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2139,249,0 chrVIII 398045 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.40;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2173,237,0 chrVIII 398099 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.2719;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.25;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2131,234,0 chrVIII 398112 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.48;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1923,213,0 chrVIII 398207 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9210;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.61;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1447,168,0 chrVIII 398225 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.52;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1458,171,0 chrVIII 398452 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.91;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1282,150,0 chrVIII 398985 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.12;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1009,111,0 chrVIII 399012 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.17;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1269,138,0 chrVIII 399023 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=15.82;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1251,138,0 chrVIII 399104 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.18;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2405,264,0 chrVIII 399204 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=51.4232;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.69;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1059,126,0 chrVIII 399258 . A G 1036 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.19;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1069,123,0 chrVIII 399484 . T G 1578 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.97;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1611,189,0 chrVIII 399628 . A C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.229;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.386;QD=17.21;ReadPosRankSum=1.697;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1754,204,0 chrVIII 399631 . T A 1766 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.84;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1799,198,0 chrVIII 400015 . A G 2124 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.03;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2157,246,0 chrVIII 400069 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.615;QD=22.46;ReadPosRankSum=1.695;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2122,246,0 chrVIII 400446 . A G 2261 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.95;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2294,267,0 chrVIII 400618 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.33;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1903,219,0 chrVIII 400642 . A T 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=5.788;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.286;QD=20.93;ReadPosRankSum=1.656;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1938,219,0 chrVIII 401172 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.46;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1342,150,0 chrVIII 401325 . A G 1882 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.15;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1915,219,0 chrVIII 401408 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.29;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1918,222,0 chrVIII 401513 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.68;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1548,171,0 chrVIII 401862 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=10.9168;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.02;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:986,108,0 chrVIII 402170 . T C 649 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.38;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:682,78,0 chrVIII 402478 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.02;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:958,111,0 chrVIII 402502 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.46;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:971,111,0 chrVIII 402503 . A T 1002 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.58;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1035,114,0 chrVIII 402653 . T A 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.667;QD=19.32;ReadPosRankSum=0.817;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1057,120,0 chrVIII 402986 . T C 1131 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.85;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1164,138,0 chrVIII 403137 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.92;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1743,189,0 chrVIII 403215 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=2.755;HaplotypeScore=11.7895;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.256;QD=18.24;ReadPosRankSum=2.330;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1529,174,0 chrVIII 404246 . C T 758 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:791,93,0 chrVIII 404459 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:987,114,0 chrVIII 406060 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1689,189,0 chrVIII 406416 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.44;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1510,177,0 chrVIII 406498 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.30;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1268,147,0 chrVIII 406597 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.41;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1810,207,0 chrVIII 406625 . G T 1718 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.45;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1751,195,0 chrVIII 406670 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.76;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1440,162,0 chrVIII 406734 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.54;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1694,186,0 chrVIII 406749 . C G 1630 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.72;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1663,189,0 chrVIII 407076 . T C 1081 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.40;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1114,129,0 chrVIII 407300 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1146,132,0 chrVIII 407637 . G T 1868 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.78;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1901,213,0 chrVIII 408671 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.46;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1253,144,0 chrVIII 408824 . C T 1285 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=16.27;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1318,144,0 chrVIII 409404 . C G 1185 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.36;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1218,141,0 chrVIII 409664 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.07;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1262,144,0 chrVIII 411751 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.15;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1282,147,0 chrVIII 411948 . A T 1338 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.39;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1371,150,0 chrVIII 411961 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.30;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1474,162,0 chrVIII 412048 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.67;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1521,171,0 chrVIII 412076 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.32;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1618,180,0 chrVIII 415006 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1785,204,0 chrVIII 415310 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.94;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1687,195,0 chrVIII 415374 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.45;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1492,168,0 chrVIII 415740 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:839,93,0 chrVIII 416196 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.25;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1707,186,0 chrVIII 416592 . T C 3446.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.27;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3446,402,0 chrVIII 416601 . G C 3354.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.83;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3354,384,0 chrVIII 416784 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.41;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2071,243,0 chrVIII 416874 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.39;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1990,219,0 chrVIII 417002 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.886;DP=89;Dels=0.00;FS=10.025;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.093;QD=13.54;ReadPosRankSum=4.241;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:7,81:89:99:1238,141,0 chrVIII 417042 . T C 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.732;QD=14.89;ReadPosRankSum=1.689;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1224,144,0 chrVIII 417054 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.03;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1225,138,0 chrVIII 417114 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.81;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1159,132,0 chrVIII 417117 . A G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.522;QD=17.14;ReadPosRankSum=1.677;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1113,129,0 chrVIII 417224 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.25;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1244,144,0 chrVIII 417310 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.50;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1188,141,0 chrVIII 417518 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.41;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2093,228,0 chrVIII 417602 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9730;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.96;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1490,171,0 chrVIII 418376 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.71;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1110,126,0 chrVIII 418718 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.11;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1390,159,0 chrVIII 418913 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4049;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=16.10;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1305,150,0 chrVIII 419187 . T G 1160 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.71;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1193,138,0 chrVIII 419449 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.89;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:999,114,0 chrVIII 419557 . T C 800 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:833,96,0 chrVIII 419617 . G A 840 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.26;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:873,99,0 chrVIII 419882 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1002,114,0 chrVIII 419975 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1133,129,0 chrVIII 420093 . T A 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.274;QD=20.01;ReadPosRankSum=1.641;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1554,177,0 chrVIII 420248 . A T 1621 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.84;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1654,186,0 chrVIII 420455 . T G 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=110;Dels=0.00;FS=8.560;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.282;QD=20.55;ReadPosRankSum=1.118;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,107:110:99:2293,273,0 chrVIII 420484 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.325;QD=20.45;ReadPosRankSum=1.691;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1771,201,0 chrVIII 421000 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.99;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1452,171,0 chrVIII 421075 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.46;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1528,177,0 chrVIII 421276 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.17;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1707,192,0 chrVIII 421312 . A G 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.01;FS=4.771;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.529;QD=18.30;ReadPosRankSum=1.636;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1369,159,0 chrVIII 421507 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.67;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1115,129,0 chrVIII 421693 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.33;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2017,234,0 chrVIII 421840 . G C 2031 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.52;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2064,240,0 chrVIII 422218 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.56;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1559,180,0 chrVIII 422434 . A G 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=4.455;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.209;QD=21.74;ReadPosRankSum=1.536;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1207,138,0 chrVIII 422538 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.14;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:711,84,0 chrVIII 422992 . A G 1063 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=16.87;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1096,129,0 chrVIII 423389 . T C 710 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.21;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:743,87,0 chrVIII 423780 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.0617;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.81;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1219,144,0 chrVIII 423936 . C T 2368 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.14;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2401,264,0 chrVIII 424419 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6485;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.60;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1268,150,0 chrVIII 425300 . G T 1971 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.29;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2004,222,0 chrVIII 425301 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.30;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2005,222,0 chrVIII 425534 . T C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.247;QD=20.60;ReadPosRankSum=1.594;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1063,123,0 chrVIII 426350 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1477,168,0 chrVIII 426665 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=13.2981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=12.60;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1180,135,0 chrVIII 427439 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.03;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1547,180,0 chrVIII 427901 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.15;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1027,111,0 chrVIII 428018 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.78;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:922,105,0 chrVIII 428044 . T C 1113 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.95;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1146,135,0 chrVIII 428193 . G C 1866 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.21;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1899,216,0 chrVIII 428194 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=22.76;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1922,222,0 chrVIII 428221 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.52;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:88:99:1575,183,0 chrVIII 428241 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.99;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1706,195,0 chrVIII 428297 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.78;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1742,204,0 chrVIII 428574 . A C 2303 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.52;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2336,267,0 chrVIII 428607 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=16.37;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2129,234,0 chrVIII 428622 . A T 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=0.145;QD=14.83;ReadPosRankSum=1.706;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:1976,222,0 chrVIII 428623 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=14.32;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:1895,219,0 chrVIII 428738 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.83;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2074,228,0 chrVIII 428819 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.87;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1297,147,0 chrVIII 429032 . A T 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.732;QD=16.87;ReadPosRankSum=1.698;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1771,198,0 chrVIII 429261 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.88;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1862,210,0 chrVIII 429278 . G C 1707 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.55;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1740,201,0 chrVIII 429323 . C T 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=13.6981;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.411;QD=20.56;ReadPosRankSum=1.375;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2068,231,0 chrVIII 429526 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.89;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1107,123,0 chrVIII 429603 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.18;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1324,144,0 chrVIII 430583 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.89;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1697,198,0 chrVIII 431807 . G T 1580 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.37;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1613,183,0 chrVIII 431870 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.36;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2151,237,0 chrVIII 431945 . A G 2336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.383;QD=17.70;ReadPosRankSum=1.653;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2369,270,0 chrVIII 432002 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.71;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1787,195,0 chrVIII 432212 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.78;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1378,156,0 chrVIII 432281 . A G 1613 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.38;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1646,186,0 chrVIII 432335 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.78;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1928,219,0 chrVIII 432386 . T C 1964 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.67;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1997,231,0 chrVIII 432407 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.231;QD=21.24;ReadPosRankSum=1.617;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1945,225,0 chrVIII 432641 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.52;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1490,171,0 chrVIII 432695 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.66;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1547,174,0 chrVIII 432761 . C A 1178 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.04;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1211,135,0 chrVIII 432782 . A G 993 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.86;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1026,120,0 chrVIII 432803 . T C 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=4.232;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.686;QD=20.78;ReadPosRankSum=1.667;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1155,129,0 chrVIII 433028 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.55;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1086,126,0 chrVIII 433037 . T C 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.357;QD=15.76;ReadPosRankSum=1.677;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1026,120,0 chrVIII 433067 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.00;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1493,162,0 chrVIII 433148 . G C 1318 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.56;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1351,156,0 chrVIII 433331 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.73;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1567,174,0 chrVIII 433630 . A G 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=90;Dels=0.00;FS=2.704;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-2.395;QD=21.94;ReadPosRankSum=2.340;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2008,228,0 chrVIII 433703 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.92;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1895,216,0 chrVIII 433847 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1273,141,0 chrVIII 434057 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.86;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1463,171,0 chrVIII 434134 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.56;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1585,180,0 chrVIII 434462 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1071,126,0 chrVIII 434504 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1260,144,0 chrVIII 434957 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.95;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1800,198,0 chrVIII 435146 . T C 1592 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.42;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1625,189,0 chrVIII 435329 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.66;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1582,183,0 chrVIII 435482 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.49;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2418,279,0 chrVIII 435713 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.69;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1342,147,0 chrVIII 435764 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.44;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1490,165,0 chrVIII 436433 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=70;Dels=0.00;FS=3.399;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.990;QD=20.03;ReadPosRankSum=1.633;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1435,149,0 chrVIII 436457 . A G 1381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=67;Dels=0.00;FS=6.220;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.773;QD=20.61;ReadPosRankSum=2.895;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1414,159,0 chrVIII 436613 . T C 1497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.465;QD=18.26;ReadPosRankSum=0.507;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1530,177,0 chrVIII 436654 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.36;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1595,186,0 chrVIII 436695 . G T 1707 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.57;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1740,195,0 chrVIII 436810 . T C 885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=12.127;HaplotypeScore=4.4169;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.832;QD=16.09;ReadPosRankSum=2.360;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:918,105,0 chrVIII 436829 . T C 592 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=14.10;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:625,75,0 chrVIII 436939 . G T 669 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.23;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:702,78,0 chrVIII 437014 . G T 1055 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.75;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1088,123,0 chrVIII 437680 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.08;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2241,252,0 chrVIII 437704 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.05;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1690,189,0 chrVIII 438040 . A G 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.628;QD=17.75;ReadPosRankSum=2.362;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1524,177,0 chrVIII 438220 . T A 1302 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.43;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1335,150,0 chrVIII 438265 . A G 976 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1009,123,0 chrVIII 438307 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1277,141,0 chrVIII 438697 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.27;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1918,210,0 chrVIII 439062 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.86;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2079,228,0 chrVIII 439087 . T A 2004 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.04;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2037,225,0 chrVIII 439215 . A C 1364 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.77;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1397,162,0 chrVIII 439617 . G T 1200 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.53;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1233,141,0 chrVIII 439647 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.89;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1266,144,0 chrVIII 439686 . A G 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=5.378;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.577;QD=16.26;ReadPosRankSum=1.682;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1155,132,0 chrVIII 439692 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=14.11;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1035,123,0 chrVIII 439710 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.14;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1233,138,0 chrVIII 440234 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.20;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1473,168,0 chrVIII 440255 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.46;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1694,198,0 chrVIII 440297 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.47;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1954,213,0 chrVIII 440682 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4283;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.13;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2083,234,0 chrVIII 441789 . A T 2058 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.12;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2091,231,0 chrVIII 441833 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.97;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1585,180,0 chrVIII 442149 . T C 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=56.8538;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.062;QD=18.37;ReadPosRankSum=1.621;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1172,135,0 chrVIII 442603 . T C 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.289;QD=19.69;ReadPosRankSum=0.449;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2160,255,0 chrVIII 442747 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1881,222,0 chrVIII 443428 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.09;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1491,171,0 chrVIII 443586 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.27;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1249,141,0 chrVIII 443612 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.38;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,138,0 chrVIII 443620 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.11;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1032,117,0 chrVIII 443899 . C G 1427 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.62;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1460,171,0 chrVIII 444367 . A G 1303 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.02;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1336,153,0 chrVIII 444619 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=103;Dels=0.00;FS=2.905;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.350;QD=21.87;ReadPosRankSum=2.402;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2286,261,0 chrVIII 444856 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.96;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2109,237,0 chrVIII 444916 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.27;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2840,312,0 chrVIII 445169 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.12;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2137,246,0 chrVIII 445303 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=15.00;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1338,153,0 chrVIII 445550 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=33.4721;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.27;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:823,93,0 chrVIII 445623 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.80;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1192,135,0 chrVIII 445651 . G T 1558 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=17.91;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1591,180,0 chrVIII 445735 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1951,219,0 chrVIII 445905 . A C 2006 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.06;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2039,231,0 chrVIII 446336 . T G 1599 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.32;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1632,195,0 chrVIII 446482 . T G 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.565;QD=17.41;ReadPosRankSum=0.063;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1478,171,0 chrVIII 446738 . A T 1736 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.92;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1769,195,0 chrVIII 447395 . A G 2718 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.03;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2751,318,0 chrVIII 447419 . T C 2969 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.84;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3002,339,0 chrVIII 447550 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.91;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2203,249,0 chrVIII 447838 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.30;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1795,201,0 chrVIII 447899 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.65;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1427,165,0 chrVIII 447979 . G A 2711 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.5460;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.08;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2744,306,0 chrVIII 448829 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.03;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1315,150,0 chrVIII 448835 . C T 1285 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.07;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1318,144,0 chrVIII 448853 . A G 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=64;Dels=0.00;FS=2.766;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.725;QD=18.22;ReadPosRankSum=2.333;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1199,141,0 chrVIII 448924 . T G 1340 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.62;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1373,159,0 chrVIII 448955 . A G 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.085;QD=20.15;ReadPosRankSum=1.675;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1262,147,0 chrVIII 448997 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.85;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1343,147,0 chrVIII 449102 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.61;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1484,171,0 chrVIII 449277 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.87;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1515,174,0 chrVIII 449402 . T G 1079 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.27;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1112,129,0 chrVIII 449583 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.63;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1373,162,0 chrVIII 449897 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.02;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1288,141,0 chrVIII 449939 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.19;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1305,150,0 chrVIII 449957 . A G 1395 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.11;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1428,162,0 chrVIII 450131 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.22;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1788,210,0 chrVIII 450218 . A C 1362 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.46;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1395,162,0 chrVIII 450239 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.59;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1335,150,0 chrVIII 450254 . T C 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-1.386;QD=15.89;ReadPosRankSum=1.689;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1304,153,0 chrVIII 450359 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.40;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1760,195,0 chrVIII 450572 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.161;QD=20.65;ReadPosRankSum=2.379;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1458,168,0 chrVIII 450770 . A G 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.02;FS=3.579;HaplotypeScore=6.0611;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.274;QD=19.21;ReadPosRankSum=1.672;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1147,132,0 chrVIII 450839 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=72.4022;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-1.599;QD=0.28;ReadPosRankSum=1.688;SB=-8.278e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:6:53,6,0 chrVIII 450840 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=70.9484;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=0.30;SB=-8.318e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:6:54,6,0 chrVIII 451172 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.40;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1286,147,0 chrVIII 452163 . A G 1755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1155;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.164;QD=18.28;ReadPosRankSum=1.696;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1788,207,0 chrVIII 452436 . T C 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.7194;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=2;MQRankSum=1.122;QD=18.15;ReadPosRankSum=2.898;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:5,105:110:99:2030,216,0 chrVIII 452903 . C T 526 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=8.35;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:63:559,63,0 chrVIII 452923 . C A 756 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=10.50;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:87:789,87,0 chrVIII 452955 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.8387;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=13.37;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1410,165,0 chrVIII 453105 . T C 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.433;QD=21.54;ReadPosRankSum=1.701;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2446,282,0 chrVIII 453234 . T G 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.772;QD=18.20;ReadPosRankSum=0.223;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1871,222,0 chrVIII 453261 . A G 1960 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7779;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.98;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1993,231,0 chrVIII 453472 . A G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.563;QD=10.82;ReadPosRankSum=1.689;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:899,105,0 chrVIII 453526 . A C 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=74;Dels=0.00;FS=2.987;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.428;QD=17.95;ReadPosRankSum=2.347;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1361,156,0 chrVIII 453557 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=92;Dels=0.00;FS=2.754;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.026;QD=18.58;ReadPosRankSum=2.395;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,88:92:99:1742,201,0 chrVIII 453608 . A T 1777 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.11;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1810,198,0 chrVIII 453668 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=12.1583;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.57;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1351,147,0 chrVIII 453738 . A G 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=3.168;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.619;QD=19.09;ReadPosRankSum=1.670;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1121,126,0 chrVIII 453771 . A G 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.423;QD=16.93;ReadPosRankSum=1.670;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:981,117,0 chrVIII 453897 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.71;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1492,171,0 chrVIII 453908 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.12;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1524,168,0 chrVIII 454120 . T C 1110 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.34;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1143,129,0 chrVIII 454160 . T C 809 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.51;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:842,99,0 chrVIII 454213 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.02;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1336,153,0 chrVIII 454283 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.31;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1076,123,0 chrVIII 454385 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.9791;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.21;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1832,207,0 chrVIII 454423 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.5049;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.92;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1641,186,0 chrVIII 454720 . T C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.917;QD=17.33;ReadPosRankSum=1.681;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1229,138,0 chrVIII 454723 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.00;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1257,138,0 chrVIII 454745 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=15.97;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1087,123,0 chrVIII 455012 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=4.080;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.334;QD=20.22;ReadPosRankSum=1.653;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1792,207,0 chrVIII 455215 . A G 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=6.084;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.025;QD=21.84;ReadPosRankSum=1.682;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1562,180,0 chrVIII 455651 . T C 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.412;QD=20.76;ReadPosRankSum=1.691;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1777,201,0 chrVIII 455744 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.26;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1096,120,0 chrVIII 455862 . A G 644 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=14.31;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:78:677,78,0 chrVIII 456019 . G C 1060 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1093,123,0 chrVIII 456328 . G T 1306 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1339,147,0 chrVIII 456499 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.74;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2169,249,0 chrVIII 456866 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.09;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1293,147,0 chrVIII 456889 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.59;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1458,159,0 chrVIII 456899 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=16.49;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1303,150,0 chrVIII 456941 . A G 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=55;Dels=0.00;FS=2.499;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.389;QD=14.05;ReadPosRankSum=2.872;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:3,52:55:93:806,93,0 chrVIII 457019 . G C 1207 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.35;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1240,144,0 chrVIII 457190 . T C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4001;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.706;QD=23.15;ReadPosRankSum=1.668;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1283,147,0 chrVIII 457249 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.27;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1703,186,0 chrVIII 457364 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.67;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1252,147,0 chrVIII 457544 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.56;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1982,225,0 chrVIII 457546 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.736;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.033;QD=18.25;ReadPosRankSum=1.699;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1931,222,0 chrVIII 457565 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.80;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1797,201,0 chrVIII 457580 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=15.50;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1816,204,0 chrVIII 457673 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.76;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2424,270,0 chrVIII 457736 . A G 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.627;QD=17.57;ReadPosRankSum=1.622;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1685,198,0 chrVIII 458022 . A C 113.13 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=76.4497;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=1.35;SB=-6.401e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:18:146,18,0 chrVIII 458025 . A G 1333 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=70.3991;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=15.50;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1366,159,0 chrVIII 458041 . C A 1498 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=15.94;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1531,168,0 chrVIII 458084 . T A 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=4.379;HaplotypeScore=5.3479;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.047;QD=18.45;ReadPosRankSum=1.685;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1417,159,0 chrVIII 458130 . T A 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=82;Dels=0.00;FS=4.367;HaplotypeScore=12.6800;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.760;QD=16.54;ReadPosRankSum=1.690;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1389,153,0 chrVIII 458277 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1616,186,0 chrVIII 458341 . C G 1612 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.49;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1645,195,0 chrVIII 458390 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.85;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1601,183,0 chrVIII 458409 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=18.61;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1615,180,0 chrVIII 458420 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.18;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1451,168,0 chrVIII 458482 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.25;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1438,156,0 chrVIII 458489 . G T 1353 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=16.11;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1386,159,0 chrVIII 458616 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.60;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2052,237,0 chrVIII 458670 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.93;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1945,219,0 chrVIII 458896 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.68;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1067,123,0 chrVIII 458916 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.61;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1354,153,0 chrVIII 458966 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.06;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1653,186,0 chrVIII 459010 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.57;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2132,234,0 chrVIII 459529 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.31;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1827,201,0 chrVIII 459589 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.82;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1969,222,0 chrVIII 459766 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=90;Dels=0.00;FS=3.024;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.490;QD=15.53;ReadPosRankSum=2.282;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1431,165,0 chrVIII 459778 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.63;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1761,198,0 chrVIII 460285 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.215;QD=19.10;ReadPosRankSum=1.706;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2592,300,0 chrVIII 460444 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-1.055;QD=19.59;ReadPosRankSum=1.692;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1737,201,0 chrVIII 460606 . T C 2535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.979;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.155;QD=21.12;ReadPosRankSum=1.703;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2568,303,0 chrVIII 460708 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.36;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1934,213,0 chrVIII 460795 . C G 1008 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.08;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1041,120,0 chrVIII 460867 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.15;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1767,201,0 chrVIII 461035 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=19.63;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2016,237,0 chrVIII 461338 . A G 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=10.4144;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.228;QD=19.95;ReadPosRankSum=1.669;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2228,252,0 chrVIII 461509 . T C 482 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=12.05;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:60:515,60,0 chrVIII 461593 . T A 1065 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.31;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1098,123,0 chrVIII 461709 . C A 2066 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.96;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2099,231,0 chrVIII 462222 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.40;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1849,213,0 chrVIII 462297 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.78;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1384,159,0 chrVIII 462419 . C T 4029.01 PASS AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=9.4546;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.21;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,190:190:99:4029,456,0 chrVIII 462588 . A G 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=98;Dels=0.00;FS=6.675;HaplotypeScore=11.3789;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.695;QD=21.98;ReadPosRankSum=1.546;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:1,92:98:99:2187,252,0 chrVIII 462676 . G T 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.44;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,177,0 chrVIII 462717 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1798,207,0 chrVIII 462825 . T G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=135;Dels=0.00;FS=6.527;HaplotypeScore=14.9483;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.599;QD=19.50;ReadPosRankSum=2.413;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:2,132:135:99:2666,309,0 chrVIII 463320 . A G 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.374;QD=18.53;ReadPosRankSum=1.653;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1645,189,0 chrVIII 463432 . A G 1091 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.89;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1124,132,0 chrVIII 463473 . T A 1214 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.90;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1247,141,0 chrVIII 463665 . G C 1024 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.90;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1057,120,0 chrVIII 463767 . T G 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.762;QD=17.40;ReadPosRankSum=1.663;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:903,102,0 chrVIII 463786 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.5550;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.60;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1125,123,0 chrVIII 464017 . C T 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;DP=71;Dels=0.00;FS=9.482;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.683;QD=23.55;ReadPosRankSum=0.708;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1705,189,0 chrVIII 464071 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.10;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1580,174,0 chrVIII 464132 . T A 1582 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.28;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1615,183,0 chrVIII 464156 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.22;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2006,234,0 chrVIII 464198 . A G 2178 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.94;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2211,261,0 chrVIII 464525 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=22.7576;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=16.57;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1359,153,0 chrVIII 464561 . C A 620 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=8.99;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:72:653,72,0 chrVIII 464600 . T G 1187 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=16.04;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1220,141,0 chrVIII 464624 . G C 1291 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.68;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1324,156,0 chrVIII 464647 . C T 851 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=16.69;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:884,99,0 chrVIII 464718 . A G 558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.321;QD=20.67;ReadPosRankSum=1.605;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:66:591,66,0 chrVIII 464839 . G C 459 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=12.41;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:54:492,54,0 chrVIII 464855 . G A 980 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=15.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1013,111,0 chrVIII 464925 . A T 570 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.040;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;MQRankSum=0.347;QD=18.39;ReadPosRankSum=1.617;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:69:603,69,0 chrVIII 465090 . A T 520 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.57;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:553,60,0 chrVIII 465092 . A G 489 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.46;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:60:522,60,0 chrVIII 465674 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:72:631,72,0 chrVIII 465684 . G A 589 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.32;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:69:622,69,0 chrVIII 465708 . T A 658 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:75:691,75,0 chrVIII 465769 . C T 629 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9581;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=13.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:78:662,78,0 chrVIII 465784 . G A 680 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:81:713,81,0 chrVIII 465841 . T C 705 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:33:87:738,87,0 chrVIII 465884 . A G 1363 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1396,168,0 chrVIII 465996 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.26;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1689,192,0 chrVIII 466004 . C A 1779 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1812,204,0 chrVIII 466143 . A C 1018 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.62;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1051,123,0 chrVIII 466181 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=16.71;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1002,108,0 chrVIII 466187 . T C 886 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=15.02;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:919,108,0 chrVIII 466260 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.89;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2001,225,0 chrVIII 466545 . A C 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=16.6047;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.082;QD=16.82;ReadPosRankSum=1.622;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1126,129,0 chrVIII 466568 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=20.40;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1522,174,0 chrVIII 466610 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=15.08;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1375,156,0 chrVIII 466641 . C A 1241 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=12.17;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1274,144,0 chrVIII 466650 . C A 1163 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=0;QD=10.97;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1196,138,0 chrVIII 466657 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;QD=9.72;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1044,123,0 chrVIII 466663 . G C 948 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=8.39;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:981,120,0 chrVIII 466679 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=0;QD=10.20;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1135,132,0 chrVIII 466717 . C G 1271 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=10.77;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1304,159,0 chrVIII 466720 . A T 1275 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=10.28;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1308,150,0 chrVIII 466727 . C T 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=9.39;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1150,135,0 chrVIII 466750 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=95.6843;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;MQRankSum=-1.732;QD=12.61;ReadPosRankSum=1.701;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1433,168,0 chrVIII 466759 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=13.37;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1464,162,0 chrVIII 466762 . A G 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.87;MQ0=0;MQRankSum=-0.033;QD=12.11;ReadPosRankSum=1.699;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1292,153,0 chrVIII 466927 . T C 1067 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=15.46;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1100,129,0 chrVIII 466929 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=14.83;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1071,126,0 chrVIII 466953 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=15.76;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1089,120,0 chrVIII 466959 . T C 933 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=14.35;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:966,111,0 chrVIII 468239 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.62;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:870,99,0 chrVIII 468365 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.91;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1128,126,0 chrVIII 468422 . T C 1211 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.29;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1244,147,0 chrVIII 468473 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.34;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1111,129,0 chrVIII 468677 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.18;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1011,114,0 chrVIII 468680 . A T 1006 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.73;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1039,117,0 chrVIII 468734 . T G 850 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.35;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:883,102,0 chrVIII 468761 . T C 1184 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.93;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1217,138,0 chrVIII 468936 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.34;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1233,138,0 chrVIII 468962 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.75;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1077,126,0 chrVIII 469259 . T C 811 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:844,99,0 chrVIII 469438 . C G 1302 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=7.4789;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.43;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1335,150,0 chrVIII 469510 . T A 1241 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.8866;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.34;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1274,144,0 chrVIII 469661 . A G 594 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.80;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:627,72,0 chrVIII 470052 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.82;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1255,144,0 chrVIII 470250 . T C 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6090;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.661;QD=19.71;ReadPosRankSum=1.696;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1945,225,0 chrVIII 470856 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.91;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1896,213,0 chrVIII 470890 . C T 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2933;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.053;QD=21.71;ReadPosRankSum=0.917;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2247,252,0 chrVIII 471244 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.340;DP=118;Dels=0.00;FS=18.880;HaplotypeScore=6.8270;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.230;QD=18.88;ReadPosRankSum=4.295;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:7,111:118:99:2261,261,0 chrVIII 471466 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.13;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2009,225,0 chrVIII 472441 . A T 1313 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.01;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1346,162,0 chrVIII 472879 . A G 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=2.827;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.663;QD=20.16;ReadPosRankSum=2.336;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:99:900,108,0 chrVIII 473884 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.04;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1927,222,0 chrVIII 474166 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1158,126,0 chrVIII 474210 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:971,111,0 chrVIII 474449 . C G 1123 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.60;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1156,132,0 chrVIII 474485 . C G 965 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:998,117,0 chrVIII 474521 . T A 502 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.93;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:60:535,60,0 chrVIII 474566 . C T 331 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.47;SB=-8.000e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:42:364,42,0 chrVIII 475167 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8719;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.37;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1117,129,0 chrVIII 475438 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.65;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2090,234,0 chrVIII 475984 . A G 1017 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1050,120,0 chrVIII 476842 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.13;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1215,138,0 chrVIII 476968 . A C 1462 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.74;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1495,177,0 chrVIII 477112 . T G 1054 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.67;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1087,123,0 chrVIII 477127 . A T 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=5.8350;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.000;QD=20.26;ReadPosRankSum=1.613;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1208,135,0 chrVIII 477370 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.39;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:746,84,0 chrVIII 477509 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.11;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1128,126,0 chrVIII 477510 . A G 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.357;QD=16.64;ReadPosRankSum=1.677;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1098,123,0 chrVIII 477793 . C A 1348 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.06;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1381,156,0 chrVIII 478006 . C T 1032 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.85;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1065,120,0 chrVIII 478429 . A T 1224 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.86;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1257,138,0 chrVIII 478552 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.07;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:956,114,0 chrVIII 478587 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.18;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1163,129,0 chrVIII 478714 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=17.30;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1365,156,0 chrVIII 478873 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.89;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1034,117,0 chrVIII 478875 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.71;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:987,108,0 chrVIII 478978 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.33;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1142,129,0 chrVIII 479001 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.19;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1047,117,0 chrVIII 479113 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.61;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1280,147,0 chrVIII 479128 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.94;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1083,126,0 chrVIII 479643 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.98;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:842,96,0 chrVIII 479728 . G A 1070 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.98;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1103,123,0 chrVIII 479932 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1323,150,0 chrVIII 480214 . T C 1853 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7836;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.30;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1886,222,0 chrVIII 480301 . T G 1607 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.26;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1640,189,0 chrVIII 480863 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.93;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2482,297,0 chrVIII 480916 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.62;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2227,249,0 chrVIII 480979 . A G 2251 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.85;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2284,255,0 chrVIII 481190 . G T 2806 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.92;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2839,321,0 chrVIII 481335 . T C 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=4.150;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.433;QD=18.42;ReadPosRankSum=1.666;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1949,225,0 chrVIII 481403 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.57;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1983,222,0 chrVIII 481494 . G C 2580 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.48;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2613,303,0 chrVIII 481687 . C T 1116 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=14.49;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1149,129,0 chrVIII 481690 . C A 1149 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=14.54;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1182,129,0 chrVIII 481967 . C A 2009 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.50;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2042,231,0 chrVIII 481994 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=6.087;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.035;QD=19.53;ReadPosRankSum=2.873;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1732,198,0 chrVIII 482049 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.93;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1985,219,0 chrVIII 482404 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.34;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:2006,219,0 chrVIII 482614 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3297;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1838,219,0 chrVIII 482671 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.7186;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.43;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1568,183,0 chrVIII 482776 . A G 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=125;Dels=0.00;FS=4.994;HaplotypeScore=12.0197;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.328;QD=19.34;ReadPosRankSum=1.646;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,119:125:99:2450,279,0 chrVIII 482818 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.37;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2762,303,0 chrVIII 482830 . A G 2286 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.58;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2319,273,0 chrVIII 483130 . A G 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.346;QD=18.77;ReadPosRankSum=1.543;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2116,243,0 chrVIII 483295 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=2.911;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.603;QD=18.54;ReadPosRankSum=2.376;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1275,144,0 chrVIII 483396 . A C 1228 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.49;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1261,144,0 chrVIII 483435 . T C 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.085;QD=21.08;ReadPosRankSum=1.675;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1319,153,0 chrVIII 483472 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1223,144,0 chrVIII 483796 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=2.971;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.002;QD=18.56;ReadPosRankSum=2.377;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1926,219,0 chrVIII 484007 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.76;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2209,246,0 chrVIII 484023 . G C 2405 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7863;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.88;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2438,288,0 chrVIII 484057 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.82;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2344,264,0 chrVIII 484090 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7329;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.21;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1490,174,0 chrVIII 484159 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.94;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1778,204,0 chrVIII 484312 . A T 2312 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6653;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.43;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2345,267,0 chrVIII 484833 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.77;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2227,255,0 chrVIII 485402 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.38;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2254,255,0 chrVIII 485522 . T C 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.105;QD=21.62;ReadPosRankSum=1.702;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2519,288,0 chrVIII 485700 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.66;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1809,204,0 chrVIII 485969 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.3382;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.03;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1976,222,0 chrVIII 485972 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.08;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1846,216,0 chrVIII 486077 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.996;QD=21.35;ReadPosRankSum=0.260;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1741,201,0 chrVIII 486425 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.309;QD=19.59;ReadPosRankSum=1.694;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1796,204,0 chrVIII 486440 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.50;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1866,210,0 chrVIII 487008 . A T 2743 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.8761;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.88;SB=-1.646e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2776,321,0 chrVIII 487338 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.470;QD=19.64;ReadPosRankSum=2.348;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1938,219,0 chrVIII 487644 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.60;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1475,165,0 chrVIII 487877 . T G 1448 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.74;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1481,177,0 chrVIII 488225 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.03;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1947,210,0 chrVIII 488330 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=7.0476;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.02;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:965,108,0 chrVIII 488425 . C A 1736 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.43;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1769,198,0 chrVIII 488476 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=93;Dels=0.00;FS=6.163;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.618;QD=22.57;ReadPosRankSum=2.922;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:3,87:93:99:2132,246,0 chrVIII 488588 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.22;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1145,132,0 chrVIII 489454 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.40;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1542,177,0 chrVIII 489580 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.54;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1699,201,0 chrVIII 489712 . C T 2351 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=20.27;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2384,270,0 chrVIII 489754 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.56;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1842,219,0 chrVIII 489755 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.86;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1957,219,0 chrVIII 489856 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7457;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.38;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1370,159,0 chrVIII 489898 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1482,165,0 chrVIII 489994 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.36;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2148,237,0 chrVIII 490087 . C G 2743 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.02;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2776,321,0 chrVIII 490111 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.9141;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.80;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3162,354,0 chrVIII 490193 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.89;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2080,243,0 chrVIII 490863 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.18;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1325,150,0 chrVIII 491043 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=17.67;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1835,210,0 chrVIII 491047 . C T 1886 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.46;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1919,210,0 chrVIII 491097 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.22;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2168,240,0 chrVIII 491125 . T A 1941 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=15.78;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1974,231,0 chrVIII 491126 . G T 2147 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.74;SB=-1.476e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2180,240,0 chrVIII 491154 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0057;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.50;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1733,189,0 chrVIII 491229 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.16;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2050,237,0 chrVIII 491290 . A G 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.373;QD=20.89;ReadPosRankSum=0.392;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2247,264,0 chrVIII 491435 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.69;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1923,219,0 chrVIII 491577 . C A 1800 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=17.82;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1833,207,0 chrVIII 492224 . T C 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=5.825;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.187;QD=18.55;ReadPosRankSum=1.679;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1239,144,0 chrVIII 492468 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.83;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1762,204,0 chrVIII 492713 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1508,171,0 chrVIII 492855 . G A 985 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.94;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1018,114,0 chrVIII 493139 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1533,174,0 chrVIII 493310 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.71;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1338,153,0 chrVIII 493321 . G T 1353 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.18;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1386,153,0 chrVIII 493601 . T C 846 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.9550;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.59;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:879,102,0 chrVIII 493855 . G C 1195 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.96;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1228,138,0 chrVIII 493856 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.89;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1224,138,0 chrVIII 493985 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.12;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1089,126,0 chrVIII 494024 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.48;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1247,141,0 chrVIII 494116 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.92;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1539,174,0 chrVIII 494183 . A G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=7.229;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.243;QD=21.52;ReadPosRankSum=2.301;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1475,168,0 chrVIII 494213 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.81;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1656,186,0 chrVIII 494225 . A G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=9.331;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.137;QD=19.78;ReadPosRankSum=2.389;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1635,195,0 chrVIII 494255 . T G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.697;QD=19.63;ReadPosRankSum=1.613;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1741,198,0 chrVIII 494336 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.99;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2092,234,0 chrVIII 494351 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.1003;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.66;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2161,240,0 chrVIII 494426 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.71;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2063,240,0 chrVIII 494510 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.27;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1242,138,0 chrVIII 494516 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=17.28;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1312,144,0 chrVIII 494552 . G T 1510 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.19;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1543,174,0 chrVIII 494980 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1450,171,0 chrVIII 495074 . C A 1345 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1378,153,0 chrVIII 495182 . A G 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=19.44;ReadPosRankSum=1.655;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:908,105,0 chrVIII 495342 . A G 1115 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1148,132,0 chrVIII 495494 . A G 1318 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1351,159,0 chrVIII 495688 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.316;QD=20.33;ReadPosRankSum=2.390;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1741,201,0 chrVIII 495923 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1601,180,0 chrVIII 496329 . T C 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=2.781;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.357;QD=21.88;ReadPosRankSum=2.355;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1171,135,0 chrVIII 496632 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1825,204,0 chrVIII 497055 . G C 2265 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2298,261,0 chrVIII 497380 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.46;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2136,246,0 chrVIII 497886 . T C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2071;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.268;QD=19.97;ReadPosRankSum=1.683;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1451,165,0 chrVIII 497907 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.445;QD=17.83;ReadPosRankSum=1.683;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1281,147,0 chrVIII 498021 . T C 1471 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.72;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1504,171,0 chrVIII 498868 . A T 1198 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=13.46;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1231,138,0 chrVIII 499040 . A G 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=4.433;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.638;QD=21.92;ReadPosRankSum=1.701;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2488,282,0 chrVIII 499849 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=15.02;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1985,219,0 chrVIII 499853 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=141;Dels=0.00;FS=4.678;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.682;QD=14.63;ReadPosRankSum=1.707;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,138:141:99:2096,234,0 chrVIII 500211 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.05;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1621,183,0 chrVIII 500294 . G A 2486 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.76;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2519,282,0 chrVIII 500535 . A T 1077 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.32;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1110,123,0 chrVIII 500784 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.21;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1508,174,0 chrVIII 500907 . T C 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=67;Dels=0.00;FS=3.028;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.197;QD=21.94;ReadPosRankSum=2.303;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1503,171,0 chrVIII 501036 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.92;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1436,162,0 chrVIII 501168 . A C 1417 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.96;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1450,165,0 chrVIII 501212 . A T 1675 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=66.5782;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.75;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1708,189,0 chrVIII 501245 . A G 1253 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.16;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1286,144,0 chrVIII 501271 . A T 1038 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.74;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1071,120,0 chrVIII 501299 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=15.70;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1179,135,0 chrVIII 501339 . A T 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=6.323;HaplotypeScore=6.3305;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.111;QD=20.91;ReadPosRankSum=2.354;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2187,243,0 chrVIII 501393 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.78;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1655,189,0 chrVIII 501446 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.13;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1132,129,0 chrVIII 501498 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.27;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1111,129,0 chrVIII 501512 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.97;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1133,129,0 chrVIII 501700 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.68;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1412,165,0 chrVIII 501703 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.80;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1439,168,0 chrVIII 501912 . A G 1504 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.45;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1537,171,0 chrVIII 501953 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.97;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1190,135,0 chrVIII 502009 . C A 1158 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.85;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1191,132,0 chrVIII 502167 . A G 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.622;QD=20.23;ReadPosRankSum=1.688;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1611,189,0 chrVIII 502354 . G T 1258 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1291,144,0 chrVIII 502447 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.92;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1665,186,0 chrVIII 502641 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6683;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.00;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1593,183,0 chrVIII 502930 . C T 2148 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2181,240,0 chrVIII 502960 . G C 1833 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.83;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1866,216,0 chrVIII 503308 . T A 1589 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.92;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1622,183,0 chrVIII 503518 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1456,165,0 chrVIII 503623 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.87;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2594,294,0 chrVIII 503996 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.54;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2065,231,0 chrVIII 504776 . A G 1508 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.5733;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=12;MQRankSum=-1.732;QD=14.23;ReadPosRankSum=1.693;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,100:106:99:1541,180,0 chrVIII 505427 . T G 1905 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.93;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1938,225,0 chrVIII 505764 . T A 1631 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.73;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1664,192,0 chrVIII 505776 . G T 1666 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.15;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1699,192,0 chrVIII 506159 . T C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.406;QD=20.57;ReadPosRankSum=1.647;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1720,195,0 chrVIII 506267 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.57;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2017,234,0 chrVIII 506279 . T A 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.193;QD=21.61;ReadPosRankSum=1.694;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2043,228,0 chrVIII 506643 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.165;QD=18.80;ReadPosRankSum=1.691;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1631,183,0 chrVIII 506768 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.36;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2247,252,0 chrVIII 506933 . A T 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.072;QD=19.59;ReadPosRankSum=1.512;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1267,141,0 chrVIII 507239 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1222,141,0 chrVIII 507971 . G T 1311 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.19;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1344,153,0 chrVIII 508754 . C T 700 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.07;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:733,81,0 chrVIII 509478 . A G 1145 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.20;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1178,132,0 chrVIII 509872 . A T 1460 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.86;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1493,168,0 chrVIII 510388 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1488,174,0 chrVIII 510895 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1865,210,0 chrVIII 511546 . C A 957 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.14;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:990,108,0 chrVIII 511880 . C T 326 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.58;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:39:359,39,0 chrVIII 512224 . A G 273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=62;Dels=0.00;FS=1.240;HaplotypeScore=68.3904;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;MQRankSum=-1.256;QD=4.40;ReadPosRankSum=1.880;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:12,50:62:39:306,39,0 chrVIII 512237 . T C 621 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=97.5470;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=9.55;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:75:654,75,0 chrVIII 512249 . T C 722 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3804;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=10.94;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:87:755,87,0 chrVIII 512593 . A T 1023 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.94;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1056,117,0 chrVIII 512746 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.32;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2058,231,0 chrVIII 513007 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.76;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1673,189,0 chrVIII 513025 . T C 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.305;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-1.625;QD=18.42;ReadPosRankSum=1.661;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1820,216,0 chrVIII 513034 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=8.451;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-2.262;QD=18.10;ReadPosRankSum=2.356;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1934,225,0 chrVIII 513526 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9903;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.01;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1838,213,0 chrVIII 513634 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.67;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2048,234,0 chrVIII 513837 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.09;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2416,276,0 chrVIII 514453 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.22;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1652,183,0 chrVIII 514601 . A T 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.776;QD=13.88;ReadPosRankSum=1.692;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1296,150,0 chrVIII 515162 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.03;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1337,147,0 chrVIII 515646 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.98;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1669,198,0 chrVIII 516015 . T G 1666 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.60;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1699,192,0 chrVIII 516468 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.56;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1184,135,0 chrVIII 516642 . A G 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;MQRankSum=-1.325;QD=12.44;ReadPosRankSum=1.681;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:879,102,0 chrVIII 516651 . T C 749 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=11.18;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:93:782,93,0 chrVIII 516666 . G A 749 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=10.70;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:782,90,0 chrVIII 516749 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4468;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.37;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1711,189,0 chrVIII 516779 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.07;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1508,171,0 chrVIII 516805 . T C 1171 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=18.59;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1204,138,0 chrVIII 516810 . T C 1115 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=6.179;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-0.667;QD=17.42;ReadPosRankSum=2.890;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1148,132,0 chrVIII 516811 . G A 1133 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=17.17;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1166,132,0 chrVIII 516967 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.94;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1083,126,0 chrVIII 516987 . C T 637 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=12.49;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:670,75,0 chrVIII 516988 . C T 633 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=12.17;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:666,75,0 chrVIII 517036 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=15.84;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1506,177,0 chrVIII 517079 . A G 2334 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.84;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2367,270,0 chrVIII 517336 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.16;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1259,141,0 chrVIII 518053 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1084;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.08;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1731,198,0 chrVIII 518179 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.24;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1745,195,0 chrVIII 518458 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8559;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.22;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1859,207,0 chrVIII 518911 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1150,132,0 chrVIII 518945 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.8367;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.13;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1120,129,0 chrVIII 519006 . G A 653 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.32;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:686,78,0 chrVIII 519013 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=13.80;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:69:599,69,0 chrVIII 519115 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.00;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1233,141,0 chrVIII 519116 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.90;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1347,150,0 chrVIII 519230 . T C 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;DP=65;Dels=0.00;FS=5.906;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.127;QD=19.69;ReadPosRankSum=2.732;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:3,61:65:99:1313,150,0 chrVIII 519269 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.33;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1462,168,0 chrVIII 519381 . C G 1770 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.12;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1803,213,0 chrVIII 519408 . C A 1715 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.99;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1748,189,0 chrVIII 519574 . A T 1467 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0844;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.26;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1500,165,0 chrVIII 520048 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.53;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:942,111,0 chrVIII 520123 . C G 999 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.21;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:99:1032,117,0 chrVIII 520252 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.68;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1274,141,0 chrVIII 520279 . A G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.299;QD=18.69;ReadPosRankSum=1.673;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1117,129,0 chrVIII 520374 . C T 489 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.11;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:522,60,0 chrVIII 520400 . G A 518 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.71;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:60:551,60,0 chrVIII 520416 . G A 494 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:57:527,57,0 chrVIII 520808 . A G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.176;QD=20.26;ReadPosRankSum=1.689;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1674,198,0 chrVIII 521047 . G A 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.096;DP=109;Dels=0.00;FS=3.050;HaplotypeScore=10.7676;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.700;QD=21.93;ReadPosRankSum=1.478;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2423,270,0 chrVIII 521132 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.08;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1980,228,0 chrVIII 521352 . C T 2108 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.49;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2141,237,0 chrVIII 521408 . T C 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.239;QD=20.60;ReadPosRankSum=1.704;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2567,297,0 chrVIII 521595 . T C 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.807;HaplotypeScore=11.6436;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.701;QD=17.17;ReadPosRankSum=1.703;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2128,240,0 chrVIII 521811 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.581;QD=21.53;ReadPosRankSum=1.672;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2509,288,0 chrVIII 521866 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.50;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1678,192,0 chrVIII 521987 . T G 2331 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.31;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2364,273,0 chrVIII 522055 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.45;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1485,168,0 chrVIII 522136 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=13.08;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1197,138,0 chrVIII 522216 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=16.96;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1390,153,0 chrVIII 522224 . T A 1636 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=17.22;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1669,186,0 chrVIII 522278 . T G 1544 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=14.04;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1577,183,0 chrVIII 522291 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=3.559;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.440;QD=13.28;ReadPosRankSum=1.703;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:1613,186,0 chrVIII 522592 . G T 1566 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=79.9266;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=18.42;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1599,174,0 chrVIII 522743 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.35;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1490,177,0 chrVIII 522771 . C T 907 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=11.78;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:940,102,0 chrVIII 522772 . A C 816 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=78;Dels=0.01;FS=6.314;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;MQRankSum=-1.249;QD=10.46;ReadPosRankSum=2.385;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:849,99,0 chrVIII 522775 . C T 873 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.01;FS=3.227;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=1.225;QD=10.52;ReadPosRankSum=1.267;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:906,99,0 chrVIII 522867 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.44;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1742,198,0 chrVIII 522950 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=54.2789;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=14.26;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1031,117,0 chrVIII 522999 . A T 1552 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=16.87;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1585,177,0 chrVIII 523061 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.42;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1769,207,0 chrVIII 523101 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=64;Dels=0.00;FS=7.270;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.675;QD=20.69;ReadPosRankSum=2.373;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1357,159,0 chrVIII 523118 . C A 1535 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=20.47;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1568,177,0 chrVIII 523146 . A G 1394 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4404;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.60;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1427,165,0 chrVIII 523180 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=15.30;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1578,183,0 chrVIII 523268 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=19.00;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1610,180,0 chrVIII 523278 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;MQRankSum=-0.422;QD=17.82;ReadPosRankSum=1.690;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1494,174,0 chrVIII 523454 . G A 874 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.42;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:907,99,0 chrVIII 523476 . G C 783 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=17.40;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:96:816,96,0 chrVIII 523772 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=23.24;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1590,180,0 chrVIII 523858 . A G 767 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=18.71;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:800,93,0 chrVIII 523870 . T C 758 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;MQRankSum=-0.524;QD=17.63;ReadPosRankSum=1.652;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:93:791,93,0 chrVIII 523907 . A G 1005 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=19.33;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1038,126,0 chrVIII 523945 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=18.21;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:889,105,0 chrVIII 523947 . T C 856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;MQRankSum=0.530;QD=17.47;ReadPosRankSum=1.662;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:889,105,0 chrVIII 523965 . T C 891 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=18.96;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:924,111,0 chrVIII 524009 . A T 764 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=19.10;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:797,99,0 chrVIII 524046 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=16.54;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:794,96,0 chrVIII 524047 . T G 752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=0.577;QD=16.35;ReadPosRankSum=0.577;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:96:785,96,0 chrVIII 524059 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=20.02;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1074,126,0 chrVIII 524082 . C G 871 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=15.84;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:904,111,0 chrVIII 524093 . A G 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;MQRankSum=-1.732;QD=14.92;ReadPosRankSum=1.662;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:93:764,93,0 chrVIII 524105 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=14.24;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:759,90,0 chrVIII 524115 . A G 763 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=15.57;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:93:796,93,0 chrVIII 524149 . G A 701 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=16.30;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:734,87,0 chrVIII 524165 . G A 577 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=19.23;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:610,72,0 chrVIII 524168 . A G 528 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.60;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:561,69,0 chrVIII 524194 . G A 706 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=20.17;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:739,87,0 chrVIII 524210 . A C 757 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=18.92;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:790,96,0 chrVIII 524226 . C G 473 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=15.26;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:63:506,63,0 chrVIII 524239 . G A 528 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=14.67;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:66:561,66,0 chrVIII 524250 . C T 675 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=17.31;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:708,84,0 chrVIII 524274 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=15.72;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:599,69,0 chrVIII 524349 . C G 579 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=12.87;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:612,78,0 chrVIII 524354 . C T 593 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;QD=12.62;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:78:626,78,0 chrVIII 524358 . G A 546 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=11.37;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:579,72,0 chrVIII 524380 . C G 507 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=12.67;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:540,69,0 chrVIII 524438 . T A 108.13 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=4.70;SB=-8.714e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:141,18,0 chrVIII 524443 . A G 133.06 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=5.54;SB=-1.081e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:21:166,21,0 chrVIII 524455 . A G 102.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=4.64;SB=-1.521e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:18:135,18,0 chrVIII 524473 . A G 211 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=8.44;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:244,30,0 chrVIII 524482 . A G 223 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=9.70;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:256,30,0 chrVIII 524485 . A G 216 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;QD=9.00;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:30:249,30,0 chrVIII 524554 . G A 260 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=11.30;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:293,36,0 chrVIII 524566 . C T 279 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=14.68;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:312,39,0 chrVIII 524575 . G A 251 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=13.94;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:284,36,0 chrVIII 524576 . G A 292 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=0;QD=16.22;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:39:325,39,0 chrVIII 524596 . T A 184.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=10.22;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:217,27,0 chrVIII 524610 . A G 247 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.35;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:280,33,0 chrVIII 524611 . A G 249 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.45;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:282,33,0 chrVIII 524616 . C T 217 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=11.42;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:250,30,0 chrVIII 524617 . C A 222 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=11.68;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:255,30,0 chrVIII 524645 . G C 445 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=13.91;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:478,57,0 chrVIII 524785 . G A 671 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=21.65;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:704,78,0 chrVIII 524829 . A G 299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=0.083;QD=14.24;ReadPosRankSum=1.569;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:39:332,39,0 chrVIII 524833 . A C 300 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;QD=15.79;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:39:333,39,0 chrVIII 524875 . T C 299 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=14.95;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:332,39,0 chrVIII 524948 . G C 423 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=20.14;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:456,54,0 chrVIII 524958 . C T 509 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=24.24;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:60:542,60,0 chrVIII 524963 . T C 485 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=22.05;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:518,60,0 chrVIII 525101 . C T 352 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=12.14;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:45:385,45,0 chrVIII 525105 . A T 330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=-1.600;QD=12.69;ReadPosRankSum=1.467;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:42:363,42,0 chrVIII 525107 . A G 330 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=13.75;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:42:363,42,0 chrVIII 525117 . G A 284 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.52;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:317,36,0 chrVIII 525119 . G A 303 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.43;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:336,36,0 chrVIII 525121 . T C 264 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.57;SB=-8.696e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:297,36,0 chrVIII 525157 . T C 145.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.07;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:178,21,0 chrVIII 525159 . G A 160.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.00;SB=-7.483e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:193,21,0 chrVIII 525168 . G A 70.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.41;SB=-5.140e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:103,12,0 chrVIII 525179 . C T 90.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=8.21;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:15:123,15,0 chrVIII 525181 . C T 62.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.21;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:12:95,12,0 chrVIII 525222 . A T 274 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=17.12;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:36:307,36,0 chrVIII 525230 . A C 261 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=16.31;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:294,36,0 chrVIII 525272 . G A 356 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=14.83;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:389,45,0 chrVIII 525297 . G A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.085;QD=1.32;ReadPosRankSum=-2.123;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,2:15:6:51,6,0 chrVIII 525298 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.953;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.425;QD=1.12;ReadPosRankSum=-2.123;SB=1.24 GT:AD:DP:GQ:PL 1/1:13,2:15:6:48,6,0 chrVIII 525301 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.425;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.085;QD=1.11;ReadPosRankSum=-2.123;SB=1.24 GT:AD:DP:GQ:PL 1/1:14,2:16:6:49,6,0 chrVIII 525317 . C T 254 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=11.55;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:287,33,0 chrVIII 525353 . A T 781 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=20.03;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:814,93,0 chrVIII 525385 . A G 853 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=22.45;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:886,102,0 chrVIII 525441 . C A 110.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=1;MQRankSum=-1.531;QD=8.46;ReadPosRankSum=1.531;SB=-6.751e+01 GT:AD:DP:GQ:PL 0/1:4,8:13:22:140,0,22 chrVIII 525442 . A G 107.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=1;MQRankSum=-2.228;QD=8.23;ReadPosRankSum=2.037;SB=-6.490e+01 GT:AD:DP:GQ:PL 0/1:5,7:13:26:137,0,26 chrVIII 525446 . A C 88.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;DP=12;Dels=0.00;FS=2.632;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=1;MQRankSum=-2.181;QD=7.33;ReadPosRankSum=0.143;SB=-4.995e+01 GT:AD:DP:GQ:PL 0/1:6,6:12:49:118,0,49 chrVIII 525451 . T C 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DP=12;Dels=0.00;FS=2.632;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=1;MQRankSum=-0.896;QD=2.75;ReadPosRankSum=-0.278;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:8,4:12:63:63,0,128 chrVIII 525535 . G A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=35;Dels=0.00;FS=10.726;HaplotypeScore=8.1273;MLEAC=1;MLEAF=0.500;MQ=24.30;MQ0=9;MQRankSum=0.562;QD=0.32;ReadPosRankSum=2.648;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:12,23:35:41:41,0,42 chrVIII 525537 . A T 15.17 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DP=34;Dels=0.00;FS=14.771;HaplotypeScore=7.1357;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=9;MQRankSum=1.853;QD=0.45;ReadPosRankSum=2.254;SB=-6.804e+01 GT:AD:DP:GQ:PL 0/1:11,23:34:19:45,0,19 chrVIII 525538 . A G 12.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;DP=34;Dels=0.00;FS=14.771;HaplotypeScore=7.1357;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=9;MQRankSum=1.853;QD=0.36;ReadPosRankSum=2.254;SB=-6.308e+01 GT:AD:DP:GQ:PL 0/1:11,23:34:15:42,0,15 chrVIII 525544 . C T 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.9698;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=8;QD=0.64;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:8,22:34:6:53,6,0 chrVIII 525550 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;DP=34;Dels=0.00;FS=34.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=8;MQRankSum=1.445;QD=0.52;ReadPosRankSum=1.284;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:11,23:34:6:49,6,0 chrVIII 525556 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=7;QD=0.62;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:7,26:35:6:53,6,0 chrVIII 525562 . A G 90.26 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.09;MQ0=6;QD=2.82;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:6,25:32:15:123,15,0 chrVIII 525577 . T C 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.398;DP=36;Dels=0.00;FS=14.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=5;MQRankSum=-1.062;QD=4.28;ReadPosRankSum=-0.056;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:6,30:36:21:187,21,0 chrVIII 525578 . G C 153.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=5;QD=4.25;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:5,31:36:21:186,21,0 chrVIII 525579 . G A 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=5;QD=4.28;SB=-2.907e+01 GT:AD:DP:GQ:PL 1/1:5,31:36:21:187,21,0 chrVIII 525586 . C A 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=5.18;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:126,15,0 chrVIII 525587 . T G 84.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=4.68;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:117,15,0 chrVIII 525588 . C A 77.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=4.29;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:110,15,0 chrVIII 525589 . A C 77.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=4.29;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:110,15,0 chrVIII 525593 . A G 90.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=5.01;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:123,15,0 chrVIII 525594 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=3;QD=5.57;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:133,15,0 chrVIII 525599 . C T 98.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=3;QD=5.17;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:3,16:19:15:131,15,0 chrVIII 525601 . A G 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=3;QD=5.07;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:3,16:19:15:129,15,0 chrVIII 525604 . T C 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=2;QD=5.35;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:2,16:18:15:129,15,0 chrVIII 525610 . C T 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=2;QD=5.38;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:15:135,15,0 chrVIII 525611 . G A 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=2;QD=4.96;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:2,17:19:15:127,15,0 chrVIII 525613 . A T 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=1;QD=5.74;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:136,15,0 chrVIII 525616 . A G 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=1;QD=5.79;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:137,15,0 chrVIII 525622 . T G 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=0;QD=5.83;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:0,16:16:15:126,15,0 chrVIII 525628 . T A 96.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.160;DP=24;Dels=0.00;FS=61.164;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;MQRankSum=0.417;QD=4.01;ReadPosRankSum=3.995;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:9,15:24:15:129,15,0 chrVIII 525631 . G T 110.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=1;QD=4.41;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:1,15:25:15:143,15,0 chrVIII 525634 . T C 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=1;QD=3.89;SB=-2.333e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:15:126,15,0 chrVIII 525635 . G A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=2;QD=4.09;SB=-2.423e+02 GT:AD:DP:GQ:PL 1/1:1,23:25:15:135,15,0 chrVIII 525637 . T C 109.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.024;DP=29;Dels=0.00;FS=61.262;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=2;MQRankSum=1.820;QD=3.77;ReadPosRankSum=2.208;SB=-2.723e-01 GT:AD:DP:GQ:PL 1/1:15,14:29:15:142,15,0 chrVIII 525644 . A C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.693;DP=30;Dels=0.00;FS=61.262;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=3;MQRankSum=0.170;QD=1.50;ReadPosRankSum=-0.752;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:17,13:30:9:77,9,0 chrVIII 525649 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=4;QD=0.75;SB=-1.770e+00 GT:AD:DP:GQ:PL 1/1:0,15:29:6:53,6,0 chrVIII 525761 . A T 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;DP=55;Dels=0.00;FS=5.431;HaplotypeScore=2.7789;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=16;MQRankSum=0.208;QD=0.64;ReadPosRankSum=2.569;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:20,35:55:35:65,0,35 chrVIII 525763 . T A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;DP=54;Dels=0.00;FS=2.595;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=16;MQRankSum=-1.137;QD=0.65;ReadPosRankSum=1.786;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:19,35:54:40:65,0,40 chrVIII 525766 . T C 32.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;DP=54;Dels=0.00;FS=2.595;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=16;MQRankSum=-1.245;QD=0.59;ReadPosRankSum=1.245;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:19,35:54:41:62,0,41 chrVIII 525787 . C T 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;DP=43;Dels=0.00;FS=9.211;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=12;MQRankSum=-0.835;QD=0.81;ReadPosRankSum=-0.969;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:15,28:43:40:65,0,40 chrVIII 525802 . C T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;DP=47;Dels=0.00;FS=57.524;HaplotypeScore=9.1798;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=10;MQRankSum=-0.442;QD=0.49;ReadPosRankSum=1.858;SB=-4.202e+01 GT:AD:DP:GQ:PL 0/1:19,28:47:53:53,0,131 chrVIII 525803 . C G 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DP=47;Dels=0.00;FS=35.467;HaplotypeScore=8.2064;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=10;MQRankSum=0.698;QD=0.49;ReadPosRankSum=3.098;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:22,25:47:53:53,0,125 chrVIII 525820 . T C 204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=43;Dels=0.00;FS=36.243;HaplotypeScore=1.9866;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=7;MQRankSum=-0.308;QD=4.74;ReadPosRankSum=-0.081;SB=-2.395e+01 GT:AD:DP:GQ:PL 0/1:28,14:43:91:234,0,91 chrVIII 525838 . G A 537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=12.3007;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=2;MQRankSum=-1.733;QD=12.79;ReadPosRankSum=0.983;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:3,37:42:43:570,43,0 chrVIII 525958 . A C 252 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.324;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=11;MQRankSum=-2.176;QD=6.63;ReadPosRankSum=1.065;SB=-2.176e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:33:285,33,0 chrVIII 525980 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.50;MQ0=8;QD=1.28;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:53,6,0 chrVIII 526127 . A G 521 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=6;MQRankSum=1.443;QD=8.68;ReadPosRankSum=2.359;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:2,58:60:63:554,63,0 chrVIII 526200 . T A 483 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.14;MQ0=6;QD=11.50;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:60:516,60,0 chrVIII 526216 . T C 332.76 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;DP=36;Dels=0.00;FS=53.913;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=1;MQRankSum=-0.117;QD=9.24;ReadPosRankSum=-2.050;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:15,21:36:6:364,6,0 chrVIII 526231 . C T 176.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=22;Dels=0.00;FS=44.682;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.17;MQ0=0;MQRankSum=-2.036;QD=8.01;ReadPosRankSum=-2.758;SB=-1.194e+00 GT:AD:DP:GQ:PL 1/1:11,11:22:8:208,8,0 chrVIII 526234 . G A 92.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DP=21;Dels=0.00;FS=26.641;HaplotypeScore=3.7785;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=0;MQRankSum=-2.452;QD=4.40;ReadPosRankSum=-2.736;SB=-9.245e-01 GT:AD:DP:GQ:PL 0/1:12,9:21:1:121,0,1 chrVIII 526287 . A G 63.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=20.1805;MLEAC=2;MLEAF=1.00;MQ=20.97;MQ0=0;QD=3.74;SB=-6.945e+01 GT:AD:DP:GQ:PL 1/1:0,16:17:12:96,12,0 chrVIII 526313 . A G 28.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.031;DP=30;Dels=0.00;FS=16.385;HaplotypeScore=24.2055;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=0;MQRankSum=0.589;QD=0.94;ReadPosRankSum=2.522;SB=-7.007e+01 GT:AD:DP:GQ:PL 0/1:20,9:30:15:58,0,15 chrVIII 526329 . G A 52.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;DP=32;Dels=0.00;FS=4.715;HaplotypeScore=28.5923;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=0;MQRankSum=2.627;QD=1.63;ReadPosRankSum=1.343;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:20,12:32:25:82,0,25 chrVIII 526333 . T A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DP=32;Dels=0.00;FS=10.687;HaplotypeScore=25.1459;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=0;MQRankSum=-1.066;QD=0.72;ReadPosRankSum=0.500;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:8,24:32:51:53,0,51 chrVIII 526366 . C T 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;DP=49;Dels=0.00;FS=23.478;HaplotypeScore=58.8061;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=0;MQRankSum=-3.135;QD=0.33;ReadPosRankSum=2.267;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:15,34:49:46:46,0,81 chrVIII 526390 . C T 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;DP=68;Dels=0.00;FS=36.092;HaplotypeScore=73.9286;MLEAC=1;MLEAF=0.500;MQ=24.57;MQ0=0;MQRankSum=-0.752;QD=1.18;ReadPosRankSum=-0.350;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:23,45:68:99:110,0,138 chrVIII 526393 . T G 79.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;DP=72;Dels=0.00;FS=0.880;HaplotypeScore=96.9502;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=0;MQRankSum=-1.379;QD=1.10;ReadPosRankSum=-2.249;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:39,33:72:99:109,0,134 chrVIII 526396 . A G,T 186.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.082;DP=73;Dels=0.00;FS=35.076;HaplotypeScore=55.7549;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.94;MQ0=0;MQRankSum=1.427;QD=2.55;ReadPosRankSum=-0.874;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/2:21,20,32:73:99:246,113,114,116,0,117 chrVIII 526399 . C T 130.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;DP=77;Dels=0.00;FS=54.108;HaplotypeScore=103.1785;MLEAC=1;MLEAF=0.500;MQ=25.03;MQ0=0;MQRankSum=-0.633;QD=1.69;ReadPosRankSum=2.562;SB=-2.420e+02 GT:AD:DP:GQ:PL 0/1:20,57:77:40:160,0,40 chrVIII 526402 . T C 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=84;Dels=0.00;FS=64.870;HaplotypeScore=132.3712;MLEAC=1;MLEAF=0.500;MQ=24.96;MQ0=0;MQRankSum=-2.027;QD=0.40;ReadPosRankSum=1.751;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,15:84:64:64,0,178 chrVIII 526405 . G A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DP=84;Dels=0.00;FS=60.989;HaplotypeScore=123.4895;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=0;MQRankSum=-2.349;QD=0.46;ReadPosRankSum=2.115;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,17:84:69:69,0,214 chrVIII 526406 . A T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DP=85;Dels=0.00;FS=59.767;HaplotypeScore=123.4895;MLEAC=1;MLEAF=0.500;MQ=25.17;MQ0=0;MQRankSum=-1.534;QD=0.32;ReadPosRankSum=2.212;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,14:85:57:57,0,238 chrVIII 526411 . T C 122.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;DP=86;Dels=0.00;FS=76.006;HaplotypeScore=69.9723;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-0.282;QD=1.42;ReadPosRankSum=-0.015;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:22,64:86:99:152,0,103 chrVIII 526414 . T C 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;DP=86;Dels=0.00;FS=160.307;HaplotypeScore=57.1387;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-0.409;QD=0.43;ReadPosRankSum=-0.094;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,50:86:67:67,0,143 chrVIII 526415 . G A 91.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;DP=83;Dels=0.00;FS=59.727;HaplotypeScore=69.7000;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=2.845;QD=1.10;ReadPosRankSum=0.425;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,18:83:99:121,0,168 chrVIII 526420 . C T 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;DP=79;Dels=0.00;FS=45.958;HaplotypeScore=61.0317;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=0;MQRankSum=0.978;QD=1.32;ReadPosRankSum=0.729;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,18:78:99:134,0,169 chrVIII 526423 . T C 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550;DP=79;Dels=0.00;FS=57.036;HaplotypeScore=71.8618;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=3.801;QD=0.95;ReadPosRankSum=0.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,13:79:99:105,0,182 chrVIII 526425 . C T 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.383;DP=79;Dels=0.00;FS=74.044;HaplotypeScore=76.8228;MLEAC=1;MLEAF=0.500;MQ=25.23;MQ0=0;MQRankSum=-1.831;QD=0.27;ReadPosRankSum=-1.514;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,13:79:51:51,0,263 chrVIII 526429 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DP=79;Dels=0.00;FS=62.419;HaplotypeScore=103.1557;MLEAC=1;MLEAF=0.500;MQ=25.25;MQ0=0;MQRankSum=-0.932;QD=0.24;ReadPosRankSum=-1.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,13:79:49:49,0,249 chrVIII 526433 . C G 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;DP=75;Dels=0.00;FS=100.652;HaplotypeScore=82.0867;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=0;MQRankSum=2.492;QD=1.20;ReadPosRankSum=-0.668;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:53,10:74:91:120,0,91 chrVIII 526434 . A T 174.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DP=76;Dels=0.00;FS=165.826;HaplotypeScore=69.8431;MLEAC=1;MLEAF=0.500;MQ=25.11;MQ0=0;MQRankSum=0.377;QD=2.29;ReadPosRankSum=-1.156;SB=-3.014e+00 GT:AD:DP:GQ:PL 0/1:56,20:76:99:204,0,105 chrVIII 526435 . A G 17.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;DP=77;Dels=0.00;FS=64.928;HaplotypeScore=69.8431;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=0;MQRankSum=-1.402;QD=0.22;ReadPosRankSum=-1.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,10:77:47:47,0,272 chrVIII 526444 . C T 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.616;DP=77;Dels=0.00;FS=86.564;HaplotypeScore=58.7294;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=0;MQRankSum=2.696;QD=0.32;ReadPosRankSum=2.839;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,42:77:55:55,0,222 chrVIII 526450 . T C 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DP=75;Dels=0.00;FS=65.378;HaplotypeScore=40.4469;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=-0.091;QD=1.81;ReadPosRankSum=4.192;SB=-6.402e+01 GT:AD:DP:GQ:PL 0/1:13,62:75:95:166,0,95 chrVIII 526451 . G A 116.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;DP=74;Dels=0.00;FS=100.435;HaplotypeScore=36.5477;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=0;MQRankSum=2.216;QD=1.57;ReadPosRankSum=-0.843;SB=-1.821e+00 GT:AD:DP:GQ:PL 0/1:65,9:74:90:146,0,90 chrVIII 526453 . T C 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;DP=77;Dels=0.00;FS=120.402;HaplotypeScore=36.5477;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=0;MQRankSum=1.114;QD=1.44;ReadPosRankSum=-1.220;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:67,10:77:95:141,0,95 chrVIII 526459 . C T 164.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;DP=71;Dels=0.00;FS=44.434;HaplotypeScore=14.2633;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=0;MQRankSum=0.187;QD=2.31;ReadPosRankSum=1.185;SB=-6.102e+01 GT:AD:DP:GQ:PL 0/1:4,67:71:39:194,0,39 chrVIII 526462 . T C 240 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.7095;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=0;MQRankSum=1.492;QD=3.33;ReadPosRankSum=1.684;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:33:273,33,0 chrVIII 526468 . T A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;DP=74;Dels=0.00;FS=82.678;HaplotypeScore=15.5717;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=0;MQRankSum=1.257;QD=0.28;ReadPosRankSum=-2.743;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:68,6:74:51:51,0,143 chrVIII 526474 . T C 109.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.639;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=13.6078;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=0;MQRankSum=1.958;QD=1.60;ReadPosRankSum=-1.043;SB=2.87 GT:AD:DP:GQ:PL 1/1:20,48:68:18:142,18,0 chrVIII 526480 . G A 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=24.7705;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=0;MQRankSum=-0.903;QD=1.05;ReadPosRankSum=0.516;SB=-6.606e-03 GT:AD:DP:GQ:PL 0/1:13,53:66:44:99,0,44 chrVIII 526492 . T A 138.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=0;QD=2.60;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,50:53:21:171,21,0 chrVIII 526495 . A C 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=16.3901;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=0;QD=2.53;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,53:53:21:167,21,0 chrVIII 526498 . T C 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7369;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=2.52;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,51:52:21:164,21,0 chrVIII 526501 . C T 120.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=17.243;HaplotypeScore=5.7103;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=0;MQRankSum=0.229;QD=2.27;ReadPosRankSum=1.667;SB=-3.551e+00 GT:AD:DP:GQ:PL 1/1:1,52:53:2:150,2,0 chrVIII 526513 . C T 110.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=16.721;HaplotypeScore=14.7571;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=0;MQRankSum=-0.258;QD=2.34;ReadPosRankSum=1.511;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:1,46:47:18:143,18,0 chrVIII 526522 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=23.2016;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=0;MQRankSum=1.896;QD=0.93;ReadPosRankSum=1.807;SB=-6.953e-03 GT:AD:DP:GQ:PL 0/1:27,19:46:37:73,0,37 chrVIII 526525 . C T 112.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.235;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=23.2305;MLEAC=2;MLEAF=1.00;MQ=21.50;MQ0=0;MQRankSum=-0.494;QD=2.44;ReadPosRankSum=2.541;SB=-1.203e-01 GT:AD:DP:GQ:PL 1/1:5,41:46:18:145,18,0 chrVIII 526528 . T G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DP=46;Dels=0.00;FS=2.973;HaplotypeScore=14.2101;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=0;MQRankSum=-0.178;QD=0.41;ReadPosRankSum=1.205;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:27,19:46:49:49,0,57 chrVIII 526531 . A T 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=43;Dels=0.00;FS=3.025;HaplotypeScore=15.2151;MLEAC=1;MLEAF=0.500;MQ=21.84;MQ0=0;MQRankSum=0.038;QD=0.91;ReadPosRankSum=0.979;SB=-6.528e-03 GT:AD:DP:GQ:PL 0/1:24,18:43:54:69,0,54 chrVIII 526546 . T C 31.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=27;Dels=0.00;FS=25.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=-0.880;QD=1.16;ReadPosRankSum=-1.065;SB=-3.228e+00 GT:AD:DP:GQ:PL 0/1:2,25:27:10:61,0,10 chrVIII 526549 . T C 36.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;DP=27;Dels=0.00;FS=25.453;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.49;MQ0=0;MQRankSum=-0.694;QD=1.34;ReadPosRankSum=-1.620;SB=-3.228e+00 GT:AD:DP:GQ:PL 0/1:2,25:27:10:66,0,10 chrVIII 526552 . G C 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.8445;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=0;QD=2.40;SB=-4.652e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:12:95,12,0 chrVIII 526561 . C T 31.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DP=21;Dels=0.00;FS=2.570;HaplotypeScore=3.9229;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=0;MQRankSum=1.102;QD=1.49;ReadPosRankSum=-0.533;SB=-3.722e+01 GT:AD:DP:GQ:PL 0/1:12,9:21:10:61,0,10 chrVIII 526594 . C T 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.061;DP=14;Dels=0.00;FS=30.004;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=0;MQRankSum=-0.354;QD=5.04;ReadPosRankSum=-1.485;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:4,10:14:12:103,12,0 chrVIII 526597 . T C 72.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=0;MQRankSum=-0.189;QD=3.63;ReadPosRankSum=2.205;SB=-7.026e+01 GT:AD:DP:GQ:PL 1/1:2,18:20:12:105,12,0 chrVIII 526609 . T C 58.42 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=0;MQRankSum=-1.615;QD=2.34;ReadPosRankSum=1.998;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:14,11:25:7:88,0,7 chrVIII 526615 . G A 99.26 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.27;MQ0=0;QD=3.82;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:15:132,15,0 chrVIII 526622 . A G 63.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.40;MQ0=0;MQRankSum=-1.694;QD=2.26;ReadPosRankSum=2.112;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:16,12:28:7:93,0,7 chrVIII 526627 . T A 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=29;Dels=0.00;FS=14.624;HaplotypeScore=2.9716;MLEAC=2;MLEAF=1.00;MQ=21.71;MQ0=0;MQRankSum=-0.896;QD=3.28;ReadPosRankSum=1.614;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:1,28:29:15:128,15,0 chrVIII 526630 . A C 91.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=26.385;HaplotypeScore=6.6804;MLEAC=2;MLEAF=1.00;MQ=21.57;MQ0=0;MQRankSum=-1.289;QD=3.04;ReadPosRankSum=2.286;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,28:30:15:124,15,0 chrVIII 526633 . T C 94.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=11.903;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=0;MQRankSum=-0.280;QD=3.04;ReadPosRankSum=1.509;SB=-1.927e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:15:127,15,0 chrVIII 526636 . C T 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.117;DP=32;Dels=0.00;FS=26.955;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=0;MQRankSum=-0.584;QD=2.98;ReadPosRankSum=1.985;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:2,30:32:15:128,15,0 chrVIII 526648 . C T 122.13 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.4054;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=2;QD=3.21;SB=-4.814e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:18:155,18,0 chrVIII 526651 . T C 119.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=11.3249;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=2;MQRankSum=-0.254;QD=2.65;ReadPosRankSum=3.627;SB=-4.513e+01 GT:AD:DP:GQ:PL 1/1:9,36:45:18:152,18,0 chrVIII 526696 . C T 503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=19.8834;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=1;MQRankSum=-0.088;QD=8.67;ReadPosRankSum=1.928;SB=-2.400e+01 GT:AD:DP:GQ:PL 1/1:12,46:58:36:536,36,0 chrVIII 526723 . G T 547 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.4688;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=1;QD=11.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:78:580,78,0 chrVIII 526729 . C T 553 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.14;MQ0=0;QD=12.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:78:586,78,0 chrVIII 526732 . T C 498 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=0;QD=11.58;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:72:531,72,0 chrVIII 526750 . G A 184 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.8711;MLEAC=2;MLEAF=1.00;MQ=18.45;MQ0=0;QD=9.68;SB=-1.492e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:30:217,30,0 chrVIII 526816 . T C 341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.805;DP=29;Dels=0.00;FS=10.098;HaplotypeScore=4.4509;MLEAC=2;MLEAF=1.00;MQ=22.74;MQ0=1;MQRankSum=-0.886;QD=11.76;ReadPosRankSum=3.053;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:4,25:29:48:374,48,0 chrVIII 526819 . T C 418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.502;DP=42;Dels=0.00;FS=26.996;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=2;MQRankSum=-2.526;QD=9.95;ReadPosRankSum=4.113;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:9,33:42:57:451,57,0 chrVIII 526831 . C T 647.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;DP=95;Dels=0.00;FS=12.186;HaplotypeScore=13.3971;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=2;MQRankSum=2.535;QD=6.81;ReadPosRankSum=0.828;SB=-2.840e+02 GT:AD:DP:GQ:PL 0/1:27,68:95:36:677,0,36 chrVIII 526855 . T C 2422 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.253;DP=210;Dels=0.00;FS=29.324;HaplotypeScore=36.1530;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=7;MQRankSum=-0.144;QD=11.53;ReadPosRankSum=4.072;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:14,196:210:99:2455,288,0 chrVIII 526921 . T C 754.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;DP=285;Dels=0.00;FS=6.337;HaplotypeScore=62.7723;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=6;MQRankSum=-4.088;QD=2.65;ReadPosRankSum=-3.044;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:204,81:285:99:784,0,2799 chrVIII 526930 . C T 2420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.011;DP=241;Dels=0.00;FS=1.057;HaplotypeScore=87.0831;MLEAC=1;MLEAF=0.500;MQ=26.82;MQ0=6;MQRankSum=6.164;QD=10.04;ReadPosRankSum=1.383;SB=-1.376e+03 GT:AD:DP:GQ:PL 0/1:86,152:241:99:2450,0,838 chrVIII 526939 . T C 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977;DP=221;Dels=0.00;FS=2.675;HaplotypeScore=81.6394;MLEAC=1;MLEAF=0.500;MQ=26.37;MQ0=4;MQRankSum=-5.298;QD=1.93;ReadPosRankSum=4.709;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:161,59:221:99:457,0,2453 chrVIII 526966 . C T 898.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;DP=141;Dels=0.00;FS=1.369;HaplotypeScore=31.8869;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=2;MQRankSum=-3.172;QD=6.37;ReadPosRankSum=3.444;SB=-6.020e+02 GT:AD:DP:GQ:PL 0/1:57,82:141:99:928,0,681 chrVIII 526984 . C T 254.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=19.3869;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=2;MQRankSum=1.542;QD=2.73;ReadPosRankSum=-1.099;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:54,39:93:99:284,0,690 chrVIII 526993 . G T 663 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.966;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6067;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=2;MQRankSum=-1.535;QD=12.28;ReadPosRankSum=-0.081;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:95:696,95,0 chrVIII 526999 . C T 75.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736;DP=18;Dels=0.00;FS=3.310;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=17.26;MQ0=0;MQRankSum=1.042;QD=4.18;ReadPosRankSum=0.579;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:108,15,0 chrVIII 527002 . T C 75.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.7892;MLEAC=2;MLEAF=1.00;MQ=17.39;MQ0=0;QD=6.27;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:108,15,0 chrVIII 527020 . G A 75.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=0;MQRankSum=0.696;QD=7.53;ReadPosRankSum=-1.044;SB=-5.276e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:15:108,15,0 chrVIII 527086 . T C 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=7;Dels=0.00;FS=13.222;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=0;MQRankSum=1.495;QD=2.27;ReadPosRankSum=-1.495;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:2,5:7:6:47,6,0 chrVIII 527089 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=0;QD=2.41;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:48,6,0 chrVIII 527092 . G C 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=0;QD=2.13;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:46,6,0 chrVIII 527119 . C T 105.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.8477;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=0;MQRankSum=0.941;QD=3.62;ReadPosRankSum=0.941;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:10,19:29:23:135,0,23 chrVIII 527125 . T C 176.01 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.8477;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=0;QD=5.68;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:27:209,27,0 chrVIII 527134 . C T 246 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=0;QD=6.47;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:36:279,36,0 chrVIII 527137 . T C 298 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=0;QD=7.27;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:42:331,42,0 chrVIII 527149 . T C 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.022;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=10.6321;MLEAC=1;MLEAF=0.500;MQ=23.80;MQ0=0;MQRankSum=3.471;QD=2.24;ReadPosRankSum=-0.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,29:51:99:144,0,189 chrVIII 527155 . G A 277.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=32.2627;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=0;MQRankSum=1.923;QD=5.13;ReadPosRankSum=0.884;SB=-2.686e+00 GT:AD:DP:GQ:PL 0/1:6,47:54:30:307,0,30 chrVIII 527162 . A G 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=34.6321;MLEAC=1;MLEAF=0.500;MQ=23.43;MQ0=0;MQRankSum=2.021;QD=1.14;ReadPosRankSum=0.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,19:58:96:96,0,280 chrVIII 527167 . T A 401 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=28.8099;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=7.71;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,46:51:57:434,57,0 chrVIII 527169 . G C 429 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=28.8099;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=8.25;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:60:462,60,0 chrVIII 527170 . A C 419 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.733;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=26.9544;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;MQRankSum=-0.200;QD=8.06;ReadPosRankSum=-1.266;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:60:452,60,0 chrVIII 527173 . T C 427 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.7388;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=0;QD=6.67;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:60:460,60,0 chrVIII 527176 . C T 428 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7388;MLEAC=2;MLEAF=1.00;MQ=23.67;MQ0=0;MQRankSum=-0.577;QD=5.49;ReadPosRankSum=-1.688;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,77:78:60:461,60,0 chrVIII 527191 . T C 324.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;DP=127;Dels=0.00;FS=8.263;HaplotypeScore=62.1409;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=2;MQRankSum=2.537;QD=2.55;ReadPosRankSum=3.344;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,50:127:99:354,0,331 chrVIII 527197 . C T 57.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=131;Dels=0.00;FS=4.959;HaplotypeScore=113.3972;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=2;MQRankSum=2.364;QD=0.44;ReadPosRankSum=-0.793;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,39:131:87:87,0,732 chrVIII 527200 . T C 69.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.019;DP=137;Dels=0.00;FS=7.587;HaplotypeScore=134.1147;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=2;MQRankSum=-0.094;QD=0.50;ReadPosRankSum=2.773;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,43:137:99:99,0,711 chrVIII 527203 . T G 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=113.6578;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=2;MQRankSum=2.178;QD=0.76;ReadPosRankSum=-0.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,21:136:99:134,0,656 chrVIII 527206 . A T 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=138.9096;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=2;MQRankSum=1.767;QD=0.59;ReadPosRankSum=-0.321;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,23:134:99:109,0,688 chrVIII 527209 . T C 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DP=137;Dels=0.00;FS=13.838;HaplotypeScore=116.7599;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=2;MQRankSum=2.155;QD=2.12;ReadPosRankSum=-1.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,56:137:99:320,0,461 chrVIII 527216 . G A 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.216;DP=139;Dels=0.00;FS=3.910;HaplotypeScore=76.6152;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=2;MQRankSum=-1.982;QD=0.90;ReadPosRankSum=2.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,53:139:99:155,0,644 chrVIII 527218 . T G 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;DP=139;Dels=0.00;FS=3.958;HaplotypeScore=45.5540;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=2;MQRankSum=-1.786;QD=0.73;ReadPosRankSum=1.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,55:139:99:131,0,657 chrVIII 527225 . A G 108.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.153;DP=141;Dels=0.00;FS=8.533;HaplotypeScore=33.5794;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=2;MQRankSum=-0.734;QD=0.77;ReadPosRankSum=1.899;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,61:141:99:138,0,650 chrVIII 527230 . C T 591.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.409;DP=136;Dels=0.00;FS=17.515;HaplotypeScore=59.8805;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=2;MQRankSum=1.699;QD=4.35;ReadPosRankSum=-1.013;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:60,76:136:99:621,0,132 chrVIII 527236 . C T 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=130;Dels=0.00;FS=6.243;HaplotypeScore=64.4926;MLEAC=1;MLEAF=0.500;MQ=23.86;MQ0=2;MQRankSum=-1.872;QD=1.75;ReadPosRankSum=-2.017;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,56:130:99:257,0,459 chrVIII 527254 . C T 386.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.698;DP=111;Dels=0.00;FS=13.974;HaplotypeScore=26.3140;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=2;MQRankSum=1.695;QD=3.48;ReadPosRankSum=0.460;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:45,66:111:99:416,0,203 chrVIII 527260 . T C 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698;DP=105;Dels=0.00;FS=11.677;HaplotypeScore=25.3562;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=2;MQRankSum=1.160;QD=7.28;ReadPosRankSum=-1.732;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:797,99,0 chrVIII 527269 . C T 636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DP=73;Dels=0.00;FS=7.242;HaplotypeScore=12.4519;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=2;MQRankSum=1.685;QD=8.71;ReadPosRankSum=-1.685;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:81:669,81,0 chrVIII 527286 . C G 58.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DP=16;Dels=0.00;FS=20.792;HaplotypeScore=3.8204;MLEAC=2;MLEAF=1.00;MQ=22.09;MQ0=0;MQRankSum=2.143;QD=3.66;ReadPosRankSum=-2.302;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:2,14:16:12:91,12,0 chrVIII 527481 . C T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.969;DP=41;Dels=0.00;FS=16.266;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.84;MQ0=2;MQRankSum=-2.353;QD=1.98;ReadPosRankSum=-1.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,15:41:99:111,0,313 chrVIII 527492 . A G 275.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.518;DP=41;Dels=0.00;FS=16.266;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.84;MQ0=2;MQRankSum=2.670;QD=6.71;ReadPosRankSum=0.303;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:15,26:41:99:305,0,113 chrVIII 527514 . C T 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DP=40;Dels=0.00;FS=18.677;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.61;MQ0=2;MQRankSum=-1.347;QD=2.28;ReadPosRankSum=1.861;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,14:40:99:121,0,303 chrVIII 527517 . C A 539 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=2;QD=14.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:66:572,66,0 chrVIII 527675 . A G 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.988;DP=71;Dels=0.00;FS=19.083;HaplotypeScore=35.5444;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=1;MQRankSum=2.741;QD=1.48;ReadPosRankSum=-1.998;SB=-8.244e-03 GT:AD:DP:GQ:PL 0/1:47,24:71:31:135,0,31 chrVIII 527678 . G A 183.03 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=59.8564;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=2.58;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:24:216,24,0 chrVIII 527776 . T C 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=2;MQRankSum=-0.780;QD=15.19;ReadPosRankSum=1.646;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:78:671,78,0 chrVIII 527797 . T G 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.110;DP=75;Dels=0.00;FS=2.450;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=3;MQRankSum=-1.364;QD=15.64;ReadPosRankSum=3.159;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1206,144,0 chrVIII 527851 . G A 1068 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3126;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=4;QD=15.26;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1101,126,0 chrVIII 527956 . A G 93.26 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=18.23;MQ0=5;QD=2.27;SB=-7.276e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:15:126,15,0 chrVIII 527998 . G A 1434 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=9;QD=12.47;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:1467,165,0 chrVIII 528055 . A G 1307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.463;DP=122;Dels=0.00;FS=11.750;HaplotypeScore=3.3130;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=6;MQRankSum=1.245;QD=10.71;ReadPosRankSum=1.498;SB=-7.230e+02 GT:AD:DP:GQ:PL 0/1:38,84:122:99:1337,0,275 chrVIII 528064 . A G 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789;DP=106;Dels=0.00;FS=16.776;HaplotypeScore=8.8700;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=4;MQRankSum=-0.358;QD=1.09;ReadPosRankSum=-1.408;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,28:106:99:146,0,1305 chrVIII 528245 . C G 641 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=11;QD=9.71;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:674,78,0 chrVIII 528289 . T A 178.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.714;DP=72;Dels=0.00;FS=17.178;HaplotypeScore=29.2024;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=7;MQRankSum=-1.680;QD=2.47;ReadPosRankSum=5.488;SB=-6.103e+01 GT:AD:DP:GQ:PL 1/1:46,26:72:24:211,24,0 chrVIII 528300 . G T 97.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629;DP=63;Dels=0.00;FS=12.814;HaplotypeScore=12.6226;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=4;MQRankSum=-1.384;QD=1.54;ReadPosRankSum=-4.943;SB=-1.526e+01 GT:AD:DP:GQ:PL 1/1:47,16:63:15:130,15,0 chrVIII 528301 . G A 91.26 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=12.6226;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=4;QD=1.45;SB=-8.027e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:15:124,15,0 chrVIII 528310 . G A 75.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=20.2199;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=1;MQRankSum=-0.484;QD=1.28;ReadPosRankSum=-4.683;SB=2.49 GT:AD:DP:GQ:PL 1/1:48,11:59:12:108,12,0 chrVIII 528321 . C T 40.97 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.09;MQ0=2;QD=1.08;SB=-5.398e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:9:73,9,0 chrVIII 528335 . C A 81.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.114;DP=29;Dels=0.00;FS=3.078;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=3;MQRankSum=-1.557;QD=2.81;ReadPosRankSum=0.830;SB=2.49 GT:AD:DP:GQ:PL 1/1:18,11:29:12:114,12,0 chrVIII 528352 . C T 161.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.503;DP=29;Dels=0.00;FS=4.607;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=3;MQRankSum=1.563;QD=5.55;ReadPosRankSum=2.371;SB=4.06 GT:AD:DP:GQ:PL 1/1:12,17:29:21:194,21,0 chrVIII 528367 . A G 178.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=3;MQRankSum=2.007;QD=5.74;ReadPosRankSum=2.275;SB=-4.304e+01 GT:AD:DP:GQ:PL 1/1:2,29:31:24:211,24,0 chrVIII 528435 . T A 127.13 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=6;QD=4.10;SB=-1.801e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:18:160,18,0 chrVIII 528460 . C T 252 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=4;QD=8.69;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:285,33,0 chrVIII 528703 . T C 194.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=7;MQRankSum=1.273;QD=8.82;ReadPosRankSum=-0.810;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:1,20:22:27:227,27,0 chrVIII 528724 . A G 239 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=8;QD=8.54;SB=-1.080e-02 GT:AD:DP:GQ:PL 1/1:0,28:28:33:272,33,0 chrVIII 528754 . C T 202.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=4;QD=9.62;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:235,27,0 chrVIII 528898 . G A 94.26 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=0;QD=9.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,10:10:15:127,15,0 chrVIII 528988 . T C 302 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=4;MQRankSum=1.404;QD=12.08;ReadPosRankSum=1.569;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,24:25:39:335,39,0 chrVIII 529006 . G C 194.01 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.35;MQ0=4;QD=10.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:27:227,27,0 chrVIII 529288 . C T 496 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=8.3640;MLEAC=2;MLEAF=1.00;MQ=22.07;MQ0=4;QD=13.05;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:60:529,60,0 chrVIII 529315 . T C 342 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=30;Dels=0.00;FS=4.437;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=4;MQRankSum=1.595;QD=11.40;ReadPosRankSum=1.595;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,28:30:45:375,45,0 chrVIII 529383 . A G 51.97 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=1;QD=5.77;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:84,9,0 chrVIII 529384 . T C 50.97 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=1;QD=5.66;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:83,9,0 chrVIII 530218 . T G 64.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.57;MQ0=4;QD=5.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:12:97,12,0 chrVIII 530316 . C T 766 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=8;QD=16.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:90:799,90,0 chrVIII 530335 . C A 171.03 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=8;QD=7.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:24:204,24,0 chrVIII 530342 . T C 122.13 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=8;QD=6.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:18:155,18,0 chrVIII 530388 . T C 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.70;MQ0=2;QD=4.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:55,6,0 chrVIII 530539 . T C 403 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=11;QD=12.59;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:51:436,51,0 chrVIII 530713 . T C 146.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=2;QD=10.43;SB=-9.956e+01 GT:AD:DP:GQ:PL 1/1:0,13:14:21:179,21,0 chrVIII 530803 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=0;QD=2.42;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:53,6,0 chrVIII 530816 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=3.00;SB=-2.896e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:77,9,0 chrVIII 530851 . A G 205.01 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=4;QD=6.83;SB=-7.902e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:27:238,27,0 chrVIII 530860 . T G 244 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.70;MQ0=4;MQRankSum=-1.398;QD=6.97;ReadPosRankSum=1.509;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:33:277,33,0 chrVIII 530943 . A T 427 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=1;QD=14.23;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:51:460,51,0 chrVIII 531012 . C G 72.51 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=2;QD=3.82;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:12:105,12,0 chrVIII 531035 . G A 73.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=2;QD=4.32;SB=-7.655e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:106,12,0 chrVIII 531036 . G C 71.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=2;QD=4.47;SB=-7.455e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:12:104,12,0 chrVIII 531053 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=1;QD=2.07;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:54,6,0 chrVIII 531062 . T C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=1;QD=1.71;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:50,6,0 chrVIII 531065 . C A 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=1;QD=2.64;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:55,6,0 chrVIII 531067 . A T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=1;QD=1.98;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:49,6,0 chrVIII 531082 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=1;QD=2.83;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:6:51,6,0 chrVIII 531123 . A T 46.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=1;QD=7.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:9:79,9,0 chrVIII 531141 . T G 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=1;QD=8.02;SB=-7.376e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:129,15,0 chrVIII 531146 . T A 101.26 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=1;QD=7.23;SB=-8.076e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:15:134,15,0 chrVIII 531148 . T C 100.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=1;MQRankSum=-1.240;QD=6.68;ReadPosRankSum=1.488;SB=-7.976e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:15:133,15,0 chrVIII 531177 . C T 422 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=2;QD=13.61;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:51:455,51,0 chrVIII 531272 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=15.72;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:662,75,0 chrVIII 531291 . A T 600 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=17.65;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:633,69,0 chrVIII 531324 . C T 160.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=2;QD=8.42;SB=-1.059e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:193,21,0 chrVIII 531327 . A G 153.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=19;Dels=0.00;FS=6.422;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=2;MQRankSum=-1.827;QD=8.06;ReadPosRankSum=2.583;SB=-1.019e+02 GT:AD:DP:GQ:PL 1/1:3,16:19:21:186,21,0 chrVIII 531343 . A C 49.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=2;QD=7.14;SB=-2.621e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:82,9,0 chrVIII 531421 . A T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.36;MQ0=5;QD=3.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,7:7:6:55,6,0 chrVIII 531453 . A G 131.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=2;QD=16.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:18:164,18,0 chrVIII 531519 . T G 410 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=9;QD=13.23;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:51:443,51,0 chrVIII 531584 . C T 381 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=10;QD=10.58;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:414,45,0 chrVIII 531622 . T C 313 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=39;Dels=0.00;FS=3.485;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=10;MQRankSum=0.060;QD=8.03;ReadPosRankSum=1.614;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:42:346,42,0 chrVIII 531748 . A C 288 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.62;MQ0=2;QD=19.20;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:39:321,39,0 chrVIII 531971 . G A 170.03 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.01;MQ0=9;QD=5.00;SB=-3.228e-02 GT:AD:DP:GQ:PL 1/1:0,34:34:24:203,24,0 chrVIII 532056 . T C 138.06 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=15.04;MQ0=8;QD=3.84;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:0,34:36:21:171,21,0 chrVIII 532120 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.07;MQ0=8;QD=3.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:9:73,9,0 chrVIII 532309 . A T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=3;QD=3.80;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:54,6,0 chrVIII 532379 . G A 189.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.38;MQ0=12;QD=9.00;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:222,24,0 chrVIII 532390 . C T 185.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.36;MQ0=11;QD=9.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:24:218,24,0 chrVIII 532397 . A G 152.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=12;QD=8.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:21:185,21,0 chrVIII 532437 . C T 77.51 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.41;MQ0=14;QD=4.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:12:110,12,0 chrVIII 532692 . C A 485 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=3;QD=16.72;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:518,60,0 chrVIII 532696 . A G 522 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=5;QD=16.84;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:555,63,0 chrVIII 532748 . A G 266 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=6;QD=12.67;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:299,36,0 chrVIII 532773 . C T 99.26 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=6;QD=8.27;SB=-4.930e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:132,15,0 chrVIII 532982 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.08;MQ0=19;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:6:51,6,0 chrVIII 533088 . T C 123.13 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=21;QD=4.25;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:1,28:29:18:156,18,0 chrVIII 533102 . A C 48.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.57;MQ0=21;QD=1.88;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:81,9,0 chrVIII 533103 . G A 47.97 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.57;MQ0=21;QD=1.85;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:80,9,0 chrVIII 540553 . T C 173.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=15.13;MQ0=23;MQRankSum=1.739;QD=2.84;ReadPosRankSum=-0.395;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,28:61:99:203,0,154 chrVIII 540582 . A G 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=15.11;MQ0=29;MQRankSum=-1.373;QD=1.63;ReadPosRankSum=0.012;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,39:73:99:149,0,238 chrVIII 540930 . C G 1548 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=3;QD=15.96;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1581,183,0 chrVIII 541011 . G A 2193 filter AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=21;QD=15.78;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2226,249,0 chrVIII 541209 . C T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;DP=66;Dels=0.00;FS=2.539;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=43;MQRankSum=0.902;QD=1.30;ReadPosRankSum=-0.434;SB=-7.803e-03 GT:AD:DP:GQ:PL 0/1:31,35:66:32:116,0,32 chrVIII 541236 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=15.09;MQ0=25;QD=0.92;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:0,49:49:9:77,9,0 chrVIII 541282 . T A 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=13.4616;MLEAC=1;MLEAF=0.500;MQ=17.80;MQ0=23;MQRankSum=-1.207;QD=0.85;ReadPosRankSum=3.037;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:38,28:66:59:86,0,59 chrVIII 541460 . A C 1375 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=105;Dels=0.00;FS=4.949;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=30;MQRankSum=1.409;QD=13.10;ReadPosRankSum=0.393;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1408,171,0 chrVIII 541624 . C A 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DP=82;Dels=0.00;FS=1.979;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=12.31;MQ0=44;MQRankSum=-0.990;QD=2.05;ReadPosRankSum=1.152;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,42:82:61:198,0,61 chrVIII 541671 . A G 808 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=15.41;MQ0=32;QD=7.55;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:841,99,0 chrVIII 541686 . C A 616 filter AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=33;QD=5.81;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:75:649,75,0 chrVIII 541706 . G A 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=14.78;MQ0=37;MQRankSum=0.421;QD=2.47;ReadPosRankSum=-0.924;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:54,50:104:99:287,0,266 chrVIII 541836 . T C 43.97 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=8.37;MQ0=62;QD=0.55;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:9:76,9,0 chrVIII 542260 . T C 121.13 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.84;MQ0=57;QD=1.62;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,74:75:18:154,18,0 chrVIII 542283 . C T 97.26 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.69;MQ0=50;QD=1.39;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,69:70:15:130,15,0 chrVIII 542292 . T C 150.06 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.49;MQ0=52;QD=1.95;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,77:77:21:183,21,0 chrVIII 542463 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.82;MQ0=33;MQRankSum=0.736;QD=0.56;ReadPosRankSum=0.736;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:19,20:39:6:53,6,0 chrVIII 550651 . T A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.78;MQ0=62;QD=0.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:6:52,6,0 chrVIII 551281 . G A 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=6.46;MQ0=60;MQRankSum=0.358;QD=0.16;ReadPosRankSum=1.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,31:65:18:40,0,18 chrVIII 551423 . A C 358 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.45;MQ0=57;QD=4.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:75:45:391,45,0 chrVIII 551439 . A T 350 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=55;QD=4.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:42:383,42,0 chrVIII 551514 . A G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;DP=58;Dels=0.00;FS=1.531;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=20;MQRankSum=0.172;QD=1.22;ReadPosRankSum=0.893;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:44,14:58:99:101,0,499 chrVIII 551523 . T C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=60;Dels=0.00;FS=3.353;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.30;MQ0=26;MQRankSum=-1.093;QD=1.23;ReadPosRankSum=0.586;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:42,17:60:99:104,0,481 chrVIII 551559 . G A 78.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=9.70;MQ0=39;MQRankSum=0.731;QD=1.78;ReadPosRankSum=-0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,26:44:12:111,12,0 chrVIII 551560 . A T 78.51 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=9.70;MQ0=39;QD=1.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:12:111,12,0 chrVIII 551739 . A G 196.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=72;Dels=0.00;FS=6.929;HaplotypeScore=16.1529;MLEAC=1;MLEAF=0.500;MQ=32.78;MQ0=6;MQRankSum=2.679;QD=2.72;ReadPosRankSum=2.262;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:38,33:72:99:226,0,307 chrVIII 551758 . A G 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.974;DP=76;Dels=0.00;FS=3.735;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=30.64;MQ0=15;MQRankSum=-1.643;QD=2.80;ReadPosRankSum=0.036;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:43,32:76:99:243,0,272 chrVIII 551999 . G A 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.87;MQ0=69;MQRankSum=-1.749;QD=0.93;ReadPosRankSum=0.825;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,30:80:75:104,0,75 chrVIII 552003 . C T 189.01 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.46;MQ0=61;QD=2.63;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,72:72:27:222,27,0 chrVIII 552022 . G A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=14.51;MQ0=39;MQRankSum=-1.237;QD=1.76;ReadPosRankSum=-1.945;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,14:54:71:125,0,71 chrVIII 552055 . G T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.63;MQ0=40;MQRankSum=-2.893;QD=1.30;ReadPosRankSum=2.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,13:60:99:108,0,165 chrVIII 552063 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.205;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.22;MQ0=42;MQRankSum=-2.270;QD=1.52;ReadPosRankSum=0.935;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,16:64:99:127,0,197 chrVIII 553052 . G A 68.51 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.97;MQ0=64;QD=0.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:12:101,12,0 chrVIII 553122 . C T 394 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=12;QD=7.04;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,55:56:48:427,48,0 chrVIII 553127 . C T 462 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.97;MQ0=11;QD=8.11;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:54:495,54,0 chrVIII 553136 . C T 475 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=9;QD=7.42;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:57:508,57,0 chrVIII 553158 . C A 550 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=6;QD=7.43;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,72:74:66:583,66,0 chrVIII 553172 . C T 481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=14;MQRankSum=2.034;QD=5.59;ReadPosRankSum=1.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,53:86:99:511,0,158 chrVIII 553301 . T A 911.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;DP=158;Dels=0.00;FS=0.716;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=47;MQRankSum=-1.720;QD=5.77;ReadPosRankSum=-1.242;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:75,83:158:99:941,0,872 chrVIII 553366 . G A 1769 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=31;QD=16.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1802,198,0 chrVIII 553543 . T A 6542.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=310;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=5;MQRankSum=0.971;QD=21.10;ReadPosRankSum=1.698;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:1,309:310:99:6542,726,0 chrVIII 553563 . A T 5898.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;DP=270;Dels=0.00;FS=15.078;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=1.195;QD=21.84;ReadPosRankSum=2.377;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,268:270:99:5898,651,0 chrVIII 553606 . A T 3106 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=18.60;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3139,345,0 chrVIII 553614 . C T 984.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DP=151;Dels=0.00;FS=20.774;HaplotypeScore=7.5554;MLEAC=1;MLEAF=0.500;MQ=42.14;MQ0=0;MQRankSum=-0.017;QD=6.52;ReadPosRankSum=0.784;SB=-3.720e+02 GT:AD:DP:GQ:PL 0/1:75,74:151:99:1014,0,1015 chrVIII 553644 . A G 2422 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=18.35;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2455,288,0 chrVIII 553671 . G A 1068.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;DP=139;Dels=0.00;FS=0.627;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=38.32;MQ0=0;MQRankSum=0.500;QD=7.68;ReadPosRankSum=0.087;SB=-5.510e+02 GT:AD:DP:GQ:PL 0/1:74,65:139:99:1098,0,1182 chrVIII 553704 . C G 1126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=37.50;MQ0=0;MQRankSum=-1.035;QD=8.04;ReadPosRankSum=-0.483;SB=-5.790e+02 GT:AD:DP:GQ:PL 0/1:73,66:140:99:1156,0,1207 chrVIII 553739 . G C 2999 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=21.27;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3032,357,0 chrVIII 553759 . A G 1165.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;DP=144;Dels=0.00;FS=3.106;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=43.09;MQ0=0;MQRankSum=0.466;QD=8.09;ReadPosRankSum=-0.094;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:74,70:144:99:1195,0,1200 chrVIII 553846 . A C 1610.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.795;DP=214;Dels=0.00;FS=2.371;HaplotypeScore=11.4886;MLEAC=1;MLEAF=0.500;MQ=54.08;MQ0=0;MQRankSum=0.051;QD=7.52;ReadPosRankSum=-0.750;SB=-3.700e+02 GT:AD:DP:GQ:PL 0/1:109,103:214:99:1640,0,1805 chrVIII 553869 . G C 1701.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;DP=235;Dels=0.00;FS=8.402;HaplotypeScore=18.3601;MLEAC=1;MLEAF=0.500;MQ=53.92;MQ0=0;MQRankSum=3.377;QD=7.24;ReadPosRankSum=0.404;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:122,113:235:99:1731,0,1821 chrVIII 553878 . T A 1675.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.165;DP=219;Dels=0.00;FS=1.564;HaplotypeScore=16.5799;MLEAC=1;MLEAF=0.500;MQ=53.98;MQ0=0;MQRankSum=1.013;QD=7.65;ReadPosRankSum=1.204;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:108,110:219:99:1705,0,1457 chrVIII 553912 . G C 2569 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=17.48;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2602,297,0 chrVIII 553913 . C A 1038.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.590;DP=146;Dels=0.00;FS=10.696;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=49.64;MQ0=0;MQRankSum=-0.131;QD=7.11;ReadPosRankSum=1.666;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:72,74:146:99:1068,0,912 chrVIII 553962 . G A 353.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.459;DP=75;Dels=0.00;FS=2.059;HaplotypeScore=7.3698;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=0.483;QD=4.71;ReadPosRankSum=-1.806;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:40,34:75:99:383,0,438 chrVIII 553968 . T C 385.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;DP=78;Dels=0.00;FS=1.982;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=39.08;MQ0=0;MQRankSum=0.466;QD=4.94;ReadPosRankSum=2.210;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:36,42:78:99:415,0,415 chrVIII 553971 . A T 387.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;DP=74;Dels=0.00;FS=0.929;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=0;MQRankSum=-1.199;QD=5.23;ReadPosRankSum=-2.337;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:40,34:74:99:417,0,433 chrVIII 553982 . T C 388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;DP=79;Dels=0.00;FS=2.020;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.83;MQ0=0;MQRankSum=1.369;QD=4.91;ReadPosRankSum=1.779;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:39,39:79:99:418,0,435 chrVIII 553991 . T G 350.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;DP=85;Dels=0.00;FS=2.032;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.80;MQ0=0;MQRankSum=-0.579;QD=4.12;ReadPosRankSum=0.544;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:47,38:85:99:380,0,541 chrVIII 554022 . G C 840 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=10.12;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:873,102,0 chrVIII 554028 . C T 781 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=8.68;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:96:814,96,0 chrVIII 554031 . C A 710 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=7.98;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:87:743,87,0 chrVIII 554038 . T G 627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=8.502;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;MQRankSum=-0.428;QD=7.38;ReadPosRankSum=1.691;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:78:660,78,0 chrVIII 554063 . A G 456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=391.9612;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=1.481;QD=6.42;ReadPosRankSum=1.682;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:60:489,60,0 chrVIII 554104 . T C 331 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=6.49;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:42:364,42,0 chrVIII 554135 . G A 463 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=13.62;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:496,54,0 chrVIII 554142 . G A 463 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=15.97;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:496,54,0 chrVIII 554143 . T A 450 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=15.52;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:483,54,0 chrVIII 554157 . T C 437 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=13.24;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:470,54,0 chrVIII 554162 . C T 521 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=13.6216;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=14.47;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:554,63,0 chrVIII 554170 . T C 508 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=5.682;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;MQRankSum=-1.171;QD=13.73;ReadPosRankSum=1.639;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:63:541,63,0 chrVIII 554171 . C T 542 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=5.798;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=0;MQRankSum=-1.277;QD=14.26;ReadPosRankSum=1.550;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:66:575,66,0 chrVIII 554202 . A G 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=0.247;QD=16.52;ReadPosRankSum=1.662;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:859,99,0 chrVIII 554280 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=3;QD=15.54;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1245,138,0 chrVIII 554298 . T A 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.039;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.4857;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=3;MQRankSum=-1.130;QD=16.22;ReadPosRankSum=2.391;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1460,162,0 chrVIII 554360 . T A 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=0.183;QD=18.21;ReadPosRankSum=3.248;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:4,97:101:99:1872,207,0 chrVIII 554362 . A T 1811 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=18.48;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1844,207,0 chrVIII 554434 . T C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=2;MQRankSum=-0.729;QD=16.65;ReadPosRankSum=1.687;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1332,156,0 chrVIII 554443 . C T 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=2;MQRankSum=-0.137;QD=17.36;ReadPosRankSum=0.247;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1179,135,0 chrVIII 554454 . C A 376.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=1;MLEAF=0.500;MQ=39.81;MQ0=2;MQRankSum=0.220;QD=6.06;ReadPosRankSum=-1.162;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:33,28:62:99:406,0,523 chrVIII 554464 . G A 484.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=39.81;MQ0=1;MQRankSum=-0.126;QD=8.34;ReadPosRankSum=0.294;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:23,35:58:99:514,0,351 chrVIII 554602 . T C 1287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=1;MLEAF=0.500;MQ=47.80;MQ0=3;MQRankSum=0.630;QD=9.53;ReadPosRankSum=2.808;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:62,73:135:99:1317,0,866 chrVIII 554632 . G C 1721.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.703;DP=167;Dels=0.00;FS=0.755;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=51.53;MQ0=1;MQRankSum=1.062;QD=10.31;ReadPosRankSum=-0.524;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:69,98:167:99:1751,0,1127 chrVIII 554740 . G A 928.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.456;DP=139;Dels=0.00;FS=4.229;HaplotypeScore=11.1195;MLEAC=1;MLEAF=0.500;MQ=43.73;MQ0=4;MQRankSum=1.156;QD=6.68;ReadPosRankSum=0.310;SB=-5.820e+02 GT:AD:DP:GQ:PL 0/1:70,65:139:99:958,0,896 chrVIII 554852 . A G 751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;DP=146;Dels=0.00;FS=1.415;HaplotypeScore=2.7697;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=14;MQRankSum=-7.976;QD=5.14;ReadPosRankSum=0.200;SB=-3.370e+02 GT:AD:DP:GQ:PL 0/1:79,67:146:99:781,0,1436 chrVIII 554853 . C A 775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.729;DP=146;Dels=0.00;FS=2.254;HaplotypeScore=3.5584;MLEAC=1;MLEAF=0.500;MQ=42.33;MQ0=14;MQRankSum=-8.068;QD=5.31;ReadPosRankSum=0.045;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:78,67:146:99:805,0,1331 chrVIII 554984 . T C 1017.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.642;DP=175;Dels=0.00;FS=0.602;HaplotypeScore=11.4598;MLEAC=1;MLEAF=0.500;MQ=44.01;MQ0=3;MQRankSum=0.294;QD=5.81;ReadPosRankSum=-0.869;SB=-3.840e+02 GT:AD:DP:GQ:PL 0/1:88,86:175:99:1047,0,1503 chrVIII 555074 . C A 1264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.127;DP=165;Dels=0.00;FS=5.780;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=45.85;MQ0=0;MQRankSum=0.091;QD=7.66;ReadPosRankSum=-0.553;SB=-6.540e+02 GT:AD:DP:GQ:PL 0/1:85,77:165:99:1294,0,1564 chrVIII 555085 . A G 1307.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;DP=175;Dels=0.00;FS=9.231;HaplotypeScore=8.8200;MLEAC=1;MLEAF=0.500;MQ=45.44;MQ0=1;MQRankSum=-0.668;QD=7.47;ReadPosRankSum=0.595;SB=-6.480e+02 GT:AD:DP:GQ:PL 0/1:93,81:175:99:1337,0,1672 chrVIII 555118 . A G 1911.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.995;DP=218;Dels=0.00;FS=6.711;HaplotypeScore=7.3361;MLEAC=1;MLEAF=0.500;MQ=43.31;MQ0=2;MQRankSum=0.388;QD=8.77;ReadPosRankSum=-0.246;SB=-1.000e+03 GT:AD:DP:GQ:PL 0/1:107,111:218:99:1941,0,1916 chrVIII 555208 . G C 3596.01 filter AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=10;QD=20.67;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3596,414,0 chrVIII 555254 . G C 1782.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.611;DP=193;Dels=0.00;FS=2.902;HaplotypeScore=9.7004;MLEAC=1;MLEAF=0.500;MQ=49.94;MQ0=1;MQRankSum=3.032;QD=9.23;ReadPosRankSum=-0.354;SB=-4.960e+02 GT:AD:DP:GQ:PL 0/1:91,100:193:99:1812,0,1193 chrVIII 555356 . G A 945.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.822;DP=175;Dels=0.00;FS=11.847;HaplotypeScore=8.7535;MLEAC=1;MLEAF=0.500;MQ=42.26;MQ0=3;MQRankSum=-2.862;QD=5.40;ReadPosRankSum=0.380;SB=-4.790e+02 GT:AD:DP:GQ:PL 0/1:80,94:175:99:975,0,1041 chrVIII 555454 . T C 2119 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=153;Dels=0.00;FS=18.881;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=20;MQRankSum=-0.765;QD=13.85;ReadPosRankSum=2.947;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:3,150:153:99:2152,252,0 chrVIII 555583 . T G 1038.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DP=212;Dels=0.00;FS=7.881;HaplotypeScore=8.7693;MLEAC=1;MLEAF=0.500;MQ=50.97;MQ0=0;MQRankSum=-2.605;QD=4.90;ReadPosRankSum=-0.228;SB=-5.110e+02 GT:AD:DP:GQ:PL 0/1:117,95:212:99:1068,0,1503 chrVIII 555586 . T C 1082.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;DP=222;Dels=0.00;FS=7.630;HaplotypeScore=12.8358;MLEAC=1;MLEAF=0.500;MQ=51.04;MQ0=0;MQRankSum=-2.212;QD=4.87;ReadPosRankSum=-0.499;SB=-4.950e+02 GT:AD:DP:GQ:PL 0/1:120,101:222:99:1112,0,1581 chrVIII 555637 . G A 485.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.693;DP=176;Dels=0.00;FS=5.588;HaplotypeScore=15.5497;MLEAC=1;MLEAF=0.500;MQ=43.36;MQ0=3;MQRankSum=-4.931;QD=2.76;ReadPosRankSum=-0.053;SB=-1.870e+02 GT:AD:DP:GQ:PL 0/1:90,86:176:99:515,0,1071 chrVIII 555652 . C T 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.689;DP=164;Dels=0.00;FS=4.935;HaplotypeScore=12.2588;MLEAC=1;MLEAF=0.500;MQ=38.69;MQ0=4;MQRankSum=-7.704;QD=1.51;ReadPosRankSum=-1.834;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:77,83:164:99:277,0,1043 chrVIII 555661 . C T 1010.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.128;DP=170;Dels=0.00;FS=8.626;HaplotypeScore=11.3578;MLEAC=1;MLEAF=0.500;MQ=36.60;MQ0=6;MQRankSum=7.600;QD=5.94;ReadPosRankSum=0.806;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:89,80:170:99:1040,0,281 chrVIII 555682 . C T 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DP=162;Dels=0.00;FS=6.000;HaplotypeScore=8.4652;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=7;MQRankSum=-7.372;QD=0.67;ReadPosRankSum=1.678;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:74,84:162:99:139,0,931 chrVIII 555700 . C G 275.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DP=149;Dels=0.00;FS=0.646;HaplotypeScore=7.3396;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=8;MQRankSum=-4.300;QD=1.85;ReadPosRankSum=-0.080;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:60,87:149:99:305,0,696 chrVIII 555736 . C T 434.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.346;DP=139;Dels=0.00;FS=5.319;HaplotypeScore=7.8453;MLEAC=1;MLEAF=0.500;MQ=30.81;MQ0=6;MQRankSum=-3.135;QD=3.12;ReadPosRankSum=0.888;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:65,73:139:99:464,0,763 chrVIII 555742 . A G 400.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070;DP=134;Dels=0.00;FS=12.950;HaplotypeScore=8.6340;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=6;MQRankSum=-3.187;QD=2.99;ReadPosRankSum=1.688;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:67,66:134:99:430,0,864 chrVIII 555748 . C T 1599 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=5;QD=12.30;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1632,183,0 chrVIII 555751 . C T 1546 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=3;QD=12.27;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:1579,177,0 chrVIII 555754 . T A 1525 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=3;QD=12.71;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1558,174,0 chrVIII 555760 . C T 381.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.595;DP=118;Dels=0.00;FS=10.180;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.69;MQ0=3;MQRankSum=-3.448;QD=3.23;ReadPosRankSum=-0.352;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:59,59:118:99:411,0,753 chrVIII 555840 . G A 453.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;DP=133;Dels=0.00;FS=0.686;HaplotypeScore=5.3022;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=0;MQRankSum=-1.506;QD=3.41;ReadPosRankSum=-0.958;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:85,48:133:99:483,0,1358 chrVIII 555849 . C G 2471 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=17.40;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2504,291,0 chrVIII 555856 . A G 1327.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.07;MQ0=0;MQRankSum=1.643;QD=8.73;ReadPosRankSum=1.577;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:61,91:152:99:1357,0,515 chrVIII 555860 . A G 549.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.182;DP=150;Dels=0.00;FS=0.631;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=0;MQRankSum=-1.127;QD=3.66;ReadPosRankSum=-0.034;SB=-3.290e+02 GT:AD:DP:GQ:PL 0/1:92,55:150:99:579,0,1541 chrVIII 555862 . T G 2549 SnpCluster AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=17.46;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2582,297,0 chrVIII 555971 . T A 2417 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=16.67;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2450,273,0 chrVIII 555993 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=13.61;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1557,177,0 chrVIII 556005 . T A 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=3.727;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;MQRankSum=1.243;QD=11.98;ReadPosRankSum=1.657;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1135,129,0 chrVIII 556025 . C T 239.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.390;DP=85;Dels=0.00;FS=15.150;HaplotypeScore=2.6722;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=0;MQRankSum=-0.594;QD=2.81;ReadPosRankSum=1.884;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:57,28:85:99:269,0,742 chrVIII 556042 . T C 311.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.519;DP=100;Dels=0.00;FS=15.679;HaplotypeScore=55.0198;MLEAC=1;MLEAF=0.500;MQ=30.07;MQ0=0;MQRankSum=0.318;QD=3.11;ReadPosRankSum=0.918;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,35:100:99:341,0,111 chrVIII 556053 . A G 538.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.299;DP=132;Dels=0.00;FS=13.366;HaplotypeScore=3.5086;MLEAC=1;MLEAF=0.500;MQ=36.18;MQ0=0;MQRankSum=1.886;QD=4.08;ReadPosRankSum=-1.443;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,51:132:99:568,0,1038 chrVIII 556076 . T A 1120.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DP=136;Dels=0.00;FS=29.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.45;MQ0=1;MQRankSum=-1.714;QD=8.24;ReadPosRankSum=1.696;SB=-4.170e+02 GT:AD:DP:GQ:PL 0/1:59,77:136:99:1150,0,713 chrVIII 556093 . T A 637.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;DP=134;Dels=0.01;FS=26.078;HaplotypeScore=23.2991;MLEAC=1;MLEAF=0.500;MQ=37.59;MQ0=1;MQRankSum=3.140;QD=4.75;ReadPosRankSum=1.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,52:133:99:667,0,1173 chrVIII 556094 . T A 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;DP=136;Dels=0.01;FS=28.925;HaplotypeScore=22.4050;MLEAC=1;MLEAF=0.500;MQ=37.59;MQ0=1;MQRankSum=4.098;QD=4.79;ReadPosRankSum=1.749;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,54:135:99:682,0,1111 chrVIII 556148 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=1;QD=10.86;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1097,129,0 chrVIII 556149 . G A 851.54 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.964;DP=97;Dels=0.00;FS=2.133;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=1;MQRankSum=5.442;QD=8.78;ReadPosRankSum=3.680;SB=-2.655e+02 GT:AD:DP:GQ:PL 1/1:31,66:97:4:882,4,0 chrVIII 556163 . G T 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.592;DP=107;Dels=0.00;FS=6.219;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;MQRankSum=6.073;QD=9.97;ReadPosRankSum=1.713;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:33,73:107:49:1100,49,0 chrVIII 556178 . A T 1015.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.886;DP=122;Dels=0.00;FS=58.137;HaplotypeScore=48.5428;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=1;MQRankSum=3.885;QD=8.32;ReadPosRankSum=5.765;SB=-3.061e+02 GT:AD:DP:GQ:PL 0/1:20,73:122:18:1045,0,18 chrVIII 556188 . A C 263.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590;DP=118;Dels=0.00;FS=8.992;HaplotypeScore=64.9699;MLEAC=1;MLEAF=0.500;MQ=32.44;MQ0=1;MQRankSum=-6.377;QD=2.23;ReadPosRankSum=1.127;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:67,51:118:99:293,0,949 chrVIII 556218 . T G 199.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=94;Dels=0.00;FS=97.179;HaplotypeScore=44.3912;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=1;MQRankSum=-3.340;QD=2.12;ReadPosRankSum=5.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,19:94:99:229,0,910 chrVIII 556221 . G A 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;DP=92;Dels=0.00;FS=6.559;HaplotypeScore=68.7164;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=1;MQRankSum=1.001;QD=2.49;ReadPosRankSum=-0.352;SB=-3.007e+00 GT:AD:DP:GQ:PL 0/1:65,26:92:99:259,0,861 chrVIII 556225 . A T 810.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;DP=89;Dels=0.00;FS=102.414;HaplotypeScore=73.6662;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=1;MQRankSum=3.753;QD=9.10;ReadPosRankSum=-5.237;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:22,67:89:99:840,0,240 chrVIII 556231 . T C 481.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DP=88;Dels=0.00;FS=45.236;HaplotypeScore=57.1727;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=1;MQRankSum=1.192;QD=5.47;ReadPosRankSum=0.926;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,40:88:99:511,0,313 chrVIII 556234 . T C 216.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.056;DP=88;Dels=0.00;FS=7.335;HaplotypeScore=53.3374;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=1;MQRankSum=-0.111;QD=2.45;ReadPosRankSum=-1.160;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:65,23:88:99:246,0,783 chrVIII 556247 . T G 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;DP=80;Dels=0.00;FS=125.059;HaplotypeScore=2.9748;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=1;MQRankSum=-4.619;QD=2.34;ReadPosRankSum=-2.129;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:62,18:80:99:217,0,773 chrVIII 556256 . T G 780.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.513;DP=75;Dels=0.00;FS=116.327;HaplotypeScore=8.5781;MLEAC=1;MLEAF=0.500;MQ=25.30;MQ0=1;MQRankSum=4.921;QD=10.40;ReadPosRankSum=4.009;SB=-2.202e+01 GT:AD:DP:GQ:PL 0/1:18,57:75:99:810,0,207 chrVIII 556264 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.5647;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=17.01;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1190,144,0 chrVIII 556273 . C G 911 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=16.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:944,111,0 chrVIII 556277 . C T 753.52 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;DP=59;Dels=0.00;FS=7.709;HaplotypeScore=3.9666;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=0;MQRankSum=3.081;QD=12.77;ReadPosRankSum=0.798;SB=-3.318e+00 GT:AD:DP:GQ:PL 0/1:10,49:59:6:783,0,6 chrVIII 556304 . G A 520 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=47;Dels=0.00;FS=11.663;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=3;MQRankSum=1.304;QD=11.06;ReadPosRankSum=1.164;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:6,41:47:63:553,63,0 chrVIII 556311 . G C 375 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=5;QD=10.42;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,34:36:48:408,48,0 chrVIII 556312 . A G 386 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.73;MQ0=5;QD=10.72;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:5,31:36:48:419,48,0 chrVIII 556387 . A T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.14;MQ0=0;QD=1.99;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:45,6,0 chrVIII 556420 . T G 322 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=13.4841;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=0;QD=10.06;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:42:355,42,0 chrVIII 556425 . G A 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=12.4925;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=0;MQRankSum=-1.999;QD=3.06;ReadPosRankSum=1.027;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,17:33:99:131,0,170 chrVIII 556430 . A G 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=11.6604;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=0;MQRankSum=3.437;QD=2.83;ReadPosRankSum=-3.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,8:35:99:129,0,203 chrVIII 556442 . C G 296 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=0;QD=6.58;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,21:45:39:329,39,0 chrVIII 556482 . C A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;DP=51;Dels=0.00;FS=23.714;HaplotypeScore=41.9773;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=0;MQRankSum=-1.653;QD=1.57;ReadPosRankSum=-2.298;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,16:51:99:110,0,459 chrVIII 556494 . A G 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;DP=39;Dels=0.00;FS=45.832;HaplotypeScore=25.5738;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=0;MQRankSum=-3.367;QD=1.97;ReadPosRankSum=2.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,18:39:99:107,0,365 chrVIII 556504 . A G 135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;DP=36;Dels=0.00;FS=58.374;HaplotypeScore=3.6095;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=0;MQRankSum=-3.263;QD=3.75;ReadPosRankSum=2.149;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:16,20:36:99:165,0,191 chrVIII 556548 . G A 59.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=9.542;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=0;MQRankSum=-0.751;QD=6.61;ReadPosRankSum=0.751;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:1,8:9:12:92,12,0 chrVIII 556555 . G A 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=4.71;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:65,9,0 chrVIII 556557 . A G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=9;Dels=0.00;FS=3.332;HaplotypeScore=3.7508;MLEAC=2;MLEAF=1.00;MQ=18.39;MQ0=0;MQRankSum=-1.067;QD=3.66;ReadPosRankSum=1.067;SB=-2.372e+01 GT:AD:DP:GQ:PL 1/1:3,6:9:9:65,9,0 chrVIII 556562 . C T 76.26 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=19.71;MQ0=0;QD=7.63;SB=-4.914e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:109,15,0 chrVIII 556574 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;DP=12;Dels=0.00;FS=28.987;HaplotypeScore=7.7282;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=0;MQRankSum=-1.000;QD=1.18;ReadPosRankSum=0.244;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:7,5:12:44:44,0,77 chrVIII 556575 . T C 109.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=9.3055;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;MQRankSum=-0.456;QD=7.80;ReadPosRankSum=2.100;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:2,12:14:18:142,18,0 chrVIII 556615 . C T 139.06 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=5.8042;MLEAC=2;MLEAF=1.00;MQ=21.91;MQ0=0;QD=10.70;SB=-4.306e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:172,21,0 chrVIII 556616 . A G 136.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.992;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=8.7767;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=0;MQRankSum=-1.488;QD=9.72;ReadPosRankSum=1.488;SB=-4.006e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:21:169,21,0 chrVIII 556625 . G C 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;DP=14;Dels=0.00;FS=2.963;HaplotypeScore=13.5815;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=0.533;QD=3.14;ReadPosRankSum=0.667;SB=-6.526e-03 GT:AD:DP:GQ:PL 0/1:9,5:14:55:74,0,55 chrVIII 556627 . C G 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;DP=14;Dels=0.00;FS=6.368;HaplotypeScore=12.5899;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=0;MQRankSum=0.421;QD=5.00;ReadPosRankSum=-0.299;SB=-1.338e-02 GT:AD:DP:GQ:PL 0/1:7,7:14:25:100,0,25 chrVIII 556648 . A G 105.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=6.5547;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=0;MQRankSum=0.278;QD=9.56;ReadPosRankSum=-1.769;SB=-1.913e+01 GT:AD:DP:GQ:PL 1/1:4,7:11:18:138,18,0 chrVIII 556808 . G A 49.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=-0.935;QD=3.84;ReadPosRankSum=-0.401;SB=-1.056e+02 GT:AD:DP:GQ:PL 1/1:1,12:13:9:82,9,0 chrVIII 556864 . G T 10.44 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;DP=39;Dels=0.03;FS=14.827;HaplotypeScore=33.2513;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=4;MQRankSum=-0.101;QD=0.27;ReadPosRankSum=-1.644;SB=-4.003e+01 GT:AD:DP:GQ:PL 0/1:30,8:38:19:40,0,19 chrX 126 . A G 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.39;MQ0=71;QD=0.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,73:74:6:51,6,0 chrX 15596 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.361;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=9.32;MQ0=44;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.876;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,30:55:6:53,6,0 chrX 15631 . T C 155.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.80;MQ0=46;MQRankSum=-0.045;QD=2.10;ReadPosRankSum=2.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,72:74:21:188,21,0 chrX 15647 . C T 257 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=11.39;MQ0=52;QD=2.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,87:87:33:290,33,0 chrX 15734 . C T 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.46;MQ0=77;MQRankSum=0.041;QD=0.50;ReadPosRankSum=-0.286;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,47:96:78:78,0,105 chrX 15824 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.75;MQ0=97;QD=0.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,101:101:6:53,6,0 chrX 15965 . T C 764 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=16.25;MQ0=44;MQRankSum=0.948;QD=7.88;ReadPosRankSum=1.536;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:90:797,90,0 chrX 15983 . G A 315.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=99;Dels=0.00;FS=1.985;HaplotypeScore=4.0734;MLEAC=1;MLEAF=0.500;MQ=18.71;MQ0=25;MQRankSum=0.440;QD=3.18;ReadPosRankSum=1.365;SB=-1.580e+02 GT:AD:DP:GQ:PL 0/1:60,37:99:99:345,0,530 chrX 16028 . A T 670.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DP=124;Dels=0.00;FS=1.443;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=3;MQRankSum=1.542;QD=5.40;ReadPosRankSum=-1.179;SB=-3.970e+02 GT:AD:DP:GQ:PL 0/1:63,61:124:99:700,0,748 chrX 16278 . C T 44.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.67;MQ0=5;QD=2.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:9:77,9,0 chrX 16280 . T C 40.97 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.67;MQ0=5;QD=2.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:9:73,9,0 chrX 16311 . G A 132.13 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.38;MQ0=13;QD=3.67;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,36:36:18:165,18,0 chrX 16325 . G A 257 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.84;MQ0=17;QD=5.04;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,51:51:33:290,33,0 chrX 16333 . C T 261 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=18;QD=4.83;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:33:294,33,0 chrX 16362 . C A 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=16.60;MQ0=20;MQRankSum=0.445;QD=1.45;ReadPosRankSum=-1.359;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,29:65:99:124,0,144 chrX 16424 . G T 81.51 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.03;MQ0=19;QD=2.04;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:114,12,0 chrX 16426 . C T 48.97 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.03;MQ0=19;QD=1.22;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:81,9,0 chrX 16436 . C A 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.19;MQ0=22;MQRankSum=2.223;QD=1.21;ReadPosRankSum=-0.953;SB=2.03 GT:AD:DP:GQ:PL 1/1:19,19:38:9:78,9,0 chrX 18544 . T C 12.31 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.59;MQ0=28;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.000;SB=0.036 GT:AD:DP:GQ:PL 0/1:2,32:34:17:42,0,17 chrX 18553 . A T 106.26 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.6834;MLEAC=2;MLEAF=1.00;MQ=11.13;MQ0=33;QD=2.66;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:2,38:40:15:139,15,0 chrX 18557 . C T 18.10 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=9.66;MQ0=38;MQRankSum=-0.720;QD=0.41;ReadPosRankSum=-0.720;SB=-3.366e-02 GT:AD:DP:GQ:PL 0/1:41,3:44:19:48,0,19 chrX 18791 . G C 576 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=22;QD=12.26;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:609,69,0 chrX 18898 . A G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;DP=41;Dels=0.00;FS=13.318;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=17;MQRankSum=-2.672;QD=0.32;ReadPosRankSum=-0.813;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,4:41:43:43,0,362 chrX 18900 . A G 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DP=39;Dels=0.00;FS=10.447;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=17;MQRankSum=-2.596;QD=0.46;ReadPosRankSum=-1.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,4:39:48:48,0,336 chrX 18906 . A G 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=39;Dels=0.00;FS=10.447;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=18;MQRankSum=-2.553;QD=0.39;ReadPosRankSum=-1.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,4:39:45:45,0,342 chrX 19239 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DP=30;Dels=0.00;FS=34.730;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=7;MQRankSum=-1.259;QD=0.35;ReadPosRankSum=-1.323;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:15,15:30:40:40,0,65 chrX 19679 . C T 925 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=6;QD=14.68;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:958,105,0 chrX 19709 . C A 356 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.08;MQ0=15;QD=7.74;SB=-5.500e+01 GT:AD:DP:GQ:PL 1/1:2,44:46:42:389,42,0 chrX 19871 . C A 468 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=69;Dels=0.00;FS=13.424;HaplotypeScore=2.7359;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=24;MQRankSum=0.578;QD=6.78;ReadPosRankSum=0.633;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:11,58:69:34:501,34,0 chrX 19946 . T C 767.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778;DP=101;Dels=0.00;FS=33.095;HaplotypeScore=5.0755;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=18;MQRankSum=-0.352;QD=7.59;ReadPosRankSum=0.090;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:16,85:101:39:797,0,39 chrX 19970 . T C 987.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DP=114;Dels=0.00;FS=20.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=20;MQRankSum=-1.276;QD=8.66;ReadPosRankSum=0.039;SB=-6.176e+02 GT:AD:DP:GQ:PL 1/1:14,100:114:2:1017,2,0 chrX 19988 . C T 879.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;DP=109;Dels=0.00;FS=18.018;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=17;MQRankSum=-1.193;QD=8.07;ReadPosRankSum=0.000;SB=-5.760e+02 GT:AD:DP:GQ:PL 0/1:17,92:109:3:909,0,3 chrX 19994 . C T 925.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DP=109;Dels=0.00;FS=14.598;HaplotypeScore=2.6912;MLEAC=1;MLEAF=0.500;MQ=24.80;MQ0=23;MQRankSum=-0.975;QD=8.49;ReadPosRankSum=-0.008;SB=-6.693e+02 GT:AD:DP:GQ:PL 0/1:19,90:109:8:955,0,8 chrX 20063 . T A 696 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=21;MQRankSum=-1.732;QD=10.09;ReadPosRankSum=0.650;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:7,62:69:56:729,56,0 chrX 20081 . A T 622 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=17;QD=11.96;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:69:655,69,0 chrX 20087 . A G 440 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.53;MQ0=16;QD=10.48;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:51:473,51,0 chrX 20118 . T G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.58;MQ0=13;MQRankSum=-1.739;QD=0.95;ReadPosRankSum=1.423;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,22:24:6:54,6,0 chrX 20177 . C T 67.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=15;Dels=0.00;FS=8.451;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=8;MQRankSum=0.742;QD=4.48;ReadPosRankSum=-0.742;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:4,11:15:12:97,0,12 chrX 20198 . C T 16.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=9;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=4;MQRankSum=0.731;QD=1.79;ReadPosRankSum=-0.731;SB=-1.276e+00 GT:AD:DP:GQ:PL 0/1:4,5:9:19:46,0,19 chrX 20240 . A G 69.51 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.89;MQ0=18;QD=2.17;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:8,22:32:12:102,12,0 chrX 20276 . T C 586.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.025;DP=86;Dels=0.00;FS=4.498;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=20;MQRankSum=-2.423;QD=6.81;ReadPosRankSum=2.423;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:30,56:86:99:616,0,331 chrX 20279 . G A 671.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;DP=95;Dels=0.00;FS=6.490;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=20;MQRankSum=-2.134;QD=7.06;ReadPosRankSum=1.007;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:30,65:95:99:701,0,325 chrX 20312 . T C 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.784;DP=128;Dels=0.00;FS=6.031;HaplotypeScore=22.8719;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=20;MQRankSum=1.342;QD=0.75;ReadPosRankSum=2.877;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:97,24:128:99:126,0,1395 chrX 20330 . C T 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;DP=122;Dels=0.00;FS=8.174;HaplotypeScore=28.7325;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=9;MQRankSum=0.496;QD=0.69;ReadPosRankSum=-2.093;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:103,18:122:99:114,0,1544 chrX 20708 . T A 635 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;DP=84;Dels=0.00;FS=2.265;HaplotypeScore=4.3444;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=30;MQRankSum=2.956;QD=7.56;ReadPosRankSum=0.050;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:28,56:84:33:668,33,0 chrX 20718 . T C 735 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.677;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=23;MQRankSum=2.805;QD=8.55;ReadPosRankSum=0.691;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:22,64:86:48:768,48,0 chrX 21359 . G A 639 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.97;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:672,81,0 chrX 21360 . A G 703 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.68;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:736,84,0 chrX 21430 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.46;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:669,72,0 chrX 21499 . C T 552 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.08;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:585,63,0 chrX 21540 . G A 762 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.54;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:795,87,0 chrX 21662 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1074,120,0 chrX 22158 . A T 2376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=107;Dels=0.00;FS=10.862;HaplotypeScore=7.2435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.817;QD=22.21;ReadPosRankSum=2.312;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2409,261,0 chrX 22679 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.04;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2314,252,0 chrX 22895 . T G 813 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:846,96,0 chrX 22897 . T C 889 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.76;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:922,102,0 chrX 22911 . A G 728 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=16.55;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:87:761,87,0 chrX 22914 . T C 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.106;QD=17.22;ReadPosRankSum=1.662;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:96:877,96,0 chrX 23258 . A C 1833 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.35;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1866,204,0 chrX 23550 . A C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.560;QD=16.35;ReadPosRankSum=1.630;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1161,129,0 chrX 23939 . A G 744 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=14.88;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:777,87,0 chrX 23956 . T C 753 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=14.76;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:786,87,0 chrX 23957 . A G 758 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=14.86;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:791,90,0 chrX 23965 . A T 774 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=14.33;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:807,87,0 chrX 23985 . A C 497 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.57;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:60:530,60,0 chrX 24002 . A G 593 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=10.98;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:626,72,0 chrX 24014 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=15.43;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1005,114,0 chrX 24026 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=16.43;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1134,123,0 chrX 24036 . G C 1209 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=15.70;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1242,138,0 chrX 24347 . C T 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.939;DP=134;Dels=0.00;FS=26.719;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=6.096;QD=19.51;ReadPosRankSum=4.418;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:28,105:134:99:2648,288,0 chrX 24374 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.35;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2332,246,0 chrX 24461 . C T 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.639;QD=21.16;ReadPosRankSum=1.498;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1641,180,0 chrX 24532 . G A 455.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.981;DP=152;Dels=0.00;FS=14.691;HaplotypeScore=25.6041;MLEAC=1;MLEAF=0.500;MQ=53.83;MQ0=0;MQRankSum=-8.512;QD=2.99;ReadPosRankSum=-0.601;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:112,38:152:99:485,0,2165 chrX 24610 . A G 872.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;DP=177;Dels=0.00;FS=19.494;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=45.28;MQ0=0;MQRankSum=-8.655;QD=4.93;ReadPosRankSum=-3.449;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:115,62:177:99:902,0,2180 chrX 24626 . A G 690.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.854;DP=165;Dels=0.00;FS=7.565;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=0;MQRankSum=-8.458;QD=4.18;ReadPosRankSum=-0.765;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:113,52:165:99:720,0,2154 chrX 24638 . G A 1685.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;DP=145;Dels=0.00;FS=1.494;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=43.18;MQ0=0;MQRankSum=7.076;QD=11.62;ReadPosRankSum=-1.719;SB=-1.028e+03 GT:AD:DP:GQ:PL 0/1:40,105:145:99:1715,0,511 chrX 24640 . T C 2597 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=142;Dels=0.00;FS=13.979;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-0.145;QD=18.29;ReadPosRankSum=3.395;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:4,135:142:99:2630,303,0 chrX 24647 . T A 2497 SnpCluster AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=17.96;SB=-1.779e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2530,288,0 chrX 24662 . T C 1513.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.692;DP=139;Dels=0.00;FS=13.255;HaplotypeScore=4.8046;MLEAC=1;MLEAF=0.500;MQ=46.12;MQ0=0;MQRankSum=7.362;QD=10.88;ReadPosRankSum=-2.433;SB=-9.200e+02 GT:AD:DP:GQ:PL 0/1:34,105:139:99:1543,0,409 chrX 24839 . A C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;DP=100;Dels=0.00;FS=12.842;HaplotypeScore=10.2963;MLEAC=1;MLEAF=0.500;MQ=54.76;MQ0=0;MQRankSum=-6.201;QD=0.46;ReadPosRankSum=0.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,16:100:76:76,0,1622 chrX 24857 . T G 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DP=107;Dels=0.00;FS=32.422;HaplotypeScore=11.9490;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=-7.165;QD=1.21;ReadPosRankSum=-0.158;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,22:107:99:159,0,1490 chrX 24873 . A G 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.809;DP=116;Dels=0.00;FS=40.856;HaplotypeScore=8.1817;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=-7.801;QD=1.63;ReadPosRankSum=0.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,27:116:99:219,0,1672 chrX 24887 . C T 286.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.079;DP=117;Dels=0.00;FS=43.477;HaplotypeScore=6.5409;MLEAC=1;MLEAF=0.500;MQ=52.99;MQ0=0;MQRankSum=-8.061;QD=2.44;ReadPosRankSum=0.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,30:117:99:316,0,1505 chrX 24908 . G A 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.374;DP=121;Dels=0.00;FS=55.868;HaplotypeScore=9.1261;MLEAC=1;MLEAF=0.500;MQ=51.27;MQ0=0;MQRankSum=-7.930;QD=2.87;ReadPosRankSum=0.614;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,33:121:99:377,0,1547 chrX 24926 . T C 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;DP=128;Dels=0.00;FS=65.982;HaplotypeScore=8.7707;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=0;MQRankSum=-8.063;QD=2.54;ReadPosRankSum=1.546;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,34:128:99:355,0,1826 chrX 24935 . G A 294.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.599;DP=119;Dels=0.00;FS=63.938;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=50.84;MQ0=0;MQRankSum=-7.573;QD=2.47;ReadPosRankSum=1.190;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,32:119:99:324,0,1706 chrX 24938 . G A 303.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.555;DP=120;Dels=0.00;FS=65.109;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-7.523;QD=2.53;ReadPosRankSum=1.402;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,31:120:99:333,0,1663 chrX 24944 . A C 215.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.856;DP=120;Dels=0.00;FS=64.599;HaplotypeScore=4.8820;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-8.034;QD=1.79;ReadPosRankSum=0.905;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,31:120:99:245,0,1800 chrX 24947 . A T 216.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;DP=116;Dels=0.00;FS=54.579;HaplotypeScore=8.8153;MLEAC=1;MLEAF=0.500;MQ=51.05;MQ0=0;MQRankSum=-6.881;QD=1.86;ReadPosRankSum=1.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,28:116:99:246,0,1710 chrX 24968 . G A 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;DP=102;Dels=0.00;FS=45.119;HaplotypeScore=7.2017;MLEAC=1;MLEAF=0.500;MQ=50.02;MQ0=0;MQRankSum=-5.816;QD=0.95;ReadPosRankSum=-1.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,26:102:99:127,0,1450 chrX 24971 . A G 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;DP=93;Dels=0.00;FS=29.260;HaplotypeScore=7.0869;MLEAC=1;MLEAF=0.500;MQ=49.55;MQ0=0;MQRankSum=-5.877;QD=0.49;ReadPosRankSum=-0.828;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,20:93:76:76,0,1381 chrX 24974 . A G 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=97;Dels=0.00;FS=25.976;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=-5.729;QD=0.44;ReadPosRankSum=-0.515;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,19:97:73:73,0,1331 chrX 25091 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=19.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1896,207,0 chrX 25099 . G A 1970 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=19.90;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2003,213,0 chrX 25103 . G A 1941 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.66;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1974,216,0 chrX 25106 . T C 1710 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=16.93;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1743,195,0 chrX 25259 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.58;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2143,228,0 chrX 25418 . A G 2315 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.6585;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.26;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2348,270,0 chrX 25469 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.53;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2045,225,0 chrX 25484 . A G 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-1.411;QD=19.19;ReadPosRankSum=1.636;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2106,234,0 chrX 25563 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.05;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2619,291,0 chrX 25569 . A T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.547;DP=136;Dels=0.00;FS=4.012;HaplotypeScore=11.0303;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=0;MQRankSum=-6.999;QD=0.27;ReadPosRankSum=-3.215;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,30:136:67:67,0,2066 chrX 25674 . T A 716.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;DP=180;Dels=0.00;FS=1.245;HaplotypeScore=12.1089;MLEAC=1;MLEAF=0.500;MQ=51.89;MQ0=0;MQRankSum=-9.776;QD=3.98;ReadPosRankSum=-2.699;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:120,60:180:99:746,0,2237 chrX 25720 . C T 3287.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.91;SB=-1.967e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:3287,354,0 chrX 25819 . C T 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.294;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.5360;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=2.193;QD=18.85;ReadPosRankSum=1.102;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2257,219,0 chrX 25910 . G T 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.856;DP=120;Dels=0.00;FS=57.293;HaplotypeScore=8.6791;MLEAC=1;MLEAF=0.500;MQ=54.96;MQ0=0;MQRankSum=-4.512;QD=0.35;ReadPosRankSum=1.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,16:120:72:72,0,1934 chrX 25916 . A G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.882;DP=121;Dels=0.00;FS=54.093;HaplotypeScore=7.8899;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-4.392;QD=0.64;ReadPosRankSum=0.877;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,19:121:99:108,0,1985 chrX 25919 . T C 1841.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DP=118;Dels=0.00;FS=41.297;HaplotypeScore=8.6786;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=5.432;QD=15.60;ReadPosRankSum=-0.232;SB=-7.460e+02 GT:AD:DP:GQ:PL 0/1:21,97:118:99:1871,0,141 chrX 25922 . G A 180.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DP=117;Dels=0.00;FS=37.218;HaplotypeScore=9.3437;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=-4.666;QD=1.54;ReadPosRankSum=0.134;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,22:117:99:210,0,1823 chrX 26027 . A G 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=135;Dels=0.00;FS=4.773;HaplotypeScore=4.9055;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=0;MQRankSum=-7.446;QD=0.90;ReadPosRankSum=0.190;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:110,25:135:99:152,0,2009 chrX 26030 . A G 131.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066;DP=140;Dels=0.00;FS=4.713;HaplotypeScore=5.8269;MLEAC=1;MLEAF=0.500;MQ=54.86;MQ0=0;MQRankSum=-7.724;QD=0.94;ReadPosRankSum=0.151;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:115,25:140:99:161,0,2168 chrX 26039 . G A 83.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.6735;MLEAC=1;MLEAF=0.500;MQ=54.44;MQ0=0;MQRankSum=-7.481;QD=0.64;ReadPosRankSum=-2.023;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:105,25:130:99:113,0,1880 chrX 26108 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4401;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=14.09;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1372,156,0 chrX 26191 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.87;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1702,183,0 chrX 26202 . T C 1504 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.49;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1537,177,0 chrX 26368 . G A 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=62;Dels=0.00;FS=5.333;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=3.307;QD=19.79;ReadPosRankSum=2.666;SB=-5.649e+02 GT:AD:DP:GQ:PL 1/1:4,58:62:99:1260,135,0 chrX 26412 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.39;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1231,138,0 chrX 26481 . A G 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.428;QD=17.49;ReadPosRankSum=1.550;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1030,111,0 chrX 26501 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.60;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:96:913,96,0 chrX 26666 . G T 902 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.98;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:935,102,0 chrX 26695 . A G 1244 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.21;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1277,141,0 chrX 26958 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1904,210,0 chrX 27126 . C T 1232.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.768;DP=177;Dels=0.00;FS=27.945;HaplotypeScore=13.2086;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=-0.257;QD=6.96;ReadPosRankSum=-0.621;SB=-2.740e+02 GT:AD:DP:GQ:PL 0/1:104,72:177:99:1262,0,1556 chrX 27210 . C T 1212.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.930;DP=171;Dels=0.00;FS=34.899;HaplotypeScore=21.0510;MLEAC=1;MLEAF=0.500;MQ=57.17;MQ0=0;MQRankSum=-1.066;QD=7.09;ReadPosRankSum=2.381;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:98,73:171:99:1242,0,1591 chrX 27318 . C T 1337.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;DP=186;Dels=0.00;FS=16.383;HaplotypeScore=12.1546;MLEAC=1;MLEAF=0.500;MQ=53.35;MQ0=0;MQRankSum=-5.837;QD=7.19;ReadPosRankSum=-0.393;SB=-8.730e+02 GT:AD:DP:GQ:PL 0/1:102,83:186:99:1367,0,1572 chrX 27330 . G A 3561.01 PASS AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=22.9659;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.41;SB=-1.882e+03 GT:AD:DP:GQ:PL 1/1:0,206:217:99:3561,393,0 chrX 27345 . C G 1404.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;DP=222;Dels=0.00;FS=8.688;HaplotypeScore=10.4017;MLEAC=1;MLEAF=0.500;MQ=53.63;MQ0=0;MQRankSum=-6.418;QD=6.32;ReadPosRankSum=2.183;SB=-9.080e+02 GT:AD:DP:GQ:PL 0/1:113,104:222:99:1434,0,1800 chrX 27429 . A T 2227.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;DP=255;Dels=0.00;FS=0.472;HaplotypeScore=15.3429;MLEAC=1;MLEAF=0.500;MQ=58.15;MQ0=0;MQRankSum=-1.568;QD=8.73;ReadPosRankSum=-0.811;SB=-9.080e+02 GT:AD:DP:GQ:PL 0/1:126,129:255:99:2257,0,2192 chrX 27507 . A T 1667.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.390;DP=202;Dels=0.00;FS=6.888;HaplotypeScore=23.6660;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=0.266;QD=8.25;ReadPosRankSum=-0.355;SB=-9.540e+02 GT:AD:DP:GQ:PL 0/1:102,100:202:99:1697,0,1744 chrX 27636 . T C 1353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;DP=223;Dels=0.00;FS=1.046;HaplotypeScore=32.5137;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-0.589;QD=6.07;ReadPosRankSum=-0.149;SB=-7.380e+02 GT:AD:DP:GQ:PL 0/1:123,97:223:99:1383,0,1981 chrX 27780 . T C 2312.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.628;DP=267;Dels=0.00;FS=7.936;HaplotypeScore=22.3667;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=-0.637;QD=8.66;ReadPosRankSum=0.540;SB=-1.226e+03 GT:AD:DP:GQ:PL 0/1:120,145:267:99:2342,0,1971 chrX 27840 . G A 1593.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.791;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=8.1860;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=0.622;QD=7.27;ReadPosRankSum=-1.091;SB=-1.001e+03 GT:AD:DP:GQ:PL 0/1:105,112:219:99:1623,0,1696 chrX 27843 . A G 1558.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520;DP=216;Dels=0.00;FS=3.066;HaplotypeScore=12.3196;MLEAC=1;MLEAF=0.500;MQ=54.58;MQ0=0;MQRankSum=-1.786;QD=7.21;ReadPosRankSum=-0.135;SB=-1.046e+03 GT:AD:DP:GQ:PL 0/1:108,108:216:99:1588,0,1854 chrX 27894 . G C 1542.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.205;DP=188;Dels=0.00;FS=5.255;HaplotypeScore=8.7001;MLEAC=1;MLEAF=0.500;MQ=55.66;MQ0=0;MQRankSum=1.679;QD=8.20;ReadPosRankSum=-0.079;SB=-1.001e+03 GT:AD:DP:GQ:PL 0/1:82,103:188:99:1572,0,1143 chrX 27906 . C A,T 3443.01 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.37;MQ0=0;QD=18.03;SB=-2.002e+03 GT:AD:DP:GQ:PL 1/2:0,88,103:191:99:3443,1803,1602,1641,0,1421 chrX 27942 . C T 1797.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.824;DP=191;Dels=0.00;FS=5.119;HaplotypeScore=12.8218;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=-0.477;QD=9.41;ReadPosRankSum=1.177;SB=-8.490e+02 GT:AD:DP:GQ:PL 0/1:96,93:191:99:1827,0,1293 chrX 28032 . T C 1559.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;DP=206;Dels=0.00;FS=3.149;HaplotypeScore=25.3733;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-1.205;QD=7.57;ReadPosRankSum=0.617;SB=-6.860e+02 GT:AD:DP:GQ:PL 0/1:104,101:206:99:1589,0,1712 chrX 28147 . G C 1004.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=9.1234;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-3.940;QD=6.24;ReadPosRankSum=1.367;SB=-4.460e+02 GT:AD:DP:GQ:PL 0/1:80,80:161:99:1034,0,1006 chrX 28161 . A G 1022.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.2906;MLEAC=1;MLEAF=0.500;MQ=53.53;MQ0=0;MQRankSum=-2.785;QD=5.94;ReadPosRankSum=0.081;SB=-5.110e+02 GT:AD:DP:GQ:PL 0/1:90,82:172:99:1052,0,1317 chrX 28178 . C T 2960 PASS AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=15.34;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,193:193:99:2993,327,0 chrX 28257 . A C 1004.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.318;DP=157;Dels=0.00;FS=37.150;HaplotypeScore=17.5539;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-2.468;QD=6.39;ReadPosRankSum=-0.289;SB=-2.990e+02 GT:AD:DP:GQ:PL 0/1:84,73:157:99:1034,0,1486 chrX 28302 . G C 993.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.647;DP=153;Dels=0.00;FS=26.424;HaplotypeScore=4.2720;MLEAC=1;MLEAF=0.500;MQ=55.86;MQ0=0;MQRankSum=0.140;QD=6.49;ReadPosRankSum=0.054;SB=-2.760e+02 GT:AD:DP:GQ:PL 0/1:78,74:153:99:1023,0,1293 chrX 28329 . C T 1168.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.735;DP=156;Dels=0.00;FS=12.369;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-2.885;QD=7.49;ReadPosRankSum=-0.637;SB=-3.180e+02 GT:AD:DP:GQ:PL 0/1:78,75:156:99:1198,0,1085 chrX 28380 . C T 814.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.788;DP=134;Dels=0.00;FS=7.996;HaplotypeScore=14.7661;MLEAC=1;MLEAF=0.500;MQ=55.11;MQ0=0;MQRankSum=-2.211;QD=6.07;ReadPosRankSum=0.307;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:68,65:134:99:844,0,921 chrX 28401 . G A 708.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.105;DP=123;Dels=0.00;FS=7.870;HaplotypeScore=10.1062;MLEAC=1;MLEAF=0.500;MQ=54.89;MQ0=0;MQRankSum=-4.072;QD=5.76;ReadPosRankSum=0.455;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/1:68,55:123:99:738,0,854 chrX 28422 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=16.83;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1901,210,0 chrX 28461 . A G 646.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;DP=109;Dels=0.00;FS=4.919;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=56.84;MQ0=0;MQRankSum=-0.748;QD=5.93;ReadPosRankSum=0.973;SB=-2.450e+02 GT:AD:DP:GQ:PL 0/1:68,41:109:99:676,0,1275 chrX 28530 . G A 476.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DP=90;Dels=0.00;FS=16.957;HaplotypeScore=11.4491;MLEAC=1;MLEAF=0.500;MQ=53.20;MQ0=0;MQRankSum=-4.970;QD=5.29;ReadPosRankSum=-0.614;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:54,36:90:99:506,0,1022 chrX 28548 . C T 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.525;DP=68;Dels=0.00;FS=25.588;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.79;MQ0=0;MQRankSum=-5.615;QD=4.18;ReadPosRankSum=0.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,24:68:99:314,0,857 chrX 28569 . G A 363.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;DP=84;Dels=0.00;FS=36.612;HaplotypeScore=8.2604;MLEAC=1;MLEAF=0.500;MQ=51.20;MQ0=0;MQRankSum=-7.182;QD=4.32;ReadPosRankSum=-0.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,28:84:99:393,0,929 chrX 28578 . C T 324.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.348;DP=96;Dels=0.00;FS=35.004;HaplotypeScore=6.4381;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-7.262;QD=3.38;ReadPosRankSum=0.852;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,27:96:99:354,0,1151 chrX 28581 . C T 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;DP=96;Dels=0.00;FS=17.848;HaplotypeScore=6.4381;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-6.873;QD=2.46;ReadPosRankSum=-0.968;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,30:96:99:266,0,1155 chrX 28593 . T C 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.828;DP=90;Dels=0.00;FS=36.802;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=-6.656;QD=1.37;ReadPosRankSum=-3.570;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,20:90:99:153,0,1346 chrX 28596 . G A 123.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.917;DP=89;Dels=0.00;FS=33.558;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=54.87;MQ0=0;MQRankSum=-6.501;QD=1.38;ReadPosRankSum=-4.142;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,18:89:99:153,0,1257 chrX 28599 . C T 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;DP=86;Dels=0.00;FS=33.724;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.98;MQ0=0;MQRankSum=-6.279;QD=0.99;ReadPosRankSum=-5.075;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,17:86:99:115,0,1361 chrX 28600 . G A 86.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DP=88;Dels=0.00;FS=30.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-6.352;QD=0.98;ReadPosRankSum=-4.936;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,17:88:99:116,0,1342 chrX 28602 . T C 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.086;DP=91;Dels=0.00;FS=30.114;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.27;MQ0=0;MQRankSum=-6.288;QD=0.75;ReadPosRankSum=-5.198;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,17:91:98:98,0,1460 chrX 28606 . A G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DP=92;Dels=0.00;FS=33.331;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=-6.247;QD=0.85;ReadPosRankSum=-6.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,17:92:99:108,0,1468 chrX 28824 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1440,162,0 chrX 28989 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.66;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1500,159,0 chrX 29066 . T C 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.127;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=10.7440;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.191;QD=20.05;ReadPosRankSum=2.362;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1717,192,0 chrX 29240 . C T 2093 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.27;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2126,231,0 chrX 29255 . A T 2257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.650;QD=23.51;ReadPosRankSum=1.696;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2290,246,0 chrX 29329 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.19;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1760,195,0 chrX 29538 . C G 1515 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2956;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.25;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:83:99:1548,171,0 chrX 29806 . A T 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=8.5360;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-0.777;QD=14.88;ReadPosRankSum=1.673;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:911,102,0 chrX 29815 . G T 916 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.96;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:949,105,0 chrX 29856 . G A 862 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.74;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:895,96,0 chrX 30116 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.44;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1005,111,0 chrX 30160 . G T 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.891;DP=57;Dels=0.00;FS=1.949;HaplotypeScore=3.9757;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=1.848;QD=18.56;ReadPosRankSum=3.512;SB=-6.155e+02 GT:AD:DP:GQ:PL 1/1:5,52:57:99:1091,120,0 chrX 30164 . T G 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.296;DP=57;Dels=0.00;FS=8.844;HaplotypeScore=3.9757;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.515;QD=18.93;ReadPosRankSum=2.796;SB=-6.369e+02 GT:AD:DP:GQ:PL 1/1:4,53:57:99:1112,126,0 chrX 30262 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.19;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1283,147,0 chrX 30273 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=19.42;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1237,144,0 chrX 30285 . T C 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;MQRankSum=0.427;QD=16.36;ReadPosRankSum=1.431;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1162,132,0 chrX 30288 . G T 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=0.148;QD=16.79;ReadPosRankSum=1.584;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1208,135,0 chrX 30332 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.32;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1059,120,0 chrX 30335 . T C 974 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.39;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1007,117,0 chrX 30542 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4575;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.41;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1445,156,0 chrX 30656 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=19.68;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1214,135,0 chrX 30667 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.02;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1250,144,0 chrX 30689 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.87;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1123,123,0 chrX 30701 . C A 1012 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.32;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1045,117,0 chrX 31045 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.98;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1484,168,0 chrX 31381 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.13;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1402,150,0 chrX 31450 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.62;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1568,174,0 chrX 31464 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.66;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1134,120,0 chrX 31505 . T C 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.757;DP=51;Dels=0.00;FS=7.981;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-1.535;QD=14.27;ReadPosRankSum=3.932;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:6,45:51:84:761,84,0 chrX 31756 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.71;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1835,204,0 chrX 31900 . A G 1845 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.23;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1878,210,0 chrX 31975 . T C 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.408;QD=18.96;ReadPosRankSum=1.681;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1322,144,0 chrX 32025 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.37;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1686,189,0 chrX 32051 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.01;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1630,183,0 chrX 32787 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.107;QD=22.22;ReadPosRankSum=1.684;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1633,180,0 chrX 32964 . A G 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=5.477;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.039;QD=22.08;ReadPosRankSum=1.675;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1358,147,0 chrX 33178 . A G 614 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.54;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:647,72,0 chrX 33525 . C G 814 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.42;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:847,96,0 chrX 33792 . A T 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.180;QD=24.35;ReadPosRankSum=1.682;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1713,189,0 chrX 34438 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1655,183,0 chrX 34681 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.99;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2132,237,0 chrX 35494 . G T 2093 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.32;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2126,231,0 chrX 35512 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.33;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1866,198,0 chrX 35524 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=6.163;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.427;QD=16.89;ReadPosRankSum=2.922;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1553,168,0 chrX 35623 . A C 1437 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=15.13;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1470,165,0 chrX 35625 . G A 1508 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=15.55;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1541,165,0 chrX 35632 . G A 1315 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=13.02;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1348,153,0 chrX 35680 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.60;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1670,186,0 chrX 36034 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.3150;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.89;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1790,198,0 chrX 36217 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.15;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1795,201,0 chrX 36357 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=14.16;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:911,105,0 chrX 36391 . G A 145.06 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=29.8688;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=2.01;SB=-8.651e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:21:178,21,0 chrX 36583 . A G 2890 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.6851;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.76;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2923,321,0 chrX 36688 . G C 2412 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.93;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2445,273,0 chrX 36818 . C G 3778.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.0766;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.37;SB=-2.040e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3778,420,0 chrX 37127 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=12.9386;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=15.05;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2276,258,0 chrX 37634 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.98;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1032,114,0 chrX 37849 . C G 1531 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=14.44;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1564,177,0 chrX 37925 . G C 1755 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.40;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1788,198,0 chrX 37938 . T G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.417;QD=20.29;ReadPosRankSum=1.688;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1636,183,0 chrX 38095 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=14.98;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:887,99,0 chrX 38099 . A T 859 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.34;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:892,96,0 chrX 38124 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.95;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1304,141,0 chrX 38155 . A G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=100;Dels=0.00;FS=5.958;HaplotypeScore=5.9979;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.340;QD=15.58;ReadPosRankSum=2.805;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:3,95:100:99:1591,183,0 chrX 38250 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2859;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.12;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1997,219,0 chrX 38382 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.97;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1501,177,0 chrX 38691 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.10;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1523,177,0 chrX 38964 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.61;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2068,225,0 chrX 39598 . A G 1884 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.43;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1917,210,0 chrX 39814 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2298,246,0 chrX 40239 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1896,213,0 chrX 41107 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.72;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1510,168,0 chrX 41268 . A C 2280 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.35;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2313,255,0 chrX 41577 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.99;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1872,207,0 chrX 41680 . C A 1613 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.63;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1646,177,0 chrX 41794 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.57;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1370,150,0 chrX 41803 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.80;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1330,147,0 chrX 42826 . A G 2105 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2138,237,0 chrX 43207 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.78;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2028,222,0 chrX 44257 . A C 1810 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.55;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1843,201,0 chrX 44626 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.34;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1932,204,0 chrX 44863 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.79;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1929,210,0 chrX 44980 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.153;QD=23.48;ReadPosRankSum=1.688;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1888,210,0 chrX 45197 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.05;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1797,198,0 chrX 45217 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.36;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2169,237,0 chrX 45922 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1648,183,0 chrX 46953 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.65;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1239,138,0 chrX 47059 . T C 819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.371;QD=14.62;ReadPosRankSum=1.114;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:80:852,80,0 chrX 47473 . T C 1676 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=19.05;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1709,189,0 chrX 48186 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1378,153,0 chrX 48515 . G C 1933 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.48;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1966,219,0 chrX 48799 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.89;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1962,216,0 chrX 49768 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.70;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2212,246,0 chrX 50434 . A G 1565 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.59;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1598,180,0 chrX 50613 . A C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=70;Dels=0.00;FS=7.801;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.563;QD=19.04;ReadPosRankSum=2.377;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,66:70:99:1366,153,0 chrX 50628 . T G 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.155;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.124;QD=19.10;ReadPosRankSum=2.376;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1313,147,0 chrX 51007 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.51;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1294,144,0 chrX 52660 . G T 1096 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.58;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1129,126,0 chrX 52757 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.29;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1989,213,0 chrX 52932 . T C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.395;QD=21.51;ReadPosRankSum=2.345;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1044,117,0 chrX 53177 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.0879;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.71;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1234,138,0 chrX 53312 . A G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=3.129;HaplotypeScore=4.8206;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.983;QD=21.44;ReadPosRankSum=1.685;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1641,183,0 chrX 53526 . T C 1791 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.11;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1824,207,0 chrX 53592 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0447;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=15.51;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1181,135,0 chrX 53771 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.82;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2511,270,0 chrX 53842 . A G 2437 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7939;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.13;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2470,276,0 chrX 53880 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.253;QD=23.12;ReadPosRankSum=1.690;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1929,216,0 chrX 54177 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.41;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2140,240,0 chrX 54420 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.97;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1615,180,0 chrX 54825 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.07;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1177,126,0 chrX 55276 . A T 1338 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1371,147,0 chrX 55335 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.62;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1571,171,0 chrX 55878 . T C 1834 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7882;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.52;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1867,207,0 chrX 56320 . G A 193.03 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.16;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:226,24,0 chrX 57144 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1194,132,0 chrX 57806 . T C 2291 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.5884;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.25;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2324,255,0 chrX 57860 . A G 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.740;HaplotypeScore=9.5017;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.196;QD=18.56;ReadPosRankSum=1.696;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1852,213,0 chrX 58028 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.87;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1320,144,0 chrX 58040 . A G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.688;QD=17.93;ReadPosRankSum=1.685;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1342,153,0 chrX 58082 . T C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.823;QD=14.62;ReadPosRankSum=1.689;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1203,138,0 chrX 58202 . C A 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1633;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.569;QD=22.45;ReadPosRankSum=-1.013;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2435,264,0 chrX 58706 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.86;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1389,159,0 chrX 58860 . C G 1128 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.56;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1161,129,0 chrX 59187 . T C 2020 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.44;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2053,237,0 chrX 59202 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.44;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1783,198,0 chrX 59236 . G C 1984 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.04;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2017,222,0 chrX 59557 . T A 2147 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.84;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2180,234,0 chrX 59791 . A C 3447.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=139;Dels=0.00;FS=4.354;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.660;QD=24.80;ReadPosRankSum=1.682;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3447,369,0 chrX 60161 . C A 3042 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.9086;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.27;SB=-1.855e+03 GT:AD:DP:GQ:PL 1/1:0,142:143:99:3075,333,0 chrX 60330 . G T 1998 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.78;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2031,222,0 chrX 60337 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=18.25;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1767,189,0 chrX 60361 . T C 1448 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.04;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1481,165,0 chrX 60675 . T A 1094 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=18.5956;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=15.86;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1127,123,0 chrX 60842 . T A 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.610;QD=23.21;ReadPosRankSum=1.683;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1681,180,0 chrX 60979 . T A 1510 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.41;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1543,165,0 chrX 61449 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=16.20;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1491,165,0 chrX 61680 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.55;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1615,174,0 chrX 61713 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.71;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1532,165,0 chrX 61736 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=18.46;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1122,123,0 chrX 61761 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=15.88;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:986,108,0 chrX 61785 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=10.17;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:57:521,57,0 chrX 61788 . C G 474 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=8.94;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:57:507,57,0 chrX 61803 . C T 446 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=8.75;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:54:479,54,0 chrX 61814 . G A 377 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=6.85;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:45:410,45,0 chrX 61827 . C T 567 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=9.30;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:66:600,66,0 chrX 61926 . T A 1265 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.17;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1298,144,0 chrX 61974 . A T 1538 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.24;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1571,171,0 chrX 61995 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.23;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1327,141,0 chrX 62016 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.087;QD=16.37;ReadPosRankSum=1.689;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1343,150,0 chrX 62065 . T C 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.718;QD=18.37;ReadPosRankSum=1.690;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1539,171,0 chrX 62571 . A G 2292 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.62;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2325,267,0 chrX 62857 . A G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.5700;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.079;QD=16.72;ReadPosRankSum=1.700;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,108:112:99:1906,213,0 chrX 62868 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1415;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=15.98;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1871,207,0 chrX 62971 . T C 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.666;QD=19.55;ReadPosRankSum=1.666;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2066,228,0 chrX 63189 . C T 2862 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.85;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2895,315,0 chrX 63405 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.27;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2182,237,0 chrX 63597 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.56;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1930,207,0 chrX 63736 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4962;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.35;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2246,243,0 chrX 64213 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.96;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2627,285,0 chrX 64389 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.37;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1700,195,0 chrX 64516 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.9062;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.018;QD=20.05;ReadPosRankSum=1.696;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1978,219,0 chrX 64596 . T A 1771 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1804,198,0 chrX 64951 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.1194;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.94;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1942,207,0 chrX 65076 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.39;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1909,210,0 chrX 65469 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1727,189,0 chrX 65790 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.36;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1665,183,0 chrX 66411 . A G 2288 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.58;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2321,258,0 chrX 67153 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.5292;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.564;QD=21.06;ReadPosRankSum=1.693;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1928,216,0 chrX 67353 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.27;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1628,174,0 chrX 67377 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.93;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,162,0 chrX 67380 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.04;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1350,147,0 chrX 67416 . A G 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.632;QD=16.84;ReadPosRankSum=1.622;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1094,123,0 chrX 67456 . A T 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.500;QD=20.36;ReadPosRankSum=1.655;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:949,102,0 chrX 67457 . A G 871 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.36;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:904,102,0 chrX 67631 . C A 1789 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1822,201,0 chrX 69503 . T C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.312;QD=19.40;ReadPosRankSum=1.680;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1333,150,0 chrX 69523 . G A 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=67;Dels=0.00;FS=3.748;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.271;QD=20.07;ReadPosRankSum=1.353;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1378,153,0 chrX 69580 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.08;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1426,156,0 chrX 69760 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4628;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.56;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1852,213,0 chrX 69806 . T C 1502 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.26;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1535,168,0 chrX 69814 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.25;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1365,156,0 chrX 70126 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.30;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1779,195,0 chrX 70147 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.95;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1487,162,0 chrX 70786 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.27;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:928,99,0 chrX 70825 . A G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.533;QD=19.85;ReadPosRankSum=1.666;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1065,117,0 chrX 71179 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.93;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1656,180,0 chrX 71182 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.78;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1457,165,0 chrX 71313 . G C 1166 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.81;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1199,138,0 chrX 71410 . A C 1797 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.72;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1830,207,0 chrX 71449 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.38;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1704,192,0 chrX 71701 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.95;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1435,159,0 chrX 72544 . G C 2163 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.66;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2196,243,0 chrX 72884 . A T 1177 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1210,129,0 chrX 73190 . G A 1538 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.96;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1571,168,0 chrX 73368 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.23;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1368,147,0 chrX 73391 . T C 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.156;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.734;QD=18.37;ReadPosRankSum=1.615;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1117,126,0 chrX 73580 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1397,156,0 chrX 73708 . C A 1620 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.82;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1653,177,0 chrX 73745 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.77;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1990,207,0 chrX 74010 . T A 1643 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.80;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1676,177,0 chrX 74077 . T C 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=101;Dels=0.00;FS=3.979;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.455;QD=21.00;ReadPosRankSum=1.663;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2154,240,0 chrX 74530 . G A 2421 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.54;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2454,261,0 chrX 74743 . A G 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.376;QD=18.97;ReadPosRankSum=1.681;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1323,147,0 chrX 74857 . T G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.113;QD=23.78;ReadPosRankSum=1.619;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2221,249,0 chrX 74905 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.80;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2381,252,0 chrX 75337 . A T 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=0.823;QD=21.11;ReadPosRankSum=1.689;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1722,183,0 chrX 75340 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=19.31;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1578,168,0 chrX 75366 . C G 1640 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.03;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1673,192,0 chrX 75559 . T A 1347 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.97;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1380,150,0 chrX 75669 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.79;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1322,144,0 chrX 75672 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.25;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1244,138,0 chrX 75699 . G A 667 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=15.16;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:700,81,0 chrX 75722 . T C 367 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=10.79;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:400,45,0 chrX 76676 . T C 551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.730;QD=14.50;ReadPosRankSum=1.550;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:69:584,69,0 chrX 76677 . T C 546 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.17;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:63:579,63,0 chrX 76747 . A G 609 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=17.40;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:642,75,0 chrX 76842 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=26.71;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1128,120,0 chrX 77004 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.60;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1912,207,0 chrX 77140 . T G 1963 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.11;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1996,219,0 chrX 77184 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.09;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1484,168,0 chrX 77203 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.55;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1323,147,0 chrX 77355 . A G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.0156;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.408;QD=16.51;ReadPosRankSum=1.700;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,106:110:99:1849,207,0 chrX 77571 . C T 1011 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.74;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1044,117,0 chrX 77583 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.56;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1069,123,0 chrX 78090 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1776,198,0 chrX 79319 . A G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.358;QD=17.04;ReadPosRankSum=1.685;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1328,147,0 chrX 79607 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=15.73;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1150,126,0 chrX 79642 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.77;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1516,168,0 chrX 79806 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=15.10;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:758,81,0 chrX 79812 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=14.85;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:716,75,0 chrX 79831 . T C 581 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=10.56;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:69:614,69,0 chrX 79835 . A C 521 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=10.02;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:554,60,0 chrX 79840 . T C 532 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=58;Dels=0.00;FS=2.674;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;MQRankSum=-1.342;QD=9.17;ReadPosRankSum=2.322;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:63:565,63,0 chrX 80055 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.65;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1488,162,0 chrX 80094 . A T 2061 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=23.16;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2094,225,0 chrX 80208 . A G 1608 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.44;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1641,183,0 chrX 80319 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6575;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.59;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1614,183,0 chrX 80358 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.16;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1505,162,0 chrX 80359 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.59;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1463,156,0 chrX 80604 . G A 2431 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.72;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2464,267,0 chrX 80649 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.36;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2254,252,0 chrX 80670 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.69;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2159,231,0 chrX 81387 . C A 1546 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.5693;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.37;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1579,168,0 chrX 81528 . G T 1772 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.60;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1805,195,0 chrX 81757 . G A 534 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=14.43;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:567,60,0 chrX 81758 . G A 528 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=14.27;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:561,60,0 chrX 82182 . A G 783 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.75;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:816,93,0 chrX 82254 . C A 852 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=17.75;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:885,96,0 chrX 82787 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7809;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.80;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1947,219,0 chrX 82809 . T C 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=99;Dels=0.00;FS=3.000;HaplotypeScore=9.3025;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.385;QD=19.62;ReadPosRankSum=0.211;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1975,222,0 chrX 82973 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.31;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1930,204,0 chrX 82983 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.31;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2003,213,0 chrX 83271 . G C 1461 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.29;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1494,165,0 chrX 83298 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=24.22;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1680,177,0 chrX 83621 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.41;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1510,165,0 chrX 83631 . T A 1312 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.58;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1345,147,0 chrX 83690 . T A 1136 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=14.95;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1169,129,0 chrX 83747 . A T 1989 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.13;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2022,222,0 chrX 83804 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.3949;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.25;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2814,303,0 chrX 83937 . T A 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.02;FS=3.050;HaplotypeScore=12.4599;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.065;QD=15.59;ReadPosRankSum=1.700;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1763,186,0 chrX 83967 . A G 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.837;HaplotypeScore=10.4475;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.115;QD=16.13;ReadPosRankSum=1.547;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1243,138,0 chrX 84373 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1590,177,0 chrX 84655 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.048;QD=21.68;ReadPosRankSum=1.684;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1637,183,0 chrX 84859 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.69;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2267,252,0 chrX 85456 . G A 289 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=6.42;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:36:322,36,0 chrX 85459 . A G 277 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=6.30;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:36:310,36,0 chrX 85483 . G T 447 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=7.84;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:51:480,51,0 chrX 85501 . G T 382 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=7.35;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:45:415,45,0 chrX 85607 . G C 573 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=13.33;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:72:606,72,0 chrX 85615 . T C 585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.648;QD=13.00;ReadPosRankSum=2.226;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,43:45:69:618,69,0 chrX 85628 . A G 478 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=12.58;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:57:511,57,0 chrX 85656 . T A 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.040;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=5.7594;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=0.520;QD=12.30;ReadPosRankSum=1.646;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:57:525,57,0 chrX 85714 . A T 1012 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=24.68;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:1045,111,0 chrX 86079 . T C 811 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.31;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:844,96,0 chrX 86090 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.98;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1032,114,0 chrX 86190 . T C 2069 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.70;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2102,240,0 chrX 86567 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.24;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2242,243,0 chrX 88584 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.16;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1547,174,0 chrX 88714 . T C 2296 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.19;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2329,267,0 chrX 88776 . T G 1289 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1322,147,0 chrX 88918 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.88;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1154,126,0 chrX 89050 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.27;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1087,114,0 chrX 89243 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:886,96,0 chrX 90197 . G C 1965 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.83;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1998,219,0 chrX 90273 . G T 1838 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.1009;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.20;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1871,201,0 chrX 90410 . G C 978 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.11;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1011,114,0 chrX 90432 . T A 777 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.54;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:810,87,0 chrX 90441 . C T 706 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=13.84;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:739,78,0 chrX 90473 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.6828;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=15.65;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1003,108,0 chrX 90680 . T G 1836 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3039;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.10;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1869,210,0 chrX 90723 . A T 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.01;FS=5.393;HaplotypeScore=4.3292;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.424;QD=20.70;ReadPosRankSum=1.694;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1937,207,0 chrX 90733 . T C 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.495;QD=18.82;ReadPosRankSum=2.369;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1783,204,0 chrX 91256 . G C 2052 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2085,231,0 chrX 92512 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.01;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1552,177,0 chrX 94118 . T C 2851 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.76;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2884,324,0 chrX 94327 . A G 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=145;Dels=0.00;FS=6.946;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.647;QD=18.81;ReadPosRankSum=2.381;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2761,315,0 chrX 95024 . C T 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3525;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.686;QD=21.00;ReadPosRankSum=1.594;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1608,171,0 chrX 95205 . T C 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.062;QD=22.99;ReadPosRankSum=1.701;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2608,294,0 chrX 95406 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.68;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2006,216,0 chrX 96194 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.58;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2014,216,0 chrX 96721 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.9857;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.41;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,109:112:99:1871,210,0 chrX 96768 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=17.29;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2298,249,0 chrX 96890 . G T 2894 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.72;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2927,312,0 chrX 96902 . A G 2693 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.54;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2726,318,0 chrX 97070 . T G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.783;QD=21.52;ReadPosRankSum=1.637;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1647,180,0 chrX 97478 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.18;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1475,165,0 chrX 97901 . A G 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.605;QD=17.87;ReadPosRankSum=1.690;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1516,168,0 chrX 98069 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.49;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1494,168,0 chrX 98106 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.11;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1979,213,0 chrX 98834 . A G 2855 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.620e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2888,327,0 chrX 99116 . G C 2304 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.04;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2337,258,0 chrX 102363 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.49;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1198,126,0 chrX 102424 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1616,174,0 chrX 102662 . A G 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=3.522;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.962;QD=18.62;ReadPosRankSum=1.677;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1225,138,0 chrX 103255 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.102;QD=21.15;ReadPosRankSum=1.680;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1471,162,0 chrX 103352 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.010;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.627;QD=23.09;ReadPosRankSum=-1.417;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1580,174,0 chrX 103477 . C T 1834 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.91;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1867,201,0 chrX 103478 . T C 1775 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.30;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1808,204,0 chrX 103601 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1544,174,0 chrX 104294 . T C 2244 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.22;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2277,252,0 chrX 104664 . G T 1648 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.27;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1681,180,0 chrX 105490 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.15;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2190,234,0 chrX 105643 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.31;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2303,255,0 chrX 105664 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=17.25;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2345,255,0 chrX 105718 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.76;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2147,231,0 chrX 105829 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.95;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2307,258,0 chrX 106326 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.98;MQ0=0;QD=21.07;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1192,132,0 chrX 106893 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=92;Dels=0.01;FS=2.602;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.300;QD=20.90;ReadPosRankSum=2.923;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1956,213,0 chrX 106919 . T G 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=22.77;ReadPosRankSum=1.678;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1536,168,0 chrX 106996 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.17;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1509,168,0 chrX 107092 . A G 2417 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2450,279,0 chrX 107239 . C T 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.947;QD=21.21;ReadPosRankSum=-0.993;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1624,154,0 chrX 107290 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1672,177,0 chrX 107485 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.83;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1910,213,0 chrX 108091 . A G 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.599;QD=17.31;ReadPosRankSum=1.688;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1383,156,0 chrX 108143 . A G 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.577;QD=16.81;ReadPosRankSum=1.682;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1193,132,0 chrX 108247 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.91;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1810,192,0 chrX 108259 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.17;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1687,183,0 chrX 108616 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.99;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1757,189,0 chrX 108688 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.29;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1433,159,0 chrX 108712 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.07;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1559,174,0 chrX 108722 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=17.87;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1552,168,0 chrX 108784 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=15.30;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1517,168,0 chrX 108920 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.51;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1797,198,0 chrX 108954 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.80;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1696,183,0 chrX 109158 . A G 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=82;Dels=0.00;FS=3.900;HaplotypeScore=6.2937;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.433;QD=20.91;ReadPosRankSum=1.647;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1748,198,0 chrX 110637 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1023,114,0 chrX 110925 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.32;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1483,162,0 chrX 111089 . T G 1079 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.98;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1112,126,0 chrX 112239 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1960;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.80;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2468,279,0 chrX 112473 . T C 2356 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2181;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2389,267,0 chrX 112731 . G A 2849 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.8116;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.99;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2882,312,0 chrX 112791 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.13;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2127,240,0 chrX 112938 . T A 2201 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.81;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2234,243,0 chrX 112965 . T C 2712 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.37;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2745,309,0 chrX 113505 . G A 350 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=11.29;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:383,42,0 chrX 113712 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=14.83;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:656,72,0 chrX 113716 . A G 596 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=14.90;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:629,69,0 chrX 113865 . G C 849 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.21;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:882,96,0 chrX 113871 . C G 874 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.32;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:907,96,0 chrX 113876 . G A 839 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.97;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:872,93,0 chrX 113899 . T C 660 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.33;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:693,81,0 chrX 113977 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.76;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1031,114,0 chrX 114524 . A T 1265 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.40;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1298,138,0 chrX 114637 . C G 1988 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.1434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.85;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2021,225,0 chrX 116020 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.32;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1191,129,0 chrX 116433 . C G 1702 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.12;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1735,192,0 chrX 117004 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=52;Dels=0.00;FS=3.100;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.955;QD=21.10;ReadPosRankSum=1.662;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,48:52:99:1130,129,0 chrX 117184 . G C 1528 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1561,174,0 chrX 117715 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1234,132,0 chrX 117792 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1231,132,0 chrX 118772 . A G 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3826;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.334;QD=20.56;ReadPosRankSum=1.692;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1822,201,0 chrX 118904 . G T 2412 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.8755;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=19.61;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2445,270,0 chrX 119064 . G T 1080 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=15.21;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1113,120,0 chrX 119092 . A C 945 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=13.70;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:978,108,0 chrX 119095 . A C 832 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=12.06;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:96:865,96,0 chrX 119101 . T C 853 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.73;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:886,96,0 chrX 119105 . A C 834 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=12.45;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:867,99,0 chrX 119112 . C T 755 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=12.80;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:788,87,0 chrX 119135 . A G 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-0.335;QD=18.69;ReadPosRankSum=1.676;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1192,135,0 chrX 119236 . T A 1989 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.16;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2022,222,0 chrX 119303 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.61;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1935,207,0 chrX 119345 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.693;QD=20.52;ReadPosRankSum=1.693;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1921,210,0 chrX 119574 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.06;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1215,129,0 chrX 119720 . A C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.118;QD=18.84;ReadPosRankSum=0.168;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1201,135,0 chrX 120106 . A T 1752 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.11;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1785,195,0 chrX 120196 . G T 1352 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.80;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1385,150,0 chrX 120373 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.014;QD=21.52;ReadPosRankSum=1.605;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1798,201,0 chrX 120394 . T C 2189 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.89;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2222,249,0 chrX 120505 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=23.43;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2259,246,0 chrX 120556 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=22.92;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1385,147,0 chrX 120754 . G A 1616 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.83;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1649,177,0 chrX 120814 . T C 65.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.733;DP=163;Dels=0.00;FS=3.354;HaplotypeScore=12.7243;MLEAC=1;MLEAF=0.500;MQ=51.94;MQ0=0;MQRankSum=-4.561;QD=0.40;ReadPosRankSum=-1.221;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:118,44:163:95:95,0,1861 chrX 120829 . T C 183.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.239;DP=161;Dels=0.00;FS=0.648;HaplotypeScore=8.7328;MLEAC=1;MLEAF=0.500;MQ=49.78;MQ0=0;MQRankSum=-0.956;QD=1.14;ReadPosRankSum=1.947;SB=-2.830e+02 GT:AD:DP:GQ:PL 0/1:109,52:161:99:213,0,1724 chrX 120868 . C T 475.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;DP=112;Dels=0.00;FS=4.608;HaplotypeScore=4.9350;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=-3.305;QD=4.24;ReadPosRankSum=1.778;SB=-3.560e+02 GT:AD:DP:GQ:PL 0/1:60,52:112:99:505,0,588 chrX 120874 . C T 1347 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=12.36;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1380,153,0 chrX 120877 . T C 1104 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=10.22;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1137,129,0 chrX 120887 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=103;Dels=0.00;FS=6.069;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-0.911;QD=11.37;ReadPosRankSum=2.892;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:3,99:103:99:1204,135,0 chrX 121066 . C T 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.390;DP=82;Dels=0.00;FS=3.403;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.535;QD=18.07;ReadPosRankSum=-1.604;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1515,168,0 chrX 121249 . T A 1732 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.62;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1765,204,0 chrX 121279 . C T 1874 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0855;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.37;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1907,210,0 chrX 121384 . T C 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=5.3516;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.635;QD=14.97;ReadPosRankSum=1.537;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1096,126,0 chrX 121516 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.42;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1328,147,0 chrX 121522 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=14.82;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1352,150,0 chrX 123151 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.26;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1285,141,0 chrX 123378 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=13.75;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:844,93,0 chrX 123394 . A G 567 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=10.12;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:66:600,66,0 chrX 123421 . A G 665 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=12.09;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:78:698,78,0 chrX 123440 . G T 489 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=10.40;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:57:522,57,0 chrX 123517 . G C 851 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.79;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:884,99,0 chrX 123535 . G T 775 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.87;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:808,87,0 chrX 124490 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.07;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1559,174,0 chrX 124553 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.94;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:77:99:1568,177,0 chrX 125246 . A G 2105 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.14;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2138,246,0 chrX 125687 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.2110;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.24;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2280,252,0 chrX 125702 . A G 2053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=113;Dels=0.00;FS=2.960;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.560;QD=18.17;ReadPosRankSum=2.384;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2086,234,0 chrX 125717 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.23;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2057,219,0 chrX 125897 . T G 1794 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.39;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1827,204,0 chrX 126262 . C T 787 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.30;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:820,87,0 chrX 126296 . T C 680 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.38;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:713,81,0 chrX 126339 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.64;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:90:862,90,0 chrX 126431 . A G 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.363;QD=21.14;ReadPosRankSum=1.652;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:942,105,0 chrX 126481 . T C 666 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:699,78,0 chrX 126526 . G C 870 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.17;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:903,102,0 chrX 126673 . G A 835 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.57;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:93:868,93,0 chrX 127474 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.05;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1570,168,0 chrX 127567 . A C 1692 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.56;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1725,192,0 chrX 127729 . G C 1376 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.84;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1409,162,0 chrX 127755 . C A 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.39;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1118,120,0 chrX 128296 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1914,204,0 chrX 128489 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.42;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1423,156,0 chrX 128573 . C T 1702 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.27;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1735,186,0 chrX 128794 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.9233;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.37;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1641,186,0 chrX 129184 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8836;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.55;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1343,144,0 chrX 129219 . A G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.529;QD=18.22;ReadPosRankSum=1.636;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1345,150,0 chrX 129833 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.96;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1087,120,0 chrX 129900 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.33;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1253,141,0 chrX 129954 . G A 1094 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=15.19;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1127,123,0 chrX 130023 . T G 2335 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.30;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2368,258,0 chrX 130065 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7756;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.05;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2159,237,0 chrX 130174 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.93;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:870,93,0 chrX 130179 . T C 574 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=14.72;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:607,69,0 chrX 130224 . A G 880 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-0.186;QD=15.71;ReadPosRankSum=1.670;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:913,105,0 chrX 130227 . C T 779 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=15.27;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:812,90,0 chrX 130230 . T C 786 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=16.37;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:819,90,0 chrX 130263 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.40;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1137,123,0 chrX 130774 . T A 2521 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=25.21;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2554,273,0 chrX 130800 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.44;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1908,213,0 chrX 130889 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.55;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1266,144,0 chrX 130946 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=23.86;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2133,237,0 chrX 131168 . C T 2462 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.59;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2495,270,0 chrX 131182 . T C 2220 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.75;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2253,258,0 chrX 131236 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=3.699;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=1.039;QD=16.05;ReadPosRankSum=1.686;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1269,138,0 chrX 131240 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=16.67;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1300,141,0 chrX 131250 . T A 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.494;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.276;QD=16.03;ReadPosRankSum=1.687;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1251,135,0 chrX 131266 . A T 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;MQRankSum=1.032;QD=13.82;ReadPosRankSum=1.693;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1263,138,0 chrX 131366 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.72;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2111,237,0 chrX 131653 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.01;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1805,192,0 chrX 131878 . A G 1684 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3144;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.36;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1717,189,0 chrX 131884 . T C 1603 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0132;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.591;QD=18.22;ReadPosRankSum=1.693;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1636,183,0 chrX 131886 . G A 1740 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6240;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.12;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1773,189,0 chrX 131968 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.37;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1666,189,0 chrX 132010 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.56;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1472,162,0 chrX 132022 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.05;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1176,132,0 chrX 132405 . C T 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DP=54;Dels=0.00;FS=4.938;HaplotypeScore=5.9789;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.340;QD=16.02;ReadPosRankSum=-0.425;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:898,99,0 chrX 133192 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2059,222,0 chrX 133342 . T C 2263 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.35;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2296,261,0 chrX 133354 . T C 2118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=2.592;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.083;QD=19.43;ReadPosRankSum=2.899;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2151,243,0 chrX 133624 . T A 1672 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.64;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1705,186,0 chrX 133771 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.92;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1507,165,0 chrX 133964 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=6.1774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=14.36;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:837,90,0 chrX 134085 . C T 432 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=12.71;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:51:465,51,0 chrX 134225 . C A 1092 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.22;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1125,120,0 chrX 134512 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.16;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1141,123,0 chrX 135166 . A G 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.299;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.700;QD=23.10;ReadPosRankSum=1.700;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2551,291,0 chrX 135448 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.13;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2083,228,0 chrX 135579 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.597;QD=18.91;ReadPosRankSum=1.651;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2472,279,0 chrX 135754 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.54;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2209,243,0 chrX 135793 . T G 2376 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.00;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2409,276,0 chrX 135809 . C T 2380 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.88;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2413,258,0 chrX 135988 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.35;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1556,174,0 chrX 135996 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.69;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1491,165,0 chrX 136071 . A G 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=2.623;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.185;QD=19.07;ReadPosRankSum=2.376;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1940,219,0 chrX 136195 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4639;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.22;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2832,303,0 chrX 136225 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=2.052;QD=19.44;ReadPosRankSum=1.679;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,97:101:99:1996,228,0 chrX 136623 . A C 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.020;QD=20.55;ReadPosRankSum=1.692;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1821,207,0 chrX 136648 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.15;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1726,192,0 chrX 136933 . A G 283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=16.1802;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-2.490;QD=6.90;ReadPosRankSum=1.624;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:4,36:40:39:316,39,0 chrX 137367 . T C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=105;Dels=0.00;FS=6.317;HaplotypeScore=9.0703;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.504;QD=21.51;ReadPosRankSum=2.356;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2292,258,0 chrX 137481 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.66;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2095,237,0 chrX 137522 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1612,174,0 chrX 137712 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.80;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2148,234,0 chrX 137767 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.74;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1982,219,0 chrX 137840 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,110:114:99:2597,285,0 chrX 138164 . A G 1955 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.75;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1988,222,0 chrX 138350 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.36;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1101,123,0 chrX 138413 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1438,153,0 chrX 139013 . T C 2218 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.92;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2251,249,0 chrX 139088 . A G 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.538;QD=18.72;ReadPosRankSum=1.693;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1699,186,0 chrX 139436 . T A 893 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.14;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:926,99,0 chrX 139438 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.14;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:963,102,0 chrX 139505 . A G 335 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.63;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,18:19:42:368,42,0 chrX 139563 . C T 683 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.77;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:78:716,78,0 chrX 139713 . T C 831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.545;QD=22.46;ReadPosRankSum=1.639;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:96:864,96,0 chrX 139819 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.521;QD=20.20;ReadPosRankSum=1.690;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1689,195,0 chrX 140130 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.86;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1205,132,0 chrX 140297 . C A 979 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.47;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1012,108,0 chrX 140646 . G A 867 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.21;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:900,99,0 chrX 140649 . T A 1028 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.13;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1061,117,0 chrX 140994 . T G 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.02;FS=3.536;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.548;QD=18.93;ReadPosRankSum=1.688;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1566,180,0 chrX 141042 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.41;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2360,264,0 chrX 141078 . G A 2383 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.7724;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.37;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2416,258,0 chrX 141083 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=9.9272;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=17.94;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2222,240,0 chrX 141376 . T C 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=88;Dels=0.00;FS=4.329;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.320;QD=17.31;ReadPosRankSum=1.691;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,83:88:99:1556,171,0 chrX 141409 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.34;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1867,207,0 chrX 141542 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=23.35;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2485,261,0 chrX 141656 . G T 1325 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.20;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1358,150,0 chrX 141743 . A G 2297 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.52;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2330,258,0 chrX 141865 . C T 3279.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=25.22;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3279,357,0 chrX 141900 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=19.95;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1988,219,0 chrX 141908 . A C 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=4.446;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;MQRankSum=-1.564;QD=16.09;ReadPosRankSum=1.698;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1706,192,0 chrX 141924 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=17.30;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1711,186,0 chrX 141977 . A C 1524 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=17.12;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1557,174,0 chrX 142022 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.91;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1455,156,0 chrX 142168 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.81;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1776,195,0 chrX 142223 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=18.40;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1505,171,0 chrX 142256 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=20.59;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1577,174,0 chrX 142259 . G C 1398 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=18.16;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1431,168,0 chrX 142307 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=17.58;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1404,159,0 chrX 142585 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=15.01;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1054,111,0 chrX 142589 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=14.19;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:998,111,0 chrX 142603 . C T 884 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=13.19;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:917,102,0 chrX 142635 . A G 591 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=9.38;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:69:624,69,0 chrX 142640 . C T 561 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.21;MQ0=0;QD=9.20;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:63:594,63,0 chrX 142653 . T C 509 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=9.25;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:542,60,0 chrX 142665 . C A 476 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=10.35;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:57:509,57,0 chrX 142749 . T A 2237 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.06;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2270,249,0 chrX 142775 . C T 2060 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.90;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2093,231,0 chrX 142782 . A G 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-1.667;QD=18.20;ReadPosRankSum=1.700;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1980,225,0 chrX 143026 . T A 828 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9543;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=17.62;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:861,93,0 chrX 143033 . G C 711 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.34;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:84:744,84,0 chrX 143163 . G A 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3937;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.538;QD=17.32;ReadPosRankSum=1.613;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1540,168,0 chrX 143166 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.43;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1544,168,0 chrX 143498 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.61;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1595,171,0 chrX 144131 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.593;QD=14.30;ReadPosRankSum=1.685;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1077,120,0 chrX 144137 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.70;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1269,138,0 chrX 144344 . T C 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.490;QD=20.45;ReadPosRankSum=2.357;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1117,123,0 chrX 144368 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.83;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1238,135,0 chrX 144558 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.39;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1460,162,0 chrX 144890 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.38;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1551,165,0 chrX 144958 . G T 1817 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.23;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1850,201,0 chrX 145172 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.97;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1899,219,0 chrX 145341 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1604,171,0 chrX 145720 . T C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=8.101;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.711;QD=19.37;ReadPosRankSum=2.387;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1544,174,0 chrX 145879 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1222,138,0 chrX 146059 . C G 1887 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.94;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1920,213,0 chrX 146367 . G A 1381 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.9164;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=11.51;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1414,150,0 chrX 146369 . G A 1319 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9031;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=11.47;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1352,147,0 chrX 146376 . T C 1306 SnpCluster AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.8323;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=10.97;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1339,147,0 chrX 146388 . C T 959 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=7.55;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:992,111,0 chrX 146394 . A G 917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.845;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-0.277;QD=7.64;ReadPosRankSum=1.703;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:950,108,0 chrX 146412 . T C 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.971;DP=132;Dels=0.00;FS=7.475;HaplotypeScore=12.8206;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;MQRankSum=-2.737;QD=9.50;ReadPosRankSum=4.124;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:6,126:132:99:1287,144,0 chrX 146535 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.38;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2278,243,0 chrX 146580 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.50;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1714,186,0 chrX 146598 . T A 1328 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.82;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1361,147,0 chrX 146738 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=18.40;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1597,174,0 chrX 146965 . C A 1197 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.29;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1230,129,0 chrX 147014 . G T 780 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=14.18;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:813,87,0 chrX 147017 . C T 732 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=11.09;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:84:765,84,0 chrX 147143 . C T 2419 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.19;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2452,258,0 chrX 147565 . T A 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.155;QD=18.40;ReadPosRankSum=1.704;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2296,249,0 chrX 147612 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.232;QD=19.76;ReadPosRankSum=1.696;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,96:102:99:2049,225,0 chrX 147613 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.53;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2004,222,0 chrX 147768 . C T 3016 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3468;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.54;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3049,327,0 chrX 147787 . A G 2864 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.31;SB=-1.693e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2897,324,0 chrX 147794 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.80;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2646,291,0 chrX 147905 . T G 2366 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0025;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.22;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2399,273,0 chrX 148061 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.17;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1988,219,0 chrX 148152 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.26;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1310,147,0 chrX 148168 . G C 1053 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=15.49;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1086,123,0 chrX 148288 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.62;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1263,135,0 chrX 148549 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.462;QD=19.74;ReadPosRankSum=1.029;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1316,144,0 chrX 148569 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.52;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1458,156,0 chrX 149085 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.66;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2004,225,0 chrX 149152 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1515,165,0 chrX 149212 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.03;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1553,171,0 chrX 149570 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.11;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1662,183,0 chrX 149941 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.54;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1967,228,0 chrX 150163 . C T 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.447;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.284;QD=19.28;ReadPosRankSum=1.990;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:1807,175,0 chrX 150482 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.30;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1261,141,0 chrX 150485 . T A 1254 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.42;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1287,135,0 chrX 150688 . C T 511 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.62;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:57:544,57,0 chrX 151350 . A G 2648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.944;QD=21.53;ReadPosRankSum=1.704;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2681,294,0 chrX 151705 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.38;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1480,162,0 chrX 152475 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.23;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2056,228,0 chrX 152784 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1579,171,0 chrX 153043 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1570,168,0 chrX 153134 . A G 373 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.54;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,23:24:45:406,45,0 chrX 153377 . A C 1186 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=22.81;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:99:1219,138,0 chrX 153819 . A G 370 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=1;QD=14.80;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:45:403,45,0 chrX 154335 . G A 1057 filter AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=20.95;MQ0=57;QD=9.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,79:108:99:1090,123,0 chrX 154973 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.82;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1074,126,0 chrX 154996 . G T 1430 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.34;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1463,156,0 chrX 155081 . T C 1730 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3650;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.84;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1763,195,0 chrX 155175 . T G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.785;QD=21.10;ReadPosRankSum=2.204;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2164,240,0 chrX 155396 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.18;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1251,138,0 chrX 155456 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.5964;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.41;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2094,228,0 chrX 155585 . A G 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=3.393;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.523;QD=20.33;ReadPosRankSum=1.690;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1761,201,0 chrX 155930 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.21;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1670,186,0 chrX 155973 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.02;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1755,186,0 chrX 155999 . G A 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=96;Dels=0.00;FS=5.740;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.039;QD=20.82;ReadPosRankSum=0.962;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,91:96:99:2032,216,0 chrX 156360 . A C 1445 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=16.61;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1478,162,0 chrX 156400 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2918;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=13.76;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1725,186,0 chrX 156493 . A T 834 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.95;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:867,93,0 chrX 156505 . T C 738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=-0.520;QD=14.76;ReadPosRankSum=2.352;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:87:771,87,0 chrX 156530 . T C 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=-0.894;QD=15.32;ReadPosRankSum=1.676;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:983,111,0 chrX 157220 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.46;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1565,174,0 chrX 157299 . T C 2240 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.93;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2273,255,0 chrX 157380 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.02;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2081,225,0 chrX 157408 . A G 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=70;Dels=0.00;FS=15.508;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.483;QD=16.87;ReadPosRankSum=2.379;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1214,135,0 chrX 157409 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.51;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1292,138,0 chrX 157487 . A G 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=7.361;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.297;QD=19.47;ReadPosRankSum=2.203;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1201,138,0 chrX 157517 . G C 1521 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.11;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1554,174,0 chrX 157602 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.55;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1865,207,0 chrX 157619 . A T 1747 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.31;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1780,198,0 chrX 157691 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.98;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1267,141,0 chrX 157695 . G T 1360 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.30;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1393,150,0 chrX 158168 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.94;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1639,174,0 chrX 158376 . A G 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.305;HaplotypeScore=4.4962;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.554;QD=21.20;ReadPosRankSum=1.554;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2111,243,0 chrX 158913 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.25;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1939,210,0 chrX 159076 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=17.27;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:931,99,0 chrX 159102 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9290;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=15.48;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:838,93,0 chrX 159105 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8625;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=16.12;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:871,96,0 chrX 159120 . A G 463 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.5100;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=11.29;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:1,39:41:57:496,57,0 chrX 159124 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4595;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=10.98;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:60:538,60,0 chrX 159135 . G T 675 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.06;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:708,75,0 chrX 159201 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.95;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1128,126,0 chrX 159443 . T A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;DP=57;Dels=0.00;FS=33.950;HaplotypeScore=6.7713;MLEAC=1;MLEAF=0.500;MQ=48.64;MQ0=1;MQRankSum=1.206;QD=0.40;ReadPosRankSum=-3.115;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,8:57:53:53,0,260 chrX 159754 . T C 706 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.06;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:739,84,0 chrX 159830 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.07;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1280,141,0 chrX 160138 . A C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DP=54;Dels=0.00;FS=17.283;HaplotypeScore=39.6845;MLEAC=1;MLEAF=0.500;MQ=46.13;MQ0=0;MQRankSum=2.447;QD=0.23;ReadPosRankSum=-4.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,8:54:42:42,0,425 chrX 160173 . C A 479 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=53.9804;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;QD=7.98;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:57:512,57,0 chrX 160189 . A G 399 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.33;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:48:432,48,0 chrX 160190 . A T 426 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.76;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:48:459,48,0 chrX 160222 . T C 680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;MQRankSum=-1.206;QD=8.61;ReadPosRankSum=1.688;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:81:713,81,0 chrX 160223 . C A 717 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=8.54;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:81:750,81,0 chrX 160251 . T A 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=0.286;QD=11.25;ReadPosRankSum=1.694;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1057,114,0 chrX 161023 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.7511;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.24;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2265,252,0 chrX 161596 . A G 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.661;QD=20.77;ReadPosRankSum=1.661;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2048,234,0 chrX 162243 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=3.022;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.300;QD=18.58;ReadPosRankSum=2.390;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1575,177,0 chrX 162452 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8058;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.72;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1964,219,0 chrX 162522 . C A 1770 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.29;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1803,195,0 chrX 162714 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.04;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2074,234,0 chrX 162765 . C A 1926 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.49;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1959,210,0 chrX 162863 . C T 2267 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.06;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2300,252,0 chrX 162881 . G T 2235 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.32;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2268,252,0 chrX 162922 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.19;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1674,183,0 chrX 162924 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=14.97;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1665,186,0 chrX 163105 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7440;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.76;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2405,255,0 chrX 163140 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.20;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1992,222,0 chrX 163580 . T C 1893 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.09;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1926,213,0 chrX 163830 . A C 2194 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:2227,243,0 chrX 163998 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.796;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.639;QD=21.09;ReadPosRankSum=1.358;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1615,158,0 chrX 164112 . T C 981 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1014,114,0 chrX 164155 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=6.8498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1496,159,0 chrX 164308 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.37;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2748,294,0 chrX 164772 . A G 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.260;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.595;QD=22.39;ReadPosRankSum=1.678;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1466,162,0 chrX 164955 . C G 1406 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.53;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1439,156,0 chrX 165244 . T C 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=78;Dels=0.00;FS=6.782;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-2.102;QD=19.28;ReadPosRankSum=2.323;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1537,174,0 chrX 165369 . C G 1271 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1304,147,0 chrX 166242 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=15.3587;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.07;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2442,261,0 chrX 166362 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.074;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.4199;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.873;QD=22.73;ReadPosRankSum=2.324;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2692,297,0 chrX 166575 . T C 2168 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.02;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2201,249,0 chrX 166589 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.29;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2290,252,0 chrX 166814 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.62;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1621,180,0 chrX 166911 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.37;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1459,162,0 chrX 167196 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.83;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2869,312,0 chrX 167286 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.70;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2757,297,0 chrX 167289 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=22.42;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2701,297,0 chrX 167364 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.65;SB=-1.764e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2686,291,0 chrX 167370 . G A 2630 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.52;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2663,291,0 chrX 167814 . C T 2582 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.02;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2615,282,0 chrX 167997 . C A 1792 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1825,195,0 chrX 168672 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.68;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2163,246,0 chrX 168888 . T C 2972 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.54;SB=-1.803e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3005,327,0 chrX 169122 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.40;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1682,192,0 chrX 170079 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.56;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1822,204,0 chrX 170274 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=129;Dels=0.00;FS=7.775;HaplotypeScore=7.4930;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.734;QD=20.81;ReadPosRankSum=2.335;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2717,303,0 chrX 170556 . T A 1974 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3836;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.94;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2007,222,0 chrX 170649 . C A 1853 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0613;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.53;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1886,207,0 chrX 170772 . G T 1988 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.95;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:2021,216,0 chrX 171357 . A G 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=4.461;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.235;QD=19.20;ReadPosRankSum=1.133;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1607,180,0 chrX 171764 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.06;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:903,105,0 chrX 171903 . A G 1281 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.30;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1314,147,0 chrX 172240 . A G 994 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.15;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1027,114,0 chrX 172676 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.98;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1094,120,0 chrX 173158 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3691;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.08;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1025,111,0 chrX 173226 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8223;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=13.97;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:969,111,0 chrX 173397 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=15.53;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1213,138,0 chrX 173399 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=16.82;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1345,144,0 chrX 173420 . T C 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=1.048;QD=16.55;ReadPosRankSum=-0.547;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1291,144,0 chrX 173479 . T A 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=3.025;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.747;QD=20.93;ReadPosRankSum=2.397;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2000,210,0 chrX 173883 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.010;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.4205;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.263;QD=19.17;ReadPosRankSum=2.362;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2180,240,0 chrX 174178 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2104,228,0 chrX 174303 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1823,207,0 chrX 175236 . A G 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=1.130;QD=18.31;ReadPosRankSum=2.410;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2285,249,0 chrX 175242 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=130;Dels=0.00;FS=11.490;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.861;QD=16.62;ReadPosRankSum=2.374;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2194,243,0 chrX 175309 . C T 2381 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.90;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2414,255,0 chrX 175369 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2878,318,0 chrX 175519 . T A 2021 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.62;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2054,222,0 chrX 175555 . T A 1727 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.19;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1760,192,0 chrX 175633 . C G 1598 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.19;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1631,180,0 chrX 176225 . T G 1123 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.76;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1156,129,0 chrX 176228 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=16.54;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1158,129,0 chrX 176284 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.16;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1377,156,0 chrX 176636 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=13.0256;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.79;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1527,168,0 chrX 176674 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3037;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.24;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1775,198,0 chrX 176779 . C A 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=4.216;HaplotypeScore=8.3482;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.997;QD=20.51;ReadPosRankSum=-0.157;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1428,153,0 chrX 177327 . T C 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=6.173;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.121;QD=19.33;ReadPosRankSum=2.772;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1657,183,0 chrX 177532 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.29;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2025,222,0 chrX 177584 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.14;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1302,147,0 chrX 177594 . A C 1114 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.42;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1147,129,0 chrX 177798 . C T 345 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.15;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:42:378,42,0 chrX 178010 . G T 2614 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=26.40;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2647,279,0 chrX 178358 . C T 2299 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2332,249,0 chrX 178475 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=2.663;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.463;QD=21.21;ReadPosRankSum=2.179;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2345,264,0 chrX 178571 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.16;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2205,246,0 chrX 178616 . G A 2779 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.35;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2812,294,0 chrX 179084 . T C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=4.543;HaplotypeScore=3.9802;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.498;QD=18.72;ReadPosRankSum=1.685;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1418,159,0 chrX 179498 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.29;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1352,147,0 chrX 179659 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.12;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2018,222,0 chrX 180249 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.86;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1556,168,0 chrX 180268 . T C 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.398;QD=16.99;ReadPosRankSum=1.649;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1443,168,0 chrX 181523 . G C 1668 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.5808;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.40;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1701,192,0 chrX 181907 . T G 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.893;QD=22.31;ReadPosRankSum=1.696;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2175,240,0 chrX 181967 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5409;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.42;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1646,183,0 chrX 182825 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.15;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2266,243,0 chrX 182893 . T C 1640 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=17.6610;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=15.92;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1673,186,0 chrX 183534 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.91;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1915,210,0 chrX 183608 . T C 2431 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=16.7566;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.32;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2464,273,0 chrX 183735 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=15.89;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1527,165,0 chrX 183738 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=13.94;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1329,153,0 chrX 183827 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=15.86;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1762,198,0 chrX 183834 . C T 1850 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.50;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1883,204,0 chrX 184047 . A G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.096;QD=19.48;ReadPosRankSum=1.215;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1241,138,0 chrX 184236 . C T 604 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=14.05;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:69:637,69,0 chrX 184244 . G C 615 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.18;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:72:648,72,0 chrX 184319 . C G 1093 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.53;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1126,126,0 chrX 184421 . G T 1323 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.05;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1356,144,0 chrX 184438 . A G 1035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.461;QD=19.90;ReadPosRankSum=1.664;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1068,117,0 chrX 184439 . A G 994 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.88;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1027,114,0 chrX 184560 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.31;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:908,99,0 chrX 184592 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.82;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1037,111,0 chrX 184824 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.05;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1885,207,0 chrX 184846 . G A 2304 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.27;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2337,255,0 chrX 184896 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.90;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2160,237,0 chrX 185090 . T C 1693 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1726,189,0 chrX 185495 . A T 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=3.813;HaplotypeScore=10.8227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.427;QD=22.79;ReadPosRankSum=1.687;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1811,198,0 chrX 185538 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2039,222,0 chrX 185621 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.32;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1483,159,0 chrX 185641 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5815;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.08;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1499,168,0 chrX 186025 . A C 2366 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.05;SB=-1.441e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2399,264,0 chrX 186716 . C T 585 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.45;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:75:618,75,0 chrX 187652 . G T 1369 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1402,159,0 chrX 187833 . T C 2730 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.56;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2763,309,0 chrX 188331 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1856,213,0 chrX 188547 . A G 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1901;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.070;QD=18.40;ReadPosRankSum=1.681;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1284,147,0 chrX 188919 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.0400;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.25;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1256,135,0 chrX 188961 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.70;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1461,159,0 chrX 189088 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=15.42;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1282,141,0 chrX 189098 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=15.42;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1220,132,0 chrX 189105 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=14.92;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1182,129,0 chrX 189396 . A G 723 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=12.91;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:756,84,0 chrX 189457 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=17.77;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:797,87,0 chrX 189631 . G T 742 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=14.55;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:775,84,0 chrX 189655 . A T 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.320;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.258;QD=18.74;ReadPosRankSum=1.685;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1401,156,0 chrX 189713 . A T 1752 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.9704;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.61;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1785,198,0 chrX 190302 . T A 2591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=5.983;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.009;QD=22.53;ReadPosRankSum=1.702;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2624,260,0 chrX 191257 . C A 1647 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.12;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1680,183,0 chrX 191326 . G A 815 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=20.37;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:848,93,0 chrX 191341 . T C 578 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=15.21;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,36:38:69:611,69,0 chrX 191353 . T C 606 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=16.83;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:639,69,0 chrX 191362 . A G 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=43;Dels=0.00;FS=2.638;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-1.742;QD=14.93;ReadPosRankSum=2.333;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:2,40:43:75:675,75,0 chrX 191377 . A T 580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-1.083;QD=12.08;ReadPosRankSum=1.660;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:69:613,69,0 chrX 191385 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=15.74;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:820,90,0 chrX 191389 . T C 757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=4.929;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=-1.732;QD=13.52;ReadPosRankSum=1.609;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:87:790,87,0 chrX 191400 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=14.95;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:870,99,0 chrX 191621 . A T 1061 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.80;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1094,117,0 chrX 192229 . C A 1217 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.14;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1250,138,0 chrX 192956 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.82;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2074,219,0 chrX 193406 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.48;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:809,87,0 chrX 193639 . G A 739 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.09;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:772,84,0 chrX 194415 . A T 2197 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1244;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.54;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2230,240,0 chrX 194790 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9087;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.08;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1840,195,0 chrX 194922 . A T 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.9575;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.732;QD=20.38;ReadPosRankSum=1.692;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1806,192,0 chrX 195076 . C T 1776 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.93;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1809,198,0 chrX 195349 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.46;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1514,171,0 chrX 195964 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.42;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1653,186,0 chrX 196502 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7396;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.516;QD=17.44;ReadPosRankSum=1.696;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1707,198,0 chrX 196517 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.09;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1639,180,0 chrX 196724 . A C 2575 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.51;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2608,297,0 chrX 197018 . G C 1576 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.46;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1609,180,0 chrX 197272 . A G 77.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=7.05;SB=-2.849e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:110,12,0 chrX 197407 . T A 267 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=12.14;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:33:300,33,0 chrX 197409 . A C 268 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=12.76;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:33:301,33,0 chrX 197415 . G A 307 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=13.95;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:340,36,0 chrX 197623 . A C 16.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.65;MQ0=44;MQRankSum=0.727;QD=0.34;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,33:48:21:46,0,21 chrX 197624 . C A 17.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.65;MQ0=44;MQRankSum=0.727;QD=0.36;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,34:48:18:47,0,18 chrX 198160 . T C 62.51 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.12;MQ0=23;QD=1.89;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,33:33:12:95,12,0 chrX 198353 . G T 109.13 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.08;MQ0=40;QD=1.79;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,61:61:18:142,18,0 chrX 198669 . G A 1561 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=40;QD=12.29;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:1594,192,0 chrX 198773 . T C 433 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.77;MQ0=41;MQRankSum=-1.733;QD=5.62;ReadPosRankSum=1.636;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,76:77:54:466,54,0 chrX 198840 . G A 201.01 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.65;MQ0=36;QD=3.24;SB=-4.699e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:27:234,27,0 chrX 199063 . C A 279.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;DP=147;Dels=0.00;FS=0.766;HaplotypeScore=13.0149;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=4;MQRankSum=5.094;QD=1.90;ReadPosRankSum=-1.931;SB=-1.690e+02 GT:AD:DP:GQ:PL 0/1:114,33:147:99:309,0,2092 chrX 199115 . G A 865.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;DP=134;Dels=0.00;FS=12.366;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=23.18;MQ0=20;MQRankSum=0.733;QD=6.46;ReadPosRankSum=-0.269;SB=-3.520e+02 GT:AD:DP:GQ:PL 0/1:68,66:134:99:895,0,1091 chrX 199170 . A C 577 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=4;QD=17.48;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:610,72,0 chrX 199347 . G A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.95;MQ0=9;MQRankSum=-0.311;QD=1.74;ReadPosRankSum=-0.934;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,19:23:9:72,9,0 chrX 199443 . A T 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.59;MQ0=23;MQRankSum=-1.549;QD=1.73;ReadPosRankSum=2.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,50:78:99:165,0,165 chrX 200008 . A T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=7.93;MQ0=59;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.866;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,46:70:25:124,0,25 chrX 200118 . A C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=13;Dels=0.00;FS=15.441;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=6;MQRankSum=-1.754;QD=1.75;ReadPosRankSum=1.754;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,7:13:6:54,6,0 chrX 200472 . A G 487 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=84;Dels=0.00;FS=15.051;HaplotypeScore=12.5054;MLEAC=2;MLEAF=1.00;MQ=16.97;MQ0=16;MQRankSum=-1.137;QD=5.80;ReadPosRankSum=1.678;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,79:84:63:520,63,0 chrX 200530 . G C 1474 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=16;QD=11.79;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,120:125:99:1507,177,0 chrX 200704 . G A 413 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.34;MQ0=41;QD=5.43;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:54:446,54,0 chrX 200783 . A C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=14.83;MQ0=12;MQRankSum=0.747;QD=1.04;ReadPosRankSum=0.747;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,19:21:6:53,6,0 chrX 200888 . T C 4383.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=256;Dels=0.00;FS=3.025;HaplotypeScore=15.2693;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=9;MQRankSum=2.319;QD=17.12;ReadPosRankSum=2.419;SB=-2.570e+03 GT:AD:DP:GQ:PL 1/1:2,252:256:99:4383,510,0 chrX 201045 . T C 1950 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=15;MQRankSum=-0.490;QD=15.85;ReadPosRankSum=1.699;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:1983,243,0 chrX 201150 . A T 428 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=11;MQRankSum=0.437;QD=8.92;ReadPosRankSum=2.183;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:2,46:48:54:461,54,0 chrX 201153 . A T 418 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=33.40;MQ0=12;MQRankSum=1.059;QD=8.53;ReadPosRankSum=1.636;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:1,47:49:54:451,54,0 chrX 201218 . A G 3943.01 filter AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=6;QD=18.09;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,218:218:99:3943,444,0 chrX 201370 . A G 409 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=20;MQRankSum=-0.602;QD=3.65;ReadPosRankSum=1.694;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:54:442,54,0 chrX 201443 . T A 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=13;QD=1.36;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:9:77,9,0 chrX 201444 . C T 41.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.97;MQ0=10;QD=1.40;SB=-2.321e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:9:74,9,0 chrX 201451 . A G 91.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=10;MQRankSum=-0.528;QD=2.77;ReadPosRankSum=1.432;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,31:33:15:124,15,0 chrX 201484 . T A 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=31;Dels=0.00;FS=5.746;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=18.09;MQ0=9;MQRankSum=-0.157;QD=2.84;ReadPosRankSum=-0.078;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:10,21:31:58:118,0,58 chrX 201499 . C A 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;DP=35;Dels=0.00;FS=8.860;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.30;MQ0=11;MQRankSum=-0.699;QD=2.46;ReadPosRankSum=0.508;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,21:35:78:116,0,78 chrX 201522 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;DP=48;Dels=0.00;FS=2.764;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.05;MQ0=21;MQRankSum=-0.849;QD=1.65;ReadPosRankSum=0.437;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:22,26:48:61:109,0,61 chrX 201523 . C T 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;DP=49;Dels=0.00;FS=2.755;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.03;MQ0=21;MQRankSum=-1.033;QD=1.78;ReadPosRankSum=-0.049;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:22,27:49:56:117,0,56 chrX 201552 . C T 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.37;MQ0=33;MQRankSum=-0.433;QD=1.38;ReadPosRankSum=-0.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,44:73:99:131,0,130 chrX 201612 . C T 1205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=27;MQRankSum=-0.162;QD=8.09;ReadPosRankSum=0.223;SB=-5.160e+02 GT:AD:DP:GQ:PL 0/1:39,110:149:99:1235,0,272 chrX 201706 . G A 1585 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.249;DP=94;Dels=0.00;FS=10.366;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=16;MQRankSum=-0.395;QD=16.86;ReadPosRankSum=1.723;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:7,87:94:99:1618,167,0 chrX 201718 . C A 1310 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=13;QD=16.79;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1343,162,0 chrX 201746 . C A 207.01 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.62;MQ0=55;QD=2.65;SB=-4.602e+01 GT:AD:DP:GQ:PL 1/1:20,58:78:27:240,27,0 chrX 202401 . C T 3096 filter AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=2;QD=26.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:3129,336,0 chrX 202494 . A G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.19;MQ0=105;MQRankSum=-0.700;QD=0.55;ReadPosRankSum=2.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,36:129:99:101,0,391 chrX 202629 . G A 464.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.203;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=42;MQRankSum=0.599;QD=3.74;ReadPosRankSum=-0.111;SB=-2.150e+02 GT:AD:DP:GQ:PL 0/1:80,41:124:99:494,0,1002 chrX 203046 . A C 400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.035;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1324;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=46;MQRankSum=-0.296;QD=3.85;ReadPosRankSum=0.655;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,64:104:99:430,0,272 chrX 203476 . A C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.20;MQ0=54;QD=0.25;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:27,33:60:6:46,6,0 chrX 203477 . C A 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.15;MQ0=55;QD=0.24;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:27,34:61:6:46,6,0 chrX 203773 . A C 41.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=28.7357;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=7;MQRankSum=1.621;QD=1.47;ReadPosRankSum=2.292;SB=-4.076e-02 GT:AD:DP:GQ:PL 0/1:16,3:28:18:71,0,18 chrX 203789 . T G 47.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:80,9,0 chrX 204142 . A C 161.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.282;DP=73;Dels=0.00;FS=109.300;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=1;MQRankSum=4.819;QD=2.21;ReadPosRankSum=3.729;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:10,63:73:24:194,24,0 chrX 204144 . A G 157.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.267;DP=74;Dels=0.00;FS=109.871;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=1;MQRankSum=4.824;QD=2.12;ReadPosRankSum=3.314;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:10,64:74:24:190,24,0 chrX 204181 . C T 281 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=74;Dels=0.00;FS=135.727;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=11;MQRankSum=5.662;QD=3.80;ReadPosRankSum=-2.753;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:25,49:74:36:314,36,0 chrX 204186 . G A 279 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.196;DP=70;Dels=0.00;FS=131.238;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=11;MQRankSum=5.604;QD=3.99;ReadPosRankSum=-3.555;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:25,45:70:36:312,36,0 chrX 204195 . T C 265 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.152;DP=70;Dels=0.00;FS=130.062;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=12;MQRankSum=5.588;QD=3.79;ReadPosRankSum=-3.825;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:26,44:70:36:298,36,0 chrX 204279 . T A 121.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.293;DP=38;Dels=0.00;FS=36.955;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=6;MQRankSum=2.780;QD=3.19;ReadPosRankSum=-2.327;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:9,29:38:18:154,18,0 chrX 204292 . T G 201.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.515;DP=40;Dels=0.00;FS=28.537;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=4;MQRankSum=2.805;QD=5.03;ReadPosRankSum=-1.774;SB=-5.202e+01 GT:AD:DP:GQ:PL 1/1:5,34:40:27:234,27,0 chrX 204309 . T A 263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.142;DP=34;Dels=0.00;FS=18.275;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=2;MQRankSum=1.624;QD=7.74;ReadPosRankSum=0.769;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:6,28:34:33:296,33,0 chrX 204339 . C G 890 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=18.16;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:923,102,0 chrX 204359 . T C 1125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=63;Dels=0.00;FS=9.477;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-2.593;QD=17.86;ReadPosRankSum=3.309;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:5,58:63:99:1158,129,0 chrX 204382 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=18.91;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1829,198,0 chrX 204426 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=19.76;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1890,204,0 chrX 204479 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=0.465;QD=19.26;ReadPosRankSum=1.690;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1612,180,0 chrX 204500 . C A 1669 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=19.87;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1702,186,0 chrX 204546 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7625;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=20.11;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1783,198,0 chrX 204588 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.49;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,210,0 chrX 204640 . G T 1362 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.97;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1395,153,0 chrX 204641 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=2.946;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.294;QD=20.79;ReadPosRankSum=2.372;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1343,150,0 chrX 204849 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.03;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1313,141,0 chrX 204915 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7498;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2003,216,0 chrX 205042 . A G 1894 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.28;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1927,213,0 chrX 205184 . C G 1595 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.15;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1628,180,0 chrX 205934 . T C 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.638;QD=19.86;ReadPosRankSum=1.550;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1165,132,0 chrX 206267 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=16.67;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:933,102,0 chrX 206271 . C T 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.292;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.457;QD=13.70;ReadPosRankSum=1.457;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:96:896,96,0 chrX 206485 . T A 1815 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.97;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1848,195,0 chrX 206537 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.48;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1774,198,0 chrX 206669 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=101;Dels=0.00;FS=2.845;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.529;QD=22.48;ReadPosRankSum=2.401;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2303,249,0 chrX 206790 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.17;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2738,297,0 chrX 206922 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=19.6932;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2731,291,0 chrX 207161 . G A 3501.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.6006;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.44;SB=-2.029e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3501,393,0 chrX 207649 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.04;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1106,117,0 chrX 207695 . T A 1136 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=17.75;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1169,126,0 chrX 208377 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.16;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1850,198,0 chrX 208641 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1590,177,0 chrX 209220 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2589;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.760;QD=21.22;ReadPosRankSum=1.519;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2452,279,0 chrX 209321 . T A 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=2.877;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.369;QD=23.17;ReadPosRankSum=2.405;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2582,276,0 chrX 209759 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.31;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1385,150,0 chrX 209763 . T C 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.118;QD=15.96;ReadPosRankSum=2.349;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1214,141,0 chrX 209814 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.24;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2400,261,0 chrX 209866 . A G 2948 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.52;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2981,336,0 chrX 209880 . A T 2771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=135;Dels=0.00;FS=2.590;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.082;QD=20.53;ReadPosRankSum=2.933;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2804,297,0 chrX 209951 . C T 1824 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.21;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1857,198,0 chrX 210582 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.57;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2107,225,0 chrX 210603 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1659,183,0 chrX 210645 . A G 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.664;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.269;QD=17.90;ReadPosRankSum=2.355;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1429,159,0 chrX 210759 . G C 1817 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.71;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1850,204,0 chrX 210834 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.507;QD=19.95;ReadPosRankSum=1.648;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1669,186,0 chrX 210923 . T C 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.562;QD=21.59;ReadPosRankSum=1.687;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1717,192,0 chrX 210936 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.76;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1735,189,0 chrX 211104 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=18.38;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2147,237,0 chrX 211107 . G T 2155 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2345;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.96;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2188,240,0 chrX 211226 . A T 3608.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.984;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=12.4430;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.582;QD=22.14;ReadPosRankSum=-0.813;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,162:163:99:3608,399,0 chrX 211287 . T C 3115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.409;QD=21.63;ReadPosRankSum=1.708;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:99:3148,357,0 chrX 211319 . T C 2487 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.82;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2520,273,0 chrX 211322 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.90;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2374,258,0 chrX 211343 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.15;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1927,216,0 chrX 211421 . C A 1683 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.70;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1716,183,0 chrX 211498 . T C 2569 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.76;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2602,288,0 chrX 211638 . A T 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.953;QD=20.22;ReadPosRankSum=2.897;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:3,104:107:99:2197,240,0 chrX 211764 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.08;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1254,135,0 chrX 211845 . C A 1204 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.81;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1237,138,0 chrX 211863 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.68;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1182,129,0 chrX 211865 . T C 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.052;QD=17.00;ReadPosRankSum=1.627;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1155,129,0 chrX 211924 . T A 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.01;FS=3.731;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.509;QD=14.97;ReadPosRankSum=1.610;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1320,141,0 chrX 211937 . A G 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=89;Dels=0.00;FS=6.145;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.311;QD=16.37;ReadPosRankSum=2.920;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:3,85:89:99:1490,165,0 chrX 212108 . A G 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.480;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.178;QD=21.29;ReadPosRankSum=1.688;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1694,192,0 chrX 212471 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.95;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1835,201,0 chrX 212605 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1321,147,0 chrX 213175 . T C 1168 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.86;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1201,135,0 chrX 213602 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.88;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1485,168,0 chrX 213608 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.967;QD=17.51;ReadPosRankSum=1.692;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1556,177,0 chrX 214163 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.17;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1718,198,0 chrX 214698 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.563;QD=19.53;ReadPosRankSum=1.690;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1654,186,0 chrX 215069 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.95;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1731,183,0 chrX 215224 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.25;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1724,189,0 chrX 215249 . T C 1890 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.24;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1923,213,0 chrX 215426 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.68;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1746,198,0 chrX 215480 . G A 937 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.35;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:970,108,0 chrX 215481 . G A 979 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.20;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1012,108,0 chrX 215482 . T C 950 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.510;QD=18.63;ReadPosRankSum=1.664;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:983,108,0 chrX 215637 . A G 2341 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.7346;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.48;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2374,264,0 chrX 215951 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.03;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2037,216,0 chrX 215960 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.72;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2001,213,0 chrX 216038 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.76;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1933,213,0 chrX 216132 . A C 2524 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.34;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2557,288,0 chrX 216283 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.49;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2996,321,0 chrX 216313 . G A 2326 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.15;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2359,255,0 chrX 216509 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=4.929;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.082;QD=22.19;ReadPosRankSum=-0.124;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1897,207,0 chrX 217028 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.36;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1098,123,0 chrX 217367 . T C 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=3.823;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.972;QD=19.66;ReadPosRankSum=1.648;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:93:839,93,0 chrX 218068 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.075;QD=22.24;ReadPosRankSum=1.694;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2079,231,0 chrX 218107 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6573;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=17.11;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1710,186,0 chrX 218143 . A G 1585 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=16.01;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1618,177,0 chrX 218146 . T C 1571 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.53;MQ0=0;QD=16.20;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1604,180,0 chrX 218152 . C T 1534 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=16.86;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1567,168,0 chrX 218206 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.11;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1419,162,0 chrX 218293 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.73;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,159,0 chrX 218308 . G T 1291 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.27;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1324,144,0 chrX 218340 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.42;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1605,171,0 chrX 218503 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.9687;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.30;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1698,183,0 chrX 218662 . A C 1492 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.01;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1525,171,0 chrX 218719 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=18.73;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1700,186,0 chrX 218728 . G A 1538 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=16.54;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1571,168,0 chrX 218964 . A G 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=88;Dels=0.00;FS=2.988;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.478;QD=18.43;ReadPosRankSum=2.392;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:2,83:88:99:1655,183,0 chrX 219051 . T C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=74;Dels=0.00;FS=12.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.514;QD=18.51;ReadPosRankSum=3.335;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:99:1403,153,0 chrX 219066 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.95;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1559,171,0 chrX 219267 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.73;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1588,171,0 chrX 219324 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.86;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1334,150,0 chrX 219354 . A C 1136 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.29;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1169,132,0 chrX 219419 . C T 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.993;QD=19.49;ReadPosRankSum=0.162;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1514,162,0 chrX 219452 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1064;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.94;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1586,171,0 chrX 219542 . T C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.407;QD=19.42;ReadPosRankSum=1.678;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1295,144,0 chrX 219914 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.10;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1801,207,0 chrX 220326 . C A 891 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=18.96;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:924,99,0 chrX 220333 . G C 820 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.64;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:853,93,0 chrX 220447 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=16.75;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1021,111,0 chrX 220448 . A G 916 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=15.79;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:949,108,0 chrX 220459 . C A 815 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=0;QD=14.30;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:90:848,90,0 chrX 220469 . A T 649 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=12.48;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:75:682,75,0 chrX 220502 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=12.86;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:599,66,0 chrX 220527 . T A 395 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.17;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:45:428,45,0 chrX 220622 . G C 1148 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.66;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1181,132,0 chrX 220726 . T C 1001 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.63;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1034,114,0 chrX 220733 . G T 959 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.57;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:992,108,0 chrX 220756 . T A 853 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=17.06;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:886,99,0 chrX 220988 . T A 1261 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.34;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1294,141,0 chrX 221208 . T A 1734 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1781;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.15;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1767,192,0 chrX 221323 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.59;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1911,207,0 chrX 221351 . A G 1981 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.85;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2014,225,0 chrX 221620 . T C 1683 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.70;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1716,189,0 chrX 222067 . T G 1188 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1221,135,0 chrX 222287 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.31;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1104,117,0 chrX 222376 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.26;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1636,183,0 chrX 223295 . T C 942 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=15.44;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:975,108,0 chrX 223465 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.05;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2622,282,0 chrX 223487 . T A 1988 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.59;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2021,225,0 chrX 223501 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.00;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1873,201,0 chrX 223534 . T C 1045 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=60.4619;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=14.72;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1078,120,0 chrX 223663 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=15.21;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1463,165,0 chrX 223746 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.60;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2722,288,0 chrX 225521 . A G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.110;HaplotypeScore=10.1785;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.693;QD=20.88;ReadPosRankSum=1.693;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1912,210,0 chrX 225601 . A G 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=109;Dels=0.00;FS=5.816;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.217;QD=20.94;ReadPosRankSum=2.897;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:3,104:109:99:2316,255,0 chrX 225914 . T C 1003 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=11.9288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1036,117,0 chrX 226023 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.4106;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.45;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2484,261,0 chrX 226353 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.52;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1613,183,0 chrX 226665 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1215,135,0 chrX 226843 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.92;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1058,117,0 chrX 226899 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.67;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1036,117,0 chrX 227113 . A T 1195 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.73;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1228,132,0 chrX 227303 . A T 1019 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.26;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1052,111,0 chrX 227773 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.65;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1198,129,0 chrX 227829 . T C 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.831;QD=19.67;ReadPosRankSum=1.637;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1469,165,0 chrX 227961 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.08;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1755,186,0 chrX 228032 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=10.8438;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.34;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1477,165,0 chrX 228198 . T C 1235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=3.174;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=22.45;ReadPosRankSum=1.668;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1268,141,0 chrX 228732 . A G 432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.558;DP=30;Dels=0.00;FS=2.741;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-2.765;QD=14.40;ReadPosRankSum=2.765;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:3,27:30:51:465,51,0 chrX 228740 . T C 402 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=14.89;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:435,48,0 chrX 228745 . C T 383 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=14.73;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:45:416,45,0 chrX 228756 . A G 341 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=13.12;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:42:374,42,0 chrX 228789 . G A 696 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.57;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:729,81,0 chrX 228793 . A T 669 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=15.56;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:702,78,0 chrX 228855 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.67;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1273,141,0 chrX 229028 . G A 496 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.55;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:529,57,0 chrX 229061 . T G 500 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.73;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:533,60,0 chrX 229175 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.79;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1722,189,0 chrX 229547 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2153,234,0 chrX 229891 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.90;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2123,231,0 chrX 230069 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.19;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1549,174,0 chrX 230256 . T G 2073 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.53;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2106,234,0 chrX 230282 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.17;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2028,216,0 chrX 230372 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3495;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.26;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2095,222,0 chrX 230438 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.20;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2075,228,0 chrX 230464 . G C 2215 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.93;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2248,249,0 chrX 230606 . C T 2830 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2863,306,0 chrX 230900 . A T 3353.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=143;Dels=0.00;FS=3.231;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.700;QD=23.45;ReadPosRankSum=1.708;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3353,357,0 chrX 231314 . A G 3070 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.93;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3103,348,0 chrX 231395 . C T 2338 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.71;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,124:132:99:2371,258,0 chrX 231417 . T G 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DP=133;Dels=0.00;FS=8.553;HaplotypeScore=3.5441;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.451;QD=15.56;ReadPosRankSum=0.656;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2102,218,0 chrX 231423 . T A 2183 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=15.93;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2216,246,0 chrX 231610 . C A 2006 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.86;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2039,219,0 chrX 231747 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.50;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1593,168,0 chrX 231987 . A T 2734 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.78;SB=-1.520e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2767,306,0 chrX 232348 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.55;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1156,129,0 chrX 232513 . C T 584 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.22;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:617,66,0 chrX 232656 . A G 909 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.20;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:942,105,0 chrX 232663 . G A 876 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.88;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:909,102,0 chrX 233083 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.95;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1422,150,0 chrX 233256 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.02;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1330,141,0 chrX 233289 . A G 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.340;QD=19.42;ReadPosRankSum=1.667;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1062,117,0 chrX 233469 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.90;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1768,195,0 chrX 233472 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.56;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1536,174,0 chrX 233503 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.91;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1526,162,0 chrX 233724 . C G 1929 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.17;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1962,228,0 chrX 233792 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.11;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1957,213,0 chrX 233808 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.86;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,159,0 chrX 233923 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.23;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:96:903,96,0 chrX 233924 . A C 849 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.74;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:882,99,0 chrX 234306 . G A 1040 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=22.13;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1073,114,0 chrX 234309 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4707;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.89;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1087,117,0 chrX 234318 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7040;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.51;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:1106,117,0 chrX 234627 . G T 1925 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.65;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1958,207,0 chrX 234644 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.18;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1874,198,0 chrX 234824 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1950,219,0 chrX 235091 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.73;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2010,216,0 chrX 235235 . A G 2630 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6430;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.87;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2663,297,0 chrX 235355 . T C 2439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.388;QD=20.85;ReadPosRankSum=1.702;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2472,273,0 chrX 235362 . G T 2437 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.14;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2470,270,0 chrX 235475 . T C 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=5.8135;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.047;QD=18.70;ReadPosRankSum=1.588;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1828,201,0 chrX 235604 . A C 1845 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.33;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1878,207,0 chrX 236023 . T C 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.90;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1998,228,0 chrX 236901 . T A 786 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=13.55;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:87:819,87,0 chrX 236905 . A G 827 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.04;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:860,96,0 chrX 236912 . A G 1231 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1135;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.84;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1264,141,0 chrX 236974 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.38;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1945,225,0 chrX 237017 . A C 1126 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.44;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1159,129,0 chrX 237020 . G A 961 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=12.48;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:994,108,0 chrX 237032 . G C 849 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;QD=12.67;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:882,99,0 chrX 237035 . T G 878 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.91;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:911,102,0 chrX 237073 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=13.80;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1054,111,0 chrX 237161 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.92;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1538,168,0 chrX 237319 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.28;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1331,153,0 chrX 237366 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=18.37;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1374,153,0 chrX 237403 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.78;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1491,162,0 chrX 237740 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.92;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1168,129,0 chrX 237784 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.09;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1007,108,0 chrX 237787 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.93;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1019,108,0 chrX 238262 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.11;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1512,165,0 chrX 238334 . A G 738 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=15.70;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:771,84,0 chrX 238356 . G C 1127 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1160,129,0 chrX 238393 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.520;DP=98;Dels=0.00;FS=8.143;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.534;QD=18.96;ReadPosRankSum=3.600;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:5,93:98:99:1891,213,0 chrX 238463 . T C 2675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0024;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.396;QD=23.26;ReadPosRankSum=2.364;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2708,303,0 chrX 238732 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.32;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1938,216,0 chrX 238738 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.07;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2238,252,0 chrX 238867 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1313;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.68;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1686,189,0 chrX 238933 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.01;FS=3.045;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.692;QD=20.42;ReadPosRankSum=2.396;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1912,207,0 chrX 238948 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=3.038;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.086;QD=19.72;ReadPosRankSum=2.351;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:2,98:101:99:2025,228,0 chrX 238968 . A G 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.191;QD=20.05;ReadPosRankSum=1.696;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1958,216,0 chrX 239145 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=16.42;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1445,156,0 chrX 239361 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.04;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1800,195,0 chrX 239372 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.64;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1515,162,0 chrX 239387 . C G 1388 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.03;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1421,156,0 chrX 239807 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.43;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1586,180,0 chrX 239917 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.80;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1320,141,0 chrX 239955 . C T 1013 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.76;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1046,117,0 chrX 239959 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.31;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1076,120,0 chrX 240040 . A G 999 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.98;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1032,114,0 chrX 240067 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.92;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1142,123,0 chrX 240082 . C A 1133 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.23;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1166,129,0 chrX 240199 . A G 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=4.567;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.063;QD=20.65;ReadPosRankSum=1.690;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1747,201,0 chrX 240214 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.99;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1901,216,0 chrX 241027 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.55;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1759,198,0 chrX 241420 . A G 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.941;QD=19.89;ReadPosRankSum=1.634;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:81:729,81,0 chrX 241432 . C T 622 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=14.81;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:655,72,0 chrX 241555 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.53;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1282,141,0 chrX 241666 . C G 890 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.9133;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.25;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:923,102,0 chrX 242423 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3281;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.10;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1974,219,0 chrX 242549 . A G 2345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-1.058;QD=20.57;ReadPosRankSum=1.701;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2378,267,0 chrX 242557 . A C 2340 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.08;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2373,270,0 chrX 242936 . A G 1693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.687;QD=21.99;ReadPosRankSum=-1.372;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1726,189,0 chrX 243323 . A G 1893 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1926,216,0 chrX 243812 . C A 2296 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.87;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2329,249,0 chrX 243941 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1698,192,0 chrX 244181 . C T 3520.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.7599;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.00;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3520,387,0 chrX 244253 . G T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.88;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3272,357,0 chrX 244325 . T C 2379 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.05;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2412,270,0 chrX 244406 . C T 3421.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.5811;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.27;SB=-1.583e+03 GT:AD:DP:GQ:PL 1/1:0,145:147:99:3421,372,0 chrX 244609 . G A 2785 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.78;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2818,297,0 chrX 244637 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.69;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2691,297,0 chrX 244650 . A G 2432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=134;Dels=0.00;FS=3.008;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.119;QD=18.15;ReadPosRankSum=2.413;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2465,282,0 chrX 244689 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.6614;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.37;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2788,300,0 chrX 244726 . A G 2844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=3.443;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.075;QD=20.61;ReadPosRankSum=1.707;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2877,318,0 chrX 244790 . T C 3355.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=171;Dels=0.00;FS=4.285;HaplotypeScore=8.4049;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.240;QD=19.62;ReadPosRankSum=1.712;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,168:171:99:3355,378,0 chrX 245030 . A G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.540;QD=16.60;ReadPosRankSum=1.658;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1577,177,0 chrX 245322 . T C 392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;MQRankSum=-1.650;QD=9.33;ReadPosRankSum=1.403;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:48:425,48,0 chrX 245341 . G A 469 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.61;MQ0=0;QD=7.82;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:57:502,57,0 chrX 245368 . C A 590 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=8.68;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:69:623,69,0 chrX 245384 . G T 409 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.66;MQ0=0;QD=6.70;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:48:442,48,0 chrX 245399 . T A 387 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=7.90;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:48:420,48,0 chrX 245416 . T G 323 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=7.18;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:42:356,42,0 chrX 245436 . T C 315 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=10.16;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:39:348,39,0 chrX 245568 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=24.08;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1767,189,0 chrX 245734 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=19.77;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1496,171,0 chrX 245918 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.03;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1310,135,0 chrX 246253 . G A 261 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.08;SB=-7.798e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:33:294,33,0 chrX 246266 . G A 321 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=13.96;SB=-8.600e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:354,39,0 chrX 246303 . G T 958 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:991,105,0 chrX 246321 . C T 1037 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1070,117,0 chrX 246407 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.60;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1013,114,0 chrX 246420 . C T 920 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.44;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:953,102,0 chrX 246591 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.89;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1431,156,0 chrX 246614 . C G 1760 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.71;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1793,198,0 chrX 246652 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.75;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1791,192,0 chrX 247029 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.357;DP=89;Dels=0.00;FS=12.549;HaplotypeScore=9.9331;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.030;QD=20.66;ReadPosRankSum=3.317;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:4,85:89:99:1872,213,0 chrX 247088 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.33;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2187,231,0 chrX 247233 . A G 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.913;DP=79;Dels=0.00;FS=8.690;HaplotypeScore=10.0209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.142;QD=18.87;ReadPosRankSum=2.323;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1524,171,0 chrX 247320 . T A 1976 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.25;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2009,219,0 chrX 247356 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.02;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1925,216,0 chrX 247484 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3779;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.73;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1292,141,0 chrX 247487 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3779;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.78;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1331,144,0 chrX 247585 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.97;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1531,171,0 chrX 247668 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.53;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1453,156,0 chrX 247893 . A G 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=54;Dels=0.00;FS=3.087;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.252;QD=20.13;ReadPosRankSum=2.359;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1120,129,0 chrX 247938 . T G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.840;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.281;QD=19.63;ReadPosRankSum=1.657;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:936,108,0 chrX 247987 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.04;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1042,117,0 chrX 248356 . T C 1090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.46;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1123,126,0 chrX 248378 . G C 1242 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.82;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1275,141,0 chrX 248379 . T C 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.543;QD=18.13;ReadPosRankSum=1.681;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1248,141,0 chrX 248611 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.124;QD=22.40;ReadPosRankSum=1.311;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1713,189,0 chrX 248872 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.67;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1940,207,0 chrX 248893 . C A 1842 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.67;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1875,204,0 chrX 248957 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=12.8374;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.59;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1782,189,0 chrX 249084 . T G 1020 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.88;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1053,114,0 chrX 249201 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.79;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1241,135,0 chrX 249343 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.00;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1025,114,0 chrX 249495 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.34;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1418,156,0 chrX 249801 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.43;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1490,162,0 chrX 249923 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.90;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1830,201,0 chrX 249990 . A G 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=3.070;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.850;QD=18.07;ReadPosRankSum=2.183;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1370,153,0 chrX 250151 . T C 1813 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.95;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1846,210,0 chrX 250158 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.80;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1813,201,0 chrX 250174 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.84;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1599,171,0 chrX 250241 . A G 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=89;Dels=0.00;FS=2.761;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.685;QD=18.72;ReadPosRankSum=2.393;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,85:89:99:1699,189,0 chrX 250254 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.73;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1940,204,0 chrX 250329 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.98;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2331,246,0 chrX 250353 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.37;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2020,219,0 chrX 250812 . C T 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.886;QD=20.99;ReadPosRankSum=-1.531;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1859,201,0 chrX 251256 . T C 2495 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.10;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2528,285,0 chrX 251498 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1373,153,0 chrX 251581 . A G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4184;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.711;QD=18.65;ReadPosRankSum=1.688;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1506,168,0 chrX 251673 . G A 2707 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.76;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2740,297,0 chrX 251780 . A G 2121 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.39;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2154,237,0 chrX 251884 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.22;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1688,195,0 chrX 252393 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.00;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1023,114,0 chrX 252496 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.00;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1667,177,0 chrX 252499 . C G 1470 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=17.09;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1503,171,0 chrX 252564 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1367;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=16.80;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1545,177,0 chrX 252640 . G C 1448 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.84;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1481,165,0 chrX 252649 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.37;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1505,162,0 chrX 252688 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.22;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1529,174,0 chrX 252733 . A G 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.847;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.195;QD=20.14;ReadPosRankSum=1.673;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1201,138,0 chrX 252960 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.52;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1681,180,0 chrX 252967 . A G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.212;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.157;QD=19.50;ReadPosRankSum=1.693;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1749,192,0 chrX 252997 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.55;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1440,165,0 chrX 253125 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.44;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2036,225,0 chrX 253186 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.23;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2117,234,0 chrX 253312 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.49;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2268,246,0 chrX 253339 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.05;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2150,228,0 chrX 253378 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.11;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1912,210,0 chrX 253393 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.80;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1617,177,0 chrX 253405 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.21;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1963,210,0 chrX 253440 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=16.34;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2043,216,0 chrX 254068 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3325;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.62;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1838,204,0 chrX 254075 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.42;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1742,192,0 chrX 254119 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=16.94;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1439,159,0 chrX 254247 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.85;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1641,183,0 chrX 254489 . G A 1104 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.40;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1137,123,0 chrX 254492 . T C 1162 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.44;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1195,132,0 chrX 254503 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.78;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1291,141,0 chrX 255251 . C G 1177 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.80;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1210,135,0 chrX 255496 . C A 1187 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.20;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1220,135,0 chrX 255796 . A T 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=85;Dels=0.00;FS=4.087;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.718;QD=20.54;ReadPosRankSum=1.648;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1779,198,0 chrX 256639 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.05;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2282,255,0 chrX 256715 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.47;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1875,213,0 chrX 256755 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=5.013;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.172;QD=15.32;ReadPosRankSum=1.701;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1734,189,0 chrX 256964 . A T 1649 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.87;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1682,186,0 chrX 257014 . T C 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-1.275;QD=20.39;ReadPosRankSum=1.667;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2215,252,0 chrX 257035 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.31;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2611,282,0 chrX 257445 . G T 1955 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.55;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1988,213,0 chrX 257783 . A C 2865 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.38;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2898,324,0 chrX 258025 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.61;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2237,249,0 chrX 258097 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.13;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1946,219,0 chrX 258142 . G A 2595 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=17.4219;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.60;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2628,282,0 chrX 258292 . G T 2121 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.21;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2154,231,0 chrX 258301 . T C 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.762;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.858;QD=19.93;ReadPosRankSum=1.700;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2165,240,0 chrX 258370 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=16.80;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1192,135,0 chrX 259162 . A C 1081 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.02;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1114,123,0 chrX 259182 . C T 824 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.48;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:93:857,93,0 chrX 259194 . C A 652 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=16.30;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:685,72,0 chrX 259357 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1036,111,0 chrX 259504 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.5896;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.32;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1618,171,0 chrX 260155 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.20;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1912,210,0 chrX 260294 . T C 1211 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=15.93;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1244,138,0 chrX 260320 . T C 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.826;QD=16.29;ReadPosRankSum=1.519;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1092,120,0 chrX 260335 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.81;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1045,114,0 chrX 260357 . G C 1222 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.21;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1255,138,0 chrX 260440 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.59;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1244,135,0 chrX 260448 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.39;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1262,135,0 chrX 260627 . A T 1919 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.29;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1952,207,0 chrX 260920 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.50;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1180,132,0 chrX 261296 . C A 756 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.00;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:789,87,0 chrX 261413 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1340,147,0 chrX 261474 . C G 1249 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.30;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1282,141,0 chrX 261829 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.10;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1141,123,0 chrX 261902 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.72;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1336,150,0 chrX 262115 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.75;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1198,135,0 chrX 262236 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.41;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1652,189,0 chrX 262403 . A T 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.42;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1626,180,0 chrX 262565 . T C 1615 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.71;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1648,186,0 chrX 262898 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.23;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1368,150,0 chrX 263201 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.10;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1867,204,0 chrX 263481 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=25.62;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2646,282,0 chrX 263508 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.68;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2117,231,0 chrX 263540 . C A 1593 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.53;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1626,183,0 chrX 263633 . G T 1282 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1315,141,0 chrX 263687 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.80;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2141,231,0 chrX 263723 . G T 1982 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.54;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2015,222,0 chrX 263882 . A C 1591 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.21;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1624,180,0 chrX 264194 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2847;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.14;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1682,192,0 chrX 264272 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.53;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1475,156,0 chrX 264413 . T C 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.091;QD=19.33;ReadPosRankSum=1.689;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1618,183,0 chrX 264710 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1581,177,0 chrX 264790 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.84;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1514,171,0 chrX 264838 . G T 1887 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.45;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1920,210,0 chrX 265353 . A G 2228 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.22;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2261,252,0 chrX 265449 . A T 2747 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.62;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2780,306,0 chrX 265530 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.552;QD=17.92;ReadPosRankSum=1.687;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1413,150,0 chrX 265751 . A C 714 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.60;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:747,84,0 chrX 265950 . T G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039;DP=43;Dels=0.00;FS=48.451;HaplotypeScore=8.1961;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=0.835;QD=0.93;ReadPosRankSum=-1.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,11:43:70:70,0,448 chrX 266229 . A T 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.328;QD=22.38;ReadPosRankSum=1.675;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1376,147,0 chrX 266273 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.07;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1406,153,0 chrX 266444 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.98;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:952,105,0 chrX 266570 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1250,138,0 chrX 266638 . C A 1023 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1056,111,0 chrX 266741 . T A 696 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:729,81,0 chrX 267355 . A C 892 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:925,105,0 chrX 267522 . A G 1058 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.00;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1091,120,0 chrX 267824 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.65;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1245,138,0 chrX 267941 . C G 880 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:913,102,0 chrX 267977 . A G 963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.540;QD=17.83;ReadPosRankSum=1.604;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:996,114,0 chrX 268403 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.18;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1266,132,0 chrX 269458 . G T 1935 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=18.43;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1968,213,0 chrX 269482 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.85;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1693,186,0 chrX 269821 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.89;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2412,255,0 chrX 269832 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=4.582;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-1.501;QD=18.36;ReadPosRankSum=1.681;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2511,273,0 chrX 269989 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.87;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1131,120,0 chrX 270011 . T C 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=2.879;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.339;QD=22.14;ReadPosRankSum=2.249;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1118,129,0 chrX 270368 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.94;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1321,147,0 chrX 271477 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1476,168,0 chrX 272191 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.89;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2143,237,0 chrX 272580 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.79;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2406,258,0 chrX 273117 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.215;QD=20.52;ReadPosRankSum=1.629;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1408,156,0 chrX 273348 . C T 2571 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.40;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2604,276,0 chrX 273366 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.36;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2218,240,0 chrX 273435 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.79;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2426,264,0 chrX 273516 . C A 2300 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.23;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2333,252,0 chrX 273525 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.96;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2273,240,0 chrX 273531 . C A 2202 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.94;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2235,234,0 chrX 273972 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.52;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2150,240,0 chrX 274173 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2225,252,0 chrX 274203 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1555,171,0 chrX 275054 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1779,195,0 chrX 275124 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.02;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1799,204,0 chrX 275210 . T A 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.104;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.848;QD=20.59;ReadPosRankSum=1.658;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1968,213,0 chrX 275495 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6173;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.82;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1990,216,0 chrX 275537 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.23;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1473,162,0 chrX 275542 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.67;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1528,165,0 chrX 275588 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.90;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1429,153,0 chrX 275597 . T C 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=4.075;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.130;QD=16.09;ReadPosRankSum=1.682;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1159,129,0 chrX 275984 . G T 960 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.14;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:993,111,0 chrX 276470 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2490;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.87;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1452,156,0 chrX 276524 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=17.07;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1296,150,0 chrX 276539 . A G 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.421;QD=17.51;ReadPosRankSum=1.685;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1329,150,0 chrX 276704 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.23;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1067,120,0 chrX 277037 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.32;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1173,126,0 chrX 277465 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.59;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1267,144,0 chrX 277623 . T C 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=82;Dels=0.00;FS=2.846;HaplotypeScore=14.1435;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.940;QD=21.16;ReadPosRankSum=2.327;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,78:82:99:1768,195,0 chrX 277760 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.20;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1630,174,0 chrX 278224 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.45;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1086,120,0 chrX 278226 . A T 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.560;QD=16.08;ReadPosRankSum=1.679;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1078,114,0 chrX 278411 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.07;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1348,147,0 chrX 279101 . A G 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=9.395;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.746;QD=20.45;ReadPosRankSum=2.365;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1219,141,0 chrX 279200 . T C 1148 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=2.611;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.861;QD=14.35;ReadPosRankSum=2.811;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1181,129,0 chrX 279201 . G A 1150 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=14.56;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1183,129,0 chrX 279207 . A G 1158 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.567;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.856;QD=13.79;ReadPosRankSum=1.690;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1191,132,0 chrX 279703 . G A 2439 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.23;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2472,270,0 chrX 280163 . A G 2005 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2038,225,0 chrX 280289 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.02;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2556,279,0 chrX 281003 . T C 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=2.800;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.389;QD=16.72;ReadPosRankSum=2.359;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:936,105,0 chrX 281006 . C A 917 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=15.81;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:950,102,0 chrX 281056 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=2.635;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.043;QD=16.13;ReadPosRankSum=2.334;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1404,159,0 chrX 281119 . A G 2141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=8.377;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.041;QD=23.27;ReadPosRankSum=2.342;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,89:92:99:2174,237,0 chrX 281289 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.38;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1987,213,0 chrX 281490 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.51;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1754,186,0 chrX 281529 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.9112;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.61;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1522,168,0 chrX 281676 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.243;QD=22.55;ReadPosRankSum=1.691;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1950,219,0 chrX 282456 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.00;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1838,207,0 chrX 282525 . T C 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=3.547;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.765;QD=19.34;ReadPosRankSum=1.692;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,85:90:99:1774,198,0 chrX 282729 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.92;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1372,153,0 chrX 282930 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.03;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1365,153,0 chrX 283056 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.02;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1156,123,0 chrX 283089 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.84;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1242,132,0 chrX 283478 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=5.6016;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.32;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:898,102,0 chrX 283605 . C G 1002 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.65;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1035,120,0 chrX 283650 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1186,129,0 chrX 284198 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.52;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1776,201,0 chrX 284309 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:81:758,81,0 chrX 284561 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.66;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1926,204,0 chrX 284933 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.99;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1803,198,0 chrX 285086 . A G 2240 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.82;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2273,261,0 chrX 285278 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=15.93;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1244,141,0 chrX 285553 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.09;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1912,204,0 chrX 285967 . G T 1411 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.16;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1444,156,0 chrX 286028 . A G 1115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.127;QD=17.70;ReadPosRankSum=1.677;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1148,129,0 chrX 286125 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.85;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1264,138,0 chrX 286349 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.91;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1339,147,0 chrX 286446 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.07;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1578,171,0 chrX 286569 . T A 1982 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.86;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2015,222,0 chrX 286734 . A T 1163 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.40;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1196,129,0 chrX 287043 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.68;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1501,171,0 chrX 287508 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.36;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1175,132,0 chrX 287517 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=16.22;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1087,123,0 chrX 287913 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.25;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1329,144,0 chrX 287994 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.28;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1672,186,0 chrX 287997 . T C 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.521;QD=18.33;ReadPosRankSum=1.648;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1536,174,0 chrX 288054 . A T 1610 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.88;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1643,183,0 chrX 288142 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1218,135,0 chrX 288231 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.12;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1601,177,0 chrX 288305 . T G 1346 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.03;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1379,153,0 chrX 288319 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.32;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1480,171,0 chrX 288609 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.66;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2429,261,0 chrX 289229 . C T 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=83;Dels=0.00;FS=8.617;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.736;QD=15.07;ReadPosRankSum=-1.429;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1284,128,0 chrX 289332 . T A 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=73;Dels=0.00;FS=7.494;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.024;QD=20.34;ReadPosRankSum=1.637;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1518,165,0 chrX 289744 . C T 1116 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1149,123,0 chrX 289772 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.45;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1487,171,0 chrX 289825 . A T 1970 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.64;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2003,222,0 chrX 289974 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=20.00;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1553,183,0 chrX 290043 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.84;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1465,165,0 chrX 290358 . A G 543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=82;Dels=0.00;FS=2.783;HaplotypeScore=9.6360;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;MQRankSum=-1.818;QD=6.62;ReadPosRankSum=2.387;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,77:82:66:576,66,0 chrX 290364 . G T 560 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6136;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=7.00;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:66:593,66,0 chrX 290391 . G T 87.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=73;Dels=0.00;FS=1.115;HaplotypeScore=6.3550;MLEAC=1;MLEAF=0.500;MQ=41.63;MQ0=0;MQRankSum=-2.578;QD=1.19;ReadPosRankSum=-3.530;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:56,17:73:99:117,0,396 chrX 290397 . A G 85.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;DP=77;Dels=0.00;FS=2.502;HaplotypeScore=4.9837;MLEAC=1;MLEAF=0.500;MQ=43.61;MQ0=0;MQRankSum=-2.878;QD=1.10;ReadPosRankSum=-4.106;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:61,16:77:99:115,0,419 chrX 290403 . C G 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;DP=75;Dels=0.00;FS=4.395;HaplotypeScore=4.1950;MLEAC=1;MLEAF=0.500;MQ=44.76;MQ0=0;MQRankSum=-3.622;QD=0.21;ReadPosRankSum=-5.584;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:59,14:75:46:46,0,547 chrX 290406 . A G 817 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=10.61;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:96:850,96,0 chrX 290408 . T A 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DP=77;Dels=0.00;FS=2.811;HaplotypeScore=4.9381;MLEAC=1;MLEAF=0.500;MQ=46.39;MQ0=0;MQRankSum=-3.711;QD=0.21;ReadPosRankSum=-5.656;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:63,13:77:46:46,0,637 chrX 290444 . A G 1624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=9.001;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.806;QD=20.82;ReadPosRankSum=2.229;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1657,180,0 chrX 290515 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;DP=92;Dels=0.00;FS=10.348;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-0.122;QD=17.01;ReadPosRankSum=1.150;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1598,183,0 chrX 290520 . G A 1631 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.54;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1664,180,0 chrX 290542 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3468;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=15.83;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1584,168,0 chrX 290682 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.71;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1669,189,0 chrX 290709 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=19.47;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1318,144,0 chrX 290730 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=18.71;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1343,147,0 chrX 290883 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.34;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2044,222,0 chrX 291165 . T C 873 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=9.9880;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=16.79;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:906,102,0 chrX 291251 . T A 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.245;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.410;QD=22.31;ReadPosRankSum=1.687;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1751,186,0 chrX 291405 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.08;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2120,234,0 chrX 291438 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.836;QD=20.79;ReadPosRankSum=1.691;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1821,204,0 chrX 291762 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2350,249,0 chrX 291807 . A G 2493 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.26;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2526,288,0 chrX 291846 . T C 2366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7168;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-0.577;QD=20.57;ReadPosRankSum=0.669;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2399,276,0 chrX 291927 . G A 2443 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.81;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2476,276,0 chrX 291961 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.26;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2079,225,0 chrX 291966 . G T 1937 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.99;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1970,219,0 chrX 292117 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0526;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.446;QD=20.39;ReadPosRankSum=1.700;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2296,249,0 chrX 292170 . A T 2483 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.9133;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.40;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2516,273,0 chrX 292319 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.35;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1831,195,0 chrX 292331 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=104;Dels=0.00;FS=6.866;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.872;QD=17.37;ReadPosRankSum=2.354;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1840,210,0 chrX 292376 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=6.434;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.217;QD=17.96;ReadPosRankSum=2.408;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:2,117:120:99:2188,252,0 chrX 292518 . A T 1740 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.12;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1773,189,0 chrX 292541 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.85;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1700,183,0 chrX 292616 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4512;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.35;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1390,159,0 chrX 292624 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2399;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.90;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1436,162,0 chrX 292672 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.63;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1602,177,0 chrX 292752 . A T 2269 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.21;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2302,252,0 chrX 292848 . T A 1751 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=20.60;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1784,192,0 chrX 292851 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=20.21;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1690,189,0 chrX 292896 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=84;Dels=0.00;FS=3.064;HaplotypeScore=16.5856;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.105;QD=18.31;ReadPosRankSum=2.390;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1571,177,0 chrX 292930 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.55;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2059,228,0 chrX 292958 . T C 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.669;QD=21.45;ReadPosRankSum=1.693;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1921,219,0 chrX 293043 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.96;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1455,156,0 chrX 293044 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.70;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1491,159,0 chrX 293070 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=14.69;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1223,135,0 chrX 293099 . C A 172.54 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.453;DP=129;Dels=0.00;FS=5.781;HaplotypeScore=76.3739;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=2.563;QD=1.34;ReadPosRankSum=2.228;SB=-8.835e+02 GT:AD:DP:GQ:PL 1/1:26,103:129:2:202,2,0 chrX 293102 . C A 44.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.875;DP=139;Dels=0.00;FS=6.361;HaplotypeScore=84.9050;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=-0.377;QD=0.32;ReadPosRankSum=-5.427;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:63,46:139:74:74,0,120 chrX 293105 . C T 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=141;Dels=0.00;FS=2.158;HaplotypeScore=86.8772;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=0;MQRankSum=0.710;QD=0.32;ReadPosRankSum=-2.321;SB=-5.540e+02 GT:AD:DP:GQ:PL 0/1:64,77:141:75:75,0,75 chrX 293121 . G A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DP=142;Dels=0.00;FS=7.223;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=29.86;MQ0=0;MQRankSum=0.117;QD=0.28;ReadPosRankSum=1.768;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:101,41:142:70:70,0,152 chrX 293133 . G A 288.47 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DP=150;Dels=0.00;FS=4.854;HaplotypeScore=117.5941;MLEAC=1;MLEAF=0.500;MQ=33.58;MQ0=0;MQRankSum=1.329;QD=1.92;ReadPosRankSum=4.135;SB=-3.765e+02 GT:AD:DP:GQ:PL 0/1:47,55:150:25:317,0,25 chrX 293142 . C A 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.436;DP=151;Dels=0.00;FS=10.159;HaplotypeScore=42.2444;MLEAC=1;MLEAF=0.500;MQ=35.20;MQ0=0;MQRankSum=-2.913;QD=0.46;ReadPosRankSum=-9.243;SB=-6.240e+02 GT:AD:DP:GQ:PL 0/1:65,85:151:99:99,0,442 chrX 293368 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=22.40;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1870,198,0 chrX 293436 . G A 1541 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=20.28;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1574,171,0 chrX 293475 . T C,G 96.86 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.582;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=33.6722;MLEAC=1,1;MLEAF=0.500,0.500;MQ=39.35;MQ0=0;MQRankSum=-0.753;QD=2.02;ReadPosRankSum=1.582;SB=-4.159e+02 GT:AD:DP:GQ:PL 1/2:1,4,41:46:30:155,109,103,45,0,30 chrX 293490 . A T 731 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=12.60;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:87:764,87,0 chrX 293499 . A G 613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.264;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;MQRankSum=-0.558;QD=10.39;ReadPosRankSum=0.851;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:78:646,78,0 chrX 293502 . T C 666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.051;HaplotypeScore=3.1104;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=-1.051;QD=10.92;ReadPosRankSum=1.619;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:84:699,84,0 chrX 293517 . T C 935 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=13.36;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:968,114,0 chrX 293604 . T A 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.43;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1897,204,0 chrX 293664 . T C 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.375;QD=20.92;ReadPosRankSum=1.592;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1581,174,0 chrX 293700 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.33;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1842,201,0 chrX 293718 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=2.587;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.304;QD=20.26;ReadPosRankSum=2.922;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1856,204,0 chrX 293985 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=11.6728;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.63;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1214,132,0 chrX 294039 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.225;QD=21.72;ReadPosRankSum=1.690;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1814,198,0 chrX 294093 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=23.68;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1856,198,0 chrX 294232 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=20.20;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1043,114,0 chrX 294234 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=20.56;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1020,111,0 chrX 294333 . T C 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.632;QD=19.95;ReadPosRankSum=1.677;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1290,141,0 chrX 294429 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=0.702;QD=15.65;ReadPosRankSum=1.685;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1207,132,0 chrX 294473 . G A 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.116;DP=108;Dels=0.00;FS=9.323;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;MQRankSum=1.761;QD=5.60;ReadPosRankSum=8.857;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:46,62:108:69:638,69,0 chrX 294494 . C T 46.97 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=0.81;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:9:79,9,0 chrX 294543 . C T 519 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=7.21;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:60:552,60,0 chrX 294549 . T G 536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.439;DP=80;Dels=0.00;FS=11.916;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;MQRankSum=-2.942;QD=6.70;ReadPosRankSum=3.677;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:5,75:80:66:569,66,0 chrX 294578 . A T 1109 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.90;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1142,123,0 chrX 294584 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=11.73;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1089,126,0 chrX 294608 . A G 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=4.168;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=0.258;QD=15.17;ReadPosRankSum=1.695;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1474,171,0 chrX 294826 . G A 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=59;Dels=0.02;FS=3.409;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=0.699;QD=17.42;ReadPosRankSum=1.368;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1061,117,0 chrX 294827 . A G 1000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=57;Dels=0.02;FS=5.987;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.274;QD=17.54;ReadPosRankSum=2.875;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1033,117,0 chrX 294947 . G T 2218 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.80;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2251,240,0 chrX 294972 . T A 2322 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.3870;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.19;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2355,255,0 chrX 295035 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=16.34;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1700,189,0 chrX 295057 . T A 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=2.876;HaplotypeScore=8.7035;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.066;QD=19.94;ReadPosRankSum=2.397;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1887,201,0 chrX 295154 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.11;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1464,156,0 chrX 295184 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.21;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1330,144,0 chrX 295294 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.53;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1775,201,0 chrX 295430 . G T 1839 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.43;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1872,201,0 chrX 295604 . T C 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.784;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.990;QD=23.10;ReadPosRankSum=1.661;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2320,255,0 chrX 295664 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.84;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2020,216,0 chrX 296106 . A T 1252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.689;QD=15.65;ReadPosRankSum=1.689;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1285,120,0 chrX 296534 . A G 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=76;Dels=0.00;FS=7.241;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.220;QD=16.12;ReadPosRankSum=2.382;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:2,71:76:99:1258,147,0 chrX 296668 . T C 966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.393;QD=18.94;ReadPosRankSum=1.664;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:999,111,0 chrX 296872 . T A 1057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.336;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=7.9079;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=0.750;QD=15.78;ReadPosRankSum=1.629;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1090,114,0 chrX 296895 . G A 748 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=11.87;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:90:781,90,0 chrX 296897 . T C 645 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=10.75;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:75:678,75,0 chrX 296919 . G A 802 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=11.79;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:835,93,0 chrX 296964 . T G 668 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=11.32;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:78:701,78,0 chrX 296966 . A G 641 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=10.86;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:78:674,78,0 chrX 297012 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=13.47;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:814,93,0 chrX 297025 . G A 616 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=10.27;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:69:649,69,0 chrX 297043 . T C 780 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=13.45;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:813,90,0 chrX 297092 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.63;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1232,129,0 chrX 297650 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.49;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1137,126,0 chrX 297732 . T G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=65;Dels=0.00;FS=5.971;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.234;QD=20.65;ReadPosRankSum=2.892;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1375,150,0 chrX 297958 . C T 803 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.06;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:836,90,0 chrX 297976 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=16.27;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:93:863,93,0 chrX 298682 . T G 457 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=13.44;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:54:490,54,0 chrX 298833 . G T 837 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.60;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:870,102,0 chrX 298915 . C T 542 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.68;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:575,63,0 chrX 299141 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.418;QD=23.31;ReadPosRankSum=1.673;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1385,156,0 chrX 299346 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1419,156,0 chrX 299757 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.41;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1217,135,0 chrX 299820 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.24;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1308,144,0 chrX 299940 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.13;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1402,153,0 chrX 299961 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.88;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1405,162,0 chrX 300176 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.54;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1471,162,0 chrX 300360 . A C 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.947;QD=19.35;ReadPosRankSum=1.640;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1523,174,0 chrX 300419 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1004;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.77;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1731,183,0 chrX 300626 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.72;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1944,204,0 chrX 300732 . A T 1773 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.73;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1806,192,0 chrX 300806 . G T 2246 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.99;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2279,249,0 chrX 300846 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7403;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.42;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2092,237,0 chrX 301020 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.26;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1574,177,0 chrX 301035 . G T 1641 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.31;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1674,180,0 chrX 301867 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.69;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1486,162,0 chrX 302097 . A G 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.080;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.732;QD=19.08;ReadPosRankSum=1.692;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1693,195,0 chrX 302193 . T C 2401 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2434,270,0 chrX 302882 . G A 1903 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1936,207,0 chrX 303071 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.00;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1692,189,0 chrX 303269 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.26;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1613,177,0 chrX 303316 . C A 1819 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.74;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1852,198,0 chrX 303455 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.53;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1983,228,0 chrX 303480 . T C 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.906;QD=21.21;ReadPosRankSum=1.700;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2345,267,0 chrX 303549 . G C 2982 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.59;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:3015,330,0 chrX 303556 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.97;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2670,309,0 chrX 303606 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.19;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1810,195,0 chrX 303780 . T A 2372 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.37;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2405,258,0 chrX 303783 . T A 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.409;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.729;QD=20.73;ReadPosRankSum=1.702;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2417,258,0 chrX 304146 . T C 2644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=3.046;HaplotypeScore=3.4279;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.546;QD=22.99;ReadPosRankSum=2.407;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2677,300,0 chrX 304262 . T A 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.641;QD=22.63;ReadPosRankSum=1.590;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1685,180,0 chrX 304682 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.21;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1367,150,0 chrX 304829 . G C 1241 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1274,141,0 chrX 305004 . A G 915 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.79;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:948,102,0 chrX 305082 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.54;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1420,162,0 chrX 305112 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.99;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1586,168,0 chrX 305635 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.590;DP=100;Dels=0.00;FS=12.421;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.253;QD=20.29;ReadPosRankSum=3.717;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:5,95:100:99:2062,225,0 chrX 305872 . A C 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=3.208;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.270;QD=21.19;ReadPosRankSum=1.694;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1961,216,0 chrX 305977 . G T 1668 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.10;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1701,183,0 chrX 306157 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=15.78;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1043,117,0 chrX 306161 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.21;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1037,114,0 chrX 306617 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=3.4195;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.66;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1586,177,0 chrX 306623 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.04;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1651,180,0 chrX 306632 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.38;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1597,171,0 chrX 307097 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1502;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.45;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2017,219,0 chrX 307104 . A G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.663;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.725;QD=21.93;ReadPosRankSum=1.692;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1941,213,0 chrX 307136 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.24;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1091,117,0 chrX 307226 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.03;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1187,129,0 chrX 307265 . C T 706 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=12.39;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:81:739,81,0 chrX 307271 . A G 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-1.263;QD=11.36;ReadPosRankSum=1.674;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:81:703,81,0 chrX 307287 . A G 690 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=11.90;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:81:723,81,0 chrX 307299 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=13.70;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:96:910,96,0 chrX 307370 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.34;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1655,183,0 chrX 307670 . G A 695 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.86;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:81:728,81,0 chrX 307766 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1216,132,0 chrX 309483 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.04;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1106,117,0 chrX 309498 . C T 994 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.61;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1027,108,0 chrX 309564 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.18;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:859,96,0 chrX 310519 . A G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.577;QD=17.75;ReadPosRankSum=1.664;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:938,105,0 chrX 310520 . C A 952 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.04;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:985,105,0 chrX 310533 . C T 926 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.16;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:959,102,0 chrX 310552 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.80;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1024,114,0 chrX 310656 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.55;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1086,120,0 chrX 310843 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.75;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2058,219,0 chrX 310994 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.42;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1535,171,0 chrX 311627 . A C 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.29;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1656,183,0 chrX 311660 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.72;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1944,210,0 chrX 311840 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.02;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1925,204,0 chrX 311865 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.26;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2138,234,0 chrX 311915 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.848;QD=20.60;ReadPosRankSum=1.695;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1969,219,0 chrX 312403 . T C 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.332;DP=125;Dels=0.00;FS=2.398;HaplotypeScore=6.4138;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.213;QD=22.09;ReadPosRankSum=3.374;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:4,121:125:99:2794,309,0 chrX 312482 . T G 2341 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2374,264,0 chrX 312940 . T G 1570 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.51;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1603,180,0 chrX 313030 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.23;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1566,171,0 chrX 313196 . G T 1692 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.14;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1725,189,0 chrX 313211 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.62;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1583,171,0 chrX 313349 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.72;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1445,156,0 chrX 313385 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.14;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1534,174,0 chrX 313409 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.643;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-1.525;QD=19.99;ReadPosRankSum=1.681;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1372,159,0 chrX 313500 . G T 2173 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=16.2932;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.11;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2206,243,0 chrX 313670 . T C 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=99;Dels=0.00;FS=2.781;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.783;QD=19.48;ReadPosRankSum=2.400;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1962,213,0 chrX 313709 . A T 2091 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.91;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2124,228,0 chrX 313739 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=19.46;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1901,204,0 chrX 313745 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=19.07;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1902,204,0 chrX 313782 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=16.64;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1497,159,0 chrX 313793 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.59;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1493,165,0 chrX 313822 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=12.60;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1104,123,0 chrX 313829 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.71;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1243,135,0 chrX 313850 . G T 1433 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=15.41;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1466,156,0 chrX 313947 . T C 3359.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.4295;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.86;SB=-1.903e+03 GT:AD:DP:GQ:PL 1/1:0,158:161:99:3359,375,0 chrX 314406 . C G 2535 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.95;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2568,285,0 chrX 314438 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.69;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2397,264,0 chrX 314471 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.97;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2633,291,0 chrX 314594 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.63;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1207,129,0 chrX 314615 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.29;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1222,132,0 chrX 315096 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.60;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1930,216,0 chrX 315237 . T C 2105 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.48;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2138,243,0 chrX 315571 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.62;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1302,144,0 chrX 315866 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4131;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.61;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2156,228,0 chrX 315888 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.05;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2018,228,0 chrX 316590 . T C 2626 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6998;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.70;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2659,297,0 chrX 317223 . T G 1860 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=18.42;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1893,210,0 chrX 317224 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=1.559;QD=18.18;ReadPosRankSum=0.485;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1869,207,0 chrX 317257 . C G 1958 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.30;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1991,222,0 chrX 318240 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1852,213,0 chrX 318543 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0580;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.20;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1787,192,0 chrX 318721 . T A 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=94;Dels=0.00;FS=7.972;HaplotypeScore=6.2120;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.556;QD=13.31;ReadPosRankSum=2.561;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:5,89:94:99:1284,102,0 chrX 318723 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=14.03;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1352,147,0 chrX 318778 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.97;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1866,201,0 chrX 318879 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.54;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1720,192,0 chrX 318887 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.08;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1588,180,0 chrX 318923 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.61;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1301,147,0 chrX 318987 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.08;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1479,159,0 chrX 319037 . A C 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.135;QD=17.21;ReadPosRankSum=1.673;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1031,114,0 chrX 319781 . G T 1622 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.8550;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.07;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1655,183,0 chrX 319840 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.1994;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.11;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1481,159,0 chrX 319872 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.4431;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.56;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1388,153,0 chrX 319934 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.26;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1903,207,0 chrX 319952 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.359;QD=16.40;ReadPosRankSum=1.699;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1771,198,0 chrX 319963 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.73;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1788,189,0 chrX 320027 . T C 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.855;QD=18.49;ReadPosRankSum=1.640;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1420,156,0 chrX 320192 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=2.783;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.174;QD=20.76;ReadPosRankSum=2.323;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1652,186,0 chrX 320259 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.57;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1845,198,0 chrX 321279 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.56;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1061,117,0 chrX 321299 . T C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.510;QD=20.61;ReadPosRankSum=1.664;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1084,120,0 chrX 321305 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.48;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1150,123,0 chrX 321374 . T C 507 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=14.49;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:540,60,0 chrX 321381 . C T 498 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=14.23;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:531,57,0 chrX 321383 . G A 571 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=15.43;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:604,66,0 chrX 321406 . G A 808 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=14.43;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:841,87,0 chrX 321433 . T C 721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=8.895;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.833;QD=13.87;ReadPosRankSum=2.355;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:84:754,84,0 chrX 321436 . G A 723 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=13.90;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:81:756,81,0 chrX 321602 . G A 879 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.11;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:912,102,0 chrX 322216 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.87;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1870,198,0 chrX 322237 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.05;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1801,195,0 chrX 322290 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=87;Dels=0.00;FS=3.059;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.014;QD=19.89;ReadPosRankSum=2.393;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1763,198,0 chrX 322508 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.13;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1449,159,0 chrX 322636 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.89;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1346,147,0 chrX 322729 . A G 1006 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.97;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1039,132,0 chrX 322730 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=15.97;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1055,132,0 chrX 322763 . C A 938 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=17.70;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:971,105,0 chrX 323004 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.020;QD=20.81;ReadPosRankSum=1.651;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1823,198,0 chrX 323077 . C A 1439 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.71;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1472,168,0 chrX 323078 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.92;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1560,171,0 chrX 323341 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.32;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1824,201,0 chrX 323385 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.92;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1874,216,0 chrX 323703 . T C 1650 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.71;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1683,183,0 chrX 323823 . A G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.299;QD=21.96;ReadPosRankSum=1.540;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1636,183,0 chrX 324405 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.16;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1404,153,0 chrX 324913 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.367;QD=21.53;ReadPosRankSum=1.680;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1454,162,0 chrX 324918 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=5.576;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-1.093;QD=21.00;ReadPosRankSum=1.679;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1398,156,0 chrX 324924 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=20.81;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1261,141,0 chrX 325190 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.9067;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.02;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2240,240,0 chrX 325332 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.75;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1850,204,0 chrX 325369 . A T 1927 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.90;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1960,210,0 chrX 325803 . C T 3407.01 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.02;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3407,366,0 chrX 326422 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.03;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2076,228,0 chrX 327178 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.02;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1486,165,0 chrX 327501 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.33;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1853,198,0 chrX 327685 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.30;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1076,120,0 chrX 327851 . A G 1329 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=16.82;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1362,150,0 chrX 328430 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.91;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1014,114,0 chrX 328451 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=3.060;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.780;QD=17.93;ReadPosRankSum=2.377;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1252,141,0 chrX 328877 . G T 1497 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1530,162,0 chrX 329172 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.51;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1828,201,0 chrX 329323 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.63;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1504,159,0 chrX 329730 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1851,210,0 chrX 330001 . T C 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=96;Dels=0.00;FS=10.950;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.242;QD=19.27;ReadPosRankSum=2.906;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:1883,210,0 chrX 330191 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1626,186,0 chrX 330470 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.77;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1298,144,0 chrX 330989 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.82;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1459,162,0 chrX 330991 . T C 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.592;QD=16.54;ReadPosRankSum=1.688;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1356,156,0 chrX 333136 . C T 3371.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=14.2349;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.62;SB=-1.859e+03 GT:AD:DP:GQ:PL 1/1:0,147:149:99:3371,357,0 chrX 333852 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1379;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.52;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1613,174,0 chrX 334125 . C T 1780 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.54;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1813,195,0 chrX 334204 . A G 2403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.010;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.490;QD=22.46;ReadPosRankSum=1.634;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2436,273,0 chrX 334513 . G C 1633 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.41;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1666,186,0 chrX 334858 . C T 1936 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.33;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1969,213,0 chrX 335070 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.28;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1209,138,0 chrX 335122 . A T 1122 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1155,123,0 chrX 335178 . C G 1020 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.89;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1053,117,0 chrX 335215 . T A 815 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=15.98;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:848,96,0 chrX 335275 . C G 1410 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.03;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1443,159,0 chrX 335305 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.25;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1568,174,0 chrX 335788 . C A 1723 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.10;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1756,189,0 chrX 337192 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.54;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1584,168,0 chrX 337203 . C G 1310 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.99;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1343,147,0 chrX 337260 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.38;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:989,111,0 chrX 337263 . A C 1039 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.91;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1072,120,0 chrX 337272 . T G 1094 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.23;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1127,126,0 chrX 337436 . A T 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.787;QD=19.45;ReadPosRankSum=1.543;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1103,126,0 chrX 337551 . T C 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.825;QD=23.25;ReadPosRankSum=1.567;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1986,219,0 chrX 337579 . C T 1906 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.24;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1939,204,0 chrX 339013 . A C 2438 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.47;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2471,276,0 chrX 339346 . G A 3005 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.10;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3038,339,0 chrX 339657 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.77;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2079,219,0 chrX 339669 . C G 1711 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.01;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1744,201,0 chrX 339894 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1499;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.72;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1771,195,0 chrX 340095 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.27;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2245,240,0 chrX 341121 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1804,201,0 chrX 341290 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=17.65;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1445,153,0 chrX 341296 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.17;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1505,168,0 chrX 341422 . C G 2524 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.74;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2557,285,0 chrX 341469 . G A 2413 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8393;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.35;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2446,273,0 chrX 341586 . T C 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.273;QD=20.37;ReadPosRankSum=1.690;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1744,198,0 chrX 341631 . G C 1127 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=17.08;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1160,129,0 chrX 342263 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.58;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1124,123,0 chrX 342290 . T C 796 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=16.58;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:829,93,0 chrX 342457 . C G 751 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.77;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:87:784,87,0 chrX 342558 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1119,123,0 chrX 342956 . A T 2221 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.3815;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.56;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2254,246,0 chrX 343373 . A C 2676 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.58;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,126:130:99:2709,297,0 chrX 343445 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.8813;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.05;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2727,306,0 chrX 343823 . T C 1699 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.47;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1732,198,0 chrX 343856 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.59;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1674,183,0 chrX 344213 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.48;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1221,135,0 chrX 344460 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.31;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1930,213,0 chrX 344732 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.98;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1684,186,0 chrX 344747 . A C 1921 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.21;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1954,216,0 chrX 346488 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.34;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1503,171,0 chrX 346495 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=17.71;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1361,147,0 chrX 346735 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.00;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1953,207,0 chrX 346858 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.52;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1542,171,0 chrX 347791 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.29;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2199,234,0 chrX 347819 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=102;Dels=0.00;FS=9.425;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=1.248;QD=20.77;ReadPosRankSum=2.931;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2152,249,0 chrX 347852 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.31;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2023,225,0 chrX 348200 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.60;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1954,210,0 chrX 348206 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.44;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,100:105:99:1759,195,0 chrX 348292 . A G 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=132;Dels=0.00;FS=5.195;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.497;QD=19.55;ReadPosRankSum=1.652;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2613,291,0 chrX 348305 . G A 2729 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.99;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2762,297,0 chrX 348578 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=16.73;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1505,162,0 chrX 348582 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=17.10;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1589,177,0 chrX 348652 . A G 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;MQRankSum=-0.336;QD=14.23;ReadPosRankSum=3.331;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:4,134:138:99:1997,222,0 chrX 348689 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=16.54;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1935,207,0 chrX 348770 . T C 2719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.701;QD=24.06;ReadPosRankSum=1.701;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2752,306,0 chrX 349396 . T A 1279 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1312,144,0 chrX 349631 . T C 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.393;QD=21.58;ReadPosRankSum=1.694;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2018,225,0 chrX 351163 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.18;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1770,192,0 chrX 351479 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.88;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2002,222,0 chrX 351617 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1136,126,0 chrX 351924 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.49;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1467,156,0 chrX 352052 . C A 1017 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.49;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1050,120,0 chrX 352101 . T C 1571 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.16;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1604,180,0 chrX 352209 . C T 2487 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.44;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2520,273,0 chrX 352365 . C A 1473 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.64;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1506,162,0 chrX 352608 . G A 2264 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.19;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2297,246,0 chrX 352620 . G C 2034 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1974;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.69;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2067,228,0 chrX 353165 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.95;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1132,126,0 chrX 353878 . A C 1608 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=20.62;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1641,180,0 chrX 353888 . A T 1614 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=20.69;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1647,177,0 chrX 353927 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=17.62;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:914,96,0 chrX 354030 . T A 1115 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=19.22;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1148,123,0 chrX 354057 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=16.94;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1083,117,0 chrX 354070 . G T 988 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=15.94;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1021,111,0 chrX 354099 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=12.09;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1109,120,0 chrX 354103 . C A 1112 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=12.22;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1145,123,0 chrX 354137 . A T 1188 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=13.20;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1221,132,0 chrX 354138 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=13.24;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1238,132,0 chrX 354152 . C A 1332 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0448;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=12.57;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1365,147,0 chrX 354200 . T A 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=6.0767;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.630;QD=16.72;ReadPosRankSum=0.276;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1504,162,0 chrX 354215 . A C 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.5748;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.583;QD=17.65;ReadPosRankSum=2.679;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:3,82:86:99:1551,171,0 chrX 354287 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.94;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1662,177,0 chrX 354446 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;QD=20.85;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1930,216,0 chrX 354475 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;QD=22.21;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1654,189,0 chrX 354628 . G A 297.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.458;DP=31;Dels=0.00;FS=37.389;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=1;MQRankSum=1.373;QD=9.60;ReadPosRankSum=0.275;SB=-6.468e-01 GT:AD:DP:GQ:PL 1/1:5,26:31:11:330,11,0 chrX 354634 . C A 242.79 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=27;Dels=0.00;FS=41.746;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=1;MQRankSum=1.102;QD=8.99;ReadPosRankSum=0.817;SB=-7.982e-01 GT:AD:DP:GQ:PL 1/1:4,23:27:10:275,10,0 chrX 354647 . T A 133.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=14;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=0;MQRankSum=0.744;QD=9.51;ReadPosRankSum=1.240;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:1,13:14:18:166,18,0 chrX 354655 . C T 184.03 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=12.27;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:217,24,0 chrX 354667 . T C 266 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=14.78;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:33:299,33,0 chrX 354679 . C A 334 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.56;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:39:367,39,0 chrX 354692 . T C 508 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=1;QD=18.14;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:60:541,60,0 chrX 355129 . C T 134.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=1;MQRankSum=0.751;QD=13.41;ReadPosRankSum=0.751;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:1,9:10:18:167,18,0 chrX 355187 . T G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=0.56;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,35:37:6:52,6,0 chrX 355339 . G C 847 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=17.29;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:880,102,0 chrX 355344 . C T 813 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=16.59;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:846,96,0 chrX 355353 . C A 780 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=15.60;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:813,93,0 chrX 355361 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=1;QD=13.90;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:84:742,84,0 chrX 355538 . A T 449 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=8.31;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:57:482,57,0 chrX 355540 . G C 550 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=10.19;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:63:583,63,0 chrX 355564 . T G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=-0.917;QD=13.28;ReadPosRankSum=1.681;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:936,105,0 chrX 355601 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.64;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1307,141,0 chrX 355696 . A G 2446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=5.130;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.561;QD=24.22;ReadPosRankSum=1.698;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2479,273,0 chrX 355877 . T C 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=47.2749;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.832;QD=19.68;ReadPosRankSum=0.416;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1017,111,0 chrX 355891 . C G 915 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=48.1749;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;QD=16.64;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:948,105,0 chrX 355949 . T C 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=142;Dels=0.00;FS=8.580;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.060;QD=16.87;ReadPosRankSum=3.395;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:4,134:142:99:2429,273,0 chrX 355957 . A G 2929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=3.458;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-1.392;QD=18.90;ReadPosRankSum=1.709;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:1,152:155:99:2962,330,0 chrX 356419 . T G 2390 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.07;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2423,276,0 chrX 356605 . G A 2241 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.66;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2274,252,0 chrX 356629 . T C 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=114;Dels=0.00;FS=2.802;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.128;QD=18.97;ReadPosRankSum=2.199;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:2,106:114:99:2196,252,0 chrX 356743 . G C 1623 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1656,180,0 chrX 356833 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.24;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1498,168,0 chrX 357097 . T G 2379 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2412,276,0 chrX 357352 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.270;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.0179;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.666;QD=18.58;ReadPosRankSum=-0.082;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,104:110:99:2077,215,0 chrX 357781 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.24;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1481,165,0 chrX 358154 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.7067;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.58;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:815,87,0 chrX 358201 . G A 217.01 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=9.86;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,21:22:27:250,27,0 chrX 358208 . C G 183.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=9.15;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,19:20:24:216,24,0 chrX 358215 . T C 86.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.927;DP=24;Dels=0.00;FS=6.862;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;MQRankSum=0.116;QD=3.59;ReadPosRankSum=0.811;SB=-4.426e+01 GT:AD:DP:GQ:PL 1/1:11,13:24:15:119,15,0 chrX 358261 . A G 343 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.06;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:376,42,0 chrX 358354 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.37;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1350,147,0 chrX 358391 . G C 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.13;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1660,186,0 chrX 358755 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.49;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1697,186,0 chrX 358915 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1396,156,0 chrX 359859 . G T 309 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=9.97;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:342,39,0 chrX 360186 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.412;QD=24.06;ReadPosRankSum=1.679;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1597,177,0 chrX 360317 . G T 1136 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1169,126,0 chrX 360746 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.26;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1311,147,0 chrX 361124 . A G 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=75;Dels=0.00;FS=6.322;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.417;QD=16.91;ReadPosRankSum=2.383;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1301,150,0 chrX 361340 . G C 1854 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.07;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1887,210,0 chrX 361485 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.291;QD=19.30;ReadPosRankSum=1.701;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2175,243,0 chrX 361949 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5619;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.44;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2057,219,0 chrX 362475 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=15.24;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:1908,219,0 chrX 362478 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.64;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1926,210,0 chrX 363069 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3840;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.02;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2007,219,0 chrX 363087 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=15.75;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1828,207,0 chrX 363678 . T C 1186 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.81;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1219,141,0 chrX 363726 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.89;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1091,117,0 chrX 364028 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1429,162,0 chrX 364146 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.60;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1298,141,0 chrX 364186 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.92;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1348,150,0 chrX 364397 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.09;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1973,210,0 chrX 364569 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.4901;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.613;QD=22.68;ReadPosRankSum=1.493;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2006,228,0 chrX 364721 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.15;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2004,216,0 chrX 364761 . T C 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.647;QD=21.08;ReadPosRankSum=1.690;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1804,198,0 chrX 364938 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.99;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1812,201,0 chrX 365022 . G A 3147 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6804;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.14;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3180,357,0 chrX 365916 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.96;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1640,189,0 chrX 366482 . A C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=75;Dels=0.00;FS=10.347;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.754;QD=17.00;ReadPosRankSum=2.850;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,71:75:99:1308,144,0 chrX 366671 . C A 1383 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=17.51;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1416,147,0 chrX 366673 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=16.36;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1309,147,0 chrX 366855 . A G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=4.058;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=1;MQRankSum=-1.732;QD=21.28;ReadPosRankSum=1.691;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1863,213,0 chrX 366948 . G A 742 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=1;QD=13.25;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:775,84,0 chrX 366966 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=1;QD=12.02;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:72:658,72,0 chrX 367200 . G A 1325.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;DP=103;Dels=0.00;FS=9.297;HaplotypeScore=6.5710;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=2;MQRankSum=-2.418;QD=12.86;ReadPosRankSum=-0.885;SB=-8.910e+02 GT:AD:DP:GQ:PL 0/1:19,81:103:99:1355,0,109 chrX 367212 . C T 1492.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=114;Dels=0.00;FS=18.505;HaplotypeScore=7.5314;MLEAC=1;MLEAF=0.500;MQ=46.14;MQ0=1;MQRankSum=-2.582;QD=13.09;ReadPosRankSum=-2.720;SB=-9.080e+02 GT:AD:DP:GQ:PL 0/1:21,91:114:99:1522,0,101 chrX 367258 . C G 1176.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DP=109;Dels=0.00;FS=29.519;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=50.53;MQ0=0;MQRankSum=-0.474;QD=10.79;ReadPosRankSum=1.729;SB=-8.600e+02 GT:AD:DP:GQ:PL 0/1:24,84:109:99:1206,0,169 chrX 367284 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=20.10;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1902,204,0 chrX 367390 . A G 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=86;Dels=0.00;FS=2.846;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.797;QD=17.58;ReadPosRankSum=2.392;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1545,174,0 chrX 367399 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=1.599;QD=18.51;ReadPosRankSum=1.110;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1477,165,0 chrX 367594 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.29;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1482,156,0 chrX 368620 . T A 987 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.43;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1020,111,0 chrX 369027 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1214,138,0 chrX 369394 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1529,162,0 chrX 369900 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.80;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1236,138,0 chrX 370110 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.18;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1548,165,0 chrX 370407 . T C 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.828;QD=20.93;ReadPosRankSum=1.619;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1959,216,0 chrX 372156 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.48;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1502,162,0 chrX 372312 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.03;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1584,180,0 chrX 372513 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.36;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1849,204,0 chrX 373143 . A G 486 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,20:22:60:519,60,0 chrX 373775 . G C 1312 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.58;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1345,153,0 chrX 374131 . A G 893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.554;QD=17.86;ReadPosRankSum=1.663;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:926,102,0 chrX 374244 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.51;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1676,180,0 chrX 374405 . C A 940 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.80;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:973,105,0 chrX 374406 . A T 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=13.651;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;MQRankSum=-0.898;QD=19.00;ReadPosRankSum=1.965;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1002,108,0 chrX 374698 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.38;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1032,114,0 chrX 374723 . T C 710 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=13.15;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:87:743,87,0 chrX 374836 . A G 929 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=16.02;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:962,108,0 chrX 374851 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=16.69;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1068,120,0 chrX 375100 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.87;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:837,90,0 chrX 375115 . T C 616 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.40;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:649,72,0 chrX 375392 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.27;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1569,168,0 chrX 375706 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.71;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1334,147,0 chrX 375921 . T G 1563 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.454;DP=88;Dels=0.00;FS=10.644;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;MQRankSum=-1.733;QD=17.76;ReadPosRankSum=2.919;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:3,84:88:99:1596,177,0 chrX 375928 . T A 1642 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=20.78;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1675,183,0 chrX 375929 . G A 1710 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=21.65;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1743,186,0 chrX 375968 . T C 1036 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.18;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1069,123,0 chrX 375981 . T C 804 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=17.48;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:837,93,0 chrX 376071 . C T 886 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.15;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:919,99,0 chrX 376116 . G T 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.496;QD=22.75;ReadPosRankSum=-0.394;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1034,114,0 chrX 377089 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.21;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1543,165,0 chrX 377112 . G C 1023 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.88;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1056,117,0 chrX 377246 . A T 994 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.75;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1027,111,0 chrX 377270 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.70;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:989,108,0 chrX 377543 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=25.97;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1643,177,0 chrX 377632 . T A 1222 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=23.50;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1255,135,0 chrX 377783 . G T 2465 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;QD=19.72;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2498,276,0 chrX 377828 . G C 1412 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=14.41;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1445,168,0 chrX 377835 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=15.28;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1500,174,0 chrX 377853 . A C 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;MQRankSum=-1.690;QD=13.36;ReadPosRankSum=1.690;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1142,129,0 chrX 377861 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=13.59;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1066,117,0 chrX 377874 . G T 851 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=14.18;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:884,93,0 chrX 377883 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=13.51;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:857,90,0 chrX 377896 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;QD=12.02;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:622,69,0 chrX 377922 . A G 712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;MQRankSum=0.752;QD=13.43;ReadPosRankSum=1.667;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:81:745,81,0 chrX 378006 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=16.33;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1274,135,0 chrX 378023 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;DP=71;Dels=0.00;FS=4.950;HaplotypeScore=7.8237;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.640;QD=15.39;ReadPosRankSum=3.360;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:5,66:71:99:1126,126,0 chrX 378025 . G A 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=67;Dels=0.00;FS=2.547;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=1.324;QD=16.36;ReadPosRankSum=2.894;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1129,123,0 chrX 378111 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.17;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1394,153,0 chrX 378131 . C T 675 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=11.44;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:81:708,81,0 chrX 378171 . A G 547 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=12.72;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:580,66,0 chrX 378185 . T G 508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;MQRankSum=-1.501;QD=11.04;ReadPosRankSum=1.655;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:63:541,63,0 chrX 378189 . G C 533 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=12.11;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:66:566,66,0 chrX 378204 . T G 536 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.11;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:569,66,0 chrX 378208 . A G 493 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=13.32;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:526,60,0 chrX 378211 . A T 494 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=13.00;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:527,60,0 chrX 378217 . T A 501 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=13.54;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:534,60,0 chrX 378252 . T A 539 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;QD=14.97;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:572,66,0 chrX 378266 . T A 632 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=15.05;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:665,75,0 chrX 378306 . T G 883 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=17.66;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:916,102,0 chrX 378328 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=17.42;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:817,87,0 chrX 378337 . G C 836 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=16.39;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:96:869,96,0 chrX 378552 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.278;QD=20.67;ReadPosRankSum=1.689;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1707,186,0 chrX 378608 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.59;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1795,192,0 chrX 378869 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.59;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1576,174,0 chrX 378873 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.93;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1521,162,0 chrX 379232 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.78;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2211,246,0 chrX 379268 . T C 2639 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.36;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2672,297,0 chrX 379586 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.73;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1540,174,0 chrX 379742 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1921,216,0 chrX 380369 . G A 2898 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.35;SB=-6.101e+01 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2931,309,0 chrX 380654 . A G 2893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=162;Dels=0.00;FS=6.266;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.009;QD=17.86;ReadPosRankSum=2.419;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:2,160:162:99:2926,324,0 chrX 380706 . T C 3600.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=191;Dels=0.00;FS=4.154;HaplotypeScore=8.8153;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.331;QD=18.85;ReadPosRankSum=1.714;SB=-1.847e+03 GT:AD:DP:GQ:PL 1/1:1,189:191:99:3600,382,0 chrX 380822 . G T 2021 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.30;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2054,225,0 chrX 380992 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=5.441;HaplotypeScore=9.9944;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.962;QD=16.43;ReadPosRankSum=1.705;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2119,237,0 chrX 381011 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=14.75;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1641,177,0 chrX 381023 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.258;QD=12.49;ReadPosRankSum=1.695;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1220,138,0 chrX 382316 . C A 592.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;DP=88;Dels=0.00;FS=1.791;HaplotypeScore=12.8036;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=1.072;QD=6.73;ReadPosRankSum=-0.306;SB=-3.680e+02 GT:AD:DP:GQ:PL 0/1:44,42:88:99:622,0,690 chrX 382481 . T C 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=3.053;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.036;QD=22.51;ReadPosRankSum=2.306;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2352,261,0 chrX 382565 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.5629;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.50;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2197,249,0 chrX 383417 . T C 1043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=5.141;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.167;QD=21.29;ReadPosRankSum=1.662;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1076,126,0 chrX 383637 . A G 1414 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=24.81;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1447,159,0 chrX 385991 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.20;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1377,147,0 chrX 386286 . A C 500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=12.50;ReadPosRankSum=1.646;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:60:533,60,0 chrX 386494 . G T 672 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:705,78,0 chrX 386613 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.37;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1081,117,0 chrX 387413 . A G 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.073;QD=22.29;ReadPosRankSum=1.650;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:969,108,0 chrX 387467 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.06;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1381,153,0 chrX 387637 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1710,186,0 chrX 388199 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.68;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1154,123,0 chrX 388253 . T C 327 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=16.6648;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=11.28;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:39:360,39,0 chrX 388288 . A G 330 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=6.73;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:42:363,42,0 chrX 388629 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.10;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,153,0 chrX 388820 . A C 1203 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.40;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1236,141,0 chrX 388825 . T C 1243 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.42;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1276,141,0 chrX 388844 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.22;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1417,156,0 chrX 389413 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.15;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1894,201,0 chrX 389732 . T C 1291 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.17;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1324,150,0 chrX 389929 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.74;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:54:99:991,105,0 chrX 390902 . G C 1029 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.79;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1062,117,0 chrX 390905 . A G 1028 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=20.16;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1061,117,0 chrX 391129 . C G 1049 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.85;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1082,120,0 chrX 391152 . C T 912 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.73;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:945,102,0 chrX 391247 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.200;DP=82;Dels=0.00;FS=7.252;HaplotypeScore=68.6917;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.786;QD=17.26;ReadPosRankSum=1.834;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,78:82:99:1448,159,0 chrX 391657 . T C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=6.592;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.014;QD=17.67;ReadPosRankSum=2.393;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1588,180,0 chrX 391693 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=15.97;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1087,120,0 chrX 391904 . A G 2339 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5397;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.07;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2372,279,0 chrX 392321 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.67;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1411,153,0 chrX 392346 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.60;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1434,156,0 chrX 392787 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-1.649;QD=19.48;ReadPosRankSum=1.690;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1650,186,0 chrX 393066 . T C 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=96;Dels=0.00;FS=2.794;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.337;QD=19.68;ReadPosRankSum=2.291;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:2,91:96:99:1922,216,0 chrX 393423 . T C 744 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=13.78;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:54:90:777,90,0 chrX 393501 . C T 550 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.86;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:66:583,66,0 chrX 393564 . G C 660 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.35;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:75:693,75,0 chrX 395232 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.59;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2010,216,0 chrX 395307 . T C 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=72;Dels=0.00;FS=5.635;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.986;QD=20.76;ReadPosRankSum=2.901;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:99:1528,168,0 chrX 395395 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.84;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1638,177,0 chrX 395409 . C T 1464 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6890;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=18.77;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1497,159,0 chrX 395805 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.11;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1205,129,0 chrX 395894 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.76;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1456,159,0 chrX 396269 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.2284;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.18;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2152,231,0 chrX 396480 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.09;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1996,210,0 chrX 396515 . A C 1717 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.73;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1750,195,0 chrX 396551 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.53;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1949,210,0 chrX 396640 . A G 2124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.813;QD=21.67;ReadPosRankSum=1.661;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2157,237,0 chrX 396723 . A G 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.154;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.3594;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.182;QD=16.67;ReadPosRankSum=1.662;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1233,115,0 chrX 396808 . A G 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7679;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.472;QD=14.38;ReadPosRankSum=1.669;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:90:824,90,0 chrX 396831 . T G 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.663;QD=16.98;ReadPosRankSum=1.663;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:882,99,0 chrX 397072 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.40;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1359,153,0 chrX 397093 . T C 1102 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.07;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1135,126,0 chrX 397176 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6220;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.094;QD=22.07;ReadPosRankSum=1.641;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1710,195,0 chrX 397295 . T C 2358 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.04;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2391,267,0 chrX 397474 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.26;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1516,171,0 chrX 397497 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.01;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1777,189,0 chrX 397648 . A G 2313 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.94;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2346,261,0 chrX 398093 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1537,165,0 chrX 398145 . A T 1093 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.02;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1126,126,0 chrX 398191 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.24;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1072,120,0 chrX 398357 . G T 1618 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.11;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1651,174,0 chrX 398569 . T A 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.408;QD=18.86;ReadPosRankSum=1.681;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1372,156,0 chrX 398594 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.98;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1527,171,0 chrX 398695 . A G 847 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:880,96,0 chrX 398892 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.16;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1767,198,0 chrX 398997 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.191;QD=19.05;ReadPosRankSum=1.407;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1252,138,0 chrX 399363 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.02;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1294,141,0 chrX 399390 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.15;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1796,192,0 chrX 399489 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.83;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1824,195,0 chrX 399624 . C T 2942 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.3196;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.73;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2975,315,0 chrX 399879 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.58;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2383,258,0 chrX 399979 . A C 2045 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=19.29;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2078,237,0 chrX 400179 . T A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DP=141;Dels=0.00;FS=6.346;HaplotypeScore=14.2167;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-4.987;QD=0.22;ReadPosRankSum=-0.279;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:104,37:141:61:61,0,1665 chrX 400262 . G A 564.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.739;DP=160;Dels=0.00;FS=1.327;HaplotypeScore=93.9263;MLEAC=1;MLEAF=0.500;MQ=31.54;MQ0=0;MQRankSum=-0.136;QD=3.53;ReadPosRankSum=2.107;SB=-7.200e+02 GT:AD:DP:GQ:PL 0/1:70,90:160:99:594,0,525 chrX 400265 . G A 348.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=7.317;HaplotypeScore=91.1323;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=0;MQRankSum=0.500;QD=2.06;ReadPosRankSum=-3.625;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:127,42:169:99:378,0,864 chrX 400267 . A G 168.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;DP=167;Dels=0.00;FS=6.388;HaplotypeScore=113.8686;MLEAC=1;MLEAF=0.500;MQ=33.16;MQ0=0;MQRankSum=-2.132;QD=1.01;ReadPosRankSum=4.345;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:102,64:167:99:198,0,1069 chrX 400272 . A T 148.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=157;Dels=0.00;FS=4.249;HaplotypeScore=143.8335;MLEAC=1;MLEAF=0.500;MQ=33.41;MQ0=0;MQRankSum=-2.598;QD=0.94;ReadPosRankSum=5.234;SB=-3.040e+02 GT:AD:DP:GQ:PL 0/1:95,62:157:99:178,0,875 chrX 400276 . G A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DP=142;Dels=0.00;FS=5.213;HaplotypeScore=114.3894;MLEAC=1;MLEAF=0.500;MQ=34.07;MQ0=0;MQRankSum=3.969;QD=0.27;ReadPosRankSum=-4.213;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:119,22:142:69:69,0,888 chrX 400278 . A C 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.128;DP=144;Dels=0.00;FS=7.176;HaplotypeScore=111.8714;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=3.979;QD=0.17;ReadPosRankSum=-4.749;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:123,21:144:55:55,0,947 chrX 400280 . A G 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=145;Dels=0.00;FS=5.282;HaplotypeScore=113.5432;MLEAC=1;MLEAF=0.500;MQ=35.07;MQ0=0;MQRankSum=3.947;QD=0.31;ReadPosRankSum=-4.932;SB=-6.301e+01 GT:AD:DP:GQ:PL 0/1:123,22:145:75:75,0,922 chrX 400285 . A G 461.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;DP=144;Dels=0.00;FS=4.697;HaplotypeScore=70.3380;MLEAC=1;MLEAF=0.500;MQ=36.06;MQ0=0;MQRankSum=-3.560;QD=3.20;ReadPosRankSum=4.696;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:76,68:144:99:491,0,682 chrX 400289 . A G 450.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.675;DP=138;Dels=0.00;FS=4.812;HaplotypeScore=24.5321;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=0;MQRankSum=-6.332;QD=3.26;ReadPosRankSum=4.124;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:72,66:138:99:480,0,685 chrX 400290 . A T 469.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;DP=139;Dels=0.00;FS=3.577;HaplotypeScore=23.9481;MLEAC=1;MLEAF=0.500;MQ=36.83;MQ0=0;MQRankSum=-4.663;QD=3.37;ReadPosRankSum=4.215;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:75,64:139:99:499,0,637 chrX 400303 . A G 329.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.892;DP=132;Dels=0.00;FS=2.748;HaplotypeScore=10.3698;MLEAC=1;MLEAF=0.500;MQ=37.99;MQ0=0;MQRankSum=-1.751;QD=2.49;ReadPosRankSum=-0.528;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:84,48:132:99:359,0,805 chrX 400307 . G A 891.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.986;DP=135;Dels=0.00;FS=2.733;HaplotypeScore=7.0850;MLEAC=1;MLEAF=0.500;MQ=38.08;MQ0=0;MQRankSum=-0.304;QD=6.60;ReadPosRankSum=1.733;SB=-5.230e+02 GT:AD:DP:GQ:PL 0/1:48,87:135:99:921,0,350 chrX 400308 . A T 326.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;DP=138;Dels=0.00;FS=5.384;HaplotypeScore=6.2964;MLEAC=1;MLEAF=0.500;MQ=38.17;MQ0=0;MQRankSum=-2.490;QD=2.36;ReadPosRankSum=-1.440;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:91,45:138:99:356,0,957 chrX 400335 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.48;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1622,174,0 chrX 400367 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8442;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.37;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1970,207,0 chrX 400388 . C G 1723 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.23;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1756,195,0 chrX 400497 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.30;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1828,207,0 chrX 400808 . T C 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.577;QD=17.97;ReadPosRankSum=1.653;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1614,180,0 chrX 401166 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.80;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2072,225,0 chrX 401242 . A G 2687 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.02;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2720,303,0 chrX 401436 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.42;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1617,183,0 chrX 401648 . A G 1376 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1961;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.59;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1409,159,0 chrX 402145 . A T 1214 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.39;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1247,135,0 chrX 402396 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.62;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1611,174,0 chrX 402529 . T G 1047 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.70;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1080,120,0 chrX 402683 . T A 3158 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3191,354,0 chrX 402983 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4336;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.98;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2509,288,0 chrX 404816 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.678;QD=22.13;ReadPosRankSum=1.682;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1560,171,0 chrX 405178 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=16.92;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1116,120,0 chrX 405244 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.09;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:911,102,0 chrX 405306 . G A 843 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.16;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:876,93,0 chrX 405572 . G C 799 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=33.5139;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.02;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:832,93,0 chrX 405884 . C T 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.170;QD=22.91;ReadPosRankSum=0.281;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1774,192,0 chrX 406334 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.58;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2178,234,0 chrX 407535 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.1216;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.21;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2410,258,0 chrX 407617 . C T 2728 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3550;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=22.36;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2761,297,0 chrX 407755 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.47;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2619,282,0 chrX 408145 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.59;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1502,174,0 chrX 408211 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.99;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1481,162,0 chrX 408967 . A G 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.544;QD=23.48;ReadPosRankSum=1.683;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1700,186,0 chrX 409470 . T A 921 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.60;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:954,105,0 chrX 409479 . G A 897 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=17.94;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:930,99,0 chrX 409727 . G C 1454 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.52;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1487,168,0 chrX 409825 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.23;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1222,138,0 chrX 409839 . T C 1186 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.97;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1219,138,0 chrX 410189 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.73;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1374,147,0 chrX 410366 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.80;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1419,162,0 chrX 410390 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.36;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1540,168,0 chrX 410951 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.73;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1213,132,0 chrX 411303 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.56;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1362,150,0 chrX 411519 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1028;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.08;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1278,147,0 chrX 412419 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1724,186,0 chrX 412734 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.15;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1849,201,0 chrX 412914 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.87;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1695,189,0 chrX 413049 . T G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.858;QD=21.08;ReadPosRankSum=1.700;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2289,252,0 chrX 414104 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1251,135,0 chrX 414830 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.28;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1710,189,0 chrX 415079 . A G 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.680;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.089;QD=20.52;ReadPosRankSum=1.683;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1490,165,0 chrX 415501 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.46;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2426,258,0 chrX 415838 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.07;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2646,285,0 chrX 416446 . A G 2950 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.38;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2983,333,0 chrX 417327 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.32;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1920,204,0 chrX 417877 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4730;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.35;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1885,207,0 chrX 418708 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.10;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1514,168,0 chrX 419759 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.21;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1014,111,0 chrX 419761 . G C 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DP=56;Dels=0.00;FS=4.260;HaplotypeScore=5.3911;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.237;QD=16.95;ReadPosRankSum=1.237;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:982,111,0 chrX 419940 . A T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=4.834;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.544;QD=24.69;ReadPosRankSum=1.089;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1786,192,0 chrX 421930 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.21;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2333,246,0 chrX 422597 . G A 2756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.414;DP=135;Dels=0.00;FS=4.281;HaplotypeScore=6.6172;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.680;QD=20.41;ReadPosRankSum=1.551;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:2789,309,0 chrX 422828 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2386;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.08;SB=-1.674e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3256,369,0 chrX 422897 . T G 1571 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.46;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1604,177,0 chrX 422911 . T G 1312 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=16.82;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1345,150,0 chrX 423420 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.16;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2064,225,0 chrX 423483 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.68;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1894,216,0 chrX 423584 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.52;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2289,243,0 chrX 423783 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.18;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1142,126,0 chrX 423966 . G A 539 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.39;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:60:572,60,0 chrX 424282 . C T 1295 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1328,147,0 chrX 424593 . T C 2733 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.97;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2766,303,0 chrX 424695 . T C 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=5.019;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.219;QD=17.84;ReadPosRankSum=1.668;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1014,111,0 chrX 424721 . G T 977 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.54;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1010,108,0 chrX 424833 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.23;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1732,192,0 chrX 425333 . T C 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=6.491;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.301;QD=19.64;ReadPosRankSum=2.307;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1722,192,0 chrX 425519 . G A 2296 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.66;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2329,252,0 chrX 427604 . A T 1083 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.24;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1116,123,0 chrX 427737 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.61;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1706,192,0 chrX 428015 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.64;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1288,141,0 chrX 428088 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2028,216,0 chrX 428552 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.243;QD=20.71;ReadPosRankSum=1.691;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1793,204,0 chrX 428882 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.89;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1631,183,0 chrX 428963 . A G 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.247;QD=19.86;ReadPosRankSum=1.666;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2118,237,0 chrX 429437 . A C 2162 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2195,246,0 chrX 431531 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.16;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1747,195,0 chrX 431547 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=88;Dels=0.00;FS=7.260;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.572;QD=17.44;ReadPosRankSum=2.337;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1568,177,0 chrX 431554 . C G 1416 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.6605;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.92;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1449,159,0 chrX 431895 . T A 1985 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.56;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2018,213,0 chrX 432578 . A T 1706 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.32;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1739,186,0 chrX 433968 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.03;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1553,168,0 chrX 434034 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.79;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1280,135,0 chrX 434048 . A T 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=7.132;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-2.019;QD=18.71;ReadPosRankSum=2.372;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1212,132,0 chrX 434839 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.51;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2125,231,0 chrX 435638 . T A 2461 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6099;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.01;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2494,270,0 chrX 436111 . G A 458 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.32;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:491,51,0 chrX 436332 . T A 323 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=15.38;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:39:356,39,0 chrX 436344 . G T 253 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.81;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:286,30,0 chrX 436479 . G A 221.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.09;SB=-1.946e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:254,27,0 chrX 436602 . T C 471 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:57:504,57,0 chrX 437758 . C G 1210 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.0761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.79;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1243,144,0 chrX 438505 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9772;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.18;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,186,0 chrX 438766 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=23.07;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2040,216,0 chrX 438853 . G T 2070 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.26;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2103,228,0 chrX 438922 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.08;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1622,177,0 chrX 439178 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.00;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1969,213,0 chrX 439624 . C T 2562 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.87;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2595,279,0 chrX 439651 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.73;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2251,240,0 chrX 440601 . G T 1804 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.73;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1837,204,0 chrX 440847 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.204;QD=21.98;ReadPosRankSum=1.674;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1352,150,0 chrX 441507 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1046,117,0 chrX 441617 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.95;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1954,207,0 chrX 441699 . A T 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=62;Dels=0.00;FS=3.072;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.466;QD=20.90;ReadPosRankSum=2.288;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1329,141,0 chrX 442545 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1218,129,0 chrX 443196 . T C 2322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;DP=105;Dels=0.00;FS=3.584;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.666;QD=22.11;ReadPosRankSum=1.633;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2355,243,0 chrX 443302 . T A 2056 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.36;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2089,228,0 chrX 443517 . A G 2353 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.5023;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.01;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2386,258,0 chrX 443738 . A C 2589 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.32;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,131:134:99:2622,288,0 chrX 443746 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.05;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2601,276,0 chrX 444274 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.80;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1821,201,0 chrX 444290 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.23;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1625,171,0 chrX 444412 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.27;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2371,258,0 chrX 444535 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.29;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2001,228,0 chrX 444896 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3676;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.70;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1730,195,0 chrX 444969 . T G 1661 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1694,189,0 chrX 445175 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.82;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:993,108,0 chrX 445306 . T C 637 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=10.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:78:670,78,0 chrX 445395 . T G 1249 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.0647;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1282,141,0 chrX 445483 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.26;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2475,261,0 chrX 445655 . A T 1366 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.77;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1399,156,0 chrX 445696 . T A 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.41;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1178,132,0 chrX 445741 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:97:99:1925,213,0 chrX 445825 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.37;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2314,252,0 chrX 445900 . C A 2030 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.71;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2063,222,0 chrX 446085 . G C 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1754,192,0 chrX 446453 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.41;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2046,225,0 chrX 446576 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1635,174,0 chrX 446825 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1541,162,0 chrX 447433 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1585,174,0 chrX 447484 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.58;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1478,162,0 chrX 447638 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.44;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1548,168,0 chrX 448328 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1496,162,0 chrX 448424 . C T 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=6.021;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.444;QD=22.16;ReadPosRankSum=-1.444;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1429,137,0 chrX 448448 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.357;QD=23.79;ReadPosRankSum=1.681;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1651,177,0 chrX 448519 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.90;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1081,120,0 chrX 448867 . T C 430 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=23;Dels=0.00;FS=13.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-1.261;QD=18.70;ReadPosRankSum=1.576;SB=-6.550e-03 GT:AD:DP:GQ:PL 1/1:1,21:23:54:463,54,0 chrX 448869 . T C 409 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.164;QD=17.04;ReadPosRankSum=2.237;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:3,21:24:51:442,51,0 chrX 448922 . T C 805 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=19.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:90:838,90,0 chrX 448935 . A G 785 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=17.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:90:818,90,0 chrX 448936 . T C 796 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=-0.566;QD=17.30;ReadPosRankSum=2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,44:46:93:829,93,0 chrX 449016 . G A 444 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.980;QD=18.50;ReadPosRankSum=1.432;SB=-6.580e-03 GT:AD:DP:GQ:PL 1/1:1,22:24:51:477,51,0 chrX 449033 . G A 580 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=6.7951;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.00;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:66:613,66,0 chrX 449256 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.32;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1499,165,0 chrX 449273 . G C 1444 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.05;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1477,162,0 chrX 449591 . A G 2227 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.62;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2260,252,0 chrX 450386 . C A 2863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6203;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.256;QD=21.53;ReadPosRankSum=0.304;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2896,312,0 chrX 450524 . G A 2536 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.97;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2569,273,0 chrX 450709 . T C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=109;Dels=0.00;FS=14.317;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.200;QD=19.89;ReadPosRankSum=2.934;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:3,103:109:99:2201,249,0 chrX 451148 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1767;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1830,201,0 chrX 451382 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.66;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1932,207,0 chrX 452021 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1514,165,0 chrX 452144 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.01;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1736,189,0 chrX 452579 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1218;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.81;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2489,276,0 chrX 452919 . T A 2147 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.4025;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.47;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2180,240,0 chrX 453314 . T G 1741 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.56;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1774,201,0 chrX 453323 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.91;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1656,189,0 chrX 453420 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0329;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.84;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1799,201,0 chrX 454761 . A G 3901.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=172;Dels=0.00;FS=3.579;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=22.68;ReadPosRankSum=1.712;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:1,170:172:99:3901,432,0 chrX 455260 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.46;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1977,213,0 chrX 455390 . A T 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=97;Dels=0.00;FS=3.199;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.400;QD=20.18;ReadPosRankSum=1.658;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1990,216,0 chrX 455495 . T G 1772 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.88;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1805,198,0 chrX 455701 . G A 3003 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.28;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:3036,327,0 chrX 455724 . C A 2283 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.74;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2316,264,0 chrX 456071 . A T 696 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.150;QD=14.20;ReadPosRankSum=2.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,46:49:81:729,81,0 chrX 456238 . C T 1265 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.4273;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1298,141,0 chrX 456685 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.80;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1706,186,0 chrX 456690 . A T 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4318;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.221;QD=18.37;ReadPosRankSum=1.695;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1760,186,0 chrX 456781 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.0731;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.362;QD=20.81;ReadPosRankSum=1.656;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1968,225,0 chrX 456857 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.25;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1903,213,0 chrX 456916 . A G 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.091;QD=20.23;ReadPosRankSum=1.623;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1955,216,0 chrX 457678 . A G 566 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:66:599,66,0 chrX 457744 . C T 400 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:433,45,0 chrX 458534 . A T 1669 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.13;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1702,180,0 chrX 458598 . G C 1595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.99;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1628,183,0 chrX 458980 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.71;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2690,294,0 chrX 460401 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.13;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1870,201,0 chrX 460723 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.16;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1662,186,0 chrX 460997 . A G 2435 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.87;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2468,273,0 chrX 461507 . G C 2238 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.31;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2271,249,0 chrX 461760 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.85;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2272,249,0 chrX 462490 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2144,237,0 chrX 462583 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=3.263;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.065;QD=17.60;ReadPosRankSum=1.667;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1934,207,0 chrX 462605 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.096;QD=15.12;ReadPosRankSum=1.591;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,97:103:99:1590,183,0 chrX 462634 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.67;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1687,186,0 chrX 462689 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.1813;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.43;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2034,234,0 chrX 462733 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=15.86;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:1936,204,0 chrX 462777 . C G 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.67;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1707,186,0 chrX 463068 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.57;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1185,132,0 chrX 463086 . T C 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=1.675;QD=17.72;ReadPosRankSum=1.675;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1096,126,0 chrX 463170 . T C 871 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=11.2802;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.80;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:904,102,0 chrX 463222 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.05;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2005,216,0 chrX 463257 . A G 1847 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.09;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1880,213,0 chrX 463516 . C G 1971 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.66;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2004,219,0 chrX 463561 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.58;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2481,276,0 chrX 463573 . T C 2533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=129;Dels=0.00;FS=3.023;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=0.320;QD=19.64;ReadPosRankSum=2.411;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2566,285,0 chrX 463641 . A G 2224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.350;DP=123;Dels=0.00;FS=24.292;HaplotypeScore=14.3347;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-2.997;QD=18.08;ReadPosRankSum=4.427;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:7,116:123:99:2257,249,0 chrX 463800 . G T 2104 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.13;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2137,234,0 chrX 464252 . A G 943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.540;QD=17.15;ReadPosRankSum=1.668;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,53:55:99:976,111,0 chrX 464359 . A T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=24;Dels=0.04;FS=45.270;HaplotypeScore=9.7019;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.037;QD=0.50;ReadPosRankSum=0.857;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:18,5:23:6:43,6,0 chrX 465021 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.80;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2222,240,0 chrX 465282 . G A 2826 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.61;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2859,306,0 chrX 465366 . T C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=113;Dels=0.00;FS=7.054;HaplotypeScore=13.7935;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.890;QD=20.19;ReadPosRankSum=2.406;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,110:113:99:2314,252,0 chrX 465678 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.828;QD=19.00;ReadPosRankSum=1.672;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2218,249,0 chrX 465795 . G A 2755 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.87;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2788,297,0 chrX 466167 . A G 1210 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.04;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1243,138,0 chrX 466365 . T A 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.329;QD=22.65;ReadPosRankSum=1.692;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1981,213,0 chrX 466454 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.62;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2027,219,0 chrX 467010 . C G 547 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.67;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:580,66,0 chrX 467107 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=15.53;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2021,213,0 chrX 467162 . A G 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.125;QD=13.43;ReadPosRankSum=2.394;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1242,138,0 chrX 467199 . A G 2535 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.24;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2568,294,0 chrX 467886 . T C 2648 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3285;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.35;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2681,297,0 chrX 467997 . A G 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.179;QD=19.68;ReadPosRankSum=1.695;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1903,210,0 chrX 468087 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.75;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1988,216,0 chrX 468122 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.58;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1673,186,0 chrX 468847 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.79;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1776,192,0 chrX 468890 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=16.57;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1690,192,0 chrX 468905 . G A 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.300;QD=15.14;ReadPosRankSum=1.499;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1608,177,0 chrX 468906 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=14.33;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1538,174,0 chrX 469142 . C G 1193 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=14.91;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1226,138,0 chrX 469453 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.13;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2069,222,0 chrX 469520 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.00;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1331,147,0 chrX 469702 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=24.9175;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=2.902;QD=19.41;ReadPosRankSum=1.018;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:6,100:111:99:2188,252,0 chrX 469758 . A T 2867 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.12;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2900,312,0 chrX 470299 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.36;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1598,168,0 chrX 471486 . T A 1462 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.76;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1495,162,0 chrX 471532 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1109,120,0 chrX 471770 . T C 591 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:624,72,0 chrX 472011 . A G 784 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.40;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:90:817,90,0 chrX 472296 . C T 952 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=25.73;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:985,105,0 chrX 484353 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.7021;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.443;QD=18.30;ReadPosRankSum=-0.247;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1570,150,0 chrX 484372 . C T 1503 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.11;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1536,162,0 chrX 484467 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2194,243,0 chrX 484754 . T A 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=6.251;HaplotypeScore=7.6307;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.398;QD=21.94;ReadPosRankSum=2.398;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2139,231,0 chrX 485198 . G T 1774 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.17;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1807,192,0 chrX 485226 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.27;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2015,216,0 chrX 486442 . A T 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.412;QD=19.34;ReadPosRankSum=1.512;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1271,141,0 chrX 489978 . C G 1745 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1778,195,0 chrX 490198 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.42;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1891,210,0 chrX 490357 . A T 1848 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.00;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1881,210,0 chrX 491992 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.147;QD=21.66;ReadPosRankSum=1.674;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1311,147,0 chrX 494352 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1417,162,0 chrX 494983 . T C 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=7.1887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.253;QD=17.99;ReadPosRankSum=1.693;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1652,186,0 chrX 494994 . C G 1428 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.55;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1461,165,0 chrX 495112 . T A 1888 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9499;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.21;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1921,210,0 chrX 495458 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2175,237,0 chrX 497410 . A G 1965 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1998,225,0 chrX 497589 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1225,138,0 chrX 497696 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.95;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2305,258,0 chrX 498149 . A G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.256;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.390;QD=20.26;ReadPosRankSum=1.694;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1877,216,0 chrX 498452 . G T 1776 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.14;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1809,195,0 chrX 498551 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.11;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1327,141,0 chrX 498645 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.60;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1955,210,0 chrX 498791 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4630;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.53;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1971,216,0 chrX 499118 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.05;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1570,165,0 chrX 499382 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2151,234,0 chrX 499829 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.51;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1199,138,0 chrX 500192 . A G 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.224;QD=20.23;ReadPosRankSum=1.676;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1287,144,0 chrX 501283 . C T 811 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:844,90,0 chrX 501448 . A C 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.056;QD=21.05;ReadPosRankSum=1.648;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:896,102,0 chrX 501532 . A G 1052 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.85;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1085,126,0 chrX 501976 . A C 883 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:916,102,0 chrX 502163 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1846,201,0 chrX 502527 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1180,129,0 chrX 502687 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.01;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1528,165,0 chrX 502696 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.41;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1513,168,0 chrX 502798 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0347;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.00;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1925,210,0 chrX 502945 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2172,237,0 chrX 503193 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.147;QD=15.31;ReadPosRankSum=1.674;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,58:62:99:982,108,0 chrX 503342 . C G 1714 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.31;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1747,195,0 chrX 503433 . T G 1927 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.95;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1960,219,0 chrX 503940 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.90;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1784,198,0 chrX 504158 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6033;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.06;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1604,180,0 chrX 504241 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.87;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2157,231,0 chrX 506073 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.69;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1213,129,0 chrX 506424 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.70;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2138,228,0 chrX 506903 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=9.5140;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.563;QD=19.88;ReadPosRankSum=0.380;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1663,186,0 chrX 507024 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.61;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1579,180,0 chrX 507331 . A T 1652 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.65;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1685,180,0 chrX 508075 . G A 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=81;Dels=0.00;FS=3.287;HaplotypeScore=5.1056;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.535;QD=20.78;ReadPosRankSum=-0.150;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1716,162,0 chrX 508366 . C G 2330 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.99;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2363,264,0 chrX 508514 . T A 1459 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.79;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1492,159,0 chrX 508525 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=3.7049;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.12;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1468,156,0 chrX 508529 . A C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.103;DP=90;Dels=0.00;FS=15.393;HaplotypeScore=4.4998;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.303;QD=14.42;ReadPosRankSum=3.358;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1331,150,0 chrX 508627 . T C 1618 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1651,186,0 chrX 508682 . T C 2017 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.21;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2050,228,0 chrX 508859 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.85;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1672,180,0 chrX 509110 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1796,204,0 chrX 509746 . C T 2343 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.75;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2376,249,0 chrX 509929 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1668,186,0 chrX 510183 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.94;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1593,171,0 chrX 510201 . A T 1464 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.53;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1497,162,0 chrX 510323 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1351,147,0 chrX 510548 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.37;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1973,213,0 chrX 510695 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.29;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1306,144,0 chrX 510914 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1590,177,0 chrX 510989 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1234,135,0 chrX 511117 . A G 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.938;QD=20.12;ReadPosRankSum=1.660;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1019,111,0 chrX 511949 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1586,171,0 chrX 512096 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.08;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1755,186,0 chrX 512140 . T C 1603 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.90;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1636,183,0 chrX 512399 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1995,213,0 chrX 512491 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.11;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1997,210,0 chrX 513191 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1616,177,0 chrX 513265 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1281,141,0 chrX 514663 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2045,219,0 chrX 514825 . G A 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.252;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.685;QD=21.72;ReadPosRankSum=-0.140;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1640,180,0 chrX 515138 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.29;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1904,210,0 chrX 515338 . T C 2394 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.62;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2427,270,0 chrX 515351 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.88;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2399,267,0 chrX 515450 . C T 3393.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.40;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3393,363,0 chrX 516190 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.76;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1215,138,0 chrX 516436 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.93;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1878,198,0 chrX 516694 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.41;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1602,174,0 chrX 516695 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.54;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1611,174,0 chrX 516707 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.86;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1629,174,0 chrX 516831 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=16.27;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1237,132,0 chrX 516847 . T C 1202 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=78;Dels=0.00;FS=6.803;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.990;QD=15.41;ReadPosRankSum=2.385;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:2,74:78:99:1235,138,0 chrX 517094 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.90;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1337,147,0 chrX 517244 . G C 2206 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.51;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2239,255,0 chrX 517494 . T G 1423 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.04;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1456,165,0 chrX 517501 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.16;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1514,159,0 chrX 517771 . A C 1272 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.17;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1305,147,0 chrX 517777 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.03;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1313,144,0 chrX 518283 . A T 1601 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7431;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.68;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1634,174,0 chrX 518451 . C T 1249 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=15.05;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1282,144,0 chrX 518465 . A G 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-1.586;QD=16.82;ReadPosRankSum=1.683;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1227,135,0 chrX 518479 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.20;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1021,108,0 chrX 518528 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.62;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1302,141,0 chrX 518647 . G T 1510 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.54;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1543,168,0 chrX 518721 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.14;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1162,129,0 chrX 519608 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.69;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2047,234,0 chrX 519770 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.07;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1228,132,0 chrX 520324 . A G 2146 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.68;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2179,243,0 chrX 520820 . T C 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=100;Dels=0.00;FS=9.202;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.836;QD=20.48;ReadPosRankSum=3.245;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:4,96:100:99:2081,225,0 chrX 520853 . C T 2244 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.86;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2277,255,0 chrX 521282 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.42;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1932,213,0 chrX 521645 . T G 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.273;QD=21.95;ReadPosRankSum=2.279;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,113:117:99:2601,291,0 chrX 522284 . T C 3194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=147;Dels=0.00;FS=3.285;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.284;QD=21.73;ReadPosRankSum=1.709;SB=-1.677e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3227,360,0 chrX 522451 . C T 3044 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6832;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.43;SB=-1.884e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3077,330,0 chrX 522481 . C G 2907 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.51;SB=-1.814e+03 GT:AD:DP:GQ:PL 1/1:0,144:149:99:2940,327,0 chrX 522533 . A G 3125 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6078;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.26;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3158,360,0 chrX 522608 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.6516;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.35;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1664,189,0 chrX 522722 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.06;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2218,243,0 chrX 522788 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.163;QD=14.51;ReadPosRankSum=1.699;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1571,180,0 chrX 523867 . T G 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.398;QD=17.19;ReadPosRankSum=1.690;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1460,162,0 chrX 523946 . C T 497 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=8.02;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:57:530,57,0 chrX 523974 . A C 512 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=8.98;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:60:545,60,0 chrX 523980 . T C 540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.924;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-0.672;QD=9.47;ReadPosRankSum=2.364;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:63:573,63,0 chrX 524113 . T G 1278 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.82;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1311,144,0 chrX 524270 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=22.37;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1711,186,0 chrX 524292 . C G 1402 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=21.91;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1435,156,0 chrX 524341 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=16.82;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:874,96,0 chrX 524351 . C T 782 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=16.64;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:815,90,0 chrX 524370 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=16.69;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:901,108,0 chrX 524404 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.62;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1150,126,0 chrX 524412 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=15.45;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1053,120,0 chrX 524477 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.72;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1493,159,0 chrX 524507 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.65;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1208,129,0 chrX 524547 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.98;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:956,105,0 chrX 524618 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.76;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:78:708,78,0 chrX 524785 . A G 826 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:96:859,96,0 chrX 525745 . C A 127.13 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=18.0001;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=5.30;SB=-1.541e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:18:160,18,0 chrX 526012 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.49;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1043,114,0 chrX 526305 . A G 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=12.416;HaplotypeScore=5.1168;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.902;QD=21.62;ReadPosRankSum=2.798;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:3,151:156:99:3372,390,0 chrX 526730 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.51;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1496,162,0 chrX 526954 . A T 1114 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1147,123,0 chrX 527043 . T C 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=3.027;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.931;QD=16.75;ReadPosRankSum=2.336;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1122,123,0 chrX 527220 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.24;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2093,225,0 chrX 527370 . A G 1566 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1599,183,0 chrX 527586 . T C 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=3.832;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.478;QD=16.07;ReadPosRankSum=1.673;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:981,111,0 chrX 528102 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.93;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2007,219,0 chrX 528252 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.96;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1797,192,0 chrX 528639 . A T 3069 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.79;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3102,327,0 chrX 528849 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.16;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2692,285,0 chrX 528913 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.13;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2611,291,0 chrX 529045 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.03;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1505,165,0 chrX 529077 . A G 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=65;Dels=0.00;FS=7.926;HaplotypeScore=6.4427;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.289;QD=21.32;ReadPosRankSum=2.373;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:99:1419,156,0 chrX 529180 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.87;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1640,174,0 chrX 529374 . A G 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.119;QD=18.37;ReadPosRankSum=1.660;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1797,198,0 chrX 529383 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=89;Dels=0.00;FS=2.837;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=-0.490;QD=16.01;ReadPosRankSum=2.394;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1458,162,0 chrX 529442 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.96;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1380,153,0 chrX 529470 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=0.645;QD=18.44;ReadPosRankSum=1.692;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1619,180,0 chrX 529486 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=16.63;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1214,132,0 chrX 529549 . T C 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;MQRankSum=-1.072;QD=12.36;ReadPosRankSum=1.622;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:93:824,93,0 chrX 529553 . C T 834 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=13.03;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:867,93,0 chrX 529582 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3998;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=16.82;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1429,156,0 chrX 529640 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.39;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1645,180,0 chrX 529795 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=21.96;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1636,177,0 chrX 530079 . T C 907 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.12;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:940,105,0 chrX 530523 . G A 1847 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0170;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.25;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1880,201,0 chrX 530814 . G A 2230 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.24;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2263,240,0 chrX 531033 . A G 2232 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.06;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2265,258,0 chrX 531048 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.16;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2326,246,0 chrX 531521 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.01;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2698,288,0 chrX 531568 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=24.95;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2129,231,0 chrX 531599 . T G 2074 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=24.12;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2107,231,0 chrX 531713 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.53;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2396,267,0 chrX 531747 . T G 2012 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=16.49;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2045,231,0 chrX 531751 . T C 1993 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=16.47;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2026,222,0 chrX 531791 . A G 914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=-1.732;QD=9.83;ReadPosRankSum=1.695;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:947,111,0 chrX 531794 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=10.57;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:995,114,0 chrX 531807 . G A 964 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.00;MQ0=0;QD=12.20;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:997,108,0 chrX 531808 . A T 990 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.37;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1023,108,0 chrX 531814 . T A 1045 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=5.574;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=-1.690;QD=12.29;ReadPosRankSum=1.690;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1078,117,0 chrX 531946 . C T 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;MQRankSum=1.032;QD=16.97;ReadPosRankSum=1.452;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1764,198,0 chrX 531953 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=16.70;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1803,195,0 chrX 531967 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;QD=17.75;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1755,189,0 chrX 531989 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=16.87;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1838,195,0 chrX 532000 . C A 1514 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=14.56;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1547,168,0 chrX 532003 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=15.21;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1645,174,0 chrX 532916 . T A 2543 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.67;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2576,285,0 chrX 533261 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.80;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2322,264,0 chrX 533424 . A C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=13.4856;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.431;QD=19.36;ReadPosRankSum=2.379;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2743,306,0 chrX 533833 . T G 1777 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.67;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1810,201,0 chrX 534536 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.69;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1881,201,0 chrX 534756 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.94;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1436,159,0 chrX 535316 . A G 2683 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.33;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2716,312,0 chrX 535430 . T C 1773 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.48;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1806,201,0 chrX 535622 . T C 2334 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.23;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2367,267,0 chrX 535682 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.75;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2028,222,0 chrX 535766 . T C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.018;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.650;QD=20.66;ReadPosRankSum=2.350;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1562,174,0 chrX 535873 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.30;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1460,159,0 chrX 535930 . G C 885 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.83;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:918,102,0 chrX 537808 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=1;QD=19.77;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:962,105,0 chrX 537810 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=1;QD=22.16;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1030,111,0 chrX 537845 . T G 1000 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=1;QD=23.26;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1033,114,0 chrX 538049 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=20.18;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1385,147,0 chrX 538523 . T G 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=9.283;HaplotypeScore=4.7441;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.094;QD=20.23;ReadPosRankSum=2.375;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1368,156,0 chrX 538784 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.89;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1259,141,0 chrX 538877 . G A 1124 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=17.03;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1157,129,0 chrX 538878 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=18.27;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1239,132,0 chrX 538920 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.66;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1302,138,0 chrX 538944 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.69;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1118,123,0 chrX 539053 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.91;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1545,171,0 chrX 539146 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.18;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1198,135,0 chrX 539272 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.11;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2185,246,0 chrX 539275 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.58;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2215,237,0 chrX 539286 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.68;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2099,231,0 chrX 539419 . T C 903 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.81;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:936,105,0 chrX 539524 . T G 351 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=10.32;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:42:384,42,0 chrX 539652 . A G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=2.893;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.218;QD=18.86;ReadPosRankSum=2.354;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:995,111,0 chrX 539780 . C T 475 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.65;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:508,54,0 chrX 540022 . C G 1435 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.15;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1468,162,0 chrX 540057 . T C 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.669;QD=19.33;ReadPosRankSum=1.669;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1135,126,0 chrX 540073 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.11;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1119,123,0 chrX 540077 . T C 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.411;QD=19.35;ReadPosRankSum=2.877;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:99:1136,123,0 chrX 540156 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.71;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1392,147,0 chrX 540433 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.55;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1757,198,0 chrX 540570 . T C 3544.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.72;SB=-1.878e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3544,393,0 chrX 540805 . G T 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.680;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=1.292;QD=22.55;ReadPosRankSum=-0.192;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1476,162,0 chrX 540972 . A T 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-0.648;QD=15.06;ReadPosRankSum=1.702;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1810,201,0 chrX 541095 . T C 610 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.48;MQ0=0;QD=14.19;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:643,72,0 chrX 541613 . A T 1311 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=21.15;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1344,147,0 chrX 542896 . G C 1788 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=20.79;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1821,204,0 chrX 542907 . T G 1869 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.48;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1902,216,0 chrX 543047 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.16;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1446,162,0 chrX 543099 . A G 1224 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=15.49;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1257,135,0 chrX 543103 . T C 1099 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=-1.195;QD=14.85;ReadPosRankSum=1.683;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1132,126,0 chrX 543105 . C T 1039 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=13.85;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1072,117,0 chrX 543140 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=16.17;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1763,186,0 chrX 543194 . C G 2101 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.22;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2134,237,0 chrX 543237 . A G 2350 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5822;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.56;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2383,276,0 chrX 543296 . C A 2750 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.11;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2783,321,0 chrX 543697 . C T 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8923;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.794;QD=18.97;ReadPosRankSum=0.397;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1854,198,0 chrX 543721 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=6.251;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=1.039;QD=18.73;ReadPosRankSum=2.347;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1831,204,0 chrX 543776 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.66;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1746,195,0 chrX 543878 . T G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=89;Dels=0.00;FS=3.485;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.015;QD=22.39;ReadPosRankSum=1.692;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:2026,225,0 chrX 544009 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.210;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.020;QD=20.49;ReadPosRankSum=1.653;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1836,204,0 chrX 544322 . C G 2033 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2066,228,0 chrX 544484 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.30;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1313,144,0 chrX 544493 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.211;QD=17.38;ReadPosRankSum=1.648;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1458,162,0 chrX 544523 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=17.92;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1861,210,0 chrX 545038 . A G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.694;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.824;QD=20.59;ReadPosRankSum=1.665;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2154,237,0 chrX 545086 . A G 2380 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.83;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2413,267,0 chrX 545209 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=7.975;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.045;QD=16.55;ReadPosRankSum=2.360;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,135:138:99:2317,261,0 chrX 545223 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=16.97;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2460,270,0 chrX 545233 . C T 2420 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.79;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2453,267,0 chrX 545249 . A G 2366 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.78;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2399,267,0 chrX 545352 . G T 2504 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.62;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2537,273,0 chrX 545817 . G C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.276;DP=80;Dels=0.00;FS=6.021;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.687;QD=16.24;ReadPosRankSum=1.550;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,75:80:99:1332,150,0 chrX 546078 . T C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.674;QD=21.10;ReadPosRankSum=1.684;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1552,171,0 chrX 546103 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.97;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1549,168,0 chrX 546305 . T C 1963 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.417;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.496;QD=22.06;ReadPosRankSum=-0.157;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1996,197,0 chrX 546410 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.87;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1840,195,0 chrX 546527 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.71;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1470,162,0 chrX 546530 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.905;QD=16.02;ReadPosRankSum=1.693;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1459,165,0 chrX 546746 . T A 1315 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1348,147,0 chrX 547067 . C T 2224 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.46;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2257,243,0 chrX 547200 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.23;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2071,222,0 chrX 547820 . C A 2101 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.34;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2134,228,0 chrX 548463 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1779,195,0 chrX 548666 . A G 1429 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.64;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1462,162,0 chrX 548667 . A T 1548 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.88;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1581,168,0 chrX 548670 . A G 1416 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.66;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1449,165,0 chrX 549349 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.0577;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.79;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1931,210,0 chrX 549427 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=87;Dels=0.00;FS=11.993;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.390;QD=21.57;ReadPosRankSum=2.393;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1910,216,0 chrX 549542 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.86;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1585,180,0 chrX 549825 . T A 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=10.336;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.854;QD=21.05;ReadPosRankSum=2.365;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1254,135,0 chrX 550305 . T C 887 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.87;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:920,102,0 chrX 550314 . G T 860 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.70;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:893,99,0 chrX 550333 . T C 696 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=14.81;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:729,84,0 chrX 550553 . T A 1757 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.40;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1790,189,0 chrX 550587 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.71;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1399,150,0 chrX 550609 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.29;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1278,141,0 chrX 550960 . T C 2235 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=2.997;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-1.356;QD=20.69;ReadPosRankSum=2.381;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2268,255,0 chrX 551032 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.83;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2849,309,0 chrX 551409 . C A 1816 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.53;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1849,198,0 chrX 551577 . C G 1387 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1420,156,0 chrX 551614 . A G 1830 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.87;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1863,207,0 chrX 552134 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.63;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2570,276,0 chrX 552241 . A G 2147 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.36;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2180,243,0 chrX 552529 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.26;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1516,171,0 chrX 552584 . A T 1778 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.20;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1811,195,0 chrX 552593 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1122;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.90;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1677,183,0 chrX 553379 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.60;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1156,129,0 chrX 553521 . T G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.192;QD=23.13;ReadPosRankSum=1.687;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1814,204,0 chrX 553533 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.00;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1781,195,0 chrX 553545 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.32;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1355,150,0 chrX 553604 . T C 620 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=15.50;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:653,72,0 chrX 553611 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=15.08;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:621,69,0 chrX 553617 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=15.00;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:588,63,0 chrX 553641 . T C 415 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=13.39;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:51:448,51,0 chrX 553782 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.57;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1816,195,0 chrX 553828 . T C 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.386;QD=18.13;ReadPosRankSum=1.701;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2027,228,0 chrX 553911 . G T 2518 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=24.45;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2551,276,0 chrX 554029 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.47;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1746,192,0 chrX 554502 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.99;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1550,165,0 chrX 554517 . A T 1462 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.49;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1495,159,0 chrX 554571 . A G 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.476;QD=23.30;ReadPosRankSum=1.694;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2153,240,0 chrX 554739 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.87;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1931,216,0 chrX 554884 . C G 1301 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.42;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1334,150,0 chrX 554895 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=19.81;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1360,153,0 chrX 554957 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.78;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1611,171,0 chrX 554974 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.04;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1891,207,0 chrX 554999 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.09;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2032,225,0 chrX 555015 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9874;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.684;QD=17.55;ReadPosRankSum=1.674;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2122,228,0 chrX 555162 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2755;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.55;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1492,159,0 chrX 555166 . T C 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=11.5515;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.241;QD=17.65;ReadPosRankSum=1.636;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1339,150,0 chrX 555458 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.39;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2442,261,0 chrX 555691 . A G 2885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=133;Dels=0.00;FS=6.809;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.009;QD=21.69;ReadPosRankSum=2.413;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2918,321,0 chrX 555723 . T C 3289.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=141;Dels=0.00;FS=2.614;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.805;QD=23.33;ReadPosRankSum=2.362;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:2,139:141:99:3289,363,0 chrX 556159 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.51;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2199,243,0 chrX 556720 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.98;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2308,255,0 chrX 556864 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.37;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1660,186,0 chrX 557026 . G A 2617 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.8231;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.10;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2650,285,0 chrX 557209 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.81;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2212,240,0 chrX 557221 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.80;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1875,201,0 chrX 557590 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5512;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.72;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1575,171,0 chrX 557648 . C G 1633 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.33;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1666,195,0 chrX 558226 . T C 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.017;QD=21.86;ReadPosRankSum=1.697;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2197,243,0 chrX 558253 . G A 2463 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.68;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2496,273,0 chrX 558314 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.065;DP=96;Dels=0.00;FS=6.633;HaplotypeScore=9.9916;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.244;QD=19.62;ReadPosRankSum=2.398;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1917,216,0 chrX 558558 . A G 1530 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.37;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1563,174,0 chrX 558652 . A G 969 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.15;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1002,117,0 chrX 558676 . T C 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.474;QD=17.16;ReadPosRankSum=1.525;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1183,129,0 chrX 558889 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=3.008;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.578;QD=19.24;ReadPosRankSum=2.371;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1226,135,0 chrX 559033 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.54;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1196,138,0 chrX 559588 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.353;QD=22.15;ReadPosRankSum=1.637;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1672,183,0 chrX 559811 . G C 1390 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=22.06;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1423,156,0 chrX 559813 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.97;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1417,153,0 chrX 559883 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.86;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1523,168,0 chrX 560037 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.01;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1882,207,0 chrX 560156 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.29;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2034,219,0 chrX 560201 . A C 1895 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.54;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1928,219,0 chrX 560210 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6731;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.54;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1794,201,0 chrX 560264 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9191;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=16.53;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1471,159,0 chrX 560285 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=15.66;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1411,153,0 chrX 560417 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.64;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2076,228,0 chrX 560603 . T G 1288 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.83;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1321,147,0 chrX 561055 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1854,207,0 chrX 561590 . A G 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=3.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.834;QD=23.46;ReadPosRankSum=2.327;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1910,204,0 chrX 562463 . T C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=125;Dels=0.00;FS=2.856;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.716;QD=21.82;ReadPosRankSum=2.350;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2760,309,0 chrX 562628 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.15;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1175,129,0 chrX 562685 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.42;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1334,147,0 chrX 562775 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.77;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2378,255,0 chrX 562979 . T G 1603 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.57;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1636,180,0 chrX 563138 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.56;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1385,156,0 chrX 563819 . G T 1362 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.95;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1395,150,0 chrX 564333 . T G 1821 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.76;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1854,201,0 chrX 564414 . T C 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.685;QD=22.37;ReadPosRankSum=1.685;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1666,183,0 chrX 564566 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.26;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1731,189,0 chrX 564818 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1893,207,0 chrX 565262 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.77;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1426,159,0 chrX 565364 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6930;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=15.09;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1421,159,0 chrX 565373 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=14.82;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1411,159,0 chrX 565457 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2547,282,0 chrX 565667 . A C 1606 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.62;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1639,183,0 chrX 565724 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.84;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2138,225,0 chrX 565886 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.74;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2125,234,0 chrX 565916 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.99;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2216,243,0 chrX 566045 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.73;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1473,165,0 chrX 566093 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.63;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1620,174,0 chrX 566114 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.43;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1879,201,0 chrX 566600 . G C 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1246,141,0 chrX 566656 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.81;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1344,150,0 chrX 567062 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.44;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1377,147,0 chrX 567157 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.005;DP=81;Dels=0.00;FS=4.314;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.647;QD=22.10;ReadPosRankSum=1.689;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1823,204,0 chrX 567298 . C T 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.843;QD=21.47;ReadPosRankSum=0.843;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1622,177,0 chrX 567462 . A G 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.038;QD=20.66;ReadPosRankSum=1.657;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1934,216,0 chrX 567525 . A G 2802 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.24;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2835,315,0 chrX 568363 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.23;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2034,219,0 chrX 568783 . C T 858 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=13.62;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:891,99,0 chrX 568787 . T C 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=67;Dels=0.00;FS=5.411;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-0.834;QD=13.18;ReadPosRankSum=2.895;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:916,105,0 chrX 568805 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=14.43;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1000,108,0 chrX 570648 . C G 917 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=9.5837;MLEAC=2;MLEAF=1.00;MQ=60.93;MQ0=0;QD=16.67;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:950,105,0 chrX 570822 . A G 818 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.45;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:851,99,0 chrX 571765 . A T 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=114;Dels=0.00;FS=3.032;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.987;QD=19.94;ReadPosRankSum=2.405;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2306,252,0 chrX 571909 . G A 2420 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2453,264,0 chrX 572314 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2655,282,0 chrX 572450 . G C 1405 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0621;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=22.30;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1438,162,0 chrX 572936 . C T 2464 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.03;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2497,270,0 chrX 572997 . T C 2966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=160;Dels=0.00;FS=10.143;HaplotypeScore=17.7171;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.440;QD=18.54;ReadPosRankSum=2.956;SB=-1.863e+03 GT:AD:DP:GQ:PL 1/1:3,157:160:99:2999,333,0 chrX 573199 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.18;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2215,246,0 chrX 573325 . C T 2756 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.8318;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.72;SB=-1.577e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2789,300,0 chrX 573386 . A G 3321.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=153;Dels=0.00;FS=7.610;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.667;QD=21.71;ReadPosRankSum=2.401;SB=-1.659e+03 GT:AD:DP:GQ:PL 1/1:2,151:153:99:3321,360,0 chrX 573441 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.80;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2468,267,0 chrX 574034 . C G 1307 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.15;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1340,150,0 chrX 574073 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.82;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1796,192,0 chrX 574412 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.61;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1697,186,0 chrX 574769 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.074;QD=22.42;ReadPosRankSum=1.688;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1827,207,0 chrX 574799 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1818,201,0 chrX 575549 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.17;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1260,141,0 chrX 575654 . C T 2492 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.05;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2525,276,0 chrX 576182 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.63;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2034,216,0 chrX 576551 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.45;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1167,126,0 chrX 576821 . T C 865 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:99:898,99,0 chrX 576835 . C A 674 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:78:707,78,0 chrX 576915 . T C 530 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.28;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:563,63,0 chrX 576952 . A G 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.466;QD=18.38;ReadPosRankSum=1.666;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,51:52:99:989,111,0 chrX 576987 . T G 697 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:81:730,81,0 chrX 577001 . G A 612 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.49;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:645,69,0 chrX 577019 . A C 510 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.62;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:60:543,60,0 chrX 577035 . T A 230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=14;Dels=0.00;FS=8.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.737;QD=16.43;ReadPosRankSum=1.470;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:30:263,30,0 chrX 577387 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.00;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1734,192,0 chrX 577591 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.68;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1530,162,0 chrX 577732 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.32;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1863,201,0 chrX 578278 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.26;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2039,219,0 chrX 578638 . C A 1708 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.77;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1741,195,0 chrX 579055 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2289;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.06;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1886,201,0 chrX 579663 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.49;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1537,168,0 chrX 579671 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.64;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1408,150,0 chrX 579695 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=16.38;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1098,120,0 chrX 580212 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.57;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1333,147,0 chrX 580312 . T C 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=13.034;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.559;QD=14.03;ReadPosRankSum=2.369;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:903,105,0 chrX 580888 . T A 1540 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.69;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1573,171,0 chrX 580939 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.01;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1582,174,0 chrX 581143 . A T 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=69;Dels=0.00;FS=5.344;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.045;QD=18.10;ReadPosRankSum=2.897;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1282,141,0 chrX 582415 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=47.1811;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.04;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1043,111,0 chrX 582462 . A T 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=45.2481;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.657;QD=15.29;ReadPosRankSum=1.673;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:920,105,0 chrX 582558 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.85;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1825,195,0 chrX 582722 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.07;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1177,123,0 chrX 582845 . G T 1835 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.34;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1868,201,0 chrX 582893 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.86;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1476,159,0 chrX 582986 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7707;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.979;QD=14.74;ReadPosRankSum=1.694;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1404,153,0 chrX 583236 . C T 2296 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.1313;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.43;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2329,249,0 chrX 583304 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1976,216,0 chrX 584125 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.69;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1059,114,0 chrX 584131 . T C 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=4.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.787;QD=18.00;ReadPosRankSum=1.669;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1041,120,0 chrX 584707 . T C 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;DP=100;Dels=0.00;FS=5.135;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=1.223;QD=10.92;ReadPosRankSum=2.999;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1125,129,0 chrX 584710 . C T 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=105;Dels=0.00;FS=7.647;HaplotypeScore=10.2575;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.398;QD=11.17;ReadPosRankSum=2.259;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:2,101:105:99:1206,132,0 chrX 584812 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.41;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1605,180,0 chrX 584830 . T C 1311 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.86;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1344,147,0 chrX 584870 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.43;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1063,114,0 chrX 586112 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.12;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1008,111,0 chrX 586115 . G A 1004 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.31;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1037,111,0 chrX 586163 . A G 1040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.933;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.290;QD=21.67;ReadPosRankSum=1.659;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1073,120,0 chrX 586827 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.63;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1415,159,0 chrX 587344 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.24;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1551,174,0 chrX 587575 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.90;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2023,216,0 chrX 587592 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.829;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.971;QD=19.02;ReadPosRankSum=2.276;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1650,180,0 chrX 587671 . G T 2188 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2221,234,0 chrX 587843 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.20;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1742,195,0 chrX 587888 . G A 2066 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.68;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2099,231,0 chrX 588782 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.23;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2092,234,0 chrX 588893 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.00;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1671,177,0 chrX 589176 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.7093;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1704,189,0 chrX 589855 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.16;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1159,123,0 chrX 589903 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.147;QD=23.92;ReadPosRankSum=1.674;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1444,162,0 chrX 589961 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.52;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1238,135,0 chrX 590030 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.39;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1106,123,0 chrX 590069 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.97;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,33:37:84:735,84,0 chrX 590113 . T G 607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=3.144;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.313;QD=18.39;ReadPosRankSum=1.628;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:69:640,69,0 chrX 590592 . T A 1288 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1321,150,0 chrX 590713 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.27;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1947,210,0 chrX 591148 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=15.67;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1553,174,0 chrX 591475 . C T 2797 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.11;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2830,300,0 chrX 591544 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.72;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2296,240,0 chrX 591826 . T C 2282 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.56;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2315,264,0 chrX 591944 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=6.256;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.852;QD=21.41;ReadPosRankSum=2.397;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2067,225,0 chrX 591972 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.76;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1871,210,0 chrX 592084 . A G 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=2.845;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.071;QD=20.61;ReadPosRankSum=2.351;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2094,228,0 chrX 592549 . A T 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.257;DP=132;Dels=0.00;FS=5.196;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.033;QD=19.86;ReadPosRankSum=3.324;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:4,128:132:99:2654,285,0 chrX 592918 . G C 1843 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.71;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1876,207,0 chrX 593074 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=4.033;HaplotypeScore=5.0705;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.321;QD=19.39;ReadPosRankSum=1.689;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1642,180,0 chrX 593077 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=10.7861;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.57;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1574,168,0 chrX 593110 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.56;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1891,198,0 chrX 593414 . C G 1121 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.02;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1154,129,0 chrX 593953 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.32;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2377,261,0 chrX 594047 . G T 1607 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3572;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.13;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1640,177,0 chrX 594122 . G C 1718 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1751,192,0 chrX 595037 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1254,132,0 chrX 595640 . G C 1356 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.38;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1389,156,0 chrX 595994 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-1.369;QD=20.11;ReadPosRankSum=1.699;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2145,237,0 chrX 596003 . A C 1901 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.46;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1934,210,0 chrX 596023 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.71;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2141,228,0 chrX 596273 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.20;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2275,243,0 chrX 596360 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.6007;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.87;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2537,273,0 chrX 596468 . G C 2063 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.49;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2096,231,0 chrX 596987 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.38;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1582,180,0 chrX 598115 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1620,180,0 chrX 598202 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.69;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1984,219,0 chrX 598360 . T A 1168 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.69;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1201,135,0 chrX 598472 . A C 1409 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.85;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1442,156,0 chrX 598914 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.97;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1342,147,0 chrX 598922 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=16.63;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1280,138,0 chrX 598932 . T C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=0.000;QD=15.74;ReadPosRankSum=1.641;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1229,138,0 chrX 599268 . G A 3483.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.4479;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.22;SB=-1.885e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:3483,375,0 chrX 599394 . T C 3412.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=11.2205;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.496;QD=22.60;ReadPosRankSum=2.401;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3412,387,0 chrX 600173 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.5417;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.59;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1804,201,0 chrX 600241 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.12;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1385,150,0 chrX 600323 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.36;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1540,168,0 chrX 600672 . C A 2404 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.06;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2437,267,0 chrX 600970 . A G 2406 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.05;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2439,276,0 chrX 601098 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=14.28;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1004,108,0 chrX 601100 . T C 985 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=13.87;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1018,111,0 chrX 601322 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.09;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1680,180,0 chrX 601938 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.86;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2306,252,0 chrX 602133 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.51;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1551,174,0 chrX 602432 . A G 1022 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=18.93;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1055,120,0 chrX 602445 . T C 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-0.894;QD=16.40;ReadPosRankSum=1.676;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1099,123,0 chrX 602448 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.95;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:990,108,0 chrX 602469 . C T 1034 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=16.16;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1067,117,0 chrX 602680 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.37;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1552,165,0 chrX 602831 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.88;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2521,270,0 chrX 602878 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.78;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2060,216,0 chrX 603039 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5282;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.86;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1493,165,0 chrX 603807 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.68;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2018,225,0 chrX 606423 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.07;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1635,180,0 chrX 606584 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.21;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2458,279,0 chrX 606614 . T G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.583;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.448;QD=18.94;ReadPosRankSum=1.693;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1738,198,0 chrX 606777 . C G 816 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=58.9570;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=10.46;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:96:849,96,0 chrX 606787 . T A 643 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=10.54;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:676,84,0 chrX 606788 . C A 530 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=8.69;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:72:563,72,0 chrX 606789 . C A 497 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=8.15;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:69:530,69,0 chrX 606791 . C T 334 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=5.39;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:48:367,48,0 chrX 606792 . T C 333 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.31;MQ0=0;QD=5.37;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:48:366,48,0 chrX 606841 . T C 965 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=13.40;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:998,111,0 chrX 606979 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.34;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1264,138,0 chrX 607047 . T C 880 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=13.75;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:913,105,0 chrX 607128 . A G 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-0.050;QD=13.56;ReadPosRankSum=2.818;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:96:860,96,0 chrX 607230 . C T 412 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=13.73;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:48:445,48,0 chrX 607973 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=7.0026;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.19;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1397,150,0 chrX 608184 . A T 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=3.053;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.241;QD=20.85;ReadPosRankSum=2.330;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:93:888,93,0 chrX 608227 . A T 1285 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.54;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1318,138,0 chrX 608256 . C A 1427 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.28;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1460,159,0 chrX 608323 . G A 2488 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.16;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2521,273,0 chrX 609746 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.32;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2076,231,0 chrX 610450 . T G 2175 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.42;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2208,255,0 chrX 610784 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=16.89;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1638,174,0 chrX 610792 . C A 1529 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.9025;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=14.99;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1562,168,0 chrX 611484 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.52;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1848,204,0 chrX 611869 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.18;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1184,132,0 chrX 612134 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.55;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1882,204,0 chrX 612176 . A G 812 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.28;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:845,96,0 chrX 612199 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=14.11;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:569,60,0 chrX 612210 . A C 421 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.03;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:51:454,51,0 chrX 612277 . C G 1203 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.11;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1236,135,0 chrX 612442 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.15;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1725,186,0 chrX 613234 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.36;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1059,114,0 chrX 613237 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.92;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1017,111,0 chrX 613531 . T C 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=85;Dels=0.00;FS=3.032;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.728;QD=18.78;ReadPosRankSum=2.391;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,81:85:99:1629,186,0 chrX 613750 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.51;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1241,141,0 chrX 614058 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.28;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1726,189,0 chrX 614575 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.62;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1485,168,0 chrX 614663 . T C 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=74;Dels=0.00;FS=4.424;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.107;QD=16.08;ReadPosRankSum=1.684;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1223,135,0 chrX 614716 . A T 1555 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.4418;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.01;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1588,174,0 chrX 614812 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.43;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1340,144,0 chrX 614889 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.886;DP=79;Dels=0.00;FS=5.722;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.988;QD=19.18;ReadPosRankSum=2.911;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1548,174,0 chrX 615114 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=3.522;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.529;QD=19.90;ReadPosRankSum=1.684;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1486,168,0 chrX 615149 . G C 1400 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.90;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1433,159,0 chrX 615169 . C G 1612 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.21;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1645,186,0 chrX 615206 . C G 1620 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.25;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1653,189,0 chrX 615340 . A C 883 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.31;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:916,102,0 chrX 615401 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.18;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1163,123,0 chrX 615669 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.15;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1468,156,0 chrX 615743 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.19;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1653,186,0 chrX 615792 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.16;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1384,153,0 chrX 616034 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.49;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1787,192,0 chrX 616056 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.19;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1622,180,0 chrX 616115 . G A 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-2.070;QD=18.13;ReadPosRankSum=-0.071;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,50:53:73:994,73,0 chrX 616200 . G C 945 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.83;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:978,108,0 chrX 616233 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.59;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1352,147,0 chrX 616390 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.61;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1688,192,0 chrX 616396 . T C 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=94;Dels=0.00;FS=2.460;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.022;QD=17.83;ReadPosRankSum=2.925;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1709,186,0 chrX 617338 . G T 1613 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1646,180,0 chrX 617649 . T C 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=65;Dels=0.00;FS=3.075;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.791;QD=15.94;ReadPosRankSum=2.373;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:99:1069,120,0 chrX 617775 . T A 2139 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.00;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2172,237,0 chrX 617835 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.73;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1221,135,0 chrX 617872 . C G 964 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=15.30;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:997,111,0 chrX 617888 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=13.86;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:851,93,0 chrX 617903 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=16.90;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1081,120,0 chrX 617904 . C A 1073 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=17.31;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1106,120,0 chrX 618088 . T A 1963 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.5013;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.70;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1996,216,0 chrX 618157 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.74;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1775,201,0 chrX 618202 . T A 2104 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=24.47;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2137,228,0 chrX 618545 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.27;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1777,195,0 chrX 618797 . G A 2298 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.53;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2331,252,0 chrX 619267 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.481;QD=20.30;ReadPosRankSum=1.682;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1454,162,0 chrX 619858 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=25.71;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1293,138,0 chrX 620054 . T C 802 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.68;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:835,93,0 chrX 620141 . A T 595 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=12.66;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:69:628,69,0 chrX 620176 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=16.61;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:631,66,0 chrX 620205 . C A 437 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=16.19;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:51:470,51,0 chrX 620255 . T A 432 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.74;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:465,51,0 chrX 620267 . C A 501 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.78;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:57:534,57,0 chrX 620371 . T C 580 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=18.12;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:613,69,0 chrX 620736 . T G 13.25 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;DP=59;Dels=0.00;FS=6.194;HaplotypeScore=52.1472;MLEAC=1;MLEAF=0.500;MQ=55.83;MQ0=0;MQRankSum=-1.259;QD=0.22;ReadPosRankSum=-2.605;SB=-2.804e+01 GT:AD:DP:GQ:PL 0/1:56,3:59:18:43,0,18 chrX 621165 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.79;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,222,0 chrX 621779 . A G 2021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1657;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.848;QD=20.62;ReadPosRankSum=1.661;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2054,231,0 chrX 621797 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.18;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1970,210,0 chrX 622386 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.72;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1944,207,0 chrX 622424 . A G 2265 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.22;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2298,258,0 chrX 622799 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=17.03;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1361,153,0 chrX 622874 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.02;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1548,168,0 chrX 623040 . T C 2353 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.61;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2386,270,0 chrX 623061 . T C 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.482;QD=19.60;ReadPosRankSum=1.701;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2209,246,0 chrX 623184 . C G 1758 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.44;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1791,207,0 chrX 623186 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.55;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1886,207,0 chrX 623961 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.49;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2000,213,0 chrX 624069 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.9367;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.00;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,207,0 chrX 624405 . T C 894 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.68;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:927,102,0 chrX 624474 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=14.31;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:906,99,0 chrX 625114 . C A 1465 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=16.84;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1498,162,0 chrX 625188 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.21;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1496,168,0 chrX 625191 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.96;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1441,156,0 chrX 625757 . A G 1114 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=15.05;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1147,126,0 chrX 626304 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.119;QD=21.31;ReadPosRankSum=1.673;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1269,141,0 chrX 626736 . A C 1354 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.16;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1387,156,0 chrX 626818 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.32;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1347,144,0 chrX 626826 . A C 1389 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.03;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1422,159,0 chrX 626887 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.670;QD=18.64;ReadPosRankSum=1.670;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1077,120,0 chrX 627030 . C T 553 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=15.80;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:63:586,63,0 chrX 627134 . T C 704 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.71;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:737,84,0 chrX 627169 . C A 780 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.50;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:813,87,0 chrX 627282 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.94;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1478,159,0 chrX 627341 . T C 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.789;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.234;QD=22.24;ReadPosRankSum=2.782;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:2124,217,0 chrX 628048 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.00;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1988,210,0 chrX 628564 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.25;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1702,189,0 chrX 628891 . C T 2286 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.3708;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.88;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2319,255,0 chrX 629091 . T C 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=78;Dels=0.00;FS=2.645;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.795;QD=19.83;ReadPosRankSum=2.385;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,74:78:99:1580,180,0 chrX 629161 . A T 1277 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.35;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1310,144,0 chrX 629178 . A C 1141 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=17.03;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1174,132,0 chrX 629495 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.34;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1270,135,0 chrX 629879 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.93;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1432,159,0 chrX 630494 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.56;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2402,261,0 chrX 632330 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.63;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2273,252,0 chrX 633240 . A C 1243 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.38;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1276,141,0 chrX 633350 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8791;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.787;QD=20.14;ReadPosRankSum=1.687;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1604,177,0 chrX 633390 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.18;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1918,207,0 chrX 633743 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.37;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2009,225,0 chrX 634421 . T C 1488 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.30;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1521,168,0 chrX 634423 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.86;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1587,168,0 chrX 634484 . G C 1128 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.09;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1161,129,0 chrX 634657 . G C 1568 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.08;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1601,177,0 chrX 634739 . T A 515 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=13.92;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:548,60,0 chrX 635405 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.64;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1853,213,0 chrX 635420 . A G 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.304;QD=22.51;ReadPosRankSum=0.340;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1586,174,0 chrX 635444 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.35;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1143,123,0 chrX 635927 . T A 1083 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1116,120,0 chrX 636245 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7666;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.74;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1632,174,0 chrX 636485 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.17;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1718,189,0 chrX 636720 . G T 886 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.28;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:919,99,0 chrX 637056 . T C 930 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.98;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:963,111,0 chrX 637548 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=15.24;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1374,147,0 chrX 637564 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=13.82;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1291,141,0 chrX 637574 . C T 1210 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=12.74;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1243,132,0 chrX 637972 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.42;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1912,210,0 chrX 638048 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.92;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2669,285,0 chrX 638196 . A G 3997.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.095;DP=195;Dels=0.00;FS=2.580;HaplotypeScore=21.5375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.120;QD=20.50;ReadPosRankSum=2.374;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:2,192:195:99:3997,447,0 chrX 638730 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.51;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1945,222,0 chrX 638901 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.38;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1267,141,0 chrX 639041 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.59;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1989,222,0 chrX 639136 . G T 1524 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4277;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.81;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1557,165,0 chrX 639270 . T C 1089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=5.0405;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-0.540;QD=17.85;ReadPosRankSum=1.675;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1122,129,0 chrX 639288 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=19.06;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1310,138,0 chrX 639321 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=60;Dels=0.00;FS=2.982;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;MQRankSum=-1.319;QD=12.82;ReadPosRankSum=2.241;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:90:802,90,0 chrX 639332 . A G 737 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=13.65;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:770,87,0 chrX 639333 . T G 738 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=13.42;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:771,87,0 chrX 639365 . A C 1203 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.96;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1236,138,0 chrX 639455 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.64;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1349,150,0 chrX 639618 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=15.66;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1004,114,0 chrX 639731 . T C 257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;MQRankSum=-1.277;QD=6.76;ReadPosRankSum=1.094;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:33:290,33,0 chrX 639986 . G C 563 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=23.8071;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=11.49;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:596,69,0 chrX 640028 . C T 179.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.038;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=0.728;QD=3.20;ReadPosRankSum=-0.508;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:24:212,24,0 chrX 640236 . A G 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=7.443;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.515;QD=22.12;ReadPosRankSum=1.670;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2510,279,0 chrX 640392 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.26;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2018,219,0 chrX 640468 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5811;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.77;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1810,195,0 chrX 640502 . G C 1386 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.09;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1419,156,0 chrX 640718 . A G 2500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=115;Dels=0.00;FS=2.974;HaplotypeScore=7.1303;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.246;QD=21.74;ReadPosRankSum=2.407;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2533,282,0 chrX 641019 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.11;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,128:131:99:2799,303,0 chrX 641050 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=133;Dels=0.00;FS=3.571;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.181;QD=17.92;ReadPosRankSum=1.706;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2416,279,0 chrX 641241 . C T 2798 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.16;SB=-1.780e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2831,306,0 chrX 641346 . T C 2707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=159;Dels=0.00;FS=3.813;HaplotypeScore=19.4496;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.282;QD=17.03;ReadPosRankSum=1.710;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:1,155:159:99:2740,303,0 chrX 641571 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.11;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1393,153,0 chrX 641631 . T C 982 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=15.59;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1015,117,0 chrX 641671 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=13.78;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1632,177,0 chrX 641726 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=11.44;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1188,132,0 chrX 641753 . G A 782 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=12.61;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:87:815,87,0 chrX 641813 . T G 769 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.78;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:802,90,0 chrX 641931 . T C 282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.800;DP=23;Dels=0.00;FS=3.203;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.164;QD=12.26;ReadPosRankSum=2.237;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:2,21:23:36:315,36,0 chrX 642317 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.68;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1415,162,0 chrX 642324 . A G 1398 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.89;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1431,162,0 chrX 642375 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.29;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1576,168,0 chrX 642510 . T C 1172 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.93;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1205,132,0 chrX 642579 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.03;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1403,156,0 chrX 643441 . G C 2668 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.87;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2701,306,0 chrX 643548 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.93;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2026,219,0 chrX 643787 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.94;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1766,198,0 chrX 643946 . C A 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.2407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1780,192,0 chrX 644170 . C G 2156 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4813;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=22.46;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2189,252,0 chrX 644183 . C G 2116 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.75;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2149,243,0 chrX 644226 . G A 2228 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.88;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2261,261,0 chrX 644274 . A C 3032 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.32;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:3065,345,0 chrX 644536 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.46;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2857,306,0 chrX 644548 . T G 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=148;Dels=0.00;FS=13.452;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.349;QD=19.12;ReadPosRankSum=2.952;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:3,144:148:99:2863,318,0 chrX 644677 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.27;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2288,240,0 chrX 644706 . A T 2216 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.33;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2249,249,0 chrX 644859 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.70;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2522,273,0 chrX 644889 . T G 2137 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.03;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2170,249,0 chrX 644934 . A T 1818 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.01;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1851,198,0 chrX 644952 . A C 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.903;QD=21.81;ReadPosRankSum=1.683;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1603,183,0 chrX 645026 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.16;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1828,198,0 chrX 645177 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.614;QD=21.12;ReadPosRankSum=1.693;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1892,207,0 chrX 645288 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.34;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2297,249,0 chrX 645361 . A T 2120 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.65;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2153,231,0 chrX 645565 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=24.60;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2567,279,0 chrX 645969 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=15.49;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1009,114,0 chrX 645972 . G A 1054 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.17;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1087,117,0 chrX 646018 . A C 1018 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=19.58;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1051,117,0 chrX 646023 . G A 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=0.267;QD=18.58;ReadPosRankSum=-1.266;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1018,111,0 chrX 646155 . C T 978 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.05;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1011,111,0 chrX 646356 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=25.50;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1104,120,0 chrX 646377 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.64;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:920,102,0 chrX 646395 . T A 920 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.00;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:953,102,0 chrX 646407 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.84;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:906,99,0 chrX 646496 . T C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=60;Dels=0.00;FS=7.214;HaplotypeScore=3.9680;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.733;QD=19.58;ReadPosRankSum=2.367;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,57:60:99:1208,138,0 chrX 646557 . T A 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=64.7070;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=0.000;QD=19.39;ReadPosRankSum=1.683;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1410,150,0 chrX 646595 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=65.7226;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=15.83;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1125,126,0 chrX 646775 . T A 1128 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.14;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1161,123,0 chrX 646873 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.05;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1393,147,0 chrX 647136 . A G 1577 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.19;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1610,177,0 chrX 647196 . C T 750 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.30;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:87:783,87,0 chrX 648002 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.72;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1847,198,0 chrX 648026 . T A 2170 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.49;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2203,237,0 chrX 648251 . C A 1175 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.58;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1208,132,0 chrX 648431 . T C 1905 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.05;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1938,216,0 chrX 648461 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.98;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1760,195,0 chrX 648638 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.76;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1010,114,0 chrX 648980 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.60;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1516,171,0 chrX 649204 . A T 896 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.6211;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=16.59;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:929,99,0 chrX 649217 . A G 652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.184;DP=65;Dels=0.00;FS=2.337;HaplotypeScore=38.6016;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.714;QD=10.03;ReadPosRankSum=-0.034;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:6,59:65:81:685,81,0 chrX 649481 . A T 2003 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=24.43;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2036,216,0 chrX 649659 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.77;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1170,129,0 chrX 649660 . T C 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.148;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.054;QD=18.18;ReadPosRankSum=1.678;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1215,132,0 chrX 649823 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1917,213,0 chrX 649976 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.85;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,183,0 chrX 650077 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.26;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2202,243,0 chrX 650265 . T C 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-0.277;QD=17.98;ReadPosRankSum=1.525;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:932,105,0 chrX 650270 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=18.75;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1027,114,0 chrX 650297 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=19.42;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1276,138,0 chrX 650299 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=19.48;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1280,138,0 chrX 650350 . A G 1327 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.23;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1360,150,0 chrX 650585 . A G 1855 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.08;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1888,219,0 chrX 650625 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=24.05;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1572,165,0 chrX 650654 . C G 1099 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.55;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1132,126,0 chrX 650707 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.69;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1443,162,0 chrX 650894 . A G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=6.510;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=1.475;QD=21.06;ReadPosRankSum=2.401;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2160,240,0 chrX 650906 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.66;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2016,228,0 chrX 651009 . A C 1487 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.38;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1520,171,0 chrX 651068 . A G 911 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=15.98;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:944,108,0 chrX 651084 . T C 759 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=12.86;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:792,87,0 chrX 651089 . T C 767 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=12.37;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:800,93,0 chrX 651274 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.34;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1527,165,0 chrX 651313 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.39;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1372,153,0 chrX 651316 . G T 1404 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.77;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1437,156,0 chrX 651374 . G T 1678 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.98;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1711,183,0 chrX 651420 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.32;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1696,198,0 chrX 652362 . T C 1672 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.39;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1705,192,0 chrX 652783 . C T 2628 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.28;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2661,288,0 chrX 652822 . G T 2142 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.86;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2175,237,0 chrX 652831 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.97;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2261,243,0 chrX 653144 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.283;QD=18.97;ReadPosRankSum=2.376;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1930,219,0 chrX 653249 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.55;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1927,216,0 chrX 653480 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1455,162,0 chrX 653585 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.78;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1349,153,0 chrX 653755 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.095;QD=21.60;ReadPosRankSum=1.653;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1912,216,0 chrX 653906 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.99;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1987,213,0 chrX 654221 . A G 1168 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7386;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.18;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1201,135,0 chrX 654313 . T A 1457 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.68;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1490,159,0 chrX 654472 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.04;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1254,144,0 chrX 654502 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.64;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1310,138,0 chrX 654612 . A T 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=4.517;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.627;QD=19.58;ReadPosRankSum=1.702;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2304,252,0 chrX 654625 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5440;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.86;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2409,264,0 chrX 655027 . T A 1969 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6776;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.88;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2002,216,0 chrX 655074 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.38;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2021,222,0 chrX 655282 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.635;QD=21.99;ReadPosRankSum=1.683;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1616,180,0 chrX 655382 . G A 2058 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2093;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.39;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2091,237,0 chrX 655475 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1166,126,0 chrX 655589 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.3077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1818,210,0 chrX 655670 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.14;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2956,327,0 chrX 655865 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.76;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1673,180,0 chrX 656021 . A T 1954 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.57;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1987,210,0 chrX 656275 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.10;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1646,180,0 chrX 656454 . A G 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=3.070;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.020;QD=21.41;ReadPosRankSum=1.637;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1596,177,0 chrX 656567 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.11;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1669,177,0 chrX 656822 . T C 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.7485;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.523;QD=17.98;ReadPosRankSum=1.649;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1525,171,0 chrX 656961 . A G 1977 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.03;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2010,225,0 chrX 656983 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.17;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1950,219,0 chrX 657034 . A G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.449;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.2682;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.102;QD=19.32;ReadPosRankSum=-1.323;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2158,243,0 chrX 657067 . C G 2111 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.62;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2144,243,0 chrX 657109 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.21;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2559,273,0 chrX 657256 . A G 643 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=14.29;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:676,75,0 chrX 657265 . A C 797 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=14.49;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:93:830,93,0 chrX 657270 . A G 819 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=14.37;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:852,96,0 chrX 657406 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.54;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1476,159,0 chrX 657520 . C A 997 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.66;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1030,111,0 chrX 657541 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.40;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:992,114,0 chrX 658031 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.46;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1547,165,0 chrX 658094 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.01;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1915,207,0 chrX 659565 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.52;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1647,174,0 chrX 659775 . C T 2304 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.73;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2337,258,0 chrX 659931 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.4237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1724,183,0 chrX 660402 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1499,171,0 chrX 660487 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1473,165,0 chrX 660546 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6289;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.25;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1413,153,0 chrX 660786 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.35;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1831,195,0 chrX 660934 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.85;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1847,195,0 chrX 661017 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=6.440;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.295;QD=22.62;ReadPosRankSum=2.398;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2205,243,0 chrX 661171 . T C 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.691;QD=19.79;ReadPosRankSum=1.279;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1695,189,0 chrX 661320 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.84;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1578,174,0 chrX 661503 . A C 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.256;QD=21.75;ReadPosRankSum=-0.563;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1773,198,0 chrX 661626 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.39;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1830,201,0 chrX 661953 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.76;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1560,168,0 chrX 661968 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.81;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1476,168,0 chrX 662262 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.021;QD=22.23;ReadPosRankSum=1.607;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1878,210,0 chrX 663013 . A C 922 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.07;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:955,114,0 chrX 663082 . A G 825 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=13.31;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:858,96,0 chrX 663083 . A G 828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.615;QD=13.14;ReadPosRankSum=1.621;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:96:861,96,0 chrX 663098 . A G 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=4.279;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.346;QD=12.76;ReadPosRankSum=1.640;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1003,111,0 chrX 663261 . T G 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.6050;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.253;QD=16.53;ReadPosRankSum=1.443;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1636,186,0 chrX 663511 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.40;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1050,120,0 chrX 663534 . A T 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.921;HaplotypeScore=4.3292;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.204;QD=15.08;ReadPosRankSum=0.264;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:923,99,0 chrX 663590 . A C 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.274;QD=18.83;ReadPosRankSum=1.681;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1332,150,0 chrX 663968 . T A 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=77;Dels=0.00;FS=6.021;HaplotypeScore=7.2473;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.347;QD=12.30;ReadPosRankSum=0.529;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:980,114,0 chrX 664236 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.86;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1608,171,0 chrX 664330 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=2.932;HaplotypeScore=9.9255;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.808;QD=18.93;ReadPosRankSum=2.396;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2646,294,0 chrX 664516 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=14.8681;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.31;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2248,255,0 chrX 664824 . A G 2553 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.24;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2586,291,0 chrX 665027 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.78;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1932,216,0 chrX 665076 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.30;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1751,186,0 chrX 665087 . T G 1481 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.23;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1514,174,0 chrX 665172 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=20.78;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2007,225,0 chrX 665597 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.9256;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.76;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1140,123,0 chrX 665938 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.23;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1475,162,0 chrX 666046 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.144;QD=20.03;ReadPosRankSum=1.684;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,71:75:99:1535,171,0 chrX 666321 . A C 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=65;Dels=0.00;FS=3.041;HaplotypeScore=6.8219;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.833;QD=20.00;ReadPosRankSum=2.373;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:99:1333,147,0 chrX 666422 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.32;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1482,159,0 chrX 666484 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.90;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1429,165,0 chrX 666622 . A G 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.535;QD=19.63;ReadPosRankSum=1.689;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1643,183,0 chrX 666742 . T G 1379 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.58;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1412,159,0 chrX 667152 . C G 1304 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.11;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1337,147,0 chrX 667389 . A T 1014 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.7652;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.04;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1047,114,0 chrX 667452 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.69;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1170,126,0 chrX 668091 . G C 2238 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.63;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2271,252,0 chrX 668102 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.23;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2075,234,0 chrX 668331 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.80;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:789,87,0 chrX 668393 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=13.89;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1200,132,0 chrX 668723 . A T 1423 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.23;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1456,162,0 chrX 668873 . G A 1129 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.92;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1162,126,0 chrX 668970 . A C 1436 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.7840;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.51;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1469,162,0 chrX 669075 . C A 1215 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.60;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1248,135,0 chrX 669077 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.76;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1416,156,0 chrX 669427 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.01;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1654,186,0 chrX 669743 . A C 2377 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.04;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2410,264,0 chrX 669845 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1705,186,0 chrX 670061 . G A 1060 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=15.14;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:70:99:1093,120,0 chrX 670398 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1184,132,0 chrX 670778 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.84;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1402,153,0 chrX 670831 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.41;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1182,126,0 chrX 671070 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.86;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1556,165,0 chrX 671129 . T A 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.27;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1837,201,0 chrX 671903 . A G 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.182;QD=20.54;ReadPosRankSum=2.369;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1286,141,0 chrX 672140 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2372,252,0 chrX 672728 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.74;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1170,123,0 chrX 672815 . A G 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.096;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=0.781;QD=11.63;ReadPosRankSum=1.664;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:69:638,69,0 chrX 672937 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.79;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1355,150,0 chrX 672968 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.27;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1138,123,0 chrX 672973 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.18;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1133,126,0 chrX 673380 . G C 4172.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.19;SB=-2.182e+03 GT:AD:DP:GQ:PL 1/1:0,187:188:99:4172,474,0 chrX 673554 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.55;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1841,195,0 chrX 673602 . G A 2955 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=5.2917;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=18.94;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,156:156:99:2988,324,0 chrX 673630 . G A 3383.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=5.0300;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=18.69;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3383,363,0 chrX 673644 . G A 3437.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=19.75;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3437,378,0 chrX 673646 . T A 3589.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=20.16;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,178:178:99:3589,384,0 chrX 673954 . A G 2523 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.71;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2556,282,0 chrX 674143 . G C 1284 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.71;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1317,147,0 chrX 674425 . A C 1507 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.53;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1540,171,0 chrX 674560 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=16.41;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:706,78,0 chrX 674570 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=14.57;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:44:75:674,75,0 chrX 674607 . T C 698 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=13.96;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:731,81,0 chrX 675076 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.591;QD=20.86;ReadPosRankSum=1.697;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2098,228,0 chrX 675286 . T A 1077 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.58;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1110,123,0 chrX 675681 . A G 1487 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.06;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1520,168,0 chrX 675709 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=15.09;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1648,183,0 chrX 675803 . T C 2351 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2384,270,0 chrX 676406 . T C 2327 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2360,261,0 chrX 676646 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.74;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1796,195,0 chrX 676680 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.53;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1813,195,0 chrX 677087 . A G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=64;Dels=0.00;FS=2.691;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.412;QD=19.84;ReadPosRankSum=2.293;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1303,144,0 chrX 677297 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2658,291,0 chrX 677385 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=24.01;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1714,189,0 chrX 677396 . A G 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=63;Dels=0.00;FS=10.109;HaplotypeScore=50.1471;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.334;QD=18.17;ReadPosRankSum=3.270;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:8,55:63:99:1178,116,0 chrX 677498 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.94;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1613,180,0 chrX 677527 . A G 1145 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.41;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1178,132,0 chrX 677705 . T C 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.148;QD=16.21;ReadPosRankSum=1.690;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1395,156,0 chrX 677706 . T C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.783;DP=86;Dels=0.00;FS=2.635;HaplotypeScore=4.5270;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.072;QD=15.42;ReadPosRankSum=2.247;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1359,131,0 chrX 677952 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.74;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1275,144,0 chrX 678170 . A T 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=106;Dels=0.00;FS=2.831;HaplotypeScore=14.2896;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.569;QD=18.26;ReadPosRankSum=2.357;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1969,216,0 chrX 678464 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1516;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.92;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1686,189,0 chrX 678652 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=15.37;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1370,153,0 chrX 678791 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=13.62;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:932,105,0 chrX 680514 . A G 1794 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.94;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1827,201,0 chrX 681525 . G T 1582 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.06;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1615,174,0 chrX 681843 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.37;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1465,156,0 chrX 681969 . G T 1608 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.65;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1641,180,0 chrX 682202 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.29;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:991,105,0 chrX 682390 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.19;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1697,180,0 chrX 682401 . C G 1771 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.42;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1804,204,0 chrX 682605 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.62;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2101,222,0 chrX 682740 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.22;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1724,192,0 chrX 682784 . A C 1669 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9997;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.87;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1702,195,0 chrX 683353 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.37;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1951,213,0 chrX 683365 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=97;Dels=0.00;FS=8.966;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.136;QD=18.73;ReadPosRankSum=3.366;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1850,201,0 chrX 683647 . T A 1484 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.33;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1517,162,0 chrX 683733 . T G 2114 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.93;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2147,240,0 chrX 683820 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.58;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1334,150,0 chrX 683975 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.01;FS=7.494;HaplotypeScore=9.7931;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.308;QD=19.27;ReadPosRankSum=1.685;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1459,165,0 chrX 684045 . G A 1073 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=14.50;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1106,120,0 chrX 684046 . T A 1090 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=14.93;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1123,120,0 chrX 684047 . G A 1091 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=14.95;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1124,120,0 chrX 684065 . T A 891 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=10.48;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:924,99,0 chrX 684066 . G T 815 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=9.48;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:96:848,96,0 chrX 684078 . A C 939 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=39.34;MQ0=0;QD=10.55;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:972,108,0 chrX 684301 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.46;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1750,189,0 chrX 684348 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.72;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2075,237,0 chrX 684510 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.18;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2354,261,0 chrX 684758 . G C 2214 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.71;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2247,246,0 chrX 685154 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1383,153,0 chrX 685208 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1387,147,0 chrX 685325 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1273,141,0 chrX 685862 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2845;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.66;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1766,195,0 chrX 685982 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=79;Dels=0.00;FS=3.188;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.947;QD=20.33;ReadPosRankSum=-0.855;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,75:79:99:1639,183,0 chrX 686102 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.55;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1589,177,0 chrX 686736 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.4212;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.70;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2235,252,0 chrX 686894 . A C 1251 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.85;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1284,144,0 chrX 687329 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=2.957;HaplotypeScore=5.0958;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.138;QD=21.37;ReadPosRankSum=2.396;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2020,225,0 chrX 687612 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.91;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2089,222,0 chrX 688286 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1323,153,0 chrX 688400 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1478,162,0 chrX 688565 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.24;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1343,150,0 chrX 689090 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:823,90,0 chrX 689222 . C T 570 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.83;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:36:63:603,63,0 chrX 689592 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.78;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1272,138,0 chrX 689796 . G A 2275 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.87;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2308,246,0 chrX 690593 . G T 2634 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.77;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2667,291,0 chrX 690963 . G T 1611 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1644,177,0 chrX 691035 . T A 1363 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.47;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1396,153,0 chrX 691434 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.74;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1898,216,0 chrX 691520 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.31;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1141,123,0 chrX 691772 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1705,183,0 chrX 692169 . A T 2931 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.04;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2964,324,0 chrX 692804 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.51;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1606,174,0 chrX 692808 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.02;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1650,177,0 chrX 692865 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.12;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1505,162,0 chrX 693120 . C T 2468 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.23;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2501,273,0 chrX 693187 . T C 1939 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.41;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1972,222,0 chrX 693257 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.95;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1644,174,0 chrX 694022 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.30;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1326,147,0 chrX 694041 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.58;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1092,123,0 chrX 694098 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.61;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1558,171,0 chrX 694296 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.466;QD=21.54;ReadPosRankSum=1.688;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1713,189,0 chrX 694428 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.27;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1607,174,0 chrX 694713 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.35;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1575,171,0 chrX 694743 . A C 1032 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=17.49;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1065,117,0 chrX 695217 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.38;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1487,159,0 chrX 695370 . A G 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.516;QD=17.97;ReadPosRankSum=1.678;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1201,135,0 chrX 695712 . G C 2229 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2799;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.83;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2262,255,0 chrX 696080 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.44;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1855,201,0 chrX 696289 . T C 1229 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.19;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1262,141,0 chrX 696586 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1904,207,0 chrX 697206 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.46;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1711,186,0 chrX 697470 . G C 1728 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.09;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1761,198,0 chrX 697486 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.21;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1872,210,0 chrX 697654 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.55;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1554,165,0 chrX 697728 . G A 1995 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0075;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.93;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2028,222,0 chrX 697824 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3436;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.05;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2430,264,0 chrX 698028 . A T 1023 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.94;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1056,117,0 chrX 698322 . A T 1606 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.00;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1639,180,0 chrX 698725 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2178,231,0 chrX 698785 . A G 1786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.301;QD=19.20;ReadPosRankSum=1.694;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1819,207,0 chrX 698908 . A G 1869 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.99;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1902,210,0 chrX 699021 . T C 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=2.860;HaplotypeScore=14.1733;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.535;QD=19.60;ReadPosRankSum=2.412;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2601,294,0 chrX 699058 . A T 1978 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2011,219,0 chrX 699108 . T C 1937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=16.2414;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.301;QD=21.05;ReadPosRankSum=1.694;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1970,222,0 chrX 699217 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.12;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2469,276,0 chrX 699340 . G A 2719 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.29;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2752,297,0 chrX 699851 . G A 3048 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.75;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3081,330,0 chrX 700864 . T A 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.083;QD=22.48;ReadPosRankSum=1.624;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1472,156,0 chrX 701241 . T A 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=15.5277;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.768;QD=16.27;ReadPosRankSum=1.661;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1644,177,0 chrX 701478 . C T 2265 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.99;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2298,252,0 chrX 701827 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.20;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1925,207,0 chrX 701892 . A G 2634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=140;Dels=0.00;FS=2.588;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-1.741;QD=18.81;ReadPosRankSum=2.950;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2667,300,0 chrX 701906 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=18.03;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2755,306,0 chrX 701912 . G A 2651 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=18.03;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2684,294,0 chrX 701944 . C G 3221.02 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=17.04;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,189:189:99:3254,360,0 chrX 702141 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.233;DP=112;Dels=0.00;FS=3.732;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=1;MQRankSum=-1.482;QD=17.22;ReadPosRankSum=-0.203;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1962,200,0 chrX 702597 . C A 2111 filter AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=5;QD=17.02;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2144,234,0 chrX 702873 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.75;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1045,120,0 chrX 702971 . G A 947 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=18.21;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:980,105,0 chrX 702986 . C T 746 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=15.54;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:779,90,0 chrX 703302 . G A 600 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.00;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,27:30:66:633,66,0 chrX 703339 . A G 574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=6.173;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.060;QD=19.79;ReadPosRankSum=1.614;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:69:607,69,0 chrX 703480 . G A 127.13 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=35.1307;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=3.10;SB=-1.401e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:18:160,18,0 chrX 703814 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.59;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1705,183,0 chrX 703858 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.81;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2474,267,0 chrX 703893 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.36;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2883,315,0 chrX 704310 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.00;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1673,180,0 chrX 704425 . G A 1979 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.21;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2012,222,0 chrX 704426 . C A 2008 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.69;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2041,219,0 chrX 704535 . G A 875 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=12.32;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:908,99,0 chrX 704627 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.39;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1402,150,0 chrX 704699 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.26;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1436,162,0 chrX 704768 . C G 1274 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.91;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1307,147,0 chrX 704987 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.35;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1226,135,0 chrX 704998 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.25;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1203,129,0 chrX 705014 . T C 1047 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=14.96;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1080,120,0 chrX 705275 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=16.37;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1261,141,0 chrX 705450 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.68;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1034,111,0 chrX 705542 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.61;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1826,201,0 chrX 705639 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.54;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2168,231,0 chrX 705848 . G C 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.18;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1405,156,0 chrX 705865 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.45;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1317,144,0 chrX 705917 . A G 930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.030;QD=16.32;ReadPosRankSum=1.672;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:963,111,0 chrX 705920 . T C 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=6.221;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=0.125;QD=15.77;ReadPosRankSum=2.841;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:99:932,102,0 chrX 706135 . G A 2181 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2214,249,0 chrX 706484 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=3.352;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;MQRankSum=1.295;QD=21.22;ReadPosRankSum=1.703;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2580,291,0 chrX 706547 . A G 2476 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.34;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2509,279,0 chrX 706853 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1771,189,0 chrX 707018 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.03;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1337,147,0 chrX 707089 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.45;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1277,141,0 chrX 707260 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.80;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1604,171,0 chrX 707578 . A T 2157 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2203;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.15;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2190,234,0 chrX 707659 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.25;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1902,201,0 chrX 708177 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.39;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1235,132,0 chrX 708302 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.91;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1451,165,0 chrX 708320 . A C 1441 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.47;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1474,165,0 chrX 708329 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.19;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1446,153,0 chrX 708931 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1013,117,0 chrX 709084 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.94;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1666,186,0 chrX 709147 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.07;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1997,228,0 chrX 709162 . A T 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-0.311;QD=18.04;ReadPosRankSum=1.703;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2144,234,0 chrX 709202 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=16.53;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1752,186,0 chrX 709369 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.20;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2386,255,0 chrX 709489 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.86;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1622,186,0 chrX 709864 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.80;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2108,225,0 chrX 709925 . C A 2157 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.71;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2190,246,0 chrX 710013 . A G 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=70;Dels=0.00;FS=3.209;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.629;QD=20.04;ReadPosRankSum=1.681;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,66:70:99:1436,165,0 chrX 711001 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.00;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2697,303,0 chrX 711064 . G T 2706 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.82;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2739,297,0 chrX 711083 . A T 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=125;Dels=0.00;FS=10.127;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.057;QD=17.82;ReadPosRankSum=2.863;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2260,240,0 chrX 711089 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.016;HaplotypeScore=4.3321;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.532;QD=16.98;ReadPosRankSum=2.408;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2037,231,0 chrX 711174 . G T 2387 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.50;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2420,261,0 chrX 711200 . T C 2479 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.49;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2512,288,0 chrX 711237 . G T 2344 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.70;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2377,267,0 chrX 711284 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2027;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.29;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2311,246,0 chrX 711399 . C T 2170 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.37;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2203,237,0 chrX 711565 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.41;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1543,165,0 chrX 711577 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.577;QD=19.75;ReadPosRankSum=1.682;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1396,156,0 chrX 711580 . C A 1253 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.70;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1286,144,0 chrX 711818 . A T 1592 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.23;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1625,177,0 chrX 712026 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.85;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1519,168,0 chrX 712319 . T C 2506 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=24.57;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2539,279,0 chrX 712403 . G T 1747 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.20;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1780,189,0 chrX 712580 . A G 1988 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.49;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2021,225,0 chrX 712640 . C G 1666 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.15;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1699,186,0 chrX 712726 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=2;QD=17.09;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1486,162,0 chrX 712728 . C T 1394 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=2;QD=16.80;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1427,156,0 chrX 712774 . T G 721 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.02;MQ0=4;QD=11.27;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:84:754,84,0 chrX 712830 . A G 569 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=18.81;MQ0=5;QD=8.49;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:66:602,66,0 chrX 712932 . T C 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=98;Dels=0.00;FS=6.831;HaplotypeScore=5.7878;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=1;MQRankSum=2.245;QD=17.37;ReadPosRankSum=2.142;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:3,94:98:99:1735,180,0 chrX 712948 . A G 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=1;MQRankSum=0.666;QD=15.37;ReadPosRankSum=2.048;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:3,96:101:99:1585,158,0 chrX 712951 . T A 1420 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=1;QD=14.20;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1453,159,0 chrX 712983 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=0;QD=11.29;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:993,111,0 chrX 712995 . T C 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.425;DP=89;Dels=0.00;FS=13.303;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=44.11;MQ0=0;MQRankSum=-2.489;QD=10.22;ReadPosRankSum=4.640;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:8,81:89:99:943,105,0 chrX 713263 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.424;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-0.535;QD=21.05;ReadPosRankSum=1.701;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2349,258,0 chrX 713510 . A G 2143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=112;Dels=0.00;FS=8.669;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=0.593;QD=19.13;ReadPosRankSum=2.033;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:4,107:112:99:2176,243,0 chrX 713821 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.13;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2207,243,0 chrX 714105 . A G 2173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=5.418;HaplotypeScore=5.7105;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-0.442;QD=22.87;ReadPosRankSum=1.585;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2206,243,0 chrX 714203 . A G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101;DP=88;Dels=0.00;FS=0.936;HaplotypeScore=6.1858;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=5;MQRankSum=-4.246;QD=0.90;ReadPosRankSum=0.490;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,24:88:99:109,0,1058 chrX 714218 . A G 838 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.828;DP=62;Dels=0.00;FS=13.523;HaplotypeScore=5.1756;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=5;MQRankSum=3.015;QD=13.52;ReadPosRankSum=-1.265;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:7,55:62:96:871,96,0 chrX 714240 . A C 197.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=51;Dels=0.00;FS=4.988;HaplotypeScore=4.6831;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=10;MQRankSum=-1.141;QD=3.86;ReadPosRankSum=0.549;SB=-5.202e+01 GT:AD:DP:GQ:PL 1/1:1,49:51:27:230,27,0 chrX 714246 . T C 171.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.760;DP=52;Dels=0.00;FS=17.685;HaplotypeScore=5.8436;MLEAC=2;MLEAF=1.00;MQ=21.44;MQ0=10;MQRankSum=3.822;QD=3.29;ReadPosRankSum=-0.369;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:21,31:52:24:204,24,0 chrX 714312 . A C 75.51 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.0424;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=36;QD=0.86;SB=-2.875e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:12:108,12,0 chrX 714319 . G T 74.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=37;MQRankSum=-0.187;QD=0.88;ReadPosRankSum=-2.182;SB=-9.751e+01 GT:AD:DP:GQ:PL 1/1:41,43:85:12:107,12,0 chrX 714528 . A C 94.26 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.2438;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=7;QD=1.57;SB=-5.326e+01 GT:AD:DP:GQ:PL 1/1:0,57:60:15:127,15,0 chrX 714534 . T C 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;DP=67;Dels=0.00;FS=3.248;HaplotypeScore=14.7074;MLEAC=1;MLEAF=0.500;MQ=23.54;MQ0=7;MQRankSum=1.643;QD=1.09;ReadPosRankSum=0.527;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:46,21:67:94:103,0,94 chrX 714578 . G A 975.12 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.603;DP=90;Dels=0.00;FS=15.054;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=5;MQRankSum=1.876;QD=10.83;ReadPosRankSum=-2.974;SB=-3.761e+02 GT:AD:DP:GQ:PL 1/1:18,71:90:5:1006,5,0 chrX 714721 . A G 3947.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=4.955;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;MQRankSum=-1.179;QD=22.95;ReadPosRankSum=1.712;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:1,168:172:99:3947,453,0 chrX 714763 . T G 343.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.042;DP=113;Dels=0.00;FS=233.929;HaplotypeScore=67.0308;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=0;MQRankSum=-7.556;QD=3.04;ReadPosRankSum=-6.343;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:65,45:113:99:373,0,1112 chrX 714776 . G A 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.639;DP=98;Dels=0.00;FS=51.452;HaplotypeScore=6.9582;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;MQRankSum=3.744;QD=18.38;ReadPosRankSum=0.309;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:12,86:98:99:1834,179,0 chrX 714798 . C G 1879 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=36.0663;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=14.68;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,122:128:99:1912,210,0 chrX 714879 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.046;DP=102;Dels=0.00;FS=29.675;HaplotypeScore=98.3832;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=0.237;QD=0.32;ReadPosRankSum=-3.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,11:102:63:63,0,1109 chrX 714881 . A G 153.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.537;DP=99;Dels=0.00;FS=3.813;HaplotypeScore=96.0972;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=-0.954;QD=1.55;ReadPosRankSum=-3.561;SB=-3.700e+02 GT:AD:DP:GQ:PL 0/1:51,45:99:99:183,0,957 chrX 714886 . A C 101.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;DP=110;Dels=0.00;FS=37.365;HaplotypeScore=109.0130;MLEAC=1;MLEAF=0.500;MQ=31.13;MQ0=0;MQRankSum=-1.437;QD=0.92;ReadPosRankSum=-1.608;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,16:110:99:131,0,892 chrX 714892 . G T 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;DP=114;Dels=0.00;FS=27.169;HaplotypeScore=104.3885;MLEAC=1;MLEAF=0.500;MQ=31.13;MQ0=0;MQRankSum=0.162;QD=1.56;ReadPosRankSum=-0.078;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:67,35:114:99:208,0,950 chrX 714898 . G A 1378 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=111;Dels=0.00;FS=7.258;HaplotypeScore=144.4196;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;MQRankSum=0.736;QD=12.41;ReadPosRankSum=-1.488;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:17,93:111:99:1411,153,0 chrX 714901 . T A 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.954;DP=118;Dels=0.00;FS=71.302;HaplotypeScore=169.9624;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=0;MQRankSum=-0.744;QD=1.81;ReadPosRankSum=1.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,26:118:99:244,0,937 chrX 714905 . G A 175.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;DP=125;Dels=0.00;FS=63.934;HaplotypeScore=132.8461;MLEAC=1;MLEAF=0.500;MQ=32.24;MQ0=0;MQRankSum=-0.016;QD=1.40;ReadPosRankSum=3.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,22:125:99:205,0,987 chrX 714906 . A G 80.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882;DP=123;Dels=0.00;FS=9.637;HaplotypeScore=129.8774;MLEAC=1;MLEAF=0.500;MQ=31.94;MQ0=0;MQRankSum=-1.631;QD=0.65;ReadPosRankSum=-2.476;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:87,36:123:99:110,0,999 chrX 714907 . A G 229.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;DP=117;Dels=0.00;FS=52.821;HaplotypeScore=119.2908;MLEAC=1;MLEAF=0.500;MQ=31.34;MQ0=0;MQRankSum=0.024;QD=1.96;ReadPosRankSum=3.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,22:117:99:259,0,642 chrX 714910 . T A 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=124.3469;MLEAC=1;MLEAF=0.500;MQ=32.17;MQ0=0;MQRankSum=-2.152;QD=0.20;ReadPosRankSum=-1.761;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:83,18:114:53:53,0,1003 chrX 714915 . A G 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227;DP=118;Dels=0.00;FS=41.037;HaplotypeScore=170.1323;MLEAC=1;MLEAF=0.500;MQ=33.14;MQ0=0;MQRankSum=1.759;QD=1.65;ReadPosRankSum=3.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,23:118:99:225,0,941 chrX 714916 . A C 171.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.536;DP=117;Dels=0.00;FS=49.849;HaplotypeScore=170.1721;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=0;MQRankSum=-0.196;QD=1.46;ReadPosRankSum=3.715;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,22:117:99:201,0,920 chrX 714919 . T G 271.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DP=107;Dels=0.05;FS=50.060;HaplotypeScore=155.0343;MLEAC=1;MLEAF=0.500;MQ=34.04;MQ0=0;MQRankSum=-2.453;QD=2.53;ReadPosRankSum=4.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,26:102:99:301,0,807 chrX 714924 . G A 370.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.634;DP=103;Dels=0.05;FS=10.607;HaplotypeScore=152.2503;MLEAC=1;MLEAF=0.500;MQ=34.22;MQ0=0;MQRankSum=-1.814;QD=3.59;ReadPosRankSum=4.130;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:59,39:98:99:400,0,661 chrX 714927 . C T 399.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.791;DP=104;Dels=0.00;FS=10.288;HaplotypeScore=140.2486;MLEAC=1;MLEAF=0.500;MQ=34.17;MQ0=0;MQRankSum=-1.443;QD=3.84;ReadPosRankSum=3.758;SB=-1.750e+02 GT:AD:DP:GQ:PL 0/1:63,41:104:99:429,0,648 chrX 714929 . G C 206.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DP=107;Dels=0.05;FS=53.473;HaplotypeScore=138.2438;MLEAC=1;MLEAF=0.500;MQ=34.04;MQ0=0;MQRankSum=-1.137;QD=1.93;ReadPosRankSum=4.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,25:102:99:236,0,949 chrX 714931 . A C 172.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;DP=109;Dels=0.00;FS=47.550;HaplotypeScore=109.5413;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=0.026;QD=1.58;ReadPosRankSum=3.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,28:109:99:202,0,893 chrX 714934 . G A 316.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.876;DP=109;Dels=0.00;FS=12.237;HaplotypeScore=100.9804;MLEAC=1;MLEAF=0.500;MQ=34.69;MQ0=0;MQRankSum=-1.103;QD=2.90;ReadPosRankSum=2.392;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:69,40:109:99:346,0,802 chrX 714969 . G A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.100;DP=94;Dels=0.00;FS=2.617;HaplotypeScore=40.2778;MLEAC=1;MLEAF=0.500;MQ=36.57;MQ0=0;MQRankSum=-0.687;QD=0.33;ReadPosRankSum=-2.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,20:94:61:61,0,1124 chrX 715007 . T G 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;DP=76;Dels=0.00;FS=15.409;HaplotypeScore=8.0752;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=0;MQRankSum=-2.580;QD=0.99;ReadPosRankSum=-4.378;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,16:76:99:105,0,1079 chrX 715012 . G A 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;DP=74;Dels=0.00;FS=12.914;HaplotypeScore=4.3421;MLEAC=1;MLEAF=0.500;MQ=41.12;MQ0=0;MQRankSum=-2.077;QD=0.68;ReadPosRankSum=-3.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,14:74:80:80,0,1031 chrX 715015 . A G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DP=74;Dels=0.00;FS=12.911;HaplotypeScore=8.5443;MLEAC=1;MLEAF=0.500;MQ=41.12;MQ0=0;MQRankSum=-1.885;QD=0.54;ReadPosRankSum=-2.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,14:74:70:70,0,1064 chrX 715019 . T G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;DP=74;Dels=0.00;FS=15.542;HaplotypeScore=9.5993;MLEAC=1;MLEAF=0.500;MQ=41.12;MQ0=0;MQRankSum=-1.994;QD=0.66;ReadPosRankSum=-1.635;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,14:74:79:79,0,1026 chrX 715020 . G T 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DP=73;Dels=0.00;FS=12.911;HaplotypeScore=11.1661;MLEAC=1;MLEAF=0.500;MQ=40.80;MQ0=0;MQRankSum=-2.543;QD=0.71;ReadPosRankSum=-1.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,14:73:82:82,0,957 chrX 715023 . A G 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.393;DP=85;Dels=0.00;FS=13.219;HaplotypeScore=31.4622;MLEAC=1;MLEAF=0.500;MQ=38.26;MQ0=0;MQRankSum=-1.704;QD=0.64;ReadPosRankSum=-1.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,20:85:84:84,0,992 chrX 715030 . G A 306.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;DP=96;Dels=0.00;FS=33.917;HaplotypeScore=47.7131;MLEAC=1;MLEAF=0.500;MQ=36.69;MQ0=0;MQRankSum=-3.974;QD=3.19;ReadPosRankSum=-4.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,43:96:99:336,0,812 chrX 715033 . G A 22.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=108;Dels=0.00;FS=1.778;HaplotypeScore=64.9477;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=0;MQRankSum=-1.654;QD=0.20;ReadPosRankSum=-7.063;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:75,33:108:52:52,0,1134 chrX 715050 . G A 150.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=147;Dels=0.00;FS=27.064;HaplotypeScore=91.6004;MLEAC=1;MLEAF=0.500;MQ=32.90;MQ0=0;MQRankSum=-2.826;QD=1.02;ReadPosRankSum=-1.968;SB=-3.200e+02 GT:AD:DP:GQ:PL 0/1:96,51:147:99:180,0,1214 chrX 715051 . A C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.088;DP=152;Dels=0.00;FS=45.405;HaplotypeScore=82.7125;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=-0.503;QD=0.16;ReadPosRankSum=-3.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:126,25:152:54:54,0,1344 chrX 715054 . G T 169.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;DP=159;Dels=0.00;FS=53.706;HaplotypeScore=157.1620;MLEAC=1;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=-2.190;QD=1.06;ReadPosRankSum=0.263;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:100,45:159:99:199,0,1174 chrX 715063 . T G 170.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=162;Dels=0.00;FS=80.420;HaplotypeScore=249.6566;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-1.461;QD=1.05;ReadPosRankSum=-2.460;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:123,39:162:99:200,0,1260 chrX 715064 . G C 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=162;Dels=0.00;FS=91.954;HaplotypeScore=248.0013;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-1.587;QD=1.10;ReadPosRankSum=-1.241;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,44:162:99:209,0,1206 chrX 715066 . A C 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DP=162;Dels=0.00;FS=63.650;HaplotypeScore=150.9053;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-0.549;QD=0.73;ReadPosRankSum=-1.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,33:162:99:148,0,1211 chrX 715068 . G A 1619 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.231;DP=162;Dels=0.05;FS=8.490;HaplotypeScore=222.1287;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;MQRankSum=-0.188;QD=9.99;ReadPosRankSum=2.015;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:13,141:154:99:1652,112,0 chrX 715072 . G T 1386 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.422;DP=180;Dels=0.00;FS=55.153;HaplotypeScore=251.8935;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=0;MQRankSum=-0.030;QD=7.70;ReadPosRankSum=5.428;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:45,126:180:80:1419,80,0 chrX 715086 . A G 412.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.065;DP=209;Dels=0.00;FS=130.114;HaplotypeScore=225.6701;MLEAC=1;MLEAF=0.500;MQ=29.59;MQ0=0;MQRankSum=1.252;QD=1.97;ReadPosRankSum=0.593;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:128,81:209:99:442,0,1022 chrX 715087 . A G 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=206;Dels=0.00;FS=1.860;HaplotypeScore=224.8814;MLEAC=1;MLEAF=0.500;MQ=29.32;MQ0=0;MQRankSum=0.118;QD=0.23;ReadPosRankSum=-1.046;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:175,31:206:78:78,0,1391 chrX 715090 . T G 475.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;DP=203;Dels=0.00;FS=144.376;HaplotypeScore=309.8572;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=0;MQRankSum=1.914;QD=2.34;ReadPosRankSum=0.534;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,86:203:99:505,0,919 chrX 715095 . G A 1171.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.961;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=255.7004;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=0.953;QD=5.97;ReadPosRankSum=1.457;SB=-7.580e+02 GT:AD:DP:GQ:PL 0/1:53,143:196:99:1201,0,272 chrX 715096 . A C 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.222;DP=200;Dels=0.00;FS=33.112;HaplotypeScore=252.7163;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=0.350;QD=0.13;ReadPosRankSum=-3.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:171,29:200:56:56,0,1336 chrX 715099 . G T 1062.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;DP=199;Dels=0.00;FS=8.252;HaplotypeScore=262.9492;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=1.267;QD=5.34;ReadPosRankSum=-2.181;SB=-7.210e+02 GT:AD:DP:GQ:PL 0/1:63,110:199:99:1092,0,113 chrX 715108 . A T 413.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;DP=202;Dels=0.00;FS=98.220;HaplotypeScore=232.1747;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=0;MQRankSum=-0.130;QD=2.04;ReadPosRankSum=-4.430;SB=-2.900e+02 GT:AD:DP:GQ:PL 0/1:135,57:202:99:443,0,978 chrX 715111 . A T 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;DP=202;Dels=0.00;FS=22.890;HaplotypeScore=175.1065;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=-0.455;QD=0.17;ReadPosRankSum=1.171;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,23:202:64:64,0,1517 chrX 715114 . G A 589.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=194;Dels=0.02;FS=33.980;HaplotypeScore=332.2730;MLEAC=1;MLEAF=0.500;MQ=28.06;MQ0=0;MQRankSum=-1.274;QD=3.04;ReadPosRankSum=-2.021;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:123,65:191:99:619,0,972 chrX 715117 . T A 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=193;Dels=0.02;FS=25.556;HaplotypeScore=380.5605;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=0;MQRankSum=2.482;QD=0.22;ReadPosRankSum=2.781;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:165,24:190:73:73,0,1451 chrX 715122 . G A 369.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.201;DP=163;Dels=0.02;FS=21.668;HaplotypeScore=346.8623;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=0;MQRankSum=0.277;QD=2.26;ReadPosRankSum=0.106;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:115,45:160:99:399,0,944 chrX 715124 . G A 684.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.071;DP=158;Dels=0.00;FS=51.459;HaplotypeScore=327.5112;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=0;MQRankSum=-0.254;QD=4.33;ReadPosRankSum=0.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,69:158:99:714,0,555 chrX 715126 . A G 151.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=260.2528;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=0;MQRankSum=1.986;QD=1.06;ReadPosRankSum=3.192;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:80,48:143:99:181,0,777 chrX 715127 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.540;DP=141;Dels=0.00;FS=8.959;HaplotypeScore=256.5718;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.630;QD=0.35;ReadPosRankSum=4.482;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:120,17:141:79:79,0,964 chrX 715129 . C A 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;DP=135;Dels=0.00;FS=22.793;HaplotypeScore=259.9097;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=0;MQRankSum=1.122;QD=0.26;ReadPosRankSum=-1.601;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:86,43:135:65:65,0,896 chrX 715130 . G A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.319;DP=134;Dels=0.00;FS=8.951;HaplotypeScore=256.1668;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=0;MQRankSum=0.414;QD=0.29;ReadPosRankSum=4.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,17:134:69:69,0,960 chrX 715132 . T A 72.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;DP=129;Dels=0.00;FS=7.973;HaplotypeScore=232.9716;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=0;MQRankSum=0.069;QD=0.56;ReadPosRankSum=-1.182;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:66,46:129:99:102,0,739 chrX 715136 . G C 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.338;DP=126;Dels=0.00;FS=23.714;HaplotypeScore=179.8851;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.250;QD=0.60;ReadPosRankSum=0.597;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,43:126:99:105,0,831 chrX 715138 . A T 60.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;DP=125;Dels=0.00;FS=9.319;HaplotypeScore=147.1952;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.814;QD=0.48;ReadPosRankSum=1.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,17:125:90:90,0,804 chrX 715141 . A G 686.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=123;Dels=0.00;FS=1.149;HaplotypeScore=125.4213;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=-0.418;QD=5.58;ReadPosRankSum=4.654;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:58,65:123:99:716,0,190 chrX 715144 . T G 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;DP=115;Dels=0.00;FS=4.446;HaplotypeScore=105.1351;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=2.191;QD=0.51;ReadPosRankSum=-0.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,20:115:89:89,0,743 chrX 715156 . A C 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=88;Dels=0.00;FS=2.334;HaplotypeScore=94.9512;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=0.333;QD=0.83;ReadPosRankSum=-1.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,15:88:99:103,0,615 chrX 715159 . A G 490.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;DP=75;Dels=0.00;FS=10.048;HaplotypeScore=84.1790;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=0;MQRankSum=-0.143;QD=6.53;ReadPosRankSum=4.131;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:36,39:75:99:520,0,199 chrX 715162 . A G,T 620.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.646;DP=68;Dels=0.00;FS=26.652;HaplotypeScore=33.2559;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.25;MQ0=0;MQRankSum=0.700;QD=9.12;ReadPosRankSum=-0.635;SB=-1.401e+01 GT:AD:DP:GQ:PL 1/2:12,19,37:68:99:680,492,513,149,0,125 chrX 715168 . G A 610 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=53;Dels=0.00;FS=39.547;HaplotypeScore=37.2604;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;MQRankSum=-1.354;QD=11.51;ReadPosRankSum=-1.876;SB=-9.013e+00 GT:AD:DP:GQ:PL 1/1:8,45:53:31:643,31,0 chrX 715171 . T A 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;DP=49;Dels=0.00;FS=2.383;HaplotypeScore=32.4930;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=0;MQRankSum=0.132;QD=1.67;ReadPosRankSum=-3.434;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,9:49:99:112,0,404 chrX 715189 . G T 214.07 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=20;Dels=0.00;FS=2.702;HaplotypeScore=30.3358;MLEAC=1;MLEAF=0.500;MQ=27.54;MQ0=0;MQRankSum=-1.427;QD=10.70;ReadPosRankSum=-0.424;SB=-1.807e+01 GT:AD:DP:GQ:PL 0/1:8,12:20:15:244,0,15 chrX 715230 . G A 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=-0.731;QD=2.79;ReadPosRankSum=0.731;SB=-2.073e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:6:45,6,0 chrX 715234 . A T 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=14.10;SB=-4.255e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:12:103,12,0 chrX 715237 . C A 177.03 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=19.67;SB=-7.891e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:210,24,0 chrX 715240 . T A 186.03 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=13.29;SB=-1.089e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:219,24,0 chrX 715249 . A G 173.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=10.81;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:206,24,0 chrX 715501 . A G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=3.765;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.828;QD=17.80;ReadPosRankSum=1.531;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1297,141,0 chrX 715567 . G C 831 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=14.84;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:96:864,96,0 chrX 715574 . C T 898 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=15.48;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:931,102,0 chrX 715592 . A T 1035 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=14.58;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1068,117,0 chrX 716361 . A T 1964 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.66;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1997,213,0 chrX 716566 . C G 1382 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.93;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1415,156,0 chrX 716647 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.31;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1290,144,0 chrX 716861 . A T 1747 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.55;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1780,195,0 chrX 716901 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.68;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1711,183,0 chrX 717188 . C A 2037 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.41;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2070,222,0 chrX 717193 . C A 1816 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=15.39;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1849,204,0 chrX 717333 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.46;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:945,105,0 chrX 717336 . T A 929 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.59;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:962,105,0 chrX 717437 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.86;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2228,237,0 chrX 717517 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.32;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2354,255,0 chrX 717538 . C G 1838 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=18.38;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1871,213,0 chrX 717626 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.56;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2318,246,0 chrX 717742 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.67;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2187,243,0 chrX 717843 . G A 3364.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.77;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3364,372,0 chrX 717902 . G T 3121 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.13;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3154,348,0 chrX 717951 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.02;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2597,273,0 chrX 718314 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.70;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2775,294,0 chrX 718433 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.19;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1986,222,0 chrX 718475 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.00;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1776,192,0 chrX 718523 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=97;Dels=0.00;FS=3.443;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;MQRankSum=-0.820;QD=12.34;ReadPosRankSum=1.696;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:1230,138,0 chrX 718540 . A C 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-1.047;QD=11.03;ReadPosRankSum=1.466;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1048,117,0 chrX 718630 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=17.3465;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.16;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2375,270,0 chrX 718677 . G A 2923 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.02;SB=-1.815e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2956,315,0 chrX 718719 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.55;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2725,291,0 chrX 719114 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.2623;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.54;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2358,261,0 chrX 719589 . G A 3682.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.18;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3682,399,0 chrX 719842 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.76;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2296,246,0 chrX 720040 . T C 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=75;Dels=0.00;FS=2.937;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.937;QD=21.69;ReadPosRankSum=2.384;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1660,192,0 chrX 720361 . G C 2039 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.06;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2072,228,0 chrX 720598 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1516;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.65;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2037,222,0 chrX 720758 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.91;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2363,264,0 chrX 720763 . A T 2350 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.09;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2383,261,0 chrX 721180 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.56;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1122,120,0 chrX 721207 . T A 852 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.13;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:885,96,0 chrX 721243 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.368;QD=19.35;ReadPosRankSum=1.672;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1136,126,0 chrX 721347 . A T 920 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=15.08;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:953,105,0 chrX 721361 . A T 708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=52;Dels=0.00;FS=9.546;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.114;QD=13.62;ReadPosRankSum=2.253;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:81:741,81,0 chrX 721387 . A G 694 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.14;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:727,84,0 chrX 721412 . T C 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=12.472;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.621;QD=17.17;ReadPosRankSum=1.013;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:943,105,0 chrX 721486 . T C 404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.173;QD=10.10;ReadPosRankSum=1.646;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:48:437,48,0 chrX 721487 . G A 400 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=9.76;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:433,45,0 chrX 721520 . A G 447 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=11.46;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:480,54,0 chrX 721621 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=16.24;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:991,105,0 chrX 721626 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=7.1422;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=15.14;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:926,102,0 chrX 721671 . G T 708 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=10.11;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:84:741,84,0 chrX 721886 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.92;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1458,156,0 chrX 722092 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.96;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1548,168,0 chrX 722183 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.22;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1090,117,0 chrX 722324 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.94;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1196,132,0 chrX 722460 . T C 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.006;QD=23.27;ReadPosRankSum=1.621;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1476,162,0 chrX 722676 . A C 1497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.315;QD=22.68;ReadPosRankSum=1.680;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1530,171,0 chrX 723342 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.56;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1950,219,0 chrX 723399 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.24;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1585,180,0 chrX 723534 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.02;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1967,213,0 chrX 723691 . A G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.866;QD=21.52;ReadPosRankSum=1.691;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1841,204,0 chrX 723717 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.82;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1402,156,0 chrX 723909 . T A 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=85;Dels=0.00;FS=14.735;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.014;QD=17.29;ReadPosRankSum=2.276;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1503,162,0 chrX 723930 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=13.00;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1164,129,0 chrX 723948 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.59;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1632,174,0 chrX 724020 . T G 1772 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.60;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1805,198,0 chrX 724246 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.67;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1397,156,0 chrX 724337 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.07;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1613,174,0 chrX 724397 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=21.82;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1626,174,0 chrX 724519 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.98;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1076,114,0 chrX 724590 . T C 1623 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.04;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1656,183,0 chrX 724641 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.59;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1141,126,0 chrX 724642 . A G 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.112;QD=17.26;ReadPosRankSum=1.676;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1103,126,0 chrX 724657 . T C 949 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=16.36;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:982,108,0 chrX 724710 . A G 565 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=14.12;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:598,66,0 chrX 724711 . G C 573 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=14.32;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:606,69,0 chrX 724771 . A G 609 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=13.53;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:642,69,0 chrX 724788 . C T 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-1.205;QD=14.24;ReadPosRankSum=1.130;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:75:688,75,0 chrX 724819 . C T 733 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=39.6268;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=15.60;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:766,87,0 chrX 724820 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=39.6268;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=16.28;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:798,87,0 chrX 724901 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.01;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1736,180,0 chrX 724987 . A C 1362 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.18;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1395,156,0 chrX 725020 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2796;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.69;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1378,150,0 chrX 725123 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.84;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:950,105,0 chrX 725433 . C G 1039 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.09;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1072,120,0 chrX 725475 . A T 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.949;DP=69;Dels=0.00;FS=6.477;HaplotypeScore=11.2721;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.554;QD=15.84;ReadPosRankSum=1.234;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1126,110,0 chrX 725575 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.36;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1925,210,0 chrX 725705 . C T 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.319;QD=19.56;ReadPosRankSum=0.801;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1363,150,0 chrX 725736 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.04;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1135,120,0 chrX 725767 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=16.93;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1421,162,0 chrX 725776 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.591;QD=17.74;ReadPosRankSum=1.691;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1541,168,0 chrX 725808 . A T 1272 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.19;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1305,141,0 chrX 725966 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.47;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2064,219,0 chrX 726114 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.35;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2508,267,0 chrX 726270 . A T 1825 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1858,201,0 chrX 726314 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.40;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1930,207,0 chrX 726383 . T G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.219;QD=21.03;ReadPosRankSum=1.653;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1863,207,0 chrX 726401 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0610;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.00;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1692,183,0 chrX 726629 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.99;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2216,237,0 chrX 726713 . C T 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;DP=90;Dels=0.00;FS=4.179;HaplotypeScore=7.0471;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.576;QD=17.92;ReadPosRankSum=1.693;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1646,183,0 chrX 726809 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.56;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1715,192,0 chrX 726859 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.82;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1381,150,0 chrX 726915 . G T 1533 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.17;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1566,168,0 chrX 726974 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.65;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1786,192,0 chrX 727023 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.81;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1578,177,0 chrX 727098 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.49;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1590,183,0 chrX 727128 . T A 1725 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.04;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1758,189,0 chrX 727369 . T C 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=19.2411;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=1.000;QD=17.51;ReadPosRankSum=1.676;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2222,255,0 chrX 727467 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=17.63;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1778,189,0 chrX 727539 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.58;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2319,261,0 chrX 727776 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=8.34;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:1092,126,0 chrX 727794 . A G 735 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=6.23;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:87:768,87,0 chrX 727797 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=6.05;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:87:753,87,0 chrX 727815 . T C 806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=3.160;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;MQRankSum=-1.732;QD=6.83;ReadPosRankSum=1.673;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:93:839,93,0 chrX 727818 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=6.85;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:93:875,93,0 chrX 728001 . C T 2567 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7518;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.21;SB=-1.422e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2600,291,0 chrX 728049 . G A 2695 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=19.67;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2728,294,0 chrX 728235 . C T 2126 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.06;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2159,246,0 chrX 728247 . T C 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=4.559;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=1.143;QD=20.32;ReadPosRankSum=1.628;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2085,237,0 chrX 728336 . G A 2277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;DP=111;Dels=0.00;FS=3.021;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;MQRankSum=1.164;QD=20.51;ReadPosRankSum=1.918;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2310,258,0 chrX 728337 . T G 2283 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=20.20;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2316,261,0 chrX 728402 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=6.166;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=-0.628;QD=19.71;ReadPosRankSum=1.694;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1846,204,0 chrX 728412 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=17.70;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1679,180,0 chrX 728473 . A G 660 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=19.69;MQ0=6;MQRankSum=-1.732;QD=6.53;ReadPosRankSum=1.696;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:78:693,78,0 chrX 728718 . A G 523.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042;DP=72;Dels=0.00;FS=117.971;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=14;MQRankSum=0.335;QD=7.26;ReadPosRankSum=2.980;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,36:72:99:553,0,345 chrX 728732 . G A 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=56;Dels=0.00;FS=136.733;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.15;MQ0=6;MQRankSum=0.386;QD=4.59;ReadPosRankSum=-0.525;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,20:56:99:287,0,559 chrX 728733 . A G 252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832;DP=58;Dels=0.00;FS=136.733;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=8;MQRankSum=0.386;QD=4.34;ReadPosRankSum=-0.327;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,20:58:99:282,0,581 chrX 728835 . T G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=89;Dels=0.00;FS=31.556;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=10.22;MQ0=34;MQRankSum=-1.947;QD=0.27;ReadPosRankSum=2.176;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:2,77:89:6:55,6,0 chrX 729006 . A G 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=10.94;MQ0=31;MQRankSum=-0.290;QD=1.09;ReadPosRankSum=0.290;SB=2.16 GT:AD:DP:GQ:PL 1/1:2,39:43:9:79,9,0 chrX 729142 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=116;Dels=0.00;FS=2.695;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=9.69;MQ0=78;MQRankSum=-0.948;QD=0.21;ReadPosRankSum=2.321;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:2,114:116:6:56,6,0 chrX 729438 . T C 323.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.778;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=93;MQRankSum=0.227;QD=2.26;ReadPosRankSum=0.505;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:30,113:143:18:356,18,0 chrX 729494 . G A 149.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=8.84;MQ0=80;MQRankSum=-1.336;QD=1.25;ReadPosRankSum=0.457;SB=0.282 GT:AD:DP:GQ:PL 0/1:15,104:119:17:179,0,17 chrX 729540 . A G 49.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=6.99;MQ0=73;MQRankSum=-0.470;QD=0.52;ReadPosRankSum=0.705;SB=0.115 GT:AD:DP:GQ:PL 0/1:21,70:95:7:79,0,7 chrX 729640 . T G 224 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=7.58;MQ0=88;MQRankSum=0.809;QD=1.90;ReadPosRankSum=1.155;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:33,85:118:33:257,33,0 chrX 729658 . G A 200 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.18;MQ0=88;QD=1.80;SB=-1.302e-02 GT:AD:DP:GQ:PL 1/1:36,75:111:30:233,30,0 chrX 730795 . T C 288 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.041;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=7;MQRankSum=-0.347;QD=10.67;ReadPosRankSum=1.561;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:36:321,36,0 chrX 730848 . G A 1081 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.67;MQ0=16;QD=15.44;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1114,126,0 chrX 731182 . T C 155.06 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.11;MQ0=29;QD=3.52;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:21:188,21,0 chrX 736160 . C T 126.13 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.40;MQ0=23;QD=4.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:18:159,18,0 chrX 737538 . G T 81.51 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.21;MQ0=48;QD=1.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:12:114,12,0 chrX 737720 . T C 820 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=23;QD=12.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:96:853,96,0 chrX 737755 . C T 665 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.98;MQ0=28;QD=12.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:75:698,75,0 chrX 737980 . A G 2018 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=2;QD=20.80;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2051,237,0 chrX 738075 . G T 1263 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=3;QD=18.57;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1296,141,0 chrX 739973 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=7.08;MQ0=42;QD=0.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:6:56,6,0 chrX 740179 . C G 1049 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=3;QD=21.41;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1082,120,0 chrX 740193 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=3;QD=22.12;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:984,111,0 chrX 740238 . T C 138.13 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.73;MQ0=3;QD=13.81;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:18:171,18,0 chrX 740358 . T A 266 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.91;MQ0=18;QD=9.17;SB=-1.349e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:299,33,0 chrX 740363 . G A 272 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=16;QD=10.07;SB=-1.379e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:305,33,0 chrX 740373 . T C 316 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.56;MQ0=18;QD=9.29;SB=-1.649e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:39:349,39,0 chrX 740403 . T C 73.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.47;MQ0=21;QD=2.45;SB=-5.255e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:12:106,12,0 chrX 740493 . C T 53.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.55;MQ0=16;QD=2.70;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:86,9,0 chrX 740578 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.53;MQ0=16;QD=1.03;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,24:24:6:56,6,0 chrX 740754 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.03;MQ0=8;QD=2.34;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:6:57,6,0 chrX 740765 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.91;MQ0=10;QD=1.83;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:6:55,6,0 chrX 741212 . T C 148.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=10.85;MQ0=30;MQRankSum=-0.217;QD=3.22;ReadPosRankSum=1.519;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:21:181,21,0 chrX 741359 . G A 49.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.08;MQ0=24;QD=1.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:9:82,9,0 chrX 741616 . T C 595 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=12;QD=14.17;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:628,69,0 chrX 741815 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.67;MQ0=40;QD=0.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:6:49,6,0 chrX 744917 . A C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=4;MQRankSum=0.727;QD=2.23;ReadPosRankSum=0.727;SB=1.37 GT:AD:DP:GQ:PL 1/1:5,3:8:6:49,6,0 chrX 744929 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.751;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=13;MQRankSum=-0.751;QD=1.17;ReadPosRankSum=-0.751;SB=1.87 GT:AD:DP:GQ:PL 1/1:12,10:22:6:57,6,0 chrX 744930 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.290;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=14;MQRankSum=-1.159;QD=0.99;ReadPosRankSum=-1.448;SB=1.87 GT:AD:DP:GQ:PL 1/1:15,11:26:6:57,6,0 chrX 744994 . A G 358.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.37;MQ0=72;MQRankSum=5.305;QD=2.91;ReadPosRankSum=-0.569;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:87,35:123:27:391,27,0 chrX 744997 . T C 378.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.574;DP=142;Dels=0.05;FS=11.193;HaplotypeScore=25.8139;MLEAC=2;MLEAF=1.00;MQ=14.75;MQ0=75;MQRankSum=5.781;QD=2.66;ReadPosRankSum=1.693;SB=-2.347e-02 GT:AD:DP:GQ:PL 1/1:100,35:135:27:411,27,0 chrX 745017 . C T 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.587;DP=156;Dels=0.00;FS=21.693;HaplotypeScore=13.7933;MLEAC=1;MLEAF=0.500;MQ=13.00;MQ0=85;MQRankSum=5.680;QD=2.07;ReadPosRankSum=2.583;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:110,40:156:75:353,0,75 chrX 745022 . T C 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DP=154;Dels=0.00;FS=17.650;HaplotypeScore=43.5615;MLEAC=1;MLEAF=0.500;MQ=12.66;MQ0=85;MQRankSum=5.866;QD=1.91;ReadPosRankSum=1.513;SB=-8.884e-01 GT:AD:DP:GQ:PL 0/1:124,30:154:75:324,0,75 chrX 745028 . T C 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;DP=144;Dels=0.00;FS=13.087;HaplotypeScore=32.1513;MLEAC=1;MLEAF=0.500;MQ=12.36;MQ0=80;MQRankSum=5.482;QD=1.60;ReadPosRankSum=-0.804;SB=-5.655e-03 GT:AD:DP:GQ:PL 0/1:107,36:144:84:260,0,84 chrX 745061 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=104;Dels=0.00;FS=4.893;HaplotypeScore=10.8831;MLEAC=1;MLEAF=0.500;MQ=10.90;MQ0=58;MQRankSum=3.932;QD=0.24;ReadPosRankSum=-3.960;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:95,9:104:55:55,0,108 chrX 745071 . C T 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=16.4139;MLEAC=1;MLEAF=0.500;MQ=10.06;MQ0=49;MQRankSum=0.172;QD=0.24;ReadPosRankSum=2.712;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:64,23:87:30:51,0,30 chrX 745076 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.018;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.4401;MLEAC=1;MLEAF=0.500;MQ=9.74;MQ0=47;MQRankSum=-0.051;QD=0.25;ReadPosRankSum=2.582;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:70,14:84:30:51,0,30 chrX 745270 . A G 426 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=16;QD=8.04;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:51:459,51,0 chrX 745275 . C T 451.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.833;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.5768;MLEAC=2;MLEAF=1.00;MQ=22.47;MQ0=16;MQRankSum=4.630;QD=7.52;ReadPosRankSum=-3.704;SB=-2.375e-02 GT:AD:DP:GQ:PL 1/1:29,31:60:27:484,27,0 chrX 745361 . T C 663 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=27.4476;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=12;MQRankSum=0.844;QD=8.96;ReadPosRankSum=-0.021;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:81:696,81,0 chrX 745370 . A G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;DP=66;Dels=0.00;FS=22.148;HaplotypeScore=38.9236;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=12;MQRankSum=2.329;QD=0.80;ReadPosRankSum=-1.767;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,7:66:83:83,0,261 chrX 745372 . G A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=51.8748;MLEAC=1;MLEAF=0.500;MQ=19.02;MQ0=12;MQRankSum=2.071;QD=1.14;ReadPosRankSum=-1.057;SB=-2.700e+01 GT:AD:DP:GQ:PL 0/1:50,14:64:99:105,0,217 chrX 745384 . A T 79.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;DP=50;Dels=0.00;FS=3.218;HaplotypeScore=28.9458;MLEAC=1;MLEAF=0.500;MQ=14.86;MQ0=13;MQRankSum=-0.282;QD=1.60;ReadPosRankSum=1.877;SB=-4.234e+01 GT:AD:DP:GQ:PL 0/1:14,36:50:4:109,0,4 chrX 745393 . C G 55.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=37.8403;MLEAC=1;MLEAF=0.500;MQ=14.80;MQ0=10;MQRankSum=-0.021;QD=1.38;ReadPosRankSum=2.096;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:22,18:40:30:85,0,30 chrX 745401 . C T 74.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=25.4602;MLEAC=2;MLEAF=1.00;MQ=14.31;MQ0=10;QD=2.33;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,31:32:12:107,12,0 chrX 745402 . A G 39.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=31;Dels=0.00;FS=29.863;HaplotypeScore=23.7557;MLEAC=1;MLEAF=0.500;MQ=14.38;MQ0=10;MQRankSum=2.188;QD=1.27;ReadPosRankSum=0.619;SB=-2.175e-01 GT:AD:DP:GQ:PL 0/1:26,5:31:10:69,0,10 chrX 745413 . C G 70.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.634;DP=29;Dels=0.00;FS=1.833;HaplotypeScore=10.0164;MLEAC=2;MLEAF=1.00;MQ=15.72;MQ0=8;MQRankSum=-0.933;QD=2.43;ReadPosRankSum=-0.858;SB=-1.951e+01 GT:AD:DP:GQ:PL 1/1:10,19:29:12:103,12,0 chrX 745466 . T C 14.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=9.1114;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=0;MQRankSum=0.639;QD=1.01;ReadPosRankSum=-0.091;SB=-4.080e-02 GT:AD:DP:GQ:PL 0/1:12,2:14:18:44,0,18 chrX 745544 . A G 23.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=6.368;HaplotypeScore=3.6202;MLEAC=2;MLEAF=1.00;MQ=26.66;MQ0=0;MQRankSum=-0.668;QD=1.83;ReadPosRankSum=1.470;SB=-5.426e+01 GT:AD:DP:GQ:PL 1/1:1,12:13:6:55,6,0 chrX 745547 . G T 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.8315;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;MQRankSum=0.869;QD=1.73;ReadPosRankSum=-0.290;SB=-5.626e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:6:52,6,0 chrX 745548 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.290;SB=-5.226e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:6:51,6,0 chrXI 116 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=2.97;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:55,6,0 chrXI 155 . C T 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.9406;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=4.11;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:60,6,0 chrXI 160 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=-0.742;QD=3.26;ReadPosRankSum=0.742;SB=1.65 GT:AD:DP:GQ:PL 1/1:1,6:7:6:54,6,0 chrXI 347 . A G 147.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.9662;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=2;MQRankSum=0.158;QD=8.17;ReadPosRankSum=1.423;SB=-2.387e+01 GT:AD:DP:GQ:PL 1/1:1,12:18:21:180,21,0 chrXI 356 . T C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;DP=29;Dels=0.00;FS=19.248;HaplotypeScore=32.9468;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=2;MQRankSum=0.504;QD=1.21;ReadPosRankSum=-2.841;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,8:29:65:65,0,289 chrXI 363 . C T 274.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=30;Dels=0.00;FS=13.141;HaplotypeScore=10.1772;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=0.473;QD=9.13;ReadPosRankSum=0.516;SB=-1.239e+02 GT:AD:DP:GQ:PL 0/1:11,19:30:99:304,0,146 chrXI 409 . T C 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=40;Dels=0.00;FS=10.951;HaplotypeScore=10.2106;MLEAC=1;MLEAF=0.500;MQ=27.57;MQ0=0;MQRankSum=0.795;QD=1.78;ReadPosRankSum=2.857;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,8:40:99:101,0,446 chrXI 437 . G A 115.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=18.2105;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=1;MQRankSum=-0.313;QD=2.45;ReadPosRankSum=-3.590;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:35,12:47:99:145,0,655 chrXI 438 . T C 386.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;DP=47;Dels=0.00;FS=1.453;HaplotypeScore=18.2105;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=1;MQRankSum=-1.336;QD=8.21;ReadPosRankSum=-5.037;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:20,26:47:99:416,0,368 chrXI 466 . C T 349.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DP=26;Dels=0.00;FS=18.388;HaplotypeScore=5.7914;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=2;MQRankSum=0.635;QD=13.42;ReadPosRankSum=-1.334;SB=-1.237e+01 GT:AD:DP:GQ:PL 0/1:9,17:26:52:379,0,52 chrXI 490 . C T 450.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.589;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=2;MQRankSum=-0.068;QD=13.64;ReadPosRankSum=1.512;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:8,25:33:93:480,0,93 chrXI 492 . T C 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=2;MQRankSum=-0.736;QD=1.41;ReadPosRankSum=-0.147;SB=-8.007e+00 GT:AD:DP:GQ:PL 0/1:25,7:32:75:75,0,478 chrXI 509 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DP=14;Dels=0.00;FS=10.561;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=2;MQRankSum=-1.034;QD=1.86;ReadPosRankSum=-2.520;SB=-6.938e+00 GT:AD:DP:GQ:PL 0/1:7,6:14:56:56,0,133 chrXI 546 . T G 121.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.06;MQ0=1;QD=9.32;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:154,18,0 chrXI 566 . G A 78.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=0;MQRankSum=2.219;QD=8.72;ReadPosRankSum=-2.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,4:9:12:111,12,0 chrXI 568 . T C 66.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=0;QD=7.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:12:99,12,0 chrXI 667 . G A 108.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.9765;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=3;MQRankSum=-0.869;QD=7.22;ReadPosRankSum=-1.448;SB=-4.785e+01 GT:AD:DP:GQ:PL 1/1:4,11:15:15:141,15,0 chrXI 673 . A G 98.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.9662;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=3;MQRankSum=0.668;QD=6.14;ReadPosRankSum=-1.470;SB=-4.929e+01 GT:AD:DP:GQ:PL 1/1:1,15:16:15:131,15,0 chrXI 679 . C T 70.14 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;DP=15;Dels=0.00;FS=11.553;HaplotypeScore=3.9729;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=2;MQRankSum=0.935;QD=4.68;ReadPosRankSum=1.656;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:9,6:15:12:100,0,12 chrXI 680 . C T 59.11 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=16;Dels=0.00;FS=10.710;HaplotypeScore=5.9643;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=2;MQRankSum=0.581;QD=3.69;ReadPosRankSum=1.872;SB=-1.140e-01 GT:AD:DP:GQ:PL 0/1:10,6:16:13:89,0,13 chrXI 687 . A G 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=7.9529;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=2;MQRankSum=1.186;QD=3.88;ReadPosRankSum=1.532;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:7,6:16:61:92,0,61 chrXI 689 . T A 166.08 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=8.9445;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=2;QD=10.38;SB=1.91 GT:AD:DP:GQ:PL 1/1:0,13:16:21:199,21,0 chrXI 704 . T C 184.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.8477;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=2;QD=9.69;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:217,24,0 chrXI 715 . C T 297 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.374;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=10.4888;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=2;MQRankSum=0.540;QD=9.28;ReadPosRankSum=-0.707;SB=-7.394e-03 GT:AD:DP:GQ:PL 1/1:4,28:32:39:330,39,0 chrXI 724 . T G 196.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=29.0250;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=0.121;QD=6.13;ReadPosRankSum=-0.169;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:6,26:32:68:226,0,68 chrXI 732 . A T 97.52 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=15.3305;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=0;MQRankSum=0.831;QD=3.05;ReadPosRankSum=1.662;SB=-5.203e-01 GT:AD:DP:GQ:PL 0/1:17,15:32:6:127,0,6 chrXI 733 . C A 112.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.386;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=13.7531;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;MQRankSum=1.637;QD=3.75;ReadPosRankSum=1.506;SB=-4.195e-01 GT:AD:DP:GQ:PL 0/1:14,15:30:7:142,0,7 chrXI 735 . C A 128.18 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=19.3522;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;QD=4.27;SB=7.81 GT:AD:DP:GQ:PL 1/1:0,15:30:18:161,18,0 chrXI 748 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.7479;MLEAC=1;MLEAF=0.500;MQ=27.67;MQ0=0;MQRankSum=-0.845;QD=1.31;ReadPosRankSum=-2.776;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,6:32:72:72,0,198 chrXI 755 . T C 242 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=14.771;HaplotypeScore=7.7399;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;MQRankSum=1.271;QD=8.07;ReadPosRankSum=1.617;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:1,29:30:33:275,33,0 chrXI 774 . T C 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;DP=35;Dels=0.00;FS=19.341;HaplotypeScore=45.8920;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=2;MQRankSum=2.745;QD=0.86;ReadPosRankSum=3.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,13:35:60:60,0,210 chrXI 775 . C G 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DP=35;Dels=0.00;FS=23.592;HaplotypeScore=45.8920;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=2;MQRankSum=2.637;QD=1.00;ReadPosRankSum=3.181;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,13:35:65:65,0,196 chrXI 778 . C T 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.202;DP=36;Dels=0.00;FS=40.629;HaplotypeScore=54.2213;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=2;MQRankSum=3.858;QD=3.44;ReadPosRankSum=3.134;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:19,17:36:99:154,0,140 chrXI 780 . C T 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;DP=38;Dels=0.00;FS=48.938;HaplotypeScore=20.2247;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=2;MQRankSum=-3.929;QD=2.92;ReadPosRankSum=-3.232;SB=-5.488e+01 GT:AD:DP:GQ:PL 0/1:17,21:38:99:141,0,151 chrXI 786 . C T 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;DP=38;Dels=0.00;FS=31.409;HaplotypeScore=12.4672;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=2;MQRankSum=3.162;QD=0.68;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,13:38:56:56,0,256 chrXI 811 . G A 117.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=16;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.35;MQ0=2;MQRankSum=-1.736;QD=7.34;ReadPosRankSum=-1.488;SB=-4.435e+00 GT:AD:DP:GQ:PL 0/1:1,15:16:1:146,0,1 chrXI 818 . T A 140.03 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.35;MQ0=2;QD=8.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:16:24:173,24,0 chrXI 844 . A T 117.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DP=19;Dels=0.00;FS=27.482;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=3;MQRankSum=-1.749;QD=6.17;ReadPosRankSum=1.345;SB=-4.173e+00 GT:AD:DP:GQ:PL 0/1:3,16:19:2:146,0,2 chrXI 882 . T C 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=1;MQRankSum=0.572;QD=10.70;ReadPosRankSum=0.000;SB=4.19 GT:AD:DP:GQ:PL 1/1:3,6:9:15:129,15,0 chrXI 887 . A G 99.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.97;MQ0=1;QD=9.02;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:132,15,0 chrXI 1056 . G C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrXI 1067 . T C 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=4.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrXI 1099 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.36;MQ0=0;QD=2.01;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrXI 1106 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.45;MQ0=0;QD=1.72;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXI 1107 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.45;MQ0=0;QD=1.72;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrXI 1212 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=13.74;MQ0=9;QD=0.86;SB=-2.280e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:6:51,6,0 chrXI 1241 . C T 48.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.985;DP=25;Dels=0.00;FS=9.031;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=15.91;MQ0=9;MQRankSum=0.714;QD=1.96;ReadPosRankSum=0.873;SB=-8.463e-01 GT:AD:DP:GQ:PL 1/1:7,18:25:9:81,9,0 chrXI 1284 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.71;MQ0=2;QD=1.56;SB=-2.351e+01 GT:AD:DP:GQ:PL 1/1:0,13:14:6:53,6,0 chrXI 1425 . T A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=20.36;MQ0=20;MQRankSum=-1.181;QD=0.35;ReadPosRankSum=0.520;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,4:41:44:44,0,182 chrXI 1436 . A G 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=24;MQRankSum=0.368;QD=2.12;ReadPosRankSum=0.425;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,16:50:99:136,0,265 chrXI 1512 . G A 236.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=10.7510;MLEAC=1;MLEAF=0.500;MQ=19.41;MQ0=27;MQRankSum=1.006;QD=4.72;ReadPosRankSum=-0.708;SB=-6.434e-03 GT:AD:DP:GQ:PL 0/1:27,23:50:62:266,0,62 chrXI 1545 . T C 34.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=10.90;MQ0=24;MQRankSum=1.368;QD=1.06;ReadPosRankSum=0.922;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,7:32:17:64,0,17 chrXI 1551 . G A 14.21 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DP=30;Dels=0.00;FS=3.136;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=10.07;MQ0=22;MQRankSum=0.922;QD=0.47;ReadPosRankSum=1.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:18:44,0,18 chrXI 1602 . A G 15.15 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=12;MQRankSum=2.477;QD=0.52;ReadPosRankSum=-2.583;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:24,5:29:23:45,0,23 chrXI 1603 . C G 12.32 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=16.87;MQ0=12;MQRankSum=2.372;QD=0.42;ReadPosRankSum=-2.477;SB=-6.072e-02 GT:AD:DP:GQ:PL 0/1:23,5:29:16:42,0,16 chrXI 1660 . C T 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.539;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=29.10;MQ0=2;MQRankSum=2.039;QD=4.58;ReadPosRankSum=-3.837;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,13:31:99:172,0,155 chrXI 1679 . T C 410.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=30.95;MQ0=3;MQRankSum=0.982;QD=9.54;ReadPosRankSum=1.227;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:6,37:43:46:440,0,46 chrXI 1773 . G T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;DP=47;Dels=0.00;FS=1.970;HaplotypeScore=10.3495;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=10;MQRankSum=0.109;QD=1.13;ReadPosRankSum=0.853;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:39,6:47:83:83,0,473 chrXI 1777 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=42;Dels=0.00;FS=2.294;HaplotypeScore=6.2882;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=10;MQRankSum=0.555;QD=0.86;ReadPosRankSum=0.410;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:36,6:42:66:66,0,372 chrXI 1813 . A G 95.26 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=10;QD=5.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:15:128,15,0 chrXI 1867 . C T 78.51 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.00;MQ0=0;QD=13.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:12:111,12,0 chrXI 1900 . A G 76.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=2;QD=9.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,6:8:12:109,12,0 chrXI 2050 . G A 76.51 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=1;QD=8.50;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:1,8:9:12:109,12,0 chrXI 2059 . A G 72.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.72;MQ0=2;QD=5.58;SB=-1.273e+02 GT:AD:DP:GQ:PL 1/1:2,11:13:12:105,12,0 chrXI 2071 . G A 183.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=2;QD=10.17;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:2,11:18:24:216,24,0 chrXI 2080 . A G 149.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=2;QD=7.45;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:2,18:20:21:182,21,0 chrXI 2096 . G T 188.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=3;QD=8.55;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:3,19:22:24:221,24,0 chrXI 2100 . A C 181.03 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=8.6726;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=4;QD=7.87;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:4,19:23:24:214,24,0 chrXI 2116 . T G 179.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.653;DP=26;Dels=0.00;FS=31.239;HaplotypeScore=36.7737;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=5;MQRankSum=2.060;QD=6.89;ReadPosRankSum=-0.352;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:8,18:26:24:212,24,0 chrXI 2123 . G C 50.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=24;Dels=0.00;FS=20.569;HaplotypeScore=77.4426;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=4;MQRankSum=2.182;QD=2.12;ReadPosRankSum=0.960;SB=2.54 GT:AD:DP:GQ:PL 1/1:9,15:24:9:83,9,0 chrXI 2146 . G A 69.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=29.9899;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=4;MQRankSum=-0.083;QD=2.77;ReadPosRankSum=-0.908;SB=-4.808e+01 GT:AD:DP:GQ:PL 0/1:4,21:25:12:99,0,12 chrXI 2158 . A G 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9765;MLEAC=1;MLEAF=0.500;MQ=25.08;MQ0=4;MQRankSum=1.030;QD=2.24;ReadPosRankSum=-1.883;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:12,13:25:62:86,0,62 chrXI 2161 . G A 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DP=27;Dels=0.00;FS=3.203;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=4;MQRankSum=2.000;QD=2.11;ReadPosRankSum=-2.370;SB=-6.523e-03 GT:AD:DP:GQ:PL 0/1:15,12:27:58:87,0,58 chrXI 2183 . A G 97.26 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.8047;MLEAC=2;MLEAF=1.00;MQ=21.41;MQ0=5;QD=4.23;SB=-2.424e+01 GT:AD:DP:GQ:PL 1/1:3,14:23:15:130,15,0 chrXI 2198 . C G 97.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.883;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.7571;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=2;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.883;SB=-2.424e+01 GT:AD:DP:GQ:PL 1/1:3,15:18:15:130,15,0 chrXI 2239 . A G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.82;MQ0=15;QD=1.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,5:19:6:54,6,0 chrXI 2254 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.54;MQ0=16;QD=1.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,4:19:6:53,6,0 chrXI 2369 . C T 101.98 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=5;MQRankSum=1.981;QD=4.64;ReadPosRankSum=-1.415;SB=-5.885e+01 GT:AD:DP:GQ:PL 0/1:7,15:22:3:131,0,3 chrXI 2399 . T C 357.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;DP=47;Dels=0.00;FS=3.489;HaplotypeScore=3.5438;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=7;MQRankSum=-0.051;QD=7.60;ReadPosRankSum=1.540;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:5,42:47:27:390,27,0 chrXI 2400 . C T 284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;DP=47;Dels=0.00;FS=1.831;HaplotypeScore=3.5438;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=7;MQRankSum=0.141;QD=6.04;ReadPosRankSum=2.577;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:12,35:47:26:314,0,26 chrXI 2428 . C G 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;DP=55;Dels=0.00;FS=19.978;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=5;MQRankSum=0.767;QD=5.05;ReadPosRankSum=2.049;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:29,26:55:99:308,0,260 chrXI 2483 . T C 362 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=8;QD=11.31;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:5,27:32:45:395,45,0 chrXI 2492 . A G 369 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=8;QD=11.90;SB=-6.790e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:45:402,45,0 chrXI 2655 . C G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.10;MQ0=8;QD=1.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,5:11:6:49,6,0 chrXI 2659 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.10;MQ0=8;QD=1.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,5:11:6:49,6,0 chrXI 2688 . C G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=2.8891;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=1;QD=2.55;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:49,6,0 chrXI 2694 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.720;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=1;MQRankSum=0.720;QD=1.99;ReadPosRankSum=0.720;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:6:45,6,0 chrXI 2722 . C G 126.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DP=19;Dels=0.00;FS=7.533;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=2;MQRankSum=-0.919;QD=6.64;ReadPosRankSum=-1.735;SB=-2.007e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:18:159,18,0 chrXI 2734 . C T 156.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=21;Dels=0.00;FS=5.254;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=2;MQRankSum=0.332;QD=7.43;ReadPosRankSum=-0.066;SB=-4.604e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:21:189,21,0 chrXI 2796 . A T 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;DP=50;Dels=0.00;FS=3.029;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=6;MQRankSum=1.587;QD=3.76;ReadPosRankSum=0.616;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,20:50:99:218,0,118 chrXI 3136 . T C 888 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.222;QD=22.20;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,38:40:99:921,105,0 chrXI 3292 . C A 939 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.92;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:972,108,0 chrXI 3297 . G C 1017 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.49;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1050,117,0 chrXI 3333 . A G 709 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.41;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:742,84,0 chrXI 3393 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.22;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1347,144,0 chrXI 3528 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.08;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1273,147,0 chrXI 3898 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.40;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1638,183,0 chrXI 3968 . A T 2005 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.05;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2038,225,0 chrXI 4432 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.85;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1522,162,0 chrXI 4433 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.00;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1533,162,0 chrXI 4534 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.72;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1119,120,0 chrXI 5087 . T G 1363 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1396,153,0 chrXI 5655 . T A 2481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.252;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.311;QD=20.85;ReadPosRankSum=0.844;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2514,246,0 chrXI 5928 . G A 3023 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.98;SB=-1.554e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:3056,330,0 chrXI 6062 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.99;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2012,219,0 chrXI 6186 . G C 1234 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.28;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1267,144,0 chrXI 6332 . G T 1475 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.01;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1508,159,0 chrXI 6500 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.99;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2027,231,0 chrXI 6508 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.65;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2036,219,0 chrXI 6589 . A G 1690 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.36;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1723,198,0 chrXI 7040 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.25;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2371,264,0 chrXI 7552 . A T 514 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.13;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:547,60,0 chrXI 7571 . T G 668 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=17.58;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:78:701,78,0 chrXI 7704 . A G 942 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.46;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:975,108,0 chrXI 8317 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.12;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1532,174,0 chrXI 8354 . G T 1135 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.1287;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=14.37;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1168,126,0 chrXI 8579 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.08;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1711,180,0 chrXI 8910 . C G 1222 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1255,141,0 chrXI 9055 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.73;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1513,171,0 chrXI 9915 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.30;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1384,150,0 chrXI 10393 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.69;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1771,198,0 chrXI 10540 . T C 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9254;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.563;QD=18.94;ReadPosRankSum=1.690;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1586,180,0 chrXI 10550 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.32;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1617,174,0 chrXI 10762 . A G 2387 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.52;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2420,267,0 chrXI 10969 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=115;Dels=0.00;FS=3.629;HaplotypeScore=7.5934;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.966;QD=19.65;ReadPosRankSum=1.671;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2293,261,0 chrXI 11478 . G A 2329 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7829;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.61;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2362,258,0 chrXI 11792 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.47;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1855,207,0 chrXI 12163 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.73;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1494,162,0 chrXI 12483 . A C 1551 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1584,174,0 chrXI 12708 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1615,177,0 chrXI 13039 . C G 1904 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.92;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1937,219,0 chrXI 13068 . G A 2129 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.29;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2162,228,0 chrXI 13310 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4708;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.94;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1792,198,0 chrXI 13378 . A G 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.102;QD=21.69;ReadPosRankSum=1.662;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2180,240,0 chrXI 13635 . A T 1352 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.88;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1385,150,0 chrXI 13729 . T G 1581 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.05;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1614,180,0 chrXI 13849 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.37;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1926,210,0 chrXI 13945 . C A 1936 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.27;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1969,210,0 chrXI 13973 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.51;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1736,192,0 chrXI 14729 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.38;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1555,174,0 chrXI 16612 . T G 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=4.472;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.287;QD=20.28;ReadPosRankSum=1.683;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1473,162,0 chrXI 16671 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.644;DP=89;Dels=0.00;FS=12.549;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.739;QD=20.48;ReadPosRankSum=3.697;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:5,84:89:99:1856,207,0 chrXI 16901 . G T 1684 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1717,183,0 chrXI 16954 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1265,141,0 chrXI 16988 . A C 1510 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.21;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1543,177,0 chrXI 17206 . T A 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.906;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.028;QD=21.37;ReadPosRankSum=1.674;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1294,141,0 chrXI 17400 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.02;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1612,174,0 chrXI 17657 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.82;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2407,261,0 chrXI 18091 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.72;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2169,234,0 chrXI 18181 . C T 888 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.30;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:921,102,0 chrXI 18424 . G T 2335 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.03;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2368,258,0 chrXI 18574 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.53;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1139,129,0 chrXI 18639 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.20;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1541,162,0 chrXI 18968 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.85;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1140,126,0 chrXI 19023 . A G 755 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=13.73;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:788,93,0 chrXI 19024 . G A 941 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=17.11;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:974,108,0 chrXI 19032 . C T 929 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=15.75;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:962,108,0 chrXI 19335 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.24;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1613,180,0 chrXI 19367 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=22.28;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1325,141,0 chrXI 19401 . A C 699 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=15.89;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:732,84,0 chrXI 19443 . C T 798 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=15.06;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:831,90,0 chrXI 19445 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=15.32;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:845,90,0 chrXI 19459 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.36;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:823,90,0 chrXI 19491 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=17.82;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:942,99,0 chrXI 19503 . A G 826 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=15.02;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:859,96,0 chrXI 19521 . C T 776 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=15.84;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:84:809,84,0 chrXI 19529 . C T 581 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=12.10;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:69:614,69,0 chrXI 19537 . C G 646 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=13.18;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:679,75,0 chrXI 19563 . C T 665 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=14.15;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:698,75,0 chrXI 19617 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.65;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:972,108,0 chrXI 19657 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.88;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:57:99:995,111,0 chrXI 20142 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=15.69;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1037,117,0 chrXI 20209 . G A 532 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=6.4759;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=7.49;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:60:565,60,0 chrXI 20233 . G A 609 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=9.23;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:72:642,72,0 chrXI 20243 . A G 678 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=10.59;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:81:711,81,0 chrXI 20275 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=13.19;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:943,105,0 chrXI 20302 . C G 987 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5654;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=14.30;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1020,114,0 chrXI 20424 . A G 2334 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.66;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2367,267,0 chrXI 20616 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.89;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2420,276,0 chrXI 20761 . T C 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.6538;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.650;QD=18.73;ReadPosRankSum=1.677;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2393,267,0 chrXI 20824 . A T 2243 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.85;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2276,249,0 chrXI 21193 . C T 1206 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.05;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.27;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1239,135,0 chrXI 21250 . A T 181.03 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=39.7171;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=3.12;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:24:214,24,0 chrXI 21328 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.64;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:916,99,0 chrXI 21391 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.77;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1012,111,0 chrXI 21546 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.93;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1205,135,0 chrXI 21568 . T C 922 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.04;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:955,108,0 chrXI 21722 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.85;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1125,126,0 chrXI 21793 . G T 1238 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.34;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1271,138,0 chrXI 22070 . A T 38.97 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=0.93;SB=-4.798e+01 GT:AD:DP:GQ:PL 1/1:5,37:42:9:71,9,0 chrXI 22075 . G T 113.26 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=2.46;SB=-1.623e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:15:146,15,0 chrXI 22088 . C T 286 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=5.96;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:319,33,0 chrXI 22343 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.64;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1050,111,0 chrXI 22482 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.08;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1667,186,0 chrXI 22569 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.18;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1433,156,0 chrXI 23241 . A C 1421 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.92;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1454,165,0 chrXI 23463 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9510;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.43;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2152,246,0 chrXI 24181 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.947;DP=133;Dels=0.00;FS=2.591;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.008;QD=19.15;ReadPosRankSum=2.887;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:3,130:133:99:2580,294,0 chrXI 24246 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.98;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2065,231,0 chrXI 24374 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.30;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2293,243,0 chrXI 24503 . T C 2017 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1170;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.79;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2050,234,0 chrXI 24542 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.56;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1343,150,0 chrXI 24544 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.18;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1369,147,0 chrXI 24595 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9990;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=15.26;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1284,147,0 chrXI 24639 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.64;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1663,177,0 chrXI 24924 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.866;QD=20.59;ReadPosRankSum=1.670;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1186,135,0 chrXI 25153 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.27;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1347,153,0 chrXI 25154 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=23.25;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1428,150,0 chrXI 25337 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.54;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1864,201,0 chrXI 25386 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.96;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1732,195,0 chrXI 25577 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.68;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1470,159,0 chrXI 25599 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.55;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1349,150,0 chrXI 25610 . T G 1148 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=16.17;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1181,132,0 chrXI 25622 . G C 1426 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.18;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1459,162,0 chrXI 25673 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.7501;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.44;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1724,189,0 chrXI 25946 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.86;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1334,153,0 chrXI 26057 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.08;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1993,222,0 chrXI 26289 . T C 2451 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.12;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2484,279,0 chrXI 26389 . T C 2722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.623;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-1.678;QD=21.43;ReadPosRankSum=-1.105;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2755,287,0 chrXI 26450 . T G 1877 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.55;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1910,213,0 chrXI 26461 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.52;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:96:99:1715,189,0 chrXI 26562 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.88;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1663,183,0 chrXI 26709 . C A 1439 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.59;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1472,156,0 chrXI 26749 . A G 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=7.056;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.417;QD=22.36;ReadPosRankSum=1.627;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1509,177,0 chrXI 26810 . A T 763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=5.384;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.821;QD=20.08;ReadPosRankSum=1.641;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:90:796,90,0 chrXI 27091 . A G 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.023;QD=18.23;ReadPosRankSum=1.690;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1564,177,0 chrXI 27293 . A T 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=71;Dels=0.00;FS=2.624;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.309;QD=16.15;ReadPosRankSum=2.722;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1180,126,0 chrXI 27322 . T G 1536 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.21;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1569,174,0 chrXI 27376 . G A 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0802;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.929;QD=19.65;ReadPosRankSum=-0.253;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1644,180,0 chrXI 27541 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1785,195,0 chrXI 27643 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.34;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1116,126,0 chrXI 28033 . T C 1689 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.11;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1722,195,0 chrXI 28300 . G C 1442 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1475,165,0 chrXI 29242 . T C 1446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.732;QD=18.30;ReadPosRankSum=1.688;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1479,162,0 chrXI 29807 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3632;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.84;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:81:99:1397,156,0 chrXI 29986 . A G 1284 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.76;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1317,144,0 chrXI 30016 . A G 950 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.96;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:983,111,0 chrXI 30025 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=17.62;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:949,102,0 chrXI 30028 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=15.49;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:854,90,0 chrXI 30571 . C A 1864 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.26;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1897,207,0 chrXI 30574 . C A 1891 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.49;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1924,210,0 chrXI 30716 . T G 2540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=4.374;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.341;QD=21.90;ReadPosRankSum=1.702;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2573,285,0 chrXI 30771 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.19;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2025,216,0 chrXI 30923 . A C 1465 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.23;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1498,168,0 chrXI 31460 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.55;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1595,183,0 chrXI 31754 . T C 1485 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0523;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.56;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1518,168,0 chrXI 31804 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=16.64;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1614,177,0 chrXI 31810 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.141;DP=95;Dels=0.00;FS=9.073;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.417;QD=16.42;ReadPosRankSum=3.345;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1593,180,0 chrXI 31850 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.69;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1569,168,0 chrXI 32054 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.45;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1251,135,0 chrXI 32204 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.94;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1457,165,0 chrXI 32212 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.86;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1760,192,0 chrXI 32395 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.39;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1460,165,0 chrXI 32494 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.1643;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.06;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1417,159,0 chrXI 32644 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=17.39;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1424,159,0 chrXI 32647 . T A 1508 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.62;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1541,168,0 chrXI 32704 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=16.70;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1569,183,0 chrXI 32749 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=18.41;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1395,156,0 chrXI 32862 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.64;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1338,153,0 chrXI 32888 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.14;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1557,165,0 chrXI 32956 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=17.45;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1726,189,0 chrXI 33016 . A G 2116 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.06;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2149,246,0 chrXI 33673 . G A 2809 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.78;SB=-1.611e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2842,312,0 chrXI 33790 . G A 2449 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.30;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2482,267,0 chrXI 34159 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7921;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.77;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2485,279,0 chrXI 34378 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.96;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2031,213,0 chrXI 34404 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.69;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1715,192,0 chrXI 34444 . C G 1658 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.84;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1691,189,0 chrXI 34686 . G C 1182 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.03;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1215,135,0 chrXI 35136 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.07;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1192,132,0 chrXI 35608 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.34;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1904,204,0 chrXI 36243 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=14.99;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1052,120,0 chrXI 36249 . C G 1130 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=15.69;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1163,132,0 chrXI 36393 . G A 1204 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1237,132,0 chrXI 36454 . C T 1041 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1074,123,0 chrXI 36537 . C T 424 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.19;SB=-6.584e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:457,51,0 chrXI 36695 . T C 1359 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.470;QD=21.57;ReadPosRankSum=2.372;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1392,159,0 chrXI 36697 . A G 1375 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1408,165,0 chrXI 36777 . A T 961 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=25.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:99:994,108,0 chrXI 36810 . G A 711 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:87:744,87,0 chrXI 36900 . A G 390 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=16.96;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:423,48,0 chrXI 36921 . A T 804 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.16;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:837,90,0 chrXI 37146 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.52;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1841,198,0 chrXI 37157 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.33;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1639,174,0 chrXI 37308 . T A 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.956;QD=19.80;ReadPosRankSum=1.673;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1201,129,0 chrXI 37524 . T C 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-0.204;QD=16.95;ReadPosRankSum=1.698;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1762,201,0 chrXI 37530 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=15.19;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1719,192,0 chrXI 37551 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=15.33;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1719,195,0 chrXI 37578 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;QD=14.51;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1557,171,0 chrXI 37590 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=14.62;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1451,156,0 chrXI 37740 . T G 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.001;QD=21.75;ReadPosRankSum=1.700;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2447,273,0 chrXI 39112 . G C 2259 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.72;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2292,252,0 chrXI 39184 . C G 2290 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.23;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2323,270,0 chrXI 39867 . C A 1304 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.39;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1337,147,0 chrXI 40659 . A G 2492 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.29;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2525,282,0 chrXI 40989 . T C 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=79;Dels=0.00;FS=7.594;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.568;QD=15.77;ReadPosRankSum=2.385;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:2,74:79:99:1279,147,0 chrXI 40998 . C G 1169 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=16.01;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1202,138,0 chrXI 41010 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=14.06;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:975,108,0 chrXI 41369 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=20.58;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1494,165,0 chrXI 41373 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.59;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1463,162,0 chrXI 41391 . T C 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=3.040;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.376;QD=19.77;ReadPosRankSum=2.390;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1654,183,0 chrXI 41430 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.93;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1728,189,0 chrXI 41533 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.05;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1657,180,0 chrXI 41540 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.56;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1441,162,0 chrXI 41703 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.27;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2197,237,0 chrXI 42021 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.59;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1037,117,0 chrXI 42126 . A G 532 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.00;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:565,63,0 chrXI 42141 . T C 446 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.52;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:54:479,54,0 chrXI 42198 . A T 753 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.93;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:81:786,81,0 chrXI 42450 . G A 1049 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1082,114,0 chrXI 42876 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.87;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1921,210,0 chrXI 43368 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.84;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1565,183,0 chrXI 43498 . T C 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=86;Dels=0.00;FS=7.533;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.000;QD=18.62;ReadPosRankSum=2.392;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1634,186,0 chrXI 43629 . G A 2518 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.89;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2551,273,0 chrXI 43668 . A T 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=3.052;HaplotypeScore=17.4283;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.039;QD=19.03;ReadPosRankSum=1.600;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2031,225,0 chrXI 43949 . G T 1984 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=18.5283;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.08;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2017,222,0 chrXI 44136 . T C 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=61;Dels=0.00;FS=3.802;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.982;QD=18.92;ReadPosRankSum=1.675;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1187,129,0 chrXI 44292 . T C 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.289;QD=19.23;ReadPosRankSum=1.660;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1918,213,0 chrXI 44334 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.1354;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.04;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1917,210,0 chrXI 44364 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.73;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1919,213,0 chrXI 44733 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.80;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1747,192,0 chrXI 45069 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.62;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1467,159,0 chrXI 45213 . A G 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.632;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.462;QD=17.02;ReadPosRankSum=1.675;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1054,120,0 chrXI 45217 . G T 1146 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.91;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1179,126,0 chrXI 45405 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.37;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2791,294,0 chrXI 45525 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.10;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1624,186,0 chrXI 46074 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=16.46;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1350,147,0 chrXI 46101 . T C 1291 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=15.94;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1324,147,0 chrXI 46134 . T G 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=102;Dels=0.00;FS=4.305;HaplotypeScore=7.3938;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.518;QD=16.95;ReadPosRankSum=1.696;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,96:102:99:1762,198,0 chrXI 46275 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.25;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1438,156,0 chrXI 46282 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1461;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.58;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1315,141,0 chrXI 46376 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=0.752;QD=18.69;ReadPosRankSum=2.373;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1229,138,0 chrXI 46392 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.64;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1021,111,0 chrXI 46420 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=16.07;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:78:740,78,0 chrXI 46444 . C T 478 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=15.42;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:31:57:511,57,0 chrXI 46458 . T C 474 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=14.81;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:57:507,57,0 chrXI 46587 . A C 715 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.550;QD=18.82;ReadPosRankSum=1.641;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,37:38:87:748,87,0 chrXI 46608 . C T 969 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1002,114,0 chrXI 46843 . C G 133.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:166,18,0 chrXI 46848 . C G 129.13 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.14;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:0,7:8:18:162,18,0 chrXI 46966 . G T 411 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.63;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:444,48,0 chrXI 48147 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.60;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:3327,351,0 chrXI 48385 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.65;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2155,231,0 chrXI 48499 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8725;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.34;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2326,261,0 chrXI 48790 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.68;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1509,162,0 chrXI 48808 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.27;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1517,165,0 chrXI 49687 . T A 830 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.29;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:863,93,0 chrXI 49819 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1347,144,0 chrXI 50395 . T G 1774 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.39;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1807,207,0 chrXI 50810 . C T 816 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.13;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:45:90:849,90,0 chrXI 51512 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.62;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1141,126,0 chrXI 51558 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.69;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1291,141,0 chrXI 52588 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.76;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2005,222,0 chrXI 53379 . T C 616 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.21;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:38:75:649,75,0 chrXI 53539 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1516,168,0 chrXI 53931 . A G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.634;QD=16.82;ReadPosRankSum=0.803;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1446,165,0 chrXI 55108 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.89;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1750,195,0 chrXI 55347 . T C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.1524;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.509;QD=20.09;ReadPosRankSum=1.681;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1439,162,0 chrXI 55666 . G A 2946 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=18.5077;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.82;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2979,315,0 chrXI 56302 . C T 2873 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.74;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2906,315,0 chrXI 56757 . A T 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.462;QD=17.99;ReadPosRankSum=1.694;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1688,186,0 chrXI 57519 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1783,189,0 chrXI 57957 . G C 2102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.904;QD=22.85;ReadPosRankSum=-0.339;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2135,218,0 chrXI 58239 . G A 1966 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.69;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1999,219,0 chrXI 58323 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=5.910;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-2.001;QD=18.57;ReadPosRankSum=2.748;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1593,177,0 chrXI 58428 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8782;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.13;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1764,198,0 chrXI 58673 . A G 727 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=16.52;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:760,84,0 chrXI 59004 . T A 871 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:904,96,0 chrXI 59136 . A C 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.61;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2237,249,0 chrXI 59823 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.67;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2135,234,0 chrXI 60173 . G A 2399 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.07;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2432,258,0 chrXI 60963 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.27;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1607,180,0 chrXI 61076 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.22;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2237,240,0 chrXI 61338 . G C 2171 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.34;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2204,246,0 chrXI 61541 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1905,210,0 chrXI 62544 . T C 4063.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3799;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.57;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,180:180:99:4063,468,0 chrXI 62646 . G A 3050 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.33;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3083,348,0 chrXI 62759 . T C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.936;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.487;QD=20.24;ReadPosRankSum=1.592;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2037,225,0 chrXI 62943 . A G 2157 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.4807;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.09;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2190,243,0 chrXI 63297 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.53;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2045,222,0 chrXI 63649 . T C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.827;QD=21.76;ReadPosRankSum=1.653;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1948,222,0 chrXI 63975 . G A 388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.283;DP=99;Dels=0.00;FS=16.288;HaplotypeScore=12.3114;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=0.170;QD=3.92;ReadPosRankSum=2.042;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:58,40:99:82:418,0,82 chrXI 63990 . T C 67.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DP=99;Dels=0.00;FS=6.808;HaplotypeScore=26.8369;MLEAC=1;MLEAF=0.500;MQ=33.63;MQ0=0;MQRankSum=-1.686;QD=0.68;ReadPosRankSum=-2.410;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:79,20:99:97:97,0,383 chrXI 63993 . C T 60.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.342;DP=102;Dels=0.00;FS=6.787;HaplotypeScore=34.7273;MLEAC=1;MLEAF=0.500;MQ=33.50;MQ0=0;MQRankSum=0.122;QD=0.59;ReadPosRankSum=-2.861;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:82,20:102:90:90,0,426 chrXI 63999 . C A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.347;DP=99;Dels=0.00;FS=7.915;HaplotypeScore=19.9969;MLEAC=1;MLEAF=0.500;MQ=32.79;MQ0=0;MQRankSum=-0.227;QD=0.28;ReadPosRankSum=-3.386;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:79,15:99:58:58,0,456 chrXI 64001 . G T 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;DP=99;Dels=0.00;FS=7.038;HaplotypeScore=16.1309;MLEAC=1;MLEAF=0.500;MQ=32.79;MQ0=0;MQRankSum=-0.296;QD=0.28;ReadPosRankSum=-3.422;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:78,18:99:58:58,0,476 chrXI 64032 . G C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=5.658;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;MQRankSum=0.113;QD=10.28;ReadPosRankSum=1.054;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:989,108,0 chrXI 64037 . T C 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;MQRankSum=1.754;QD=11.21;ReadPosRankSum=2.392;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:986,108,0 chrXI 64053 . T C 710.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;DP=88;Dels=0.00;FS=5.377;HaplotypeScore=9.5641;MLEAC=1;MLEAF=0.500;MQ=32.46;MQ0=0;MQRankSum=-1.653;QD=8.07;ReadPosRankSum=4.097;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:19,69:88:73:740,0,73 chrXI 64059 . C T 654.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.621;DP=88;Dels=0.00;FS=4.927;HaplotypeScore=17.2291;MLEAC=1;MLEAF=0.500;MQ=31.48;MQ0=0;MQRankSum=-0.192;QD=7.43;ReadPosRankSum=4.745;SB=-4.400e+02 GT:AD:DP:GQ:PL 0/1:24,64:88:99:684,0,123 chrXI 64062 . T C 612.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DP=88;Dels=0.00;FS=3.358;HaplotypeScore=20.2693;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-1.564;QD=6.95;ReadPosRankSum=4.515;SB=-4.180e+02 GT:AD:DP:GQ:PL 0/1:25,63:88:99:642,0,164 chrXI 64068 . G A,C 898.01 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=90;Dels=0.03;FS=0.000;HaplotypeScore=4.7268;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.93;MQ0=0;QD=9.98;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/2:0,24,62:87:99:958,654,615,305,0,221 chrXI 64070 . T G 573.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;DP=99;Dels=0.00;FS=3.027;HaplotypeScore=15.0859;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=0;MQRankSum=0.263;QD=5.79;ReadPosRankSum=4.225;SB=-4.180e+02 GT:AD:DP:GQ:PL 0/1:33,65:99:99:603,0,276 chrXI 64077 . C T 271.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.120;DP=105;Dels=0.00;FS=5.817;HaplotypeScore=11.3876;MLEAC=1;MLEAF=0.500;MQ=33.92;MQ0=0;MQRankSum=-1.646;QD=2.58;ReadPosRankSum=-0.303;SB=-2.790e+02 GT:AD:DP:GQ:PL 0/1:73,32:105:99:301,0,712 chrXI 64083 . T C 219.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.181;DP=107;Dels=0.00;FS=7.527;HaplotypeScore=6.3993;MLEAC=1;MLEAF=0.500;MQ=35.69;MQ0=0;MQRankSum=-3.000;QD=2.05;ReadPosRankSum=1.806;SB=-2.470e+02 GT:AD:DP:GQ:PL 0/1:76,31:107:99:249,0,806 chrXI 64086 . A T 234.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;DP=109;Dels=0.00;FS=5.830;HaplotypeScore=12.0255;MLEAC=1;MLEAF=0.500;MQ=37.98;MQ0=0;MQRankSum=-1.410;QD=2.15;ReadPosRankSum=2.441;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:76,31:109:99:264,0,800 chrXI 64101 . A T 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.102;DP=110;Dels=0.00;FS=7.719;HaplotypeScore=8.6680;MLEAC=1;MLEAF=0.500;MQ=42.29;MQ0=0;MQRankSum=-3.416;QD=1.85;ReadPosRankSum=5.269;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:78,31:110:99:234,0,1055 chrXI 64110 . A C 188.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;DP=117;Dels=0.00;FS=5.718;HaplotypeScore=10.4626;MLEAC=1;MLEAF=0.500;MQ=44.89;MQ0=0;MQRankSum=-4.997;QD=1.61;ReadPosRankSum=4.476;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:85,32:117:99:218,0,1100 chrXI 64116 . A G 113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620;DP=116;Dels=0.00;FS=7.682;HaplotypeScore=12.8464;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=0;MQRankSum=-6.033;QD=0.97;ReadPosRankSum=3.137;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:84,31:116:99:143,0,1226 chrXI 64123 . A T 191.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;DP=117;Dels=0.00;FS=9.255;HaplotypeScore=7.2798;MLEAC=1;MLEAF=0.500;MQ=48.18;MQ0=0;MQRankSum=-6.157;QD=1.63;ReadPosRankSum=-0.076;SB=-2.720e+02 GT:AD:DP:GQ:PL 0/1:84,33:117:99:221,0,1381 chrXI 64132 . C T 84.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.366;DP=112;Dels=0.00;FS=6.625;HaplotypeScore=5.5739;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=0;MQRankSum=-5.863;QD=0.75;ReadPosRankSum=-1.656;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:87,25:112:99:114,0,1454 chrXI 64134 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;DP=112;Dels=0.01;FS=9.056;HaplotypeScore=4.5823;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=0;MQRankSum=-6.343;QD=0.15;ReadPosRankSum=-2.399;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:87,24:111:47:47,0,1507 chrXI 64200 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.369;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=51.98;MQ0=0;MQRankSum=-3.502;QD=0.13;ReadPosRankSum=-3.786;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:79,23:102:43:43,0,1296 chrXI 64224 . C T 627.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.479;DP=104;Dels=0.00;FS=3.712;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=47.90;MQ0=0;MQRankSum=-2.163;QD=6.03;ReadPosRankSum=-1.460;SB=-4.890e+02 GT:AD:DP:GQ:PL 0/1:53,49:104:99:657,0,676 chrXI 64248 . C T 395.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;DP=109;Dels=0.00;FS=10.134;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=45.57;MQ0=0;MQRankSum=2.239;QD=3.62;ReadPosRankSum=-2.332;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:74,34:109:99:425,0,1149 chrXI 64254 . C T 250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.558;DP=103;Dels=0.00;FS=24.217;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=0;MQRankSum=1.798;QD=2.43;ReadPosRankSum=-1.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,22:103:99:280,0,1248 chrXI 64278 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;DP=108;Dels=0.00;FS=19.507;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=0;MQRankSum=0.992;QD=0.10;ReadPosRankSum=-3.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,12:108:40:40,0,1630 chrXI 64560 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.66;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1603,183,0 chrXI 64563 . A T 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.018;QD=21.09;ReadPosRankSum=1.463;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1509,168,0 chrXI 64590 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.00;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1333,147,0 chrXI 65076 . G A 821 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.19;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:854,90,0 chrXI 65568 . T G 1989 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2022,234,0 chrXI 66073 . A C 1679 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.73;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1712,192,0 chrXI 66233 . A T 919 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:952,102,0 chrXI 66285 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.85;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1034,114,0 chrXI 66342 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.42;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1251,138,0 chrXI 66450 . C G 913 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=16.60;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:946,105,0 chrXI 66546 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1498,168,0 chrXI 66663 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8678;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.12;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1279,144,0 chrXI 66681 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=64;Dels=0.00;FS=2.894;HaplotypeScore=5.1862;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.647;QD=19.75;ReadPosRankSum=2.372;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1297,144,0 chrXI 67187 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.46;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2072,231,0 chrXI 67386 . G C 1621 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.53;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1654,180,0 chrXI 67440 . A C 1089 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.46;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1122,123,0 chrXI 67552 . C A 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=7.782;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=1.617;QD=17.75;ReadPosRankSum=1.078;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1648,177,0 chrXI 67619 . A G 1035 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=21.12;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1068,126,0 chrXI 67635 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.14;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:794,87,0 chrXI 67641 . T C 586 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=18.31;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:619,75,0 chrXI 67672 . G A 598 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=17.59;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:631,69,0 chrXI 67691 . A C 458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=33.3195;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;MQRankSum=1.535;QD=13.09;ReadPosRankSum=-0.248;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:30:491,30,0 chrXI 67740 . C G 616 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=15.02;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:72:649,72,0 chrXI 67755 . G T 644 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=17.41;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:677,75,0 chrXI 67783 . T C 270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DP=27;Dels=0.00;FS=13.719;HaplotypeScore=7.1335;MLEAC=2;MLEAF=1.00;MQ=38.39;MQ0=0;MQRankSum=0.325;QD=10.00;ReadPosRankSum=-1.627;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:5,21:27:39:303,39,0 chrXI 67844 . G A 102.26 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=7.30;SB=-1.572e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:15:135,15,0 chrXI 67862 . C G 171.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=11.40;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:204,24,0 chrXI 67872 . C G 183.03 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.44;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:24:216,24,0 chrXI 67884 . A G 218 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=12.11;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:251,30,0 chrXI 67915 . A C 260 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=16.25;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:293,33,0 chrXI 67929 . T C 229 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=17.62;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:262,30,0 chrXI 67935 . T A 170.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=13.08;SB=-2.204e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:203,24,0 chrXI 67992 . T C 200.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=15.39;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:233,27,0 chrXI 67998 . C T 238 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=17.00;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:271,30,0 chrXI 68117 . G A 99.26 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.0675;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=5.51;SB=-1.062e+02 GT:AD:DP:GQ:PL 1/1:0,16:18:15:132,15,0 chrXI 68184 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=25.04;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1986,210,0 chrXI 68250 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=24.55;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1850,204,0 chrXI 68337 . G A 565 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.87;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:598,63,0 chrXI 68377 . G A 242 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=21.9175;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=8.34;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:275,30,0 chrXI 68447 . A G 635 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=14.77;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:75:668,75,0 chrXI 68503 . A C 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.173;QD=16.47;ReadPosRankSum=1.675;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1021,114,0 chrXI 68563 . T C 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.141;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.083;QD=18.22;ReadPosRankSum=1.660;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1782,198,0 chrXI 68580 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.47;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1990,228,0 chrXI 68628 . C T 2110 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.58;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2143,234,0 chrXI 68640 . C G 1928 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=16.91;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:1961,219,0 chrXI 68691 . A C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=6.314;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-0.793;QD=20.40;ReadPosRankSum=1.635;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2236,252,0 chrXI 68753 . T G 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=25;Dels=0.00;FS=20.569;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;MQRankSum=0.741;QD=1.84;ReadPosRankSum=-2.435;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,8:25:9:78,9,0 chrXI 68802 . G A 396 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=7.76;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:48:429,48,0 chrXI 68859 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.38;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,129,0 chrXI 68895 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.57;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1296,141,0 chrXI 68934 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.67;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1687,183,0 chrXI 69070 . A T 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=7.420;HaplotypeScore=7.3686;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.389;QD=20.17;ReadPosRankSum=2.400;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2030,222,0 chrXI 69087 . A C 1457 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.44;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1490,168,0 chrXI 69153 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.43;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:84:758,84,0 chrXI 69279 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.79;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:963,105,0 chrXI 69630 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=4.949;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.132;QD=19.95;ReadPosRankSum=1.640;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1549,180,0 chrXI 69662 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.28;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1383,156,0 chrXI 69696 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.99;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1742,192,0 chrXI 69933 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.67;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2410,264,0 chrXI 69954 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.73;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2026,219,0 chrXI 69964 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.115;DP=108;Dels=0.00;FS=9.196;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.984;QD=16.91;ReadPosRankSum=3.343;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:1859,210,0 chrXI 70228 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=14.53;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:93:803,93,0 chrXI 70422 . A G 1094 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.79;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1127,126,0 chrXI 70540 . A T 829 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.72;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:93:862,93,0 chrXI 70579 . A C 1016 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=31.2909;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.09;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1049,117,0 chrXI 70690 . T C 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.050;QD=19.44;ReadPosRankSum=1.680;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1316,153,0 chrXI 70692 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.68;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1377,150,0 chrXI 70711 . C T 973 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.36;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1006,108,0 chrXI 70841 . A G 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=69;Dels=0.00;FS=3.347;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.801;QD=20.77;ReadPosRankSum=1.681;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1466,162,0 chrXI 71068 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.80;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1676,186,0 chrXI 71145 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.00;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1496,168,0 chrXI 71199 . T C 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.565;QD=18.69;ReadPosRankSum=1.676;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1192,135,0 chrXI 71541 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.78;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1514,162,0 chrXI 71901 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.26;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1275,138,0 chrXI 71930 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.05;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1336,141,0 chrXI 72189 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.14;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1386,153,0 chrXI 72294 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.69;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1229,138,0 chrXI 72330 . A G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.293;QD=20.34;ReadPosRankSum=1.626;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1355,150,0 chrXI 72431 . C T 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;DP=67;Dels=0.00;FS=3.490;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.681;QD=22.64;ReadPosRankSum=1.370;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1550,165,0 chrXI 72501 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.00;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2011,228,0 chrXI 72528 . A G 1627 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.86;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1660,186,0 chrXI 72594 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.24;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1571,168,0 chrXI 72614 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.85;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1503,171,0 chrXI 72810 . G T 1671 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.15;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1704,183,0 chrXI 72833 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.77;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2068,219,0 chrXI 73029 . T A 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.240;DP=82;Dels=0.00;FS=14.230;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.506;QD=19.91;ReadPosRankSum=3.347;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:99:1666,183,0 chrXI 73164 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=2.796;HaplotypeScore=5.7968;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-1.063;QD=19.52;ReadPosRankSum=2.388;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1595,174,0 chrXI 73173 . A G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=2.846;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.864;QD=17.44;ReadPosRankSum=2.388;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1446,165,0 chrXI 73235 . A G 2408 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.74;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2441,270,0 chrXI 73263 . T C 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3415;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.812;QD=19.79;ReadPosRankSum=1.678;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2586,294,0 chrXI 73279 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.75;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2564,279,0 chrXI 73320 . T C 2514 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.25;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2547,288,0 chrXI 73719 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=22.43;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2007,213,0 chrXI 73745 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.78;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1819,198,0 chrXI 73911 . C G 1570 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.92;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1603,180,0 chrXI 73964 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=78;Dels=0.00;FS=7.173;HaplotypeScore=9.6680;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.425;QD=17.73;ReadPosRankSum=2.322;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1416,159,0 chrXI 74037 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.34;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1677,177,0 chrXI 74052 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=17.00;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1308,150,0 chrXI 74086 . C T 576 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=10.47;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:66:609,66,0 chrXI 74091 . C T 550 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=10.58;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:63:583,63,0 chrXI 74103 . C A 416 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=9.67;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:48:449,48,0 chrXI 74144 . A T 680 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=11.72;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:78:713,78,0 chrXI 74163 . C T 606 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=13.17;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:639,72,0 chrXI 74375 . C G 945 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.48;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:978,108,0 chrXI 74429 . C T 540 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=18.62;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:66:573,66,0 chrXI 74549 . T A 607 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=16.41;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:69:640,69,0 chrXI 74603 . A C 288 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;MQRankSum=-0.217;QD=18.00;ReadPosRankSum=0.000;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:1,15:16:36:321,36,0 chrXI 74756 . C T 677 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.07;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:75:710,75,0 chrXI 75397 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.56;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1801,198,0 chrXI 75765 . A C 1719 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8200;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.23;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1752,195,0 chrXI 76124 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.397;QD=18.63;ReadPosRankSum=1.690;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1579,183,0 chrXI 76510 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.89;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1516,174,0 chrXI 76532 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.04;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1480,159,0 chrXI 76804 . C T 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.52;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,95:100:99:2185,240,0 chrXI 76914 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.54;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2015,225,0 chrXI 77172 . C T 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.688;QD=23.31;ReadPosRankSum=0.548;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1921,213,0 chrXI 77498 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.56;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1187,132,0 chrXI 77759 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1812,189,0 chrXI 77827 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.23;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1211,135,0 chrXI 78341 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1484,165,0 chrXI 78422 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.12;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1892,210,0 chrXI 78581 . A G 620 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=14.42;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:653,75,0 chrXI 78639 . A G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.006;QD=15.46;ReadPosRankSum=1.676;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1007,114,0 chrXI 78825 . T G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=55;Dels=0.00;FS=2.720;HaplotypeScore=6.2052;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=1;MQRankSum=-2.038;QD=0.25;ReadPosRankSum=2.221;SB=-3.968e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:6:45,6,0 chrXI 79688 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1078,120,0 chrXI 79729 . G A 979 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.25;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1012,108,0 chrXI 80751 . C A 2377 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2410,267,0 chrXI 81244 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.99;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1775,198,0 chrXI 81400 . A C 806 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.80;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:839,96,0 chrXI 81406 . T C 693 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.75;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:726,84,0 chrXI 81418 . T C 691 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.36;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:724,81,0 chrXI 81504 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=15.90;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1289,138,0 chrXI 81518 . T C 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.256;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.161;QD=12.87;ReadPosRankSum=1.694;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1204,135,0 chrXI 81532 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=14.73;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1859,210,0 chrXI 81709 . T A 1829 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.30;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1862,201,0 chrXI 81758 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.483;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.071;QD=20.33;ReadPosRankSum=1.685;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1517,180,0 chrXI 81865 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=7.8592;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.19;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2393,273,0 chrXI 82057 . A G 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1709;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.219;QD=20.16;ReadPosRankSum=1.026;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2230,246,0 chrXI 82281 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4319;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.82;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2635,279,0 chrXI 82709 . T C 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.646;QD=21.36;ReadPosRankSum=1.703;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2596,291,0 chrXI 82919 . A G 758 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.49;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:791,90,0 chrXI 83549 . A G 2041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.411;QD=18.90;ReadPosRankSum=1.700;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2074,231,0 chrXI 83554 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.59;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2051,228,0 chrXI 83733 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=17.56;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:946,105,0 chrXI 83736 . G A 911 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=17.86;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:944,102,0 chrXI 83745 . T G 656 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=14.91;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:689,78,0 chrXI 83746 . G A 692 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=15.73;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:725,78,0 chrXI 83753 . A G 709 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;QD=13.38;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:742,81,0 chrXI 83792 . C G 451 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=9.40;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:54:484,54,0 chrXI 83795 . C T 459 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;QD=9.56;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:54:492,54,0 chrXI 83830 . T C 541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=4.949;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=-0.762;QD=10.82;ReadPosRankSum=1.663;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:63:574,63,0 chrXI 83889 . C T 496 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=11.27;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:57:529,57,0 chrXI 83901 . G A 552 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=13.80;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:585,63,0 chrXI 83934 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=17.47;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1291,141,0 chrXI 83983 . A G 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.202;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=1.660;QD=21.65;ReadPosRankSum=0.898;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:2133,217,0 chrXI 84009 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=21.09;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1657,183,0 chrXI 84030 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=17.43;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:887,102,0 chrXI 84059 . T A 897 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.94;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:930,99,0 chrXI 84078 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=19.68;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1076,123,0 chrXI 84166 . G T 876 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=19.91;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:909,99,0 chrXI 84171 . C G 757 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=17.60;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:790,90,0 chrXI 84187 . T C 663 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.92;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:696,78,0 chrXI 84304 . T A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114;DP=77;Dels=0.00;FS=5.863;HaplotypeScore=164.0364;MLEAC=1;MLEAF=0.500;MQ=47.66;MQ0=0;MQRankSum=-4.257;QD=0.29;ReadPosRankSum=-4.558;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:68,9:77:52:52,0,64 chrXI 84308 . A T 103.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.864;DP=71;Dels=0.00;FS=8.413;HaplotypeScore=54.2164;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.409;QD=1.45;ReadPosRankSum=4.028;SB=-5.433e+02 GT:AD:DP:GQ:PL 1/1:8,63:71:15:136,15,0 chrXI 84384 . A G 1290 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.17;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1323,147,0 chrXI 84401 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=15.97;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1135,126,0 chrXI 84433 . A T 1285 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.08;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1318,147,0 chrXI 84589 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.75;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1862,198,0 chrXI 84635 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.21;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2308,255,0 chrXI 84671 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=23.47;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2450,261,0 chrXI 85027 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=95;Dels=0.00;FS=2.760;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.583;QD=17.99;ReadPosRankSum=2.294;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1742,198,0 chrXI 85423 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.63;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1742,192,0 chrXI 85468 . C G 1592 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.41;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1625,186,0 chrXI 85522 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.59;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1242,132,0 chrXI 85567 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.83;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1452,162,0 chrXI 85801 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=13.82;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:710,81,0 chrXI 85821 . T C 487 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=11.60;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:57:520,57,0 chrXI 85837 . T G 419 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=11.32;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:452,51,0 chrXI 87119 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.3224;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.82;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1678,186,0 chrXI 87422 . T G 2430 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4196;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.44;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2463,276,0 chrXI 87584 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.27;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1352,150,0 chrXI 87737 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.36;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2110,234,0 chrXI 88322 . T C 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=-1.173;QD=22.66;ReadPosRankSum=1.676;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1438,162,0 chrXI 88479 . C G 1750 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5598;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.83;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1783,207,0 chrXI 89063 . A T 1224 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=16.54;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1257,141,0 chrXI 89097 . T G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.433;QD=23.14;ReadPosRankSum=1.647;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1907,210,0 chrXI 89124 . A G 2214 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.50;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2247,258,0 chrXI 89225 . T A 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.412;QD=22.40;ReadPosRankSum=1.699;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2407,264,0 chrXI 89262 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=16.84;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1582,168,0 chrXI 89273 . A G 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=78.0114;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=1.608;QD=14.73;ReadPosRankSum=0.701;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1270,144,0 chrXI 89285 . T C 829 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=10.49;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:862,99,0 chrXI 89332 . T C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.088;QD=19.64;ReadPosRankSum=1.703;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2350,264,0 chrXI 89367 . T C 3082 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.88;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3115,363,0 chrXI 89374 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.82;SB=-1.947e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3260,369,0 chrXI 89534 . A T 2019 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0424;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.35;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2052,219,0 chrXI 89545 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.27;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2036,216,0 chrXI 89554 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=16.75;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1892,210,0 chrXI 89958 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8598;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.80;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1930,207,0 chrXI 90318 . T A 2154 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.21;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2187,234,0 chrXI 90349 . A G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=99;Dels=0.00;FS=3.533;HaplotypeScore=9.2657;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.268;QD=18.43;ReadPosRankSum=1.696;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1858,207,0 chrXI 90595 . A G 1009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;MQRankSum=-0.541;QD=15.77;ReadPosRankSum=1.624;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1042,114,0 chrXI 90600 . G C 888 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=14.10;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:921,108,0 chrXI 90610 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=12.77;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:914,102,0 chrXI 90634 . T C 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=7.406;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;MQRankSum=-1.273;QD=13.45;ReadPosRankSum=2.374;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:907,105,0 chrXI 90637 . C T 909 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.77;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:942,99,0 chrXI 90681 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=15.77;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1263,144,0 chrXI 90751 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.01;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1634,180,0 chrXI 90778 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2918;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.70;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1548,177,0 chrXI 91036 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.18;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1519,177,0 chrXI 91057 . A G 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=4.424;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.818;QD=18.54;ReadPosRankSum=1.684;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1368,159,0 chrXI 91402 . T C 1742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=5.006;HaplotypeScore=6.9764;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.893;QD=18.34;ReadPosRankSum=1.696;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1775,198,0 chrXI 91565 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2116,228,0 chrXI 91606 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.235;QD=21.00;ReadPosRankSum=1.232;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1902,213,0 chrXI 91796 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=21.12;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:941,105,0 chrXI 91825 . G C 1039 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.24;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1072,120,0 chrXI 92069 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.12;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:999,114,0 chrXI 92135 . C A 527 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=15.97;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:560,60,0 chrXI 92145 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=13.82;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:503,57,0 chrXI 92158 . C T 533 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=13.00;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:60:566,60,0 chrXI 92174 . G A 639 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=14.20;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:672,72,0 chrXI 92193 . C T 620 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=14.09;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:653,72,0 chrXI 92251 . G T 324 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=9.26;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:357,39,0 chrXI 92252 . T A 323 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=9.23;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:356,39,0 chrXI 92279 . A T 180.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=33;Dels=0.00;FS=12.811;HaplotypeScore=2.9475;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;MQRankSum=1.131;QD=5.45;ReadPosRankSum=2.013;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:4,29:33:27:213,27,0 chrXI 92313 . T C 388 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=12.93;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:421,48,0 chrXI 92330 . G T 462 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.44;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:54:495,54,0 chrXI 92358 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=14.23;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:531,60,0 chrXI 92395 . T C 474 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=15.29;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:507,57,0 chrXI 92422 . C T 382 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=13.64;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:415,45,0 chrXI 92424 . C T 407 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=14.54;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:48:440,48,0 chrXI 92438 . G A 329 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=13.16;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:39:362,39,0 chrXI 92441 . G T 318 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=14.45;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:351,39,0 chrXI 92500 . T G 227 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=12.61;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:30:260,30,0 chrXI 92507 . G T 162.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=10.13;SB=-1.651e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:195,21,0 chrXI 92653 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=29.2508;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;QD=8.72;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:347,39,0 chrXI 92728 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=25.16;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1794,192,0 chrXI 92948 . A T 1585 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=24.02;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1618,177,0 chrXI 93041 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.18;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1702,186,0 chrXI 93302 . T G 2453 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.47;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,124:126:99:2486,273,0 chrXI 93349 . G T 1735 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.86;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1768,192,0 chrXI 93352 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.04;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1639,183,0 chrXI 93445 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.48;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1632,180,0 chrXI 93562 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.78;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2565,285,0 chrXI 93575 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.89;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2477,267,0 chrXI 93852 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1275,147,0 chrXI 94372 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4496;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.07;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1671,183,0 chrXI 94473 . T C 2261 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.84;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2294,258,0 chrXI 94945 . C A 2372 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.9469;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.38;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2405,261,0 chrXI 94985 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.56;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1852,201,0 chrXI 95185 . T C 2209 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.72;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2242,249,0 chrXI 95374 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.55;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1890,207,0 chrXI 95620 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.23;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1937,216,0 chrXI 96471 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=2.681;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.787;QD=19.00;ReadPosRankSum=2.360;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1078,120,0 chrXI 96552 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.71;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1373,153,0 chrXI 97020 . C T 800 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.51;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:833,93,0 chrXI 97113 . T C 1467 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.96;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1500,171,0 chrXI 97191 . A T 1173 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1206,129,0 chrXI 97362 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.97;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1606,174,0 chrXI 97380 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.25;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1511,165,0 chrXI 97410 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.34;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1329,141,0 chrXI 97456 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.55;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1266,138,0 chrXI 97587 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.57;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1349,147,0 chrXI 97620 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=66;Dels=0.00;FS=2.881;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.253;QD=20.68;ReadPosRankSum=2.375;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1398,156,0 chrXI 97680 . T C 1081 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.96;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1114,129,0 chrXI 97716 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.5690;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.88;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1345,150,0 chrXI 97758 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.95;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1625,177,0 chrXI 97897 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=22.56;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1409,156,0 chrXI 97953 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=24.95;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1680,180,0 chrXI 98046 . T C 702 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.94;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:735,84,0 chrXI 98085 . A G 503 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.77;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:536,60,0 chrXI 98124 . G A 356 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=13.19;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:42:389,42,0 chrXI 98175 . G C 503 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.34;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:536,63,0 chrXI 98234 . G C 742 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.03;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:87:775,87,0 chrXI 98324 . A G 739 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:87:772,87,0 chrXI 98325 . C T 789 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=18.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:87:822,87,0 chrXI 98422 . A G 767 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.97;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:87:800,87,0 chrXI 98452 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.07;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1002,108,0 chrXI 98597 . T A 423 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=16.27;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:456,48,0 chrXI 98608 . C T 466 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=12.94;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:54:499,54,0 chrXI 98619 . G T 384 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=10.11;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:45:417,45,0 chrXI 98634 . T A 432 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=9.82;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:51:465,51,0 chrXI 98658 . T C 555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;MQRankSum=-0.901;QD=11.10;ReadPosRankSum=1.663;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:66:588,66,0 chrXI 98707 . A C 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.014;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=9.7871;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=1.868;QD=19.33;ReadPosRankSum=0.510;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1019,114,0 chrXI 98834 . T G 1301 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.71;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1334,153,0 chrXI 99008 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.80;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2051,234,0 chrXI 99224 . T C 2894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=148;Dels=0.00;FS=6.790;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.320;QD=19.55;ReadPosRankSum=2.367;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2927,330,0 chrXI 99633 . A G 3461.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=173;Dels=0.00;FS=5.269;HaplotypeScore=7.6033;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.790;QD=20.01;ReadPosRankSum=2.922;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:3,165:173:99:3461,396,0 chrXI 100379 . A C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.7555;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.015;QD=20.60;ReadPosRankSum=0.418;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1269,141,0 chrXI 100670 . T C 902 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.04;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:935,108,0 chrXI 101564 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.2135;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.08;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1502,168,0 chrXI 102797 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9747;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.54;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1902,207,0 chrXI 103490 . T C 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=146;Dels=0.00;FS=3.011;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.052;QD=19.47;ReadPosRankSum=2.416;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,144:146:99:2876,327,0 chrXI 103493 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.6787;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.99;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2991,330,0 chrXI 103508 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.418;DP=154;Dels=0.00;FS=3.032;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.934;QD=18.06;ReadPosRankSum=2.370;SB=-1.930e+03 GT:AD:DP:GQ:PL 1/1:2,152:154:99:2815,318,0 chrXI 103577 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.88;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1982,213,0 chrXI 103649 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.08;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2239,240,0 chrXI 104318 . G T 1985 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.30;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2018,222,0 chrXI 104696 . G A 2072 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=13.1860;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.14;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2105,231,0 chrXI 104921 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=6.064;HaplotypeScore=7.1377;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.080;QD=15.44;ReadPosRankSum=1.595;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:1623,186,0 chrXI 105107 . C A 1874 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.35;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1907,213,0 chrXI 105188 . C T 2884 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9179;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.36;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2917,321,0 chrXI 105353 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.97;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2361,261,0 chrXI 105974 . A G 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=4.929;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.660;QD=21.00;ReadPosRankSum=1.691;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1818,201,0 chrXI 106209 . T C 1938 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.63;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1971,219,0 chrXI 106691 . C T 925 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.68;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:958,105,0 chrXI 106700 . C T 729 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.20;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:762,87,0 chrXI 106932 . A T 2060 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.39;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2093,228,0 chrXI 106986 . A C 853 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=31.7604;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=18.54;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:886,99,0 chrXI 107194 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1578,171,0 chrXI 107298 . A T 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.632;QD=18.79;ReadPosRankSum=1.682;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1405,153,0 chrXI 107546 . T C 2160 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.82;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2193,246,0 chrXI 107762 . T A 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.192;QD=21.84;ReadPosRankSum=1.655;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1999,216,0 chrXI 108164 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.54;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2272,246,0 chrXI 108227 . C T 2906 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.85;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2939,312,0 chrXI 108272 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.35;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2597,279,0 chrXI 108780 . T G 1422 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=0.641;QD=19.48;ReadPosRankSum=1.685;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1455,168,0 chrXI 108782 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.32;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1516,171,0 chrXI 108868 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1259,132,0 chrXI 109838 . C G 1707 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6069;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.76;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1740,195,0 chrXI 110832 . G C 1758 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5608;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.11;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1791,198,0 chrXI 111256 . T C 811 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.43;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:844,96,0 chrXI 111265 . A G 784 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.04;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:93:817,93,0 chrXI 111552 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.16;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1324,144,0 chrXI 111555 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.732;QD=18.44;ReadPosRankSum=1.570;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1213,135,0 chrXI 111787 . T G 1878 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.19;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1911,210,0 chrXI 112117 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.14;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1181,129,0 chrXI 113168 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.47;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:887,99,0 chrXI 113806 . T A 1611 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.48;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1644,177,0 chrXI 113884 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1479,162,0 chrXI 114085 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.18;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1874,201,0 chrXI 114400 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.29;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2326,252,0 chrXI 114403 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.57;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2186,237,0 chrXI 114430 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=16.56;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1490,165,0 chrXI 115995 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.02;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2036,216,0 chrXI 118009 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.57;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2084,222,0 chrXI 118487 . C A 1719 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.3242;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.76;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1752,186,0 chrXI 119090 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.59;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1660,183,0 chrXI 119238 . G A 2584 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.67;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2617,282,0 chrXI 119339 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.3118;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.05;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1929,216,0 chrXI 119794 . G C 1390 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.78;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1423,159,0 chrXI 120088 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2223,246,0 chrXI 120268 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.00;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1853,201,0 chrXI 120563 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.08;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1550,171,0 chrXI 120740 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.26;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2095,240,0 chrXI 120989 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.74;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:941,105,0 chrXI 120995 . A T 999 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.81;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1032,111,0 chrXI 121247 . T C 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=70;Dels=0.00;FS=2.919;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.232;QD=21.56;ReadPosRankSum=2.307;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1542,171,0 chrXI 121508 . T C 1891 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.78;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1924,216,0 chrXI 122682 . T G 1401 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1434,159,0 chrXI 124745 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1105,120,0 chrXI 125293 . G C 1896 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6363;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.41;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1929,216,0 chrXI 125450 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1546,174,0 chrXI 125483 . T A 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=6.463;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.335;QD=19.74;ReadPosRankSum=1.676;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1257,138,0 chrXI 125651 . T A 1315 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1348,147,0 chrXI 125802 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1084,120,0 chrXI 126022 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.4396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1958,219,0 chrXI 126748 . A G 2546 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.39;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2579,288,0 chrXI 126814 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.8909;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.12;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2377,258,0 chrXI 127793 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.16;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1492,171,0 chrXI 128185 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=16.62;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1246,138,0 chrXI 128195 . A C 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=67;Dels=0.00;FS=2.658;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.203;QD=17.34;ReadPosRankSum=2.376;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1195,135,0 chrXI 128646 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.01;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2512,273,0 chrXI 129031 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.002;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.732;QD=19.56;ReadPosRankSum=1.661;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1950,225,0 chrXI 129125 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2063,225,0 chrXI 129198 . C G 1715 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.42;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1748,195,0 chrXI 129511 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.993;QD=19.54;ReadPosRankSum=1.693;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1772,204,0 chrXI 129844 . A G 2684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=6.054;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.228;QD=20.65;ReadPosRankSum=1.705;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2717,303,0 chrXI 129862 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.84;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2352,258,0 chrXI 129867 . C T 2172 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.10;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2205,237,0 chrXI 130226 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=21.84;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2741,288,0 chrXI 130457 . C T 2177 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6939;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.21;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2210,246,0 chrXI 130562 . T C 2311 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.60;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2344,267,0 chrXI 130642 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0789;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.910;QD=18.12;ReadPosRankSum=0.629;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2425,270,0 chrXI 130645 . A T 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=135;Dels=0.00;FS=2.935;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=0.028;QD=16.69;ReadPosRankSum=2.376;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2286,249,0 chrXI 130717 . G T 2184 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6531;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.20;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2217,237,0 chrXI 130789 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1778,201,0 chrXI 131939 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.34;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1500,162,0 chrXI 132152 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2018;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.06;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1586,177,0 chrXI 132155 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2018;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=15.33;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1474,162,0 chrXI 132251 . T A 904 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=14.58;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:937,102,0 chrXI 132257 . C T 912 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=13.61;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:945,102,0 chrXI 132266 . A G 903 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=13.09;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:936,105,0 chrXI 132287 . T C 816 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=12.18;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:849,96,0 chrXI 132298 . A G 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=65;Dels=0.00;FS=3.080;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-0.945;QD=12.49;ReadPosRankSum=2.373;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:2,62:65:93:845,93,0 chrXI 133472 . C A 1557 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=16.92;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1590,174,0 chrXI 133489 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.75;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1306,144,0 chrXI 133596 . C G 650 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=15.48;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:683,78,0 chrXI 133597 . A T 568 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=14.20;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:66:601,66,0 chrXI 133991 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=18.13;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1139,129,0 chrXI 134692 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.76;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1696,183,0 chrXI 135691 . C G 1680 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.24;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1713,192,0 chrXI 136140 . T A 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.185;QD=19.60;ReadPosRankSum=1.672;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1170,129,0 chrXI 136268 . C T 1142 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1175,126,0 chrXI 136273 . T A 1152 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1185,126,0 chrXI 136395 . C G 952 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.26;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:985,111,0 chrXI 136401 . C T 886 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.85;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:919,102,0 chrXI 136421 . A C 1305 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.05;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1338,150,0 chrXI 136692 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.86;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,153,0 chrXI 136700 . A T 1234 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.88;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1267,141,0 chrXI 136782 . G A 1139 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.78;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1172,129,0 chrXI 136836 . G T 1163 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=4.8130;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=21.54;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1196,132,0 chrXI 136860 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=20.03;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1475,162,0 chrXI 136898 . T C 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;MQRankSum=-1.118;QD=16.73;ReadPosRankSum=1.565;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1070,117,0 chrXI 136931 . A C 961 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=17.47;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:994,114,0 chrXI 137177 . T A 590 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=19.03;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:623,66,0 chrXI 137180 . C T 618 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=21.31;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:651,69,0 chrXI 137228 . A G 608 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=20.27;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:641,72,0 chrXI 137245 . C A 628 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.44;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:661,72,0 chrXI 137272 . G A 687 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.62;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:720,78,0 chrXI 137300 . C T 762 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.21;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:87:795,87,0 chrXI 137342 . C G 902 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.04;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:935,105,0 chrXI 137391 . T A 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.979;QD=23.46;ReadPosRankSum=1.281;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1112,117,0 chrXI 137449 . G A 691 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.18;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:724,78,0 chrXI 137500 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.46;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:831,93,0 chrXI 138154 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.43;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1805,192,0 chrXI 138642 . A G 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=80;Dels=0.00;FS=6.136;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.551;QD=20.61;ReadPosRankSum=2.911;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:3,76:80:99:1682,189,0 chrXI 138643 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.78;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1787,189,0 chrXI 138867 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1816,192,0 chrXI 139006 . T A 1288 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.52;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1321,141,0 chrXI 139012 . A G 1102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.95;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1135,126,0 chrXI 139846 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.05;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2159,237,0 chrXI 140833 . T G 1577 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.00;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1610,183,0 chrXI 141122 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.7450;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.44;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1716,192,0 chrXI 141217 . A C 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.775;QD=19.59;ReadPosRankSum=1.699;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2110,240,0 chrXI 141227 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.76;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1759,201,0 chrXI 141291 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.45;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1250,144,0 chrXI 141507 . A T 897 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=13.39;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:930,111,0 chrXI 141805 . G C 1182 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.64;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1215,135,0 chrXI 141809 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=17.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1137,126,0 chrXI 142268 . A T 1038 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.87;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1071,120,0 chrXI 142535 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.940;DP=55;Dels=0.00;FS=14.496;HaplotypeScore=8.6047;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.509;QD=16.11;ReadPosRankSum=-0.344;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:6,48:55:46:919,46,0 chrXI 142986 . A G 1293 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.20;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1326,150,0 chrXI 143177 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.5033;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.22;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1266,141,0 chrXI 143668 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.89;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1910,207,0 chrXI 143713 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.77;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1992,210,0 chrXI 143731 . A T 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.325;QD=18.87;ReadPosRankSum=0.917;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1656,180,0 chrXI 144069 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1102;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.63;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1937,219,0 chrXI 144520 . A T 955 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.90;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:988,108,0 chrXI 144571 . T C 1127 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.08;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1160,129,0 chrXI 144676 . T C 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=7.8661;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=0.736;QD=2.23;ReadPosRankSum=-0.510;SB=-1.697e+01 GT:AD:DP:GQ:PL 1/1:13,4:17:9:70,9,0 chrXI 144682 . T C 67.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.943;DP=25;Dels=0.00;FS=3.862;HaplotypeScore=12.4887;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=2.420;QD=2.70;ReadPosRankSum=-2.964;SB=-4.851e+01 GT:AD:DP:GQ:PL 1/1:13,12:25:12:100,12,0 chrXI 144697 . T C 280.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;DP=47;Dels=0.00;FS=8.834;HaplotypeScore=14.6991;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=0;MQRankSum=4.030;QD=5.96;ReadPosRankSum=-0.528;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:16,31:47:31:310,0,31 chrXI 144727 . T C 631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.861;DP=67;Dels=0.00;FS=6.360;HaplotypeScore=30.6067;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=3.940;QD=9.42;ReadPosRankSum=3.632;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:14,53:67:75:664,75,0 chrXI 144853 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.402;DP=167;Dels=0.00;FS=98.574;HaplotypeScore=70.9592;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=0;MQRankSum=-7.000;QD=0.29;ReadPosRankSum=-1.422;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,49:167:79:79,0,1398 chrXI 144856 . A T 226.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.011;DP=167;Dels=0.00;FS=99.508;HaplotypeScore=52.5962;MLEAC=1;MLEAF=0.500;MQ=45.02;MQ0=0;MQRankSum=-6.351;QD=1.35;ReadPosRankSum=0.106;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:118,49:167:99:256,0,1306 chrXI 144857 . A T 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;DP=162;Dels=0.00;FS=96.155;HaplotypeScore=50.8181;MLEAC=1;MLEAF=0.500;MQ=44.86;MQ0=0;MQRankSum=-7.231;QD=1.46;ReadPosRankSum=0.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:113,49:162:99:266,0,1332 chrXI 144862 . T C 221.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.821;DP=169;Dels=0.00;FS=49.716;HaplotypeScore=19.2713;MLEAC=1;MLEAF=0.500;MQ=44.04;MQ0=0;MQRankSum=-7.754;QD=1.31;ReadPosRankSum=-1.753;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:102,67:169:99:251,0,1179 chrXI 144865 . T C 232.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.029;DP=166;Dels=0.00;FS=57.937;HaplotypeScore=14.5392;MLEAC=1;MLEAF=0.500;MQ=43.01;MQ0=0;MQRankSum=-6.104;QD=1.40;ReadPosRankSum=-1.627;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:95,68:166:99:262,0,1145 chrXI 144889 . T C 734.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.474;DP=177;Dels=0.00;FS=7.992;HaplotypeScore=9.7123;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=0;MQRankSum=-5.069;QD=4.15;ReadPosRankSum=-1.757;SB=-1.030e+03 GT:AD:DP:GQ:PL 0/1:52,125:177:99:764,0,691 chrXI 144916 . C T 1005.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.277;DP=171;Dels=0.00;FS=24.565;HaplotypeScore=19.0517;MLEAC=1;MLEAF=0.500;MQ=44.15;MQ0=0;MQRankSum=1.699;QD=5.88;ReadPosRankSum=6.315;SB=-9.150e+02 GT:AD:DP:GQ:PL 0/1:76,95:171:99:1035,0,636 chrXI 144928 . G A 265.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;DP=139;Dels=0.00;FS=2.311;HaplotypeScore=16.8386;MLEAC=1;MLEAF=0.500;MQ=45.27;MQ0=0;MQRankSum=-4.943;QD=1.91;ReadPosRankSum=-9.259;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:84,55:139:99:295,0,1120 chrXI 145622 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.43;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1216,132,0 chrXI 145814 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.565;QD=23.82;ReadPosRankSum=2.367;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1462,162,0 chrXI 146436 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.015;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.7974;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=2.146;QD=19.90;ReadPosRankSum=2.267;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1645,189,0 chrXI 146650 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.883;QD=21.93;ReadPosRankSum=2.383;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1656,186,0 chrXI 146689 . A T 1784 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=20.74;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1817,195,0 chrXI 146690 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=87;Dels=0.00;FS=2.768;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-1.159;QD=18.44;ReadPosRankSum=2.098;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:2,82:87:99:1637,183,0 chrXI 146730 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.38;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1283,144,0 chrXI 146743 . A T 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=69;Dels=0.00;FS=11.565;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-0.309;QD=16.59;ReadPosRankSum=2.898;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1178,126,0 chrXI 146760 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.41;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1426,156,0 chrXI 146875 . T C 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;MQRankSum=1.619;QD=16.55;ReadPosRankSum=1.619;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1556,171,0 chrXI 146915 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=55.5041;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=14.31;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1249,144,0 chrXI 146936 . C T 636 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=11.36;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:78:669,78,0 chrXI 147072 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.47;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1513,165,0 chrXI 147232 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=4.095;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-0.602;QD=19.60;ReadPosRankSum=1.696;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1895,210,0 chrXI 147261 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=20.57;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1699,180,0 chrXI 147343 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.20;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1771,195,0 chrXI 147354 . G T 1897 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.86;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1930,213,0 chrXI 147476 . G C 1271 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.18;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1304,147,0 chrXI 147954 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.67;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1862,201,0 chrXI 148063 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1801,198,0 chrXI 148157 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.041;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.977;QD=20.53;ReadPosRankSum=2.381;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1511,171,0 chrXI 148284 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.86;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:995,111,0 chrXI 148629 . G T 934 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.87;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:967,105,0 chrXI 148801 . T C 951 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.29;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:984,114,0 chrXI 148894 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:99:1086,120,0 chrXI 149332 . G T 1828 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.85;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1861,201,0 chrXI 149388 . A C 1951 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.68;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1984,222,0 chrXI 149458 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.99;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1792,207,0 chrXI 149575 . G T 2518 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.48;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2551,276,0 chrXI 150032 . G A 2541 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2574,291,0 chrXI 150247 . A T 1849 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.75;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1882,204,0 chrXI 150307 . G A 2117 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2150,237,0 chrXI 150866 . C T 797 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.53;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:830,90,0 chrXI 150922 . G T 484 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.36;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:54:517,54,0 chrXI 151229 . G T 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.599;QD=24.40;ReadPosRankSum=0.666;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1302,135,0 chrXI 151386 . A C 868 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.19;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:901,105,0 chrXI 151420 . A T 792 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.29;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:90:825,90,0 chrXI 151866 . G T 1299 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.10;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1332,144,0 chrXI 152294 . A G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=89;Dels=0.00;FS=3.597;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.936;QD=20.49;ReadPosRankSum=1.573;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1857,207,0 chrXI 152571 . T G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=3.285;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.414;QD=21.42;ReadPosRankSum=1.661;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2154,237,0 chrXI 152632 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2794,300,0 chrXI 153052 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.08;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1337,141,0 chrXI 153490 . T C 1160 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.35;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1193,135,0 chrXI 153756 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.554;QD=21.01;ReadPosRankSum=1.625;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2071,234,0 chrXI 154732 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.07;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1578,180,0 chrXI 154842 . T C 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;DP=110;Dels=0.00;FS=13.612;HaplotypeScore=6.2957;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.213;QD=17.58;ReadPosRankSum=2.936;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1967,216,0 chrXI 155185 . A T 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.791;QD=22.40;ReadPosRankSum=1.689;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1847,195,0 chrXI 155453 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.98;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2078,222,0 chrXI 155819 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.12;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1980,213,0 chrXI 156045 . T C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.393;QD=23.80;ReadPosRankSum=1.686;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1842,188,0 chrXI 156351 . G T 1696 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.20;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1729,189,0 chrXI 156730 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.09;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1741,195,0 chrXI 156909 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=2.944;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.723;QD=20.40;ReadPosRankSum=2.380;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1461,165,0 chrXI 157011 . T A 1400 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1433,153,0 chrXI 157584 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.04;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2037,225,0 chrXI 157764 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.89;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1777,198,0 chrXI 157956 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.43;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1872,204,0 chrXI 158228 . A T 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.453;QD=20.22;ReadPosRankSum=1.679;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1347,144,0 chrXI 158497 . G A 791 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.29;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:824,90,0 chrXI 158549 . T G 857 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.85;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:890,102,0 chrXI 158889 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.91;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1601,180,0 chrXI 159489 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.37;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1129,126,0 chrXI 159495 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1169,126,0 chrXI 159705 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.18;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:898,96,0 chrXI 159741 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.81;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1240,135,0 chrXI 159923 . T C 946 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=15.02;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:979,108,0 chrXI 160401 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.52;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1087,126,0 chrXI 160661 . T C 2435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.940;QD=23.19;ReadPosRankSum=1.699;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2468,270,0 chrXI 160799 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.82;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1722,195,0 chrXI 161178 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.213;QD=23.65;ReadPosRankSum=1.675;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1499,165,0 chrXI 161493 . G C 3314.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=24.19;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:3314,369,0 chrXI 161769 . C T 2813 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.29;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2846,300,0 chrXI 162073 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.72;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:72:99:1381,159,0 chrXI 162110 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.11;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1371,153,0 chrXI 162580 . G T 420 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=12.73;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:48:453,48,0 chrXI 162583 . G A 470 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=13.82;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:54:503,54,0 chrXI 162589 . T G 422 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=12.79;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:455,51,0 chrXI 162595 . A G 435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=1.444;QD=12.08;ReadPosRankSum=1.636;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:54:468,54,0 chrXI 162828 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.10;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1138,123,0 chrXI 162874 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.42;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:954,102,0 chrXI 162881 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.942;QD=16.93;ReadPosRankSum=1.672;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:998,111,0 chrXI 163460 . T G 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=4.841;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.624;QD=14.59;ReadPosRankSum=1.704;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:1871,216,0 chrXI 163461 . G A 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.705;QD=16.16;ReadPosRankSum=1.132;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2102,225,0 chrXI 163473 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=15.76;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2287,243,0 chrXI 164020 . G T 2709 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.22;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2742,303,0 chrXI 164892 . C A 1364 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3488;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;MQRankSum=1.435;QD=18.94;ReadPosRankSum=1.237;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,69:72:99:1397,153,0 chrXI 164907 . A G 1391 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1424,168,0 chrXI 165249 . C T 2793 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.48;SB=-1.704e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2826,303,0 chrXI 165315 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=1.165;QD=19.75;ReadPosRankSum=1.701;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2205,246,0 chrXI 165363 . A T 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=16.1567;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.327;QD=17.91;ReadPosRankSum=1.695;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1717,183,0 chrXI 165532 . C T 3599.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=18.1831;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.81;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3599,393,0 chrXI 165685 . T G 2253 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.66;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2286,258,0 chrXI 165712 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.27;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1655,180,0 chrXI 165754 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.68;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1568,168,0 chrXI 166469 . T A 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=13.395;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.631;QD=16.62;ReadPosRankSum=2.407;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1944,213,0 chrXI 166502 . G A 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.558;DP=124;Dels=0.00;FS=4.807;HaplotypeScore=8.2944;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.675;QD=17.62;ReadPosRankSum=1.560;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2218,240,0 chrXI 166543 . C T 2250 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.0776;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.64;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2283,255,0 chrXI 166687 . A G 1479 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.49;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1512,168,0 chrXI 166774 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.97;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1311,144,0 chrXI 167254 . T C 501 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=12.22;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:60:534,60,0 chrXI 167261 . A G 580 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=13.49;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:69:613,69,0 chrXI 167584 . C T 1202 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.72;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1235,132,0 chrXI 167588 . C G 1163 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.07;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1196,135,0 chrXI 168140 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1658,180,0 chrXI 169345 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=9.8493;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.97;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1388,150,0 chrXI 170362 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=4.393;HaplotypeScore=11.2802;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.323;QD=21.15;ReadPosRankSum=1.701;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2360,264,0 chrXI 170581 . G A 2657 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.33;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2690,288,0 chrXI 170773 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.43;SB=-1.505e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2300,252,0 chrXI 170827 . A G 2582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.575;HaplotypeScore=2.5894;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.465;QD=20.99;ReadPosRankSum=1.676;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2615,288,0 chrXI 171027 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=15.95;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1213,141,0 chrXI 171082 . T C 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=5.863;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.561;QD=19.56;ReadPosRankSum=1.689;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1617,180,0 chrXI 171261 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.4810;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.83;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2500,264,0 chrXI 171742 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.25;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1754,195,0 chrXI 171961 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.13;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1100,117,0 chrXI 172015 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3172;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.204;QD=20.47;ReadPosRankSum=1.681;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1425,162,0 chrXI 172122 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.44;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1934,216,0 chrXI 172151 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.14;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1893,210,0 chrXI 172369 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.57;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1780,192,0 chrXI 172781 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=96;Dels=0.00;FS=5.262;HaplotypeScore=8.1487;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.126;QD=21.67;ReadPosRankSum=2.864;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:3,93:96:99:2113,234,0 chrXI 173315 . G C 1647 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.30;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1680,189,0 chrXI 173321 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.00;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1762,189,0 chrXI 173393 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.79;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1611,174,0 chrXI 173411 . G T 1691 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.61;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1724,192,0 chrXI 173878 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.64;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1250,132,0 chrXI 173880 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=17.33;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1194,132,0 chrXI 173977 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=8.4016;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.15;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1281,144,0 chrXI 174085 . G A 608 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.27;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:641,72,0 chrXI 174125 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.81;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1375,147,0 chrXI 174180 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.19;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2120,228,0 chrXI 174419 . G C 1490 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1523,174,0 chrXI 174485 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=17.91;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1502,168,0 chrXI 174509 . C T 1926 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.26;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1959,213,0 chrXI 174593 . T C 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=120;Dels=0.00;FS=6.021;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.149;QD=18.04;ReadPosRankSum=1.702;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,115:120:99:2198,246,0 chrXI 174833 . T A 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.767;QD=19.73;ReadPosRankSum=1.557;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1592,174,0 chrXI 175391 . T G 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=3.925;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.118;QD=18.81;ReadPosRankSum=1.688;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1557,177,0 chrXI 175397 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.84;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1407,162,0 chrXI 175954 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.73;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1256,144,0 chrXI 175999 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1468,165,0 chrXI 176128 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.40;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2631,288,0 chrXI 176335 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=15.87;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1144,126,0 chrXI 176521 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=88;Dels=0.00;FS=5.261;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.943;QD=20.32;ReadPosRankSum=2.828;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1821,201,0 chrXI 176572 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=17.91;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1681,183,0 chrXI 176582 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=16.06;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1591,177,0 chrXI 177551 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.34;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2047,231,0 chrXI 179179 . A G 788 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=36.4586;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:93:821,93,0 chrXI 179200 . T A 739 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:81:772,81,0 chrXI 179275 . T G 563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-1.733;QD=20.11;ReadPosRankSum=1.609;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:66:596,66,0 chrXI 179289 . T C 569 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.963;QD=21.07;ReadPosRankSum=1.605;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:69:602,69,0 chrXI 179314 . G T 787 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:87:820,87,0 chrXI 179372 . A G 501 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.77;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:534,60,0 chrXI 179405 . T C 499 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.060;QD=17.21;ReadPosRankSum=1.614;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:1,28:29:60:532,60,0 chrXI 179422 . T C 709 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:81:742,81,0 chrXI 179509 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.40;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1303,138,0 chrXI 179688 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.69;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1595,177,0 chrXI 179723 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.76;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1513,162,0 chrXI 179928 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.80;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1510,168,0 chrXI 179949 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.93;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1519,162,0 chrXI 180074 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8007;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.25;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1167,126,0 chrXI 180128 . A G 716 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.05;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:749,84,0 chrXI 180155 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.02;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:75:694,75,0 chrXI 180215 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1132,126,0 chrXI 180574 . T C 881 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.58;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:914,105,0 chrXI 180610 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.95;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1433,159,0 chrXI 180760 . A T 1941 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1974,219,0 chrXI 182533 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2512,282,0 chrXI 182568 . C T 2708 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.55;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2741,294,0 chrXI 182867 . A T 2488 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.02;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2521,273,0 chrXI 182950 . T G 2083 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.40;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2116,240,0 chrXI 183323 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.81;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2468,270,0 chrXI 183657 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1852,198,0 chrXI 183848 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.378;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.124;QD=23.07;ReadPosRankSum=1.685;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1763,198,0 chrXI 184604 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.80;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2510,282,0 chrXI 184691 . T G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.5336;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.678;QD=23.15;ReadPosRankSum=1.624;SB=-4.601e+01 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1538,180,0 chrXI 184772 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=26.23;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1895,201,0 chrXI 184809 . C T 2531 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.57;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2564,273,0 chrXI 185846 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1629,177,0 chrXI 186196 . A T 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.26;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1613,177,0 chrXI 186668 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.96;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1703,192,0 chrXI 186950 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1473,165,0 chrXI 187243 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.23;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2034,219,0 chrXI 187398 . A G 1522 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.02;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1555,174,0 chrXI 188443 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.27;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2141,231,0 chrXI 188539 . T A 1499 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5231;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.64;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1532,162,0 chrXI 188557 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.757;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.501;QD=17.37;ReadPosRankSum=1.687;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1353,153,0 chrXI 188706 . G A 1032 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=13.95;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1065,120,0 chrXI 188875 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.45;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1663,177,0 chrXI 188916 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.440;QD=21.21;ReadPosRankSum=1.681;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1454,162,0 chrXI 189011 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.39;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1723,186,0 chrXI 189250 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.21;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1038,111,0 chrXI 189718 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.99;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1712,192,0 chrXI 189907 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.87;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1411,150,0 chrXI 189929 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.10;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1489,159,0 chrXI 190193 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.98;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1352,153,0 chrXI 190441 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.95;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1398,150,0 chrXI 190594 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.25;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1274,147,0 chrXI 190747 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.81;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1240,141,0 chrXI 190915 . T C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=63;Dels=0.00;FS=6.394;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.391;QD=18.54;ReadPosRankSum=2.368;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:2,58:63:99:1201,132,0 chrXI 191290 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.20;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2492,276,0 chrXI 191390 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.98;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1292,141,0 chrXI 191416 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.83;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:807,90,0 chrXI 191510 . G T 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.84;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,123,0 chrXI 191520 . T C 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.395;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.851;QD=16.62;ReadPosRankSum=1.674;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1030,114,0 chrXI 191609 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.73;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2417,267,0 chrXI 191928 . A G 1741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=4.184;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.276;QD=22.32;ReadPosRankSum=1.687;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1774,198,0 chrXI 192038 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.79;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1280,138,0 chrXI 192111 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.3777;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.82;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1298,147,0 chrXI 192187 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1517,165,0 chrXI 192706 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=17.92;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1180,135,0 chrXI 192713 . C T 1148 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=17.66;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1181,129,0 chrXI 192718 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=15.95;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:990,111,0 chrXI 192810 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.64;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1113,120,0 chrXI 193196 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.881;QD=21.00;ReadPosRankSum=1.672;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1230,141,0 chrXI 193314 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=14.22;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1128,129,0 chrXI 193449 . T A 1877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=85;Dels=0.00;FS=7.057;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.246;QD=22.08;ReadPosRankSum=2.276;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1910,201,0 chrXI 193550 . A T 2213 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=24.87;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2246,243,0 chrXI 193727 . A G 1955 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.48;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1988,225,0 chrXI 193814 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=16.41;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1198,135,0 chrXI 193829 . T C 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=78;Dels=0.00;FS=8.048;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.411;QD=16.62;ReadPosRankSum=2.318;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:3,73:78:99:1329,150,0 chrXI 194175 . C G 264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;DP=69;Dels=0.00;FS=85.134;HaplotypeScore=10.7487;MLEAC=1;MLEAF=0.500;MQ=52.16;MQ0=0;MQRankSum=0.095;QD=3.83;ReadPosRankSum=-4.371;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:24,44:69:99:294,0,255 chrXI 194564 . A C 1757 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.89;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1790,201,0 chrXI 194709 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.30;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1332,144,0 chrXI 195050 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.77;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1508,165,0 chrXI 195199 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.72;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1358,153,0 chrXI 195226 . A C 1780 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.35;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1813,204,0 chrXI 195269 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.90;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2805,309,0 chrXI 195507 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.34;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1676,183,0 chrXI 195729 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.23;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1901,210,0 chrXI 195753 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=6.970;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-1.436;QD=18.27;ReadPosRankSum=2.281;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1367,156,0 chrXI 195771 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.38;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1163,126,0 chrXI 195825 . A G 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=1.072;QD=19.10;ReadPosRankSum=1.677;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1236,141,0 chrXI 196269 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=1;QD=16.05;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1365,153,0 chrXI 196346 . T A 2951 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.6635;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.61;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2984,339,0 chrXI 196712 . T C 2902 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.72;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:2935,321,0 chrXI 197500 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.24;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1590,177,0 chrXI 198458 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.62;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1163,129,0 chrXI 198833 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.88;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1585,168,0 chrXI 199097 . T G 1465 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.54;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1498,171,0 chrXI 199184 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.21;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1654,183,0 chrXI 199373 . A G 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.342;QD=19.15;ReadPosRankSum=1.683;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1393,156,0 chrXI 199394 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.03;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1375,150,0 chrXI 199443 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.39;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1265,141,0 chrXI 199502 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.23;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1222,129,0 chrXI 199547 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.93;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1456,162,0 chrXI 199676 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1137,126,0 chrXI 199802 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.21;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1240,135,0 chrXI 200009 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.81;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1669,189,0 chrXI 200056 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.85;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1366,156,0 chrXI 200186 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.8544;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.98;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1152,123,0 chrXI 200248 . T C 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.604;QD=20.18;ReadPosRankSum=1.668;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,53:56:99:1163,132,0 chrXI 200367 . A C 828 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.62;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:861,99,0 chrXI 200384 . T C 643 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=25.7938;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=17.38;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:676,75,0 chrXI 200402 . G A 446 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=14.87;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:51:479,51,0 chrXI 200506 . A G 550 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=14.86;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:583,66,0 chrXI 200539 . A G 363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=1.191;QD=11.34;ReadPosRankSum=1.625;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:45:396,45,0 chrXI 200552 . C T 339 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=11.69;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:372,42,0 chrXI 200580 . G A 326 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.64;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:359,39,0 chrXI 200581 . A G 316 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.29;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:349,39,0 chrXI 200609 . C T 473 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.77;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:506,57,0 chrXI 200616 . G C 478 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=15.93;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:511,57,0 chrXI 200667 . T C 633 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.62;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:666,75,0 chrXI 200708 . G A 451 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.61;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:484,54,0 chrXI 200709 . T C 397 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.90;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:48:430,48,0 chrXI 200767 . T A 414 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=18.82;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:48:447,48,0 chrXI 200776 . C A 389 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.68;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:422,45,0 chrXI 200798 . T C 297 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=14.85;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:330,39,0 chrXI 200908 . G A 727 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=16.52;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:760,93,0 chrXI 201270 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=15.09;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1240,132,0 chrXI 201274 . T C 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-1.694;QD=12.23;ReadPosRankSum=1.655;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1134,126,0 chrXI 201376 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.053;QD=19.88;ReadPosRankSum=1.705;SB=-1.547e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2618,297,0 chrXI 201685 . T C 1693 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.02;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1726,195,0 chrXI 201727 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.247;QD=20.35;ReadPosRankSum=1.697;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2027,231,0 chrXI 202162 . T C 558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=3.745;HaplotypeScore=37.2303;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;MQRankSum=-0.731;QD=12.40;ReadPosRankSum=1.655;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:66:591,66,0 chrXI 202180 . T A 479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=80.0375;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;MQRankSum=0.163;QD=8.71;ReadPosRankSum=1.667;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:57:512,57,0 chrXI 202194 . T C 625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=2.668;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;MQRankSum=-0.425;QD=10.25;ReadPosRankSum=2.369;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:75:658,75,0 chrXI 202215 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=13.31;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:965,108,0 chrXI 202261 . C A 1377 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=19.96;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1410,147,0 chrXI 202274 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=16.44;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1085,120,0 chrXI 202311 . T G 908 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=21.62;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:941,108,0 chrXI 202339 . A G 787 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=23.85;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:820,93,0 chrXI 202352 . C T 808 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=25.25;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:841,93,0 chrXI 202368 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=24.45;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:840,93,0 chrXI 202417 . G C 623 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=18.88;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:75:656,75,0 chrXI 202524 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=21.67;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2135,240,0 chrXI 202575 . G T 1671 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=21.42;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1704,189,0 chrXI 202593 . A G 1017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;MQRankSum=0.035;QD=20.76;ReadPosRankSum=1.662;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1050,117,0 chrXI 202594 . T A 1027 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=21.40;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1060,114,0 chrXI 202631 . G C 154.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=12.84;SB=-8.304e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:187,21,0 chrXI 203085 . A G 336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.361;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;MQRankSum=-1.898;QD=12.44;ReadPosRankSum=2.083;SB=-1.645e+02 GT:AD:DP:GQ:PL 1/1:2,25:27:42:369,42,0 chrXI 203086 . G C 345 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=13.27;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:42:378,42,0 chrXI 203999 . G C 519 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=13.31;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:552,63,0 chrXI 204122 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.15;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1267,141,0 chrXI 204194 . A T 2909 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.5297;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.45;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2942,321,0 chrXI 204350 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.10;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2044,222,0 chrXI 205304 . C A 1873 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1906,213,0 chrXI 205481 . G T 804 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.62;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:837,90,0 chrXI 206279 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.844;QD=19.62;ReadPosRankSum=1.599;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1563,177,0 chrXI 206393 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9874;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.92;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2646,288,0 chrXI 206548 . C G 1729 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.7007;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.00;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1762,198,0 chrXI 206732 . G A 1930 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.10;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1963,219,0 chrXI 206804 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.98;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2078,219,0 chrXI 206966 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.12;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2018,228,0 chrXI 207105 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7862;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2170,246,0 chrXI 207429 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.9819;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.48;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2331,249,0 chrXI 207495 . C A 1583 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.29;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1616,183,0 chrXI 207533 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.38;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1661,177,0 chrXI 207981 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=13.29;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:538,60,0 chrXI 208114 . T C 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.829;QD=21.41;ReadPosRankSum=1.506;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1018,114,0 chrXI 208115 . A T 1026 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.37;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1059,114,0 chrXI 208226 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.78;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1180,132,0 chrXI 208639 . C A 1558 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.23;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1591,171,0 chrXI 208745 . A G 2274 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.08;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2307,267,0 chrXI 208852 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.689;QD=22.86;ReadPosRankSum=1.689;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1885,213,0 chrXI 208957 . T C 2519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.840;DP=133;Dels=0.00;FS=20.274;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=2.016;QD=18.94;ReadPosRankSum=4.037;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:6,126:133:99:2552,269,0 chrXI 209212 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.20;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2053,222,0 chrXI 209386 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.69;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2687,288,0 chrXI 209449 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.12;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1437,162,0 chrXI 209467 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5133;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.04;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1311,144,0 chrXI 209488 . A G 1208 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.30;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1241,141,0 chrXI 209983 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.447;QD=19.86;ReadPosRankSum=2.307;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1423,159,0 chrXI 210103 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.12;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1998,228,0 chrXI 210150 . C G 1620 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1653,186,0 chrXI 210184 . C A 1394 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1427,153,0 chrXI 210799 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.74;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2882,315,0 chrXI 211000 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.11;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1663,186,0 chrXI 211408 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.0341;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.60;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2020,219,0 chrXI 211921 . A G 2278 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2311,255,0 chrXI 211999 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1029;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.97;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2193,234,0 chrXI 213004 . C T 2018 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=25.22;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2051,219,0 chrXI 213314 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6785;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=21.35;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2317,258,0 chrXI 213351 . T G 2232 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.93;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2265,255,0 chrXI 213360 . A G 2163 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.41;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2196,240,0 chrXI 213389 . T G 1962 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0047;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.68;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:111:99:1995,222,0 chrXI 213499 . C A 961 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.47;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:994,108,0 chrXI 213521 . T C 889 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.43;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:922,102,0 chrXI 213549 . T A 839 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.83;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:872,96,0 chrXI 213597 . T G 1095 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=55.6133;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.64;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1128,126,0 chrXI 213630 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=15.00;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1128,120,0 chrXI 213633 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=14.65;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1132,120,0 chrXI 213680 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.43;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1565,171,0 chrXI 213714 . A G 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=6.081;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=0.546;QD=22.71;ReadPosRankSum=1.685;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1691,186,0 chrXI 214034 . G C 1558 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.97;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1591,177,0 chrXI 214123 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=16.25;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1317,147,0 chrXI 214124 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.01;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1360,147,0 chrXI 214237 . G T 1287 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.11;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1320,150,0 chrXI 214288 . T C 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=6.864;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.815;QD=15.06;ReadPosRankSum=1.528;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1057,117,0 chrXI 214293 . C A 1168 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.18;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1201,129,0 chrXI 214537 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.46;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1342,147,0 chrXI 215535 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1393,159,0 chrXI 215651 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=3.002;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.894;QD=22.31;ReadPosRankSum=2.381;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1617,180,0 chrXI 215962 . A G 2324 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2357,261,0 chrXI 216310 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.31;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1663,189,0 chrXI 216378 . C T 1799 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.49;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1832,201,0 chrXI 216553 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.04;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1556,177,0 chrXI 216646 . T C 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.4664;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.289;QD=19.31;ReadPosRankSum=-0.289;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:960,111,0 chrXI 216709 . A C 1379 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.42;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1412,159,0 chrXI 216943 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.28;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1077,114,0 chrXI 216973 . A G 946 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.00;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:979,108,0 chrXI 216999 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.16;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1274,141,0 chrXI 217457 . A T 1480 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.76;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1513,165,0 chrXI 217814 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.8747;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.22;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1571,177,0 chrXI 218542 . T A 1954 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.96;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1987,213,0 chrXI 218544 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.30;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1971,213,0 chrXI 218804 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.216;QD=16.36;ReadPosRankSum=1.659;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:90:802,90,0 chrXI 218948 . T A 1081 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.64;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1114,120,0 chrXI 218957 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.11;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:974,108,0 chrXI 218976 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.41;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1074,123,0 chrXI 219042 . T G 1180 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.85;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1213,135,0 chrXI 219155 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.86;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1417,153,0 chrXI 219404 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.42;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1704,183,0 chrXI 219454 . G C 1974 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.95;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2007,225,0 chrXI 219481 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.27;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1881,204,0 chrXI 219558 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.976;QD=20.36;ReadPosRankSum=1.692;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1825,210,0 chrXI 219640 . T G 2141 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.85;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2174,243,0 chrXI 219692 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=7.7306;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.06;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1315,141,0 chrXI 219742 . A G 1245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=69;Dels=0.01;FS=5.864;HaplotypeScore=9.9638;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.591;QD=18.04;ReadPosRankSum=2.895;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:3,64:68:99:1278,141,0 chrXI 219762 . A T 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.562;QD=21.72;ReadPosRankSum=1.675;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1358,150,0 chrXI 219829 . G C 1157 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.66;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1190,132,0 chrXI 219865 . A C 945 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.90;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:978,108,0 chrXI 220041 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.80;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1766,186,0 chrXI 220092 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.45;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1956,219,0 chrXI 220166 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.74;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1695,183,0 chrXI 220287 . A G 2177 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6952;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.21;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2210,255,0 chrXI 220315 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.32;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1499,171,0 chrXI 220323 . C A 1371 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.93;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1404,162,0 chrXI 220647 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=3.048;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.716;QD=21.71;ReadPosRankSum=2.324;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:2182,246,0 chrXI 220701 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.43;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1199,138,0 chrXI 220785 . A T 129.13 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=8.07;SB=-7.914e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:18:162,18,0 chrXI 220788 . T C 143.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=8.94;SB=-1.051e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:176,21,0 chrXI 220881 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.82;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:891,96,0 chrXI 221112 . A T 1060 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.85;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1093,117,0 chrXI 221472 . A C 2475 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2508,279,0 chrXI 221820 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.4012;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.98;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2211,243,0 chrXI 222020 . A T 672 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=16.80;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:705,75,0 chrXI 222033 . A G 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=51;Dels=0.00;FS=3.372;HaplotypeScore=4.0078;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.970;QD=16.27;ReadPosRankSum=1.663;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:863,99,0 chrXI 222271 . T C 1221 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.69;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:62:99:1254,141,0 chrXI 222981 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.14;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1545,165,0 chrXI 223233 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.03;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1151,129,0 chrXI 223330 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=10.0140;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=20.91;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1225,138,0 chrXI 223839 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.28;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1872,201,0 chrXI 224066 . T A 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.84;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1933,210,0 chrXI 224495 . G C 1261 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.76;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1294,144,0 chrXI 224853 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.97;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1451,162,0 chrXI 225609 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.90;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1350,150,0 chrXI 225834 . A T 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.947;QD=19.32;ReadPosRankSum=1.178;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1482,165,0 chrXI 225906 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3787;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=17.58;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1404,150,0 chrXI 225909 . T A 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.617;QD=16.58;ReadPosRankSum=0.913;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1343,147,0 chrXI 226095 . G A 2212 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.90;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2245,249,0 chrXI 226518 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.33;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2147,240,0 chrXI 226531 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.5441;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.83;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2366,255,0 chrXI 226659 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.276;QD=20.19;ReadPosRankSum=1.632;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1426,159,0 chrXI 226854 . T C 2835 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1528;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.86;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2868,324,0 chrXI 227625 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.67;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1666,177,0 chrXI 228339 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.00;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2427,261,0 chrXI 228411 . C T 3446.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.51;SB=-1.932e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3446,378,0 chrXI 228576 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7468;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.99;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1409,162,0 chrXI 229432 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.37;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1642,174,0 chrXI 229656 . A G 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.194;QD=22.23;ReadPosRankSum=2.380;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1589,174,0 chrXI 229929 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1083,117,0 chrXI 230391 . A G 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.966;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.742;QD=22.86;ReadPosRankSum=1.694;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2113,237,0 chrXI 230442 . G T 1819 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.44;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1852,201,0 chrXI 230745 . T A 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=3.596;HaplotypeScore=7.9740;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.589;QD=21.88;ReadPosRankSum=1.698;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2309,246,0 chrXI 230876 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.13;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1892,210,0 chrXI 230894 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.90;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1726,192,0 chrXI 230930 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.45;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1663,183,0 chrXI 231227 . C T 660 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.62;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:72:693,72,0 chrXI 232567 . T C 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.02;FS=3.945;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;MQRankSum=0.894;QD=14.03;ReadPosRankSum=1.676;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:917,102,0 chrXI 232583 . A G 875 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=13.26;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:908,102,0 chrXI 232838 . T C 943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.598;QD=17.15;ReadPosRankSum=1.669;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:976,108,0 chrXI 232839 . C T 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.031;QD=18.11;ReadPosRankSum=1.543;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1029,111,0 chrXI 233135 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.42;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1425,156,0 chrXI 233252 . T G 1872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.123;QD=20.57;ReadPosRankSum=1.694;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1905,219,0 chrXI 233322 . T C 1372 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1405,159,0 chrXI 233498 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.53;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1819,210,0 chrXI 234119 . G A 478 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.78;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:57:511,57,0 chrXI 234252 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=17.8692;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.95;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:951,105,0 chrXI 234299 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.77;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:69:626,69,0 chrXI 234378 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.82;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1448,156,0 chrXI 234425 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.97;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1423,153,0 chrXI 234821 . T C 3082 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=15.1409;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.989;QD=23.17;ReadPosRankSum=2.413;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3115,351,0 chrXI 235014 . T G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=3.039;HaplotypeScore=6.6257;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-1.270;QD=17.42;ReadPosRankSum=2.398;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1705,189,0 chrXI 235027 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7033;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.17;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1733,186,0 chrXI 235115 . G C 2523 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.69;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2556,282,0 chrXI 235274 . C G 1774 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.39;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1807,207,0 chrXI 235565 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.13;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1618,177,0 chrXI 235797 . C A 1590 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1623,174,0 chrXI 236044 . T A 2247 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.65;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2280,255,0 chrXI 236078 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.54;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1368,153,0 chrXI 236129 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.71;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1804,195,0 chrXI 236254 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.30;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1596,183,0 chrXI 236405 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.57;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1555,168,0 chrXI 236483 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0874;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.24;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1602,180,0 chrXI 236875 . G T 1262 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.03;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1295,144,0 chrXI 237733 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.20;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1941,213,0 chrXI 238513 . C G 1516 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.06;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1549,177,0 chrXI 239182 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1272,150,0 chrXI 240233 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.9252;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.23;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2198,234,0 chrXI 240409 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.92;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1958,216,0 chrXI 240637 . G A 2196 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.96;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2229,243,0 chrXI 241104 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.67;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1980,210,0 chrXI 241418 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.70;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1471,156,0 chrXI 241425 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.53;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1441,159,0 chrXI 241707 . T G 1032 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.20;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1065,120,0 chrXI 242387 . A G 2606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.077;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.866;QD=19.59;ReadPosRankSum=1.680;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2639,297,0 chrXI 242705 . C A 1670 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.58;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1703,183,0 chrXI 243020 . G A 606 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.44;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:69:639,69,0 chrXI 243364 . G A 1269 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.88;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1302,138,0 chrXI 243556 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.70;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:923,102,0 chrXI 243712 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.01;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1734,189,0 chrXI 243724 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.63;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1728,186,0 chrXI 243754 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.21;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1818,192,0 chrXI 244570 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.03;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1694,183,0 chrXI 245907 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.95;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1208,141,0 chrXI 246336 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=12.0362;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.54;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1909,207,0 chrXI 247464 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7964;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.51;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1555,168,0 chrXI 247882 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=22.05;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1665,180,0 chrXI 247896 . A G 1177 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;MQRankSum=0.200;QD=17.31;ReadPosRankSum=1.942;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1210,118,0 chrXI 247899 . G A 1103 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=4.7327;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=17.23;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1136,129,0 chrXI 247900 . A T 1113 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=4.7327;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=17.39;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1146,129,0 chrXI 247999 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.71;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1255,144,0 chrXI 248096 . T A 1688 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.51;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1721,186,0 chrXI 248307 . G C 663 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=9.08;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:78:696,78,0 chrXI 248310 . C A 669 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=11.7009;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=9.42;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:75:702,75,0 chrXI 248487 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.77;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1835,204,0 chrXI 249447 . T A 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.892;QD=19.18;ReadPosRankSum=1.680;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1299,147,0 chrXI 249660 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.087;QD=19.24;ReadPosRankSum=1.698;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1995,222,0 chrXI 249723 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.48;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1241,138,0 chrXI 249846 . C T 773 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=15.16;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:806,93,0 chrXI 249855 . T C 828 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=15.62;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:96:861,96,0 chrXI 249882 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=12.43;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:692,78,0 chrXI 249915 . T C 836 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=16.08;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:96:869,96,0 chrXI 249960 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.09;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:992,114,0 chrXI 250113 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.67;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1323,150,0 chrXI 250134 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.98;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1286,141,0 chrXI 250345 . T A 3040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.203;QD=23.21;ReadPosRankSum=1.573;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:3073,327,0 chrXI 250668 . C T 2651 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.04;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2684,291,0 chrXI 250932 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.50;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2022,231,0 chrXI 251064 . G T 1625 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.58;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1658,177,0 chrXI 251091 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.76;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1421,153,0 chrXI 251136 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.88;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1504,162,0 chrXI 251202 . T C 1036 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=16.98;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1069,120,0 chrXI 251276 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=19.14;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1239,138,0 chrXI 251285 . A G 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=0.433;QD=18.31;ReadPosRankSum=0.650;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1205,138,0 chrXI 251288 . A C 1023 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=15.04;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1056,120,0 chrXI 251328 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.95;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1151,123,0 chrXI 251433 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.42;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1597,177,0 chrXI 251490 . A G 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=4.694;HaplotypeScore=6.0977;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.681;QD=20.84;ReadPosRankSum=1.670;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1221,135,0 chrXI 251593 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.13;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1206,132,0 chrXI 251691 . C G 883 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=14.97;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:916,105,0 chrXI 251749 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.21;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1416,150,0 chrXI 252195 . T C 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.867;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.828;QD=17.90;ReadPosRankSum=1.694;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1680,189,0 chrXI 252204 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=14.80;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,101:105:99:1587,180,0 chrXI 252870 . T C 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.411;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.973;QD=19.39;ReadPosRankSum=1.685;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1468,171,0 chrXI 252887 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.25;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1344,156,0 chrXI 252966 . C T 747 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:780,84,0 chrXI 253766 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.09;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1151,126,0 chrXI 254358 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1761,198,0 chrXI 254477 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=6.931;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.330;QD=23.02;ReadPosRankSum=2.393;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:2013,225,0 chrXI 254579 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.72;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1836,207,0 chrXI 254951 . G C 2348 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.15;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2381,267,0 chrXI 254966 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.34;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2047,231,0 chrXI 254980 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.66;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2016,216,0 chrXI 255050 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.00;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2409,264,0 chrXI 255077 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.61;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2475,267,0 chrXI 255425 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.1797;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.77;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1881,210,0 chrXI 255717 . A T 1251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.57;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1284,141,0 chrXI 255762 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.85;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1065,120,0 chrXI 256440 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.55;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1924,204,0 chrXI 256839 . C A 1311 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.73;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1344,150,0 chrXI 256965 . C A 2005 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2038,234,0 chrXI 257166 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.33;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1803,198,0 chrXI 257183 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.08;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1677,183,0 chrXI 257396 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=17.06;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,104:109:99:1892,216,0 chrXI 257423 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.28;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2328,249,0 chrXI 257878 . T A 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.931;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.058;QD=20.25;ReadPosRankSum=1.693;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1835,198,0 chrXI 257993 . G T 2076 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=21.18;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2109,231,0 chrXI 258001 . T A 2005 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=6.765;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.432;QD=19.28;ReadPosRankSum=2.308;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2038,216,0 chrXI 258002 . C A 1953 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.15;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1986,216,0 chrXI 258604 . A T 2630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=144;Dels=0.00;FS=7.114;HaplotypeScore=18.7011;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.290;QD=18.26;ReadPosRankSum=2.379;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2663,291,0 chrXI 258873 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.002;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=16.4274;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.190;QD=13.95;ReadPosRankSum=2.405;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1568,174,0 chrXI 259465 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.61;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1179,138,0 chrXI 259717 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1745,189,0 chrXI 259792 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.66;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:661,69,0 chrXI 259900 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.94;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1331,147,0 chrXI 260037 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.48;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1712,189,0 chrXI 260152 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=22.27;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1592,174,0 chrXI 260236 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5529;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.67;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1138,120,0 chrXI 260245 . A T 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=56;Dels=0.00;FS=5.465;HaplotypeScore=2.7642;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.619;QD=18.37;ReadPosRankSum=2.838;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1062,114,0 chrXI 260286 . A G 1406 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.38;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1439,159,0 chrXI 260438 . G T 1265 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1298,141,0 chrXI 260628 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.74;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1359,150,0 chrXI 260953 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=52.4046;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.23;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:962,111,0 chrXI 261359 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.039;QD=22.44;ReadPosRankSum=1.686;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1716,195,0 chrXI 261863 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.243;QD=17.32;ReadPosRankSum=1.667;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:1904,213,0 chrXI 261983 . T C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.139;QD=16.06;ReadPosRankSum=1.692;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1430,159,0 chrXI 262090 . T C 1942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.700;QD=20.66;ReadPosRankSum=1.695;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1975,225,0 chrXI 262136 . C A 1780 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.82;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1813,198,0 chrXI 262215 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.52;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2330,249,0 chrXI 263873 . A G 2080 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.3240;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.80;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2113,237,0 chrXI 264216 . A G 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.968;QD=18.93;ReadPosRankSum=1.681;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1320,150,0 chrXI 264611 . T G 1592 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5681;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.90;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1625,183,0 chrXI 264812 . C A 1351 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.16;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1384,147,0 chrXI 264824 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.18;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1203,132,0 chrXI 264974 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1720,189,0 chrXI 265522 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.57;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1473,159,0 chrXI 265911 . C T 310 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=11.48;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:39:343,39,0 chrXI 265955 . G A 833 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:866,93,0 chrXI 266175 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.91;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:922,108,0 chrXI 266211 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.06;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1163,129,0 chrXI 266265 . A G 793 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.32;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:826,93,0 chrXI 266523 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.02;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:946,105,0 chrXI 267498 . G A 892 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=19.39;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:925,99,0 chrXI 267501 . T C 838 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=15.81;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:871,99,0 chrXI 267504 . T C 795 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=7.525;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.947;QD=14.72;ReadPosRankSum=2.359;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:93:828,93,0 chrXI 267510 . A G 811 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=14.23;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:844,96,0 chrXI 267528 . C T 721 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=15.67;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:754,84,0 chrXI 267597 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.14;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1428,159,0 chrXI 267639 . T A 1300 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.31;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1333,150,0 chrXI 267702 . A T 776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=4.323;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.452;QD=16.51;ReadPosRankSum=1.657;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:90:809,90,0 chrXI 267712 . C T 745 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.74;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:778,84,0 chrXI 267822 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.38;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1040,111,0 chrXI 268320 . G A 1307 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.34;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1340,144,0 chrXI 269100 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.32;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1417,156,0 chrXI 269419 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.162;QD=18.81;ReadPosRankSum=1.688;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1519,171,0 chrXI 269512 . C A 1516 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=15.79;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1549,168,0 chrXI 269524 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=15.05;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1463,159,0 chrXI 269674 . C G 1954 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.71;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:90:99:1987,219,0 chrXI 270096 . T C 2578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.598;QD=23.23;ReadPosRankSum=1.638;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2611,294,0 chrXI 270178 . G C 1090 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.12;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1123,126,0 chrXI 270231 . A G 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=74;Dels=0.00;FS=3.979;HaplotypeScore=4.8771;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.039;QD=18.70;ReadPosRankSum=-0.445;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1417,146,0 chrXI 270852 . A G 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=69;Dels=0.00;FS=8.755;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.295;QD=21.16;ReadPosRankSum=3.325;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:4,65:69:99:1493,168,0 chrXI 271065 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1373,144,0 chrXI 271129 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1623,183,0 chrXI 271321 . C T 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.163;QD=20.89;ReadPosRankSum=-0.294;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1140,123,0 chrXI 271548 . A C 1204 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.41;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1237,138,0 chrXI 271718 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=98;Dels=0.00;FS=6.921;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.774;QD=21.13;ReadPosRankSum=2.374;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2104,237,0 chrXI 272320 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.65;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1800,189,0 chrXI 272494 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.31;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1397,153,0 chrXI 272709 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.84;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1878,207,0 chrXI 272996 . A G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.312;QD=21.31;ReadPosRankSum=1.675;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1333,153,0 chrXI 273068 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1089,117,0 chrXI 273176 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.04;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1346,147,0 chrXI 273206 . A G 1282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.299;QD=22.10;ReadPosRankSum=1.673;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1315,147,0 chrXI 273558 . T A 2477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.938;QD=22.52;ReadPosRankSum=1.669;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2510,285,0 chrXI 274129 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=4.523;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.849;QD=18.67;ReadPosRankSum=1.698;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1956,216,0 chrXI 274476 . G A 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.163;QD=19.78;ReadPosRankSum=0.973;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1477,156,0 chrXI 274746 . T C 2053 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.74;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2086,234,0 chrXI 274968 . T C 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.256;QD=19.17;ReadPosRankSum=1.689;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1586,180,0 chrXI 275016 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.56;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1989,222,0 chrXI 275624 . G T 1847 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.30;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1880,201,0 chrXI 276020 . T C 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=4.713;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.702;QD=17.95;ReadPosRankSum=1.685;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1361,153,0 chrXI 276092 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.6008;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.24;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1072,114,0 chrXI 276098 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5740;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.02;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1078,114,0 chrXI 276275 . T A 1764 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1797,201,0 chrXI 276368 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.1649;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.63;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2196,240,0 chrXI 276968 . G C 1852 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.43;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1885,216,0 chrXI 277106 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.41;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1432,162,0 chrXI 277663 . G C 1503 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.56;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1536,174,0 chrXI 277694 . G T 1340 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.33;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1373,147,0 chrXI 277754 . T C 1124 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.48;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1157,129,0 chrXI 277761 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=22.15;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1074,117,0 chrXI 277809 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7486;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=14.22;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1128,126,0 chrXI 278071 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.34;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:826,87,0 chrXI 278102 . A G 525 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.41;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:63:558,63,0 chrXI 278119 . C A 579 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=14.85;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:612,69,0 chrXI 278143 . T G 919 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=16.71;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:952,108,0 chrXI 278179 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.80;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1261,141,0 chrXI 278223 . T A 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.003;DP=96;Dels=0.00;FS=27.567;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-1.097;QD=17.42;ReadPosRankSum=4.079;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:6,90:96:99:1705,186,0 chrXI 278251 . A G 87.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.010;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=102.2521;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-0.413;QD=0.72;ReadPosRankSum=2.107;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:15:120,15,0 chrXI 278388 . C T 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.382;QD=21.27;ReadPosRankSum=1.654;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1926,213,0 chrXI 278406 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.03;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1289,144,0 chrXI 278682 . C G 3137 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.24;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:0,172:172:99:3170,354,0 chrXI 278756 . A C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=74;Dels=0.00;FS=23.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=-0.685;QD=18.81;ReadPosRankSum=2.823;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1425,162,0 chrXI 278762 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=20.65;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1437,162,0 chrXI 278767 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.44;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1341,147,0 chrXI 278776 . G C 1185 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.75;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1218,135,0 chrXI 278902 . T A 894 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.79;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:927,102,0 chrXI 279015 . C G 2610 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.93;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2643,300,0 chrXI 279017 . T A 2704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.357;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.866;QD=22.16;ReadPosRankSum=1.703;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2737,288,0 chrXI 279067 . G T 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=21.51;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1947,210,0 chrXI 279099 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.15;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1814,195,0 chrXI 279188 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=23.63;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1900,216,0 chrXI 279452 . C T 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-1.299;QD=18.89;ReadPosRankSum=-0.354;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1695,165,0 chrXI 279467 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=16.81;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1714,186,0 chrXI 279830 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.2086;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.92;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1774,201,0 chrXI 279884 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.15;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1115,123,0 chrXI 279998 . C G 1605 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.64;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1638,183,0 chrXI 280396 . A G 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;DP=68;Dels=0.01;FS=2.343;HaplotypeScore=41.0144;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=-1.626;QD=2.41;ReadPosRankSum=-3.397;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:41,25:67:99:194,0,664 chrXI 280402 . G A 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=62;Dels=0.00;FS=2.450;HaplotypeScore=5.4716;MLEAC=1;MLEAF=0.500;MQ=58.65;MQ0=0;MQRankSum=-2.974;QD=1.53;ReadPosRankSum=-5.097;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:42,20:62:99:125,0,718 chrXI 280749 . T C 593 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.13;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:626,72,0 chrXI 281006 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.97;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1211,135,0 chrXI 281172 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.89;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1128,123,0 chrXI 281307 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.49;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1383,147,0 chrXI 281564 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4620;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.18;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1526,168,0 chrXI 281610 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1349,150,0 chrXI 282240 . A G 1101 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1134,129,0 chrXI 282383 . G T 787 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=15.74;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:820,90,0 chrXI 282489 . A T 862 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.52;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:895,99,0 chrXI 282515 . C A 752 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.12;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:785,84,0 chrXI 282982 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.50;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1452,162,0 chrXI 283085 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.68;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1525,165,0 chrXI 283164 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.07;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1425,150,0 chrXI 283495 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.09;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1982,210,0 chrXI 283710 . C G 2090 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=19.00;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2123,240,0 chrXI 283762 . T C 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=9.983;HaplotypeScore=11.7851;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.413;QD=19.69;ReadPosRankSum=2.389;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2435,264,0 chrXI 283904 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.315;HaplotypeScore=9.5581;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.117;QD=22.46;ReadPosRankSum=1.673;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2683,294,0 chrXI 284122 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.06;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1855,207,0 chrXI 284248 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.1281;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.36;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1649,189,0 chrXI 284656 . A C 889 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:922,102,0 chrXI 284714 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.17;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1230,138,0 chrXI 284721 . A C 944 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.52;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:977,108,0 chrXI 284914 . C T 781 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.67;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:814,90,0 chrXI 285242 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.32;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:658,75,0 chrXI 285383 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.51;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1496,165,0 chrXI 286522 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.29;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1011,114,0 chrXI 286581 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.25;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1424,153,0 chrXI 286932 . A C 2838 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.70;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,122:125:99:2871,321,0 chrXI 287048 . A T 2273 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2306,255,0 chrXI 287276 . C G 2243 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.68;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2276,255,0 chrXI 287278 . T A 2355 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.48;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2388,255,0 chrXI 287380 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.22;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:2164,234,0 chrXI 287715 . C T 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.7824;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.056;QD=19.88;ReadPosRankSum=0.465;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1683,192,0 chrXI 288159 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1319,144,0 chrXI 288252 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.71;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2048,216,0 chrXI 288285 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.81;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1479,168,0 chrXI 288369 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.85;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1737,189,0 chrXI 288425 . T G 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.947;QD=20.71;ReadPosRankSum=1.594;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1648,183,0 chrXI 288501 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.31;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1269,141,0 chrXI 288683 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.50;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1140,123,0 chrXI 288741 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.74;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1272,135,0 chrXI 288768 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.71;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1338,144,0 chrXI 288812 . A C 1429 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.58;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1462,165,0 chrXI 288830 . T C 1333 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.77;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1366,150,0 chrXI 288886 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.23;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1218,135,0 chrXI 288934 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1498,168,0 chrXI 289028 . C G 1709 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.74;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1742,204,0 chrXI 289102 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.72;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1898,210,0 chrXI 289501 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.30;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1822,204,0 chrXI 289654 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.80;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1961,213,0 chrXI 289718 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.17;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1768,192,0 chrXI 289859 . G C 1555 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.30;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1588,177,0 chrXI 289966 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.10;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2110,240,0 chrXI 290110 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.24;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1706,183,0 chrXI 290335 . T A 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=4.5221;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.834;QD=21.74;ReadPosRankSum=1.604;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1794,189,0 chrXI 291274 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.82;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1102,129,0 chrXI 291275 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.91;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1130,129,0 chrXI 291288 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.63;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:848,96,0 chrXI 291378 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.22;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1582,177,0 chrXI 291388 . T G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-0.375;QD=16.72;ReadPosRankSum=1.661;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1672,189,0 chrXI 291391 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.98;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1599,180,0 chrXI 291599 . T C 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.528;QD=19.74;ReadPosRankSum=1.681;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1395,153,0 chrXI 291796 . C A 2040 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.20;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2073,222,0 chrXI 292055 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1445,153,0 chrXI 292314 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.43;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1471,162,0 chrXI 292550 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.84;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2343,255,0 chrXI 292695 . A G 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.866;QD=18.34;ReadPosRankSum=1.630;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1280,144,0 chrXI 292788 . C T 3776.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.84;SB=-2.009e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3776,402,0 chrXI 292877 . A G 2659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=128;Dels=0.00;FS=4.634;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.455;QD=20.77;ReadPosRankSum=1.704;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,124:128:99:2692,297,0 chrXI 292922 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.28;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2231,246,0 chrXI 292927 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.68;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2198,231,0 chrXI 293043 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2236,255,0 chrXI 294093 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.83;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1932,219,0 chrXI 294317 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.56;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1258,135,0 chrXI 294337 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.512;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.560;QD=18.34;ReadPosRankSum=1.626;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1225,135,0 chrXI 294837 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1316,144,0 chrXI 294927 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.90;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1386,153,0 chrXI 294979 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1327,147,0 chrXI 295134 . A T 1066 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.50;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1099,117,0 chrXI 295501 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.92;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1326,147,0 chrXI 295536 . G T 1410 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.14;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1443,156,0 chrXI 295546 . T A 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.182;QD=17.43;ReadPosRankSum=1.687;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1358,153,0 chrXI 295672 . A G 1755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=4.514;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.394;QD=21.40;ReadPosRankSum=1.690;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1788,201,0 chrXI 295702 . G A 1784 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.87;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1817,198,0 chrXI 295849 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.10;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2020,216,0 chrXI 296208 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.94;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1870,207,0 chrXI 297137 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.51;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1947,222,0 chrXI 297206 . C A 2344 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.56;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2377,261,0 chrXI 297280 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.88;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1600,174,0 chrXI 297833 . C T 2755 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.52;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2788,300,0 chrXI 297874 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.49;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2075,228,0 chrXI 298085 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.1966;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.84;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1781,201,0 chrXI 298392 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1403,153,0 chrXI 298637 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.35;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:793,84,0 chrXI 298808 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1363,150,0 chrXI 298949 . C T 894 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.80;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:927,105,0 chrXI 299533 . G C 419 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.05;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:51:452,51,0 chrXI 299574 . G C 558 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.25;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:66:591,66,0 chrXI 299707 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.59;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1082,120,0 chrXI 299878 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.37;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:823,93,0 chrXI 300490 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.14;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1195,135,0 chrXI 300556 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.64;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2089,222,0 chrXI 300655 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=16.55;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1638,186,0 chrXI 300661 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=15.62;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1501,162,0 chrXI 300787 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.14;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1653,177,0 chrXI 300808 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.50;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1320,144,0 chrXI 300931 . A G 2723 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.3893;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.27;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2756,306,0 chrXI 301521 . A G 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.845;QD=18.86;ReadPosRankSum=2.393;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1655,186,0 chrXI 301630 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1306,144,0 chrXI 301822 . C T 645 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.89;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:678,72,0 chrXI 302020 . T C 1152 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.00;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1185,135,0 chrXI 302051 . T A 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=6.8825;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=1.109;QD=23.77;ReadPosRankSum=1.663;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1293,135,0 chrXI 302094 . A G 683 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=21.34;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:716,84,0 chrXI 302097 . T C 739 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=23.09;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:772,87,0 chrXI 302114 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=22.92;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:99:950,108,0 chrXI 302217 . T C 533 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=9.19;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:63:566,63,0 chrXI 302459 . T A 1758 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.74;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1791,204,0 chrXI 302470 . G T 1668 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=15.16;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1701,189,0 chrXI 302490 . T A 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=1;MQRankSum=-1.532;QD=13.64;ReadPosRankSum=3.364;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:4,128:132:99:1834,204,0 chrXI 302496 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=1;QD=13.46;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:1743,201,0 chrXI 302514 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=1;QD=11.79;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1330,156,0 chrXI 302601 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.693;QD=20.86;ReadPosRankSum=1.693;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1869,207,0 chrXI 302673 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=19.60;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2248,249,0 chrXI 302701 . T G 2205 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.21;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2238,249,0 chrXI 302846 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5165;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.79;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2335,249,0 chrXI 302883 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.02;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1799,201,0 chrXI 302903 . T A 1614 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.43;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1647,174,0 chrXI 302911 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=19.66;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1468,156,0 chrXI 302972 . A T 969 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=7.4818;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=1;QD=16.71;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1002,108,0 chrXI 302978 . T A 985 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.2705;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=1;QD=15.39;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1018,108,0 chrXI 303165 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.87;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1821,192,0 chrXI 303330 . T A 1560 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.37;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1593,174,0 chrXI 303363 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.10;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,150,0 chrXI 303510 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.00;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1944,213,0 chrXI 303593 . A G 2440 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.0184;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.22;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2473,276,0 chrXI 303647 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8287;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.68;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2309,255,0 chrXI 303742 . T C 2010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.141;QD=24.51;ReadPosRankSum=1.690;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2043,228,0 chrXI 303892 . C A 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;DP=96;Dels=0.00;FS=3.343;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.149;QD=22.48;ReadPosRankSum=-1.623;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2191,214,0 chrXI 304331 . T C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.676;QD=22.87;ReadPosRankSum=1.676;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1451,162,0 chrXI 304470 . G A 1036 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=24.09;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1069,114,0 chrXI 304494 . T A 755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=5.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.269;QD=16.78;ReadPosRankSum=1.655;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:93:788,93,0 chrXI 304495 . A G 760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=5.393;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.346;QD=16.89;ReadPosRankSum=1.655;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:93:793,93,0 chrXI 304785 . T A 1285 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.18;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1318,141,0 chrXI 304820 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.86;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1607,174,0 chrXI 304902 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.32;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2231,240,0 chrXI 304908 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=11.3668;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.88;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2228,246,0 chrXI 305086 . A T 1561 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.68;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1594,174,0 chrXI 305339 . A G 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.424;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.315;QD=23.80;ReadPosRankSum=1.693;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2127,237,0 chrXI 305403 . C G 1339 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.09;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1372,150,0 chrXI 305729 . C A 1775 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.29;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1808,198,0 chrXI 306177 . C G 1438 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4661;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.97;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1471,162,0 chrXI 306374 . C A 1576 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.22;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1609,180,0 chrXI 306453 . T G 1667 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.84;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1700,186,0 chrXI 306530 . T A 1334 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.00;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1367,156,0 chrXI 306545 . A G 1358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=62;Dels=0.00;FS=3.040;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.339;QD=21.90;ReadPosRankSum=2.371;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1391,156,0 chrXI 306652 . T G 1507 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.23;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1540,171,0 chrXI 306732 . A C 1234 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.23;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1267,141,0 chrXI 307067 . C G 1875 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.59;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1908,213,0 chrXI 307110 . A G 1621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.198;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.512;QD=22.51;ReadPosRankSum=1.683;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1654,183,0 chrXI 307162 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.18;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1579,165,0 chrXI 307166 . T G 1379 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.91;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1412,159,0 chrXI 307341 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=19.97;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1990,222,0 chrXI 307466 . C G 1688 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.35;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1721,189,0 chrXI 307722 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.33;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1639,180,0 chrXI 307916 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=101;Dels=0.00;FS=5.603;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=-1.970;QD=17.75;ReadPosRankSum=2.591;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1826,207,0 chrXI 307998 . C A 1724 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.34;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1757,195,0 chrXI 308031 . T A 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.591;QD=19.65;ReadPosRankSum=1.690;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1644,183,0 chrXI 308236 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.93;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1368,150,0 chrXI 308425 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.57;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2233,252,0 chrXI 308513 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.36;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1466,159,0 chrXI 308560 . A C 1710 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.11;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1743,195,0 chrXI 308593 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.77;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1579,174,0 chrXI 308638 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.49;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1549,171,0 chrXI 308754 . T G 2693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.634;QD=21.89;ReadPosRankSum=1.676;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2726,306,0 chrXI 308826 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.60;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1804,198,0 chrXI 309009 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.0130;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.25;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1804,198,0 chrXI 309090 . T A 1530 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.17;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1563,168,0 chrXI 309188 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;DP=76;Dels=0.00;FS=18.221;HaplotypeScore=10.6122;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.236;QD=17.14;ReadPosRankSum=3.709;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:5,71:76:99:1336,150,0 chrXI 309294 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.75;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1216,129,0 chrXI 309751 . T G 1255 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.27;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1288,144,0 chrXI 309937 . G T 1345 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.42;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1378,147,0 chrXI 310006 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.402;QD=20.57;ReadPosRankSum=1.691;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1761,198,0 chrXI 310373 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.13;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1322,144,0 chrXI 310507 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9008;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=17.09;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1366,159,0 chrXI 310702 . C A 1676 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.61;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1709,180,0 chrXI 310798 . C A 1830 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=22.59;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1863,204,0 chrXI 311030 . T C 1138 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=16.99;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1171,129,0 chrXI 311077 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.48;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1624,177,0 chrXI 311174 . T G 349.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.451;DP=89;Dels=0.00;FS=15.107;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=34.38;MQ0=0;MQRankSum=0.168;QD=3.92;ReadPosRankSum=-7.820;SB=-3.640e+02 GT:AD:DP:GQ:PL 0/1:39,49:89:74:379,0,74 chrXI 311221 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=16.30;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:783,84,0 chrXI 311233 . G C 859 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=16.21;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:892,99,0 chrXI 311278 . T C 1211 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.22;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1244,141,0 chrXI 311294 . A C 1107 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.85;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1140,126,0 chrXI 311331 . T C 1813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.5010;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-1.254;QD=20.60;ReadPosRankSum=1.692;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1846,207,0 chrXI 311431 . A T 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=4.771;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=0.844;QD=22.13;ReadPosRankSum=1.688;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1759,189,0 chrXI 311502 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=22.04;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1862,207,0 chrXI 311526 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.247;QD=19.31;ReadPosRankSum=1.687;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1520,171,0 chrXI 311614 . C G 1733 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.63;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1766,204,0 chrXI 311668 . A G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=114;Dels=0.00;FS=7.566;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=2.255;QD=18.47;ReadPosRankSum=2.385;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:2,112:114:99:2139,237,0 chrXI 311735 . G A 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DP=88;Dels=0.00;FS=3.597;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=-0.020;QD=16.50;ReadPosRankSum=-1.493;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1485,145,0 chrXI 311744 . T G 1373 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.38;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1406,156,0 chrXI 311820 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.75;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2087,231,0 chrXI 311897 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.72;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1521,171,0 chrXI 311898 . A G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=89;Dels=0.00;FS=2.428;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;MQRankSum=-1.580;QD=16.31;ReadPosRankSum=2.921;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1485,165,0 chrXI 311975 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.78;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1855,207,0 chrXI 312016 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.13;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1684,183,0 chrXI 312109 . T C 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.917;QD=21.54;ReadPosRankSum=1.681;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1498,168,0 chrXI 312262 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.13;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1206,129,0 chrXI 312289 . C T 1841 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.30;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1874,204,0 chrXI 312511 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.55;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1350,150,0 chrXI 312541 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=15.16;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1140,123,0 chrXI 312545 . T G 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-0.396;QD=14.82;ReadPosRankSum=1.633;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1085,123,0 chrXI 312553 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=14.50;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:990,111,0 chrXI 312640 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.72;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1421,150,0 chrXI 312734 . A C 1450 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.59;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1483,165,0 chrXI 312773 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.68;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1563,171,0 chrXI 313024 . T C 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=3.017;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-0.117;QD=23.23;ReadPosRankSum=2.310;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:99:1264,147,0 chrXI 313063 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=22.80;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1082,120,0 chrXI 313073 . A C 1009 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=22.93;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1042,117,0 chrXI 313084 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.70;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1151,132,0 chrXI 313195 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=18.53;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1330,147,0 chrXI 313215 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=22.27;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1525,168,0 chrXI 313247 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=21.25;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1393,147,0 chrXI 313296 . C G 730 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=16.98;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:87:763,87,0 chrXI 313299 . T C 695 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=16.95;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:84:728,84,0 chrXI 313318 . G A 610 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;QD=17.43;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:69:643,69,0 chrXI 313345 . G T 609 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=18.45;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:69:642,69,0 chrXI 313349 . T C 581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=10.142;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;MQRankSum=-1.509;QD=18.74;ReadPosRankSum=1.621;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,30:31:69:614,69,0 chrXI 313365 . C T 537 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=21.48;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:63:570,63,0 chrXI 313367 . G A 500 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=19.23;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:60:533,60,0 chrXI 313486 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=23.45;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1323,144,0 chrXI 313488 . T A 1208 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=22.79;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1241,144,0 chrXI 313513 . T G 828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=5.607;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=-0.087;QD=20.70;ReadPosRankSum=1.646;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:861,99,0 chrXI 313523 . T A 871 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=20.26;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:904,102,0 chrXI 313602 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=16.44;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:36:329,36,0 chrXI 313924 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=4.71;SB=-2.176e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:50,6,0 chrXI 313985 . G A 755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.632;DP=42;Dels=0.00;FS=29.364;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;MQRankSum=3.833;QD=17.98;ReadPosRankSum=4.234;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:11,31:42:84:788,84,0 chrXI 313997 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=22.36;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:905,102,0 chrXI 314119 . G C 776 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=20.97;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:90:809,90,0 chrXI 314126 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=18.60;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:591,66,0 chrXI 314163 . A G 263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=4.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;MQRankSum=-1.240;QD=18.79;ReadPosRankSum=1.488;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:33:296,33,0 chrXI 314694 . A G 612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=8.765;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;MQRankSum=-1.528;QD=14.23;ReadPosRankSum=2.336;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:72:645,72,0 chrXI 314713 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=14.00;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:579,63,0 chrXI 314746 . A C 349 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=-1.733;QD=10.26;ReadPosRankSum=1.631;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:42:382,42,0 chrXI 314749 . G A 392 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=10.59;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:45:425,45,0 chrXI 314752 . T C 352 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=9.78;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:45:385,45,0 chrXI 314765 . T C 342 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=9.50;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:42:375,42,0 chrXI 314766 . A G 343 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=9.53;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:45:376,45,0 chrXI 314793 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=12.39;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:72:640,72,0 chrXI 314906 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=22.97;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1733,192,0 chrXI 315068 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=20.27;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,135,0 chrXI 315069 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=8.449;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=1.091;QD=19.38;ReadPosRankSum=2.368;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1196,135,0 chrXI 315107 . G C 1211 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.81;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1244,138,0 chrXI 315617 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=4.886;HaplotypeScore=5.0211;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.147;QD=21.95;ReadPosRankSum=1.417;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1723,195,0 chrXI 315654 . G C 1274 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.91;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1307,147,0 chrXI 315726 . A G 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.267;QD=20.17;ReadPosRankSum=1.690;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1687,186,0 chrXI 315777 . A G 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.697;QD=17.36;ReadPosRankSum=1.687;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1370,153,0 chrXI 315805 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=19.60;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1542,162,0 chrXI 315840 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=18.97;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1228,132,0 chrXI 315844 . T C 1102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=16.95;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1135,132,0 chrXI 315853 . T C 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=6.463;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;MQRankSum=0.224;QD=15.44;ReadPosRankSum=1.676;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:990,111,0 chrXI 315867 . A G 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;MQRankSum=-0.346;QD=16.64;ReadPosRankSum=1.675;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1048,117,0 chrXI 315893 . G T 897 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=15.47;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:930,105,0 chrXI 315895 . C T 957 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=16.22;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:990,105,0 chrXI 315903 . C T 928 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;MQRankSum=-0.836;QD=16.00;ReadPosRankSum=0.836;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:961,108,0 chrXI 315904 . T A 942 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=1.559;QD=15.70;ReadPosRankSum=0.693;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:975,108,0 chrXI 315915 . A G 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;MQRankSum=0.646;QD=15.37;ReadPosRankSum=1.681;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1063,117,0 chrXI 316142 . T C 800 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=19.51;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:93:833,93,0 chrXI 316198 . C T 482 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=20.08;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:57:515,57,0 chrXI 316222 . C G 504 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=19.38;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:60:537,60,0 chrXI 316332 . A G 942 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=18.12;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:975,108,0 chrXI 316346 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.25;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1284,144,0 chrXI 316362 . C A 1242 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=16.56;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1275,138,0 chrXI 316511 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.49;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1630,177,0 chrXI 316643 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=22.80;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1264,135,0 chrXI 316704 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=23.25;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1591,171,0 chrXI 316707 . A G 1516 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=22.29;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1549,174,0 chrXI 316845 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.9522;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.689;QD=18.28;ReadPosRankSum=1.689;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1514,168,0 chrXI 317019 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.59;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1566,180,0 chrXI 317142 . G C 1549 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=23.0298;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.44;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1582,174,0 chrXI 317375 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.81;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1499,168,0 chrXI 317549 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.11;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1122,120,0 chrXI 317712 . C G 1609 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.17;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1642,183,0 chrXI 318519 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.304;QD=18.95;ReadPosRankSum=1.647;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1568,180,0 chrXI 318978 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1464,159,0 chrXI 319011 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1158,135,0 chrXI 319054 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1012,111,0 chrXI 319143 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.29;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1192,135,0 chrXI 320400 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.26;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2565,285,0 chrXI 320565 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.16;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1509,168,0 chrXI 320791 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4427;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.48;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1764,189,0 chrXI 320968 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.85;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1798,198,0 chrXI 321333 . A G 1305 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.8366;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=16.95;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1338,150,0 chrXI 321631 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.197;QD=23.04;ReadPosRankSum=2.379;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1623,180,0 chrXI 321646 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=24.18;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1605,171,0 chrXI 321711 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.95;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1265,141,0 chrXI 321714 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.22;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1282,141,0 chrXI 321847 . T C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=0.060;QD=12.30;ReadPosRankSum=1.573;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1103,126,0 chrXI 321853 . C A 1134 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=13.66;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1167,126,0 chrXI 321982 . T A 2015 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.44;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2048,228,0 chrXI 322024 . C A 1770 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.45;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1803,198,0 chrXI 322047 . A C 1765 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.61;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1798,207,0 chrXI 322082 . T A 2022 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.74;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2055,216,0 chrXI 322176 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=0.217;QD=21.27;ReadPosRankSum=1.678;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1394,153,0 chrXI 322974 . C G 650 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.97;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:78:683,78,0 chrXI 323019 . A T 824 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.10;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:857,96,0 chrXI 323187 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4800;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=12.00;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:90:825,90,0 chrXI 323380 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.73;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1276,144,0 chrXI 323565 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.17;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1788,198,0 chrXI 323761 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.32;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2248,246,0 chrXI 323867 . A T 1832 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.81;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1865,201,0 chrXI 323926 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.87;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1932,216,0 chrXI 323947 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.43;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2005,213,0 chrXI 324286 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.18;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,192,0 chrXI 324419 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1806,192,0 chrXI 324673 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.05;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1858,213,0 chrXI 325126 . A T 1954 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.99;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1987,213,0 chrXI 325158 . C G 1853 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.16;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1886,210,0 chrXI 325756 . G T 840 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.70;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:873,93,0 chrXI 326243 . T C 572 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.45;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:66:605,66,0 chrXI 326248 . A T 483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.362;QD=17.25;ReadPosRankSum=0.495;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:60:516,60,0 chrXI 326734 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.01;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1421,153,0 chrXI 326759 . T G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=4.0102;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.507;QD=20.71;ReadPosRankSum=1.436;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1731,192,0 chrXI 327038 . G A 2697 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.9228;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.43;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,127:132:99:2730,300,0 chrXI 327663 . G A 1708 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.35;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1741,201,0 chrXI 327893 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.24;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1996,216,0 chrXI 327998 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.22;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2677,291,0 chrXI 328028 . C G 2763 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.62;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2796,312,0 chrXI 328041 . T C 2657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.009;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7860;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=1.123;QD=19.12;ReadPosRankSum=2.344;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2690,297,0 chrXI 328057 . C T 2584 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.58;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2617,282,0 chrXI 328102 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.23;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2572,282,0 chrXI 328199 . G A 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=4.197;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.469;QD=19.45;ReadPosRankSum=0.979;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1861,198,0 chrXI 328292 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.15;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1390,159,0 chrXI 328373 . T C 1859 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.6336;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=16.90;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1892,210,0 chrXI 328433 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=17.43;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2020,219,0 chrXI 328613 . T C 653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=6.887;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.851;QD=13.60;ReadPosRankSum=2.348;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:78:686,78,0 chrXI 328619 . A T 676 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=14.38;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:709,81,0 chrXI 328709 . G C 1182 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.76;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1215,135,0 chrXI 328781 . G T 1200 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.8159;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.14;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1233,135,0 chrXI 328853 . A T 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=4.914;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.000;QD=20.71;ReadPosRankSum=1.621;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1317,144,0 chrXI 328937 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.35;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1250,141,0 chrXI 329482 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.47;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1766,198,0 chrXI 329573 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.03;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1442,162,0 chrXI 329586 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=17.66;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1340,153,0 chrXI 329590 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.44;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1394,162,0 chrXI 329645 . T A 1502 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=18.32;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1535,168,0 chrXI 329681 . A T 1770 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=16.86;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1803,192,0 chrXI 329685 . C T 1590 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=15.29;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1623,183,0 chrXI 329686 . T A 1657 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.09;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1690,189,0 chrXI 329718 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.96;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2404,261,0 chrXI 329812 . A T 1500 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=18.75;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1533,165,0 chrXI 329885 . A G 812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=13.262;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=0.746;QD=14.00;ReadPosRankSum=2.365;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:96:845,96,0 chrXI 329892 . A G 776 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.92;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:809,90,0 chrXI 329896 . A C 776 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=15.22;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:809,93,0 chrXI 329897 . T C 863 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.267;QD=16.60;ReadPosRankSum=1.666;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:896,102,0 chrXI 329949 . T A 1063 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=15.63;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1096,120,0 chrXI 329955 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=15.64;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1237,132,0 chrXI 330549 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.05;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1671,186,0 chrXI 330610 . C A 2333 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.80;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2366,246,0 chrXI 330692 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.72;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1734,195,0 chrXI 331388 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.49;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1720,201,0 chrXI 331675 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.52;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1992,225,0 chrXI 332101 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.61;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1379,153,0 chrXI 332298 . G A 1195 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1228,129,0 chrXI 332476 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.92;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1875,201,0 chrXI 332863 . A C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.737;QD=21.45;ReadPosRankSum=1.692;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1899,213,0 chrXI 332964 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.68;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1915,204,0 chrXI 333057 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.59;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1424,153,0 chrXI 333073 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=0.420;QD=16.09;ReadPosRankSum=1.680;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1095,123,0 chrXI 333079 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=16.10;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1112,123,0 chrXI 333340 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.82;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1473,162,0 chrXI 333556 . T C 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=0.650;QD=22.17;ReadPosRankSum=1.678;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1452,162,0 chrXI 333577 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.52;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1452,165,0 chrXI 333609 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.57;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1974,219,0 chrXI 333757 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.21;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2587,288,0 chrXI 334135 . C A 2479 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.49;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2512,276,0 chrXI 334735 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.20;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1562,174,0 chrXI 334980 . T C 1170 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1203,132,0 chrXI 334995 . G A 1397 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1430,153,0 chrXI 335143 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=7.9362;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=0;QD=0.80;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:43,6,0 chrXI 335312 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1942,210,0 chrXI 335383 . C T 1320 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5951;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1353,150,0 chrXI 335408 . T G 743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.547;QD=19.55;ReadPosRankSum=1.641;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:90:776,90,0 chrXI 335429 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.68;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:743,81,0 chrXI 335465 . G C 817 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.76;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:850,96,0 chrXI 335606 . A G 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9281;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.462;QD=21.21;ReadPosRankSum=1.687;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1666,189,0 chrXI 336012 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.94;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2087,222,0 chrXI 336059 . T C 2449 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.6217;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.41;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2482,279,0 chrXI 336133 . C T 2707 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.37;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2740,294,0 chrXI 336224 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.15;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1383,156,0 chrXI 336232 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.50;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1291,141,0 chrXI 336457 . G A 3183 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.5354;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.40;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3216,363,0 chrXI 336540 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.34;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2018,216,0 chrXI 336698 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.8007;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.97;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2369,255,0 chrXI 336933 . G A 3327.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.89;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3327,354,0 chrXI 337206 . A G 2843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=134;Dels=0.00;FS=16.440;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.659;QD=21.22;ReadPosRankSum=2.262;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:4,126:134:99:2876,318,0 chrXI 337365 . T G 2230 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.0333;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.24;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2263,252,0 chrXI 337387 . T A 2026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=93;Dels=0.00;FS=8.225;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.469;QD=21.78;ReadPosRankSum=2.396;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2059,219,0 chrXI 337518 . C T 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.599;DP=109;Dels=0.00;FS=2.337;HaplotypeScore=6.9594;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;MQRankSum=0.617;QD=14.08;ReadPosRankSum=0.654;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:4,105:109:99:1568,147,0 chrXI 337530 . T C 123.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235;DP=107;Dels=0.00;FS=1.829;HaplotypeScore=69.8623;MLEAC=1;MLEAF=0.500;MQ=35.41;MQ0=0;MQRankSum=-2.004;QD=1.15;ReadPosRankSum=3.938;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:78,28:107:99:153,0,572 chrXI 337531 . T G 386.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=79.7052;MLEAC=1;MLEAF=0.500;MQ=34.94;MQ0=0;MQRankSum=1.623;QD=3.54;ReadPosRankSum=0.450;SB=-4.490e+02 GT:AD:DP:GQ:PL 0/1:50,59:109:99:416,0,276 chrXI 337536 . C T 305.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.979;DP=99;Dels=0.03;FS=2.839;HaplotypeScore=78.6823;MLEAC=1;MLEAF=0.500;MQ=32.62;MQ0=0;MQRankSum=0.517;QD=3.08;ReadPosRankSum=-0.906;SB=-3.120e+02 GT:AD:DP:GQ:PL 0/1:46,50:96:99:335,0,206 chrXI 337567 . G T 211.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.668;DP=92;Dels=0.00;FS=10.620;HaplotypeScore=177.7750;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;MQRankSum=1.436;QD=2.29;ReadPosRankSum=1.578;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:24,68:92:27:244,27,0 chrXI 337572 . C T 188.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.647;DP=86;Dels=0.00;FS=8.500;HaplotypeScore=91.8434;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;MQRankSum=0.767;QD=2.19;ReadPosRankSum=3.063;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:22,64:86:24:221,24,0 chrXI 337772 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.17;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1701,192,0 chrXI 337857 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6200;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=15.83;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1663,180,0 chrXI 338056 . C T 2047 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.95;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2080,222,0 chrXI 338730 . A T 2164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.849;QD=21.22;ReadPosRankSum=1.698;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2197,237,0 chrXI 338893 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=17.93;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1718,183,0 chrXI 338984 . C T 655 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.6670;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=11.49;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:75:688,75,0 chrXI 339113 . T C 3426.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.69;SB=-1.944e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3426,378,0 chrXI 339180 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.13;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2106,228,0 chrXI 339266 . T C 915 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=21.79;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:948,102,0 chrXI 339536 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1391,156,0 chrXI 340007 . T C 2252 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.66;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2285,255,0 chrXI 340064 . A G 2933 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.65;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2966,330,0 chrXI 340155 . T G 2421 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.24;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2454,273,0 chrXI 340231 . G C 1596 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=14.00;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1629,183,0 chrXI 340235 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.599;QD=13.28;ReadPosRankSum=2.319;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:1534,171,0 chrXI 340285 . G C 1403 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=16.70;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1436,165,0 chrXI 340558 . A G 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=111;Dels=0.00;FS=3.842;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.238;QD=21.10;ReadPosRankSum=1.700;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2375,264,0 chrXI 340770 . T A 1037 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=15.95;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1070,126,0 chrXI 340783 . C T 973 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=15.20;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1006,108,0 chrXI 340811 . T C 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=10.317;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.156;QD=14.37;ReadPosRankSum=2.311;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1053,117,0 chrXI 340852 . G T 1012 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=14.67;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1045,114,0 chrXI 340923 . C T 891 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=10.24;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:924,99,0 chrXI 340989 . G A 1032 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=13.23;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1065,117,0 chrXI 341112 . A T 1194 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.95;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1227,135,0 chrXI 341413 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.57;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1139,126,0 chrXI 341641 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2533,267,0 chrXI 341753 . A T 1973 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.49;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2006,219,0 chrXI 342085 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.046;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.787;QD=19.91;ReadPosRankSum=1.697;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2004,225,0 chrXI 342148 . T A 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.370;QD=19.82;ReadPosRankSum=1.654;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1797,201,0 chrXI 342298 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.82;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1275,144,0 chrXI 342308 . G C 1197 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.70;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1230,138,0 chrXI 342429 . A G 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.707;DP=45;Dels=0.00;FS=2.569;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.751;QD=19.36;ReadPosRankSum=2.844;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:3,42:45:99:904,102,0 chrXI 342529 . C T 564 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.19;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:63:597,63,0 chrXI 342712 . A G 600 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.494;QD=20.00;ReadPosRankSum=1.614;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:72:633,72,0 chrXI 342776 . A T 257 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=13.53;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:290,33,0 chrXI 342813 . A G 553 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.12;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:63:586,63,0 chrXI 342972 . A G 929 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.11;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:962,114,0 chrXI 343095 . A C 945 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.62;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:978,111,0 chrXI 343212 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.49;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1816,195,0 chrXI 343231 . C G 1503 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.56;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1536,171,0 chrXI 343371 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=16.07;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1254,141,0 chrXI 343477 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.2572;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.23;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1631,177,0 chrXI 343519 . T C 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=85;Dels=0.00;FS=6.131;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.750;QD=19.62;ReadPosRankSum=2.870;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1701,189,0 chrXI 343772 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.77;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2232,252,0 chrXI 343793 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.90;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1893,207,0 chrXI 343926 . T C 1758 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.90;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1791,198,0 chrXI 343932 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.11;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1735,189,0 chrXI 343968 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.370;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.056;QD=16.05;ReadPosRankSum=1.695;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1526,168,0 chrXI 344089 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.784;QD=18.41;ReadPosRankSum=1.696;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1800,201,0 chrXI 344106 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.09;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1620,180,0 chrXI 344217 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9651;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.57;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1259,138,0 chrXI 344242 . G A 1140 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=15.00;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1173,126,0 chrXI 344249 . C A 1141 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=14.82;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1174,129,0 chrXI 344684 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.12;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1368,147,0 chrXI 344692 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=14.00;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1209,135,0 chrXI 344705 . G C 1129 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=13.77;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1162,129,0 chrXI 345623 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.44;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1641,183,0 chrXI 347287 . T G 1376 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.14;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1409,159,0 chrXI 347586 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=4.002;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.601;QD=20.75;ReadPosRankSum=1.697;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2087,240,0 chrXI 347628 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.62;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2528,285,0 chrXI 347878 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.45;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1628,180,0 chrXI 348083 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.25;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1791,192,0 chrXI 348351 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.27;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2040,225,0 chrXI 348711 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1517,162,0 chrXI 348948 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.61;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2021,219,0 chrXI 349176 . A G 1389 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.13;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1422,162,0 chrXI 349262 . C G 1746 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.84;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1779,201,0 chrXI 349504 . A G 1881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=13.4502;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.619;QD=20.23;ReadPosRankSum=1.694;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1914,222,0 chrXI 349875 . C T 1986 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.3056;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.69;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2019,213,0 chrXI 350071 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=72;Dels=0.00;FS=3.072;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.147;QD=22.83;ReadPosRankSum=1.683;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1677,186,0 chrXI 350428 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.98;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1172,132,0 chrXI 350464 . A T 1512 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.91;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1545,165,0 chrXI 350473 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.86;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1463,162,0 chrXI 350485 . T C 1416 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.88;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1449,159,0 chrXI 350578 . T C 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.337;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.866;QD=21.24;ReadPosRankSum=1.687;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1647,183,0 chrXI 350701 . T G 1562 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.83;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1595,177,0 chrXI 350852 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.00;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:978,108,0 chrXI 350945 . G A 926 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.59;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:959,105,0 chrXI 351078 . T A 890 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.34;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:923,102,0 chrXI 351311 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.76;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1883,210,0 chrXI 351443 . C A 1757 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.92;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1790,198,0 chrXI 351518 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.97;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2130,249,0 chrXI 351752 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.000;QD=20.38;ReadPosRankSum=1.698;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2112,240,0 chrXI 352064 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.12;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2272,249,0 chrXI 352346 . T A 1971 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.51;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2004,219,0 chrXI 352511 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.91;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1810,204,0 chrXI 352727 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.44;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1806,192,0 chrXI 353214 . A C 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.980;QD=22.48;ReadPosRankSum=1.699;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2416,267,0 chrXI 353393 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.22;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1612,183,0 chrXI 353419 . C T 1891 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.78;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1924,216,0 chrXI 353786 . G C 1328 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.97;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1361,153,0 chrXI 354092 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1626,183,0 chrXI 354194 . A C 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.175;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.459;QD=17.99;ReadPosRankSum=1.630;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1256,141,0 chrXI 354197 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.16;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1234,138,0 chrXI 354293 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.89;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,195,0 chrXI 355110 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.26;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1670,180,0 chrXI 355117 . A G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=91;Dels=0.00;FS=5.195;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-0.823;QD=17.15;ReadPosRankSum=2.933;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:4,87:91:99:1594,180,0 chrXI 355159 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.51;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1184,138,0 chrXI 355187 . A G 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.163;DP=49;Dels=0.00;FS=1.966;HaplotypeScore=7.4746;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-0.677;QD=15.14;ReadPosRankSum=-0.347;SB=-4.529e+02 GT:AD:DP:GQ:PL 1/1:5,44:49:90:775,90,0 chrXI 355264 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=49.9594;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.68;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1442,159,0 chrXI 355332 . C A 1080 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3790;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.29;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1113,126,0 chrXI 355411 . C A 1133 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.60;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1166,126,0 chrXI 355412 . G A 1189 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.23;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1222,132,0 chrXI 355474 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.71;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1292,144,0 chrXI 355535 . C G 772 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=14.57;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:53:90:805,90,0 chrXI 355543 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=17.23;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:843,96,0 chrXI 355752 . C G 1990 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.11;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2023,234,0 chrXI 356016 . C G 923 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=22.3493;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.10;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:956,111,0 chrXI 356064 . G C 1383 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.44;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1416,162,0 chrXI 356125 . T G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-1.732;QD=15.33;ReadPosRankSum=1.693;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1382,156,0 chrXI 356171 . G A 690 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=11.69;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:723,78,0 chrXI 356199 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=2.817;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.126;QD=16.21;ReadPosRankSum=2.362;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:941,105,0 chrXI 356276 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.31;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,111,0 chrXI 356343 . T C 533 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.19;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:63:566,63,0 chrXI 356360 . G C 319 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=12.27;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,23:26:39:352,39,0 chrXI 356395 . T C 465 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.60;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:498,57,0 chrXI 356876 . A G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=108;Dels=0.00;FS=8.234;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.676;QD=18.32;ReadPosRankSum=2.403;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:2,103:108:99:2012,234,0 chrXI 357380 . T C 4286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=211;Dels=0.00;FS=8.921;HaplotypeScore=10.1869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.430;QD=20.31;ReadPosRankSum=3.368;SB=-1.911e+03 GT:AD:DP:GQ:PL 1/1:4,206:211:99:4286,459,0 chrXI 357892 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.4285;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.26;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1816,195,0 chrXI 357937 . G C 1399 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3625;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.46;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1432,165,0 chrXI 358024 . A C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=18.9676;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.593;QD=17.60;ReadPosRankSum=1.687;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1388,156,0 chrXI 358522 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.82;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1124,120,0 chrXI 358714 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1411,150,0 chrXI 358834 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.51;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1631,177,0 chrXI 358952 . C A 1631 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.30;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1664,177,0 chrXI 359142 . T C 1790 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0326;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.89;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1823,207,0 chrXI 359850 . T C 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=0.950;QD=19.16;ReadPosRankSum=1.676;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1221,138,0 chrXI 359854 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.03;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1235,138,0 chrXI 359871 . A G 976 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=16.54;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1009,114,0 chrXI 359874 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=1.434;QD=15.86;ReadPosRankSum=1.553;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:953,111,0 chrXI 360238 . G C 1403 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.63;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1436,162,0 chrXI 360304 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.82;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1975,210,0 chrXI 360925 . T A 1523 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=3.007;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=1.970;QD=19.78;ReadPosRankSum=2.226;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1556,168,0 chrXI 360927 . C T 1413 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.09;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1446,156,0 chrXI 360932 . C T 1425 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.27;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1458,159,0 chrXI 360940 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.10;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1300,138,0 chrXI 361015 . T A 1311 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.17;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1344,147,0 chrXI 361040 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.96;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,147,0 chrXI 361052 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7406;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.45;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1380,147,0 chrXI 361298 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.90;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1522,171,0 chrXI 361385 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.35;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1446,162,0 chrXI 361475 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.13;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1523,168,0 chrXI 361482 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.210;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.936;QD=18.06;ReadPosRankSum=1.613;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1604,177,0 chrXI 361682 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.64;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1245,132,0 chrXI 361703 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.45;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1158,123,0 chrXI 361774 . G T 1836 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=23.54;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1869,204,0 chrXI 361800 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=22.24;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1901,213,0 chrXI 361807 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=22.52;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1947,216,0 chrXI 361878 . A C 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.622;QD=17.27;ReadPosRankSum=1.688;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1380,153,0 chrXI 361973 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.545;DP=115;Dels=0.00;FS=2.516;HaplotypeScore=17.3143;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.902;QD=19.68;ReadPosRankSum=2.920;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:3,110:115:99:2296,261,0 chrXI 362017 . A C 2442 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.61;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2475,276,0 chrXI 362101 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.6638;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=22.05;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1841,210,0 chrXI 362114 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=21.77;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1753,192,0 chrXI 362157 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=0.449;QD=18.98;ReadPosRankSum=1.647;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1570,177,0 chrXI 362170 . G T 1385 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=18.72;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1418,153,0 chrXI 362171 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=-0.096;QD=18.15;ReadPosRankSum=1.684;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1340,150,0 chrXI 362231 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.28;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1208,135,0 chrXI 362247 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=16.62;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1296,147,0 chrXI 362299 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.73;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1493,165,0 chrXI 362322 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.005;QD=20.88;ReadPosRankSum=1.604;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1724,192,0 chrXI 362502 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.10;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1246,138,0 chrXI 362636 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.65;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1440,156,0 chrXI 362657 . A G 1363 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.97;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1396,156,0 chrXI 362661 . A G 1281 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.41;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1314,150,0 chrXI 362665 . G A 1236 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.45;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1269,144,0 chrXI 363248 . G A 1647 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.15;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1680,186,0 chrXI 363372 . T C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=96;Dels=0.00;FS=3.033;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.335;QD=21.96;ReadPosRankSum=2.372;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2141,240,0 chrXI 363449 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.577;QD=20.38;ReadPosRankSum=1.660;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2010,234,0 chrXI 363812 . G C 2776 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.14;SB=-1.716e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2809,312,0 chrXI 363989 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.98;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2091,234,0 chrXI 364133 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=13.95;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1177,129,0 chrXI 364194 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7278;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=14.58;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1156,126,0 chrXI 364367 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=11.84;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:36:329,36,0 chrXI 364384 . T C 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.990;QD=13.50;ReadPosRankSum=1.486;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:45:411,45,0 chrXI 364488 . G A 786 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.15;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:96:819,96,0 chrXI 364489 . G A 877 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.49;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:910,99,0 chrXI 364596 . T A 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=1.568;QD=18.31;ReadPosRankSum=1.650;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:93:802,93,0 chrXI 364605 . C T 590 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=14.39;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:69:623,69,0 chrXI 364621 . G A 570 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=14.62;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:39:66:603,66,0 chrXI 364623 . C T 546 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=14.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:66:579,66,0 chrXI 364928 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.54;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1735,186,0 chrXI 364951 . T G 1497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.926;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=0.079;QD=19.19;ReadPosRankSum=2.387;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1530,171,0 chrXI 364965 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=18.87;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1505,165,0 chrXI 365043 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.03;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1365,150,0 chrXI 365138 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=16.14;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1421,159,0 chrXI 365167 . C A 1697 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.05;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1730,192,0 chrXI 365209 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=15.89;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1463,156,0 chrXI 365224 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.64;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1248,138,0 chrXI 365364 . A C 1083 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.92;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1116,126,0 chrXI 365381 . A G 1081 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.63;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1114,129,0 chrXI 365453 . C G 1249 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.15;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1282,147,0 chrXI 365573 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.41;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1766,192,0 chrXI 365859 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.48;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1653,180,0 chrXI 365937 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.26;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2079,231,0 chrXI 366156 . A G 841 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.52;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:874,96,0 chrXI 366174 . G C 919 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.76;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:952,105,0 chrXI 366213 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.58;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1453,159,0 chrXI 366486 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.08;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2268,258,0 chrXI 366579 . C T 1873 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.73;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1906,210,0 chrXI 366681 . A C 1835 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3130;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.95;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1868,210,0 chrXI 366732 . A C 1355 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=16.33;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1388,153,0 chrXI 366804 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.07;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2588,294,0 chrXI 366808 . T C 2629 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.62;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2662,294,0 chrXI 366840 . C T 2557 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=18.66;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2590,285,0 chrXI 366957 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.30;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2022,219,0 chrXI 366981 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=17.84;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1710,186,0 chrXI 367128 . A T 2307 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.78;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2340,252,0 chrXI 367140 . G C 2172 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.41;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2205,246,0 chrXI 367251 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-0.557;QD=19.83;ReadPosRankSum=-0.618;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2314,258,0 chrXI 367263 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.44;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2281,243,0 chrXI 367419 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.85;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1363,153,0 chrXI 367533 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.11;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1681,186,0 chrXI 367554 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.15;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1603,174,0 chrXI 367626 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.86;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1347,156,0 chrXI 367701 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.47;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1622,186,0 chrXI 367753 . A G 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=3.478;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.672;QD=19.60;ReadPosRankSum=1.662;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1013,114,0 chrXI 367768 . C G 648 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.20;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:75:681,75,0 chrXI 367788 . C T 531 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=14.35;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:564,63,0 chrXI 367790 . G A 562 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=14.79;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:63:595,63,0 chrXI 367941 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.56;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2067,234,0 chrXI 368071 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.09;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1811,195,0 chrXI 368145 . C T 783 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=16.66;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:90:816,90,0 chrXI 368193 . A G 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.108;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.710;QD=16.61;ReadPosRankSum=0.824;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:98:1046,98,0 chrXI 368205 . G C 1053 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=16.45;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1086,126,0 chrXI 368244 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=17.57;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:83:99:1491,159,0 chrXI 368278 . T C 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.6025;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.183;QD=17.70;ReadPosRankSum=1.377;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1821,204,0 chrXI 368658 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2386,258,0 chrXI 369378 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=16.64;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1131,120,0 chrXI 369689 . A T 966 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=14.21;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:999,108,0 chrXI 369878 . C T 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.209;QD=22.39;ReadPosRankSum=1.078;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2429,267,0 chrXI 370412 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.28;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1331,147,0 chrXI 370478 . T C 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=2.642;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.046;QD=21.66;ReadPosRankSum=2.388;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1744,198,0 chrXI 370565 . A C 1189 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.02;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1222,138,0 chrXI 370652 . A G 1233 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.26;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1266,141,0 chrXI 370850 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.49;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1679,180,0 chrXI 370874 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.85;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1479,168,0 chrXI 370889 . A G 1369 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.56;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1402,156,0 chrXI 371060 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.53;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1347,150,0 chrXI 371345 . G A 911 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=14.93;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:944,105,0 chrXI 371456 . A T 1107 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=58.6025;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.03;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1140,126,0 chrXI 371603 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2060,222,0 chrXI 371802 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.14;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1720,189,0 chrXI 371814 . A C 1735 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.07;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1768,198,0 chrXI 372140 . T G 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=4.705;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.293;QD=15.78;ReadPosRankSum=1.626;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1059,117,0 chrXI 372141 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.55;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1109,120,0 chrXI 372443 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.65;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1115,123,0 chrXI 372458 . A G 856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.562;QD=13.59;ReadPosRankSum=1.675;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:889,99,0 chrXI 372830 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.59;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1897,204,0 chrXI 372935 . A G 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.428;QD=21.73;ReadPosRankSum=1.695;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2097,234,0 chrXI 372950 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.58;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2201,237,0 chrXI 373211 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.11;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2144,240,0 chrXI 373448 . G A 2078 SnpCluster AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=15.39;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2111,231,0 chrXI 373452 . T C 1901 SnpCluster AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=13.98;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:1934,216,0 chrXI 373454 . A G 1899 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.526;QD=13.76;ReadPosRankSum=1.706;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:1,134:138:99:1932,219,0 chrXI 373508 . C T 2592 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=14.3495;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.25;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,137:142:99:2625,279,0 chrXI 373745 . C T 3094 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.80;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3127,333,0 chrXI 374056 . A G 2153 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2186,243,0 chrXI 374207 . C A 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=129;Dels=0.00;FS=5.887;HaplotypeScore=6.8696;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.326;QD=20.02;ReadPosRankSum=-1.272;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2616,282,0 chrXI 374280 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1675,189,0 chrXI 375794 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1743;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.206;QD=18.25;ReadPosRankSum=1.691;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,83:87:99:1621,180,0 chrXI 376508 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.032;QD=21.96;ReadPosRankSum=1.654;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1987,225,0 chrXI 376620 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.88;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1657,180,0 chrXI 376721 . A G 3085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.087;QD=22.19;ReadPosRankSum=1.707;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:3118,357,0 chrXI 376929 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.56;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1758,201,0 chrXI 376943 . T C 1834 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.58;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1867,207,0 chrXI 376988 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.98;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1791,198,0 chrXI 377301 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.07;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2963,324,0 chrXI 377373 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.39;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2623,285,0 chrXI 377390 . G A 2255 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.5655;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.76;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2288,261,0 chrXI 377548 . C T 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.597;QD=20.77;ReadPosRankSum=0.801;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2588,279,0 chrXI 378038 . A G 2337 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.68;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2370,264,0 chrXI 378360 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=3.297;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.405;QD=22.80;ReadPosRankSum=1.658;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2199,252,0 chrXI 378856 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.74;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1750,198,0 chrXI 378899 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=15.81;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1661,180,0 chrXI 378901 . T G 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.429;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=1.497;QD=15.14;ReadPosRankSum=0.488;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1592,180,0 chrXI 378934 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.67;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2050,228,0 chrXI 378957 . T C 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-1.503;QD=15.26;ReadPosRankSum=1.681;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2124,240,0 chrXI 378962 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.36;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2254,252,0 chrXI 379000 . T C 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=132;Dels=0.00;FS=2.833;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-0.160;QD=18.86;ReadPosRankSum=2.412;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,129:132:99:2523,282,0 chrXI 379149 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=15.63;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1612,174,0 chrXI 379215 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=23.18;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1308,147,0 chrXI 379248 . A G 1021 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=21.72;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1054,117,0 chrXI 379287 . C G 1217 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=19.95;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1250,144,0 chrXI 379380 . C T 1332 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=16.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1365,144,0 chrXI 379432 . A G 751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=0.395;QD=15.98;ReadPosRankSum=2.345;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:2,45:47:87:784,87,0 chrXI 379495 . G T 747 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=16.98;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:84:780,84,0 chrXI 379628 . T A 676 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=17.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:81:709,81,0 chrXI 379650 . C T 572 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.82;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:66:605,66,0 chrXI 379655 . A T 540 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=14.21;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:63:573,63,0 chrXI 380602 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.87;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1799,192,0 chrXI 381019 . C A 2023 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.8071;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.73;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2056,225,0 chrXI 381058 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.9509;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.80;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1863,207,0 chrXI 381640 . T C 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.620;QD=22.85;ReadPosRankSum=1.658;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2158,237,0 chrXI 381664 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.55;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2129,228,0 chrXI 381721 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.1954;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=16.92;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1793,201,0 chrXI 382357 . C T 517 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.07;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:60:550,60,0 chrXI 382857 . T C 1136 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1169,129,0 chrXI 383052 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.82;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1971,222,0 chrXI 383133 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.393;QD=19.24;ReadPosRankSum=1.657;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1803,210,0 chrXI 383532 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=15.73;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1213,141,0 chrXI 383538 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=16.77;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1190,132,0 chrXI 383706 . T C 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=122;Dels=0.00;FS=3.869;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.288;QD=17.33;ReadPosRankSum=1.703;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,116:122:99:2147,243,0 chrXI 384068 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.39;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1702,195,0 chrXI 384196 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.09;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2381,255,0 chrXI 384228 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.2340;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.71;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2260,240,0 chrXI 384453 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.62;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2182,243,0 chrXI 384774 . T C 1655 filter AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1688,189,0 chrXI 385688 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.27;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1859,198,0 chrXI 385714 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.27;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1604,180,0 chrXI 385769 . T A 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=70;Dels=0.00;FS=17.520;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.841;QD=18.54;ReadPosRankSum=2.900;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1331,144,0 chrXI 385811 . G A 1177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=4.694;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.423;QD=21.02;ReadPosRankSum=0.371;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1210,113,0 chrXI 385829 . C T 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.094;QD=20.78;ReadPosRankSum=-1.543;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1176,108,0 chrXI 385892 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.90;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1329,147,0 chrXI 386072 . C G 1046 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.74;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1079,123,0 chrXI 386153 . A C 1326 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.47;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1359,150,0 chrXI 387120 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.61;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1927,204,0 chrXI 387327 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-5.199;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=57.6519;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.192;QD=0.27;ReadPosRankSum=-4.658;SB=1.24 GT:AD:DP:GQ:PL 1/1:53,12:65:6:49,6,0 chrXI 387796 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.65;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1878,201,0 chrXI 388272 . G A 2110 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.29;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2143,231,0 chrXI 388314 . A C 1816 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.12;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1849,207,0 chrXI 388737 . A G 2257 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.70;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2290,252,0 chrXI 388983 . C T 2853 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.5638;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.95;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2886,312,0 chrXI 389051 . A T 3995.01 PASS AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.92;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,167:167:99:3995,429,0 chrXI 389059 . A G 3596.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=22.76;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3596,402,0 chrXI 389074 . A G 2934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=4.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.676;QD=20.81;ReadPosRankSum=1.708;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:2967,333,0 chrXI 389086 . T A 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-0.816;QD=18.88;ReadPosRankSum=1.703;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2317,255,0 chrXI 389148 . A G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.462;QD=18.93;ReadPosRankSum=1.675;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1169,129,0 chrXI 389275 . G C 2686 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.02;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2719,300,0 chrXI 389357 . T C 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.267;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-1.453;QD=22.60;ReadPosRankSum=1.653;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1999,222,0 chrXI 389917 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.250;QD=20.47;ReadPosRankSum=1.688;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1650,183,0 chrXI 389926 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=6.173;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-2.105;QD=20.22;ReadPosRankSum=2.710;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1792,201,0 chrXI 390146 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.60;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2052,228,0 chrXI 390230 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.214;QD=23.11;ReadPosRankSum=1.693;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2090,234,0 chrXI 390540 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.57;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1730,183,0 chrXI 390679 . C A 1863 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1896,201,0 chrXI 390834 . T G 1362 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.64;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1395,156,0 chrXI 391146 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.33;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1529,165,0 chrXI 391710 . A T 1895 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.38;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1928,207,0 chrXI 391885 . T C 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=160;Dels=0.00;FS=3.021;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.052;QD=20.12;ReadPosRankSum=2.388;SB=-1.864e+03 GT:AD:DP:GQ:PL 1/1:2,158:160:99:3252,366,0 chrXI 392142 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.25;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1672,189,0 chrXI 392317 . T C 574 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=7.17;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,79:80:69:607,69,0 chrXI 392532 . G T 2363 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3090;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.61;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2396,264,0 chrXI 393129 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.78;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2090,228,0 chrXI 393245 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.9067;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.12;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2193,246,0 chrXI 393718 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1597,180,0 chrXI 394215 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.119;QD=20.25;ReadPosRankSum=1.590;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1511,174,0 chrXI 394272 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.24;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1990,216,0 chrXI 394294 . G C 2125 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.63;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2158,243,0 chrXI 394878 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.46;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1192,132,0 chrXI 395025 . A C 1952 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.24;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1985,222,0 chrXI 395041 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.05;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2198,234,0 chrXI 395260 . C A 2174 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.24;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2207,246,0 chrXI 395283 . G A 2216 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.79;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2249,243,0 chrXI 395287 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.17;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2237,249,0 chrXI 395389 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.61;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1688,186,0 chrXI 395416 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.86;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1319,144,0 chrXI 395440 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=17.00;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1376,153,0 chrXI 395566 . A G 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=2.951;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-1.231;QD=16.56;ReadPosRankSum=2.399;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1639,180,0 chrXI 395584 . G T 1349 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=15.51;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1382,150,0 chrXI 396469 . G T 2225 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=14.5937;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.52;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2258,243,0 chrXI 396726 . C G 2713 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.10;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2746,309,0 chrXI 396781 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.9874;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.24;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3129,351,0 chrXI 397099 . T G 1993 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.73;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2026,225,0 chrXI 397137 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.98;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1831,204,0 chrXI 397277 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=131;Dels=0.00;FS=12.118;HaplotypeScore=3.3861;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.008;QD=17.25;ReadPosRankSum=3.751;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:5,123:131:99:2293,255,0 chrXI 397278 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=16.84;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2206,246,0 chrXI 397635 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.39;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1562,171,0 chrXI 397717 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.43;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1361,147,0 chrXI 397745 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.48;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1733,186,0 chrXI 397947 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6005;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.93;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2160,234,0 chrXI 398874 . C G 1764 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1797,198,0 chrXI 399177 . G C 1352 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.80;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1385,159,0 chrXI 399625 . G T 1916 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.28;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1949,210,0 chrXI 399642 . T C 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.744;DP=98;Dels=0.00;FS=11.239;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.416;QD=19.62;ReadPosRankSum=3.598;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:5,92:98:99:1956,228,0 chrXI 399858 . T C 1975 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2008,225,0 chrXI 399930 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.519;QD=18.34;ReadPosRankSum=1.679;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1225,138,0 chrXI 399936 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=17.29;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1278,141,0 chrXI 399948 . T C 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.253;QD=17.15;ReadPosRankSum=1.690;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1439,162,0 chrXI 399987 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=15.52;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1601,171,0 chrXI 400014 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.68;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1976,219,0 chrXI 400068 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.51;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2485,279,0 chrXI 400341 . C T 2962 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.28;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2995,330,0 chrXI 400521 . G A 2611 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.08;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2644,297,0 chrXI 401736 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.0145;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.78;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2099,231,0 chrXI 401769 . C G 1881 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.4905;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.39;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1914,216,0 chrXI 401778 . C G 1926 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.65;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1959,213,0 chrXI 401890 . C G 1770 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.67;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1803,198,0 chrXI 402603 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=12.0137;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.87;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3276,369,0 chrXI 403063 . T G 2463 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.70;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2496,291,0 chrXI 403407 . G T 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.641;QD=17.45;ReadPosRankSum=1.611;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2040,225,0 chrXI 403926 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=3.702;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.222;QD=17.82;ReadPosRankSum=1.678;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2349,261,0 chrXI 404344 . A G 2794 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.1977;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.54;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2827,315,0 chrXI 404696 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.01;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1948,213,0 chrXI 404773 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.7979;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=22.84;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2819,303,0 chrXI 405361 . A C 1200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.962;QD=19.05;ReadPosRankSum=1.677;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1233,138,0 chrXI 405844 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.77;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2101,228,0 chrXI 405871 . C G 2007 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.58;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2040,225,0 chrXI 405904 . G A 1972 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2005,222,0 chrXI 406042 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.96;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1650,183,0 chrXI 406060 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.77;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1778,192,0 chrXI 406357 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.49;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1161,129,0 chrXI 406489 . A G 593 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.97;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:72:626,72,0 chrXI 406501 . T C 583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.313;QD=17.15;ReadPosRankSum=1.523;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:69:616,69,0 chrXI 406946 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.87;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1285,135,0 chrXI 407067 . A G 1943 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1976,222,0 chrXI 407274 . A G 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.531;QD=17.59;ReadPosRankSum=1.632;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1247,138,0 chrXI 407314 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1553,174,0 chrXI 407572 . T C 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=2.982;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.524;QD=19.25;ReadPosRankSum=2.367;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1169,129,0 chrXI 407765 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.12;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1827,198,0 chrXI 408123 . A T 2218 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.49;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2251,243,0 chrXI 408244 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.80;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1903,204,0 chrXI 408275 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.459;QD=20.24;ReadPosRankSum=2.396;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1895,216,0 chrXI 408636 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.76;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1773,204,0 chrXI 408966 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1696,189,0 chrXI 409121 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.06;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2018,219,0 chrXI 409333 . A G 930 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.14;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:963,108,0 chrXI 409377 . C T 996 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.65;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1029,114,0 chrXI 409429 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.19;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1177,129,0 chrXI 409936 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.17;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1400,153,0 chrXI 409950 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.20;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1476,159,0 chrXI 410208 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.24;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1383,150,0 chrXI 410220 . T C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=80;Dels=0.00;FS=2.994;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.806;QD=19.86;ReadPosRankSum=2.355;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:2,76:80:99:1622,180,0 chrXI 410250 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.59;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1855,204,0 chrXI 410346 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.60;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1887,210,0 chrXI 410472 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.481;QD=20.17;ReadPosRankSum=1.682;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1425,156,0 chrXI 410634 . G A 2687 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.16;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2720,294,0 chrXI 410677 . A G 2529 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.56;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2562,288,0 chrXI 410877 . C T 2752 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.93;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2785,306,0 chrXI 410991 . A G 2205 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.42;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2238,255,0 chrXI 410995 . T C 2034 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.37;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2067,231,0 chrXI 411059 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.73;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1575,168,0 chrXI 411060 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=14.70;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1488,165,0 chrXI 411118 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.52;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2478,264,0 chrXI 411643 . A G 2325 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.57;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2358,273,0 chrXI 412504 . A G 1498 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.71;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1531,171,0 chrXI 412834 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1831,201,0 chrXI 413234 . A T 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.0027;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.696;QD=21.67;ReadPosRankSum=1.588;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2113,231,0 chrXI 413439 . G T 2258 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2291,246,0 chrXI 413937 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.44;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1608,177,0 chrXI 414688 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.16;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2205,249,0 chrXI 415219 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.36;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1373,156,0 chrXI 415240 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.56;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1402,156,0 chrXI 415279 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.20;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1467,162,0 chrXI 415294 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5619;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.70;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1550,171,0 chrXI 415378 . A C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.169;QD=21.84;ReadPosRankSum=1.648;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1824,207,0 chrXI 415542 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=52;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.277;QD=21.02;ReadPosRankSum=1.663;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,49:52:99:1126,126,0 chrXI 416349 . A T 1604 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.39;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1637,177,0 chrXI 416398 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1579,183,0 chrXI 417115 . C G 1603 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.2300;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.96;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1636,183,0 chrXI 417757 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.01;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1654,189,0 chrXI 418093 . T A 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.43;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1586,174,0 chrXI 418969 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.2761;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.03;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1275,147,0 chrXI 420218 . A G 491 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:524,60,0 chrXI 422897 . A G 747 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.15;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:780,87,0 chrXI 423496 . A T 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.24;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1255,141,0 chrXI 423977 . A G 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=88;Dels=0.00;FS=12.884;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.593;QD=21.11;ReadPosRankSum=2.919;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:3,84:88:99:1891,213,0 chrXI 424151 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.24;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1730,186,0 chrXI 424217 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:69:99:1390,153,0 chrXI 424283 . T C 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.201;QD=20.21;ReadPosRankSum=1.692;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1771,201,0 chrXI 424564 . C T 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.032;QD=22.00;ReadPosRankSum=-0.525;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,88:91:99:2035,195,0 chrXI 424829 . C T 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;DP=79;Dels=0.00;FS=4.449;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.755;QD=19.49;ReadPosRankSum=-1.332;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1573,147,0 chrXI 425593 . T C 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=6.135;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.653;QD=19.37;ReadPosRankSum=2.300;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2261,258,0 chrXI 427165 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.2857;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.76;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1672,177,0 chrXI 427367 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1436,165,0 chrXI 427643 . A T 1875 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1908,213,0 chrXI 427808 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=3.693;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.260;QD=21.47;ReadPosRankSum=1.638;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2416,267,0 chrXI 427982 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.6455;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.44;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,87:91:99:1893,201,0 chrXI 428217 . C T 2832 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.66;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2865,303,0 chrXI 429021 . C T 421 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=16.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:51:454,51,0 chrXI 429131 . C T 948 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.70;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:981,108,0 chrXI 429886 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.86;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1656,183,0 chrXI 429958 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1211,132,0 chrXI 430806 . A T 2100 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.59;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2133,228,0 chrXI 430859 . T C 2335 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.03;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2368,264,0 chrXI 430903 . G T 2093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=3.4435;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.696;QD=21.80;ReadPosRankSum=0.036;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2126,234,0 chrXI 431173 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2112,231,0 chrXI 431610 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.15;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1154,132,0 chrXI 431684 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.75;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:800,87,0 chrXI 431700 . C T 671 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=14.59;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:704,78,0 chrXI 431704 . A G 706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=0.485;QD=14.12;ReadPosRankSum=1.594;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:84:739,84,0 chrXI 431740 . C G 1368 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.00;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1401,153,0 chrXI 432073 . G A 781 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.11;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:814,87,0 chrXI 432094 . A T 1009 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.02;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1042,111,0 chrXI 432344 . A T 513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.529;QD=15.09;ReadPosRankSum=1.631;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:63:546,63,0 chrXI 432569 . C G 330 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=1;QD=23.57;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:39:363,39,0 chrXI 432748 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.30;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1438,159,0 chrXI 432872 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=18.69;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:949,111,0 chrXI 432873 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=19.88;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1007,111,0 chrXI 432997 . G A 1177 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.54;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1210,129,0 chrXI 433171 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.98;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1192,138,0 chrXI 433276 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.50;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1293,138,0 chrXI 433489 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.470;QD=23.98;ReadPosRankSum=1.680;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1616,174,0 chrXI 433630 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.08;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1338,150,0 chrXI 433660 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=16.17;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1327,150,0 chrXI 433721 . A G 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.396;QD=16.44;ReadPosRankSum=-0.346;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1184,113,0 chrXI 433722 . T A 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.195;QD=18.63;ReadPosRankSum=1.683;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1356,144,0 chrXI 433806 . T C 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;DP=73;Dels=0.00;FS=5.716;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.296;QD=19.22;ReadPosRankSum=2.903;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:3,69:73:99:1436,159,0 chrXI 433902 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.40;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1003,111,0 chrXI 433909 . T C 719 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.12;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:752,84,0 chrXI 434756 . A G 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.131;QD=16.72;ReadPosRankSum=1.601;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1805,204,0 chrXI 436802 . A C 1521 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=11.88;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:128:99:1554,174,0 chrXI 436933 . A T 2915 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.08;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2948,318,0 chrXI 436938 . T G 2354 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.21;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2387,267,0 chrXI 437047 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=2.891;HaplotypeScore=6.8358;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.077;QD=19.97;ReadPosRankSum=2.265;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1631,186,0 chrXI 437150 . A T 2268 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=19.38;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2301,258,0 chrXI 437157 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.50;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2393,258,0 chrXI 437524 . T G 1689 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.60;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1722,192,0 chrXI 437645 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.33;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1273,141,0 chrXI 438455 . C G 542 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=14.26;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:63:575,63,0 chrXI 438581 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=14.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:66:620,66,0 chrXI 438605 . C T 399 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=13.76;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:48:432,48,0 chrXI 439411 . A T 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=62;Dels=0.00;FS=2.634;HaplotypeScore=4.2524;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.764;QD=16.55;ReadPosRankSum=2.849;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:99:1059,117,0 chrXI 439704 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.84;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1144,126,0 chrXI 439850 . A C 1188 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.56;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1221,141,0 chrXI 439973 . G A 524 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=12.78;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:60:557,60,0 chrXI 439977 . T A 404 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=10.92;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:48:437,48,0 chrXI 440084 . G A 1308 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1341,144,0 chrXI 440171 . G A 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=1.25;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,15:15:6:50,6,0 chrXI 440299 . A G 2097 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2130,237,0 chrXI 440388 . T C 1478 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.440;QD=25.05;ReadPosRankSum=1.674;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1511,171,0 chrXI 440556 . G A 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0064;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.080;QD=22.29;ReadPosRankSum=1.569;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1950,207,0 chrXI 441355 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.074;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.617;QD=20.35;ReadPosRankSum=2.301;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1376,156,0 chrXI 441955 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.79;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1776,198,0 chrXI 442302 . T G 2273 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8586;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.05;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2306,258,0 chrXI 442420 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.36;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1756,186,0 chrXI 442829 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1267,138,0 chrXI 443009 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1330,144,0 chrXI 443215 . C G 1199 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.62;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1232,138,0 chrXI 443630 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.95;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1227,141,0 chrXI 445069 . T A 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.145;QD=23.02;ReadPosRankSum=1.615;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1460,156,0 chrXI 445342 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.32;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1577,180,0 chrXI 445854 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.90;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1577,174,0 chrXI 446016 . C G 1873 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.30;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1906,219,0 chrXI 446463 . A G 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.236;QD=17.72;ReadPosRankSum=1.693;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1592,177,0 chrXI 446566 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.21;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1327,150,0 chrXI 446746 . T A 1031 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.62;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1064,114,0 chrXI 446891 . G A 493 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.72;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:526,57,0 chrXI 446892 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.43;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,25:28:57:521,57,0 chrXI 447051 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.81;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2040,225,0 chrXI 447730 . T C 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.000;QD=21.47;ReadPosRankSum=1.683;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1536,174,0 chrXI 448103 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.09;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:982,111,0 chrXI 448340 . C A 2427 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.86;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2460,264,0 chrXI 448425 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.84;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1845,198,0 chrXI 448481 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.82;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1425,159,0 chrXI 448511 . G C 1320 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.29;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1353,159,0 chrXI 448952 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.13;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1266,138,0 chrXI 448966 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.14;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1267,135,0 chrXI 449097 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.03;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1259,147,0 chrXI 449124 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=16.11;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1354,147,0 chrXI 449136 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=16.01;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1458,159,0 chrXI 449167 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.45;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1546,165,0 chrXI 449192 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.23;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1480,165,0 chrXI 449253 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4136;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.76;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1382,153,0 chrXI 449350 . T G 989 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.66;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1022,117,0 chrXI 449495 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.49;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1817,195,0 chrXI 449649 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=6.879;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.026;QD=22.69;ReadPosRankSum=1.990;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1372,153,0 chrXI 449753 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.68;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1659,183,0 chrXI 450210 . C A 1785 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.06;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1818,195,0 chrXI 450846 . C A 1934 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.73;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1967,213,0 chrXI 450921 . A G 1947 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.49;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1980,225,0 chrXI 450942 . A T 1766 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6684;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.79;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1799,198,0 chrXI 450979 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.15;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1524,171,0 chrXI 451012 . G T 1578 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.23;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1611,174,0 chrXI 451041 . T C 1504 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.53;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1537,168,0 chrXI 451283 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.8315;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.68;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2629,285,0 chrXI 451308 . C G 1701 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3717;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=16.05;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1734,198,0 chrXI 451419 . A G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=81;Dels=0.00;FS=5.491;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.213;QD=18.74;ReadPosRankSum=2.863;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1551,174,0 chrXI 451772 . T C 1132 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.21;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1165,135,0 chrXI 453136 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.08;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1487,165,0 chrXI 453381 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.24;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1389,159,0 chrXI 453487 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.51;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1856,204,0 chrXI 453612 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.03;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1735,192,0 chrXI 454007 . A G 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.9170;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.102;QD=20.02;ReadPosRankSum=-0.962;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2015,202,0 chrXI 454594 . T C 2239 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.34;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2272,252,0 chrXI 455402 . A G 1103 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.22;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1136,129,0 chrXI 455417 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.60;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1230,129,0 chrXI 455430 . C T 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.732;QD=16.94;ReadPosRankSum=0.560;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1134,101,0 chrXI 455903 . A C 1707 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.07;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1740,198,0 chrXI 456143 . T A 1308 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=16.56;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1341,153,0 chrXI 456179 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.16;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1850,204,0 chrXI 456602 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.03;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1400,159,0 chrXI 456734 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.73;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1771,201,0 chrXI 456866 . T C 1152 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.00;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1185,132,0 chrXI 457446 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=17.90;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1268,141,0 chrXI 457465 . G C 1157 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=17.80;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1190,135,0 chrXI 457475 . G A 1140 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.52;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1173,123,0 chrXI 457579 . C A 1589 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.14;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1622,177,0 chrXI 457680 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.24;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1612,168,0 chrXI 457702 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.65;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1413,162,0 chrXI 457721 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=63.7895;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.87;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1335,147,0 chrXI 457806 . G T 2186 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=21.64;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2219,237,0 chrXI 457807 . G C 2044 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=20.24;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2077,237,0 chrXI 457826 . G T 2277 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=20.15;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2310,261,0 chrXI 457893 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;MQRankSum=-0.466;QD=20.65;ReadPosRankSum=1.695;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1995,222,0 chrXI 458781 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.31;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1461,159,0 chrXI 458817 . T C 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.025;QD=21.20;ReadPosRankSum=1.682;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1496,168,0 chrXI 459142 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1380,159,0 chrXI 459200 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:915,99,0 chrXI 459630 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.74;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1885,204,0 chrXI 459646 . A C 1755 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.50;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1788,198,0 chrXI 459753 . G A 2090 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2123,234,0 chrXI 460022 . A G 1811 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.47;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1844,207,0 chrXI 460324 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.12;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1446,153,0 chrXI 460331 . C G 1258 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=6.3190;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=15.92;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1291,147,0 chrXI 460360 . T C 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.00;FS=3.582;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.973;QD=11.92;ReadPosRankSum=1.637;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:915,102,0 chrXI 460364 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=12.47;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:968,102,0 chrXI 460537 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.78;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1457,165,0 chrXI 461157 . T G 1477 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1510,171,0 chrXI 461216 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5949;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1929,204,0 chrXI 461628 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.66;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1755,186,0 chrXI 462364 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.40;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1646,180,0 chrXI 462622 . T G 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.89;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,138,0 chrXI 462779 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.46;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1399,153,0 chrXI 462789 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.85;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1300,144,0 chrXI 462819 . G A 1056 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.00;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1089,120,0 chrXI 462985 . T A 1114 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.2454;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.14;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1147,126,0 chrXI 463058 . A T 1290 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.48;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1323,147,0 chrXI 463364 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.22;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2123,231,0 chrXI 463472 . T A 1491 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.87;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1524,165,0 chrXI 463630 . T C 857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=74;Dels=0.00;FS=4.861;HaplotypeScore=7.8607;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=-0.017;QD=11.58;ReadPosRankSum=1.639;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:890,102,0 chrXI 463660 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=17.00;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1546,165,0 chrXI 463824 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.42;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2059,231,0 chrXI 463936 . T C 2108 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.51;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2141,243,0 chrXI 464063 . A C 1168 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.70;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1201,138,0 chrXI 464192 . A G 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.015;DP=116;Dels=0.00;FS=1.943;HaplotypeScore=9.0540;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.908;QD=19.34;ReadPosRankSum=2.816;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:4,112:116:99:2277,252,0 chrXI 464447 . C T 89.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.106;DP=108;Dels=0.00;FS=2.826;HaplotypeScore=49.0941;MLEAC=1;MLEAF=0.500;MQ=44.27;MQ0=0;MQRankSum=-3.065;QD=0.82;ReadPosRankSum=1.172;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/1:64,42:108:99:119,0,739 chrXI 464453 . T C 1002 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=53.0725;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=9.82;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1035,114,0 chrXI 464465 . T C 221.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DP=102;Dels=0.00;FS=2.031;HaplotypeScore=52.7621;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=0;MQRankSum=-0.036;QD=2.17;ReadPosRankSum=-3.387;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:77,24:102:89:251,0,89 chrXI 464477 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;DP=100;Dels=0.00;FS=1.925;HaplotypeScore=9.4707;MLEAC=1;MLEAF=0.500;MQ=43.08;MQ0=0;MQRankSum=-1.835;QD=0.20;ReadPosRankSum=-6.706;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:72,27:100:50:50,0,514 chrXI 464717 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.00;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1818,201,0 chrXI 464863 . A C 1161 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.12;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1194,135,0 chrXI 465319 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.54;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1024,117,0 chrXI 465951 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1556,174,0 chrXI 466582 . C A 2142 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.65;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2175,240,0 chrXI 466837 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4444;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.60;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2567,285,0 chrXI 466913 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.96;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2066,234,0 chrXI 466940 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.53;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1691,186,0 chrXI 466941 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.06;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1655,186,0 chrXI 467162 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.05;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1276,144,0 chrXI 467237 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=17.13;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1249,135,0 chrXI 467243 . T C 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.831;QD=16.42;ReadPosRankSum=1.685;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1232,138,0 chrXI 467328 . T C 2377 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.08;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2410,273,0 chrXI 467399 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.599;QD=20.03;ReadPosRankSum=1.688;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1595,180,0 chrXI 467504 . G C 1722 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.75;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1755,201,0 chrXI 467564 . T G 2112 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.3961;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.77;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2145,243,0 chrXI 467627 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.73;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1887,204,0 chrXI 467666 . A C 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.648;QD=18.69;ReadPosRankSum=1.672;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2182,246,0 chrXI 467684 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.47;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1825,201,0 chrXI 467771 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.28;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1757,195,0 chrXI 468077 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.56;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1205,129,0 chrXI 468315 . A T 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=77;Dels=0.00;FS=5.663;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.188;QD=18.70;ReadPosRankSum=1.683;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1473,162,0 chrXI 468458 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:778,87,0 chrXI 468684 . C A 1481 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=64.6956;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.28;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1514,168,0 chrXI 468708 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.53;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1386,150,0 chrXI 468928 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.80;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1080,114,0 chrXI 469130 . C T 2180 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.02;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2213,243,0 chrXI 469133 . G A 2212 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=23.04;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2245,237,0 chrXI 469134 . C T 2067 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.23;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2100,234,0 chrXI 469182 . T C 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.299;QD=13.66;ReadPosRankSum=1.678;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:907,99,0 chrXI 469258 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.43;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1194,132,0 chrXI 469355 . G T 2867 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.2225;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.40;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2900,309,0 chrXI 469480 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.05;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1393,156,0 chrXI 469538 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.83;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1158,129,0 chrXI 469561 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.37;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1025,108,0 chrXI 469692 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=4.141;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.541;QD=21.55;ReadPosRankSum=1.696;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2145,237,0 chrXI 469719 . G C 2395 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.30;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,113:118:99:2428,276,0 chrXI 469831 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.33;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1517,162,0 chrXI 470065 . C G 1949 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.52;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1982,219,0 chrXI 470487 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.46;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1123,123,0 chrXI 470511 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.41;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1353,153,0 chrXI 470556 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=84;Dels=0.00;FS=5.757;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.842;QD=18.73;ReadPosRankSum=2.916;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1606,180,0 chrXI 470607 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.54;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1869,201,0 chrXI 470676 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=18.57;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1463,165,0 chrXI 470697 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=17.60;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1230,135,0 chrXI 470858 . G C 1229 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.83;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1262,141,0 chrXI 471138 . A G 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.763;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.866;QD=19.89;ReadPosRankSum=1.693;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1783,207,0 chrXI 471237 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.20;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1307,147,0 chrXI 471365 . T G 1019 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.23;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1052,117,0 chrXI 471379 . C A 1131 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.85;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1164,123,0 chrXI 471663 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.42;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1368,144,0 chrXI 471817 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.93;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1396,156,0 chrXI 471840 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.53;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1614,171,0 chrXI 472114 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.56;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1801,201,0 chrXI 472699 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9084;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.60;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2316,258,0 chrXI 472885 . T C 3551.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;QD=22.76;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3551,402,0 chrXI 472945 . C T 2859 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.28;SB=-1.784e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2892,318,0 chrXI 473123 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.90;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2341,258,0 chrXI 473430 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.95;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1562,174,0 chrXI 473650 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=8.0198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.44;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1811,195,0 chrXI 473897 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.19;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1431,156,0 chrXI 474020 . T C 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=90;Dels=0.00;FS=5.787;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.198;QD=21.01;ReadPosRankSum=2.919;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:3,84:90:99:1924,213,0 chrXI 474395 . G A 2586 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=12.0271;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.51;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2619,282,0 chrXI 474475 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=5.3928;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.94;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2227,234,0 chrXI 474620 . A T 2175 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.75;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2208,240,0 chrXI 474932 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=17.45;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1918,213,0 chrXI 474947 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=15.38;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1617,183,0 chrXI 474977 . T C 1910 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1373;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=17.52;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1943,219,0 chrXI 475354 . T G 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=58;Dels=0.00;FS=7.064;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.129;QD=15.55;ReadPosRankSum=2.365;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:935,105,0 chrXI 475376 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=15.34;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:984,111,0 chrXI 475412 . A G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.356;QD=17.50;ReadPosRankSum=1.163;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1328,147,0 chrXI 475709 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.39;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1287,135,0 chrXI 475733 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.92;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1206,129,0 chrXI 475940 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.00;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1273,144,0 chrXI 476134 . A T 2342 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.19;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2375,255,0 chrXI 476390 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1928,222,0 chrXI 476611 . T A 2882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.773;QD=22.00;ReadPosRankSum=1.679;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2915,312,0 chrXI 476936 . A G 2577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.4486;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.361;QD=18.54;ReadPosRankSum=1.707;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2610,288,0 chrXI 477085 . A T 2475 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=14.6053;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.19;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2508,273,0 chrXI 477203 . T C 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=4.554;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.222;QD=17.34;ReadPosRankSum=1.673;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2062,243,0 chrXI 477206 . A G 2298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.310;QD=18.68;ReadPosRankSum=1.676;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2331,264,0 chrXI 477359 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=14.3286;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.51;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1668,180,0 chrXI 477518 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.11;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1464,156,0 chrXI 477617 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.30;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1175,129,0 chrXI 477692 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1637,177,0 chrXI 477914 . C G 2135 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.14;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2168,246,0 chrXI 478037 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.55;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1533,171,0 chrXI 478176 . G T 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.184;HaplotypeScore=10.1295;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.528;QD=20.54;ReadPosRankSum=0.442;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2190,237,0 chrXI 478313 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.43;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1619,180,0 chrXI 478550 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.29;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1606,183,0 chrXI 478766 . A T 1782 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.56;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1815,201,0 chrXI 478973 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.77;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1757,189,0 chrXI 479187 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.39;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2086,240,0 chrXI 479380 . A G 1434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=80;Dels=0.00;FS=2.476;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.857;QD=17.92;ReadPosRankSum=1.871;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:3,75:80:99:1467,145,0 chrXI 479521 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.41;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1981,225,0 chrXI 479723 . G T 1266 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.46;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1299,138,0 chrXI 480455 . A C 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.133;QD=22.52;ReadPosRankSum=1.689;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1857,213,0 chrXI 480529 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.97;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1333,144,0 chrXI 480613 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.46;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1511,162,0 chrXI 480637 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.05;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1312,150,0 chrXI 480844 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.97;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1411,159,0 chrXI 481138 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.56;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1585,177,0 chrXI 481321 . A T 1834 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.10;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1867,204,0 chrXI 482141 . C T 3004 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.76;SB=-1.831e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3037,342,0 chrXI 482154 . A G 2567 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.47;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2600,294,0 chrXI 482182 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=15.96;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1469,168,0 chrXI 482277 . C G 1385 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.97;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1418,159,0 chrXI 482428 . T C 2503 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6520;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.52;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2536,282,0 chrXI 482863 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.33;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1922,213,0 chrXI 482864 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.25;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1930,213,0 chrXI 482900 . A G 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=117;Dels=0.00;FS=9.724;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-1.371;QD=16.67;ReadPosRankSum=2.837;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:1983,222,0 chrXI 483005 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.47;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1879,204,0 chrXI 483350 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.87;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1817,201,0 chrXI 483589 . G T 1690 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1723,186,0 chrXI 483682 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.81;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2072,225,0 chrXI 483717 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.78;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1710,183,0 chrXI 483740 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.97;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1435,156,0 chrXI 483771 . A T 933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=5.315;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.681;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:966,105,0 chrXI 483783 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=11.81;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:824,90,0 chrXI 483809 . T C 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=-1.676;QD=12.73;ReadPosRankSum=1.676;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:90:822,90,0 chrXI 483815 . C G 630 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=10.86;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:75:663,75,0 chrXI 483858 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=16.73;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1070,114,0 chrXI 484132 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.07;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1644,183,0 chrXI 484168 . A T 1708 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=21.62;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1741,192,0 chrXI 484393 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.74;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1900,213,0 chrXI 484474 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.86;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1847,204,0 chrXI 484732 . T C 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=113;Dels=0.00;FS=7.674;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.796;QD=19.92;ReadPosRankSum=2.384;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2284,258,0 chrXI 484810 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.08;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2200,237,0 chrXI 484887 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.45;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:937,105,0 chrXI 484924 . C T 781 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.98;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:814,90,0 chrXI 484948 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.65;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1251,144,0 chrXI 485195 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.72;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1358,147,0 chrXI 485584 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.80;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2217,237,0 chrXI 485906 . A G 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.799;QD=20.94;ReadPosRankSum=1.699;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2211,246,0 chrXI 486335 . C T 2518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.327;QD=23.75;ReadPosRankSum=1.177;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2551,276,0 chrXI 486368 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.56;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2154,234,0 chrXI 486393 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.00;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1818,204,0 chrXI 486704 . A G 2393 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.16;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2426,273,0 chrXI 487095 . G C 2092 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7308;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.51;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2125,237,0 chrXI 487179 . C A 2049 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.57;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2082,219,0 chrXI 487361 . T A 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=6.070;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.148;QD=16.79;ReadPosRankSum=1.693;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1544,168,0 chrXI 487615 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:2174,240,0 chrXI 487734 . A G 2424 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2457,279,0 chrXI 487769 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2140,228,0 chrXI 488000 . G T 1866 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.44;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1899,210,0 chrXI 488186 . A G 3118 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.21;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3151,360,0 chrXI 488282 . A G 2658 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.96;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:2691,306,0 chrXI 488294 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.27;SB=-1.908e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2755,300,0 chrXI 488339 . T C 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=113;Dels=0.00;FS=2.782;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.648;QD=17.58;ReadPosRankSum=2.384;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2019,228,0 chrXI 488573 . A G 2832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.2792;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.417;QD=20.67;ReadPosRankSum=1.707;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2865,324,0 chrXI 488882 . A G 2139 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.83;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2172,240,0 chrXI 489665 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=22.46;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1650,177,0 chrXI 489715 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=21.94;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1920,216,0 chrXI 489732 . A T 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=20.82;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1699,189,0 chrXI 489820 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=13.7076;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=15.14;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1108,120,0 chrXI 489879 . A T 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=66;Dels=0.02;FS=4.260;HaplotypeScore=15.1655;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.379;QD=19.71;ReadPosRankSum=1.678;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1334,150,0 chrXI 489903 . T G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.815;QD=21.12;ReadPosRankSum=1.681;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1469,168,0 chrXI 489952 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=18.49;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1568,177,0 chrXI 490017 . A G 1077 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=45.2653;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=15.39;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1110,126,0 chrXI 490084 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.98;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1332,144,0 chrXI 490208 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.602;QD=22.45;ReadPosRankSum=1.694;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2098,237,0 chrXI 490246 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.2371;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.96;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2229,243,0 chrXI 490284 . G T 1571 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=9.9997;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=18.70;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1604,177,0 chrXI 490311 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=14.98;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1381,159,0 chrXI 490312 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=14.97;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1410,159,0 chrXI 490335 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=12.07;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1264,150,0 chrXI 490356 . T A 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=98;Dels=0.00;FS=2.554;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;MQRankSum=-0.082;QD=14.78;ReadPosRankSum=2.867;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1481,159,0 chrXI 490374 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=5.298;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=1.567;QD=16.60;ReadPosRankSum=1.699;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1776,207,0 chrXI 490506 . A T 2297 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.14;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2330,255,0 chrXI 490531 . G T 2618 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.61;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2651,291,0 chrXI 490578 . A G 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=128;Dels=0.00;FS=5.808;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=-0.661;QD=20.95;ReadPosRankSum=2.740;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:3,125:128:99:2715,303,0 chrXI 490671 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.41;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1837,198,0 chrXI 490776 . A C 1840 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.78;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1873,210,0 chrXI 490933 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=21.09;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1151,126,0 chrXI 490945 . T A 892 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=21.76;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:925,99,0 chrXI 490946 . T C 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=7.202;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-1.073;QD=20.14;ReadPosRankSum=1.650;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:879,99,0 chrXI 491090 . A G 1102 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.61;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1135,126,0 chrXI 491161 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.80;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1150,129,0 chrXI 491191 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:866,93,0 chrXI 491306 . T C 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.654;QD=22.36;ReadPosRankSum=2.367;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1352,153,0 chrXI 491405 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1323,141,0 chrXI 491873 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.059;QD=21.41;ReadPosRankSum=1.684;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1596,183,0 chrXI 492251 . T C 1875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=102;Dels=0.00;FS=2.686;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.943;QD=18.38;ReadPosRankSum=2.401;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1908,213,0 chrXI 492262 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.71;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1807,195,0 chrXI 493329 . T C 1678 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.66;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1711,189,0 chrXI 493442 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1349,147,0 chrXI 493646 . A C 513 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=13.86;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:546,60,0 chrXI 494125 . C A 1750 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1783,201,0 chrXI 494238 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.16;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2116,234,0 chrXI 494331 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.01;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1462,156,0 chrXI 494571 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.44;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2187,240,0 chrXI 494622 . T A 2207 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.07;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2240,240,0 chrXI 495036 . C T 2849 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2882,309,0 chrXI 495081 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.66;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2481,270,0 chrXI 495507 . T C 2419 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.61;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2452,279,0 chrXI 495714 . T C 1903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;DP=96;Dels=0.00;FS=4.214;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.346;QD=19.82;ReadPosRankSum=1.696;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1936,216,0 chrXI 495985 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=23.46;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1886,207,0 chrXI 496005 . A G 1768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=1.510;QD=22.67;ReadPosRankSum=0.844;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1801,204,0 chrXI 496131 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.96;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1569,180,0 chrXI 496185 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.01;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1780,189,0 chrXI 496317 . A T 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=114;Dels=0.00;FS=25.709;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=-0.538;QD=17.85;ReadPosRankSum=3.721;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:5,109:114:99:2068,222,0 chrXI 496326 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.88;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1946,216,0 chrXI 496395 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-0.354;QD=16.65;ReadPosRankSum=1.693;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1498,168,0 chrXI 496396 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=17.83;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1584,171,0 chrXI 496416 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.26;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1670,180,0 chrXI 497389 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.1976;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.75;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1189,126,0 chrXI 497545 . G C 2036 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.62;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2069,234,0 chrXI 497576 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0129;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.85;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1229,138,0 chrXI 497626 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.26;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1319,144,0 chrXI 497655 . A C 1078 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.96;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1111,120,0 chrXI 497998 . T A 1113 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.87;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1146,123,0 chrXI 498051 . T A 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=1.027;QD=20.39;ReadPosRankSum=1.668;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1134,120,0 chrXI 498069 . T C 1035 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.48;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1068,120,0 chrXI 498151 . A T 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.133;QD=19.52;ReadPosRankSum=1.666;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1048,114,0 chrXI 498193 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:925,99,0 chrXI 498394 . C T 569 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=16.74;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:602,66,0 chrXI 498712 . A T 1228 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.54;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1261,135,0 chrXI 498730 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.85;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1117,120,0 chrXI 498942 . C T 2506 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.1260;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.54;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2539,270,0 chrXI 499266 . A T 2508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=116;Dels=0.00;FS=3.402;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.538;QD=21.62;ReadPosRankSum=1.613;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2541,276,0 chrXI 499300 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2651,285,0 chrXI 499456 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.7590;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.75;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2002,231,0 chrXI 499635 . T A 1767 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5988;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.99;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1800,192,0 chrXI 499999 . A G 2070 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.50;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2103,237,0 chrXI 500101 . A G 2688 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.17;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2721,303,0 chrXI 500136 . C A 2369 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.56;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2402,261,0 chrXI 500262 . C A 1940 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.82;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1973,213,0 chrXI 500383 . T C 1250 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.83;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1283,141,0 chrXI 500650 . G T 1602 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1635,180,0 chrXI 500815 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1306,144,0 chrXI 501258 . A C 927 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:960,108,0 chrXI 501319 . T C 400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.578;QD=16.67;ReadPosRankSum=1.445;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:48:433,48,0 chrXI 501329 . C T 432 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.00;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:465,51,0 chrXI 501383 . A G 891 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.73;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:924,102,0 chrXI 501970 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1644,183,0 chrXI 502040 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.01;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1383,156,0 chrXI 502310 . A G 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=10.0174;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.613;QD=20.02;ReadPosRankSum=0.896;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1214,110,0 chrXI 502603 . A G 1112 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.80;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1145,129,0 chrXI 502652 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.87;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1126,123,0 chrXI 502693 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.64;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1074,120,0 chrXI 503144 . A T 1551 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1584,171,0 chrXI 503229 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.90;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1394,153,0 chrXI 503357 . A G 1046 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.35;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1079,120,0 chrXI 503387 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.95;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1353,141,0 chrXI 503396 . G C 1260 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.69;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1293,144,0 chrXI 504002 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5031;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.93;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1854,201,0 chrXI 504230 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1902,207,0 chrXI 504362 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.35;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1437,165,0 chrXI 505031 . C T 2776 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1974;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.94;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2809,297,0 chrXI 505177 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.87;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1416,162,0 chrXI 505526 . G T 1503 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5944;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.87;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1536,168,0 chrXI 505564 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.14;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1492,165,0 chrXI 505715 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.31;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1694,180,0 chrXI 506135 . C T 2625 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.08;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2658,285,0 chrXI 506614 . A G 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.624;QD=16.23;ReadPosRankSum=1.678;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1072,120,0 chrXI 507344 . A G 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.483;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.356;QD=18.88;ReadPosRankSum=1.685;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1411,165,0 chrXI 507354 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.94;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1409,156,0 chrXI 507899 . C G 1531 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.69;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1564,171,0 chrXI 508136 . A G 4143.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=172;Dels=0.00;FS=20.896;HaplotypeScore=19.3080;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.515;QD=24.09;ReadPosRankSum=2.923;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:3,167:172:99:4143,456,0 chrXI 508472 . G A 2514 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2547,279,0 chrXI 508533 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.88;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2092,222,0 chrXI 508774 . A G 2619 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.58;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2652,300,0 chrXI 508819 . T G 2170 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2203,243,0 chrXI 509431 . G C 1533 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.47;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1566,174,0 chrXI 509442 . T G 1497 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.71;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1530,174,0 chrXI 509718 . T A 1925 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3750;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.39;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1958,207,0 chrXI 509930 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.0805;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.11;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1735,195,0 chrXI 510028 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.45;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2006,225,0 chrXI 510755 . A T 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.951;HaplotypeScore=14.8541;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.057;QD=21.19;ReadPosRankSum=1.687;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1686,183,0 chrXI 510872 . G T 1892 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.75;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1925,207,0 chrXI 511009 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.91;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2084,234,0 chrXI 511018 . A G 1994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=4.102;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.642;QD=18.29;ReadPosRankSum=1.700;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2027,228,0 chrXI 511186 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.24;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1675,186,0 chrXI 511303 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=108;Dels=0.00;FS=4.571;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.177;QD=19.70;ReadPosRankSum=1.699;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2161,246,0 chrXI 511327 . A G 2518 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.52;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2551,285,0 chrXI 511387 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.78;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2049,219,0 chrXI 511693 . T C 769 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.02;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:802,90,0 chrXI 511838 . A T 743 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=15.16;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:84:776,84,0 chrXI 511926 . T A 819 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.06;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:90:852,90,0 chrXI 512071 . C G 1102 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.96;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1135,126,0 chrXI 512425 . G C 1643 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.67;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1676,189,0 chrXI 512956 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.62;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1848,198,0 chrXI 513184 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.3528;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.75;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1258,138,0 chrXI 513438 . A T 1185 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.81;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1218,132,0 chrXI 513471 . G C 1512 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.24;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1545,171,0 chrXI 513674 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=84.5394;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.19;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2314,252,0 chrXI 513787 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.19;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2179,234,0 chrXI 514016 . T G 1628 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.10;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1661,186,0 chrXI 514029 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=19.57;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1618,180,0 chrXI 514043 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.75;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1850,201,0 chrXI 514126 . T G 2533 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.8901;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.59;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2566,288,0 chrXI 514792 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.45;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1531,171,0 chrXI 514945 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.38;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1522,171,0 chrXI 515018 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.21;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1518,162,0 chrXI 515716 . C T 2082 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=16.93;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2115,234,0 chrXI 516142 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.87;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2621,303,0 chrXI 516166 . T C 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0106;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.505;QD=20.61;ReadPosRankSum=1.085;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2259,252,0 chrXI 516223 . A G 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.466;QD=17.60;ReadPosRankSum=1.658;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1670,192,0 chrXI 516614 . G C 846 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.38;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:879,99,0 chrXI 516881 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.93;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:954,105,0 chrXI 517103 . A T 719 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=8.7973;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=23.19;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:81:752,81,0 chrXI 517130 . G T 493 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=22.41;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:57:526,57,0 chrXI 517143 . T C 391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=0.091;QD=20.58;ReadPosRankSum=1.552;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,18:19:48:424,48,0 chrXI 517179 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=20.57;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:753,84,0 chrXI 517204 . T C 1059 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=23.02;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1092,123,0 chrXI 517282 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.145;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.1241;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.617;QD=19.00;ReadPosRankSum=-0.147;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1154,129,0 chrXI 517456 . G T 50.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=10.19;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:83,9,0 chrXI 517458 . A T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=2.41;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrXI 518114 . T C 191.19 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.664;DP=43;Dels=0.00;FS=17.090;HaplotypeScore=10.8529;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;MQRankSum=2.643;QD=4.45;ReadPosRankSum=1.934;SB=-2.478e+01 GT:AD:DP:GQ:PL 1/1:10,32:43:8:223,8,0 chrXI 518139 . T C 60.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;DP=45;Dels=0.00;FS=12.041;HaplotypeScore=6.7326;MLEAC=1;MLEAF=0.500;MQ=50.55;MQ0=0;MQRankSum=-0.137;QD=1.33;ReadPosRankSum=4.847;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:22,23:45:50:90,0,50 chrXI 518221 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.09;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1911,213,0 chrXI 518236 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.38;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1679,186,0 chrXI 518633 . T A 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=89;Dels=0.00;FS=5.926;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.667;QD=19.06;ReadPosRankSum=2.920;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:1729,189,0 chrXI 519910 . G A 2592 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.64;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2625,294,0 chrXI 520153 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2393,267,0 chrXI 520210 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=140;Dels=0.00;FS=10.947;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.238;QD=18.68;ReadPosRankSum=2.892;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:3,137:140:99:2648,303,0 chrXI 520634 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=14.63;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:87:823,87,0 chrXI 520873 . T C 2455 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.38;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2488,279,0 chrXI 522077 . A G 2761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=127;Dels=0.00;FS=5.136;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.397;QD=21.74;ReadPosRankSum=1.676;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,123:127:99:2794,312,0 chrXI 522139 . G A 3465.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.57;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3465,375,0 chrXI 522153 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.6331;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.33;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2594,279,0 chrXI 522560 . C G 1450 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.33;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1483,162,0 chrXI 522677 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1642,186,0 chrXI 522994 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.32;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1632,177,0 chrXI 523140 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=15.59;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1639,180,0 chrXI 523152 . A C 1817 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=15.02;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1850,210,0 chrXI 523718 . G A 260 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=5.42;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:33:293,33,0 chrXI 523996 . A G 554 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=15.39;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:66:587,66,0 chrXI 524060 . G A 199.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=5.2694;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=9.48;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,14:21:27:232,27,0 chrXI 524191 . A G 1088 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.92;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1121,132,0 chrXI 524202 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.65;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1211,138,0 chrXI 524346 . A G 1005 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.85;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1038,117,0 chrXI 524433 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.02;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1398,150,0 chrXI 524511 . C A 1636 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.80;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1669,186,0 chrXI 525301 . A G 794 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.89;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:827,93,0 chrXI 525489 . T A 947 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.94;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:980,108,0 chrXI 525633 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.47;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1357,153,0 chrXI 525645 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.79;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1499,168,0 chrXI 525867 . G C 1486 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1519,171,0 chrXI 526209 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.19;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1319,147,0 chrXI 527133 . C T 1661 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.46;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1694,186,0 chrXI 527413 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.676;QD=20.84;ReadPosRankSum=1.690;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1742,192,0 chrXI 527438 . A G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.632;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.078;QD=20.72;ReadPosRankSum=1.694;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1898,210,0 chrXI 527498 . G C 959 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=14.98;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:992,111,0 chrXI 527511 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=76;Dels=0.04;FS=10.168;HaplotypeScore=8.4638;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.069;QD=16.05;ReadPosRankSum=2.876;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1253,138,0 chrXI 527598 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=14.85;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1325,150,0 chrXI 527599 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=15.45;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1408,150,0 chrXI 527820 . A G 2421 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=23.6173;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.34;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2454,282,0 chrXI 528174 . G A 2794 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.68;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2827,306,0 chrXI 528277 . A C 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=7.8794;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.701;QD=20.51;ReadPosRankSum=1.650;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1756,201,0 chrXI 528401 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.3799;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.57;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1298,144,0 chrXI 529435 . T G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=4.048;HaplotypeScore=8.5796;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.123;QD=18.80;ReadPosRankSum=1.705;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2440,273,0 chrXI 529548 . C G 1782 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.27;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1815,204,0 chrXI 529895 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=18.69;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2444,264,0 chrXI 529929 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=14.21;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1639,180,0 chrXI 529934 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.464;QD=13.97;ReadPosRankSum=1.701;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,111:116:99:1653,186,0 chrXI 529983 . T G 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=1.010;QD=12.93;ReadPosRankSum=1.624;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1300,150,0 chrXI 530043 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.22;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1755,186,0 chrXI 530471 . G T 1565 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.59;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1598,174,0 chrXI 530545 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=8.451;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.308;QD=18.43;ReadPosRankSum=1.697;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:1,97:100:99:1876,216,0 chrXI 531524 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.55;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1343,144,0 chrXI 531590 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.76;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1377,150,0 chrXI 531608 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.03;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1535,171,0 chrXI 531818 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1580,177,0 chrXI 531920 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.99;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2078,228,0 chrXI 532520 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.41;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1960,219,0 chrXI 532628 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.95;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2360,252,0 chrXI 533318 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=17.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1891,204,0 chrXI 533947 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.9683;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.05;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2147,240,0 chrXI 535201 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.35;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1096,123,0 chrXI 535267 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.66;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1246,132,0 chrXI 535579 . G T 1316 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1349,150,0 chrXI 535712 . T C 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.617;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.054;QD=21.04;ReadPosRankSum=1.694;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1990,219,0 chrXI 536945 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.051;QD=21.29;ReadPosRankSum=1.681;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1481,165,0 chrXI 537672 . G A 2234 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.27;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2267,243,0 chrXI 538129 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1448,156,0 chrXI 538650 . C A 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.90;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,132,0 chrXI 539120 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.14;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1830,204,0 chrXI 539491 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.33;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2025,225,0 chrXI 539613 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.0309;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.83;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1533,168,0 chrXI 539661 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.08;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1464,162,0 chrXI 539877 . A G 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.940;QD=19.36;ReadPosRankSum=1.683;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1388,153,0 chrXI 540072 . T C 1022 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.65;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1055,120,0 chrXI 540635 . C A 1330 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.80;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1363,147,0 chrXI 540645 . A G 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=60;Dels=0.00;FS=3.066;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.234;QD=19.42;ReadPosRankSum=2.322;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:2,56:60:99:1198,135,0 chrXI 540723 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.41;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1227,129,0 chrXI 540805 . T C 1458 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.14;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1491,165,0 chrXI 540875 . G C 1384 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.22;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1417,162,0 chrXI 540879 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.47;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1548,171,0 chrXI 541354 . C T 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.782;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.652;QD=20.16;ReadPosRankSum=1.088;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:96:900,96,0 chrXI 541571 . G C 1602 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1635,180,0 chrXI 541941 . G C 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.97;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,144,0 chrXI 541976 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=5.119;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.560;QD=21.42;ReadPosRankSum=1.679;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1425,156,0 chrXI 542352 . C T 871 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.80;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:904,99,0 chrXI 542583 . T C 973 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.71;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1006,114,0 chrXI 542597 . T C 972 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.05;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1005,111,0 chrXI 542924 . G C 1435 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.8815;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.10;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1468,165,0 chrXI 542955 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.43;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1491,162,0 chrXI 543193 . A G 753 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=16.37;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:786,87,0 chrXI 543203 . G A 797 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=15.94;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:90:830,90,0 chrXI 543396 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.47;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1763,192,0 chrXI 543799 . T A 971 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7026;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.34;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1004,111,0 chrXI 543951 . T C 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.152;QD=24.86;ReadPosRankSum=2.364;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1450,159,0 chrXI 544557 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.95;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1635,177,0 chrXI 545152 . G T 1313 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.64;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1346,144,0 chrXI 545405 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.45;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1485,165,0 chrXI 545416 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.42;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1373,147,0 chrXI 545424 . A G 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.472;QD=19.58;ReadPosRankSum=1.680;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1325,147,0 chrXI 545874 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.67;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1620,177,0 chrXI 545963 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.84;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1495,165,0 chrXI 546387 . C A 1401 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.01;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1434,159,0 chrXI 546403 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.88;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1487,162,0 chrXI 546444 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.82;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1369,150,0 chrXI 546501 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.31;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1706,183,0 chrXI 546559 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.07;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1950,210,0 chrXI 547133 . A G 1128 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.89;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1161,126,0 chrXI 547536 . G A 1286 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.74;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1319,141,0 chrXI 548010 . T G 2896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=2.804;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.310;QD=22.11;ReadPosRankSum=2.393;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2929,324,0 chrXI 548064 . C T 3807.01 PASS AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=8.5286;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.69;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,183:184:99:3807,429,0 chrXI 548175 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.2048;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.26;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2415,270,0 chrXI 548301 . A C 2986 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.45;SB=-1.741e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3019,336,0 chrXI 548668 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9114;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.45;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2178,231,0 chrXI 548697 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=17.44;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2004,225,0 chrXI 549094 . A T 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=93;Dels=0.00;FS=8.281;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.944;QD=19.18;ReadPosRankSum=2.395;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1817,195,0 chrXI 549098 . T A 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=1.414;QD=18.69;ReadPosRankSum=1.692;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1715,183,0 chrXI 549222 . G C 1371 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.14;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1404,156,0 chrXI 549235 . T G 1355 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.60;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1388,159,0 chrXI 549266 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.68;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1359,147,0 chrXI 549422 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.09;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2163,231,0 chrXI 549438 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=15.33;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1198,135,0 chrXI 549444 . C A 1064 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=14.38;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1097,123,0 chrXI 549464 . A C 953 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=46.3924;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=14.44;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:99:986,111,0 chrXI 549543 . G A 2515 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.87;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2548,270,0 chrXI 549575 . C T 2594 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.17;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2627,279,0 chrXI 549990 . C A 1053 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1086,117,0 chrXI 550068 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1328,150,0 chrXI 550227 . T C 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.781;QD=22.47;ReadPosRankSum=1.597;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1179,135,0 chrXI 550278 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1117,120,0 chrXI 550329 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.00;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1275,144,0 chrXI 550359 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.04;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1001,111,0 chrXI 550408 . T A 1493 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.33;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1526,162,0 chrXI 550800 . T A 861 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.88;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:894,99,0 chrXI 550812 . T C 827 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.60;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:860,99,0 chrXI 550839 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.3515;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.22;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1035,114,0 chrXI 550913 . C A 1295 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.95;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1328,141,0 chrXI 551284 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.67;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2135,234,0 chrXI 551392 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=109;Dels=0.00;FS=10.035;HaplotypeScore=7.5197;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.324;QD=19.97;ReadPosRankSum=2.917;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2210,249,0 chrXI 551512 . G T 2346 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.33;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2379,252,0 chrXI 551750 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.154;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0076;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.617;QD=21.90;ReadPosRankSum=0.962;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2004,204,0 chrXI 551893 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.15;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1677,180,0 chrXI 552591 . C A 1457 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8713;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.69;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1490,159,0 chrXI 552756 . C G 1560 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.75;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1593,180,0 chrXI 552800 . C G 1401 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.89;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1434,156,0 chrXI 552901 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.63;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1643,186,0 chrXI 552927 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.01;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1987,210,0 chrXI 552998 . A G 2017 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.77;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2050,228,0 chrXI 553078 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.45;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1675,183,0 chrXI 553084 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.63;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1602,183,0 chrXI 553141 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.799;QD=17.63;ReadPosRankSum=1.643;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1408,156,0 chrXI 553164 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.43;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1683,186,0 chrXI 553304 . T A 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=7.9827;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.320;QD=19.40;ReadPosRankSum=1.608;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1663,186,0 chrXI 553342 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.11;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2182,243,0 chrXI 553992 . T C 2544 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2577,285,0 chrXI 554158 . A G 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.815;QD=16.88;ReadPosRankSum=1.681;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1181,135,0 chrXI 554163 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.99;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1274,135,0 chrXI 554227 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.10;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1822,204,0 chrXI 554305 . C T 2362 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.8613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2395,261,0 chrXI 555214 . T C 303 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=27;QD=5.72;SB=-8.700e-03 GT:AD:DP:GQ:PL 1/1:0,52:53:36:336,36,0 chrXI 556475 . A T 483 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.615;QD=15.58;ReadPosRankSum=0.056;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:57:516,57,0 chrXI 556484 . A G 554 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.10;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:66:587,66,0 chrXI 556642 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1002,111,0 chrXI 556740 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.26;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1391,159,0 chrXI 556988 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.15;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1700,183,0 chrXI 557093 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.075;QD=21.31;ReadPosRankSum=1.613;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1269,144,0 chrXI 557299 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.57;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1023,108,0 chrXI 558496 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.968;QD=20.79;ReadPosRankSum=1.579;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1447,165,0 chrXI 558543 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.23;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1287,141,0 chrXI 558670 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.98;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1774,198,0 chrXI 558690 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.29;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1653,186,0 chrXI 559170 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=16.69;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2186,231,0 chrXI 559196 . T G 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.994;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.155;QD=17.79;ReadPosRankSum=1.703;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2185,246,0 chrXI 559244 . A C 1994 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.19;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2027,228,0 chrXI 559313 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.10;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2135,234,0 chrXI 559412 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.74;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1837,195,0 chrXI 559595 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.28;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1523,162,0 chrXI 559615 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.37;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1505,168,0 chrXI 560154 . A G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=3.310;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.000;QD=21.92;ReadPosRankSum=1.675;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1392,153,0 chrXI 560580 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.66;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2390,255,0 chrXI 560625 . C A 2346 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.22;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2379,264,0 chrXI 560783 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3688;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.52;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1309,147,0 chrXI 561038 . A G 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.933;QD=16.58;ReadPosRankSum=1.599;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:895,102,0 chrXI 561215 . A C 828 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.82;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:861,96,0 chrXI 561431 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.17;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1000,111,0 chrXI 561638 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=15.7115;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.51;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1828,201,0 chrXI 561779 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.67;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2493,273,0 chrXI 561959 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.7966;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.34;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2372,270,0 chrXI 562081 . C T 2748 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.3980;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.66;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2781,294,0 chrXI 562470 . G T 2945 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.14;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2978,321,0 chrXI 562500 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.238;QD=22.67;ReadPosRankSum=1.700;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2504,279,0 chrXI 562744 . T G 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=5.667;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.910;QD=19.12;ReadPosRankSum=1.674;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1161,132,0 chrXI 562768 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.94;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1378,150,0 chrXI 562850 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.94;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1791,195,0 chrXI 562948 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.58;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1704,180,0 chrXI 563008 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.23;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1543,165,0 chrXI 563181 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1476,156,0 chrXI 563365 . T C 1835 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.62;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1868,210,0 chrXI 563390 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.18;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1526,165,0 chrXI 563812 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.29;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1112,123,0 chrXI 564640 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.347;QD=22.46;ReadPosRankSum=1.677;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1448,162,0 chrXI 564676 . C T 2080 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.11;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2113,231,0 chrXI 564715 . T G 1979 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.99;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2012,225,0 chrXI 565014 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.69;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1416,159,0 chrXI 565509 . T C 2389 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2422,267,0 chrXI 565592 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.66;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2037,228,0 chrXI 565988 . T A 1493 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.39;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1526,165,0 chrXI 566185 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1042,111,0 chrXI 566670 . G A 1483 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.26;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1516,162,0 chrXI 567055 . G A 762 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=12.29;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:87:795,87,0 chrXI 567076 . T G 1136 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=14.95;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1169,129,0 chrXI 567597 . G C 978 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=14.82;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1011,114,0 chrXI 567598 . T G 1031 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.86;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1064,120,0 chrXI 567633 . C T 932 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=15.03;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:965,105,0 chrXI 567877 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.46;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1711,192,0 chrXI 567960 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.82;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1689,192,0 chrXI 568028 . A G 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=2.988;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.552;QD=21.03;ReadPosRankSum=2.398;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2073,237,0 chrXI 568283 . T C 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=83;Dels=0.00;FS=7.879;HaplotypeScore=14.9737;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.076;QD=17.78;ReadPosRankSum=2.359;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1509,171,0 chrXI 568316 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.19;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1516,168,0 chrXI 568472 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8815;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.54;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1967,213,0 chrXI 568502 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.02;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1904,216,0 chrXI 568658 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9697;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.59;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1684,186,0 chrXI 569033 . A G 1151 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.18;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1184,129,0 chrXI 569085 . T C 743 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=14.57;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:776,87,0 chrXI 569114 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=16.52;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:958,111,0 chrXI 569245 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1448,156,0 chrXI 569468 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.33;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1057,114,0 chrXI 569825 . T G 1531 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=21.26;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1564,183,0 chrXI 570035 . A G 855 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.81;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:888,99,0 chrXI 570049 . G A 844 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=15.92;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:877,93,0 chrXI 570052 . G C 864 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.71;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:897,99,0 chrXI 570460 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.45;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1511,162,0 chrXI 570469 . A T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=0.666;QD=17.83;ReadPosRankSum=1.688;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1424,140,0 chrXI 570508 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=19.19;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1741,192,0 chrXI 570688 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.32;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2120,237,0 chrXI 570835 . A G 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.206;QD=19.40;ReadPosRankSum=1.644;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1585,177,0 chrXI 571008 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.24;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1668,186,0 chrXI 571051 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=17.39;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1581,174,0 chrXI 571065 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6125;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.08;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1587,177,0 chrXI 571067 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.55;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1683,183,0 chrXI 571283 . A T 760 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.67;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:793,84,0 chrXI 571384 . A T 868 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.67;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:901,96,0 chrXI 571557 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1578,171,0 chrXI 572337 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.02;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1250,144,0 chrXI 572586 . A G 1293 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.47;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1326,147,0 chrXI 572589 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.82;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1369,147,0 chrXI 572739 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1672,183,0 chrXI 572874 . C G 1810 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.51;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1843,201,0 chrXI 573116 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.95;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1084,114,0 chrXI 573150 . C T 823 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.70;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:856,90,0 chrXI 573386 . T A 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=69;Dels=0.00;FS=26.508;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.248;QD=16.36;ReadPosRankSum=3.193;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:4,65:69:99:1162,126,0 chrXI 573397 . G A 632 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=8.32;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:75:665,75,0 chrXI 574638 . T C 2722 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.78;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2755,312,0 chrXI 574788 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.39;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1379,156,0 chrXI 575132 . A G 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=2.827;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.928;QD=18.36;ReadPosRankSum=2.267;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1520,168,0 chrXI 575153 . A T 2062 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.91;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2095,225,0 chrXI 575413 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.51;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:926,102,0 chrXI 575606 . T G 1391 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0438;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.05;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1424,162,0 chrXI 575717 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.53;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1470,162,0 chrXI 575843 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.52;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:842,96,0 chrXI 575852 . A G 732 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.61;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:765,87,0 chrXI 576400 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.3378;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.78;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1864,204,0 chrXI 576947 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.14;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1597,180,0 chrXI 577326 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.22;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1705,189,0 chrXI 577440 . A G 1075 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=18.86;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1108,126,0 chrXI 577461 . T A 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=4.191;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.677;QD=19.48;ReadPosRankSum=1.622;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1280,141,0 chrXI 577769 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.48;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1533,168,0 chrXI 577779 . G T 1455 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.65;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1488,162,0 chrXI 578482 . A G 2466 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.73;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2499,294,0 chrXI 578824 . T C 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=5.554;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.446;QD=19.36;ReadPosRankSum=1.554;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1930,216,0 chrXI 578904 . G C 1427 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7366;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.10;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1460,162,0 chrXI 578942 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.43;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:90:820,90,0 chrXI 579093 . T C 1022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=5.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.659;QD=21.74;ReadPosRankSum=1.659;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1055,117,0 chrXI 579153 . A G 1078 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.73;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1111,123,0 chrXI 579169 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.87;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1106,126,0 chrXI 579541 . T C 522 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.91;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:66:555,66,0 chrXI 579577 . A G 574 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=13.67;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:69:607,69,0 chrXI 579792 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=24.40;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1546,174,0 chrXI 580030 . T C 474 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.93;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:507,57,0 chrXI 580243 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.358;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.590;QD=20.54;ReadPosRankSum=-0.476;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1902,216,0 chrXI 580341 . T C 1820 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.20;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1853,207,0 chrXI 580463 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.70;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2082,234,0 chrXI 580625 . T C 864 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.90;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:897,99,0 chrXI 580782 . G T 1009 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.10;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1042,120,0 chrXI 580811 . T C 1492 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.89;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1525,171,0 chrXI 580815 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.232;QD=18.59;ReadPosRankSum=3.346;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1539,168,0 chrXI 580836 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.41;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1411,150,0 chrXI 581030 . A T 304 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:36:337,36,0 chrXI 581058 . A G 249 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:33:282,33,0 chrXI 581163 . T C 470 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.80;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:503,57,0 chrXI 581198 . A C 430 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.48;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:51:463,51,0 chrXI 581200 . G A 379 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.23;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,20:22:45:412,45,0 chrXI 581429 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.13;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1553,165,0 chrXI 581744 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1611,180,0 chrXI 581803 . T G 1258 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.06;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1291,147,0 chrXI 581827 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.92;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1133,126,0 chrXI 581871 . T C 875 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6537;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=13.89;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:908,102,0 chrXI 581872 . T A 914 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6537;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.51;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:947,102,0 chrXI 581924 . C A 811 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=12.10;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:90:844,90,0 chrXI 581940 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=13.68;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:93:840,93,0 chrXI 581974 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.12;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1180,132,0 chrXI 582207 . A G 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.914;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.062;QD=21.45;ReadPosRankSum=1.695;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2028,225,0 chrXI 582300 . G C 1755 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.94;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1788,198,0 chrXI 582756 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.67;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2391,255,0 chrXI 582912 . C T 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.204;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.615;QD=19.46;ReadPosRankSum=1.615;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1220,129,0 chrXI 582939 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=16.87;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1062,120,0 chrXI 583125 . T C 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=3.559;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.145;QD=18.08;ReadPosRankSum=1.674;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1100,123,0 chrXI 583147 . A C 1246 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.60;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1279,147,0 chrXI 583405 . A T 1120 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.50;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1153,126,0 chrXI 583618 . A C 1383 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=68.5208;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.44;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1416,165,0 chrXI 583793 . G T 1188 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.48;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1221,132,0 chrXI 584258 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.75;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1527,168,0 chrXI 584345 . T C 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=5.1800;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.646;QD=20.29;ReadPosRankSum=1.689;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1656,186,0 chrXI 584438 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1126,126,0 chrXI 584726 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.72;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1717,189,0 chrXI 584769 . A T 1704 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.78;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1737,189,0 chrXI 584906 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.29;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1782,189,0 chrXI 584944 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.26;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1126,120,0 chrXI 585020 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.68;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1079,117,0 chrXI 585032 . C T 1013 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.09;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1046,114,0 chrXI 585038 . C A 982 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9840;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=17.85;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1015,111,0 chrXI 585134 . G T 1349 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.13;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1382,153,0 chrXI 585254 . T C 2299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.649;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.820;QD=24.20;ReadPosRankSum=1.696;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2332,258,0 chrXI 585338 . T C 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=63;Dels=0.00;FS=2.719;HaplotypeScore=8.9733;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.936;QD=20.67;ReadPosRankSum=2.371;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,60:63:99:1335,150,0 chrXI 585479 . A G 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=8.274;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=0.559;QD=23.31;ReadPosRankSum=2.334;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1525,177,0 chrXI 585500 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.54;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1563,165,0 chrXI 585687 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.32;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1653,177,0 chrXI 585764 . T C 1353 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.82;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1386,153,0 chrXI 585824 . T C 1628 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.38;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1661,189,0 chrXI 585831 . T C 1613 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=20.16;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1646,180,0 chrXI 585833 . A G 1558 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=20.23;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1591,177,0 chrXI 585840 . G A 1409 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=19.04;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1442,156,0 chrXI 585929 . C A 2028 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.73;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2061,219,0 chrXI 585995 . T C 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.000;QD=19.94;ReadPosRankSum=1.594;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1030,114,0 chrXI 586172 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.93;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1327,144,0 chrXI 586366 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.22;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1476,168,0 chrXI 586587 . A G 1185 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1218,138,0 chrXI 586747 . C T 3838.01 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-2.111e+03 GT:AD:DP:GQ:PL 1/1:0,174:174:99:3838,420,0 chrXI 587935 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9892;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.55;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1910,213,0 chrXI 588209 . G T 1743 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.75;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1776,195,0 chrXI 588241 . C G 1528 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.37;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,177,0 chrXI 588580 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.15;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2624,285,0 chrXI 588593 . A G 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=4.221;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.765;QD=21.55;ReadPosRankSum=1.701;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2425,270,0 chrXI 588787 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9910;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.41;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2110,231,0 chrXI 588805 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.16;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1930,216,0 chrXI 588890 . C T 1851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=5.272;HaplotypeScore=6.7127;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.526;QD=18.15;ReadPosRankSum=0.875;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1884,207,0 chrXI 588930 . T C 2154 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.41;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2187,240,0 chrXI 589078 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.63;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1839,213,0 chrXI 589534 . G C 2351 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.2961;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.28;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2384,267,0 chrXI 589580 . G T 1556 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=62.7891;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.75;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1589,174,0 chrXI 589750 . T A 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.441;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.792;QD=21.27;ReadPosRankSum=1.633;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1522,162,0 chrXI 589814 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.87;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1606,171,0 chrXI 589828 . T C 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=5.263;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.577;QD=15.77;ReadPosRankSum=1.691;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1358,153,0 chrXI 589939 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.30;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1332,153,0 chrXI 590023 . C T 778 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.09;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:811,87,0 chrXI 590322 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.27;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1748,192,0 chrXI 590419 . T A 1697 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1730,195,0 chrXI 591638 . A T 1920 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.11;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1953,210,0 chrXI 591644 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.48;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1829,201,0 chrXI 591912 . T C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=96;Dels=0.00;FS=3.488;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.036;QD=17.39;ReadPosRankSum=1.696;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1702,192,0 chrXI 591920 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.56;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1807,201,0 chrXI 592478 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.12;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1371,153,0 chrXI 592577 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.23;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1856,207,0 chrXI 594186 . T G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.596;QD=21.38;ReadPosRankSum=-0.028;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1337,150,0 chrXI 594718 . A G 746 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.61;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:779,87,0 chrXI 594744 . C T 788 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.74;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:821,90,0 chrXI 594957 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.00;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1013,108,0 chrXI 594987 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.13;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1175,132,0 chrXI 595260 . T G 894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.762;QD=17.88;ReadPosRankSum=1.525;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:927,108,0 chrXI 595278 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.10;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1116,126,0 chrXI 595509 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1465,159,0 chrXI 596708 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.71;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1268,141,0 chrXI 596823 . A G 1385 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.47;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1418,156,0 chrXI 596871 . A G 1398 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.42;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1431,159,0 chrXI 596996 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.67;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1687,180,0 chrXI 597106 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=71;Dels=0.00;FS=2.472;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.459;QD=18.59;ReadPosRankSum=3.279;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1353,153,0 chrXI 597150 . A G 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.56;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,144,0 chrXI 597399 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=95;Dels=0.00;FS=2.996;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.490;QD=17.43;ReadPosRankSum=2.370;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,91:95:99:1689,186,0 chrXI 597866 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.74;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1837,204,0 chrXI 598795 . A T 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=105;Dels=0.00;FS=12.130;HaplotypeScore=15.5380;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.702;QD=18.96;ReadPosRankSum=2.895;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2024,213,0 chrXI 598922 . C G 1172 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=15.22;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1205,135,0 chrXI 599004 . A G 2476 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.13;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2509,279,0 chrXI 599337 . T C 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=2.936;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.734;QD=20.72;ReadPosRankSum=2.394;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1898,210,0 chrXI 599407 . G A 2423 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.03;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2456,261,0 chrXI 599535 . A G 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.472;QD=17.96;ReadPosRankSum=1.689;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1470,168,0 chrXI 599592 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.38;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1700,183,0 chrXI 599979 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=83;Dels=0.00;FS=3.064;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.293;QD=17.80;ReadPosRankSum=2.359;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:2,79:83:99:1510,168,0 chrXI 600024 . T C 1364 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.36;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1397,156,0 chrXI 600033 . A G 1318 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.56;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1351,156,0 chrXI 600075 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.10;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1155,132,0 chrXI 600099 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.61;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1075,114,0 chrXI 600144 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=17.92;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1413,150,0 chrXI 600159 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.583;QD=16.72;ReadPosRankSum=2.383;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1270,144,0 chrXI 600363 . G A 1604 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.80;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1637,174,0 chrXI 600406 . T G 1974 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.23;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2007,225,0 chrXI 600456 . T A 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=2.977;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.834;QD=21.93;ReadPosRankSum=2.404;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2401,258,0 chrXI 601065 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.33;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1517,174,0 chrXI 601089 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.253;QD=17.74;ReadPosRankSum=1.538;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1612,183,0 chrXI 601177 . T G 2271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=114;Dels=0.00;FS=7.280;HaplotypeScore=12.1439;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.604;QD=19.92;ReadPosRankSum=2.404;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:2,106:114:99:2304,255,0 chrXI 601260 . G C 1995 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.76;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2028,225,0 chrXI 602166 . T G 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.277;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.313;QD=21.61;ReadPosRankSum=1.690;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1848,204,0 chrXI 602763 . T C 2314 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2347,267,0 chrXI 602859 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1571,183,0 chrXI 603048 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.97;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1962,219,0 chrXI 604059 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2497,276,0 chrXI 604186 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1382,150,0 chrXI 604356 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8436;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.43;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1850,207,0 chrXI 605622 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.34;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2367,252,0 chrXI 606158 . T C 1460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=72;Dels=0.00;FS=2.906;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.319;QD=20.28;ReadPosRankSum=2.347;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1493,168,0 chrXI 606185 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.13;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1618,177,0 chrXI 606671 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1413,159,0 chrXI 607802 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.08;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1348,150,0 chrXI 608028 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1681,186,0 chrXI 608132 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.96;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1417,156,0 chrXI 608429 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.77;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1417,156,0 chrXI 608546 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.86;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1026,111,0 chrXI 608829 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.82;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1294,147,0 chrXI 608840 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.05;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1296,138,0 chrXI 609738 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.542;QD=22.56;ReadPosRankSum=1.557;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2266,252,0 chrXI 610232 . A T 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,186,0 chrXI 611187 . C G 1584 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.64;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1617,177,0 chrXI 611219 . T C 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=2.793;HaplotypeScore=6.5754;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.060;QD=20.23;ReadPosRankSum=2.371;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1287,141,0 chrXI 612138 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.22;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:974,105,0 chrXI 612508 . A G 836 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:869,96,0 chrXI 612630 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.98;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1748,192,0 chrXI 613583 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.65;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1925,204,0 chrXI 613646 . A T 174.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005;DP=54;Dels=0.00;FS=15.182;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.04;MQ0=0;MQRankSum=-0.434;QD=3.22;ReadPosRankSum=-4.105;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:40,14:54:40:204,0,40 chrXI 613658 . G A 595 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=12.93;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:66:628,66,0 chrXI 613676 . G A 615 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=12.55;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:648,72,0 chrXI 613694 . G A 620 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.8679;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.88;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:72:653,72,0 chrXI 613698 . C T 440 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;DP=50;Dels=0.00;FS=1.347;HaplotypeScore=10.8344;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=1.850;QD=8.80;ReadPosRankSum=3.841;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:11,39:50:51:473,51,0 chrXI 613699 . T C 408 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DP=50;Dels=0.00;FS=1.347;HaplotypeScore=10.8344;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=-0.937;QD=8.16;ReadPosRankSum=4.169;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:11,39:50:51:441,51,0 chrXI 613700 . G A 400 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.456;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=10.8344;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=1.055;QD=8.00;ReadPosRankSum=4.693;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:10,40:50:48:433,48,0 chrXI 613707 . C T 446 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.816;DP=64;Dels=0.00;FS=2.407;HaplotypeScore=20.7289;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-1.575;QD=6.97;ReadPosRankSum=4.950;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:18,46:64:51:479,51,0 chrXI 613708 . T C 411 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DP=64;Dels=0.00;FS=2.407;HaplotypeScore=19.7624;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-0.829;QD=6.42;ReadPosRankSum=5.114;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:18,46:64:51:444,51,0 chrXI 613709 . G A 433 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.054;DP=64;Dels=0.00;FS=2.407;HaplotypeScore=18.7890;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=0;MQRankSum=-0.948;QD=6.77;ReadPosRankSum=5.174;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:18,46:64:51:466,51,0 chrXI 613772 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5492;MLEAC=1;MLEAF=0.500;MQ=50.62;MQ0=0;MQRankSum=2.161;QD=0.16;ReadPosRankSum=-3.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,10:83:43:43,0,293 chrXI 613775 . G A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.656;DP=79;Dels=0.00;FS=1.710;HaplotypeScore=3.7738;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=0;MQRankSum=1.507;QD=0.48;ReadPosRankSum=-3.201;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,11:79:68:68,0,240 chrXI 614248 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.08;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1298,150,0 chrXI 614464 . A C 1873 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.12;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1906,213,0 chrXI 614538 . T A 1406 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1439,165,0 chrXI 615175 . A G 1657 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6952;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.80;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1690,189,0 chrXI 615234 . A G 2397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=106;Dels=0.00;FS=4.690;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.915;QD=22.61;ReadPosRankSum=1.699;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2430,279,0 chrXI 615914 . G C 1423 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.33;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1456,159,0 chrXI 616170 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1102,126,0 chrXI 616404 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,195,0 chrXI 616917 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.90;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1526,168,0 chrXI 617028 . T C 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.359;QD=21.94;ReadPosRankSum=1.679;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1459,168,0 chrXI 617543 . A T 802 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.56;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:835,90,0 chrXI 617954 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.58;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1320,144,0 chrXI 619007 . A G 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.192;QD=22.31;ReadPosRankSum=1.687;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1751,198,0 chrXI 619045 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.24;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1915,213,0 chrXI 619163 . G C 2063 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.84;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2096,234,0 chrXI 619260 . A T 1293 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.21;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1326,141,0 chrXI 619266 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.03;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1191,132,0 chrXI 619475 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.14;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2924,318,0 chrXI 619671 . G T 2098 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.37;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2131,240,0 chrXI 619794 . G A 2261 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.74;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2294,252,0 chrXI 619879 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.57;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1514,165,0 chrXI 620047 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.76;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2109,228,0 chrXI 620137 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.40;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1174,135,0 chrXI 620195 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.20;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1232,135,0 chrXI 620200 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.17;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1155,123,0 chrXI 620683 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.81;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2152,240,0 chrXI 620956 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.57;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1473,171,0 chrXI 620968 . C A 1608 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.30;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1641,180,0 chrXI 621343 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.48;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1651,180,0 chrXI 621443 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.95;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1997,216,0 chrXI 621589 . T A 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=2.660;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.320;QD=23.88;ReadPosRankSum=2.298;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1967,210,0 chrXI 621619 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=80;Dels=0.00;FS=8.322;HaplotypeScore=6.5010;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.539;QD=22.77;ReadPosRankSum=2.388;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1855,204,0 chrXI 621781 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.27;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1607,183,0 chrXI 621823 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.83;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1517,168,0 chrXI 622127 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1717,186,0 chrXI 622254 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.40;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1668,180,0 chrXI 622408 . C G 2063 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.05;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2096,231,0 chrXI 622444 . A T 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.120;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.736;QD=20.32;ReadPosRankSum=1.689;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1679,186,0 chrXI 622597 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.84;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1256,135,0 chrXI 622631 . A G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.006;QD=21.24;ReadPosRankSum=1.676;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1350,150,0 chrXI 623443 . A G 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.165;QD=18.74;ReadPosRankSum=1.691;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1607,180,0 chrXI 623494 . G T 1732 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1765,189,0 chrXI 623581 . A T 1309 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1342,147,0 chrXI 623815 . A G 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.65;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1507,168,0 chrXI 624667 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.844;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.467;QD=21.32;ReadPosRankSum=1.677;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1376,150,0 chrXI 624901 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.4303;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.06;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1655,177,0 chrXI 624953 . C T 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.472;QD=19.94;ReadPosRankSum=0.787;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2047,216,0 chrXI 625000 . A T 1595 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1628,177,0 chrXI 625172 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.25;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2150,246,0 chrXI 625174 . T A 2153 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.75;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2186,234,0 chrXI 625198 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.07;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1822,204,0 chrXI 625303 . T C 1405 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.49;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1438,165,0 chrXI 625470 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.14;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1966,213,0 chrXI 625575 . G T 1714 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.63;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1747,192,0 chrXI 625742 . A T 1414 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.49;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1447,159,0 chrXI 625773 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.33;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1720,195,0 chrXI 626381 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.64;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1478,162,0 chrXI 626414 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.28;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1189,132,0 chrXI 626539 . A T 1013 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=21.55;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1046,117,0 chrXI 626550 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.46;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1056,117,0 chrXI 627445 . A G 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=87;Dels=0.00;FS=2.810;HaplotypeScore=10.3904;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.317;QD=17.41;ReadPosRankSum=2.393;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1548,174,0 chrXI 627536 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=14.46;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1638,180,0 chrXI 627587 . A T 1787 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=20.78;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1820,195,0 chrXI 628616 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1734,183,0 chrXI 628658 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.28;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1757,189,0 chrXI 628760 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.20;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1089,126,0 chrXI 628847 . T C 2024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.603;HaplotypeScore=4.6700;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.327;QD=21.31;ReadPosRankSum=1.695;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2057,225,0 chrXI 628874 . T C 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=108;Dels=0.00;FS=9.280;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.496;QD=20.93;ReadPosRankSum=3.376;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:4,104:108:99:2293,258,0 chrXI 628913 . T A 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.806;QD=22.48;ReadPosRankSum=1.698;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2326,246,0 chrXI 628967 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1804,198,0 chrXI 629063 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=3.468;HaplotypeScore=7.6982;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.779;QD=20.23;ReadPosRankSum=1.689;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1692,195,0 chrXI 629129 . C A 1604 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.59;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1637,177,0 chrXI 629159 . A G 1304 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.73;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1337,150,0 chrXI 629560 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.34;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1804,195,0 chrXI 629639 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.36;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1330,150,0 chrXI 629786 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.31;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1800,201,0 chrXI 629864 . T C 1695 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1728,198,0 chrXI 631526 . A T 2226 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.68;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2259,243,0 chrXI 631559 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2056,222,0 chrXI 632039 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.74;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1898,207,0 chrXI 632117 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.92;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1699,195,0 chrXI 632654 . T C 1888 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.6266;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.67;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1921,216,0 chrXI 632700 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.5593;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.60;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1726,186,0 chrXI 632775 . T C 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.407;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.7366;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.678;QD=14.87;ReadPosRankSum=1.678;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:985,111,0 chrXI 632869 . A G 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=6.086;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.635;QD=12.32;ReadPosRankSum=2.377;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:871,102,0 chrXI 633272 . A G 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.979;QD=18.55;ReadPosRankSum=1.682;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1313,150,0 chrXI 633545 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.20;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:925,102,0 chrXI 633599 . A T 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=4.548;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.942;QD=22.29;ReadPosRankSum=1.550;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1348,147,0 chrXI 633641 . T A 1631 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.71;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1664,177,0 chrXI 633794 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.21;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1432,156,0 chrXI 633878 . T C 1768 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1801,201,0 chrXI 634306 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1923,213,0 chrXI 634414 . A G 1318 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.97;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1351,150,0 chrXI 634418 . G A 1252 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.56;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,138,0 chrXI 634424 . A G 1357 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.96;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1390,156,0 chrXI 635671 . G A 563 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:63:596,63,0 chrXI 636954 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.93;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1489,171,0 chrXI 637026 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.00;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1610,180,0 chrXI 637578 . A G 2137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.020;QD=19.79;ReadPosRankSum=1.700;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2170,246,0 chrXI 637800 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.09;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2021,225,0 chrXI 637992 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.3972;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.77;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3016,327,0 chrXI 641015 . G A 647 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.03;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:680,75,0 chrXI 641421 . T C 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.075;QD=20.43;ReadPosRankSum=1.613;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1218,138,0 chrXI 641652 . G C 637 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.74;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:75:670,75,0 chrXI 641793 . C A 1511 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.59;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1544,165,0 chrXI 641940 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:899,96,0 chrXI 642200 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.12;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1448,159,0 chrXI 642498 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.25;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2137,231,0 chrXI 642512 . G C 2011 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.10;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2044,225,0 chrXI 642656 . C T 2209 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=23.01;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2242,237,0 chrXI 642684 . T C 2025 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=18.75;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,104:108:99:2058,228,0 chrXI 642703 . T A 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=111;Dels=0.00;FS=14.199;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-1.755;QD=19.49;ReadPosRankSum=2.900;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2196,237,0 chrXI 642707 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=17.34;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1923,210,0 chrXI 642801 . G C 1521 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=21.42;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1554,171,0 chrXI 642807 . T A 1433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=5.441;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=0.693;QD=20.47;ReadPosRankSum=1.633;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1466,156,0 chrXI 642992 . T C 1900 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=25.00;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1933,213,0 chrXI 643139 . T A 996 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.33;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1029,111,0 chrXI 643217 . A T 1384 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.97;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1417,156,0 chrXI 643255 . A G 1084 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.42;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1117,123,0 chrXI 643262 . T C 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.534;QD=16.74;ReadPosRankSum=1.683;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1205,135,0 chrXI 643448 . T A 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.559;QD=18.73;ReadPosRankSum=1.617;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1157,129,0 chrXI 643509 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.00;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1131,123,0 chrXI 643569 . T A 1720 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.72;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1753,186,0 chrXI 643639 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=24.52;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1504,162,0 chrXI 643729 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.15;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1067,120,0 chrXI 643816 . T A 1064 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.00;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1097,117,0 chrXI 643990 . T G 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=4.543;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.000;QD=19.07;ReadPosRankSum=1.685;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1482,162,0 chrXI 644027 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.04;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1600,171,0 chrXI 644080 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=5.051;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.299;QD=24.05;ReadPosRankSum=1.689;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1957,216,0 chrXI 644390 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.99;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1565,174,0 chrXI 644553 . T A 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.649;QD=22.96;ReadPosRankSum=1.690;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1962,207,0 chrXI 644655 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.4991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.82;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1042,117,0 chrXI 645008 . A G 989 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.60;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1022,114,0 chrXI 645141 . A T 1710 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.52;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1743,186,0 chrXI 645733 . T C 707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.638;QD=18.61;ReadPosRankSum=1.641;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:84:740,84,0 chrXI 645980 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.89;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1306,147,0 chrXI 646140 . G C 1267 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.44;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1300,147,0 chrXI 646488 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.96;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1500,162,0 chrXI 647339 . T C 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.855;DP=269;Dels=0.00;FS=52.686;HaplotypeScore=51.3865;MLEAC=1;MLEAF=0.500;MQ=42.45;MQ0=1;MQRankSum=-6.289;QD=0.27;ReadPosRankSum=-3.541;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:168,97:269:99:103,0,2423 chrXI 647372 . A G 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.898;DP=320;Dels=0.00;FS=5.507;HaplotypeScore=104.7843;MLEAC=1;MLEAF=0.500;MQ=40.39;MQ0=2;MQRankSum=-2.287;QD=0.29;ReadPosRankSum=4.607;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:268,52:320:99:124,0,3642 chrXI 647375 . G A 1026.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=319;Dels=0.00;FS=37.477;HaplotypeScore=174.2047;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=3;MQRankSum=1.572;QD=3.22;ReadPosRankSum=-2.888;SB=-3.300e+02 GT:AD:DP:GQ:PL 0/1:233,86:319:99:1056,0,2732 chrXI 647384 . G A 1932.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=9.969;DP=334;Dels=0.00;FS=12.284;HaplotypeScore=105.8787;MLEAC=1;MLEAF=0.500;MQ=40.61;MQ0=3;MQRankSum=-2.534;QD=5.78;ReadPosRankSum=6.869;SB=-1.180e+03 GT:AD:DP:GQ:PL 0/1:168,164:334:99:1962,0,1992 chrXI 647387 . C A 1742.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.748;DP=342;Dels=0.00;FS=15.045;HaplotypeScore=41.6263;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=3;MQRankSum=-0.855;QD=5.09;ReadPosRankSum=7.275;SB=-1.040e+03 GT:AD:DP:GQ:PL 0/1:171,148:342:99:1772,0,2011 chrXI 647398 . G T 814.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.074;DP=365;Dels=0.00;FS=29.486;HaplotypeScore=63.6335;MLEAC=1;MLEAF=0.500;MQ=39.84;MQ0=6;MQRankSum=0.706;QD=2.23;ReadPosRankSum=-2.062;SB=-1.850e+02 GT:AD:DP:GQ:PL 0/1:288,77:365:99:844,0,3639 chrXI 647402 . C A 1192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.795;DP=366;Dels=0.00;FS=8.534;HaplotypeScore=65.1927;MLEAC=1;MLEAF=0.500;MQ=40.10;MQ0=6;MQRankSum=-2.834;QD=3.26;ReadPosRankSum=-0.445;SB=-5.600e+02 GT:AD:DP:GQ:PL 0/1:248,118:366:99:1222,0,3325 chrXI 647431 . C G 3405.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;DP=348;Dels=0.00;FS=0.000;HaplotypeScore=121.2209;MLEAC=1;MLEAF=0.500;MQ=40.31;MQ0=9;MQRankSum=4.351;QD=9.78;ReadPosRankSum=0.465;SB=-2.069e+03 GT:AD:DP:GQ:PL 0/1:88,256:348:99:3405,0,482 chrXI 647471 . G A 398.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.955;DP=387;Dels=0.00;FS=0.000;HaplotypeScore=110.3782;MLEAC=1;MLEAF=0.500;MQ=39.57;MQ0=9;MQRankSum=3.226;QD=1.03;ReadPosRankSum=2.907;SB=-3.030e+02 GT:AD:DP:GQ:PL 0/1:289,98:387:99:428,0,3617 chrXI 647561 . A G,T 260.65 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.318;DP=109;Dels=0.00;FS=1.340;HaplotypeScore=1.7900;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.28;MQ0=39;MQRankSum=2.788;QD=2.39;ReadPosRankSum=-0.490;SB=12.35 GT:AD:DP:GQ:PL 1/2:45,38,26:109:31:319,42,31,255,0,271 chrXI 647576 . T A 656.17 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.602;DP=144;Dels=0.00;FS=21.922;HaplotypeScore=23.6355;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=30;MQRankSum=3.048;QD=4.56;ReadPosRankSum=-1.433;SB=-4.004e+01 GT:AD:DP:GQ:PL 1/1:45,91:144:17:689,17,0 chrXI 647609 . T C 268.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DP=159;Dels=0.00;FS=14.756;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.01;MQ0=13;MQRankSum=-2.593;QD=1.69;ReadPosRankSum=-1.803;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,70:159:99:298,0,645 chrXI 647639 . T C 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;DP=131;Dels=0.00;FS=36.783;HaplotypeScore=27.4872;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=5;MQRankSum=1.132;QD=0.63;ReadPosRankSum=1.761;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:107,23:131:99:113,0,633 chrXI 647654 . G A 444.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;DP=104;Dels=0.00;FS=31.963;HaplotypeScore=37.5148;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=3;MQRankSum=-2.638;QD=4.27;ReadPosRankSum=-0.882;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:20,84:104:99:474,0,124 chrXI 647657 . C A 289.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;DP=104;Dels=0.00;FS=23.834;HaplotypeScore=72.6394;MLEAC=1;MLEAF=0.500;MQ=25.83;MQ0=2;MQRankSum=-1.561;QD=2.78;ReadPosRankSum=-1.423;SB=-9.201e+01 GT:AD:DP:GQ:PL 0/1:18,62:104:99:319,0,112 chrXI 647750 . A T 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=1;MLEAF=0.500;MQ=28.67;MQ0=46;MQRankSum=-0.797;QD=1.32;ReadPosRankSum=1.757;SB=-1.790e+02 GT:AD:DP:GQ:PL 0/1:117,49:167:99:251,0,875 chrXI 647780 . C A 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.206;DP=156;Dels=0.00;FS=40.843;HaplotypeScore=1.2434;MLEAC=1;MLEAF=0.500;MQ=31.55;MQ0=33;MQRankSum=2.761;QD=3.28;ReadPosRankSum=-0.488;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:96,60:156:99:542,0,704 chrXI 647798 . T C 1566 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.347;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=49.0597;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=28;MQRankSum=0.116;QD=8.51;ReadPosRankSum=8.150;SB=-9.418e+02 GT:AD:DP:GQ:PL 1/1:28,155:184:99:1599,148,0 chrXI 647806 . C T 742.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.366;DP=201;Dels=0.00;FS=43.848;HaplotypeScore=68.2524;MLEAC=1;MLEAF=0.500;MQ=29.98;MQ0=23;MQRankSum=0.730;QD=3.69;ReadPosRankSum=0.126;SB=-6.610e+02 GT:AD:DP:GQ:PL 0/1:102,98:201:99:772,0,589 chrXI 647810 . G A 665.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.745;DP=213;Dels=0.00;FS=32.353;HaplotypeScore=43.7156;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=20;MQRankSum=1.831;QD=3.12;ReadPosRankSum=0.040;SB=-8.000e+02 GT:AD:DP:GQ:PL 0/1:104,109:213:99:695,0,556 chrXI 647812 . C T 363.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.442;DP=214;Dels=0.00;FS=59.690;HaplotypeScore=43.7156;MLEAC=1;MLEAF=0.500;MQ=29.78;MQ0=20;MQRankSum=-2.453;QD=1.70;ReadPosRankSum=-0.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:131,82:214:99:393,0,786 chrXI 647831 . A T 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;DP=202;Dels=0.00;FS=33.846;HaplotypeScore=55.0024;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=20;MQRankSum=-1.322;QD=0.34;ReadPosRankSum=4.091;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:60,71:202:99:99,0,528 chrXI 647843 . G A 205.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;DP=180;Dels=0.00;FS=39.573;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.69;MQ0=17;MQRankSum=-1.911;QD=1.14;ReadPosRankSum=7.648;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:36,144:180:99:235,0,286 chrXI 647846 . C T 230.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.929;DP=176;Dels=0.00;FS=42.090;HaplotypeScore=8.8314;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=17;MQRankSum=-2.080;QD=1.31;ReadPosRankSum=7.048;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:31,145:176:99:260,0,221 chrXI 647855 . C T 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DP=166;Dels=0.00;FS=35.578;HaplotypeScore=10.4851;MLEAC=1;MLEAF=0.500;MQ=21.47;MQ0=12;MQRankSum=2.290;QD=0.78;ReadPosRankSum=-6.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:145,19:166:99:159,0,210 chrXI 647939 . A G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.537;DP=128;Dels=0.00;FS=5.731;HaplotypeScore=15.5490;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=18;MQRankSum=-3.009;QD=0.17;ReadPosRankSum=-3.941;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:79,35:128:52:52,0,641 chrXI 647951 . A G 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059;DP=133;Dels=0.00;FS=17.727;HaplotypeScore=36.0451;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=25;MQRankSum=3.609;QD=1.42;ReadPosRankSum=3.046;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:95,37:133:99:219,0,555 chrXI 647954 . C A 296.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.474;DP=128;Dels=0.00;FS=20.646;HaplotypeScore=36.9118;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=25;MQRankSum=-3.873;QD=2.31;ReadPosRankSum=-0.518;SB=-8.301e+01 GT:AD:DP:GQ:PL 0/1:53,53:128:99:326,0,314 chrXI 647969 . C A 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;DP=123;Dels=0.00;FS=3.993;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=26;MQRankSum=5.200;QD=2.63;ReadPosRankSum=-2.942;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:70,53:123:99:353,0,423 chrXI 647995 . C T 257.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.736;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=20.1439;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=29;MQRankSum=4.239;QD=2.16;ReadPosRankSum=-4.156;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:81,37:119:99:287,0,425 chrXI 647998 . G C 210.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DP=108;Dels=0.00;FS=3.362;HaplotypeScore=13.9205;MLEAC=1;MLEAF=0.500;MQ=19.88;MQ0=28;MQRankSum=4.228;QD=1.94;ReadPosRankSum=-3.675;SB=-2.050e+02 GT:AD:DP:GQ:PL 0/1:62,44:108:99:240,0,343 chrXI 647999 . G A 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=105;Dels=0.00;FS=4.784;HaplotypeScore=13.9205;MLEAC=1;MLEAF=0.500;MQ=18.60;MQ0=28;MQRankSum=4.108;QD=1.88;ReadPosRankSum=-2.986;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:77,28:105:99:227,0,353 chrXI 648020 . A G 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;DP=105;Dels=0.00;FS=6.517;HaplotypeScore=10.5389;MLEAC=1;MLEAF=0.500;MQ=14.76;MQ0=33;MQRankSum=-2.731;QD=1.71;ReadPosRankSum=2.263;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:19,47:105:34:210,0,34 chrXI 648032 . G A 165.03 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=12.80;MQ0=29;QD=1.70;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:3,90:96:24:198,24,0 chrXI 648035 . C A,T 91.03 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.962;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2381;MLEAC=1,1;MLEAF=0.500,0.500;MQ=13.56;MQ0=30;MQRankSum=-0.706;QD=0.82;ReadPosRankSum=-1.133;SB=-8.857e+01 GT:AD:DP:GQ:PL 1/2:3,9,99:111:51:151,88,79,63,0,51 chrXI 648101 . A T 478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DP=209;Dels=0.00;FS=23.599;HaplotypeScore=12.0867;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=34;MQRankSum=5.001;QD=2.29;ReadPosRankSum=-2.043;SB=-3.390e+02 GT:AD:DP:GQ:PL 0/1:126,82:209:99:508,0,738 chrXI 648128 . A G,T 1588.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.365;DP=190;Dels=0.00;FS=29.543;HaplotypeScore=4.7755;MLEAC=1,1;MLEAF=0.500,0.500;MQ=34.64;MQ0=19;MQRankSum=1.792;QD=8.36;ReadPosRankSum=0.239;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/2:12,115,63:190:99:1648,624,492,1024,0,946 chrXI 648143 . C T 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.262;DP=181;Dels=0.00;FS=20.531;HaplotypeScore=11.3209;MLEAC=1;MLEAF=0.500;MQ=37.59;MQ0=13;MQRankSum=-3.926;QD=1.42;ReadPosRankSum=-5.541;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:132,49:181:99:287,0,1167 chrXI 648152 . A C 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;DP=176;Dels=0.00;FS=24.699;HaplotypeScore=11.4445;MLEAC=1;MLEAF=0.500;MQ=39.31;MQ0=9;MQRankSum=-3.997;QD=0.97;ReadPosRankSum=-8.995;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,39:176:99:200,0,1359 chrXI 648627 . T G 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=95;Dels=0.00;FS=7.174;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.364;QD=19.25;ReadPosRankSum=2.397;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1862,207,0 chrXI 648695 . T C 1745 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.61;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1778,198,0 chrXI 648795 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.41;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2032,231,0 chrXI 649392 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1774,201,0 chrXI 649600 . C A 2582 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8909;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.34;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2615,288,0 chrXI 649635 . T C 2773 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.50;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2806,309,0 chrXI 649851 . C A 1338 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.33;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1371,147,0 chrXI 649880 . T C 1314 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.28;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1347,147,0 chrXI 650083 . A T 919 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.41;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:952,102,0 chrXI 650108 . C T 828 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.00;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:861,93,0 chrXI 650140 . A G 595 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.83;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:628,69,0 chrXI 650463 . G T 1389 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.37;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1422,156,0 chrXI 650642 . A T 1491 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.15;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1524,162,0 chrXI 651018 . T C 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.223;QD=22.12;ReadPosRankSum=1.630;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1537,174,0 chrXI 651082 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.34;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1832,198,0 chrXI 651373 . T C 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=2.775;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;MQRankSum=-0.012;QD=23.37;ReadPosRankSum=2.377;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2417,270,0 chrXI 651740 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.4856;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.95;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3534,393,0 chrXI 651958 . G A 2190 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.09;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2223,243,0 chrXI 651978 . T C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=6.788;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.204;QD=18.90;ReadPosRankSum=1.699;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2036,234,0 chrXI 652034 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=17.2832;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.46;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1849,204,0 chrXI 652240 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:925,105,0 chrXI 652398 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.49;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1037,114,0 chrXI 652478 . C A 1343 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1376,147,0 chrXI 652829 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1025,114,0 chrXI 652867 . T C 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=52;Dels=0.00;FS=2.660;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.341;QD=19.63;ReadPosRankSum=2.862;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:3,48:52:99:1054,120,0 chrXI 652995 . C T 2133 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.12;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2166,240,0 chrXI 652996 . C A 2100 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.63;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2133,240,0 chrXI 653013 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.84;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1971,216,0 chrXI 653105 . A T 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=3.724;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.840;QD=23.39;ReadPosRankSum=1.680;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1600,171,0 chrXI 653233 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.58;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1704,183,0 chrXI 653447 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.06;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1463,156,0 chrXI 654033 . T A 1448 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.35;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1481,162,0 chrXI 654112 . A C 1834 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.92;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1867,210,0 chrXI 654405 . A G 2022 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.06;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2055,237,0 chrXI 654510 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.06;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1697,189,0 chrXI 654576 . T C 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=4.771;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.462;QD=19.67;ReadPosRankSum=1.655;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1823,198,0 chrXI 654789 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.67;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1593,168,0 chrXI 654804 . T G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.245;QD=18.30;ReadPosRankSum=1.245;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1204,138,0 chrXI 654942 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.56;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1887,204,0 chrXI 654985 . T C 1977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.887;QD=23.82;ReadPosRankSum=1.690;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:2010,225,0 chrXI 655176 . A G 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.259;QD=22.59;ReadPosRankSum=1.653;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1998,228,0 chrXI 655841 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.69;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1213,132,0 chrXI 655981 . T G 1532 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.16;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1565,183,0 chrXI 656040 . C A 1480 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1513,162,0 chrXI 656134 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1608,174,0 chrXI 656226 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1526,168,0 chrXI 656592 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.527;QD=19.26;ReadPosRankSum=1.657;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1805,198,0 chrXI 656736 . G T 2421 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=14.1871;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.34;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2454,267,0 chrXI 656833 . T C 1850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9551;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.517;QD=19.47;ReadPosRankSum=2.346;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1883,207,0 chrXI 657110 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.4041;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.66;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2097,222,0 chrXI 657302 . G C 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.04;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.51;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1522,171,0 chrXI 657303 . C T 1553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.202;DP=97;Dels=0.00;FS=9.167;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=0.771;QD=16.01;ReadPosRankSum=3.075;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1586,171,0 chrXI 657311 . T C 1386 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.07;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1419,162,0 chrXI 657441 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.82;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1896,213,0 chrXI 657504 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.86;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1931,222,0 chrXI 657801 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=21.73;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1424,153,0 chrXI 657812 . T C 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=0.210;QD=17.56;ReadPosRankSum=1.680;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1192,132,0 chrXI 657838 . A C 1342 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.17;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1375,153,0 chrXI 657941 . T C 767 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.43;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:800,93,0 chrXI 657972 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.17;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1344,150,0 chrXI 657995 . A T 1460 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.16;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1493,159,0 chrXI 658021 . C G 1267 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=22.62;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1300,147,0 chrXI 658026 . A T 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.065;QD=23.72;ReadPosRankSum=2.277;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1385,147,0 chrXI 658079 . G A 657 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.76;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:690,75,0 chrXI 658175 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=20.56;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:691,75,0 chrXI 658182 . C G 666 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.00;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,35:37:78:699,78,0 chrXI 658219 . A G 676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=37;Dels=0.00;FS=19.294;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.572;QD=18.27;ReadPosRankSum=2.633;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:3,33:37:78:709,78,0 chrXI 658347 . G A 350 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;QD=9.21;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:42:383,42,0 chrXI 658396 . C T 557 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=13.26;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:63:590,63,0 chrXI 658419 . C T 615 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=15.37;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:648,69,0 chrXI 658489 . G A 617 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=18.15;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:650,72,0 chrXI 658515 . C G 809 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.26;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:96:842,96,0 chrXI 658746 . A C 212.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=18;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=1;MQRankSum=0.919;QD=11.78;ReadPosRankSum=-0.102;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:1,17:18:27:245,27,0 chrXI 659597 . T C 52.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.11;MQ0=18;QD=2.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:23:9:85,9,0 chrXI 659634 . A G 74.51 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.78;MQ0=24;QD=2.40;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:12:107,12,0 chrXI 659823 . G T 3709.01 filter AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7865;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=4;QD=22.62;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3709,408,0 chrXI 659991 . T C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=18;MQRankSum=-0.779;QD=0.79;ReadPosRankSum=-0.779;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,19:42:38:63,0,38 chrXI 660039 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.70;MQ0=18;QD=0.87;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:6:53,6,0 chrXI 660077 . A C 124.13 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.44;MQ0=37;QD=2.70;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:18:157,18,0 chrXI 660123 . G A 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.944;DP=111;Dels=0.00;FS=1.890;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.38;MQ0=60;MQRankSum=1.751;QD=1.78;ReadPosRankSum=-0.161;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:46,65:111:99:228,0,203 chrXI 660557 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.4930;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=1;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:5,5:11:37:43,0,37 chrXI 660700 . T C 74.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=6;QD=6.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:12:107,12,0 chrXI 660787 . C T 393 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=2;QD=20.68;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:45:426,45,0 chrXI 660798 . C T 492 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=3;QD=19.68;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:57:525,57,0 chrXI 660833 . A G 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.479;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=37.05;MQ0=3;MQRankSum=0.281;QD=7.63;ReadPosRankSum=-0.606;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:18,23:41:99:343,0,363 chrXI 660895 . G A 144.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=39.75;MQ0=3;MQRankSum=-0.348;QD=5.33;ReadPosRankSum=2.375;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:14,13:27:99:174,0,191 chrXI 660936 . T G 71.51 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=8;QD=3.97;SB=-7.455e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:104,12,0 chrXI 660998 . C T 215.45 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=11;MQRankSum=-0.744;QD=8.62;ReadPosRankSum=1.488;SB=-8.133e+01 GT:AD:DP:GQ:PL 1/1:3,22:25:7:247,7,0 chrXI 660999 . A G 268 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=11;QD=9.24;SB=-8.199e+01 GT:AD:DP:GQ:PL 1/1:0,25:29:33:301,33,0 chrXI 661030 . G A 494 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=5;QD=17.03;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:57:527,57,0 chrXI 661088 . G A 495 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=3;QD=16.50;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:528,57,0 chrXI 661093 . G C 464 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=3;QD=16.00;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:57:497,57,0 chrXI 661167 . C T 963 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=7;QD=16.05;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:996,108,0 chrXI 661199 . A G 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=2;MQRankSum=-0.257;QD=15.33;ReadPosRankSum=2.357;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:876,99,0 chrXI 661249 . A C 49.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=1;QD=5.55;SB=-8.247e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:82,9,0 chrXI 661279 . A G 38.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=3;QD=6.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,5:6:9:71,9,0 chrXI 661373 . A G 614 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=65;Dels=0.00;FS=2.218;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=19;MQRankSum=0.667;QD=9.45;ReadPosRankSum=2.803;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:72:647,72,0 chrXI 661398 . C A 630 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.03;FS=0.000;HaplotypeScore=22.7328;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=9;QD=10.86;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:663,72,0 chrXI 661424 . A G 828 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=5;QD=13.57;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:861,102,0 chrXI 661539 . C T 104.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=10;MQRankSum=0.742;QD=6.13;ReadPosRankSum=0.742;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:4,13:17:15:137,15,0 chrXI 661741 . C T 498 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=49;Dels=0.00;FS=8.302;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=13;MQRankSum=1.920;QD=10.16;ReadPosRankSum=-0.429;SB=-2.769e+02 GT:AD:DP:GQ:PL 1/1:16,33:49:35:531,35,0 chrXI 661789 . T C 178.03 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=18;QD=4.56;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,38:39:24:211,24,0 chrXI 661828 . A G 87.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.13;MQ0=13;MQRankSum=2.475;QD=3.23;ReadPosRankSum=1.909;SB=-2.706e+01 GT:AD:DP:GQ:PL 0/1:12,14:27:11:117,0,11 chrXI 661888 . C A 217.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=6;QD=13.56;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:250,27,0 chrXI 661960 . C T 188.03 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.72;MQ0=12;QD=8.55;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:24:221,24,0 chrXI 661963 . A T 188.03 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=14;QD=7.23;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:24:221,24,0 chrXI 662044 . C T 548 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=14;QD=11.91;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:63:581,63,0 chrXI 662123 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=10;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=4;MQRankSum=0.406;QD=2.08;ReadPosRankSum=1.537;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,7:10:6:52,6,0 chrXI 662530 . C T 324 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.40;MQ0=21;QD=8.53;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:39:357,39,0 chrXI 662659 . A G 413.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.371;DP=128;Dels=0.00;FS=6.894;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=49;MQRankSum=0.861;QD=3.23;ReadPosRankSum=-0.113;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:64,63:128:99:443,0,607 chrXI 662743 . T C 875 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=14;QD=12.87;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:908,105,0 chrXI 662980 . A G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.586;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=1;MLEAF=0.500;MQ=11.75;MQ0=87;MQRankSum=1.415;QD=0.55;ReadPosRankSum=0.146;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,52:104:87:87,0,174 chrXI 663021 . G A 553 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=42;QD=7.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:63:586,63,0 chrXI 663043 . G C 534 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.10;MQ0=20;QD=11.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:46:63:567,63,0 chrXI 663128 . A G 100.26 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.57;MQ0=13;QD=5.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:15:133,15,0 chrXI 663211 . G A 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;DP=77;Dels=0.00;FS=9.321;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=18.70;MQ0=13;MQRankSum=-2.830;QD=3.81;ReadPosRankSum=2.023;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:24,53:77:99:323,0,165 chrXI 663226 . T C 704 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=87;Dels=0.00;FS=8.278;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.51;MQ0=10;MQRankSum=-2.418;QD=8.09;ReadPosRankSum=2.386;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:84:737,84,0 chrXI 663255 . G A 661 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=5;QD=8.06;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:78:694,78,0 chrXI 663269 . A G 301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=62;Dels=0.00;FS=6.394;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=2;MQRankSum=-1.091;QD=4.85;ReadPosRankSum=2.368;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:39:334,39,0 chrXI 663275 . A G 253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=3.502;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=1;MQRankSum=1.114;QD=4.44;ReadPosRankSum=1.670;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:33:286,33,0 chrXI 663293 . C T 240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.168;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.58;MQ0=0;MQRankSum=-1.438;QD=5.11;ReadPosRankSum=1.290;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:30:273,30,0 chrXI 663324 . T A 123.13 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=10.1762;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=3;QD=2.16;SB=-2.081e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:18:156,18,0 chrXI 663350 . A T 768 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.306;DP=72;Dels=0.00;FS=3.658;HaplotypeScore=7.9185;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=7;MQRankSum=0.133;QD=10.67;ReadPosRankSum=1.679;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:90:801,90,0 chrXI 663380 . C T 1448 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=9;QD=14.63;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1481,159,0 chrXI 663423 . G A 1736 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=9;MQRankSum=-1.114;QD=18.27;ReadPosRankSum=-0.990;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1769,173,0 chrXI 663442 . G T 1490 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=4;QD=19.61;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1523,168,0 chrXI 663490 . A G 523.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402;DP=53;Dels=0.00;FS=1.585;HaplotypeScore=2.7044;MLEAC=1;MLEAF=0.500;MQ=33.27;MQ0=7;MQRankSum=-0.288;QD=9.87;ReadPosRankSum=3.517;SB=-1.380e+02 GT:AD:DP:GQ:PL 0/1:18,35:53:99:553,0,205 chrXI 663501 . G A 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.458;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=5;MQRankSum=1.446;QD=0.84;ReadPosRankSum=-2.031;SB=-5.007e+00 GT:AD:DP:GQ:PL 0/1:36,8:45:68:68,0,556 chrXI 663502 . G C 35.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=5;MQRankSum=0.712;QD=0.76;ReadPosRankSum=-1.993;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:37,8:46:65:65,0,603 chrXI 663509 . C A 772.45 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.603;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=4;MQRankSum=-1.605;QD=14.85;ReadPosRankSum=1.699;SB=-2.725e+02 GT:AD:DP:GQ:PL 1/1:6,46:52:7:804,7,0 chrXI 663534 . T C 536.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.298;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=4;MQRankSum=3.135;QD=7.24;ReadPosRankSum=-1.612;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:29,45:74:99:566,0,196 chrXI 663578 . A G 1339 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=7;QD=15.04;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1372,153,0 chrXI 663606 . A G 407.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=6;MQRankSum=1.740;QD=6.07;ReadPosRankSum=0.412;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:34,33:67:99:437,0,290 chrXI 663652 . A G 48.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=9;QD=1.36;SB=-1.307e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:9:81,9,0 chrXI 663653 . T A 54.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.162;DP=42;Dels=0.00;FS=5.487;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=10;MQRankSum=-2.991;QD=1.31;ReadPosRankSum=2.991;SB=-1.438e+02 GT:AD:DP:GQ:PL 1/1:5,37:42:9:87,9,0 chrXI 663684 . C G 652 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=7.9654;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=10;QD=8.93;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:81:685,81,0 chrXI 663690 . A G 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710;DP=77;Dels=0.00;FS=0.938;HaplotypeScore=5.4434;MLEAC=1;MLEAF=0.500;MQ=36.13;MQ0=12;MQRankSum=-0.321;QD=3.42;ReadPosRankSum=0.728;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:39,38:77:99:293,0,367 chrXI 663759 . T C 1010 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=86;Dels=0.00;FS=10.744;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=36.89;MQ0=8;MQRankSum=1.533;QD=11.74;ReadPosRankSum=2.387;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1043,117,0 chrXI 663774 . A T 1172 filter AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=8;QD=12.60;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1205,132,0 chrXI 663816 . G A 859 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=3;QD=11.61;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:892,99,0 chrXI 663830 . G A 985 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=7;QD=11.73;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1018,111,0 chrXI 663881 . T C 1108 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=17;MQRankSum=0.678;QD=12.88;ReadPosRankSum=1.682;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1141,129,0 chrXI 663906 . A G 1274 filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=17;QD=14.16;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1307,150,0 chrXI 664053 . C T 1289 filter AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=11;QD=11.31;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1322,141,0 chrXI 664104 . A G 639 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=7;MQRankSum=-1.022;QD=13.89;ReadPosRankSum=1.644;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:75:672,75,0 chrXI 664144 . C T 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=6;QD=1.63;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:6:54,6,0 chrXI 664233 . C T 3160 filter AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=8;QD=20.39;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:3193,357,0 chrXI 664262 . T C 3840.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.318;DP=186;Dels=0.00;FS=2.414;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=1;MQRankSum=-0.269;QD=20.65;ReadPosRankSum=3.252;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:4,182:186:99:3840,447,0 chrXI 664278 . A G 3705.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=6.125;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=-1.423;QD=22.05;ReadPosRankSum=1.711;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3705,417,0 chrXI 664299 . A G 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.01;FS=3.979;HaplotypeScore=3.6686;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;MQRankSum=-0.272;QD=18.49;ReadPosRankSum=1.707;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:2658,303,0 chrXI 664310 . A G 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=169;Dels=0.00;FS=12.727;HaplotypeScore=11.6114;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=2;MQRankSum=-0.488;QD=16.50;ReadPosRankSum=2.957;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:3,162:169:99:2822,330,0 chrXI 664483 . A T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=10;MQRankSum=1.780;QD=1.00;ReadPosRankSum=2.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,16:27:57:57,0,108 chrXI 664494 . G A 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=24.36;MQ0=3;MQRankSum=0.380;QD=2.35;ReadPosRankSum=-0.456;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,10:23:84:84,0,129 chrXI 664498 . G A 326 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=2;QD=14.17;SB=-7.578e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:39:359,39,0 chrXI 664525 . G A 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.848;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=13;MQRankSum=-0.822;QD=4.20;ReadPosRankSum=1.468;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,25:51:99:244,0,389 chrXI 664553 . T C 685.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=34;MQRankSum=1.330;QD=5.61;ReadPosRankSum=1.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,59:122:99:715,0,505 chrXI 664620 . A C 706.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.731;DP=181;Dels=0.00;FS=26.100;HaplotypeScore=10.4307;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=41;MQRankSum=-1.286;QD=3.90;ReadPosRankSum=-0.959;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:91,90:181:99:736,0,728 chrXI 664633 . C G 771.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.320;DP=160;Dels=0.00;FS=26.037;HaplotypeScore=76.0778;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=29;MQRankSum=-0.842;QD=4.82;ReadPosRankSum=-1.942;SB=-3.880e+02 GT:AD:DP:GQ:PL 0/1:77,81:160:99:801,0,541 chrXI 664643 . T A 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;DP=136;Dels=0.00;FS=52.022;HaplotypeScore=6.5141;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=26;MQRankSum=-0.772;QD=3.35;ReadPosRankSum=-1.094;SB=-6.510e+02 GT:AD:DP:GQ:PL 0/1:70,66:136:99:485,0,596 chrXI 664644 . T C 420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.814;DP=136;Dels=0.00;FS=49.052;HaplotypeScore=4.9367;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=28;MQRankSum=-2.268;QD=3.09;ReadPosRankSum=-1.246;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:71,64:136:99:450,0,569 chrXI 664654 . G A 453.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.836;DP=131;Dels=0.00;FS=45.399;HaplotypeScore=4.9255;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=27;MQRankSum=-0.384;QD=3.46;ReadPosRankSum=0.585;SB=-6.620e+02 GT:AD:DP:GQ:PL 0/1:65,65:131:99:483,0,577 chrXI 664656 . G A 451.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.107;DP=133;Dels=0.00;FS=48.776;HaplotypeScore=8.6642;MLEAC=1;MLEAF=0.500;MQ=25.40;MQ0=27;MQRankSum=-1.369;QD=3.39;ReadPosRankSum=0.949;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:67,65:133:99:481,0,590 chrXI 664667 . C A 358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;DP=128;Dels=0.00;FS=55.912;HaplotypeScore=12.1348;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=24;MQRankSum=0.738;QD=2.80;ReadPosRankSum=-0.509;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,56:128:99:388,0,508 chrXI 664673 . G A 429.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=124;Dels=0.00;FS=57.690;HaplotypeScore=9.2377;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=23;MQRankSum=-0.283;QD=3.46;ReadPosRankSum=0.504;SB=-5.790e+02 GT:AD:DP:GQ:PL 0/1:53,71:124:99:459,0,329 chrXI 664723 . T C 287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=123;Dels=0.00;FS=73.856;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.89;MQ0=25;MQRankSum=-1.964;QD=2.33;ReadPosRankSum=1.035;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:51,70:123:99:317,0,399 chrXI 664742 . A G 224.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DP=113;Dels=0.00;FS=64.764;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=19;MQRankSum=-3.377;QD=1.98;ReadPosRankSum=0.858;SB=-1.775e+02 GT:AD:DP:GQ:PL 0/1:45,68:113:99:254,0,448 chrXI 664748 . C A 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;DP=116;Dels=0.00;FS=61.086;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=21;MQRankSum=-3.189;QD=2.15;ReadPosRankSum=0.920;SB=-2.206e+02 GT:AD:DP:GQ:PL 0/1:48,68:116:99:279,0,407 chrXI 664760 . A C 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.835;DP=100;Dels=0.00;FS=42.660;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=22;MQRankSum=-3.265;QD=1.26;ReadPosRankSum=-0.241;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:44,55:100:99:156,0,410 chrXI 664761 . A G 131.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.049;DP=100;Dels=0.00;FS=42.660;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=22;MQRankSum=-2.740;QD=1.31;ReadPosRankSum=-0.241;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:45,55:100:99:161,0,419 chrXI 664769 . T C 85.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.567;DP=97;Dels=0.00;FS=32.961;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=20;MQRankSum=-0.543;QD=0.88;ReadPosRankSum=-0.147;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:43,53:97:99:115,0,326 chrXI 664774 . C T 122.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;DP=92;Dels=0.00;FS=33.395;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=18;MQRankSum=-2.087;QD=1.33;ReadPosRankSum=-1.442;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:38,54:92:99:152,0,314 chrXI 664805 . A T 227.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;DP=54;Dels=0.00;FS=26.142;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=10;MQRankSum=-0.596;QD=4.20;ReadPosRankSum=0.623;SB=0.128 GT:AD:DP:GQ:PL 0/1:21,33:54:99:257,0,128 chrXI 664809 . A G 221.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;DP=51;Dels=0.00;FS=27.267;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=9;MQRankSum=-1.609;QD=4.33;ReadPosRankSum=0.871;SB=0.028 GT:AD:DP:GQ:PL 0/1:19,32:51:99:251,0,126 chrXI 664835 . A G 462 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.840;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=6;MQRankSum=2.651;QD=12.16;ReadPosRankSum=1.681;SB=-1.341e-02 GT:AD:DP:GQ:PL 1/1:9,29:38:31:495,31,0 chrXI 664865 . G T 751 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=20.86;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:87:784,87,0 chrXI 664992 . G A 2504 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=31;QD=17.63;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:23,115:142:99:2537,270,0 chrXI 665090 . G A 1237.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.704;DP=113;Dels=0.00;FS=5.357;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=2;MQRankSum=1.742;QD=10.95;ReadPosRankSum=-1.621;SB=-6.700e+02 GT:AD:DP:GQ:PL 0/1:38,75:113:99:1267,0,361 chrXI 665115 . G A 414.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;DP=119;Dels=0.00;FS=30.831;HaplotypeScore=8.7986;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=2;MQRankSum=-2.691;QD=3.48;ReadPosRankSum=-1.218;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:71,48:119:99:444,0,1300 chrXI 665125 . C T 1351.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.838;DP=117;Dels=0.00;FS=48.033;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=2;MQRankSum=4.515;QD=11.55;ReadPosRankSum=-0.096;SB=-5.329e+02 GT:AD:DP:GQ:PL 0/1:41,76:117:99:1381,0,478 chrXI 665163 . C T 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.287;DP=73;Dels=0.00;FS=45.579;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=29.06;MQ0=2;MQRankSum=-3.972;QD=2.10;ReadPosRankSum=1.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,19:73:99:183,0,1081 chrXI 665170 . T C 1037.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632;DP=71;Dels=0.00;FS=53.423;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=1;MQRankSum=4.147;QD=14.61;ReadPosRankSum=0.264;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/1:20,51:71:99:1067,0,185 chrXI 665172 . T C 115.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DP=74;Dels=0.00;FS=41.163;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=1;MQRankSum=-3.407;QD=1.55;ReadPosRankSum=1.327;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,17:74:99:145,0,1085 chrXI 665180 . G A 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;DP=70;Dels=0.00;FS=45.543;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=28.75;MQ0=0;MQRankSum=-3.392;QD=1.16;ReadPosRankSum=-0.077;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,16:70:99:111,0,1000 chrXI 665216 . C T 481 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=0;QD=15.03;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,29:32:63:514,63,0 chrXI 665227 . A C 390 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=0;QD=17.73;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:423,54,0 chrXI 665232 . A G 392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=0;MQRankSum=-1.179;QD=15.68;ReadPosRankSum=1.595;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:54:425,54,0 chrXI 665268 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=19.03;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:623,69,0 chrXI 665280 . C G 642 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=18.88;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:75:675,75,0 chrXI 665287 . C T 550 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:69:583,69,0 chrXI 665296 . G A 719 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:81:752,81,0 chrXI 665316 . A G 809 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.527;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.657;QD=17.59;ReadPosRankSum=0.979;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:71:842,71,0 chrXI 665317 . G A 838 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.452;QD=18.22;ReadPosRankSum=1.130;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,45:46:71:871,71,0 chrXI 665320 . G A 881 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.588;QD=18.35;ReadPosRankSum=1.227;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:78:914,78,0 chrXI 665330 . G A 768 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=17.3917;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;MQRankSum=-0.840;QD=15.06;ReadPosRankSum=2.843;SB=-3.992e-03 GT:AD:DP:GQ:PL 1/1:4,46:51:46:801,46,0 chrXI 665333 . A G 791 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;MQRankSum=0.858;QD=15.82;ReadPosRankSum=2.860;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,47:50:93:824,93,0 chrXI 665337 . T C 699.02 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=51;Dels=0.00;FS=35.527;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=29.33;MQ0=0;MQRankSum=-0.764;QD=13.71;ReadPosRankSum=3.820;SB=-3.346e-02 GT:AD:DP:GQ:PL 1/1:8,43:51:25:732,25,0 chrXI 665385 . A G 431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;DP=47;Dels=0.00;FS=20.944;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.92;MQ0=0;MQRankSum=-0.817;QD=9.17;ReadPosRankSum=-1.570;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:11,36:47:57:461,0,57 chrXI 665398 . A G 334.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;DP=48;Dels=0.00;FS=21.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=-0.147;QD=6.96;ReadPosRankSum=-0.172;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:11,37:48:98:364,0,98 chrXI 665402 . T A 292.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;DP=45;Dels=0.00;FS=22.061;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=0;MQRankSum=-1.543;QD=6.49;ReadPosRankSum=0.669;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:10,35:45:99:322,0,101 chrXI 665498 . T C 41.97 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=8.0231;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=0;QD=2.10;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:9:74,9,0 chrXI 665513 . G A 138.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=4.7585;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=0;MQRankSum=-1.037;QD=6.00;ReadPosRankSum=1.691;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:2,21:23:28:168,0,28 chrXI 665517 . C T 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=0;MQRankSum=-1.255;QD=5.04;ReadPosRankSum=1.255;SB=-3.022e+00 GT:AD:DP:GQ:PL 0/1:2,21:23:26:146,0,26 chrXI 665524 . C T 120.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=23;Dels=0.00;FS=24.031;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=0;MQRankSum=-1.146;QD=5.22;ReadPosRankSum=1.146;SB=-3.020e+00 GT:AD:DP:GQ:PL 0/1:2,21:23:28:150,0,28 chrXI 665550 . T C 165.02 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=44;Dels=0.00;FS=3.112;HaplotypeScore=1.9866;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=0;MQRankSum=1.021;QD=3.75;ReadPosRankSum=3.673;SB=-2.020e-02 GT:AD:DP:GQ:PL 0/1:22,22:44:22:195,0,22 chrXI 665600 . A G 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=0;MQRankSum=-0.736;QD=3.87;ReadPosRankSum=0.736;SB=0.195 GT:AD:DP:GQ:PL 0/1:1,5:6:10:53,0,10 chrXI 665602 . G A 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=0;MQRankSum=0.736;QD=3.87;ReadPosRankSum=0.736;SB=0.195 GT:AD:DP:GQ:PL 0/1:1,5:6:10:53,0,10 chrXI 665606 . A T 23.24 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=0;MQRankSum=-0.736;QD=3.87;ReadPosRankSum=0.736;SB=0.195 GT:AD:DP:GQ:PL 0/1:1,5:6:10:53,0,10 chrXI 665609 . A G 33.04 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.68;MQ0=0;QD=5.51;SB=9.47 GT:AD:DP:GQ:PL 1/1:0,5:6:9:65,9,0 chrXI 665610 . A G 54.51 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=0;QD=9.09;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:87,12,0 chrXI 665629 . A T 32.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;MQRankSum=0.727;QD=8.24;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:65,9,0 chrXI 665791 . T C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=0;QD=1.87;SB=-2.826e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:48,6,0 chrXI 665976 . G A 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DP=70;Dels=0.00;FS=3.204;HaplotypeScore=16.4759;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=7;MQRankSum=-1.766;QD=1.07;ReadPosRankSum=3.523;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,17:70:99:105,0,620 chrXI 665983 . T C 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.034;DP=71;Dels=0.00;FS=3.129;HaplotypeScore=15.6100;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=8;MQRankSum=-2.145;QD=0.96;ReadPosRankSum=2.687;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,17:71:98:98,0,686 chrXI 665985 . A G 646.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;DP=72;Dels=0.00;FS=3.129;HaplotypeScore=15.6100;MLEAC=1;MLEAF=0.500;MQ=18.97;MQ0=9;MQRankSum=1.510;QD=8.97;ReadPosRankSum=-0.952;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:17,54:72:99:676,0,100 chrXI 665998 . A T 481.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;DP=74;Dels=0.00;FS=9.935;HaplotypeScore=12.8083;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=10;MQRankSum=0.581;QD=6.50;ReadPosRankSum=2.508;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:36,38:74:99:511,0,256 chrXI 666005 . G A 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.964;DP=75;Dels=0.00;FS=3.098;HaplotypeScore=13.7978;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=11;MQRankSum=-2.523;QD=0.85;ReadPosRankSum=-2.478;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,17:75:94:94,0,668 chrXI 666006 . A T 489.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DP=75;Dels=0.00;FS=9.935;HaplotypeScore=13.7978;MLEAC=1;MLEAF=0.500;MQ=18.89;MQ0=11;MQRankSum=-0.157;QD=6.52;ReadPosRankSum=2.618;SB=-1.600e+02 GT:AD:DP:GQ:PL 0/1:37,38:75:99:519,0,298 chrXI 666019 . T A,C 569.01 filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.860;DP=72;Dels=0.00;FS=5.084;HaplotypeScore=1.9841;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.75;MQ0=11;MQRankSum=-2.095;QD=7.90;ReadPosRankSum=-2.385;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/2:16,17,39:72:99:629,440,511,100,0,123 chrXI 666030 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;DP=35;Dels=0.00;FS=6.021;HaplotypeScore=7.9336;MLEAC=1;MLEAF=0.500;MQ=17.96;MQ0=10;MQRankSum=1.798;QD=0.46;ReadPosRankSum=1.882;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,11:35:46:46,0,214 chrXI 666195 . T A 18.19 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=7.8801;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=0;MQRankSum=1.231;QD=2.02;ReadPosRankSum=1.231;SB=-1.201e-01 GT:AD:DP:GQ:PL 0/1:3,2:9:13:48,0,13 chrXI 666196 . T A 35.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=7.8801;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=0;MQRankSum=1.001;QD=3.91;ReadPosRankSum=0.573;SB=-2.047e-01 GT:AD:DP:GQ:PL 0/1:3,6:9:10:65,0,10 chrXI 666198 . A G 33.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.9304;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=0;MQRankSum=0.876;QD=3.69;ReadPosRankSum=0.876;SB=-2.184e-01 GT:AD:DP:GQ:PL 0/1:4,5:9:10:63,0,10 chrXI 666258 . G A 73.79 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.8829;MLEAC=1;MLEAF=0.500;MQ=21.67;MQ0=0;MQRankSum=0.591;QD=2.73;ReadPosRankSum=-1.054;SB=-7.949e-01 GT:AD:DP:GQ:PL 0/1:13,14:27:4:103,0,4 chrXI 666280 . C A 109.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=25;Dels=0.00;FS=6.198;HaplotypeScore=8.7940;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;MQRankSum=1.368;QD=4.37;ReadPosRankSum=0.668;SB=3.40 GT:AD:DP:GQ:PL 1/1:6,19:25:18:142,18,0 chrXI 666281 . G T 104.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=9.7834;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=4.17;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:137,18,0 chrXI 666286 . G A 108.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=30;Dels=0.00;FS=9.208;HaplotypeScore=29.9546;MLEAC=2;MLEAF=1.00;MQ=19.82;MQ0=0;MQRankSum=-0.962;QD=3.60;ReadPosRankSum=0.878;SB=3.99 GT:AD:DP:GQ:PL 1/1:4,22:30:18:141,18,0 chrXI 666287 . A T 108.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.068;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=41.8526;MLEAC=2;MLEAF=1.00;MQ=19.82;MQ0=0;MQRankSum=1.805;QD=3.60;ReadPosRankSum=0.558;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:4,25:29:18:141,18,0 chrXI 666303 . G A 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=27.8380;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=0;QD=3.41;SB=-4.414e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:18:142,18,0 chrXI 666304 . C G 107.13 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=27.8380;MLEAC=2;MLEAF=1.00;MQ=21.04;MQ0=0;QD=3.35;SB=-4.714e+01 GT:AD:DP:GQ:PL 1/1:0,30:31:18:140,18,0 chrXI 666311 . A G 107.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.874;DP=36;Dels=0.00;FS=11.927;HaplotypeScore=26.6299;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=1;MQRankSum=-1.054;QD=2.98;ReadPosRankSum=0.664;SB=2.87 GT:AD:DP:GQ:PL 1/1:11,25:36:18:140,18,0 chrXI 666348 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.850;DP=32;Dels=0.00;FS=4.238;HaplotypeScore=8.3155;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=3;MQRankSum=0.129;QD=1.19;ReadPosRankSum=1.076;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:3,28:32:9:70,9,0 chrXI 666412 . A G 168.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.857;DP=28;Dels=0.00;FS=5.259;HaplotypeScore=28.7562;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;MQRankSum=0.297;QD=6.00;ReadPosRankSum=2.748;SB=-2.199e+01 GT:AD:DP:GQ:PL 1/1:3,25:28:24:201,24,0 chrXI 666413 . C G 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=27.3025;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=0.077;QD=2.56;ReadPosRankSum=1.312;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:12,14:27:60:99,0,60 chrXI 666415 . G C 69.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=21.6153;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=0.952;QD=2.56;ReadPosRankSum=1.106;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:14,12:27:59:99,0,59 chrXI 666420 . C T 145.06 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.150;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=24.5203;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=0;MQRankSum=-0.150;QD=5.37;ReadPosRankSum=1.452;SB=-2.194e+01 GT:AD:DP:GQ:PL 1/1:2,23:27:21:178,21,0 chrXI 666459 . A C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=6.9344;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=0;MQRankSum=0.761;QD=0.80;ReadPosRankSum=-1.268;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:10,3:13:40:40,0,62 chrXI 666535 . A G 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=11.4205;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=1.32;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:47,6,0 chrXII 5305 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrXII 5646 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=5;QD=6.12;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:81,9,0 chrXII 5647 . A G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=5;QD=6.12;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:81,9,0 chrXII 5656 . T G 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=5;QD=6.25;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:82,9,0 chrXII 5756 . C T 444 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=1;QD=17.76;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:477,66,0 chrXII 5788 . A G 444 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=1;QD=17.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:66:477,66,0 chrXII 5803 . C T 422 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=18.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:63:455,63,0 chrXII 5807 . C G 444 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.73;MQ0=0;QD=19.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:66:477,66,0 chrXII 6095 . C G 54.51 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=3.63;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:12:87,12,0 chrXII 6119 . T A 97.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=0;QD=5.40;SB=-1.419e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:130,18,0 chrXII 6140 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=5.02;SB=-2.718e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:108,15,0 chrXII 6147 . T C 75.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=17.1971;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=0;QD=5.02;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:108,15,0 chrXII 10894 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=1;QD=4.56;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:54,6,0 chrXII 11181 . C A 93.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=5;MQRankSum=-0.736;QD=8.48;ReadPosRankSum=0.736;SB=-4.930e+01 GT:AD:DP:GQ:PL 1/1:1,10:11:15:126,15,0 chrXII 11191 . T G 92.26 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=12.3435;MLEAC=2;MLEAF=1.00;MQ=19.13;MQ0=5;QD=7.69;SB=-4.830e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:15:125,15,0 chrXII 11198 . A C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=16;Dels=0.00;FS=14.771;HaplotypeScore=8.4340;MLEAC=1;MLEAF=0.500;MQ=17.54;MQ0=6;MQRankSum=1.568;QD=2.44;ReadPosRankSum=1.866;SB=-1.804e+01 GT:AD:DP:GQ:PL 0/1:12,4:16:50:69,0,50 chrXII 11224 . A C 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=11.2848;MLEAC=1;MLEAF=0.500;MQ=19.29;MQ0=3;MQRankSum=-1.564;QD=1.23;ReadPosRankSum=-0.127;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:14,7:21:57:57,0,118 chrXII 11317 . C A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=16.3042;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=9;MQRankSum=0.278;QD=2.32;ReadPosRankSum=1.034;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,4:21:81:81,0,81 chrXII 11448 . T C 66.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.528;DP=23;Dels=0.00;FS=3.617;HaplotypeScore=7.5737;MLEAC=2;MLEAF=1.00;MQ=20.40;MQ0=0;MQRankSum=1.432;QD=2.89;ReadPosRankSum=0.829;SB=-1.915e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:12:99,12,0 chrXII 11458 . G A 67.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=13.3292;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=0;QD=3.75;SB=-1.145e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:12:100,12,0 chrXII 11540 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=11;Dels=0.00;FS=15.441;HaplotypeScore=6.5428;MLEAC=2;MLEAF=1.00;MQ=18.84;MQ0=3;MQRankSum=-0.550;QD=1.09;ReadPosRankSum=0.550;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,4:11:6:43,6,0 chrXII 11546 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754;DP=10;Dels=0.00;FS=8.451;HaplotypeScore=16.5438;MLEAC=2;MLEAF=1.00;MQ=17.68;MQ0=3;MQRankSum=-0.550;QD=1.20;ReadPosRankSum=0.937;SB=1.45 GT:AD:DP:GQ:PL 1/1:6,3:10:6:43,6,0 chrXII 11587 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=3.680;HaplotypeScore=5.6103;MLEAC=2;MLEAF=1.00;MQ=18.63;MQ0=0;MQRankSum=-0.742;QD=1.72;ReadPosRankSum=-0.742;SB=-1.726e+01 GT:AD:DP:GQ:PL 1/1:1,6:7:6:43,6,0 chrXII 11618 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=0;QD=4.01;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrXII 11619 . T A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=7;Dels=0.00;FS=8.451;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;MQRankSum=-1.300;QD=1.72;ReadPosRankSum=1.754;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:4,3:7:6:43,6,0 chrXII 11652 . T C 69.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.143;DP=12;Dels=0.00;FS=12.175;HaplotypeScore=1.9861;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=1;MQRankSum=0.466;QD=5.79;ReadPosRankSum=2.637;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:5,7:12:12:102,12,0 chrXII 11672 . T C 87.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=9.9058;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=1;MQRankSum=-1.296;QD=3.35;ReadPosRankSum=1.129;SB=-3.916e+01 GT:AD:DP:GQ:PL 0/1:3,23:26:10:117,0,10 chrXII 11684 . T C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=44;Dels=0.00;FS=9.978;HaplotypeScore=14.6631;MLEAC=1;MLEAF=0.500;MQ=20.41;MQ0=5;MQRankSum=1.006;QD=1.68;ReadPosRankSum=0.787;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:36,8:44:99:104,0,109 chrXII 11703 . A T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;DP=53;Dels=0.00;FS=14.301;HaplotypeScore=6.5284;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=7;MQRankSum=0.304;QD=0.47;ReadPosRankSum=-1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,10:53:55:55,0,316 chrXII 11711 . G T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=11.165;HaplotypeScore=2.9900;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=7;MQRankSum=0.707;QD=0.44;ReadPosRankSum=-2.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,9:50:52:52,0,290 chrXII 11717 . T C 329 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1845;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=6;QD=7.15;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:42:362,42,0 chrXII 11772 . C T 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=15;Dels=0.00;FS=20.560;HaplotypeScore=10.4602;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=0;MQRankSum=0.505;QD=2.00;ReadPosRankSum=-1.371;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:12,3:15:60:60,0,84 chrXII 11846 . T C 54.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.37;MQ0=2;QD=7.79;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:12:87,12,0 chrXII 11874 . T C 54.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=20;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.40;MQ0=14;MQRankSum=-0.736;QD=2.73;ReadPosRankSum=0.736;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,19:20:12:87,12,0 chrXII 11879 . C G 75.26 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.40;MQ0=14;QD=3.76;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:4,16:20:15:108,15,0 chrXII 11911 . C T 42.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=25;Dels=0.00;FS=7.782;HaplotypeScore=2.7007;MLEAC=1;MLEAF=0.500;MQ=12.23;MQ0=16;MQRankSum=-1.307;QD=1.69;ReadPosRankSum=0.000;SB=-3.370e-01 GT:AD:DP:GQ:PL 0/1:11,14:25:8:72,0,8 chrXII 11965 . G A 25.92 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=9.6862;MLEAC=1;MLEAF=0.500;MQ=22.14;MQ0=2;MQRankSum=0.751;QD=2.16;ReadPosRankSum=0.751;SB=15.36 GT:AD:DP:GQ:PL 1/1:1,10:12:6:57,6,0 chrXII 11993 . C T 38.11 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.8924;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=0;MQRankSum=1.061;QD=3.46;ReadPosRankSum=-2.003;SB=1.34 GT:AD:DP:GQ:PL 0/1:2,9:11:13:68,0,13 chrXII 12002 . T G 81.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.8031;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=0.480;QD=8.15;ReadPosRankSum=1.271;SB=2.49 GT:AD:DP:GQ:PL 1/1:2,8:10:12:114,12,0 chrXII 12003 . T C 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=8.8031;MLEAC=1;MLEAF=0.500;MQ=25.30;MQ0=0;MQRankSum=-0.480;QD=1.81;ReadPosRankSum=0.000;SB=-6.588e-03 GT:AD:DP:GQ:PL 0/1:8,2:10:45:48,0,45 chrXII 12022 . A C 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=5.7747;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=0;MQRankSum=-0.937;QD=1.75;ReadPosRankSum=0.550;SB=-6.605e-03 GT:AD:DP:GQ:PL 0/1:4,3:7:42:42,0,44 chrXII 12027 . C T 34.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.747;QD=4.26;ReadPosRankSum=0.747;SB=0.897 GT:AD:DP:GQ:PL 0/1:1,7:8:15:64,0,15 chrXII 13524 . T C 126.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=6;MQRankSum=0.442;QD=3.41;ReadPosRankSum=2.292;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:5,32:37:18:159,18,0 chrXII 13561 . T A 341 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=16;QD=5.33;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:13,51:64:45:374,45,0 chrXII 13593 . C T 364 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.32;MQ0=22;QD=4.44;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:15,67:82:48:397,48,0 chrXII 13614 . A G 226 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.56;MQ0=19;QD=3.10;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:19,54:73:33:259,33,0 chrXII 13616 . T C 202 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.89;MQ0=18;MQRankSum=-2.053;QD=2.73;ReadPosRankSum=2.362;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:8,66:74:30:235,30,0 chrXII 13651 . T A 85.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.25;MQ0=5;MQRankSum=-1.732;QD=1.38;ReadPosRankSum=1.670;SB=-2.726e-01 GT:AD:DP:GQ:PL 1/1:1,60:62:15:118,15,0 chrXII 13683 . G A 146.06 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=16.31;MQ0=4;QD=2.92;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:21:179,21,0 chrXII 13693 . C G 141.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DP=49;Dels=0.00;FS=29.759;HaplotypeScore=4.9929;MLEAC=2;MLEAF=1.00;MQ=17.09;MQ0=5;MQRankSum=1.888;QD=2.88;ReadPosRankSum=0.817;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:6,43:49:21:174,21,0 chrXII 13698 . G A 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=47;Dels=0.00;FS=29.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=6;MQRankSum=1.967;QD=3.15;ReadPosRankSum=-0.514;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,44:47:21:181,21,0 chrXII 13699 . T C 143.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.846;DP=47;Dels=0.00;FS=29.138;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.29;MQ0=6;MQRankSum=1.967;QD=3.04;ReadPosRankSum=-0.514;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:3,44:47:21:176,21,0 chrXII 13715 . T C 49.97 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.93;MQ0=9;QD=1.32;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:4,34:38:9:82,9,0 chrXII 13727 . A G 35.12 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;DP=36;Dels=0.00;FS=34.757;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=18.29;MQ0=10;MQRankSum=1.822;QD=0.98;ReadPosRankSum=0.065;SB=-3.081e+00 GT:AD:DP:GQ:PL 0/1:14,22:36:13:65,0,13 chrXII 13730 . C T 39.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;DP=37;Dels=0.00;FS=34.757;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=18.57;MQ0=11;MQRankSum=2.017;QD=1.06;ReadPosRankSum=-0.325;SB=-3.081e+00 GT:AD:DP:GQ:PL 0/1:15,22:37:13:69,0,13 chrXII 13875 . A T 567 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.03;MQ0=3;QD=11.12;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:600,66,0 chrXII 13876 . G T 571 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=3;QD=10.57;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:66:604,66,0 chrXII 13986 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;QD=18.56;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1926,213,0 chrXII 14041 . A T 1626 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=18.91;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1659,186,0 chrXII 14233 . A T 1209 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.50;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1242,132,0 chrXII 14244 . G C 1150 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.49;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1183,132,0 chrXII 14254 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.97;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1209,132,0 chrXII 14318 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.53;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1790,189,0 chrXII 14464 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.02;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:974,111,0 chrXII 14473 . A G 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=3.711;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=-0.774;QD=19.81;ReadPosRankSum=0.479;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:964,108,0 chrXII 14504 . G T 835 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.40;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:868,96,0 chrXII 14630 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.8979;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.52;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2293,246,0 chrXII 14765 . A G 1916 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.53;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1949,216,0 chrXII 14785 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.31;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1516,165,0 chrXII 14798 . C A 1361 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.91;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1394,147,0 chrXII 14801 . T A 1367 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=17.53;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1400,150,0 chrXII 14934 . C G 2619 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.9599;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.79;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2652,300,0 chrXII 15102 . T G 3494.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=2.696;HaplotypeScore=8.1683;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.431;QD=23.14;ReadPosRankSum=2.352;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:3494,396,0 chrXII 15147 . T G 2920 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.81;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2953,330,0 chrXII 15187 . G T 1689 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.85;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1722,192,0 chrXII 15466 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.10;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2060,219,0 chrXII 15467 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.18;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:1991,219,0 chrXII 15717 . G A 3431.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.1348;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=25.41;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3431,366,0 chrXII 15806 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.9323;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.50;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2309,258,0 chrXII 15923 . A C 2821 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.44;SB=-1.660e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2854,321,0 chrXII 15995 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.03;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2493,273,0 chrXII 16099 . A T 2708 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.94;SB=-1.740e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2741,297,0 chrXII 16137 . T C 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=132;Dels=0.00;FS=7.036;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=0.736;QD=19.60;ReadPosRankSum=2.412;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2620,291,0 chrXII 16146 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=124;Dels=0.00;FS=2.971;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=0.575;QD=19.35;ReadPosRankSum=2.389;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:2,120:124:99:2433,270,0 chrXII 16175 . A C 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.00;FS=2.851;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.582;QD=19.42;ReadPosRankSum=2.362;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:2,110:115:99:2266,258,0 chrXII 16311 . G A 3492.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.4828;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.10;SB=-1.746e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:3492,375,0 chrXII 16338 . A C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.845;QD=19.92;ReadPosRankSum=1.677;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2543,282,0 chrXII 16487 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=20.29;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2021,216,0 chrXII 16523 . C G 1720 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=15.78;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1753,198,0 chrXII 16528 . G A 1735 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=15.63;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1768,189,0 chrXII 16531 . T C 1630 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=16.769;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;MQRankSum=-2.286;QD=15.38;ReadPosRankSum=2.915;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,103:106:99:1663,183,0 chrXII 16532 . T C 1625 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=15.33;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1658,183,0 chrXII 16562 . T A 2205 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=18.37;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2238,243,0 chrXII 16672 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.51;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1646,180,0 chrXII 16757 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.09;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1263,135,0 chrXII 16960 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.78;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1121,120,0 chrXII 17170 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.45;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1229,132,0 chrXII 17651 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.22;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1655,177,0 chrXII 17679 . T G 1399 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.16;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1432,162,0 chrXII 17745 . C G 1311 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.57;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1344,147,0 chrXII 17755 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.09;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1383,147,0 chrXII 17865 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.88;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1703,186,0 chrXII 17874 . T G 1520 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.31;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1553,174,0 chrXII 17945 . A C 1248 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.15;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1281,144,0 chrXII 17994 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.68;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1509,162,0 chrXII 18003 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.25;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1402,156,0 chrXII 18087 . G C 1434 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.87;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1467,165,0 chrXII 18108 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.93;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1678,186,0 chrXII 18183 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.6654;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.37;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2181,237,0 chrXII 18460 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.4577;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.11;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2010,213,0 chrXII 18699 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1918,213,0 chrXII 19419 . A G 1531 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.63;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1564,174,0 chrXII 19593 . C T 1056 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.71;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1089,117,0 chrXII 19608 . G C 980 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.22;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1013,111,0 chrXII 19712 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.25;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1057,111,0 chrXII 19819 . T G 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.56;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1246,141,0 chrXII 19832 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.98;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1352,147,0 chrXII 20402 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=16.78;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1627,186,0 chrXII 20461 . A G 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.213;QD=20.41;ReadPosRankSum=1.689;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1666,183,0 chrXII 20672 . A T 984 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.92;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1017,114,0 chrXII 20678 . T C 854 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.57;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:887,99,0 chrXII 20706 . T G 865 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:99:898,99,0 chrXII 20990 . C A 971 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1004,108,0 chrXII 21019 . T C 1168 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.15;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1201,138,0 chrXII 21053 . T A 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.844;QD=18.33;ReadPosRankSum=1.644;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:2,40:42:87:803,87,0 chrXII 21246 . T G 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=2.591;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.296;QD=19.83;ReadPosRankSum=2.289;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:99:945,108,0 chrXII 21252 . T C 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.374;QD=18.71;ReadPosRankSum=1.664;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:987,114,0 chrXII 21869 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1719,195,0 chrXII 21957 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.77;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2492,276,0 chrXII 21995 . A C 1973 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.68;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:2006,225,0 chrXII 22054 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.33;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1946,210,0 chrXII 22074 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.14;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1738,195,0 chrXII 22083 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.24;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1765,201,0 chrXII 22509 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=12.3097;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.58;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2088,231,0 chrXII 22572 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.18;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1982,210,0 chrXII 22902 . T A 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.641;DP=108;Dels=0.00;FS=12.445;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.015;QD=17.23;ReadPosRankSum=3.465;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:5,103:108:99:1894,210,0 chrXII 23116 . G T 2331 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.79;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2364,252,0 chrXII 23159 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.37;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1892,210,0 chrXII 23228 . A G 2539 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.27;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2572,291,0 chrXII 23598 . T C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=2.956;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.015;QD=20.08;ReadPosRankSum=2.272;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1700,189,0 chrXII 23826 . C G 1978 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.82;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2011,228,0 chrXII 23900 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9299;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.20;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1629,177,0 chrXII 23981 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5096;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=16.82;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1698,183,0 chrXII 24246 . T G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.643;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.282;QD=18.52;ReadPosRankSum=1.687;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1459,165,0 chrXII 24384 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=79;Dels=0.00;FS=7.142;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.763;QD=19.48;ReadPosRankSum=2.294;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1572,177,0 chrXII 24890 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.91;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1867,198,0 chrXII 24893 . T A 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.419;QD=18.37;ReadPosRankSum=1.659;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1797,195,0 chrXII 25014 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.43;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2354,249,0 chrXII 25143 . G A 959 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.44;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:992,108,0 chrXII 25369 . T G 1017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.680;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.364;QD=21.64;ReadPosRankSum=-1.438;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1050,120,0 chrXII 25405 . T A 1603 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.05;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1636,171,0 chrXII 25482 . T C 773 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:806,90,0 chrXII 25545 . C T 849 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.21;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:882,96,0 chrXII 25582 . T C 775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.287;QD=19.87;ReadPosRankSum=2.197;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:90:808,90,0 chrXII 25741 . C A 1837 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.2543;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.11;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1870,201,0 chrXII 25933 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1372,147,0 chrXII 26176 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.9003;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.80;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,86:91:99:1653,174,0 chrXII 26194 . C G 1417 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9334;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.17;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1450,159,0 chrXII 26245 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0090;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.69;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1452,153,0 chrXII 26293 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.15;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1611,183,0 chrXII 26922 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.93;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2021,222,0 chrXII 26965 . G T 2322 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.11;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2355,261,0 chrXII 28285 . A T 1039 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=15.74;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1072,114,0 chrXII 28293 . T C 945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.764;DP=77;Dels=0.00;FS=37.598;HaplotypeScore=14.5425;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-1.768;QD=12.27;ReadPosRankSum=4.844;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:9,68:77:99:978,111,0 chrXII 28858 . C T 2529 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.43;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2562,279,0 chrXII 28868 . G A 2508 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.56;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2541,285,0 chrXII 29023 . T C 2191 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.39;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2224,246,0 chrXII 29085 . G C 2192 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.06;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2225,252,0 chrXII 29236 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.41;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1948,213,0 chrXII 29323 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.41;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2420,273,0 chrXII 29414 . A C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=109;Dels=0.00;FS=2.977;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;MQRankSum=0.627;QD=18.03;ReadPosRankSum=2.267;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:1998,222,0 chrXII 29440 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=15.63;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,94:98:99:1565,174,0 chrXII 29448 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.66;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1534,165,0 chrXII 29612 . A G 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.033;QD=22.03;ReadPosRankSum=1.700;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2434,267,0 chrXII 29773 . C A 986 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4295;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=13.89;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1019,111,0 chrXII 29781 . T G 685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.602;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-0.472;QD=12.23;ReadPosRankSum=1.669;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:84:718,84,0 chrXII 29789 . G A 777 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=12.33;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:93:810,93,0 chrXII 30768 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.9166;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.46;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2263,249,0 chrXII 30921 . A G 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=124;Dels=0.00;FS=7.106;HaplotypeScore=10.7085;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=2.311;QD=21.74;ReadPosRankSum=2.410;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2729,300,0 chrXII 31128 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.96;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2003,219,0 chrXII 31221 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.60;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2150,240,0 chrXII 31498 . C T 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DP=64;Dels=0.00;FS=5.301;HaplotypeScore=6.1675;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.392;QD=17.75;ReadPosRankSum=0.994;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1169,103,0 chrXII 31777 . G A 978 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=23.85;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1011,111,0 chrXII 31811 . G A 596 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=20.55;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:629,69,0 chrXII 31899 . T A 711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.127;QD=17.34;ReadPosRankSum=1.648;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:744,81,0 chrXII 31962 . T C 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.127;QD=24.22;ReadPosRankSum=1.622;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1559,171,0 chrXII 32078 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=23.54;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:951,105,0 chrXII 32094 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.47;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:737,78,0 chrXII 32394 . C T 610 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=11.96;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:72:643,72,0 chrXII 32398 . G T 691 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.27;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:724,78,0 chrXII 32473 . A G 888 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.73;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:921,99,0 chrXII 32516 . C A 822 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.08;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:855,90,0 chrXII 32524 . G T 665 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.47;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:698,78,0 chrXII 32690 . T C 1448 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.94;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1481,171,0 chrXII 33027 . C G 2023 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2741;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.43;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2056,222,0 chrXII 33093 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=17.77;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1721,189,0 chrXII 33112 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.85;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1622,177,0 chrXII 33717 . G T 1694 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.29;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1727,189,0 chrXII 34011 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.31;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1461,165,0 chrXII 34343 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1934,207,0 chrXII 34786 . T C 2813 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.47;SB=-1.739e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2846,309,0 chrXII 34944 . A G 2135 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.24;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2168,243,0 chrXII 35196 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.14;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1082,123,0 chrXII 35207 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.95;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1084,114,0 chrXII 35238 . T G 1101 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=17.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1134,126,0 chrXII 35267 . T C 673 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.962;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.039;QD=14.63;ReadPosRankSum=-1.655;SB=-6.541e-03 GT:AD:DP:GQ:PL 1/1:1,44:46:56:706,56,0 chrXII 35451 . A G 158.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.189;DP=33;Dels=0.00;FS=12.175;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;MQRankSum=0.641;QD=4.79;ReadPosRankSum=-0.038;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:2,31:33:21:191,21,0 chrXII 35464 . C G 138.13 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=41.5681;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=3.07;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:18:171,18,0 chrXII 35569 . T C 980 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.693;QD=24.50;ReadPosRankSum=1.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,39:40:99:1013,111,0 chrXII 35616 . T C 869 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=25.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:99:902,99,0 chrXII 35779 . T C 1510 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=23.59;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1543,171,0 chrXII 35854 . T C 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=0.700;QD=18.87;ReadPosRankSum=1.658;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1807,201,0 chrXII 35952 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.68;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1853,195,0 chrXII 36311 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.23;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1552,168,0 chrXII 36477 . C T 1091 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.05;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1124,120,0 chrXII 36662 . G A 356 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=12.4261;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=9.13;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:42:389,42,0 chrXII 36723 . G A 241 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=9.27;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:30:274,30,0 chrXII 36833 . T G 947 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.52;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:980,108,0 chrXII 36936 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.00;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1059,111,0 chrXII 36981 . A G 875 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=15.91;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:908,102,0 chrXII 36987 . T C 846 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.67;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:879,102,0 chrXII 37123 . A C 1227 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.60;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1260,141,0 chrXII 37151 . A G 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.172;QD=20.01;ReadPosRankSum=1.681;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1394,159,0 chrXII 37196 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.25;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1823,195,0 chrXII 37375 . T A 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.506;QD=23.55;ReadPosRankSum=1.679;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1587,171,0 chrXII 37509 . T C 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.651;QD=20.79;ReadPosRankSum=1.651;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1800,204,0 chrXII 37588 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.9920;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.12;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2546,276,0 chrXII 37705 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.43;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1974,222,0 chrXII 37738 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.074;QD=21.99;ReadPosRankSum=1.628;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2254,249,0 chrXII 37831 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.45;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1362,144,0 chrXII 37834 . G T 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.49;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1426,150,0 chrXII 37937 . C T 2389 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.12;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2422,258,0 chrXII 37966 . C T 2542 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2865;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.91;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2575,273,0 chrXII 38338 . G T 2660 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.18;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2693,297,0 chrXII 38737 . T G 2502 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2535,276,0 chrXII 39312 . C G 1199 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.98;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1232,135,0 chrXII 39582 . G A 446 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.52;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:51:479,51,0 chrXII 40119 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.14;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2136,228,0 chrXII 40552 . A G 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=112;Dels=0.00;FS=2.960;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.022;QD=20.54;ReadPosRankSum=2.406;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2334,264,0 chrXII 40568 . G T 2613 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.96;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2646,282,0 chrXII 41207 . C T 683 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:78:716,78,0 chrXII 42087 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1674,183,0 chrXII 42243 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.10;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2177,249,0 chrXII 43269 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.33;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2199,243,0 chrXII 43308 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=19.37;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2261,237,0 chrXII 43316 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.940;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.397;QD=17.10;ReadPosRankSum=1.637;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1897,207,0 chrXII 43341 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.85;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1764,186,0 chrXII 43361 . C T 1211 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=15.53;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1244,135,0 chrXII 43499 . A G 2884 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.89;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2917,321,0 chrXII 44472 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.47;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1707,186,0 chrXII 44508 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=92;Dels=0.00;FS=2.966;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.263;QD=18.95;ReadPosRankSum=2.339;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:2,87:92:99:1776,201,0 chrXII 44676 . T A 1092 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.61;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1125,126,0 chrXII 44691 . G A 945 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=15.00;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:978,108,0 chrXII 44703 . C T 897 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=16.31;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:930,102,0 chrXII 44826 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=3.035;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.064;QD=20.16;ReadPosRankSum=2.253;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:1041,114,0 chrXII 45070 . A G 1779 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.52;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1812,201,0 chrXII 45294 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.57;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1694,192,0 chrXII 46290 . G T 1049 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.65;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1082,120,0 chrXII 46301 . C G 976 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.12;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1009,114,0 chrXII 46645 . A G 371 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.55;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:404,45,0 chrXII 46660 . T A 392 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.60;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:425,45,0 chrXII 46957 . A G 396 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=16.50;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:429,48,0 chrXII 46972 . A G 402 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.46;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:435,48,0 chrXII 47080 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.17;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:723,78,0 chrXII 47158 . A G 781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=4.221;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.421;QD=21.11;ReadPosRankSum=1.452;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:93:814,93,0 chrXII 47553 . T A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.169;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=75.3530;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=0.691;QD=0.51;ReadPosRankSum=-2.789;SB=-8.764e+00 GT:AD:DP:GQ:PL 1/1:40,3:43:6:53,6,0 chrXII 47602 . T C 360 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=14.40;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:393,45,0 chrXII 47603 . T C 365 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;MQRankSum=-0.485;QD=14.04;ReadPosRankSum=1.595;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,24:26:45:398,45,0 chrXII 47604 . T G 376 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=15.04;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:409,45,0 chrXII 47649 . T C 543 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.72;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:576,66,0 chrXII 47928 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4960;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=24.17;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2353,255,0 chrXII 48027 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;DP=81;Dels=0.00;FS=10.059;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=1;MQRankSum=-5.616;QD=0.15;ReadPosRankSum=-2.969;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,15:81:42:42,0,1306 chrXII 48092 . T C 2098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=96;Dels=0.00;FS=3.049;HaplotypeScore=12.8802;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.372;QD=21.85;ReadPosRankSum=2.373;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2131,240,0 chrXII 48372 . G A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.601;DP=118;Dels=0.00;FS=18.292;HaplotypeScore=17.0562;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-5.626;QD=0.81;ReadPosRankSum=0.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,24:118:99:125,0,1484 chrXII 48833 . T A 386 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.3780;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.08;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:48:419,48,0 chrXII 49074 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.54;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1286,144,0 chrXII 49301 . T G 1413 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.36;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1446,162,0 chrXII 49346 . T C 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=80;Dels=0.00;FS=3.925;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.110;QD=17.65;ReadPosRankSum=1.688;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1445,165,0 chrXII 49413 . G A 2505 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.86;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2538,270,0 chrXII 49437 . A G 2733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.404;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.678;QD=21.52;ReadPosRankSum=1.623;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2766,312,0 chrXII 49545 . T C 1808 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.31;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1841,198,0 chrXII 49638 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.41;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1666,186,0 chrXII 49831 . T A 987 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.02;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1020,111,0 chrXII 50192 . A G 3291.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=10.414;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.175;QD=23.01;ReadPosRankSum=1.708;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:3291,357,0 chrXII 50201 . G T 3022 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.28;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3055,330,0 chrXII 50256 . A G 2127 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.99;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2160,234,0 chrXII 50531 . C T 2122 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=15.95;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2155,243,0 chrXII 50774 . T A 1683 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.52;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1716,192,0 chrXII 50819 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.80;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1538,165,0 chrXII 50921 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1469,168,0 chrXII 50984 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.53;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1256,138,0 chrXII 51069 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.471;QD=20.70;ReadPosRankSum=1.699;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2227,246,0 chrXII 51125 . A G 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.134;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.408;QD=21.77;ReadPosRankSum=1.700;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2384,270,0 chrXII 51284 . G A 2469 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.24;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2502,273,0 chrXII 51489 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.78;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2070,234,0 chrXII 51952 . A G 1101 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=16.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1134,123,0 chrXII 51956 . A G 1066 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1099,120,0 chrXII 52036 . A T 1300 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=63;Dels=0.00;FS=45.989;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.758;QD=20.63;ReadPosRankSum=2.824;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1333,153,0 chrXII 52164 . C G 455 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.95;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:51:488,51,0 chrXII 52186 . T C 288 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=22.15;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:36:321,36,0 chrXII 52232 . A G 69.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=8.69;SB=-2.726e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:102,12,0 chrXII 52409 . T C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=4.037;HaplotypeScore=7.5917;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.669;QD=20.60;ReadPosRankSum=1.702;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2402,261,0 chrXII 52473 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.12;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1341,147,0 chrXII 52489 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.40;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:898,102,0 chrXII 52504 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=18.76;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:802,84,0 chrXII 52531 . G A 469 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.39;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:502,54,0 chrXII 52562 . T A 286 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=15.05;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:319,36,0 chrXII 52599 . A G 75.51 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=5.39;SB=-1.125e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:12:108,12,0 chrXII 52657 . T A 663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4435;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=1.461;QD=13.00;ReadPosRankSum=-0.442;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:75:696,75,0 chrXII 52676 . A T 960 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9391;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.55;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:993,105,0 chrXII 52701 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.56;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1402,150,0 chrXII 52714 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.06;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1578,177,0 chrXII 53053 . A G 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.401;DP=89;Dels=0.00;FS=2.649;HaplotypeScore=25.1725;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=1.005;QD=0.13;ReadPosRankSum=-4.462;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:80,9:89:41:41,0,385 chrXII 53075 . C T 96.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;DP=80;Dels=0.00;FS=2.706;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=1.022;QD=1.20;ReadPosRankSum=-4.291;SB=2.74 GT:AD:DP:GQ:PL 1/1:73,7:80:15:129,15,0 chrXII 53089 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.87;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1713,183,0 chrXII 53380 . G A 2693 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.26;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2726,288,0 chrXII 53554 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.02;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2393,261,0 chrXII 53575 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.29;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2174,240,0 chrXII 54071 . A T 3308.01 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6878;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.45;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:3308,354,0 chrXII 54226 . A G 3204.99 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.95;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3238,369,0 chrXII 54244 . T C 3562.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=0.785;QD=22.40;ReadPosRankSum=2.387;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3562,390,0 chrXII 54574 . T C 2862 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.59;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:2895,321,0 chrXII 54652 . G A 2613 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=15.6068;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.93;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,133:138:99:2646,285,0 chrXII 54901 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1973,219,0 chrXII 55033 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.28;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2245,240,0 chrXII 55090 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.99;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1670,183,0 chrXII 55378 . C G 1776 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.14;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1809,201,0 chrXII 56536 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.18;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1763,192,0 chrXII 56722 . C G 1861 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.89;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1894,213,0 chrXII 56781 . G T 1250 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.61;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1283,141,0 chrXII 57868 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.9264;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.12;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2230,237,0 chrXII 58510 . C T 1158 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.68;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1191,132,0 chrXII 59265 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.79;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2466,267,0 chrXII 60106 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1395,162,0 chrXII 60657 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.00;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1253,132,0 chrXII 60670 . C A 1219 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.32;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1252,135,0 chrXII 60852 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.92;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1518,162,0 chrXII 60873 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.01;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1459,156,0 chrXII 61099 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.77;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1757,198,0 chrXII 61294 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.18;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2003,213,0 chrXII 61318 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.35;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1933,219,0 chrXII 61503 . T C 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5249;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.029;QD=23.21;ReadPosRankSum=1.703;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2772,303,0 chrXII 61657 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.34;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2507,270,0 chrXII 61696 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.43;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1831,195,0 chrXII 61898 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.82;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1446,159,0 chrXII 61924 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.230;QD=19.81;ReadPosRankSum=1.690;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1677,189,0 chrXII 62349 . T A 1344 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.68;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1377,144,0 chrXII 62362 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.19;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1288,144,0 chrXII 63445 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.34;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1335,147,0 chrXII 63559 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.48;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1837,204,0 chrXII 63859 . C G 1167 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.88;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1200,132,0 chrXII 63912 . T G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.441;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.485;QD=23.37;ReadPosRankSum=1.670;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1342,150,0 chrXII 64089 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.09;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2322,255,0 chrXII 64152 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.77;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:969,102,0 chrXII 64164 . A G 969 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.28;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:53:99:1002,111,0 chrXII 64212 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.97;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1543,165,0 chrXII 64284 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=84;Dels=0.00;FS=7.360;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=3;MQRankSum=-1.689;QD=19.51;ReadPosRankSum=2.389;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:4,80:84:99:1672,189,0 chrXII 64307 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=3;QD=19.41;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1625,174,0 chrXII 64319 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=3;QD=16.22;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1460,162,0 chrXII 64608 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.6387;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=20.58;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2297,243,0 chrXII 64614 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=20.09;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2022,225,0 chrXII 64620 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.76;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,106:110:99:1987,219,0 chrXII 64763 . G A 3199 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.7480;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=23.35;SB=-1.606e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:3232,348,0 chrXII 64824 . A G 3032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=135;Dels=0.00;FS=8.339;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=2.304;QD=22.46;ReadPosRankSum=2.413;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:3065,348,0 chrXII 64866 . C T 2779 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2812,306,0 chrXII 65254 . G T 1800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.93;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1833,195,0 chrXII 65485 . C T 397 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=15.88;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:430,48,0 chrXII 65517 . T C 227 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=10.81;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:30:260,30,0 chrXII 65523 . A T 186.03 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=9.30;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:24:219,24,0 chrXII 65616 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=21.56;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1370,147,0 chrXII 65695 . C A 2171 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.60;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2204,240,0 chrXII 65728 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.91;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2049,231,0 chrXII 65992 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.34;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1684,180,0 chrXII 66267 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.28;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1939,219,0 chrXII 66595 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=16.90;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1655,183,0 chrXII 66714 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.24;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2502,288,0 chrXII 66854 . T G 1696 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.43;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1729,198,0 chrXII 67183 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.15;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2140,228,0 chrXII 67247 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.85;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1655,180,0 chrXII 67429 . G A 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.440;QD=20.53;ReadPosRankSum=0.939;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1737,186,0 chrXII 67604 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.11;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1663,174,0 chrXII 67726 . T C 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.936;QD=20.86;ReadPosRankSum=1.639;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1577,180,0 chrXII 67821 . C A 1409 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.57;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1442,156,0 chrXII 68071 . T C 1519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.73;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1552,177,0 chrXII 68253 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1536,162,0 chrXII 68368 . T A 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.018;QD=21.82;ReadPosRankSum=1.623;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2128,225,0 chrXII 68597 . A G 1847 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.80;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1880,207,0 chrXII 68671 . A G 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.260;QD=19.38;ReadPosRankSum=1.602;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1622,180,0 chrXII 68753 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.41;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2129,231,0 chrXII 68852 . A G 2296 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.67;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2329,264,0 chrXII 69006 . T A 1454 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.95;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1487,165,0 chrXII 69090 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.47;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1570,177,0 chrXII 70044 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.05;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1797,189,0 chrXII 70056 . C G 1565 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.09;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1598,180,0 chrXII 70065 . A C 1729 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.43;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1762,198,0 chrXII 70244 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.5692;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.18;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1990,213,0 chrXII 70306 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.89;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1658,183,0 chrXII 70524 . T G 1478 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.45;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1511,168,0 chrXII 70541 . A T 1797 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.72;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1830,204,0 chrXII 70613 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.39;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1354,144,0 chrXII 70654 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.42;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1415,162,0 chrXII 71063 . C G 1806 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=17.8404;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.63;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1839,204,0 chrXII 71524 . A G 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.843;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.426;QD=20.36;ReadPosRankSum=1.675;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1275,147,0 chrXII 71641 . C G 1649 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.17;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1682,192,0 chrXII 71722 . A G 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.182;QD=22.20;ReadPosRankSum=1.635;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2408,261,0 chrXII 72088 . C G 1699 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.47;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1732,195,0 chrXII 72448 . G A 1526 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.17;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1559,177,0 chrXII 72460 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.10;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1618,171,0 chrXII 72502 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=16.97;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1594,177,0 chrXII 72514 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=16.19;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1781,198,0 chrXII 72811 . A C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1115;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.161;QD=21.21;ReadPosRankSum=1.696;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2090,228,0 chrXII 72975 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.632;DP=85;Dels=0.00;FS=5.544;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.083;QD=15.71;ReadPosRankSum=2.870;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1368,153,0 chrXII 72987 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.82;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1637,174,0 chrXII 73171 . C T 1438 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.43;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1471,156,0 chrXII 73176 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.38;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1375,156,0 chrXII 73290 . C A 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5159;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.02;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1799,189,0 chrXII 73299 . A C 1778 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1613;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.12;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1811,201,0 chrXII 73408 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.62;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2093,240,0 chrXII 73453 . A T 2328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=106;Dels=0.00;FS=14.444;HaplotypeScore=10.3414;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.554;QD=21.96;ReadPosRankSum=2.913;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2361,258,0 chrXII 73600 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.87;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1694,192,0 chrXII 73717 . T G 2487 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.2137;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.82;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2520,276,0 chrXII 73753 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.35;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2403,258,0 chrXII 74238 . A G 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.945;QD=21.41;ReadPosRankSum=1.680;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1446,162,0 chrXII 74258 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.92;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1248,135,0 chrXII 74294 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.71;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1137,129,0 chrXII 74641 . T C 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.565;QD=21.82;ReadPosRankSum=2.802;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:99:1255,141,0 chrXII 74839 . C A 974 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1007,105,0 chrXII 74872 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.52;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1048,114,0 chrXII 75086 . A C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=0.527;QD=20.80;ReadPosRankSum=1.694;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1947,210,0 chrXII 75672 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.79;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1218,129,0 chrXII 75903 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.51;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2104,225,0 chrXII 76022 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.89;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2345,267,0 chrXII 76057 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.61;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2016,213,0 chrXII 76433 . T A 1099 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.73;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1132,123,0 chrXII 76603 . G T 1588 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.10;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1621,171,0 chrXII 76688 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.77;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1809,192,0 chrXII 76840 . T C 584 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=15.78;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:617,69,0 chrXII 76842 . G A 679 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.97;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:712,78,0 chrXII 77139 . G A 1150 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=25.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1183,126,0 chrXII 77520 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.82;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1517,162,0 chrXII 77626 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.82;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1242,135,0 chrXII 77743 . A C 1267 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.85;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1300,150,0 chrXII 77878 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.18;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1331,144,0 chrXII 78073 . A G 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.087;QD=21.66;ReadPosRankSum=1.602;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1766,195,0 chrXII 78157 . G C 1516 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.9391;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1549,174,0 chrXII 78400 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.40;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1563,177,0 chrXII 78691 . A G 1127 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.89;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1160,129,0 chrXII 78945 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.72;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1119,120,0 chrXII 78954 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.45;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1200,132,0 chrXII 79336 . G A 2793 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.16;SB=-1.755e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2826,297,0 chrXII 79411 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=15.7915;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.48;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,169:171:99:3502,390,0 chrXII 79465 . A G 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=164;Dels=0.00;FS=4.586;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.140;QD=21.65;ReadPosRankSum=1.711;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:1,160:164:99:3551,402,0 chrXII 79537 . A G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=13.2628;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.201;QD=18.77;ReadPosRankSum=1.537;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2360,273,0 chrXII 79618 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.47;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2083,231,0 chrXII 79672 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.17;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2030,216,0 chrXII 79798 . G C 3065 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=7.6502;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.58;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,164:165:99:3098,354,0 chrXII 79987 . C T 818 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.02;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:851,90,0 chrXII 80295 . T A 959 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.83;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:992,105,0 chrXII 80393 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.88;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1543,162,0 chrXII 80454 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=23.40;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:852,93,0 chrXII 80494 . C T 801 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=18.63;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:834,87,0 chrXII 80500 . A G 862 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=18.34;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:895,96,0 chrXII 80510 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=18.21;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:889,96,0 chrXII 80525 . T G 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=8.539;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-1.455;QD=15.84;ReadPosRankSum=1.663;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:825,93,0 chrXII 80532 . T C 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=8.293;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-1.155;QD=14.17;ReadPosRankSum=1.476;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:87:798,87,0 chrXII 80630 . A G 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.256;QD=21.84;ReadPosRankSum=1.675;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1365,156,0 chrXII 80695 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.87;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1105,123,0 chrXII 80723 . G A 939 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=18.78;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:972,105,0 chrXII 80746 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=15.40;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:757,84,0 chrXII 80755 . T C 564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=4.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;MQRankSum=-1.485;QD=13.43;ReadPosRankSum=1.650;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:69:597,69,0 chrXII 80794 . T A 384 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=13.71;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:417,45,0 chrXII 80805 . G A 263 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=12.52;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:296,33,0 chrXII 80818 . A G 212.01 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=9.22;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:245,27,0 chrXII 80822 . G C 233 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=10.13;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:266,30,0 chrXII 80880 . T G 480 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=20.87;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:513,57,0 chrXII 80907 . C T 631 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.03;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:664,72,0 chrXII 81004 . A G 592 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.10;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:625,69,0 chrXII 81010 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.40;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:645,69,0 chrXII 81024 . C T 460 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.69;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:493,54,0 chrXII 81061 . C T 596 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.29;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:629,69,0 chrXII 81096 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.39;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:960,102,0 chrXII 81172 . T C 515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.377;QD=22.39;ReadPosRankSum=1.583;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,22:23:60:548,60,0 chrXII 81190 . T C 449 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.63;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:482,54,0 chrXII 82033 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.606;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.464;QD=22.07;ReadPosRankSum=2.363;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1909,213,0 chrXII 82171 . A G 2145 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.83;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2178,240,0 chrXII 82255 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.58;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2132,234,0 chrXII 82288 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.64;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1767,198,0 chrXII 82321 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.48;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1455,159,0 chrXII 82618 . A G 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=95;Dels=0.00;FS=6.553;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.305;QD=21.67;ReadPosRankSum=2.397;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2092,225,0 chrXII 82757 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.44;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1898,210,0 chrXII 82792 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.07;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1433,165,0 chrXII 82798 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.26;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1593,171,0 chrXII 83008 . C G 1475 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.49;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1508,171,0 chrXII 83245 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=2.854;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.515;QD=17.35;ReadPosRankSum=2.138;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1560,174,0 chrXII 83840 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.81;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:80:99:1618,174,0 chrXII 84031 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.20;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1467,165,0 chrXII 84147 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.82;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1582,174,0 chrXII 84397 . G C 834 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.02;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:867,96,0 chrXII 84451 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=17.77;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1170,129,0 chrXII 84504 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.66;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1852,204,0 chrXII 84629 . A G 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=1.314;QD=19.95;ReadPosRankSum=1.075;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1190,113,0 chrXII 84631 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.55;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1326,144,0 chrXII 84883 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.808;QD=20.69;ReadPosRankSum=1.686;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1585,177,0 chrXII 85270 . C G 2229 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.90;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2262,261,0 chrXII 85385 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.06;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1477,159,0 chrXII 85415 . T G 1322 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.36;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1355,150,0 chrXII 85580 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.25;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1577,171,0 chrXII 85632 . T G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=115;Dels=0.00;FS=14.080;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.826;QD=16.27;ReadPosRankSum=2.936;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:3,107:115:99:1904,213,0 chrXII 85856 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.333;QD=21.55;ReadPosRankSum=1.632;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2296,258,0 chrXII 85916 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2127,240,0 chrXII 86114 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=17.1407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2472,270,0 chrXII 86166 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2071,228,0 chrXII 86701 . A G 360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.950;QD=11.25;ReadPosRankSum=1.621;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:45:393,45,0 chrXII 86722 . A T 132.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=32;Dels=0.00;FS=2.799;HaplotypeScore=16.0364;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=1.262;QD=4.13;ReadPosRankSum=1.047;SB=-8.014e+01 GT:AD:DP:GQ:PL 1/1:5,26:32:18:165,18,0 chrXII 86760 . A G 467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.000;QD=16.68;ReadPosRankSum=1.609;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,27:28:57:500,57,0 chrXII 87286 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.32;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2354,252,0 chrXII 87340 . A G 2197 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.65;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2230,243,0 chrXII 87687 . T C 2386 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.72;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2419,264,0 chrXII 87705 . A G 2335 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.68;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2368,267,0 chrXII 87825 . A G 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=105;Dels=0.00;FS=12.004;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.233;QD=21.54;ReadPosRankSum=2.933;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:3,101:105:99:2295,252,0 chrXII 88069 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.71;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1007,111,0 chrXII 88298 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1364,147,0 chrXII 88422 . A T 902 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=25.77;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:935,99,0 chrXII 88452 . G A 791 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.60;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:824,87,0 chrXII 88808 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.12;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1555,177,0 chrXII 88820 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=16.79;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1242,132,0 chrXII 89702 . A G 2295 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7123;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.13;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2328,261,0 chrXII 90038 . C T 2575 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.0207;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.76;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2608,276,0 chrXII 90143 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=16.55;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1705,183,0 chrXII 90146 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.87;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1766,189,0 chrXII 90629 . C G 1173 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.3050;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1206,132,0 chrXII 91022 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.80;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2199,243,0 chrXII 91140 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.13;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1073,114,0 chrXII 91268 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.19;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1520,165,0 chrXII 91295 . G A 1590 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.65;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1623,174,0 chrXII 91389 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:41:99:954,105,0 chrXII 91461 . A G 1231 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.039;QD=24.62;ReadPosRankSum=1.663;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1264,138,0 chrXII 91486 . T G 1290 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=22.24;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1323,144,0 chrXII 91553 . A G 469 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=13.03;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:36:57:502,57,0 chrXII 91626 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=26.07;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1206,129,0 chrXII 91644 . A G 1031 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=23.98;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1064,117,0 chrXII 91951 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.58;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1952,219,0 chrXII 91967 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=15.21;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1326,147,0 chrXII 91992 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.42;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1509,162,0 chrXII 92014 . A C 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=82;Dels=0.01;FS=4.063;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.417;QD=18.22;ReadPosRankSum=1.688;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1527,168,0 chrXII 92102 . G A 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.869;DP=125;Dels=0.00;FS=6.127;HaplotypeScore=24.5151;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=2.904;QD=22.26;ReadPosRankSum=-1.465;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:3,116:125:99:2816,273,0 chrXII 92258 . A T 2210 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.32;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2243,240,0 chrXII 92468 . A T 3038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=128;Dels=0.00;FS=4.472;HaplotypeScore=8.3211;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.275;QD=23.73;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:3071,327,0 chrXII 93019 . G A 2107 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.95;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2140,237,0 chrXII 93073 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1693,186,0 chrXII 93142 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1534,174,0 chrXII 93274 . C A 2005 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=81.8749;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.06;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2038,228,0 chrXII 93314 . A T 1298 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.31;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1331,141,0 chrXII 93341 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2599;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=15.65;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1269,141,0 chrXII 94044 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=22.74;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2102,222,0 chrXII 94172 . A G 2876 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.79;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2909,333,0 chrXII 94268 . G A 2483 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=18.7373;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2516,270,0 chrXII 94920 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=21.29;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1779,192,0 chrXII 95188 . C T 1576 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1609,174,0 chrXII 95356 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.39;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:79,9,0 chrXII 95641 . T A 856 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.41;MQ0=0;QD=26.75;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:96:889,96,0 chrXII 95935 . A G 963 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=25;QD=10.94;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:17,71:88:99:996,111,0 chrXII 95937 . C A 982 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=25;QD=11.42;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:17,69:86:99:1015,111,0 chrXII 95938 . A G 914 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=25;QD=10.63;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:17,69:86:99:947,108,0 chrXII 95944 . C T 882 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=25;QD=10.02;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:17,71:88:99:915,105,0 chrXII 95945 . T C 837 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=25;QD=9.51;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:17,71:88:99:870,102,0 chrXII 95992 . G A 442 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=22;QD=6.91;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:20,44:64:51:475,51,0 chrXII 96004 . C T 479 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=20;QD=9.21;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:20,32:52:54:512,54,0 chrXII 96010 . A G 454 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.59;MQ0=19;MQRankSum=-1.729;QD=9.08;ReadPosRankSum=2.292;SB=-9.901e+01 GT:AD:DP:GQ:PL 1/1:21,29:50:54:487,54,0 chrXII 96022 . G A 447 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=18;QD=9.72;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:18,28:46:51:480,51,0 chrXII 96025 . G A 460 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=18;QD=9.79;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:18,29:47:51:493,51,0 chrXII 96028 . G A 479 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=20;QD=9.78;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:19,29:49:54:512,54,0 chrXII 96034 . A G 481 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=20;MQRankSum=-1.135;QD=9.82;ReadPosRankSum=1.614;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:20,28:49:57:514,57,0 chrXII 96040 . A G 484 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=22;QD=9.88;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:19,29:49:57:517,57,0 chrXII 96151 . G A 823 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=9;QD=14.70;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:4,52:56:93:856,93,0 chrXII 96166 . A G 845 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=59;Dels=0.00;FS=7.243;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=5;MQRankSum=0.360;QD=14.32;ReadPosRankSum=1.667;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:4,54:59:99:878,99,0 chrXII 96169 . G A 892 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=5;QD=13.94;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:3,57:63:99:925,99,0 chrXII 96229 . A G 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=2;MQRankSum=-1.681;QD=17.20;ReadPosRankSum=1.681;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1254,141,0 chrXII 96439 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DP=69;Dels=0.00;FS=8.953;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=11.45;MQ0=46;MQRankSum=-1.921;QD=0.52;ReadPosRankSum=-0.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,31:69:66:66,0,199 chrXII 96472 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=40;Dels=0.00;FS=5.880;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.43;MQ0=26;MQRankSum=0.156;QD=3.15;ReadPosRankSum=0.000;SB=-8.676e+01 GT:AD:DP:GQ:PL 0/1:14,25:40:25:156,0,25 chrXII 96514 . A G 79.51 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=5;QD=6.12;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:112,12,0 chrXII 97099 . G A 775.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;DP=148;Dels=0.00;FS=130.777;HaplotypeScore=6.4366;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=2;MQRankSum=0.965;QD=5.24;ReadPosRankSum=-3.368;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:57,91:148:99:805,0,827 chrXII 97108 . C T 540.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;DP=141;Dels=0.00;FS=152.639;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=36.22;MQ0=2;MQRankSum=0.804;QD=3.83;ReadPosRankSum=-2.560;SB=-1.620e+02 GT:AD:DP:GQ:PL 0/1:58,82:141:99:570,0,904 chrXII 97129 . G A 535.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DP=139;Dels=0.00;FS=168.885;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=31.78;MQ0=2;MQRankSum=2.156;QD=3.85;ReadPosRankSum=-0.278;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:58,81:139:99:565,0,872 chrXII 97147 . G A 469.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.811;DP=138;Dels=0.00;FS=199.225;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=2;MQRankSum=3.347;QD=3.40;ReadPosRankSum=2.173;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:52,86:138:99:499,0,764 chrXII 97153 . G T 574.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.599;DP=131;Dels=0.00;FS=184.219;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=2;MQRankSum=2.750;QD=4.38;ReadPosRankSum=1.991;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:47,83:131:99:604,0,681 chrXII 97159 . G A 638.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;DP=130;Dels=0.00;FS=165.437;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=32.91;MQ0=2;MQRankSum=3.278;QD=4.91;ReadPosRankSum=0.962;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:42,88:130:99:668,0,570 chrXII 97171 . A G 954.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.306;DP=132;Dels=0.00;FS=156.672;HaplotypeScore=15.4246;MLEAC=1;MLEAF=0.500;MQ=36.63;MQ0=2;MQRankSum=4.240;QD=7.23;ReadPosRankSum=-1.676;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:34,96:132:99:984,0,396 chrXII 97559 . T C 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=4.446;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-1.463;QD=20.63;ReadPosRankSum=1.698;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2179,249,0 chrXII 97599 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.92;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1370,150,0 chrXII 97654 . A C 964 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.96;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:997,111,0 chrXII 97693 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.77;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:947,102,0 chrXII 97828 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.51;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1145,129,0 chrXII 98018 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.69;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2189,243,0 chrXII 98056 . T C 1574 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.85;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1607,177,0 chrXII 98471 . A G 2307 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.54;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2340,252,0 chrXII 98655 . G A 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.482;QD=20.46;ReadPosRankSum=1.231;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1772,173,0 chrXII 99254 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.15;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1485,162,0 chrXII 99276 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.10;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1553,171,0 chrXII 99619 . G T 2302 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.02;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2335,252,0 chrXII 99653 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.09;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2424,276,0 chrXII 99709 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.08;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2415,264,0 chrXII 100126 . C T 740 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=13.21;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:81:773,81,0 chrXII 100150 . C G 706 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=12.84;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:81:739,81,0 chrXII 100682 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.86;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1804,201,0 chrXII 101003 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2698;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.09;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1663,180,0 chrXII 101009 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.00;FS=4.949;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.178;QD=14.67;ReadPosRankSum=1.697;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:1544,174,0 chrXII 101321 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.66;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2038,225,0 chrXII 101330 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.26;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2005,219,0 chrXII 101399 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.51;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1767,201,0 chrXII 101723 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=16.09;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1417,162,0 chrXII 101729 . A T 1394 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=16.80;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1427,156,0 chrXII 101965 . T G 1426 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.37;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1459,165,0 chrXII 102371 . G A 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.245;HaplotypeScore=6.8325;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.687;QD=20.30;ReadPosRankSum=1.550;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1596,171,0 chrXII 102471 . T G 2031 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.38;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2064,237,0 chrXII 102860 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.90;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1413,156,0 chrXII 103352 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=19.13;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1793,198,0 chrXII 103496 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.93;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1854,210,0 chrXII 103524 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.29;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1374,144,0 chrXII 103548 . T C 1089 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.15;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1122,123,0 chrXII 103584 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=0.179;QD=17.28;ReadPosRankSum=1.673;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1035,120,0 chrXII 103650 . C A 602.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.461;DP=142;Dels=0.00;FS=42.377;HaplotypeScore=58.7567;MLEAC=1;MLEAF=0.500;MQ=41.37;MQ0=0;MQRankSum=-4.037;QD=4.24;ReadPosRankSum=-1.118;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:87,55:142:99:632,0,697 chrXII 103655 . A G 435.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.253;DP=151;Dels=0.00;FS=36.586;HaplotypeScore=36.1924;MLEAC=1;MLEAF=0.500;MQ=40.72;MQ0=0;MQRankSum=-4.856;QD=2.88;ReadPosRankSum=-0.182;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:100,51:151:99:465,0,1045 chrXII 103660 . A C 440.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.109;DP=161;Dels=0.00;FS=47.347;HaplotypeScore=41.7214;MLEAC=1;MLEAF=0.500;MQ=40.26;MQ0=0;MQRankSum=-5.324;QD=2.73;ReadPosRankSum=-0.945;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:106,55:161:99:470,0,1088 chrXII 103664 . T C 412.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010;DP=167;Dels=0.00;FS=64.791;HaplotypeScore=40.5221;MLEAC=1;MLEAF=0.500;MQ=41.14;MQ0=0;MQRankSum=-5.750;QD=2.47;ReadPosRankSum=-1.013;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:112,55:167:99:442,0,1093 chrXII 103670 . C T 662.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.948;DP=171;Dels=0.00;FS=10.599;HaplotypeScore=48.8539;MLEAC=1;MLEAF=0.500;MQ=41.29;MQ0=0;MQRankSum=-6.920;QD=3.87;ReadPosRankSum=0.228;SB=-5.320e+02 GT:AD:DP:GQ:PL 0/1:91,80:171:99:692,0,935 chrXII 103682 . C T 278.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=188;Dels=0.00;FS=71.394;HaplotypeScore=99.9313;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-5.460;QD=1.48;ReadPosRankSum=-0.200;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,55:188:99:308,0,1539 chrXII 103694 . G A 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.917;DP=203;Dels=0.00;FS=0.631;HaplotypeScore=122.2055;MLEAC=1;MLEAF=0.500;MQ=42.39;MQ0=0;MQRankSum=-1.270;QD=1.28;ReadPosRankSum=-0.320;SB=-2.490e+02 GT:AD:DP:GQ:PL 0/1:156,46:203:99:289,0,1873 chrXII 103697 . T C 531.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;DP=202;Dels=0.00;FS=6.300;HaplotypeScore=143.3435;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-6.689;QD=2.63;ReadPosRankSum=2.886;SB=-4.230e+02 GT:AD:DP:GQ:PL 0/1:125,76:202:99:561,0,1547 chrXII 103700 . A G 2912 SnpCluster AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=138.0232;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=14.56;SB=-2.054e+03 GT:AD:DP:GQ:PL 1/1:0,199:200:99:2945,324,0 chrXII 103706 . G A 190.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.366;DP=199;Dels=0.00;FS=52.157;HaplotypeScore=48.7468;MLEAC=1;MLEAF=0.500;MQ=42.94;MQ0=0;MQRankSum=-6.602;QD=0.95;ReadPosRankSum=3.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:151,47:199:99:220,0,2075 chrXII 103707 . A G 401.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.497;DP=194;Dels=0.00;FS=10.539;HaplotypeScore=44.8197;MLEAC=1;MLEAF=0.500;MQ=43.07;MQ0=0;MQRankSum=-7.377;QD=2.07;ReadPosRankSum=3.101;SB=-3.470e+02 GT:AD:DP:GQ:PL 0/1:128,66:194:99:431,0,1924 chrXII 103713 . G A 414.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=7.667;DP=180;Dels=0.00;FS=18.181;HaplotypeScore=51.6192;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=0;MQRankSum=-6.202;QD=2.30;ReadPosRankSum=1.886;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:116,63:180:99:444,0,1792 chrXII 103723 . T C 428.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;DP=150;Dels=0.00;FS=11.556;HaplotypeScore=32.7641;MLEAC=1;MLEAF=0.500;MQ=40.01;MQ0=0;MQRankSum=-4.565;QD=2.85;ReadPosRankSum=-1.506;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:92,57:150:99:458,0,1304 chrXII 103729 . G A 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.332;DP=149;Dels=0.00;FS=28.766;HaplotypeScore=29.8890;MLEAC=1;MLEAF=0.500;MQ=39.89;MQ0=0;MQRankSum=-5.028;QD=2.00;ReadPosRankSum=-1.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,47:149:99:328,0,1407 chrXII 103737 . G T 387.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.191;DP=136;Dels=0.00;FS=11.180;HaplotypeScore=14.8731;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=0;MQRankSum=-4.162;QD=2.85;ReadPosRankSum=-2.286;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:84,52:136:99:417,0,1215 chrXII 103751 . C T 169.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;DP=113;Dels=0.00;FS=4.961;HaplotypeScore=27.3887;MLEAC=1;MLEAF=0.500;MQ=39.61;MQ0=0;MQRankSum=-3.613;QD=1.50;ReadPosRankSum=0.046;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:76,37:113:99:199,0,1108 chrXII 103758 . C G 53.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.754;DP=107;Dels=0.00;FS=5.720;HaplotypeScore=45.7421;MLEAC=1;MLEAF=0.500;MQ=40.12;MQ0=0;MQRankSum=-3.359;QD=0.50;ReadPosRankSum=-2.165;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:83,23:107:83:83,0,1230 chrXII 103778 . T C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640;DP=94;Dels=0.00;FS=10.476;HaplotypeScore=63.2194;MLEAC=1;MLEAF=0.500;MQ=41.56;MQ0=0;MQRankSum=-3.387;QD=0.17;ReadPosRankSum=0.048;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:66,26:94:46:46,0,1115 chrXII 103806 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=22.85;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1130,126,0 chrXII 103858 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.94;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1352,150,0 chrXII 104406 . T G 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=85;Dels=0.00;FS=6.087;HaplotypeScore=8.6964;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.703;QD=20.36;ReadPosRankSum=2.870;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1764,198,0 chrXII 104468 . A T 2926 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.84;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2959,318,0 chrXII 105218 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.56;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,147,0 chrXII 105266 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.58;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1724,192,0 chrXII 106133 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.85;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1576,180,0 chrXII 106190 . A G 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.043;QD=18.87;ReadPosRankSum=1.646;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1543,174,0 chrXII 106406 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.57;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1370,147,0 chrXII 106427 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.9286;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.29;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1422,153,0 chrXII 106804 . G A 1335 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4618;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.54;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1368,144,0 chrXII 106805 . G A 1337 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=18.57;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1370,144,0 chrXII 106808 . A G 1162 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=3.065;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=0.608;QD=16.37;ReadPosRankSum=2.381;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1195,135,0 chrXII 106919 . T C 2301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.238;QD=20.92;ReadPosRankSum=1.669;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2334,261,0 chrXII 106937 . T C 2284 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.21;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2317,252,0 chrXII 107039 . A G 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.540;QD=20.71;ReadPosRankSum=1.695;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1959,222,0 chrXII 107151 . G T 1874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.58;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1907,210,0 chrXII 107406 . G A 2601 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.42;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2634,279,0 chrXII 107633 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.45;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2058,231,0 chrXII 108039 . T C 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=43.9938;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.833;QD=14.63;ReadPosRankSum=2.070;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:90:794,90,0 chrXII 108634 . C A 1564 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.05;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1597,171,0 chrXII 108813 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.74;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1625,177,0 chrXII 109155 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.12;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1692,186,0 chrXII 109196 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.86;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1240,138,0 chrXII 109244 . A G 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.578;DP=60;Dels=0.00;FS=14.774;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-1.018;QD=19.50;ReadPosRankSum=2.781;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1203,132,0 chrXII 109261 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.42;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1168,126,0 chrXII 109400 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.20;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1070,120,0 chrXII 109403 . A C 968 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.93;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1001,111,0 chrXII 109427 . A T 1029 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.44;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1062,117,0 chrXII 109487 . T A 1100 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=16.42;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1133,123,0 chrXII 109504 . G A 1223 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=16.53;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1256,132,0 chrXII 109508 . G A 1232 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=16.88;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1265,132,0 chrXII 109509 . T A 1219 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=16.70;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1252,132,0 chrXII 109604 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.35;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1020,111,0 chrXII 109707 . T A 972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=5.019;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-1.412;QD=18.00;ReadPosRankSum=1.540;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1005,108,0 chrXII 109729 . A C 1038 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=15.97;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1071,123,0 chrXII 109886 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=22.85;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1381,147,0 chrXII 110958 . G A 2218 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.54;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2251,240,0 chrXII 111174 . A T 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=115;Dels=0.00;FS=3.174;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.962;QD=19.20;ReadPosRankSum=1.700;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2241,246,0 chrXII 111246 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.51;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1653,174,0 chrXII 111825 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.56;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2087,225,0 chrXII 111826 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.373;QD=18.53;ReadPosRankSum=1.699;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1997,225,0 chrXII 112278 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.61;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2131,228,0 chrXII 113145 . T C 1215 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.32;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1248,141,0 chrXII 113187 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=68;Dels=0.00;FS=3.658;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.253;QD=22.62;ReadPosRankSum=1.679;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1571,171,0 chrXII 113367 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.30;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2120,225,0 chrXII 113510 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.51;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1399,156,0 chrXII 113713 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.10;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1452,159,0 chrXII 113758 . T C 1454 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.77;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1487,165,0 chrXII 113903 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=15.96;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1198,132,0 chrXII 113912 . T C 1116 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.41;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1149,129,0 chrXII 113920 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=16.43;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1101,123,0 chrXII 113989 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.89;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1498,171,0 chrXII 114107 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.04;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1175,132,0 chrXII 114118 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=15.43;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1082,120,0 chrXII 114144 . A G 1156 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=16.28;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1189,132,0 chrXII 114242 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.77;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2036,228,0 chrXII 114649 . T C 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=5.131;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.591;QD=18.99;ReadPosRankSum=1.653;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1704,186,0 chrXII 114659 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.98;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:92:99:1687,180,0 chrXII 114724 . T C 2591 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.24;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2624,294,0 chrXII 114858 . T C 1134 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.24;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1167,129,0 chrXII 115210 . A T 1003 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.07;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1036,111,0 chrXII 115852 . G T 1391 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.44;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1424,159,0 chrXII 116314 . A G 757 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.46;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:790,87,0 chrXII 116980 . G A 1566 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.08;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1599,183,0 chrXII 117391 . G C 1878 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.19;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1911,216,0 chrXII 117547 . A G 1344 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.20;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1377,156,0 chrXII 118243 . T A 3152 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3185,336,0 chrXII 118322 . A G 3117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=130;Dels=0.00;FS=5.825;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.346;QD=23.98;ReadPosRankSum=1.705;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,129:130:99:3150,345,0 chrXII 119291 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2114,234,0 chrXII 119330 . A G 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.940;DP=87;Dels=0.00;FS=2.810;HaplotypeScore=16.5623;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.694;QD=20.40;ReadPosRankSum=2.393;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1808,201,0 chrXII 120216 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=16.9280;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.34;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2417,261,0 chrXII 120550 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.95;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1921,207,0 chrXII 120592 . A G 2120 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.63;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2153,240,0 chrXII 121120 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.920;QD=19.97;ReadPosRankSum=2.402;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2110,234,0 chrXII 121206 . T G 1761 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.87;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1794,195,0 chrXII 121537 . A G 1261 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1294,141,0 chrXII 121567 . T A 1321 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1354,147,0 chrXII 121811 . T G 581 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.52;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:614,69,0 chrXII 122034 . A C 153.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=42;Dels=0.00;FS=14.886;HaplotypeScore=19.6146;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=0.326;QD=3.64;ReadPosRankSum=2.621;SB=-1.582e+02 GT:AD:DP:GQ:PL 0/1:22,20:42:99:183,0,164 chrXII 122098 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1491,162,0 chrXII 122138 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1286,141,0 chrXII 122312 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2728;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.36;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1576,177,0 chrXII 122353 . T C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.007;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.016;QD=21.44;ReadPosRankSum=2.387;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1705,189,0 chrXII 122840 . A G 2540 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=21.71;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2573,282,0 chrXII 122858 . A G 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=3.472;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.573;QD=21.17;ReadPosRankSum=1.637;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2362,255,0 chrXII 122930 . A G 2041 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.4030;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.41;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2074,231,0 chrXII 123668 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.3523;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1405,153,0 chrXII 124013 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.08;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1426,162,0 chrXII 124317 . G C 2502 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.38;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2535,279,0 chrXII 124421 . T C 1549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.2850;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.635;QD=15.34;ReadPosRankSum=1.664;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1582,177,0 chrXII 124596 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.18;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1602,174,0 chrXII 124642 . G T 1414 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=14.28;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1447,156,0 chrXII 125283 . T C 828 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:93:861,93,0 chrXII 126014 . A G 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.969;QD=20.10;ReadPosRankSum=1.674;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1239,141,0 chrXII 126061 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.32;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1640,177,0 chrXII 127219 . G A 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.047;QD=18.64;ReadPosRankSum=-0.818;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1729,192,0 chrXII 127478 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.31;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2099,231,0 chrXII 127531 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.75;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1631,186,0 chrXII 127858 . C A 2369 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.14;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2402,267,0 chrXII 128653 . T C 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=122;Dels=0.00;FS=7.482;HaplotypeScore=5.6530;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.220;QD=21.02;ReadPosRankSum=2.368;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:2,118:122:99:2597,291,0 chrXII 129090 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.72;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1380,147,0 chrXII 129103 . A T 1371 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7066;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.93;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1404,153,0 chrXII 129489 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1113,120,0 chrXII 129764 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=5.883;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.583;QD=23.39;ReadPosRankSum=1.695;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:2232,246,0 chrXII 129999 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=12.2564;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=15.92;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1450,168,0 chrXII 130083 . C T 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.472;DP=105;Dels=0.00;FS=0.951;HaplotypeScore=46.9765;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;MQRankSum=2.477;QD=8.81;ReadPosRankSum=-5.659;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:20,85:105:99:958,105,0 chrXII 130107 . G T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=114;Dels=0.00;FS=43.235;HaplotypeScore=16.7041;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=0;MQRankSum=-0.383;QD=0.12;ReadPosRankSum=-3.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,13:114:43:43,0,798 chrXII 130140 . T C 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=5.202;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.699;QD=13.86;ReadPosRankSum=1.699;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1502,165,0 chrXII 130209 . A G 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=127;Dels=0.00;FS=10.567;HaplotypeScore=3.2701;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.056;QD=15.53;ReadPosRankSum=2.913;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2005,219,0 chrXII 130212 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.77;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2004,228,0 chrXII 130729 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.78;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2110,234,0 chrXII 130739 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.23;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2241,234,0 chrXII 130807 . A G 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9765;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.335;QD=20.02;ReadPosRankSum=1.696;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1955,216,0 chrXII 130857 . C G 1113 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=14.7963;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=17.67;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1146,126,0 chrXII 130917 . C G 289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=58;Dels=0.00;FS=3.096;HaplotypeScore=18.6100;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;MQRankSum=1.529;QD=4.98;ReadPosRankSum=-0.170;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,51:58:39:322,39,0 chrXII 130976 . A G 1076 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.93;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1109,123,0 chrXII 131673 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.57;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2082,234,0 chrXII 131696 . T G 1823 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.26;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1856,210,0 chrXII 131705 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.837;QD=20.43;ReadPosRankSum=1.693;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1872,210,0 chrXII 131959 . C G 1745 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.81;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1778,201,0 chrXII 132130 . C A 1882 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=18.27;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1915,207,0 chrXII 132136 . A G 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.139;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.824;QD=16.26;ReadPosRankSum=1.665;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1708,189,0 chrXII 132144 . T A 1609 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=15.32;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1642,174,0 chrXII 132151 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=13.90;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1451,162,0 chrXII 132219 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=13.21;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1645,177,0 chrXII 132253 . G A 1075 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=114;Dels=0.04;FS=27.154;HaplotypeScore=9.5074;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=5;MQRankSum=-2.989;QD=9.43;ReadPosRankSum=0.755;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:8,102:110:99:1108,120,0 chrXII 132256 . G A 963 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.081;DP=110;Dels=0.04;FS=27.288;HaplotypeScore=9.4527;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=5;MQRankSum=-3.263;QD=8.75;ReadPosRankSum=1.540;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:8,98:106:70:996,70,0 chrXII 132260 . A G 992 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.2280;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=5;QD=9.02;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1025,114,0 chrXII 132379 . G A 2358 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.46;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2391,255,0 chrXII 132427 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.85;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2196,240,0 chrXII 132610 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.14;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1396,156,0 chrXII 132631 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.43;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1563,171,0 chrXII 132841 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.69;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,165,0 chrXII 132955 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.85;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1246,141,0 chrXII 132973 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.04;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1328,147,0 chrXII 132982 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.95;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1321,150,0 chrXII 133132 . T C 1868 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=5.492;HaplotypeScore=4.3105;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.469;QD=21.98;ReadPosRankSum=1.691;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1901,213,0 chrXII 134294 . T C 597 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.90;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:630,69,0 chrXII 134767 . A G 2719 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.66;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2752,306,0 chrXII 134932 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2181,243,0 chrXII 135031 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.28;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1948,216,0 chrXII 135067 . T G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=4.274;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.662;QD=19.18;ReadPosRankSum=1.627;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1932,213,0 chrXII 136300 . T C 869 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.98;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:902,102,0 chrXII 136527 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1767,195,0 chrXII 137383 . G T 1756 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.0590;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.16;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1789,195,0 chrXII 137707 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.19;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1156,129,0 chrXII 137945 . G T 1742 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.92;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1775,192,0 chrXII 138124 . G C 1604 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.91;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1637,183,0 chrXII 138279 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.43;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1259,138,0 chrXII 138705 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.62;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1568,177,0 chrXII 139014 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.92;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1168,135,0 chrXII 139257 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.06;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1076,123,0 chrXII 139269 . G T 883 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.62;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:916,99,0 chrXII 139321 . A T 548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.408;QD=16.12;ReadPosRankSum=1.529;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:63:581,63,0 chrXII 139322 . A T 504 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.27;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:537,60,0 chrXII 139668 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.11;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:45:99:938,105,0 chrXII 139713 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.55;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1108,117,0 chrXII 140584 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;QD=23.44;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:96:877,96,0 chrXII 140797 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.82;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1562,177,0 chrXII 140867 . C G 2401 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.01;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2434,267,0 chrXII 141078 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.62;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1875,198,0 chrXII 141390 . C T 2618 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.57;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2651,279,0 chrXII 141870 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1384,156,0 chrXII 141933 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.98;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1682,183,0 chrXII 142077 . A G 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.690;QD=20.70;ReadPosRankSum=1.607;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1751,198,0 chrXII 142324 . A C 1387 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.74;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1420,159,0 chrXII 143009 . C G 2330 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.91;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2363,264,0 chrXII 143093 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.9658;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.76;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2340,255,0 chrXII 143135 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.00;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1545,165,0 chrXII 143145 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.95;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1460,159,0 chrXII 143452 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=15.64;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1175,129,0 chrXII 143752 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1786,192,0 chrXII 144233 . G C 1546 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.18;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1579,177,0 chrXII 144379 . A G 1571 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4238;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.13;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1604,177,0 chrXII 144822 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.23;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1868,201,0 chrXII 145042 . G T 1910 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.22;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1943,213,0 chrXII 145067 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.51;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1883,201,0 chrXII 145416 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.96;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1626,174,0 chrXII 145756 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.89;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1563,174,0 chrXII 145780 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.89;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1418,159,0 chrXII 145862 . C A 1651 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.90;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1684,180,0 chrXII 145897 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1644,183,0 chrXII 146088 . C T 3052 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6612;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.34;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3085,336,0 chrXII 146111 . C A 2921 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7608;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.01;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2954,312,0 chrXII 146262 . A G 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.481;QD=20.36;ReadPosRankSum=1.684;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1499,142,0 chrXII 146307 . T A 1285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=2.698;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.462;QD=21.42;ReadPosRankSum=1.338;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1318,144,0 chrXII 146588 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.55;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1291,138,0 chrXII 147550 . G A 3394.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.3699;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.70;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,161:164:99:3394,363,0 chrXII 149413 . A G 2389 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.8928;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.42;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2422,270,0 chrXII 149893 . G A 1287 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.11;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1320,147,0 chrXII 149989 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.2137;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1692,183,0 chrXII 150225 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=21.80;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1472,171,0 chrXII 150352 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=24.04;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1788,192,0 chrXII 150435 . T A 1040 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=24.19;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1073,114,0 chrXII 150496 . C A 1378 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=20.88;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1411,150,0 chrXII 150660 . A G 492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;MQRankSum=-0.501;QD=14.06;ReadPosRankSum=2.622;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:3,32:35:60:525,60,0 chrXII 150668 . A G 407 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=15.07;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:48:440,48,0 chrXII 150816 . C T 392 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=17.04;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,22:23:45:425,45,0 chrXII 150833 . T A 311 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.65;MQ0=0;QD=20.73;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:36:344,36,0 chrXII 150858 . G T 161.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;MQRankSum=-0.348;QD=16.11;ReadPosRankSum=-1.393;SB=4.39 GT:AD:DP:GQ:PL 1/1:1,9:10:21:194,21,0 chrXII 150955 . A G 442 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.09;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:54:475,54,0 chrXII 150983 . C T 598 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=14.95;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:69:631,69,0 chrXII 151001 . G A 700 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:78:733,78,0 chrXII 151046 . T A 553 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=15.36;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:63:586,63,0 chrXII 151170 . G A 740 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=14.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:78:773,78,0 chrXII 151178 . T C 629 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=13.10;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:75:662,75,0 chrXII 151249 . C A 1214 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.90;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1247,132,0 chrXII 151308 . C T 2509 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.20;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2542,279,0 chrXII 151453 . G C 1820 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.67;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1853,201,0 chrXII 151548 . C A 1620 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.20;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1653,183,0 chrXII 151611 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.496;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.876;QD=19.07;ReadPosRankSum=1.691;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1692,195,0 chrXII 151726 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.98;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2614,276,0 chrXII 152079 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=2.622;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.785;QD=15.63;ReadPosRankSum=2.258;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1252,141,0 chrXII 152081 . A C 1231 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=15.99;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1264,144,0 chrXII 152229 . A G 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=63;Dels=0.00;FS=3.237;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.147;QD=18.83;ReadPosRankSum=1.674;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,58:63:99:1219,138,0 chrXII 152313 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.54;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1681,186,0 chrXII 152571 . T C 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.732;QD=22.18;ReadPosRankSum=1.691;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1896,210,0 chrXII 153157 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.36;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1400,156,0 chrXII 153238 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.20;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1365,144,0 chrXII 153251 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.06;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1445,153,0 chrXII 153450 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.20;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2353,270,0 chrXII 153780 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.01;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1904,213,0 chrXII 154310 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.69;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1234,138,0 chrXII 154511 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.67;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1725,186,0 chrXII 154678 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.58;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1387,150,0 chrXII 155096 . T G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=77;Dels=0.00;FS=7.059;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.087;QD=19.27;ReadPosRankSum=2.320;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1517,168,0 chrXII 155280 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.98;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2026,228,0 chrXII 156073 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.23;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1753,192,0 chrXII 156373 . A G 2731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.433;QD=21.34;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2764,312,0 chrXII 156509 . C A 1270 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.53;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1303,141,0 chrXII 156763 . A C 1167 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1200,135,0 chrXII 156825 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.50;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:850,93,0 chrXII 156924 . T G 730 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.86;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:763,87,0 chrXII 157422 . T G 870 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.5517;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.71;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:903,102,0 chrXII 157511 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.67;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:929,99,0 chrXII 157515 . T C 814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.813;QD=16.61;ReadPosRankSum=1.662;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:93:847,93,0 chrXII 157560 . T C 942 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.77;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:975,108,0 chrXII 157677 . T C 431 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.86;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:51:464,51,0 chrXII 157785 . T C 436 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.44;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:469,51,0 chrXII 157893 . C T 712 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=15.15;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:81:745,81,0 chrXII 158537 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.19;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1579,177,0 chrXII 159242 . A G 3819.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=4.988;HaplotypeScore=6.3736;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.190;QD=23.29;ReadPosRankSum=1.690;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3819,435,0 chrXII 159272 . A C 2830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=4.284;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.116;QD=23.78;ReadPosRankSum=1.615;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2863,324,0 chrXII 159350 . A G 1950 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.50;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1983,228,0 chrXII 159591 . G A 2908 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.64;SB=-1.594e+03 GT:AD:DP:GQ:PL 1/1:0,154:156:99:2941,318,0 chrXII 159671 . C G 2672 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.09;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,130:133:99:2705,306,0 chrXII 160381 . T G 2418 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.84;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2451,276,0 chrXII 160486 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1858,207,0 chrXII 160531 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1534,165,0 chrXII 160951 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.44;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1267,144,0 chrXII 161416 . C T 983 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.90;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1016,114,0 chrXII 161617 . T C 792 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.22;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:825,90,0 chrXII 162127 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.61;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1424,159,0 chrXII 162129 . A T 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.077;QD=18.20;ReadPosRankSum=2.327;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1489,159,0 chrXII 162566 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.00;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1005,108,0 chrXII 162900 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.17;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1870,201,0 chrXII 162922 . G A 1806 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.15;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1839,192,0 chrXII 163192 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.63;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2228,255,0 chrXII 163290 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.02;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2303,255,0 chrXII 163451 . A G 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.047;QD=19.78;ReadPosRankSum=1.580;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1853,210,0 chrXII 163852 . T C 1695 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.71;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1728,192,0 chrXII 164023 . A T 1566 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.34;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1599,177,0 chrXII 164111 . A G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.295;DP=88;Dels=0.00;FS=2.448;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.170;QD=18.89;ReadPosRankSum=3.295;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1695,186,0 chrXII 164123 . A C 1625 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.12;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1658,183,0 chrXII 164197 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.577;QD=20.05;ReadPosRankSum=1.643;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1597,177,0 chrXII 164250 . A G 2239 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.39;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2272,255,0 chrXII 164682 . G A 2939 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=22.96;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2972,321,0 chrXII 164733 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.62;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2323,249,0 chrXII 164734 . A G 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=132;Dels=0.00;FS=2.752;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.598;QD=16.33;ReadPosRankSum=2.412;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:2,128:132:99:2189,246,0 chrXII 164865 . G C 2279 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.10;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2312,264,0 chrXII 164910 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.361;QD=17.79;ReadPosRankSum=1.660;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1741,198,0 chrXII 164928 . A C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.269;QD=15.18;ReadPosRankSum=-0.423;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1399,159,0 chrXII 164945 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=15.53;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1524,165,0 chrXII 165084 . A G 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=3.037;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.356;QD=20.17;ReadPosRankSum=2.404;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2232,252,0 chrXII 165412 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.75;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1557,168,0 chrXII 165796 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.26;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1188,132,0 chrXII 166160 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1415,150,0 chrXII 166428 . G T 1482 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.58;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1515,168,0 chrXII 166515 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.19;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1460,156,0 chrXII 166641 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1208,129,0 chrXII 166947 . A G 2271 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2304,252,0 chrXII 167296 . C A 2005 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.89;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2038,228,0 chrXII 167521 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.98;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1851,207,0 chrXII 167640 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.44;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1382,156,0 chrXII 167685 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.43;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1545,174,0 chrXII 167737 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.35;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1417,162,0 chrXII 168034 . A G 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.477;QD=17.94;ReadPosRankSum=1.682;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1271,141,0 chrXII 168055 . A G 1344 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.33;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1377,150,0 chrXII 168081 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.33;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1395,153,0 chrXII 168099 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.36;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1601,168,0 chrXII 168149 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.34;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1212,129,0 chrXII 168169 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=14.11;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1148,126,0 chrXII 168351 . G T 2170 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.73;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2203,240,0 chrXII 168352 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.50;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2198,240,0 chrXII 168618 . C T 3221.92 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.01;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3255,348,0 chrXII 169017 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.5447;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.19;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2010,213,0 chrXII 169124 . G T 2591 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.34;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2624,282,0 chrXII 169177 . T A 2665 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4586;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.23;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2698,288,0 chrXII 169633 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.21;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:1978,210,0 chrXII 169816 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=16.90;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1368,144,0 chrXII 169985 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.03;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1316,141,0 chrXII 170000 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.34;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1174,132,0 chrXII 170342 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.27;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1777,195,0 chrXII 170350 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.57;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1677,189,0 chrXII 170369 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.84;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1679,180,0 chrXII 170451 . T G 694 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.26;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:727,81,0 chrXII 170730 . T C 229 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=11.45;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:30:262,30,0 chrXII 170741 . A G 237 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=11.29;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:30:270,30,0 chrXII 170816 . A G 329 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=16.45;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:362,39,0 chrXII 170821 . A G 318 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=14.45;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:39:351,39,0 chrXII 170859 . G A 527 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.52;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:60:560,60,0 chrXII 170932 . T A 412 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=15.85;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:51:445,51,0 chrXII 170937 . C A 384 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.00;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:417,45,0 chrXII 170963 . A G 359 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=14.36;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:392,45,0 chrXII 171013 . G A 740 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.56;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:773,87,0 chrXII 171035 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.82;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:775,81,0 chrXII 171038 . C T 689 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=19.14;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:722,75,0 chrXII 171076 . T G 740 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=15.10;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:773,87,0 chrXII 171251 . C G 1526 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.84;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1559,177,0 chrXII 171335 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.347;QD=23.25;ReadPosRankSum=1.689;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1916,216,0 chrXII 171641 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.23;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1264,141,0 chrXII 171872 . A G 395 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.17;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:48:428,48,0 chrXII 171923 . C T 404 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=16.16;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:0,24:25:51:437,51,0 chrXII 171935 . A T 670 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=19.14;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:75:703,75,0 chrXII 171952 . C T 691 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=19.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:78:724,78,0 chrXII 171967 . G A 642 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=19.45;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:72:675,72,0 chrXII 171984 . G A 605 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=20.17;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:66:638,66,0 chrXII 172080 . G A 900 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:933,102,0 chrXII 172105 . G A 1310 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1343,147,0 chrXII 172316 . A G 1070 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.88;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1103,117,0 chrXII 172462 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.60;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1475,162,0 chrXII 173020 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=5.9225;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.31;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1327,141,0 chrXII 173735 . A G 1317 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.26;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1350,153,0 chrXII 173861 . T A 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.79;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,213,0 chrXII 173892 . A T 1611 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.01;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1644,180,0 chrXII 173985 . C G 1486 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1519,168,0 chrXII 174521 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.08;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2268,243,0 chrXII 174526 . T A 2207 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.43;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2240,240,0 chrXII 174569 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.58;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2089,225,0 chrXII 174624 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.0025;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.72;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2140,228,0 chrXII 174938 . A C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-1.124;QD=21.14;ReadPosRankSum=1.685;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1597,177,0 chrXII 175138 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.57;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1540,171,0 chrXII 175158 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=17.11;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1539,171,0 chrXII 175160 . A G 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=87;Dels=0.00;FS=13.726;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-1.687;QD=16.89;ReadPosRankSum=2.826;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1502,168,0 chrXII 175187 . G A 1767 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=16.51;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1800,189,0 chrXII 175203 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=15.10;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1558,165,0 chrXII 175207 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.39;MQ0=0;QD=13.71;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1459,159,0 chrXII 175217 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2572;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=13.53;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1602,177,0 chrXII 175382 . C A 1839 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.90;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1872,207,0 chrXII 175892 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.29;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1566,168,0 chrXII 175946 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.89;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1237,135,0 chrXII 175979 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.86;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1334,150,0 chrXII 176054 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.28;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1696,192,0 chrXII 176084 . A G 1378 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.20;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1411,159,0 chrXII 176153 . C A 1090 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1123,126,0 chrXII 176285 . A T 1770 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.59;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1803,195,0 chrXII 176348 . G T 2436 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.98;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,103:106:99:2469,264,0 chrXII 176423 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.53;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1583,177,0 chrXII 176833 . T G 2726 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.12;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2759,300,0 chrXII 176939 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.87;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1936,207,0 chrXII 177042 . A G 1481 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.46;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1514,174,0 chrXII 177752 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.49;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1693,183,0 chrXII 177754 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.64;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1565,174,0 chrXII 177778 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.09;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1713,186,0 chrXII 178195 . T C 3113 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.9866;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.41;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3146,351,0 chrXII 178246 . G C 2939 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.14;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2972,321,0 chrXII 178408 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1987;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=15.78;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1501,171,0 chrXII 178531 . T A 2820 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0996;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.56;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2853,303,0 chrXII 178573 . C T 2905 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.31;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2938,330,0 chrXII 178944 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.95;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2383,261,0 chrXII 178986 . A G 1960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=15.5978;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.067;QD=18.67;ReadPosRankSum=1.699;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1993,219,0 chrXII 179029 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.38;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2316,252,0 chrXII 179034 . A G 2209 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.21;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2242,252,0 chrXII 179121 . G T 1965 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=17.86;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1998,210,0 chrXII 179135 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.87;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2142,237,0 chrXII 179159 . A G 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.250;QD=16.81;ReadPosRankSum=1.702;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,114:116:99:1983,219,0 chrXII 179190 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.70;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2144,231,0 chrXII 179265 . A G 2171 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.56;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2204,246,0 chrXII 179276 . A C 2033 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.32;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2066,228,0 chrXII 179683 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=5.6730;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.77;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1668,183,0 chrXII 179752 . A T 265.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=58;Dels=0.00;FS=2.136;HaplotypeScore=52.5409;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-0.890;QD=4.57;ReadPosRankSum=0.953;SB=-6.022e+02 GT:AD:DP:GQ:PL 1/1:5,53:58:16:298,16,0 chrXII 179754 . T A 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;DP=61;Dels=0.00;FS=2.564;HaplotypeScore=52.5409;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-1.097;QD=0.62;ReadPosRankSum=-2.052;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:46,15:61:35:68,0,35 chrXII 179807 . T A 447 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.90;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:51:480,51,0 chrXII 179815 . T A 325 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=12.04;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:39:358,39,0 chrXII 179828 . G T 436 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.17;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:469,51,0 chrXII 179876 . A T 471 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.62;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:504,54,0 chrXII 179902 . T C 544 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.43;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:577,66,0 chrXII 180683 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.84;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2426,273,0 chrXII 180796 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.06;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2139,228,0 chrXII 180860 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.22;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2197,243,0 chrXII 182021 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.00;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1419,159,0 chrXII 182119 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.80;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1364,144,0 chrXII 182125 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.10;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1299,144,0 chrXII 182230 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1640,180,0 chrXII 182260 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.11;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1951,219,0 chrXII 182506 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.524;QD=21.71;ReadPosRankSum=1.692;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1922,216,0 chrXII 182854 . G A 1106 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9015;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.80;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1139,123,0 chrXII 182881 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=15.28;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1225,135,0 chrXII 182953 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.42;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1747,186,0 chrXII 183148 . C T 2283 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.95;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2316,252,0 chrXII 183318 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.28;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1777,189,0 chrXII 183331 . T C 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.080;DP=91;Dels=0.00;FS=5.800;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-1.307;QD=15.42;ReadPosRankSum=1.262;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:3,86:91:99:1436,139,0 chrXII 183477 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.31;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1522,168,0 chrXII 183745 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7124;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.51;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2829,312,0 chrXII 183955 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.95;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1835,213,0 chrXII 184013 . A T 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.013;QD=18.00;ReadPosRankSum=1.569;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1959,210,0 chrXII 184411 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.56;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2063,222,0 chrXII 184588 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=113;Dels=0.00;FS=5.099;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.535;QD=20.06;ReadPosRankSum=1.701;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,109:113:99:2300,258,0 chrXII 185833 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.6273;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.23;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2002,225,0 chrXII 186034 . T C 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=3.044;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.539;QD=18.95;ReadPosRankSum=2.368;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2326,255,0 chrXII 186045 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.94;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2363,270,0 chrXII 186083 . C A 2298 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.53;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2331,252,0 chrXII 186651 . T A 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.3104;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.607;QD=21.35;ReadPosRankSum=1.690;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1826,204,0 chrXII 186933 . C A 2085 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.66;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2118,228,0 chrXII 187694 . C T 2526 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.52;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2559,270,0 chrXII 188098 . C G 2463 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.19;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2496,285,0 chrXII 188176 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.79;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1992,228,0 chrXII 188230 . T A 2299 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.22;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2332,249,0 chrXII 188332 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=16.51;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1354,150,0 chrXII 188360 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.90;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1453,156,0 chrXII 188851 . G A 690 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.83;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:84:723,84,0 chrXII 189328 . T C 1661 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.29;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1694,192,0 chrXII 189389 . T G 1132 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1165,129,0 chrXII 189603 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2352,261,0 chrXII 189814 . A G 1864 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7585;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.71;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1897,219,0 chrXII 189856 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.18;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2109,225,0 chrXII 190161 . G A 3015 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.50;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:3048,324,0 chrXII 190180 . C T 2903 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.60;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2936,315,0 chrXII 190285 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.08;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1954,210,0 chrXII 190353 . T C 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.076;QD=22.74;ReadPosRankSum=1.681;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:3125,351,0 chrXII 190522 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.3745;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.10;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2528,273,0 chrXII 190914 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.28;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2194,234,0 chrXII 193629 . A C 909 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.72;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:942,105,0 chrXII 193664 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.65;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1202,129,0 chrXII 193924 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=23.97;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2118,225,0 chrXII 194047 . T C 1956 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.37;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1989,225,0 chrXII 194145 . C G 1489 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.8522;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.38;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1522,168,0 chrXII 194235 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.82;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2118,237,0 chrXII 194272 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=14.75;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1803,195,0 chrXII 194277 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=16.09;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1803,201,0 chrXII 194287 . T C 1538 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=15.23;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1571,174,0 chrXII 194291 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.587;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-1.895;QD=14.56;ReadPosRankSum=2.401;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1518,171,0 chrXII 194407 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.42;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1427,159,0 chrXII 194414 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.82;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1494,162,0 chrXII 194691 . A G 1950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=99;Dels=0.00;FS=6.157;HaplotypeScore=10.3619;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.054;QD=19.70;ReadPosRankSum=0.774;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:2,96:99:99:1983,228,0 chrXII 194811 . C T 2566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=1.323;QD=23.33;ReadPosRankSum=-1.071;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2599,276,0 chrXII 195525 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.19;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1378,147,0 chrXII 196413 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=18.74;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1101,123,0 chrXII 196744 . T C 144.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.078;DP=37;Dels=0.00;FS=4.046;HaplotypeScore=17.7062;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=1.759;QD=3.89;ReadPosRankSum=2.478;SB=-2.181e+02 GT:AD:DP:GQ:PL 1/1:8,29:37:21:177,21,0 chrXII 196750 . A T 170.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=34;Dels=0.00;FS=3.873;HaplotypeScore=15.3402;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=1.022;QD=5.00;ReadPosRankSum=2.896;SB=-2.396e+02 GT:AD:DP:GQ:PL 1/1:7,27:34:21:203,21,0 chrXII 196845 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.82;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2177,237,0 chrXII 196849 . T C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-1.130;QD=20.44;ReadPosRankSum=2.931;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:3,98:102:99:2118,228,0 chrXII 196991 . T C 1014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.500;QD=22.53;ReadPosRankSum=1.655;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1047,114,0 chrXII 197186 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.58;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2304,261,0 chrXII 197459 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1794,192,0 chrXII 197801 . A C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=4.505;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=20.96;ReadPosRankSum=1.688;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1710,189,0 chrXII 198205 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.38;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1742,204,0 chrXII 198410 . A T 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.393;QD=17.99;ReadPosRankSum=1.657;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1706,189,0 chrXII 198484 . A C 1700 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=19.32;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1733,198,0 chrXII 198564 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=20.30;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1048,117,0 chrXII 198641 . C A 954 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.20;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:987,105,0 chrXII 198744 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.11;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1647,180,0 chrXII 198763 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.91;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1843,192,0 chrXII 198943 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.270;QD=21.30;ReadPosRankSum=1.675;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1311,144,0 chrXII 199043 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.78;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2111,240,0 chrXII 199528 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=84;Dels=0.00;FS=8.151;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.989;QD=21.06;ReadPosRankSum=2.359;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1802,198,0 chrXII 199567 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1744,189,0 chrXII 199705 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.78;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2080,225,0 chrXII 200350 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.772;QD=20.70;ReadPosRankSum=1.664;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2124,240,0 chrXII 200465 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.73;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1552,168,0 chrXII 200917 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8200;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.44;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1626,177,0 chrXII 201288 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.40;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1747,189,0 chrXII 201354 . T G 1279 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.09;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1312,144,0 chrXII 201654 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.89;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1307,147,0 chrXII 201658 . T G 1098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=54;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.513;QD=20.33;ReadPosRankSum=1.668;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1131,126,0 chrXII 201684 . C T 703 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.30;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:736,78,0 chrXII 201724 . C T 428 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=15.29;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:51:461,51,0 chrXII 201727 . T C 430 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.54;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:463,51,0 chrXII 201879 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.26;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1413,150,0 chrXII 202093 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.40;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1086,123,0 chrXII 202134 . C T 1007 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.98;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1040,117,0 chrXII 202261 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=23.83;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2035,219,0 chrXII 202651 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=22.35;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1575,168,0 chrXII 202775 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.18;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1475,165,0 chrXII 202861 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.26;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2001,225,0 chrXII 202872 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.08;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1918,219,0 chrXII 202888 . C T 1919 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=14.01;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,137:137:99:1952,207,0 chrXII 202895 . A G 1932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=140;Dels=0.00;FS=7.844;HaplotypeScore=5.3173;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;MQRankSum=-1.410;QD=13.80;ReadPosRankSum=1.683;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,139:140:99:1965,216,0 chrXII 202961 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=13.00;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:982,105,0 chrXII 202970 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=15.30;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:966,102,0 chrXII 202991 . T C 665 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=11.67;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:78:698,78,0 chrXII 202999 . C T 535 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=10.92;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:568,63,0 chrXII 203037 . A T 649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;MQRankSum=0.757;QD=15.83;ReadPosRankSum=1.543;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:72:682,72,0 chrXII 203202 . T C 3841.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=173;Dels=0.00;FS=8.545;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.760;QD=22.20;ReadPosRankSum=2.421;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:2,171:173:99:3841,435,0 chrXII 203251 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=8.865;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.336;QD=21.82;ReadPosRankSum=2.350;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2215,249,0 chrXII 203254 . T C 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.700;QD=21.77;ReadPosRankSum=1.695;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2079,234,0 chrXII 203484 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.63;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1598,174,0 chrXII 203513 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.93;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1875,207,0 chrXII 203607 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.3439;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.67;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1463,156,0 chrXII 203753 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=9.9419;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.19;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1224,132,0 chrXII 203834 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.37;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1273,141,0 chrXII 204055 . A T 68.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;DP=47;Dels=0.00;FS=1.328;HaplotypeScore=33.3603;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-1.208;QD=1.45;ReadPosRankSum=-2.037;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:35,12:47:98:98,0,405 chrXII 204077 . A G 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.686;QD=16.96;ReadPosRankSum=1.602;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:932,102,0 chrXII 204107 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.7557;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.22;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:870,96,0 chrXII 204563 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=3.945;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.224;QD=20.36;ReadPosRankSum=1.676;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1336,147,0 chrXII 204725 . T C 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=98;Dels=0.00;FS=13.846;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.350;QD=22.06;ReadPosRankSum=3.241;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:4,94:98:99:2195,252,0 chrXII 204809 . T A 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3304;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-0.227;QD=18.89;ReadPosRankSum=1.619;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,121:123:99:2356,264,0 chrXII 204907 . T C 1266 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=22.21;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1299,144,0 chrXII 204960 . A G 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=63;Dels=0.00;FS=10.361;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-0.694;QD=20.05;ReadPosRankSum=2.824;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1296,141,0 chrXII 204962 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=20.22;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1246,138,0 chrXII 204986 . A G 958 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.11;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:991,111,0 chrXII 205059 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.33;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1846,201,0 chrXII 205180 . G T 1826 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.85;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1859,201,0 chrXII 205188 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.22;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1763,195,0 chrXII 205227 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.65;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1357,156,0 chrXII 205266 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=64;Dels=0.00;FS=11.281;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.801;QD=18.50;ReadPosRankSum=3.677;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:5,59:64:99:1217,135,0 chrXII 205269 . T A 1129 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.64;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1162,129,0 chrXII 205361 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.012;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.542;QD=17.79;ReadPosRankSum=2.375;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1207,132,0 chrXII 205368 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.31;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1245,138,0 chrXII 205389 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=7.229;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=1.889;QD=16.31;ReadPosRankSum=2.375;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1126,126,0 chrXII 205460 . T A 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=87;Dels=0.00;FS=9.975;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.035;QD=20.40;ReadPosRankSum=2.850;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1808,192,0 chrXII 205551 . A G 1446 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.59;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1479,162,0 chrXII 205758 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.403;QD=18.79;ReadPosRankSum=1.637;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1405,156,0 chrXII 205974 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.392;QD=23.30;ReadPosRankSum=1.675;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1454,165,0 chrXII 206137 . A G 1735 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.49;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1768,201,0 chrXII 206144 . T C 1718 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.52;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1751,192,0 chrXII 206153 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.56;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1911,210,0 chrXII 206464 . T A 1891 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.70;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1924,213,0 chrXII 206874 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.43;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1490,159,0 chrXII 206894 . C A 1876 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.57;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1909,204,0 chrXII 206979 . C T 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0733;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.474;QD=19.96;ReadPosRankSum=1.290;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1989,216,0 chrXII 207072 . T C 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=4.4223;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.031;QD=20.12;ReadPosRankSum=1.688;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1643,186,0 chrXII 207453 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.83;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1463,156,0 chrXII 207525 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.83;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1332,144,0 chrXII 207537 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.81;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1293,135,0 chrXII 207564 . A G 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=2.972;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.794;QD=18.31;ReadPosRankSum=2.373;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1205,135,0 chrXII 207684 . A C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.00;FS=3.148;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=0.812;QD=21.55;ReadPosRankSum=1.678;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1434,159,0 chrXII 207798 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.70;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1856,207,0 chrXII 207885 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.97;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1351,144,0 chrXII 207990 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.47;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1141,126,0 chrXII 208218 . G T 1220 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.59;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1253,132,0 chrXII 208290 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.63;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1054,114,0 chrXII 208353 . A G 853 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.54;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:886,99,0 chrXII 208651 . G A 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.777;DP=47;Dels=0.00;FS=5.104;HaplotypeScore=34.5210;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=1.018;QD=16.19;ReadPosRankSum=-0.052;SB=-3.298e+02 GT:AD:DP:GQ:PL 1/1:5,42:47:40:794,40,0 chrXII 208751 . A G 757 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.41;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:790,87,0 chrXII 208796 . T C 640 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=14.22;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:673,75,0 chrXII 208797 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.96;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:767,87,0 chrXII 209348 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2781;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.28;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2035,216,0 chrXII 209540 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.94;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1907,219,0 chrXII 209708 . T C 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=4.191;HaplotypeScore=5.6308;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.650;QD=19.98;ReadPosRankSum=1.691;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1731,195,0 chrXII 209847 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9310;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.39;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1494,168,0 chrXII 210023 . C G 1646 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.24;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1679,186,0 chrXII 210043 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.14;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1861,198,0 chrXII 210102 . T C 2316 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.93;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2349,258,0 chrXII 210476 . A G 1871 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.68;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1904,210,0 chrXII 210527 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.23;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1054,114,0 chrXII 210539 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=15.52;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:964,108,0 chrXII 210560 . A G 902 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=15.55;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:935,102,0 chrXII 210572 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.34;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:922,99,0 chrXII 210638 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.29;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1036,117,0 chrXII 210644 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=17.90;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1107,117,0 chrXII 210791 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0121;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.18;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2024,222,0 chrXII 211019 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.59;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1458,159,0 chrXII 211028 . T A 1310 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=20.15;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1343,144,0 chrXII 211045 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.25;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:909,99,0 chrXII 211130 . A C 1599 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.61;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1632,186,0 chrXII 211190 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.91;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1367,153,0 chrXII 211217 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.90;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1366,147,0 chrXII 211226 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.16;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1359,147,0 chrXII 211678 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.63;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1776,186,0 chrXII 212026 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.9315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2160,240,0 chrXII 212081 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2119,231,0 chrXII 212683 . T C 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.3950;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.45;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1177,129,0 chrXII 212700 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.97;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1111,120,0 chrXII 212780 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=18.53;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1182,126,0 chrXII 212801 . G A 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.203;QD=19.18;ReadPosRankSum=1.684;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1452,153,0 chrXII 212823 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.82;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1042,120,0 chrXII 212873 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.93;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1528,168,0 chrXII 213037 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.064;QD=20.94;ReadPosRankSum=1.668;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1164,129,0 chrXII 213069 . C G 1194 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.95;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1227,135,0 chrXII 213226 . T C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.416;HaplotypeScore=4.1523;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-0.037;QD=21.81;ReadPosRankSum=1.659;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1058,120,0 chrXII 213278 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.74;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1336,141,0 chrXII 213307 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.33;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:915,99,0 chrXII 213308 . G T 868 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.07;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:901,99,0 chrXII 213334 . G A 882 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.96;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:915,96,0 chrXII 213413 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.57;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1284,135,0 chrXII 213421 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.74;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1207,132,0 chrXII 213497 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.17;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1155,129,0 chrXII 213608 . C G 868 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.19;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:901,102,0 chrXII 213659 . T C 874 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.00;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:907,102,0 chrXII 213996 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1399,159,0 chrXII 214228 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.46;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2072,240,0 chrXII 214283 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.72;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2163,240,0 chrXII 214310 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.839;QD=18.88;ReadPosRankSum=1.696;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1864,213,0 chrXII 214438 . A G 3613.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0452;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.585;QD=23.46;ReadPosRankSum=1.710;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3613,396,0 chrXII 214500 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=20.90;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2771,300,0 chrXII 214592 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.89;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2018,222,0 chrXII 214616 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.53;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1626,174,0 chrXII 214673 . A G 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;MQRankSum=-1.135;QD=17.54;ReadPosRankSum=1.692;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1559,171,0 chrXII 214693 . G A 1019 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=13.23;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1052,123,0 chrXII 214696 . A G 1015 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DP=87;Dels=0.00;FS=15.315;HaplotypeScore=5.9564;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;MQRankSum=-4.515;QD=11.67;ReadPosRankSum=5.204;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:11,76:87:99:1048,100,0 chrXII 214703 . T C 1669 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6215;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=16.36;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1702,189,0 chrXII 214706 . T A 1796 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.6109;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=17.61;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1829,195,0 chrXII 214730 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=20.64;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1870,198,0 chrXII 214737 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=19.33;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1908,213,0 chrXII 214840 . T C 2611 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=22.32;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2644,294,0 chrXII 214850 . T C 2092 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=20.92;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2125,243,0 chrXII 214867 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=101;Dels=0.00;FS=5.441;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;MQRankSum=-1.485;QD=20.40;ReadPosRankSum=1.697;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,97:101:99:2093,240,0 chrXII 214999 . C G 1570 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=21.22;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1603,180,0 chrXII 215008 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=21.14;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1492,165,0 chrXII 221004 . C T 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.17;MQ0=0;MQRankSum=1.589;QD=1.31;ReadPosRankSum=-1.589;SB=-3.394e-02 GT:AD:DP:GQ:PL 0/1:2,6:8:18:40,0,18 chrXII 221188 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;MQRankSum=-0.016;QD=17.52;ReadPosRankSum=1.701;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1978,225,0 chrXII 221190 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.12;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1972,216,0 chrXII 221368 . A G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.700;QD=21.45;ReadPosRankSum=1.658;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2049,231,0 chrXII 221376 . A G 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=5.691;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=2.022;QD=20.03;ReadPosRankSum=2.775;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,91:94:99:1916,213,0 chrXII 221392 . T A 2239 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.74;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2272,240,0 chrXII 221668 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.62;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1435,162,0 chrXII 222046 . C T 824 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.91;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:857,93,0 chrXII 222430 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.17;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1367,150,0 chrXII 222460 . T C 1331 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.49;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1364,153,0 chrXII 222469 . T A 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=74;Dels=0.00;FS=2.954;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-1.550;QD=18.14;ReadPosRankSum=2.317;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1375,144,0 chrXII 222534 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.61;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1706,186,0 chrXII 223100 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=16.26;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1301,144,0 chrXII 223258 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.93;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1540,171,0 chrXII 223519 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.37;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1465,159,0 chrXII 223716 . A C 1616 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;QD=17.76;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1649,180,0 chrXII 223719 . A G 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=97;Dels=0.00;FS=2.868;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-1.449;QD=15.08;ReadPosRankSum=2.398;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1496,171,0 chrXII 223732 . T A 1692 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=16.75;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1725,186,0 chrXII 223770 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=15.56;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1542,162,0 chrXII 223775 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=14.73;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1462,165,0 chrXII 223880 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.3202;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.61;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,85:92:99:1929,207,0 chrXII 223946 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.39;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1929,219,0 chrXII 224006 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8693;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.26;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1458,156,0 chrXII 224058 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.52;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1663,180,0 chrXII 224095 . A G 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-0.077;QD=19.70;ReadPosRankSum=1.694;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1845,201,0 chrXII 224139 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.23;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1625,174,0 chrXII 224193 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=15.64;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1222,129,0 chrXII 224218 . T A 1203 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=15.23;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1236,132,0 chrXII 224232 . A T 993 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=14.19;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1026,108,0 chrXII 224233 . C T 937 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=13.20;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:970,108,0 chrXII 224239 . G A 936 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=12.82;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:969,105,0 chrXII 224592 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.4841;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=20.34;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1233,132,0 chrXII 224760 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:775,81,0 chrXII 225174 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=10.537;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.358;QD=18.98;ReadPosRankSum=2.397;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1798,198,0 chrXII 225226 . T C 2511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=138;Dels=0.00;FS=3.374;HaplotypeScore=13.3214;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.682;QD=18.20;ReadPosRankSum=1.682;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2544,285,0 chrXII 225447 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.17;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1887,207,0 chrXII 225676 . G C 2099 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.09;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2132,237,0 chrXII 225755 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.10;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1618,177,0 chrXII 225795 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.29;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1615,180,0 chrXII 225831 . T G 1717 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.44;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1750,192,0 chrXII 225921 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.41;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1781,186,0 chrXII 225953 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.17;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1684,186,0 chrXII 225993 . A T 1398 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.89;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1431,153,0 chrXII 226119 . T C 1555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.210;QD=21.30;ReadPosRankSum=1.447;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1588,168,0 chrXII 226142 . G T 1195 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.57;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1228,132,0 chrXII 226242 . T C 894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.289;QD=14.90;ReadPosRankSum=1.675;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:927,105,0 chrXII 226438 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.33;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1842,204,0 chrXII 226485 . T C 1591 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6234;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.21;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1624,180,0 chrXII 226560 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.172;QD=21.36;ReadPosRankSum=2.388;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1742,198,0 chrXII 226605 . T C 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.116;QD=21.49;ReadPosRankSum=2.334;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1860,207,0 chrXII 226728 . C A 2551 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.40;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2584,276,0 chrXII 226803 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.99;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1607,171,0 chrXII 226806 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.52;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1497,165,0 chrXII 226832 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.30;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1272,141,0 chrXII 227193 . T C 610 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.94;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:72:643,72,0 chrXII 227328 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2038,216,0 chrXII 227856 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1495,168,0 chrXII 228303 . T C 1456 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.853;QD=21.41;ReadPosRankSum=1.577;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1489,165,0 chrXII 228348 . T C 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.395;QD=16.33;ReadPosRankSum=1.672;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:964,111,0 chrXII 228420 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.52;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1538,165,0 chrXII 228510 . A G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8095;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.506;QD=14.98;ReadPosRankSum=1.679;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1007,114,0 chrXII 228527 . A G 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.079;QD=15.89;ReadPosRankSum=1.667;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:96:875,96,0 chrXII 228807 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.29;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:911,96,0 chrXII 228852 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.06;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1236,132,0 chrXII 228889 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=26.17;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1551,171,0 chrXII 229120 . T G 1183 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.39;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1216,141,0 chrXII 229136 . T G 1022 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=17.32;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1055,117,0 chrXII 229160 . C T 813 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=13.78;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:90:846,90,0 chrXII 229166 . T C 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=-0.295;QD=11.94;ReadPosRankSum=2.311;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:881,99,0 chrXII 229211 . G T 1611 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.90;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1644,174,0 chrXII 229358 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6751;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.11;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1863,201,0 chrXII 229498 . A T 1826 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.75;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1859,207,0 chrXII 230005 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.15;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1517,165,0 chrXII 230014 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.32;SB=-6.001e+01 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1611,174,0 chrXII 230210 . G A 1271 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.91;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1304,138,0 chrXII 230859 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.46;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1557,165,0 chrXII 230887 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2460;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.75;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1672,180,0 chrXII 230984 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.43;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1177,129,0 chrXII 231143 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.11;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1096,120,0 chrXII 231281 . A T 1136 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=15.4310;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.46;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1169,126,0 chrXII 231457 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.22;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1009,111,0 chrXII 231463 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.83;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1081,117,0 chrXII 231692 . T C 2930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.747;QD=25.26;ReadPosRankSum=1.672;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2963,327,0 chrXII 232046 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.86;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,95:99:99:1999,225,0 chrXII 232063 . G T 2040 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.61;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2073,219,0 chrXII 232208 . C T 612 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=13.30;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:645,69,0 chrXII 232216 . G A 538 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=11.96;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:63:571,63,0 chrXII 232217 . T G 527 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;MQRankSum=-1.506;QD=11.46;ReadPosRankSum=1.657;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:63:560,63,0 chrXII 232222 . A G 489 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=52;Dels=0.00;FS=3.938;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;MQRankSum=-0.400;QD=9.40;ReadPosRankSum=1.532;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:60:522,60,0 chrXII 232250 . G C 49.97 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=0.82;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:9:82,9,0 chrXII 232561 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.85;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1388,156,0 chrXII 234378 . G C 1376 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.50;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1409,159,0 chrXII 234767 . G A 2276 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2309,246,0 chrXII 234824 . C T 2930 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.576e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2963,315,0 chrXII 235352 . C T 2713 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.40;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2746,294,0 chrXII 235514 . A G 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=122;Dels=0.00;FS=3.044;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.864;QD=19.69;ReadPosRankSum=2.389;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2435,273,0 chrXII 235709 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.77;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2110,225,0 chrXII 235798 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1555,165,0 chrXII 235891 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.51;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1694,177,0 chrXII 235940 . G C 1584 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.05;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1617,180,0 chrXII 236030 . T C 2036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.150;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.009;QD=22.37;ReadPosRankSum=1.694;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2069,234,0 chrXII 236611 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.82;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1256,138,0 chrXII 236662 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.38;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1577,168,0 chrXII 236698 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.91;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1427,156,0 chrXII 236720 . C T 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.287;QD=17.90;ReadPosRankSum=1.089;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1322,147,0 chrXII 236872 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.4489;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.29;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1566,168,0 chrXII 237225 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7469;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.41;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1564,168,0 chrXII 237728 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.962;QD=20.18;ReadPosRankSum=1.636;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1486,165,0 chrXII 237750 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.42;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1597,177,0 chrXII 237814 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.70;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1353,153,0 chrXII 237982 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.60;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,177,0 chrXII 238148 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.27;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1429,159,0 chrXII 238301 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.79;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1929,207,0 chrXII 238322 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.64;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1808,198,0 chrXII 238370 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.66;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1603,174,0 chrXII 238466 . A G 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.382;QD=19.15;ReadPosRankSum=1.687;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1527,174,0 chrXII 238667 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.08;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1825,204,0 chrXII 238919 . G C 1749 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.10;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1782,201,0 chrXII 238995 . G A 1838 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.3588;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.55;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1871,201,0 chrXII 239087 . G C 1824 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=20.49;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1857,204,0 chrXII 239186 . A G 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.986;QD=20.25;ReadPosRankSum=1.679;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1349,153,0 chrXII 239886 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.57;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1333,141,0 chrXII 239963 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.86;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1655,183,0 chrXII 240031 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.59;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1561,174,0 chrXII 240159 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1129,120,0 chrXII 240751 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.03;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2221,234,0 chrXII 240778 . G A 2044 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.65;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2077,234,0 chrXII 240793 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.60;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2258,243,0 chrXII 241422 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.70;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:971,111,0 chrXII 241943 . T A 1379 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1412,162,0 chrXII 242101 . C G 1096 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.40;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1129,126,0 chrXII 242737 . T C 2055 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.83;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2088,234,0 chrXII 242983 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.1839;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.79;SB=-1.423e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2239,240,0 chrXII 243795 . T C 596 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=24.83;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:69:629,69,0 chrXII 243850 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.75;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1320,138,0 chrXII 244405 . C A 1688 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1721,189,0 chrXII 244615 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.95;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1709,183,0 chrXII 244672 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.76;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2423,258,0 chrXII 245980 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.15;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2701,297,0 chrXII 246274 . C T 2934 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.06;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2967,324,0 chrXII 246315 . T A 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.470;QD=22.32;ReadPosRankSum=1.644;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2689,306,0 chrXII 246534 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.15;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2250,249,0 chrXII 246550 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.55;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2027,225,0 chrXII 246723 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.81;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1632,177,0 chrXII 246804 . A G 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=74;Dels=0.00;FS=5.456;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.713;QD=18.95;ReadPosRankSum=2.905;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1435,159,0 chrXII 246984 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.53;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1145,126,0 chrXII 247135 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.57;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1407,150,0 chrXII 247140 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.84;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1264,141,0 chrXII 247374 . T C 1023 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.06;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1056,120,0 chrXII 247393 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=14.94;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1064,114,0 chrXII 247449 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=14.05;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1312,147,0 chrXII 247896 . T C 1510 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=15.25;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1543,177,0 chrXII 247920 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.49;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1799,204,0 chrXII 247954 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.21;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1954,204,0 chrXII 247972 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.1014;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=16.22;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1720,192,0 chrXII 248051 . T C 2702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.676;QD=21.62;ReadPosRankSum=1.704;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2735,306,0 chrXII 248559 . G T 1935 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.74;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1968,213,0 chrXII 248615 . A G 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9048;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.995;QD=20.82;ReadPosRankSum=-0.479;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2053,222,0 chrXII 248656 . G T 1405 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.01;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1438,153,0 chrXII 248752 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=6.021;HaplotypeScore=6.8658;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.180;QD=18.90;ReadPosRankSum=1.696;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1847,213,0 chrXII 248797 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.39;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2570,273,0 chrXII 249052 . A C 2115 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.95;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2148,243,0 chrXII 249362 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.20;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1581,174,0 chrXII 249423 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.66;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2365,264,0 chrXII 249539 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2135,240,0 chrXII 249616 . T G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.276;QD=21.88;ReadPosRankSum=1.687;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1696,192,0 chrXII 249640 . C T 1781 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.13;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1814,195,0 chrXII 249685 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.84;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1638,180,0 chrXII 249743 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.5728;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=15.92;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1752,195,0 chrXII 250025 . T G 1297 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.16;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1330,147,0 chrXII 250337 . C G 1219 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.77;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1252,141,0 chrXII 250359 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.13;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1322,144,0 chrXII 250412 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.60;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1503,165,0 chrXII 250415 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.97;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1551,168,0 chrXII 250583 . T A 2122 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.95;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2155,234,0 chrXII 250588 . A G 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.756;QD=18.35;ReadPosRankSum=1.701;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2052,225,0 chrXII 250697 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.779;QD=18.46;ReadPosRankSum=1.689;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1510,171,0 chrXII 250709 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7396;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.18;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1415,156,0 chrXII 250711 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7396;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.36;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1543,165,0 chrXII 251992 . G C 1707 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0409;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=17.60;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1740,195,0 chrXII 252507 . A G 1788 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.32;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1821,204,0 chrXII 252615 . T G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=110;Dels=0.00;FS=6.133;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.769;QD=16.70;ReadPosRankSum=2.936;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:3,106:110:99:1870,213,0 chrXII 252707 . A G 3025 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.74;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,130:133:99:3058,339,0 chrXII 253977 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.54;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1994,228,0 chrXII 254321 . T C 2284 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.9347;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.58;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2317,255,0 chrXII 254442 . C T 3139 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3172,336,0 chrXII 255134 . T C 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.543;QD=17.64;ReadPosRankSum=1.629;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1250,141,0 chrXII 255227 . G C 693 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.73;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:726,81,0 chrXII 255299 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.03;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1133,126,0 chrXII 256011 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1924,213,0 chrXII 256221 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.37;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1785,198,0 chrXII 257091 . G C 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.29;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1736,198,0 chrXII 257297 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.27;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1947,210,0 chrXII 257316 . G T 1670 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.20;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1703,180,0 chrXII 257334 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.03;FS=0.000;HaplotypeScore=4.8976;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=15.67;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1396,150,0 chrXII 257504 . A G 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=3.032;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.011;QD=22.95;ReadPosRankSum=2.383;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2580,291,0 chrXII 257654 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.71;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2291,258,0 chrXII 258922 . A G 1693 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.99;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1726,192,0 chrXII 258988 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.29;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1928,210,0 chrXII 259045 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.14;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1966,216,0 chrXII 259051 . C T 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=4.642;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.157;QD=19.90;ReadPosRankSum=0.087;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2003,216,0 chrXII 259353 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.10;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1219,135,0 chrXII 259498 . C G 1656 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.20;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1689,186,0 chrXII 260496 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.76;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1673,180,0 chrXII 261023 . A C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.650;DP=82;Dels=0.02;FS=3.979;HaplotypeScore=10.6060;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.689;QD=15.82;ReadPosRankSum=1.083;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1330,150,0 chrXII 261488 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1709,192,0 chrXII 262367 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2189,240,0 chrXII 262658 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.26;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1351,141,0 chrXII 262933 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.62;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1503,165,0 chrXII 262942 . T A 1433 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.49;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1466,150,0 chrXII 263137 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.98;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1435,162,0 chrXII 263151 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.36;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1507,165,0 chrXII 263230 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8566;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.37;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1255,132,0 chrXII 264581 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.33;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1440,156,0 chrXII 264597 . C A 1423 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.04;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1456,162,0 chrXII 264903 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.77;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2105,222,0 chrXII 264939 . A G 1922 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.35;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1955,213,0 chrXII 266094 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.87;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1118,123,0 chrXII 266454 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.21;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1654,180,0 chrXII 266624 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.66;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2161,234,0 chrXII 266628 . T G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.389;DP=103;Dels=0.00;FS=4.245;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.012;QD=17.98;ReadPosRankSum=1.698;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,100:103:99:1885,210,0 chrXII 266899 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.15;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1140,126,0 chrXII 266973 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=14.43;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1317,147,0 chrXII 267016 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.37;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1743,198,0 chrXII 267613 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.50;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1624,171,0 chrXII 268023 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.75;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1784,189,0 chrXII 268253 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.94;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1854,204,0 chrXII 269037 . T A 1036 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.02;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1069,120,0 chrXII 269565 . A G 2690 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.69;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2723,306,0 chrXII 270808 . C G 1371 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.31;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1404,153,0 chrXII 270995 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.06;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1444,159,0 chrXII 271169 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.14;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1295,138,0 chrXII 271173 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.06;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1337,141,0 chrXII 271300 . A G 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=3.080;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.638;QD=20.85;ReadPosRankSum=2.368;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1284,141,0 chrXII 271759 . G A 2389 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.12;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2422,279,0 chrXII 272455 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.96;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2108,225,0 chrXII 272908 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.32;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2506,273,0 chrXII 273019 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.81;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2271,252,0 chrXII 273722 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.43;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1637,171,0 chrXII 274041 . A G 398 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:48:431,48,0 chrXII 274115 . A G 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=1.039;QD=17.28;ReadPosRankSum=1.444;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1070,117,0 chrXII 274117 . G A 909 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6899;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=14.66;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:942,111,0 chrXII 274243 . G C 1550 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1583,177,0 chrXII 274432 . T C 2368 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.13;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2401,267,0 chrXII 274580 . G C 2306 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.35;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2339,258,0 chrXII 275047 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=15.52;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:840,93,0 chrXII 275287 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.13;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2246,243,0 chrXII 276224 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.85;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2240,246,0 chrXII 276584 . C T 2433 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2466,261,0 chrXII 276795 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=18.96;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1645,174,0 chrXII 277307 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.96;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1794,204,0 chrXII 277574 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.19;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1397,153,0 chrXII 277652 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1451,156,0 chrXII 277961 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.51;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1990,216,0 chrXII 278475 . T A 1673 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=23.24;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1706,180,0 chrXII 278491 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.6360;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=17.32;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1644,183,0 chrXII 278546 . C G 1662 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.55;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1695,186,0 chrXII 278809 . C A 1532 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.58;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1565,171,0 chrXII 278845 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.67;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1728,183,0 chrXII 278861 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.16;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1560,171,0 chrXII 279986 . A G 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=106;Dels=0.00;FS=3.013;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.569;QD=20.10;ReadPosRankSum=2.380;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2164,249,0 chrXII 280109 . C G 2209 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.26;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2242,252,0 chrXII 280412 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.8139;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.96;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2490,264,0 chrXII 281178 . A C 1530 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.87;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1563,177,0 chrXII 281289 . A G 1972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.43;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2005,222,0 chrXII 281295 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.06;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1979,222,0 chrXII 281328 . C A 1934 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.80;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1967,213,0 chrXII 281655 . A G 1366 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.86;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1399,156,0 chrXII 281896 . A C 1459 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.45;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1492,168,0 chrXII 281974 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1438,162,0 chrXII 282094 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.27;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1280,138,0 chrXII 282215 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.50;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1632,174,0 chrXII 282310 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=16.44;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1266,135,0 chrXII 282385 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.56;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:946,105,0 chrXII 282620 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=14.62;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:691,78,0 chrXII 282741 . G A 834 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.38;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:867,93,0 chrXII 283638 . A T 1054 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1087,114,0 chrXII 283719 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=26.39;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2355,249,0 chrXII 283731 . G A 2325 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.22;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2358,258,0 chrXII 284270 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.149;QD=21.20;ReadPosRankSum=1.667;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2344,264,0 chrXII 284423 . T C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=3.4830;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.954;QD=18.43;ReadPosRankSum=1.693;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1673,186,0 chrXII 284424 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=3.4830;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=17.53;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1628,180,0 chrXII 284627 . A T 2312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=113;Dels=0.00;FS=3.641;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.296;QD=20.46;ReadPosRankSum=1.670;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2345,258,0 chrXII 284729 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5855;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.17;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1614,171,0 chrXII 284735 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.62;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1425,159,0 chrXII 284813 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-1.316;QD=19.69;ReadPosRankSum=1.697;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2022,228,0 chrXII 286008 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.29;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2269,243,0 chrXII 286060 . T C 1584 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.60;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1617,186,0 chrXII 286066 . C A 1571 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3202;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.26;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1604,180,0 chrXII 286333 . T C 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=123;Dels=0.00;FS=2.867;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.650;QD=19.20;ReadPosRankSum=2.410;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2394,267,0 chrXII 286350 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.44;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2465,264,0 chrXII 287615 . G C 1364 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=16.63;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1397,162,0 chrXII 287963 . C G 2227 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.96;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2260,255,0 chrXII 287996 . G T 1650 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.55;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1683,183,0 chrXII 288003 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=15.55;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1759,195,0 chrXII 288047 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0943;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.87;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1461,168,0 chrXII 288075 . T A 1509 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.58;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1542,165,0 chrXII 288156 . G C 1985 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.30;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2018,225,0 chrXII 288614 . A G 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.428;QD=20.79;ReadPosRankSum=1.702;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2403,273,0 chrXII 289291 . C T 3177 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.01;FS=0.000;HaplotypeScore=9.2409;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.80;SB=-1.802e+03 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3210,354,0 chrXII 289538 . G A 2694 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.03;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2727,291,0 chrXII 289627 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.02;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2468,273,0 chrXII 289669 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.43;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2462,261,0 chrXII 289852 . G A 2056 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.52;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2089,240,0 chrXII 289997 . A G 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.000;QD=22.60;ReadPosRankSum=1.694;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2112,237,0 chrXII 290154 . A G 2982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.606;DP=142;Dels=0.00;FS=4.928;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=1.176;QD=21.00;ReadPosRankSum=3.740;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:5,136:142:99:3015,330,0 chrXII 290328 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=69;Dels=0.00;FS=3.014;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.708;QD=17.00;ReadPosRankSum=2.377;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1206,138,0 chrXII 290334 . T C 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=3.051;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.662;QD=16.49;ReadPosRankSum=2.307;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1171,132,0 chrXII 290359 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.376;QD=16.63;ReadPosRankSum=1.681;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1164,126,0 chrXII 290367 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=16.87;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1197,126,0 chrXII 290403 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.82;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1227,135,0 chrXII 290571 . A G 1881 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.45;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1914,210,0 chrXII 291216 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=15.67;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1428,159,0 chrXII 291384 . A G 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=72;Dels=0.00;FS=2.898;HaplotypeScore=4.8447;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.828;QD=18.10;ReadPosRankSum=2.380;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1336,147,0 chrXII 291386 . A G 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=71;Dels=0.00;FS=3.002;HaplotypeScore=4.0560;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-0.573;QD=17.06;ReadPosRankSum=2.346;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1244,141,0 chrXII 291459 . T C 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=3.599;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.756;QD=15.89;ReadPosRankSum=1.683;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1177,132,0 chrXII 291461 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.19;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1288,138,0 chrXII 292010 . C A 718 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=14.36;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:84:751,84,0 chrXII 292257 . C A 805 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.17;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:93:838,93,0 chrXII 292264 . C A 862 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.52;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:895,96,0 chrXII 292618 . G C 2138 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.86;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2171,246,0 chrXII 292688 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=77;Dels=0.00;FS=5.441;HaplotypeScore=10.6100;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.642;QD=21.92;ReadPosRankSum=1.687;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1721,195,0 chrXII 292724 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.39;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1744,192,0 chrXII 293009 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1730,186,0 chrXII 293060 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1706,183,0 chrXII 293333 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.18;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1142,123,0 chrXII 293423 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1554,171,0 chrXII 293471 . A G 1136 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1169,132,0 chrXII 293839 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.09;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1695,180,0 chrXII 293882 . A G 1949 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.93;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1982,219,0 chrXII 294091 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.42;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1718,186,0 chrXII 294289 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1626,177,0 chrXII 294637 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.46;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1492,159,0 chrXII 295045 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.99;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1652,180,0 chrXII 295063 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.78;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1754,198,0 chrXII 295222 . C T 2807 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.99;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2840,300,0 chrXII 295250 . T C 2320 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.48;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2353,261,0 chrXII 295285 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=113;Dels=0.00;FS=12.160;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;MQRankSum=-0.231;QD=14.94;ReadPosRankSum=2.406;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1721,198,0 chrXII 295292 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.24;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1709,183,0 chrXII 295360 . C T 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.150;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.1367;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.236;QD=16.14;ReadPosRankSum=1.067;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2067,205,0 chrXII 296146 . G T 1137 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.87;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1170,132,0 chrXII 296209 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.52;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1210,129,0 chrXII 296228 . A G 730 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.25;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:87:763,87,0 chrXII 296236 . C A 701 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.37;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:734,78,0 chrXII 296284 . G A 478 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:511,54,0 chrXII 296357 . A G 127.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.78;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:160,18,0 chrXII 296473 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,30:32:66:599,66,0 chrXII 297011 . A T 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=3.763;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.866;QD=23.56;ReadPosRankSum=1.653;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2130,240,0 chrXII 297157 . G T 1843 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1876,198,0 chrXII 297495 . C G 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.45;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1272,147,0 chrXII 298137 . A G 1844 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.63;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1877,207,0 chrXII 298142 . T C 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=4.305;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.018;QD=18.59;ReadPosRankSum=1.696;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1855,204,0 chrXII 298416 . T G 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.58;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1325,150,0 chrXII 298586 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.35;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2061,225,0 chrXII 298644 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.06;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1676,192,0 chrXII 298872 . A G 2687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=130;Dels=0.00;FS=9.974;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.620;QD=20.67;ReadPosRankSum=2.946;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:3,127:130:99:2720,297,0 chrXII 298908 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.53;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2804,297,0 chrXII 299037 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.14;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1702,195,0 chrXII 299174 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.83;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2036,225,0 chrXII 299209 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.78;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1892,204,0 chrXII 299315 . G T 1445 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.79;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1478,159,0 chrXII 299526 . A C 956 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=15.93;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:989,111,0 chrXII 299532 . A G 869 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=14.48;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:902,99,0 chrXII 300023 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.76;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1860,198,0 chrXII 300539 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.72;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1640,183,0 chrXII 300802 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.01;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2012,216,0 chrXII 300873 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.08;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1075,117,0 chrXII 300946 . A G 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.571;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.472;QD=18.48;ReadPosRankSum=1.680;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1271,144,0 chrXII 301291 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.54;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2293,252,0 chrXII 302004 . T C 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.148;QD=18.37;ReadPosRankSum=1.693;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,88:92:99:1723,195,0 chrXII 302144 . T C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=82;Dels=0.00;FS=3.294;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.285;QD=18.76;ReadPosRankSum=1.557;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,78:82:99:1571,180,0 chrXII 302282 . T G 1712 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.24;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1745,192,0 chrXII 302332 . T A 1716 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9525;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.95;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1749,186,0 chrXII 302671 . G C 1520 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.41;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1553,168,0 chrXII 302717 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.59;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1287,138,0 chrXII 302719 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=18.58;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1222,138,0 chrXII 302764 . A T 1106 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.28;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1139,120,0 chrXII 302944 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.71;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1275,144,0 chrXII 303043 . A C 1546 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.74;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1579,174,0 chrXII 303487 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.34;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1356,147,0 chrXII 303601 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.13;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:979,102,0 chrXII 303604 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.02;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:927,99,0 chrXII 303878 . A G 1344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.448;QD=22.03;ReadPosRankSum=1.675;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1377,150,0 chrXII 304243 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.90;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2163,228,0 chrXII 304381 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.049;QD=21.41;ReadPosRankSum=1.683;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1532,171,0 chrXII 305324 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1088,117,0 chrXII 305512 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.71;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2455,261,0 chrXII 305731 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.595;QD=21.72;ReadPosRankSum=1.641;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1684,186,0 chrXII 306145 . T C 2158 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.48;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2191,243,0 chrXII 307449 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1600,177,0 chrXII 309087 . C G 1290 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.81;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1323,150,0 chrXII 310404 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.653;DP=67;Dels=0.00;FS=5.730;HaplotypeScore=8.8179;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.046;QD=18.40;ReadPosRankSum=2.895;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1266,144,0 chrXII 310755 . C A 1511 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1544,168,0 chrXII 312057 . C T 2409 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=16.4806;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.95;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2442,261,0 chrXII 312573 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.06;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1253,144,0 chrXII 313320 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1509,171,0 chrXII 313634 . T C 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0277;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.187;QD=20.19;ReadPosRankSum=1.700;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2234,246,0 chrXII 315048 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.54;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1347,153,0 chrXII 315348 . G C 1314 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.04;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1347,150,0 chrXII 315383 . T C 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=68;Dels=0.00;FS=3.074;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.094;QD=17.93;ReadPosRankSum=2.301;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:2,64:68:99:1252,144,0 chrXII 315642 . T C 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.519;QD=21.52;ReadPosRankSum=1.679;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1432,162,0 chrXII 316029 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2006,213,0 chrXII 316223 . A C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.340;QD=19.12;ReadPosRankSum=1.701;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2194,246,0 chrXII 316265 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.296;QD=20.35;ReadPosRankSum=1.704;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2556,285,0 chrXII 316490 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3077,330,0 chrXII 316628 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=103;Dels=0.00;FS=4.159;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.452;QD=18.69;ReadPosRankSum=1.697;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,98:103:99:1958,222,0 chrXII 317117 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.95;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1170,123,0 chrXII 317174 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.80;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1835,204,0 chrXII 317374 . C T 958 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=18.08;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:991,108,0 chrXII 317534 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.39;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1177,132,0 chrXII 317614 . A T 1447 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.60;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1480,159,0 chrXII 317668 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.18;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1491,162,0 chrXII 317690 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.79;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1208,135,0 chrXII 317718 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=16.51;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1701,183,0 chrXII 317762 . C T 3357.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.1886;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.87;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3357,360,0 chrXII 318306 . T C 1041 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.405;QD=21.69;ReadPosRankSum=1.585;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1074,120,0 chrXII 318348 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=3.087;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.732;QD=20.02;ReadPosRankSum=1.672;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1174,129,0 chrXII 318570 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.06;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1698,189,0 chrXII 319560 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.45;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1920,213,0 chrXII 319635 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3403;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1869,213,0 chrXII 319752 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.79;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1458,159,0 chrXII 319931 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.66;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1748,198,0 chrXII 320465 . C T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.01;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3529,378,0 chrXII 320739 . G A 2090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0540;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.629;QD=20.69;ReadPosRankSum=1.355;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2123,216,0 chrXII 321084 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2356,252,0 chrXII 321183 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.64;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2725,291,0 chrXII 321294 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1632,177,0 chrXII 321651 . G C 1305 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.39;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1338,150,0 chrXII 321772 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.19;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1495,168,0 chrXII 322042 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=14.25;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:96:874,96,0 chrXII 322198 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.85;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2235,240,0 chrXII 322494 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.580;QD=19.15;ReadPosRankSum=1.694;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1795,204,0 chrXII 322710 . G C 925 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=15.95;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:58:99:958,108,0 chrXII 322903 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.56;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1461,162,0 chrXII 323271 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.06;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1489,159,0 chrXII 323467 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.45;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2355,249,0 chrXII 323570 . T A 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.480;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.850;QD=19.67;ReadPosRankSum=-0.976;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1154,106,0 chrXII 323601 . A G 1742 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1775,195,0 chrXII 324047 . T C 2742 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.6629;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.53;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2775,315,0 chrXII 324449 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.93;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1339,150,0 chrXII 324470 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.73;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1493,159,0 chrXII 324641 . T C 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=82;Dels=0.00;FS=2.963;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.427;QD=19.05;ReadPosRankSum=2.387;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,76:82:99:1595,180,0 chrXII 324798 . T C 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.531;QD=19.20;ReadPosRankSum=1.692;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1703,186,0 chrXII 326258 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.625;QD=19.66;ReadPosRankSum=2.146;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1488,165,0 chrXII 326960 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.90;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1904,213,0 chrXII 326975 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.84;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1835,204,0 chrXII 326981 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.25;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1930,219,0 chrXII 327112 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=17.52;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1557,174,0 chrXII 327373 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.08;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1150,132,0 chrXII 327506 . C A 629 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.06;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:662,72,0 chrXII 327514 . A T 495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.060;QD=17.07;ReadPosRankSum=1.614;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:57:528,57,0 chrXII 328075 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.60;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1688,192,0 chrXII 328150 . C G 2032 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.52;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2065,231,0 chrXII 328498 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=18.24;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1310,144,0 chrXII 328525 . A G 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.024;QD=14.54;ReadPosRankSum=1.683;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1080,117,0 chrXII 328528 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=13.16;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:954,108,0 chrXII 328990 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.47;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1552,177,0 chrXII 329551 . G C 2472 SnpCluster AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.62;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2505,273,0 chrXII 329556 . A T 2321 SnpCluster AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.72;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2354,252,0 chrXII 329557 . T C 2266 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=4.248;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=0.707;QD=18.13;ReadPosRankSum=1.704;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2299,258,0 chrXII 329893 . A T 1413 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.84;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1446,156,0 chrXII 330079 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.14;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2311,261,0 chrXII 330235 . G A 1193 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.94;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1226,132,0 chrXII 330253 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.013;DP=80;Dels=0.00;FS=13.793;HaplotypeScore=11.2773;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.320;QD=17.90;ReadPosRankSum=3.300;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:4,76:80:99:1465,162,0 chrXII 330526 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.66;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1340,153,0 chrXII 330838 . G A 2012 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.40;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2045,213,0 chrXII 331075 . G C 1365 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.96;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1398,156,0 chrXII 331090 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.53;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1348,153,0 chrXII 331231 . G C 1553 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.66;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1586,180,0 chrXII 331267 . G A 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.003;QD=19.30;ReadPosRankSum=1.687;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1519,162,0 chrXII 331273 . T C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=78;Dels=0.00;FS=3.736;HaplotypeScore=6.9409;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.421;QD=16.97;ReadPosRankSum=1.066;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1357,153,0 chrXII 331399 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.35;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1047,117,0 chrXII 331671 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.23;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1307,138,0 chrXII 333217 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.68;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2028,213,0 chrXII 333360 . T C 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.68;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2301,255,0 chrXII 333672 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.12;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2577,276,0 chrXII 334170 . A G 2335 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.45;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2368,261,0 chrXII 334365 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4031;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2283,252,0 chrXII 334460 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.7923;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.19;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2131,228,0 chrXII 334864 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.76;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1922,204,0 chrXII 336189 . A G 1636 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.97;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1669,183,0 chrXII 336237 . A G 1328 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1361,156,0 chrXII 336375 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.06;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1555,168,0 chrXII 336460 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.85;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1774,186,0 chrXII 336753 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.170;QD=11.27;ReadPosRankSum=-1.030;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:867,102,0 chrXII 336867 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.44;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1453,165,0 chrXII 337270 . T A 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=68;Dels=0.00;FS=6.220;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.166;QD=20.88;ReadPosRankSum=2.376;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1453,156,0 chrXII 337533 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2000,213,0 chrXII 338853 . A G 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=6.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.733;QD=23.19;ReadPosRankSum=1.666;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1239,132,0 chrXII 338892 . A G 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=45;Dels=0.00;FS=4.771;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.116;QD=20.80;ReadPosRankSum=-1.116;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:87:969,87,0 chrXII 339582 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=15.97;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1422,147,0 chrXII 339620 . G T 1850 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.29;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,101:107:99:1883,198,0 chrXII 339733 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.80;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1050,111,0 chrXII 339987 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.03;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1523,162,0 chrXII 340119 . C T 2370 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.43;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2403,261,0 chrXII 340365 . A G 2542 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.30;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2575,285,0 chrXII 340527 . A G 1072 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=15.31;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1105,126,0 chrXII 340551 . A C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.325;DP=95;Dels=0.00;FS=9.122;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.496;QD=15.95;ReadPosRankSum=3.362;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:4,90:95:99:1548,174,0 chrXII 340584 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.58;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1721,189,0 chrXII 340602 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=15.78;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1516,171,0 chrXII 340616 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=14.54;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1240,138,0 chrXII 340695 . T C 2272 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.8801;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.84;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2305,255,0 chrXII 340821 . T C 872 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.10;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:905,102,0 chrXII 341540 . G A 3151 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.21;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3184,336,0 chrXII 341688 . T A 2687 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.9778;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.56;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2720,300,0 chrXII 341926 . T G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.304;QD=19.78;ReadPosRankSum=1.689;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1635,183,0 chrXII 341974 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1496,165,0 chrXII 342190 . A G 1005 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1038,114,0 chrXII 342271 . G T 1623 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.23;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1656,177,0 chrXII 342448 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.7713;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.61;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2271,252,0 chrXII 342508 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.85;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1800,198,0 chrXII 342533 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.17;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1889,204,0 chrXII 342709 . C G 1847 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1880,210,0 chrXII 342938 . A G 3099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=147;Dels=0.00;FS=17.517;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;MQRankSum=1.587;QD=21.08;ReadPosRankSum=3.617;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:5,142:147:99:3132,360,0 chrXII 343120 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.53;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2354,249,0 chrXII 343734 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.52;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1272,141,0 chrXII 344336 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.31;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1346,150,0 chrXII 344397 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.29;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1352,144,0 chrXII 344421 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.82;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1473,168,0 chrXII 344703 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.62;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1373,159,0 chrXII 344847 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.505;QD=21.21;ReadPosRankSum=1.667;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2303,255,0 chrXII 344859 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=20.55;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2314,249,0 chrXII 344865 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.67;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2354,258,0 chrXII 345042 . C T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=3.332;HaplotypeScore=13.1235;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.114;QD=20.05;ReadPosRankSum=0.701;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1737,183,0 chrXII 345102 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.43;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2137,240,0 chrXII 345153 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.36;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2447,264,0 chrXII 345204 . T C 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=-0.613;QD=22.22;ReadPosRankSum=1.705;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2922,324,0 chrXII 345249 . A G 2491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;MQRankSum=-0.217;QD=17.30;ReadPosRankSum=1.684;SB=-1.747e+03 GT:AD:DP:GQ:PL 1/1:1,143:144:99:2524,282,0 chrXII 345286 . T C 1447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.640;DP=121;Dels=0.00;FS=17.984;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;MQRankSum=0.892;QD=11.96;ReadPosRankSum=2.442;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:5,116:121:99:1480,162,0 chrXII 345387 . G C 2700 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.2119;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=16.98;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:2733,300,0 chrXII 345397 . T C 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=158;Dels=0.00;FS=2.618;HaplotypeScore=10.5691;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.459;QD=15.84;ReadPosRankSum=0.785;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,156:158:99:2536,259,0 chrXII 345660 . A G 2301 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.73;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2334,258,0 chrXII 345771 . T C 3313.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.2070;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.20;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:3313,372,0 chrXII 346092 . T A 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=134;Dels=0.00;FS=10.814;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.481;QD=17.46;ReadPosRankSum=2.888;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:3,131:134:99:2373,267,0 chrXII 346127 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=14.57;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1592,180,0 chrXII 346167 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=14.8444;MLEAC=2;MLEAF=1.00;MQ=40.89;MQ0=0;QD=14.23;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1214,129,0 chrXII 346177 . A G 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.01;FS=3.009;HaplotypeScore=5.5162;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.982;QD=12.20;ReadPosRankSum=2.388;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1009,111,0 chrXII 346181 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=12.01;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1006,111,0 chrXII 346204 . T C 1022 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=12.62;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1055,117,0 chrXII 346228 . T A 937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-1.377;QD=12.01;ReadPosRankSum=1.643;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:970,105,0 chrXII 346231 . T G 836 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=11.15;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:869,99,0 chrXII 346349 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.77;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1863,201,0 chrXII 346360 . A T 1777 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.95;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1810,195,0 chrXII 346407 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.34;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1995,216,0 chrXII 346449 . T G 2089 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.48;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2122,237,0 chrXII 346533 . C G 1756 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.73;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1789,195,0 chrXII 346554 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.54;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1831,204,0 chrXII 346698 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.9138;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.27;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2096,222,0 chrXII 346770 . C T 2327 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.99;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2360,249,0 chrXII 346884 . T G 1138 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.74;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1171,135,0 chrXII 347018 . T C 2532 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.21;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2565,291,0 chrXII 347086 . T C 2298 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.98;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2331,264,0 chrXII 347149 . C A 1069 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=15.27;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1102,123,0 chrXII 347156 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.31;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1240,138,0 chrXII 347194 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=13.0030;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.11;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1572,168,0 chrXII 347536 . T G 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.711;QD=17.78;ReadPosRankSum=1.643;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1420,162,0 chrXII 347880 . G A 2444 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9210;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.50;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2477,267,0 chrXII 347911 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.72;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2075,222,0 chrXII 347974 . G T 2287 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.7054;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.42;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2320,246,0 chrXII 348232 . T C 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=11.995;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.917;QD=15.49;ReadPosRankSum=2.368;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1427,162,0 chrXII 348259 . A G 1644 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.68;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1677,183,0 chrXII 348314 . A C 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.518;QD=20.35;ReadPosRankSum=1.661;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2007,228,0 chrXII 348674 . G C 392 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=14.52;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:48:425,48,0 chrXII 348730 . C T 183.03 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=10.2702;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=7.63;SB=-5.704e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:24:216,24,0 chrXII 348827 . A G 1074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.490;QD=19.53;ReadPosRankSum=1.667;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,52:55:99:1107,123,0 chrXII 348896 . G A 925 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.02;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:958,102,0 chrXII 349138 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.22;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1033,111,0 chrXII 349585 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.83;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1441,165,0 chrXII 349651 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.55;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1780,201,0 chrXII 349899 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.17;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1759,186,0 chrXII 350013 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.50;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2012,234,0 chrXII 350281 . T C 2453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.953;QD=20.27;ReadPosRankSum=1.646;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2486,270,0 chrXII 350793 . C T 2178 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3102;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.78;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2211,240,0 chrXII 350795 . G A 2204 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.97;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,136:138:99:2237,237,0 chrXII 350799 . C T 2072 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=14.29;SB=-1.763e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2105,225,0 chrXII 350896 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=10.0800;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.16;SB=-1.987e+03 GT:AD:DP:GQ:PL 1/1:0,171:172:99:3157,336,0 chrXII 351004 . A G 2672 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.21;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2705,306,0 chrXII 351127 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.14;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1781,195,0 chrXII 351375 . A G 3322.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2828;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.29;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,154:156:99:3322,366,0 chrXII 351600 . G C 2052 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.84;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2085,231,0 chrXII 351683 . A G 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.8048;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.686;QD=17.17;ReadPosRankSum=1.709;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:2626,285,0 chrXII 352017 . T C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.748;QD=22.91;ReadPosRankSum=1.647;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1889,201,0 chrXII 352244 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=6.180;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.649;QD=21.92;ReadPosRankSum=1.607;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1874,204,0 chrXII 352390 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.94;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1897,213,0 chrXII 352492 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1850,204,0 chrXII 352576 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.05;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2084,231,0 chrXII 352942 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8016;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.17;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:823,87,0 chrXII 352956 . C A 789 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.79;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:822,87,0 chrXII 353046 . G T 712 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:745,81,0 chrXII 353555 . G T 1359 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.27;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1392,144,0 chrXII 354067 . G C 1569 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.49;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1602,183,0 chrXII 354367 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.43;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1063,114,0 chrXII 354477 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.33;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1718,186,0 chrXII 354979 . A G 2233 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.79;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2266,249,0 chrXII 355027 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.19;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1940,213,0 chrXII 355082 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.43;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1565,165,0 chrXII 355221 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.80;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1510,162,0 chrXII 355321 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.22;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1811,195,0 chrXII 355552 . T C 1098 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.53;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1131,129,0 chrXII 355746 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.04;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1899,207,0 chrXII 355771 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.71;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1343,150,0 chrXII 355823 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.24;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1389,156,0 chrXII 355883 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.66;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1376,156,0 chrXII 355987 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.57;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1596,177,0 chrXII 356658 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.06;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1008,108,0 chrXII 356836 . A C 1782 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.76;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1815,201,0 chrXII 357438 . G T 2822 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.71;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2855,303,0 chrXII 357508 . C G 2220 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.87;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2253,252,0 chrXII 357529 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.21;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1610,171,0 chrXII 357535 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.74;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1526,168,0 chrXII 357577 . C T 1399 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.52;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1432,153,0 chrXII 357639 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=18.49;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1161,123,0 chrXII 357640 . A G 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=0.108;QD=17.70;ReadPosRankSum=1.516;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1166,132,0 chrXII 357688 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.38;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1667,180,0 chrXII 357723 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.45;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2139,234,0 chrXII 357940 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.29;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1289,144,0 chrXII 358302 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.33;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1590,177,0 chrXII 358369 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9838;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.98;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2510,264,0 chrXII 358692 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.96;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1847,198,0 chrXII 359014 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1265,138,0 chrXII 359226 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1023,111,0 chrXII 359296 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.88;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1612,177,0 chrXII 359469 . A G 2644 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.85;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2677,294,0 chrXII 359887 . T G 1798 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.20;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1831,201,0 chrXII 360772 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2140,240,0 chrXII 360910 . G C 2097 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.60;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2130,240,0 chrXII 360970 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.45;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2201,231,0 chrXII 361284 . T C 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.588;QD=19.94;ReadPosRankSum=1.660;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:990,105,0 chrXII 361294 . A G 937 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.12;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:970,108,0 chrXII 361865 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.55;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1753,201,0 chrXII 362782 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.22;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2211,240,0 chrXII 363207 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.82;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2010,210,0 chrXII 363562 . A T 1230 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=12.9241;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.78;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1263,138,0 chrXII 363670 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1263,138,0 chrXII 363704 . A G 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=2.814;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.674;QD=21.29;ReadPosRankSum=2.305;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1119,126,0 chrXII 363912 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.66;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1252,138,0 chrXII 364406 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.11;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1616,180,0 chrXII 364505 . A G 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.368;QD=21.58;ReadPosRankSum=1.687;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1673,189,0 chrXII 364537 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.13;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1837,210,0 chrXII 364596 . T A 2779 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8040;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.81;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2812,297,0 chrXII 365048 . T G 1805 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.23;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1838,207,0 chrXII 365052 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.62;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1742,192,0 chrXII 365170 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.73;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:2160,228,0 chrXII 365401 . A G 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.219;QD=23.04;ReadPosRankSum=0.417;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2521,288,0 chrXII 365437 . T G 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.055;QD=22.51;ReadPosRankSum=1.706;SB=-1.608e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:3027,333,0 chrXII 365591 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.59;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1933,213,0 chrXII 365615 . C A 1714 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.90;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1747,186,0 chrXII 365655 . G C 1786 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.01;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1819,204,0 chrXII 365684 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=22.54;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2039,222,0 chrXII 365722 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=18.04;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1729,189,0 chrXII 365733 . T A 1712 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=20.63;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1745,186,0 chrXII 365746 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=16.99;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1596,183,0 chrXII 365771 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=15.14;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1335,147,0 chrXII 365780 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=15.80;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1376,153,0 chrXII 365885 . G T 1447 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=16.83;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1480,165,0 chrXII 365894 . T A 1587 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.03;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1620,177,0 chrXII 365969 . C T 2539 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.27;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2572,273,0 chrXII 366072 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.09;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1942,216,0 chrXII 366118 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.591;QD=21.03;ReadPosRankSum=1.693;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1926,210,0 chrXII 366137 . T C 1826 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.75;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1859,204,0 chrXII 366201 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.51;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1750,186,0 chrXII 366226 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.63;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2138,234,0 chrXII 366378 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.70;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1964,216,0 chrXII 366500 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.27;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1330,144,0 chrXII 366649 . G T 2061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=9.1971;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.797;QD=20.61;ReadPosRankSum=1.594;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2094,219,0 chrXII 366845 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.10;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1510,162,0 chrXII 367056 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.59;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2214,237,0 chrXII 367241 . T G 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=2.949;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.199;QD=21.57;ReadPosRankSum=2.362;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1241,135,0 chrXII 367293 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.31;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1184,126,0 chrXII 367545 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.94;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1309,150,0 chrXII 367673 . A G 704 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.53;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:737,84,0 chrXII 367825 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.10;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1719,189,0 chrXII 367857 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=80;Dels=0.00;FS=5.980;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.494;QD=20.05;ReadPosRankSum=2.912;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1637,186,0 chrXII 367953 . T C 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.945;QD=20.05;ReadPosRankSum=1.680;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1356,150,0 chrXII 367964 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-1.621;QD=18.92;ReadPosRankSum=1.676;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1225,138,0 chrXII 367969 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=15.79;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:996,117,0 chrXII 368234 . T A 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.007;QD=19.02;ReadPosRankSum=1.692;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1669,177,0 chrXII 368770 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.33;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1316,147,0 chrXII 369062 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2015,213,0 chrXII 369554 . A G 467 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=8.2776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-6.532e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:57:500,57,0 chrXII 369632 . A G 178.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=14.84;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:211,24,0 chrXII 369646 . C T 235.01 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.36;SB=-2.902e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:27:268,27,0 chrXII 370090 . A G 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.5355;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.412;QD=17.44;ReadPosRankSum=1.705;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2335,261,0 chrXII 370629 . C G 996 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=8.0522;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.15;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1029,117,0 chrXII 370785 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.59;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1253,138,0 chrXII 371319 . G T 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.6697;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.866;QD=19.38;ReadPosRankSum=0.827;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1777,192,0 chrXII 371874 . T A 1921 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.58;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1954,213,0 chrXII 372252 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.01;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1497,171,0 chrXII 372265 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.80;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1676,189,0 chrXII 372303 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.24;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2138,240,0 chrXII 372524 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.31;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2509,270,0 chrXII 372738 . A G 3302.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=161;Dels=0.00;FS=3.149;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.340;QD=20.51;ReadPosRankSum=1.623;SB=-2.074e+03 GT:AD:DP:GQ:PL 1/1:1,158:161:99:3302,372,0 chrXII 373070 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.79;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1187,126,0 chrXII 373094 . T C 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DP=51;Dels=0.00;FS=10.843;HaplotypeScore=3.4584;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;MQRankSum=-0.752;QD=14.78;ReadPosRankSum=1.092;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:87:787,87,0 chrXII 373100 . G T 651 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=3.4584;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=13.85;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:72:684,72,0 chrXII 373117 . T A 612 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=14.93;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:645,69,0 chrXII 373121 . C T 606 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=15.54;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:639,69,0 chrXII 373138 . A C 638 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=0;QD=16.79;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:671,75,0 chrXII 373147 . C T 651 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.50;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:72:684,72,0 chrXII 373233 . A T 1325 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.78;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1358,150,0 chrXII 373243 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.43;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1296,138,0 chrXII 373260 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.01;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1345,150,0 chrXII 373385 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=22.75;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1489,165,0 chrXII 373453 . C G 666 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=28.6396;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=19.59;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:699,78,0 chrXII 373488 . T C 408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=34;Dels=0.00;FS=2.896;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.25;MQ0=0;MQRankSum=-0.842;QD=12.00;ReadPosRankSum=1.866;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:48:441,48,0 chrXII 373508 . A G 393 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=10.62;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:426,48,0 chrXII 373516 . T C 430 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=11.62;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:463,51,0 chrXII 373567 . C G 1615 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=19.46;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1648,186,0 chrXII 373579 . T G 1953 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=21.46;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1986,219,0 chrXII 373640 . T A 974 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=16.79;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1007,108,0 chrXII 373658 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=44.4092;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=14.96;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:87:781,87,0 chrXII 373666 . T C 210.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.128;DP=48;Dels=0.00;FS=14.703;HaplotypeScore=47.1881;MLEAC=1;MLEAF=0.500;MQ=35.74;MQ0=0;MQRankSum=1.148;QD=4.38;ReadPosRankSum=-5.928;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:22,26:48:41:240,0,41 chrXII 373806 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;MQRankSum=-1.137;QD=21.77;ReadPosRankSum=1.678;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1426,165,0 chrXII 373838 . C G 1150 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=19.17;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1183,135,0 chrXII 373842 . T C 1094 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=18.23;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1127,132,0 chrXII 373843 . A G 1081 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;QD=18.02;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1114,129,0 chrXII 373866 . G A 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;MQRankSum=0.023;QD=17.88;ReadPosRankSum=-0.300;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1374,131,0 chrXII 373988 . A C 553 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=17.84;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:586,66,0 chrXII 374445 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=19.16;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1087,120,0 chrXII 374658 . T A 1078 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=16.58;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1111,123,0 chrXII 374666 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=19.44;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1141,123,0 chrXII 374847 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.82;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1316,144,0 chrXII 374858 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.45;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1567,174,0 chrXII 374917 . C G 1229 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=16.84;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1262,144,0 chrXII 374938 . T C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=-1.567;QD=20.56;ReadPosRankSum=1.677;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1328,159,0 chrXII 374962 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=22.91;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1545,177,0 chrXII 374970 . A T 1575 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=18.75;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1608,186,0 chrXII 375009 . T C 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;MQRankSum=-1.237;QD=22.10;ReadPosRankSum=1.691;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1889,216,0 chrXII 375089 . G C 2291 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=20.83;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2324,255,0 chrXII 375099 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.26;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2363,273,0 chrXII 375126 . T C 2562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.711;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.593;QD=18.84;ReadPosRankSum=2.948;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:3,133:136:99:2595,294,0 chrXII 375154 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.97;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2829,312,0 chrXII 375275 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=16.48;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1302,141,0 chrXII 375290 . C T 724 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=12.93;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:757,84,0 chrXII 375294 . T C 542 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=10.04;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:575,69,0 chrXII 375295 . T G 512 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=9.85;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:63:545,63,0 chrXII 375302 . C T 330 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=7.86;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:363,42,0 chrXII 375309 . C T 172.03 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=5.93;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:205,24,0 chrXII 375310 . G A 146.06 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=5.04;SB=-3.591e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:179,21,0 chrXII 375329 . C T 187.03 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=4.07;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:24:220,24,0 chrXII 375385 . A C 439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.384;DP=101;Dels=0.00;FS=8.487;HaplotypeScore=79.0947;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=0;MQRankSum=0.622;QD=4.35;ReadPosRankSum=2.572;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:8,93:101:54:472,54,0 chrXII 375412 . A G 960 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.105;DP=129;Dels=0.00;FS=6.188;HaplotypeScore=6.5971;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;MQRankSum=2.473;QD=7.44;ReadPosRankSum=4.433;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:7,121:129:99:993,114,0 chrXII 375556 . T C 2141 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.74;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2174,246,0 chrXII 375574 . T G 2050 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=14.44;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,140:142:99:2083,237,0 chrXII 375724 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=20.12;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2025,216,0 chrXII 375813 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.85;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1661,177,0 chrXII 375973 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0190;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.69;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1638,177,0 chrXII 376012 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.79;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1947,210,0 chrXII 376303 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.13;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1602,180,0 chrXII 376495 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.64;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1602,174,0 chrXII 376585 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.97;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2025,219,0 chrXII 376900 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.82;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2094,237,0 chrXII 376993 . C G 3166 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.8116;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.62;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3199,363,0 chrXII 377477 . C T 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.016;DP=106;Dels=0.00;FS=3.052;HaplotypeScore=12.0349;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=1.105;QD=17.41;ReadPosRankSum=-0.247;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1878,183,0 chrXII 377512 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.08;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1534,162,0 chrXII 377522 . G T 1367 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=15.71;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1400,156,0 chrXII 377564 . T C 1249 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.64;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1282,147,0 chrXII 377594 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.62;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1373,150,0 chrXII 377619 . T G 1107 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.81;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1140,129,0 chrXII 377629 . A G 943 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=15.21;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:976,111,0 chrXII 377691 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=16.99;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1392,159,0 chrXII 377739 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.21;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1616,183,0 chrXII 377753 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.14;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1666,183,0 chrXII 377913 . C G 1726 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.39;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1759,195,0 chrXII 377948 . T A 2293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.669;QD=20.85;ReadPosRankSum=1.669;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2326,249,0 chrXII 378191 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.68;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1708,189,0 chrXII 378215 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.87;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1838,210,0 chrXII 378221 . G C 1815 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.62;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1848,201,0 chrXII 378260 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.55;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2051,231,0 chrXII 378380 . A T 2482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.459;QD=21.77;ReadPosRankSum=1.702;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2515,273,0 chrXII 378437 . A G 2189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=109;Dels=0.00;FS=9.914;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.280;QD=20.08;ReadPosRankSum=2.935;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2222,249,0 chrXII 378644 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.93;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,165,0 chrXII 378824 . T C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.378;QD=21.83;ReadPosRankSum=1.692;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1932,216,0 chrXII 379109 . G T 1317 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.90;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1350,144,0 chrXII 379113 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.03;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1384,156,0 chrXII 379144 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.41;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1487,165,0 chrXII 379232 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.3954;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.87;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2001,216,0 chrXII 379367 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.42;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1376,147,0 chrXII 379448 . T A 869 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.49;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:902,99,0 chrXII 379575 . G C 1459 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.80;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1492,162,0 chrXII 379794 . A G 1327 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.13;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1360,150,0 chrXII 379856 . A T 995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.332;QD=21.17;ReadPosRankSum=1.659;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1028,111,0 chrXII 379874 . T G 874 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.42;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:907,102,0 chrXII 380510 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.89;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2135,228,0 chrXII 381256 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.18;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2152,243,0 chrXII 381356 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=23.94;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1589,168,0 chrXII 381358 . G A 1436 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.76;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1469,162,0 chrXII 381370 . G C 1429 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.71;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1462,162,0 chrXII 381823 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.62;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1448,162,0 chrXII 383137 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.7663;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.11;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1205,129,0 chrXII 383230 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.86;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,153,0 chrXII 383295 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.84;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1429,150,0 chrXII 383407 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.11;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1179,132,0 chrXII 383499 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=2.980;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.817;QD=21.06;ReadPosRankSum=2.377;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1465,162,0 chrXII 383587 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.40;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1199,129,0 chrXII 383611 . C G 1139 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.51;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1172,129,0 chrXII 383695 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.91;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2137,237,0 chrXII 383785 . A G 2289 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.5339;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.39;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2322,264,0 chrXII 383848 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.75;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2012,222,0 chrXII 383932 . T C 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.615;QD=21.40;ReadPosRankSum=1.658;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2023,228,0 chrXII 384348 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.49;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1712,183,0 chrXII 384511 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.25;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1785,192,0 chrXII 384729 . G A 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.378;QD=21.00;ReadPosRankSum=1.063;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1902,210,0 chrXII 384821 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=7.1377;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.644;QD=21.14;ReadPosRankSum=0.811;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1703,186,0 chrXII 385590 . C G 1406 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=18.75;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1439,165,0 chrXII 385802 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.53;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1669,177,0 chrXII 385902 . T C 1368 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=17.54;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1401,159,0 chrXII 385909 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=17.51;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1469,165,0 chrXII 385938 . A G 1371 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=16.93;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1404,159,0 chrXII 385950 . C T 1248 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=15.41;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1281,144,0 chrXII 385960 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=15.05;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1207,135,0 chrXII 386133 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.87;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:948,99,0 chrXII 386151 . T C 784 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.10;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:817,93,0 chrXII 386266 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.46;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1342,147,0 chrXII 386311 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.91;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1238,135,0 chrXII 386351 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.35;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1551,165,0 chrXII 386430 . T C 389 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=12.97;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:48:422,48,0 chrXII 386522 . C T 686 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:719,78,0 chrXII 386700 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.74;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1238,141,0 chrXII 386874 . T C 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=106;Dels=0.00;FS=5.441;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.645;QD=21.46;ReadPosRankSum=2.876;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2308,255,0 chrXII 387140 . A G 2142 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.64;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2175,240,0 chrXII 387636 . C G 1092 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.90;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1125,129,0 chrXII 388456 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.59;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1130,123,0 chrXII 388634 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1596,171,0 chrXII 388801 . A G 2780 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.56;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2813,324,0 chrXII 388930 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1678,189,0 chrXII 389214 . T A 2222 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.00;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2255,249,0 chrXII 389347 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.4292;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.46;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2265,246,0 chrXII 389413 . T A 2220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.233;DP=113;Dels=0.00;FS=3.921;HaplotypeScore=10.4409;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.077;QD=19.65;ReadPosRankSum=1.077;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2253,240,0 chrXII 389584 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.68;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2418,258,0 chrXII 389602 . G C 2391 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.39;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2424,273,0 chrXII 389670 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.70;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:1901,204,0 chrXII 389674 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=15.21;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1782,201,0 chrXII 389707 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.77;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1945,213,0 chrXII 389815 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.76;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1373,156,0 chrXII 389841 . A G 942 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=12.08;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:975,108,0 chrXII 389845 . A G 867 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-0.489;QD=11.12;ReadPosRankSum=1.688;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:900,102,0 chrXII 389851 . A G 1051 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=10.023;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-1.622;QD=12.66;ReadPosRankSum=2.916;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1084,120,0 chrXII 390142 . T C 520 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=13.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:63:553,63,0 chrXII 390280 . C T 806 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=13.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:60:87:839,87,0 chrXII 390311 . A T 732 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.189;QD=15.57;ReadPosRankSum=2.343;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:84:765,84,0 chrXII 390724 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=60.3823;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.13;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1449,153,0 chrXII 390856 . T C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.267;QD=20.99;ReadPosRankSum=1.690;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1754,198,0 chrXII 390963 . G A 1702 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9281;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=16.52;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1735,186,0 chrXII 391126 . G C 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=20.29;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1656,186,0 chrXII 391139 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=23.41;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1929,201,0 chrXII 391167 . C T 2243 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=22.66;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2276,240,0 chrXII 391214 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.20;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1635,183,0 chrXII 391232 . A T 2196 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.61;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2229,240,0 chrXII 391265 . C A 1853 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9638;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.35;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1886,204,0 chrXII 391272 . T A 1841 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.79;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1874,198,0 chrXII 391324 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.53;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2455,267,0 chrXII 391414 . A C 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.642;QD=21.23;ReadPosRankSum=1.693;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1944,219,0 chrXII 391455 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.104;QD=18.75;ReadPosRankSum=1.649;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1608,186,0 chrXII 391460 . T G 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.904;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.322;QD=18.23;ReadPosRankSum=1.692;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1601,183,0 chrXII 391542 . G T 1614 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.93;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1647,174,0 chrXII 391581 . C G 1799 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.55;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1832,210,0 chrXII 391669 . G C 1663 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.05;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1696,186,0 chrXII 391675 . T C 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=3.233;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.087;QD=18.15;ReadPosRankSum=1.689;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1521,168,0 chrXII 391861 . C G 1041 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=14.07;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1074,123,0 chrXII 391936 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.20;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1565,171,0 chrXII 391960 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.89;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1214,135,0 chrXII 391967 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.48;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1082,120,0 chrXII 392012 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=16.14;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1211,132,0 chrXII 392101 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.13;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1684,180,0 chrXII 392173 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.16;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2149,234,0 chrXII 392292 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.41;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1217,132,0 chrXII 392407 . C A 825 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=12.69;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:858,93,0 chrXII 392412 . T A 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=61;Dels=0.00;FS=2.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;MQRankSum=-1.684;QD=13.30;ReadPosRankSum=2.485;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:90:844,90,0 chrXII 392424 . A G 799 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=13.32;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:93:832,93,0 chrXII 392469 . A G 716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=7.132;HaplotypeScore=4.4824;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;MQRankSum=-1.901;QD=11.37;ReadPosRankSum=2.372;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:84:749,84,0 chrXII 392474 . C T 822 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=13.48;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:855,90,0 chrXII 392482 . C T 793 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3887;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=12.59;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:87:826,87,0 chrXII 392549 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.97;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1354,147,0 chrXII 392576 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.57;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1370,147,0 chrXII 392605 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=15.96;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1118,123,0 chrXII 392619 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=16.88;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1130,126,0 chrXII 392647 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.09;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1372,147,0 chrXII 392702 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0987;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.34;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1477,156,0 chrXII 393184 . G C 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9100;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.74;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,222,0 chrXII 393452 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.59;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2070,216,0 chrXII 393632 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.07;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1644,183,0 chrXII 393979 . G T 811 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=15.60;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:844,93,0 chrXII 394165 . C A 1859 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.46;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1892,201,0 chrXII 394237 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.47;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1622,177,0 chrXII 394281 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.07;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2199,240,0 chrXII 394534 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.35;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1549,165,0 chrXII 394740 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.43;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:723,81,0 chrXII 395771 . T G 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=6.075;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=21.30;ReadPosRankSum=1.689;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1758,195,0 chrXII 395850 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.33;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2147,228,0 chrXII 396529 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:796,90,0 chrXII 396641 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.28;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1312,147,0 chrXII 396805 . G A 1021 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.91;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1054,117,0 chrXII 396982 . C A 1786 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.05;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1819,201,0 chrXII 397180 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.43;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2095,240,0 chrXII 397246 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2020,213,0 chrXII 397306 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0139;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.03;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1796,207,0 chrXII 397756 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.74;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1270,144,0 chrXII 397759 . A G 1168 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=17.43;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1201,135,0 chrXII 398325 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.490;QD=18.69;ReadPosRankSum=2.349;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1416,159,0 chrXII 398481 . T C 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=13.655;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.316;QD=20.67;ReadPosRankSum=2.879;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:99:1232,141,0 chrXII 398693 . T C 2376 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.9852;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.75;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2409,267,0 chrXII 398871 . T G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=75;Dels=0.00;FS=3.041;HaplotypeScore=8.7133;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.317;QD=19.13;ReadPosRankSum=2.350;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1468,162,0 chrXII 399251 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.09;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1615,171,0 chrXII 399343 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.38;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1643,183,0 chrXII 399414 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.51;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1899,207,0 chrXII 399563 . G C 1769 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.39;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1802,198,0 chrXII 399612 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.27;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1837,210,0 chrXII 399634 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.48;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1902,201,0 chrXII 399687 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.60;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1696,180,0 chrXII 400709 . T A 1659 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.04;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1692,192,0 chrXII 401097 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.37;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1764,189,0 chrXII 401532 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.75;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1534,171,0 chrXII 401664 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.65;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1397,150,0 chrXII 402030 . G T 1632 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.67;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1665,177,0 chrXII 402036 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.90;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1496,159,0 chrXII 402496 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.59;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1682,189,0 chrXII 402712 . G A 1280 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.07;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1313,138,0 chrXII 402998 . A G 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.873;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.443;QD=21.47;ReadPosRankSum=1.692;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1879,213,0 chrXII 403049 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.14;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1593,180,0 chrXII 403061 . A C 1549 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.21;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1582,180,0 chrXII 403089 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.084;QD=16.82;ReadPosRankSum=1.563;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1412,162,0 chrXII 403319 . G A 2364 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.38;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2397,267,0 chrXII 403476 . C T 1201 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.07;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1234,129,0 chrXII 403898 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.85;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1655,174,0 chrXII 404007 . C T 1770 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.58;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1803,192,0 chrXII 404056 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.28;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1635,180,0 chrXII 404233 . A T 971 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.98;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1004,108,0 chrXII 405138 . C A 1722 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.2691;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.26;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1755,189,0 chrXII 405208 . A C 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.470;QD=19.92;ReadPosRankSum=1.615;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2384,267,0 chrXII 405334 . C G 1973 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.4669;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.46;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2006,225,0 chrXII 405433 . A C 1642 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.81;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1675,183,0 chrXII 405458 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.92;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1121,126,0 chrXII 405942 . C G 1524 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1557,177,0 chrXII 406528 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1407,150,0 chrXII 406565 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.25;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1924,210,0 chrXII 406757 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.94;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1414,150,0 chrXII 407016 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.86;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1782,192,0 chrXII 407388 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.73;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1488,162,0 chrXII 407405 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2941;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.48;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1753,195,0 chrXII 407445 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.46;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1649,186,0 chrXII 407477 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.92;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1539,171,0 chrXII 407639 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.71;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1176,129,0 chrXII 407663 . T C 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=4.357;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.404;QD=18.85;ReadPosRankSum=1.675;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1183,132,0 chrXII 407835 . C T 1674 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.92;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1707,183,0 chrXII 407941 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.8056;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.94;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2073,228,0 chrXII 408015 . T G 1666 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.64;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1699,186,0 chrXII 408068 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=17.51;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1276,147,0 chrXII 408160 . C A 1671 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.05;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1704,183,0 chrXII 408368 . G C 2299 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.90;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2332,261,0 chrXII 408429 . A T 3587.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=153;Dels=0.00;FS=7.533;HaplotypeScore=14.6314;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.075;QD=23.44;ReadPosRankSum=1.709;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3587,396,0 chrXII 408647 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.16;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2382,255,0 chrXII 409098 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.91;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1637,183,0 chrXII 409269 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,156,0 chrXII 409417 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.6347;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.77;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2110,240,0 chrXII 409486 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.84;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1911,210,0 chrXII 409863 . C T 2003 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.6870;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.31;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2036,225,0 chrXII 410525 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0401;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.52;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1452,162,0 chrXII 410667 . A C 3104 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,148:149:99:3137,351,0 chrXII 410950 . T C 2300 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.01;SB=-1.486e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2333,267,0 chrXII 411601 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=1;MQRankSum=-0.047;QD=14.12;ReadPosRankSum=1.685;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1106,126,0 chrXII 411634 . A G 918 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=1;QD=11.20;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:951,111,0 chrXII 411637 . T C 823 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=1;MQRankSum=-1.213;QD=10.04;ReadPosRankSum=1.689;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:856,99,0 chrXII 411640 . C T 760 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9188;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=1;QD=9.62;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:87:793,87,0 chrXII 411643 . T C 718 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=1;QD=9.57;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:87:751,87,0 chrXII 411760 . T A 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.792;HaplotypeScore=7.8667;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.937;QD=23.68;ReadPosRankSum=2.384;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1809,198,0 chrXII 411841 . T A 1404 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.60;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1437,153,0 chrXII 411982 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=19.43;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1374,150,0 chrXII 412228 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.65;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1499,168,0 chrXII 412550 . A T 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=52;Dels=0.00;FS=2.660;HaplotypeScore=5.8542;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.074;QD=17.90;ReadPosRankSum=2.352;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:964,102,0 chrXII 412752 . C A 1055 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1088,117,0 chrXII 413032 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.31;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1315,147,0 chrXII 413139 . C G 2001 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.27;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2034,222,0 chrXII 413585 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.79;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1929,204,0 chrXII 413957 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.07;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1782,192,0 chrXII 414057 . G T 1737 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.79;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1770,189,0 chrXII 414087 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.78;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1696,183,0 chrXII 414591 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.38;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2301,246,0 chrXII 414993 . G C 1577 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.03;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1610,180,0 chrXII 415537 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.59;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1522,168,0 chrXII 416026 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5063;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.83;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1483,159,0 chrXII 416203 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.90;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1877,201,0 chrXII 416401 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.02;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1799,201,0 chrXII 416464 . C G 1364 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.21;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1397,156,0 chrXII 416803 . C T 3449.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=6.8851;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.991;QD=23.46;ReadPosRankSum=-0.227;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,145:147:99:3449,350,0 chrXII 416876 . C G 2770 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.93;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2803,324,0 chrXII 416918 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.43;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2562,273,0 chrXII 417289 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.52;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2120,228,0 chrXII 417465 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.88;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1374,147,0 chrXII 417560 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2030,219,0 chrXII 417705 . G C 1526 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1559,171,0 chrXII 417956 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.41;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1426,156,0 chrXII 418008 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.95;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1474,156,0 chrXII 418313 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=6.727;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.608;QD=20.80;ReadPosRankSum=2.381;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1510,171,0 chrXII 418391 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.25;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1457,162,0 chrXII 418481 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.31;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1952,213,0 chrXII 419081 . T C 2864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.3078;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.170;QD=23.28;ReadPosRankSum=2.410;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2897,327,0 chrXII 419216 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.88;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1723,183,0 chrXII 419474 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.54;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2388,261,0 chrXII 419667 . C T 3102 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.1227;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.48;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3135,330,0 chrXII 419714 . T A 3598.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=162;Dels=0.00;FS=7.786;HaplotypeScore=10.0162;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.467;QD=22.21;ReadPosRankSum=3.347;SB=-1.537e+03 GT:AD:DP:GQ:PL 1/1:5,157:162:99:3598,387,0 chrXII 419997 . A C 2160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.374;QD=21.18;ReadPosRankSum=1.698;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2193,246,0 chrXII 420674 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.57;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2017,231,0 chrXII 420822 . C T 3107 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6725;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.19;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3140,336,0 chrXII 421364 . G A 1532 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.368;QD=20.16;ReadPosRankSum=1.322;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1565,165,0 chrXII 421465 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.53;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:889,96,0 chrXII 421680 . A G 931 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:964,111,0 chrXII 421733 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.98;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1256,138,0 chrXII 422064 . G A 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.689;QD=21.75;ReadPosRankSum=0.736;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1795,195,0 chrXII 422168 . C A 2204 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=10.8733;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.26;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2237,237,0 chrXII 422366 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.82;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2192,231,0 chrXII 422466 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9179;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.58;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1756,189,0 chrXII 422502 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.17;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2192,240,0 chrXII 422565 . A C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-1.242;QD=20.86;ReadPosRankSum=1.697;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2098,237,0 chrXII 423150 . C G 1402 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1435,165,0 chrXII 423180 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=16.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1131,123,0 chrXII 423318 . C A 592 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=14.80;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:625,69,0 chrXII 423416 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.00;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:843,90,0 chrXII 423821 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.10;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1792,192,0 chrXII 423854 . G C 1854 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.89;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1887,204,0 chrXII 424103 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.93;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1938,210,0 chrXII 424138 . T C 1565 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.86;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1598,189,0 chrXII 424315 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.39;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1772,198,0 chrXII 424491 . T C 2208 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=16.4281;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.26;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2241,246,0 chrXII 424702 . T C 2783 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8079;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.00;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2816,315,0 chrXII 424898 . C G 2929 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.70;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2962,327,0 chrXII 425122 . T C 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=95;Dels=0.00;FS=9.638;HaplotypeScore=11.8043;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-2.000;QD=18.54;ReadPosRankSum=2.264;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,91:95:99:1794,201,0 chrXII 425404 . A G 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.586;QD=16.61;ReadPosRankSum=1.635;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1212,135,0 chrXII 425939 . A T 2396 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.60;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2429,258,0 chrXII 426643 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=19.93;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1548,180,0 chrXII 426653 . C A 1667 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;QD=22.84;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1700,177,0 chrXII 426710 . C T 584 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=12.70;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:617,69,0 chrXII 426754 . A C 460 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=15.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:57:493,57,0 chrXII 426760 . G A 479 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=17.11;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:512,57,0 chrXII 426762 . A G 479 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=17.11;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:57:512,57,0 chrXII 426793 . A T 568 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=13.21;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:63:601,63,0 chrXII 426805 . T G 647 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.40;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:75:680,75,0 chrXII 427050 . G C 778 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=17.29;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:811,90,0 chrXII 427051 . G A 831 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=18.07;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:864,93,0 chrXII 427223 . T C 1134 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.29;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1167,135,0 chrXII 427313 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=15.73;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1323,144,0 chrXII 427325 . T C 1012 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=14.06;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1045,117,0 chrXII 427327 . T G 1009 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;MQRankSum=-1.685;QD=13.64;ReadPosRankSum=1.639;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1042,114,0 chrXII 427328 . C A 1046 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=13.95;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1079,114,0 chrXII 427358 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=16.11;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1370,147,0 chrXII 427615 . T A 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.067;QD=18.48;ReadPosRankSum=1.697;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1881,210,0 chrXII 428048 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.58;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2058,225,0 chrXII 428127 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.04;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1576,165,0 chrXII 428166 . G C 1596 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.00;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1629,183,0 chrXII 428198 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.24;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1726,186,0 chrXII 428263 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1385,159,0 chrXII 428333 . C G 1245 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.86;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1278,147,0 chrXII 428405 . T A 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=4.461;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.791;QD=19.85;ReadPosRankSum=1.689;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1661,177,0 chrXII 428788 . T C 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=5.677;HaplotypeScore=3.3533;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.836;QD=19.12;ReadPosRankSum=1.610;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1677,192,0 chrXII 429078 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.25;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1037,117,0 chrXII 429090 . G A 809 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=14.98;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:90:842,90,0 chrXII 429105 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.45;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:839,93,0 chrXII 429233 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.20;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1054,111,0 chrXII 429313 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.62;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1308,138,0 chrXII 429449 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.31;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1832,195,0 chrXII 429498 . C G 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.15;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2004,222,0 chrXII 429647 . T A 2582 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.83;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2615,282,0 chrXII 429675 . C T 2266 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.37;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2299,249,0 chrXII 430007 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=93;Dels=0.00;FS=6.088;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.207;QD=21.98;ReadPosRankSum=2.903;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:3,90:93:99:2077,237,0 chrXII 430049 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.62;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2109,237,0 chrXII 430703 . C A 1976 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.45;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2009,219,0 chrXII 431528 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.65;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1664,189,0 chrXII 431555 . C A 2289 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.36;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2322,252,0 chrXII 431639 . T C 2920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=135;Dels=0.00;FS=5.746;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.619;QD=21.63;ReadPosRankSum=2.948;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:3,132:135:99:2953,330,0 chrXII 431739 . T C 2075 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.31;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2108,237,0 chrXII 431884 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.87;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1285,147,0 chrXII 431957 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.48;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2310,252,0 chrXII 432434 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.00;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1873,207,0 chrXII 432537 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8037;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.08;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1981,216,0 chrXII 432798 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.17;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,93:96:99:2353,258,0 chrXII 433159 . C T 1811 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.82;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1844,198,0 chrXII 433420 . G C 1374 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1407,162,0 chrXII 433567 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.38;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1510,177,0 chrXII 433606 . G C 1268 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=14.5548;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.85;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1301,144,0 chrXII 433672 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.347;QD=16.83;ReadPosRankSum=1.689;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1413,159,0 chrXII 433914 . T C 228 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.20;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:30:261,30,0 chrXII 434144 . C G 872 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=16.45;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,52:53:99:905,105,0 chrXII 434151 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=19.04;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1042,111,0 chrXII 434305 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.63;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1684,183,0 chrXII 434356 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1168,126,0 chrXII 434869 . A G 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.642;QD=20.30;ReadPosRankSum=1.687;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1596,180,0 chrXII 435003 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1848,201,0 chrXII 435366 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=22.97;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1733,186,0 chrXII 435396 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.92;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1699,183,0 chrXII 435552 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.82;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1678,189,0 chrXII 435615 . C T 1443 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.90;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1476,156,0 chrXII 435711 . G A 1208 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=18.03;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1241,132,0 chrXII 435717 . A G 1028 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;QD=16.58;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1061,117,0 chrXII 435721 . T C 968 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=16.13;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1001,111,0 chrXII 435723 . G A 975 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=16.53;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1008,108,0 chrXII 435756 . A G 640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;MQRankSum=-0.999;QD=12.31;ReadPosRankSum=1.666;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:75:673,75,0 chrXII 435774 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.61;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:705,75,0 chrXII 435837 . C T 1024 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.69;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1057,111,0 chrXII 435951 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.81;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1032,111,0 chrXII 435960 . T A 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=1.471;QD=17.87;ReadPosRankSum=1.667;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:980,108,0 chrXII 436062 . T G 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.417;QD=21.35;ReadPosRankSum=1.669;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1207,132,0 chrXII 436084 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.04;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1022,108,0 chrXII 436179 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.17;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1030,114,0 chrXII 436323 . A G 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.060;QD=20.52;ReadPosRankSum=1.613;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1223,141,0 chrXII 436389 . A G 1152 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.95;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,51:55:99:1185,135,0 chrXII 436416 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.40;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1153,126,0 chrXII 436622 . A T 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=83;Dels=0.00;FS=11.095;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.110;QD=23.46;ReadPosRankSum=2.916;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1980,210,0 chrXII 436725 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.44;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1806,201,0 chrXII 436791 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.73;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1528,168,0 chrXII 437175 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.59;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1495,159,0 chrXII 437267 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.87;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2183,231,0 chrXII 437355 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.27;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1459,168,0 chrXII 438212 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.81;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1638,177,0 chrXII 438353 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1663,177,0 chrXII 438493 . C T 2482 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.77;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2515,276,0 chrXII 438775 . G C 2136 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2169,246,0 chrXII 438877 . A G 3933.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.4876;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.85;SB=-2.172e+03 GT:AD:DP:GQ:PL 1/1:0,179:180:99:3933,432,0 chrXII 438924 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.20;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2126,225,0 chrXII 439126 . A G 2204 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.99;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2237,255,0 chrXII 439218 . C A 2814 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.69;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2847,306,0 chrXII 439290 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.046;QD=15.62;ReadPosRankSum=1.699;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1689,195,0 chrXII 439308 . C T 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=-0.606;QD=20.04;ReadPosRankSum=1.126;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1676,180,0 chrXII 439413 . C A 1783 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.48;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1816,195,0 chrXII 439452 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.73;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1424,150,0 chrXII 439581 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.54;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1201,129,0 chrXII 439587 . T C 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.720;QD=16.68;ReadPosRankSum=1.679;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1117,126,0 chrXII 439662 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.01;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1330,150,0 chrXII 439707 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.43;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1393,156,0 chrXII 440337 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=58.6663;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.81;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1277,144,0 chrXII 440952 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.15;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2691,291,0 chrXII 440979 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.20;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2275,240,0 chrXII 441152 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.37;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1110,117,0 chrXII 441632 . G C 1697 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1730,195,0 chrXII 442034 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.47;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2060,219,0 chrXII 443030 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.68;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1938,207,0 chrXII 443164 . C G 1396 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.39;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1429,159,0 chrXII 443972 . A G 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2248;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.089;QD=20.25;ReadPosRankSum=1.643;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1633,186,0 chrXII 443985 . A T 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=71;Dels=0.00;FS=2.630;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-0.638;QD=17.38;ReadPosRankSum=2.842;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1267,138,0 chrXII 444077 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.334;QD=19.21;ReadPosRankSum=1.672;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1128,123,0 chrXII 444126 . A T 1104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.178;QD=21.65;ReadPosRankSum=1.663;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1137,120,0 chrXII 444302 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.37;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1739,186,0 chrXII 444569 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.85;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1737,186,0 chrXII 444593 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.69;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1481,159,0 chrXII 444668 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.95;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1398,150,0 chrXII 444806 . T C 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.775;DP=85;Dels=0.00;FS=2.613;HaplotypeScore=3.8407;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.179;QD=20.84;ReadPosRankSum=2.846;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1804,195,0 chrXII 445043 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.04;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2171,234,0 chrXII 445082 . A C 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.999;QD=17.88;ReadPosRankSum=1.691;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1553,168,0 chrXII 445085 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.05;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1499,159,0 chrXII 445132 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.10;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1643,174,0 chrXII 445179 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.67;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1646,180,0 chrXII 445227 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2202,255,0 chrXII 445298 . G T 2403 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=14.4104;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.67;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2436,270,0 chrXII 445923 . A G 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=83;Dels=0.00;FS=3.058;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.520;QD=20.02;ReadPosRankSum=2.361;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1695,195,0 chrXII 446652 . A G 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.490;QD=19.35;ReadPosRankSum=1.694;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1813,204,0 chrXII 447057 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=4.717;HaplotypeScore=8.4696;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.646;QD=17.72;ReadPosRankSum=-0.779;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1468,165,0 chrXII 447548 . A G 763 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9523;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=11.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:65:90:796,90,0 chrXII 447928 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.73;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1076,120,0 chrXII 448094 . G T 2135 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.7802;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.96;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2168,231,0 chrXII 448167 . A G 1653 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.75;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1686,186,0 chrXII 448195 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.83;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1441,159,0 chrXII 448357 . T G 1448 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=16.84;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1481,168,0 chrXII 448609 . C G 1437 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=12.3675;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.68;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1470,165,0 chrXII 448838 . A C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=4.320;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.593;QD=21.92;ReadPosRankSum=1.685;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1633,183,0 chrXII 448855 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.91;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1728,183,0 chrXII 449021 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.83;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1566,174,0 chrXII 449028 . T A 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.336;QD=18.88;ReadPosRankSum=0.432;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1487,162,0 chrXII 449248 . A T 1750 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.36;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1783,189,0 chrXII 449577 . G A 240 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=8.28;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:273,30,0 chrXII 449682 . G T 719 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=11.06;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:81:752,81,0 chrXII 449683 . T A 770 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=12.03;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:90:803,90,0 chrXII 450044 . C T 2553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.603;QD=23.42;ReadPosRankSum=0.113;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:2586,276,0 chrXII 450128 . C T 2121 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.95;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2154,225,0 chrXII 450178 . A T 2099 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.07;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2132,231,0 chrXII 450246 . C G 1964 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.67;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1997,219,0 chrXII 450714 . A T 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.135;QD=19.91;ReadPosRankSum=1.705;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2602,276,0 chrXII 450731 . A G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=124;Dels=0.00;FS=2.527;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=1.008;QD=19.87;ReadPosRankSum=1.545;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2497,282,0 chrXII 450835 . C T 2237 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.10;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2270,246,0 chrXII 450946 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.6270;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=15.62;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1064,114,0 chrXII 450962 . T G 647 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=15.40;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:42:75:680,75,0 chrXII 451000 . T C 985 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=15.89;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1018,114,0 chrXII 451012 . A G 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.632;QD=16.32;ReadPosRankSum=1.402;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1061,120,0 chrXII 451070 . G A 1204 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1237,132,0 chrXII 451098 . T C 931 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:964,105,0 chrXII 451216 . C A 496 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.53;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:529,57,0 chrXII 459327 . T C 1728 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.565;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=45.2527;MLEAC=2;MLEAF=1.00;MQ=10.81;MQ0=859;MQRankSum=-0.771;QD=1.73;ReadPosRankSum=7.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:48,950:1000:99:1761,201,0 chrXII 459817 . T C 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.254;DP=1000;DS;Dels=0.00;FS=48.440;HaplotypeScore=2720.9645;MLEAC=1;MLEAF=0.500;MQ=39.92;MQ0=1;MQRankSum=-5.897;QD=0.20;ReadPosRankSum=-2.897;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:869,127:998:99:230,0,4805 chrXII 460103 . T C 17175.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=11.578;DP=1000;DS;Dels=0.00;FS=113.262;HaplotypeScore=149.4031;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.374;QD=17.18;ReadPosRankSum=12.252;SB=-9.554e+03 GT:AD:DP:GQ:PL 1/1:53,944:1000:99:17175,1926,0 chrXII 460251 . T C 11493.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.934;DP=1000;DS;Dels=0.00;FS=80.635;HaplotypeScore=39.1484;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;MQRankSum=-0.399;QD=11.49;ReadPosRankSum=7.357;SB=-7.776e+03 GT:AD:DP:GQ:PL 1/1:23,977:1000:99:11493,1305,0 chrXII 460329 . T C 14962.01 filter AC=2;AF=1.00;AN=2;DP=999;DS;Dels=0.00;FS=0.000;HaplotypeScore=31.6544;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=14.98;SB=-9.204e+03 GT:AD:DP:GQ:PL 1/1:0,996:999:99:14962,1707,0 chrXII 460417 . T A 321 filter AC=2;AF=1.00;AN=2;BaseQRankSum=5.561;DP=1000;DS;Dels=0.00;FS=91.394;HaplotypeScore=867.9597;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=0.050;QD=0.32;ReadPosRankSum=4.348;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:12,988:1000:45:354,45,0 chrXII 460515 . G A 21870.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=49.1136;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=21.87;SB=-1.131e+04 GT:AD:DP:GQ:PL 1/1:0,997:1000:99:21870,2351,0 chrXII 460659 . C T 9751.01 filter AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=24.1570;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=78;QD=9.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,993:996:99:9751,1200,0 chrXII 490443 . A G 331.08 filter AC=2;AF=1.00;AN=2;BaseQRankSum=6.980;DP=102;Dels=0.00;FS=212.076;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=1;MQRankSum=7.006;QD=3.25;ReadPosRankSum=6.954;SB=-9.252e-02 GT:AD:DP:GQ:PL 1/1:78,22:102:20:364,20,0 chrXII 490487 . T C 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=1;MQRankSum=-0.904;QD=17.45;ReadPosRankSum=1.657;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:93:853,93,0 chrXII 490579 . T G 1146 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=17.36;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1179,132,0 chrXII 490608 . G A 1064 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=17.16;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1097,117,0 chrXII 490638 . T C 59.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.238;DP=67;Dels=0.00;FS=3.899;HaplotypeScore=116.1114;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=0.763;QD=0.89;ReadPosRankSum=-4.790;SB=2.49 GT:AD:DP:GQ:PL 1/1:58,9:67:12:92,12,0 chrXII 490855 . T G 1846 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.51;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1879,210,0 chrXII 491119 . C G 2323 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.71;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2356,270,0 chrXII 492148 . C T 2377 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.67;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2410,258,0 chrXII 492640 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9489;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=15.33;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1489,159,0 chrXII 493153 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.66;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2412,255,0 chrXII 493319 . C T 2904 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2937,324,0 chrXII 493473 . G C 2317 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.15;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2350,258,0 chrXII 493483 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.99;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2084,231,0 chrXII 493579 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2052,234,0 chrXII 493681 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.32;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1714,183,0 chrXII 493774 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.51;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1634,183,0 chrXII 493848 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.681;QD=22.21;ReadPosRankSum=1.675;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2743,300,0 chrXII 493918 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.364;QD=19.25;ReadPosRankSum=1.689;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1631,180,0 chrXII 495002 . C G 1242 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.79;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1275,144,0 chrXII 495311 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.98;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1795,198,0 chrXII 495966 . A T 687 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.76;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:720,81,0 chrXII 496001 . T A 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.251;QD=24.53;ReadPosRankSum=1.636;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:96:916,96,0 chrXII 497723 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2908;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.18;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1643,186,0 chrXII 497835 . T C 1740 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.31;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1773,204,0 chrXII 498457 . T C 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=5.156;HaplotypeScore=3.5913;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.675;QD=20.28;ReadPosRankSum=1.556;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1250,141,0 chrXII 498570 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1095,117,0 chrXII 500416 . C G 2619 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.19;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2652,303,0 chrXII 500806 . G A 3582.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.39;SB=-1.666e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3582,378,0 chrXII 500833 . T C 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=4.669;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.852;QD=21.75;ReadPosRankSum=1.677;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2774,303,0 chrXII 502411 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.48;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1021,111,0 chrXII 502438 . C T 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=4.181;HaplotypeScore=3.0128;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.228;QD=20.56;ReadPosRankSum=1.669;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1164,126,0 chrXII 503710 . A G 2841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=3.076;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.491;QD=21.20;ReadPosRankSum=1.706;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2874,327,0 chrXII 504665 . A G 2730 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2763,318,0 chrXII 505031 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=3.998;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.998;QD=19.36;ReadPosRankSum=1.615;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2337,261,0 chrXII 505760 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.24;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1182,135,0 chrXII 505937 . T A 1380 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1413,153,0 chrXII 507075 . C T 3053 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.0057;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.78;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3086,333,0 chrXII 507459 . C A 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DP=102;Dels=0.00;FS=2.352;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=0;MQRankSum=0.330;QD=0.70;ReadPosRankSum=-4.074;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:75,27:102:99:101,0,1282 chrXII 507468 . A C 1027.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.549;DP=99;Dels=0.00;FS=7.620;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=0;MQRankSum=-0.125;QD=10.37;ReadPosRankSum=2.223;SB=-2.040e+02 GT:AD:DP:GQ:PL 0/1:32,66:99:99:1057,0,234 chrXII 507483 . A G 696.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.958;DP=88;Dels=0.00;FS=5.729;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=46.72;MQ0=0;MQRankSum=-4.307;QD=7.91;ReadPosRankSum=-2.002;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:42,46:88:99:726,0,439 chrXII 507495 . C A 460.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.948;DP=83;Dels=0.00;FS=5.273;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=47.23;MQ0=0;MQRankSum=-5.178;QD=5.54;ReadPosRankSum=-4.360;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:47,36:83:99:490,0,624 chrXII 507501 . G A 289.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;DP=76;Dels=0.00;FS=10.297;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=48.26;MQ0=0;MQRankSum=-6.078;QD=3.80;ReadPosRankSum=-5.003;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:49,27:76:99:319,0,726 chrXII 508294 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1496,156,0 chrXII 508649 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1626,183,0 chrXII 508832 . G A 2310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=110;Dels=0.00;FS=5.229;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.197;QD=21.00;ReadPosRankSum=1.417;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2343,270,0 chrXII 509010 . A G 2338 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.69;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2371,273,0 chrXII 509318 . T C 2536 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.11;SB=-1.637e+03 GT:AD:DP:GQ:PL 1/1:0,133:140:99:2569,288,0 chrXII 509324 . T C 2473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.114;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-1.432;QD=19.17;ReadPosRankSum=1.705;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:1,126:129:99:2506,273,0 chrXII 509438 . A C 2443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=121;Dels=0.00;FS=4.015;HaplotypeScore=7.4668;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.675;QD=20.19;ReadPosRankSum=-0.129;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2476,257,0 chrXII 509612 . C A 2166 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.20;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2199,252,0 chrXII 510379 . T C 1066 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.76;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:1099,123,0 chrXII 510486 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.386;QD=19.34;ReadPosRankSum=1.663;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1000,114,0 chrXII 510559 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.03;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1495,162,0 chrXII 510901 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.88;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1365,147,0 chrXII 510993 . T C 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=99;Dels=0.00;FS=6.121;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.806;QD=21.76;ReadPosRankSum=2.929;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2187,249,0 chrXII 511071 . A C 1905 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.64;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1938,219,0 chrXII 511536 . G A 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.335;DP=96;Dels=0.00;FS=4.260;HaplotypeScore=79.3735;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.613;QD=13.27;ReadPosRankSum=-1.552;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1307,147,0 chrXII 511578 . A G 637 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=8.61;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:75:670,75,0 chrXII 511581 . A G 630 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=8.08;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:75:663,75,0 chrXII 511957 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.41;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1339,144,0 chrXII 512095 . A G 691 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=12.34;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:81:724,81,0 chrXII 512877 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=15.41;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:78:742,78,0 chrXII 513031 . A G 289 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.06;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:36:322,36,0 chrXII 513101 . G A 467 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.30;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:57:500,57,0 chrXII 513294 . T C 651 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.25;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:75:684,75,0 chrXII 513570 . T C 2086 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.65;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2119,231,0 chrXII 513660 . A T 1546 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.61;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1579,174,0 chrXII 514581 . G C 765 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=14.71;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:93:798,93,0 chrXII 514648 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8983;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.66;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1699,192,0 chrXII 514698 . C G 1240 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=15.90;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1273,141,0 chrXII 514730 . A C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=86;Dels=0.00;FS=2.915;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.293;QD=17.47;ReadPosRankSum=2.389;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,79:86:99:1535,168,0 chrXII 514759 . G A 1798 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.43;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1831,192,0 chrXII 514832 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1710,186,0 chrXII 515142 . G T 1131 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.84;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1164,126,0 chrXII 515723 . G A 3223.06 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.93;SB=-1.610e+03 GT:AD:DP:GQ:PL 1/1:0,143:147:99:3256,351,0 chrXII 516197 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.80;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2217,240,0 chrXII 516236 . G T 2259 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8227;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.31;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2292,252,0 chrXII 517114 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.03;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2016,222,0 chrXII 517338 . A G 2571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=3.241;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.926;QD=21.79;ReadPosRankSum=1.702;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2604,285,0 chrXII 517690 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1982,210,0 chrXII 517747 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.61;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2237,252,0 chrXII 518152 . T A 1416 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.84;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1449,156,0 chrXII 518395 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.47;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1336,150,0 chrXII 518452 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.32;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1283,147,0 chrXII 518549 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.67;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1041,117,0 chrXII 518561 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.64;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1048,117,0 chrXII 518617 . A G 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=3.062;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.917;QD=17.78;ReadPosRankSum=2.390;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1491,168,0 chrXII 518629 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.87;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1618,177,0 chrXII 518631 . A G 1540 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.55;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1573,174,0 chrXII 519157 . A T 1702 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.79;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1735,189,0 chrXII 519163 . G C 1691 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.79;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1724,195,0 chrXII 519688 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=3.5412;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.64;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2127,228,0 chrXII 520061 . C A 1176 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.93;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1209,129,0 chrXII 520774 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.10;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1480,168,0 chrXII 520933 . T C 2094 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.94;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2127,240,0 chrXII 521221 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.5076;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.39;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1778,192,0 chrXII 521359 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.40;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1787,192,0 chrXII 521380 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.26;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1366,153,0 chrXII 521410 . T C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.514;QD=14.69;ReadPosRankSum=1.694;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1399,156,0 chrXII 522608 . A G 2369 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.46;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2402,264,0 chrXII 522961 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.1847;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.67;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1659,186,0 chrXII 524147 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1420,159,0 chrXII 524390 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.18;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1184,126,0 chrXII 524691 . T C 1154 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3595;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.23;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1187,135,0 chrXII 525291 . A G 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=2.899;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.021;QD=16.85;ReadPosRankSum=2.365;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:2,56:59:99:1027,117,0 chrXII 525292 . C A 1097 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.28;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1130,120,0 chrXII 525410 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.66;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1996,210,0 chrXII 525539 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.00;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1683,180,0 chrXII 525791 . G A 2135 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.14;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2168,234,0 chrXII 525800 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.61;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1955,216,0 chrXII 526817 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.03;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.59;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1522,162,0 chrXII 526820 . C T 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=80;Dels=0.00;FS=2.967;HaplotypeScore=7.7518;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.940;QD=18.57;ReadPosRankSum=2.080;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1519,162,0 chrXII 527111 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=6.081;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.883;QD=21.07;ReadPosRankSum=2.383;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1592,174,0 chrXII 527310 . A G 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.334;QD=21.05;ReadPosRankSum=1.653;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1864,213,0 chrXII 527685 . A G 3005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.975;QD=19.90;ReadPosRankSum=1.709;SB=-1.676e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3038,339,0 chrXII 527715 . T C 3017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=149;Dels=0.00;FS=5.011;HaplotypeScore=10.4492;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.546;QD=20.25;ReadPosRankSum=1.709;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3050,342,0 chrXII 527873 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.35;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1994,213,0 chrXII 528191 . T A 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=10.181;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.012;QD=21.63;ReadPosRankSum=2.917;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1850,195,0 chrXII 528220 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0926;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.05;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2238,249,0 chrXII 528418 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.49;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1838,201,0 chrXII 528452 . C A 1933 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.01;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1966,210,0 chrXII 528602 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.71;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1483,159,0 chrXII 528671 . C A 1932 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.77;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1965,216,0 chrXII 528749 . T A 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.504;QD=17.36;ReadPosRankSum=1.425;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1422,162,0 chrXII 528758 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.3435;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.53;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1646,174,0 chrXII 529055 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.00;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1881,201,0 chrXII 529097 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.99;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1892,213,0 chrXII 529359 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.96;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2234,243,0 chrXII 529524 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.063;QD=20.89;ReadPosRankSum=1.693;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1871,210,0 chrXII 529736 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2103,234,0 chrXII 530261 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.10;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2016,219,0 chrXII 530373 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=15.95;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1086,117,0 chrXII 530377 . G A 925 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=15.16;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:958,102,0 chrXII 530404 . G T 776 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=7.12;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:87:809,87,0 chrXII 530423 . A G 281.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.895;DP=112;Dels=0.00;FS=34.601;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.81;MQ0=0;MQRankSum=-2.195;QD=2.51;ReadPosRankSum=-7.879;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:68,44:112:99:311,0,459 chrXII 530678 . G T 639 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=20.61;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:672,72,0 chrXII 530780 . T A 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.083;QD=24.34;ReadPosRankSum=1.650;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1104,117,0 chrXII 530858 . T G 921 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.02;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:954,105,0 chrXII 530878 . A G 710 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.68;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:743,81,0 chrXII 531361 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.85;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1448,165,0 chrXII 531970 . T C 2091 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.54;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2124,243,0 chrXII 532084 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4165;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.00;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2013,225,0 chrXII 532381 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=3.191;HaplotypeScore=3.4526;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=0.183;QD=17.65;ReadPosRankSum=1.619;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2221,249,0 chrXII 532384 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.22;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2256,249,0 chrXII 532399 . C T 2626 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.05;SB=-1.656e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2659,279,0 chrXII 532555 . C G 2477 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.82;SB=-1.395e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2510,279,0 chrXII 532747 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=81;Dels=0.00;FS=3.066;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.015;QD=18.68;ReadPosRankSum=2.388;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1546,177,0 chrXII 532984 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.193;QD=22.32;ReadPosRankSum=1.655;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2042,234,0 chrXII 533081 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1556,171,0 chrXII 533245 . G A 1885 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1918,207,0 chrXII 533365 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.04;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2176,243,0 chrXII 533966 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.1283;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.88;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1474,159,0 chrXII 534385 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.59;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1427,159,0 chrXII 534611 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.96;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1640,174,0 chrXII 535065 . A T 974 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.88;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1007,108,0 chrXII 535113 . T C 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=8.5459;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.060;QD=17.13;ReadPosRankSum=1.673;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1078,123,0 chrXII 535290 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.75;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1338,141,0 chrXII 535533 . G A 3382.01 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.33;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,137:139:99:3382,360,0 chrXII 535603 . C T 3066 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2179;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.53;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3099,333,0 chrXII 535696 . A G 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=141;Dels=0.00;FS=5.364;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.683;QD=21.82;ReadPosRankSum=1.683;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,140:141:99:3109,354,0 chrXII 535711 . C A 3213.98 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.8975;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.860;QD=22.32;ReadPosRankSum=0.521;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3247,339,0 chrXII 535744 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.75;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2304,249,0 chrXII 535960 . C T 2650 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.40;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2683,288,0 chrXII 535963 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.87;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2571,273,0 chrXII 536245 . T A 2325 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.70;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2358,261,0 chrXII 536332 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.85;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1781,192,0 chrXII 536548 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.3586;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.84;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1325,150,0 chrXII 536776 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2310,249,0 chrXII 536833 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.42;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1451,165,0 chrXII 536867 . C T 860 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.55;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:893,96,0 chrXII 536876 . T A 756 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.12;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:789,87,0 chrXII 537122 . A G 1452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.679;QD=22.00;ReadPosRankSum=0.986;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1485,171,0 chrXII 537263 . A G 2596 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.20;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2629,291,0 chrXII 537571 . A G 2403 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.36;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2436,273,0 chrXII 537994 . A G 1232 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.40;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1265,141,0 chrXII 538106 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.12;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1294,138,0 chrXII 538121 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.96;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1204,135,0 chrXII 538270 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.60;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1207,138,0 chrXII 538303 . G C 1230 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.22;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1263,141,0 chrXII 538309 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.53;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1067,117,0 chrXII 538336 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=15.42;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:850,90,0 chrXII 538387 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.180;QD=21.75;ReadPosRankSum=1.682;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1534,165,0 chrXII 538477 . A C 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.300;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=1.341;QD=15.48;ReadPosRankSum=1.676;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1008,114,0 chrXII 538830 . G C 1746 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.59;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1779,195,0 chrXII 539059 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.43;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1495,159,0 chrXII 539704 . C T 421 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:48:454,48,0 chrXII 539764 . C T 732 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:81:765,81,0 chrXII 539905 . G A 1234 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1267,135,0 chrXII 539923 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.03;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1499,165,0 chrXII 539979 . G A 649 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.54;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:35:78:682,78,0 chrXII 540147 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.43;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1218,138,0 chrXII 540219 . A T 1476 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.22;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1509,168,0 chrXII 540610 . C A 1325 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=58.7282;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.43;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1358,150,0 chrXII 540779 . T C 2148 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.41;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2181,246,0 chrXII 541018 . G C 2165 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.23;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2198,240,0 chrXII 541031 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.2919;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.976;QD=19.47;ReadPosRankSum=1.701;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2194,243,0 chrXII 541062 . T C 2744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=0.853;QD=20.95;ReadPosRankSum=1.705;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2777,306,0 chrXII 541159 . T A 2836 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=15.3475;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.83;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:2869,306,0 chrXII 541253 . G T 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.48;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1319,144,0 chrXII 541271 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.34;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:892,99,0 chrXII 541310 . A G 891 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=13.50;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:924,105,0 chrXII 541508 . A G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=1.375;QD=13.74;ReadPosRankSum=1.589;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1366,147,0 chrXII 541624 . T C 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.080;QD=20.77;ReadPosRankSum=1.572;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1383,153,0 chrXII 541643 . T G 1112 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.85;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1145,129,0 chrXII 541663 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=15.55;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:997,111,0 chrXII 541773 . C T 666 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.59;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:699,75,0 chrXII 543095 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=36;Dels=0.00;FS=33.961;HaplotypeScore=5.1736;MLEAC=1;MLEAF=0.500;MQ=53.23;MQ0=0;MQRankSum=-0.550;QD=0.34;ReadPosRankSum=-2.840;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,8:36:42:42,0,335 chrXII 543100 . A G 369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=32;Dels=0.00;FS=2.674;HaplotypeScore=7.7249;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.125;QD=11.53;ReadPosRankSum=2.203;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:45:402,45,0 chrXII 543240 . T C 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=4.135;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.672;QD=18.36;ReadPosRankSum=1.672;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1098,120,0 chrXII 543480 . G A 690 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.56;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:723,78,0 chrXII 544057 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.09;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1511,174,0 chrXII 544246 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.86;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2395,261,0 chrXII 544316 . A G 2111 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.54;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2144,240,0 chrXII 544705 . T C 3076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=9.720;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.190;QD=20.51;ReadPosRankSum=2.318;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,147:150:99:3109,351,0 chrXII 544933 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1563;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.48;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1678,180,0 chrXII 544939 . C T 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=90;Dels=0.00;FS=2.845;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.245;QD=16.70;ReadPosRankSum=0.151;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1536,165,0 chrXII 545023 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.23;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2071,234,0 chrXII 545104 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.71;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2595,282,0 chrXII 545130 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.65;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2253,240,0 chrXII 545221 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.29;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2440,270,0 chrXII 545338 . T A 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.660;QD=23.76;ReadPosRankSum=1.624;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2314,249,0 chrXII 545567 . A C 1968 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.16;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2001,216,0 chrXII 545673 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.98;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1711,186,0 chrXII 546249 . A C 1324 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.07;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1357,150,0 chrXII 546382 . A G 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=6.762;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.002;QD=21.30;ReadPosRankSum=2.388;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1737,195,0 chrXII 547572 . A G 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.642;QD=20.61;ReadPosRankSum=1.687;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1620,180,0 chrXII 547847 . C T 2408 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=26.46;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2441,261,0 chrXII 548297 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.00;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1566,168,0 chrXII 548327 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1246,138,0 chrXII 548452 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:952,105,0 chrXII 548551 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:970,102,0 chrXII 548742 . A G 1512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.912;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.325;QD=23.26;ReadPosRankSum=1.624;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1545,171,0 chrXII 549170 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=21.42;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1404,156,0 chrXII 549297 . A G 1308 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.577;QD=21.80;ReadPosRankSum=1.617;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1341,150,0 chrXII 549369 . G C 1055 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.18;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1088,123,0 chrXII 549562 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.75;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1595,180,0 chrXII 549589 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.06;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1732,198,0 chrXII 549760 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.33;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2154,240,0 chrXII 549838 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=21.39;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2044,228,0 chrXII 550665 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.26;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2150,240,0 chrXII 550771 . C T 2042 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.20;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2075,222,0 chrXII 550837 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.44;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1744,189,0 chrXII 551145 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.59;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1998,216,0 chrXII 551256 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=16.82;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1244,138,0 chrXII 551337 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.22;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1825,192,0 chrXII 551454 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=83;Dels=0.00;FS=6.180;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.609;QD=21.58;ReadPosRankSum=2.391;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1824,207,0 chrXII 551535 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.61;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1827,198,0 chrXII 551847 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.05;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1572,168,0 chrXII 552056 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.42;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1672,189,0 chrXII 552323 . T G 1537 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.77;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1570,183,0 chrXII 552649 . C G 1981 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.85;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:111:99:2014,225,0 chrXII 552790 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.13;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1393,153,0 chrXII 552832 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.42;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1696,186,0 chrXII 553063 . A G 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;DP=90;Dels=0.00;FS=9.490;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.529;QD=19.37;ReadPosRankSum=1.863;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:3,86:90:99:1776,169,0 chrXII 553414 . C T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.7419;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.509;QD=18.45;ReadPosRankSum=0.875;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1786,174,0 chrXII 553728 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=8.6324;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.12;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2568,282,0 chrXII 554211 . A G 1591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.803;DP=97;Dels=0.00;FS=2.561;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.115;QD=16.40;ReadPosRankSum=2.928;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1624,183,0 chrXII 554694 . C G 2008 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.28;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2041,231,0 chrXII 554937 . A G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.309;QD=20.90;ReadPosRankSum=1.679;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,131:133:99:2813,318,0 chrXII 554971 . T C 2593 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.10;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2626,291,0 chrXII 555034 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.09;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2002,222,0 chrXII 555043 . G T 2170 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.91;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2203,237,0 chrXII 555339 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3086;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.379;QD=14.28;ReadPosRankSum=1.402;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1532,168,0 chrXII 555957 . G A 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.630;QD=22.38;ReadPosRankSum=1.223;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2316,246,0 chrXII 555993 . A G 2549 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.2444;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.56;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2582,294,0 chrXII 556056 . C T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=14.2122;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.75;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3640,390,0 chrXII 556330 . C T 993 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=16.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1026,111,0 chrXII 556347 . G A 1004 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=13.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1037,108,0 chrXII 556350 . G A 1028 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.485;QD=13.71;ReadPosRankSum=-0.208;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1061,111,0 chrXII 556365 . A G 1077 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.04;FS=0.000;HaplotypeScore=9.4873;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.126;QD=12.98;ReadPosRankSum=1.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1110,123,0 chrXII 556568 . T C 873 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:35:99:906,99,0 chrXII 556879 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.14;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:971,105,0 chrXII 557399 . A G 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=5.216;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.364;QD=21.89;ReadPosRankSum=1.701;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2507,285,0 chrXII 557420 . A G 2104 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.69;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2137,243,0 chrXII 557570 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.00;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1743,192,0 chrXII 557573 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.96;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1667,189,0 chrXII 557979 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.80;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2259,240,0 chrXII 558134 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.0227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2529,273,0 chrXII 558341 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.3187;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.416;QD=20.39;ReadPosRankSum=1.697;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,99:103:99:2133,237,0 chrXII 558665 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.2567;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.13;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2308,252,0 chrXII 558945 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.80;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2104,225,0 chrXII 559511 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.80;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2191,240,0 chrXII 559835 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.41;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1510,171,0 chrXII 559898 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=16.76;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1826,198,0 chrXII 559904 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.33;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1627,183,0 chrXII 560504 . T C 673 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.43;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:706,78,0 chrXII 560519 . G A 627 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.23;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:660,72,0 chrXII 560821 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.3452;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.29;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1616,186,0 chrXII 562055 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.96;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,144,0 chrXII 562070 . T C 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.840;QD=18.82;ReadPosRankSum=1.680;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1294,144,0 chrXII 562305 . C G 1899 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1932,213,0 chrXII 563186 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.68;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1501,168,0 chrXII 563207 . T C 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=5.763;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.389;QD=18.46;ReadPosRankSum=1.662;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:956,105,0 chrXII 563770 . G A 646 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,31:34:75:679,75,0 chrXII 564068 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.94;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1389,156,0 chrXII 564107 . A T 1575 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1608,171,0 chrXII 564403 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1316,147,0 chrXII 564762 . A T 1092 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.85;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1125,123,0 chrXII 565496 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.42;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2341,258,0 chrXII 565505 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.05;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2109,234,0 chrXII 565625 . A G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=72;Dels=0.00;FS=8.301;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-0.874;QD=20.03;ReadPosRankSum=2.313;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1475,159,0 chrXII 566015 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.46;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1482,171,0 chrXII 566021 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=16.41;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1362,147,0 chrXII 566151 . G T 1867 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.71;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1900,204,0 chrXII 566307 . A G 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=86;Dels=0.01;FS=5.352;HaplotypeScore=3.8740;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-2.231;QD=19.47;ReadPosRankSum=3.352;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:1707,186,0 chrXII 566338 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=19.10;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1504,165,0 chrXII 566515 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.89;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2178,234,0 chrXII 566615 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1541;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.88;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1674,183,0 chrXII 567365 . C T 987 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.45;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1020,111,0 chrXII 567955 . C G 1103 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.69;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1136,126,0 chrXII 567957 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.51;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1184,126,0 chrXII 568114 . A T 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.782;QD=24.33;ReadPosRankSum=1.006;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1566,171,0 chrXII 568272 . G C 758 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=14.04;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:87:791,87,0 chrXII 568449 . A T 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=91;Dels=0.00;FS=6.163;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.292;QD=20.65;ReadPosRankSum=2.900;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1912,207,0 chrXII 568546 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.46;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1412,153,0 chrXII 568764 . C A 2032 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.83;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2065,222,0 chrXII 568917 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=69;Dels=0.00;FS=3.066;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.125;QD=19.55;ReadPosRankSum=2.271;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1382,159,0 chrXII 568962 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.08;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1277,144,0 chrXII 569046 . T A 1378 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1411,159,0 chrXII 569539 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.99;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1732,183,0 chrXII 570009 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.0714;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.24;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2169,228,0 chrXII 570914 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.75;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1159,123,0 chrXII 571001 . C T 1872 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0719;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.02;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1905,204,0 chrXII 571412 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.44;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1416,150,0 chrXII 571880 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1187,129,0 chrXII 571911 . T C 1290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.757;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=22.63;ReadPosRankSum=-1.428;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1323,147,0 chrXII 572164 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.58;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1695,192,0 chrXII 572294 . G A 943 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.49;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:976,111,0 chrXII 572946 . T C 1471 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.62;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1504,165,0 chrXII 573273 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.97;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1365,144,0 chrXII 573498 . T A 1728 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.67;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1761,186,0 chrXII 573646 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.48;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1604,174,0 chrXII 573671 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.26;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1275,144,0 chrXII 573804 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.24;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1243,138,0 chrXII 574468 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.48;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1650,186,0 chrXII 574584 . C G 1616 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1649,177,0 chrXII 574950 . T C 2105 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.64;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2138,234,0 chrXII 575116 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.34;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1095,117,0 chrXII 575141 . G T 710 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.4749;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=12.91;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:743,81,0 chrXII 575257 . C A 1255 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.61;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1288,138,0 chrXII 575473 . T G 1601 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.64;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1634,186,0 chrXII 575599 . C T 1134 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.00;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1167,126,0 chrXII 575627 . C G 1022 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.86;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1055,120,0 chrXII 576016 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.43;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1490,159,0 chrXII 576036 . G C 1229 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.62;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1262,138,0 chrXII 576111 . A C 1252 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.41;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1285,138,0 chrXII 576112 . T C 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=8.230;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.650;QD=17.14;ReadPosRankSum=2.117;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1301,141,0 chrXII 576211 . T C 706 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=10.54;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:739,84,0 chrXII 576339 . A T 958 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.81;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:991,108,0 chrXII 577508 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.75;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1648,177,0 chrXII 577535 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.89;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1203,135,0 chrXII 577658 . T C 498 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=15.56;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:60:531,60,0 chrXII 578913 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=16.41;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1149,120,0 chrXII 578932 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=15.32;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1075,120,0 chrXII 579037 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;MQRankSum=0.693;QD=16.55;ReadPosRankSum=1.683;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1208,138,0 chrXII 579316 . G A 2737 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.59;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2770,309,0 chrXII 579749 . T G 2189 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.8018;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.25;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2222,252,0 chrXII 580383 . A G 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4155;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.17;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1768,201,0 chrXII 581223 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.24;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1383,153,0 chrXII 581598 . A G 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.275;QD=20.17;ReadPosRankSum=1.667;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1102,126,0 chrXII 581793 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.44;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1471,165,0 chrXII 581795 . C A 1529 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.12;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1562,165,0 chrXII 582033 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.34;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1445,156,0 chrXII 582520 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=118;Dels=0.00;FS=5.234;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.532;QD=18.33;ReadPosRankSum=3.382;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2196,240,0 chrXII 583193 . A C 1504 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.05;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1537,174,0 chrXII 583195 . A C 1415 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.38;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1448,162,0 chrXII 583229 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.22;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1691,180,0 chrXII 583697 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.41;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1929,216,0 chrXII 583763 . T G 2171 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.56;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2204,252,0 chrXII 584165 . G A 2270 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2303,246,0 chrXII 584201 . A G 2290 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1949;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.41;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2323,255,0 chrXII 584675 . G A 1990 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.4475;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.51;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2023,216,0 chrXII 584735 . C A 2098 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.79;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2131,231,0 chrXII 585083 . T A 1369 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.49;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1402,153,0 chrXII 585608 . T G 1257 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.61;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1290,138,0 chrXII 585709 . A T 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=60;Dels=0.05;FS=2.615;HaplotypeScore=10.8868;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.279;QD=21.45;ReadPosRankSum=2.364;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1320,144,0 chrXII 586052 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=16.74;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1004,108,0 chrXII 586059 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=17.08;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1041,111,0 chrXII 586069 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=15.91;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1051,117,0 chrXII 586081 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0973;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.12;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1145,123,0 chrXII 586255 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.126;QD=19.71;ReadPosRankSum=1.682;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1393,156,0 chrXII 586284 . C T 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.75;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,183,0 chrXII 586855 . C T 2747 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.98;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2780,303,0 chrXII 587297 . G A 3037 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8005;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.18;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3070,324,0 chrXII 587519 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=6.834;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.014;QD=20.06;ReadPosRankSum=1.690;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1678,183,0 chrXII 588394 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.73;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1059,117,0 chrXII 588604 . A G 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=4.337;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.489;QD=22.77;ReadPosRankSum=1.672;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1331,153,0 chrXII 589024 . A G 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.291;QD=15.69;ReadPosRankSum=2.347;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1163,132,0 chrXII 589093 . C A 1479 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.49;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1512,162,0 chrXII 589169 . C A 1572 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=16.4895;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=15.88;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1605,177,0 chrXII 589177 . C A 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=0.405;QD=18.87;ReadPosRankSum=-0.332;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1845,195,0 chrXII 589339 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.35;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1307,147,0 chrXII 589563 . A G 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.260;DP=88;Dels=0.02;FS=13.805;HaplotypeScore=6.9422;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.647;QD=19.25;ReadPosRankSum=4.037;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:7,78:86:99:1727,198,0 chrXII 589596 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.83;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2019,225,0 chrXII 589719 . A C 914 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.45;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:947,105,0 chrXII 589767 . T C 927 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.54;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:960,108,0 chrXII 590160 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.53;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1045,117,0 chrXII 590727 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.78;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1449,153,0 chrXII 591438 . A G 702 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.97;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:735,81,0 chrXII 591465 . A T 553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;DP=30;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.271;QD=18.43;ReadPosRankSum=1.271;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:63:586,63,0 chrXII 591568 . G T 706 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:739,78,0 chrXII 591955 . G T 816 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:849,90,0 chrXII 592198 . T G 1044 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.00;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1077,123,0 chrXII 592199 . T A 1088 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=19.09;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1121,120,0 chrXII 592353 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.54;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1670,186,0 chrXII 592468 . C A 1454 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.77;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1487,162,0 chrXII 592578 . C T 591 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=1;QD=18.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:624,69,0 chrXII 592686 . C T 188.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=7.83;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:24:221,24,0 chrXII 592872 . A G 1794 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;QD=24.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1827,210,0 chrXII 599061 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=3;MQRankSum=0.731;QD=3.10;ReadPosRankSum=-0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:3,4:8:6:56,6,0 chrXII 599062 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=2;MQRankSum=0.731;QD=2.97;ReadPosRankSum=-0.731;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:3,4:7:6:52,6,0 chrXII 599111 . T G 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;MQRankSum=0.720;QD=14.26;ReadPosRankSum=1.679;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:960,108,0 chrXII 599206 . A C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=108;Dels=0.00;FS=3.181;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=-1.099;QD=21.05;ReadPosRankSum=0.500;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,103:108:99:2306,261,0 chrXII 599232 . T A 1765 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=22.06;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1798,195,0 chrXII 599333 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=0;QD=20.67;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1811,195,0 chrXII 599406 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.1600;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=21.44;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1898,207,0 chrXII 599437 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.763;HaplotypeScore=9.7493;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=1.614;QD=21.69;ReadPosRankSum=1.693;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1963,222,0 chrXII 599482 . G C 1351 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=63.6068;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=16.68;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1384,153,0 chrXII 599529 . A G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.695;HaplotypeScore=7.4544;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;MQRankSum=-0.613;QD=12.24;ReadPosRankSum=1.696;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1208,135,0 chrXII 599530 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.649;HaplotypeScore=7.4544;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-1.295;QD=12.24;ReadPosRankSum=1.696;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1196,132,0 chrXII 599558 . A C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=8.697;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-1.607;QD=13.01;ReadPosRankSum=2.404;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:1451,165,0 chrXII 599677 . T C 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0800;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.410;QD=20.66;ReadPosRankSum=1.641;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1603,180,0 chrXII 599691 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.39;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1460,162,0 chrXII 599718 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.12;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1582,180,0 chrXII 599905 . G A 2253 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5951;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.72;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2286,243,0 chrXII 600169 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9316;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.92;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1806,192,0 chrXII 600238 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1807,195,0 chrXII 600445 . T G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.6590;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.152;QD=18.24;ReadPosRankSum=2.910;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:1857,192,0 chrXII 600547 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1382;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.98;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2331,252,0 chrXII 600676 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1517,171,0 chrXII 601080 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1103,120,0 chrXII 601364 . T C 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.113;QD=19.69;ReadPosRankSum=1.700;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2140,234,0 chrXII 601489 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=7.219;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.157;QD=20.62;ReadPosRankSum=2.390;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1724,195,0 chrXII 601624 . G A 2742 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.48;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2775,297,0 chrXII 601888 . A G 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=94;Dels=0.00;FS=2.960;HaplotypeScore=9.8237;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.144;QD=19.61;ReadPosRankSum=2.345;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1876,213,0 chrXII 601934 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.80;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2310,246,0 chrXII 601938 . T A 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.383;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.631;QD=20.81;ReadPosRankSum=1.667;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2280,246,0 chrXII 602107 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.17;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1917,210,0 chrXII 602186 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=22.1155;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=15.23;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:840,93,0 chrXII 602338 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.97;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1879,201,0 chrXII 603057 . A T 1641 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=18.23;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1674,180,0 chrXII 603075 . G T 1763 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.12;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1796,192,0 chrXII 603077 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=16.83;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1767,198,0 chrXII 603141 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.39;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1759,189,0 chrXII 603161 . T C 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.439;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.477;QD=18.57;ReadPosRankSum=2.318;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1444,159,0 chrXII 603180 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.52;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1570,168,0 chrXII 603209 . A T 884 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=13.81;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:917,99,0 chrXII 603216 . A T 823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;MQRankSum=0.595;QD=12.86;ReadPosRankSum=1.678;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:93:856,93,0 chrXII 603319 . A G 606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.549;QD=14.78;ReadPosRankSum=1.648;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:75:639,75,0 chrXII 603325 . C T 671 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.91;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:75:704,75,0 chrXII 603566 . A G 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=0.293;QD=17.22;ReadPosRankSum=1.679;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1152,129,0 chrXII 603584 . T A 1029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=0.091;QD=18.05;ReadPosRankSum=1.611;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1062,114,0 chrXII 603907 . C A 1872 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.70;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1905,204,0 chrXII 604223 . C T 3790.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.44;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3790,405,0 chrXII 604825 . A G 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.809;QD=18.58;ReadPosRankSum=2.403;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2003,225,0 chrXII 604997 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.10;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1257,135,0 chrXII 605168 . G T 869 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=18.89;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:902,96,0 chrXII 605240 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=11.5373;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=16.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1273,147,0 chrXII 605250 . A T 1360 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1393,147,0 chrXII 605537 . C A 833 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.50;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:93:866,93,0 chrXII 605830 . A G 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.687;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=1.990;QD=19.53;ReadPosRankSum=2.384;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1517,165,0 chrXII 606088 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.02;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2355,258,0 chrXII 606112 . A G 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.126;DP=118;Dels=0.00;FS=6.372;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=1.371;QD=14.81;ReadPosRankSum=2.407;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:2,112:118:99:1781,204,0 chrXII 606127 . C A 1772 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.04;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1805,201,0 chrXII 606238 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=66;Dels=0.00;FS=4.569;HaplotypeScore=8.1543;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.512;QD=16.24;ReadPosRankSum=1.622;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1105,123,0 chrXII 606418 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.88;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2100,225,0 chrXII 606826 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.86;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2610,288,0 chrXII 606928 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.93;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1283,141,0 chrXII 607075 . C A 1395 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.85;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1428,156,0 chrXII 607128 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.39;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2001,213,0 chrXII 607134 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.55;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2279,249,0 chrXII 607457 . T C 2203 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0732;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.19;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2236,249,0 chrXII 607531 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.82;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1143,123,0 chrXII 607655 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=17.11;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:974,111,0 chrXII 607674 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=17.57;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:894,99,0 chrXII 607680 . A G 872 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=15.85;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:905,102,0 chrXII 607707 . A G 887 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=14.08;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:920,105,0 chrXII 607722 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=12.03;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:911,96,0 chrXII 607737 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=10.40;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:93:844,93,0 chrXII 607779 . T C 807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4618;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-0.490;QD=10.35;ReadPosRankSum=1.249;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:96:840,96,0 chrXII 607790 . T C 817 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=11.35;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:93:850,93,0 chrXII 607791 . T C 781 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=11.00;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:93:814,93,0 chrXII 607814 . A G 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=64;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.408;QD=11.37;ReadPosRankSum=2.373;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:87:761,87,0 chrXII 607922 . C T 983 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=18.20;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1016,108,0 chrXII 607923 . T C 935 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=17.64;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:968,108,0 chrXII 607998 . T G 1162 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.69;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1195,135,0 chrXII 608022 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.440;QD=20.90;ReadPosRankSum=1.674;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1266,141,0 chrXII 608102 . G A 1592 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.76;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1625,174,0 chrXII 608136 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.72;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1532,165,0 chrXII 608472 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5495;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.46;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1695,189,0 chrXII 608666 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=18.43;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1010,111,0 chrXII 608673 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=17.17;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:943,105,0 chrXII 608685 . T C 660 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=13.47;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:693,75,0 chrXII 608709 . A G 646 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=13.74;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:679,75,0 chrXII 608724 . C T 568 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=10.92;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:66:601,66,0 chrXII 608748 . G A 680 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.11;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:75:713,75,0 chrXII 609039 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.49;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1494,168,0 chrXII 609087 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.23;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1498,165,0 chrXII 609126 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.12;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1582,168,0 chrXII 609194 . T G 1504 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.12;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1537,174,0 chrXII 609213 . A G 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=5.166;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.226;QD=20.83;ReadPosRankSum=1.682;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1470,168,0 chrXII 609380 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.16;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2094,225,0 chrXII 609555 . A G 1792 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.06;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1825,201,0 chrXII 609559 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=3.872;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-1.039;QD=16.58;ReadPosRankSum=1.697;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:1724,195,0 chrXII 609572 . A G 1679 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1582;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=17.31;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1712,186,0 chrXII 609824 . G A 3028 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.62;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:3061,327,0 chrXII 609899 . T C 2394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.136;QD=20.82;ReadPosRankSum=1.612;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2427,273,0 chrXII 610109 . G A 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.056;QD=22.20;ReadPosRankSum=1.062;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2786,300,0 chrXII 610616 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=16.91;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1555,171,0 chrXII 610619 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.60;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1633,177,0 chrXII 610640 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=15.05;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1357,156,0 chrXII 610934 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.19;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1911,213,0 chrXII 611030 . C G 1891 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.12;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1924,210,0 chrXII 611078 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8087;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.70;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2427,273,0 chrXII 611179 . T C 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=68;Dels=0.00;FS=2.890;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.780;QD=19.32;ReadPosRankSum=2.377;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1347,153,0 chrXII 611203 . T C 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.139;DP=73;Dels=0.00;FS=9.152;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.012;QD=15.93;ReadPosRankSum=3.333;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:4,69:73:99:1196,132,0 chrXII 611769 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.77;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2068,222,0 chrXII 611779 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.51;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1828,207,0 chrXII 611812 . T A 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.866;QD=17.73;ReadPosRankSum=1.678;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1203,129,0 chrXII 611994 . A G 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.206;QD=18.51;ReadPosRankSum=1.688;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1495,165,0 chrXII 612183 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.750;QD=11.48;ReadPosRankSum=0.491;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:90:802,90,0 chrXII 612202 . A G 823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.6725;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.611;QD=11.12;ReadPosRankSum=1.681;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,68:74:99:856,99,0 chrXII 612238 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.06;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1125,123,0 chrXII 612263 . T A 1222 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.97;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1255,141,0 chrXII 612358 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.532;QD=22.77;ReadPosRankSum=1.666;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1217,138,0 chrXII 612475 . T G 1032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-1.341;QD=16.38;ReadPosRankSum=1.676;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1065,117,0 chrXII 612477 . G T 1041 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=16.79;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1074,117,0 chrXII 612516 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=1.906;QD=15.25;ReadPosRankSum=2.386;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1207,135,0 chrXII 612537 . A C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=0.449;QD=15.28;ReadPosRankSum=0.834;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1271,144,0 chrXII 612562 . T G 1205 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.26;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1238,141,0 chrXII 612564 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=18.98;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1286,144,0 chrXII 612600 . T C 1104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=75;Dels=0.00;FS=2.792;HaplotypeScore=4.2896;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.148;QD=14.72;ReadPosRankSum=2.384;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1137,129,0 chrXII 612630 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=14.55;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1168,129,0 chrXII 612708 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.41;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1687,192,0 chrXII 612784 . G T 1540 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.53;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1573,165,0 chrXII 613011 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.93;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2265,243,0 chrXII 613059 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=1.605;QD=18.18;ReadPosRankSum=1.690;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1560,174,0 chrXII 613218 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.51;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1754,201,0 chrXII 613380 . A C 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.163;QD=17.35;ReadPosRankSum=1.699;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1872,207,0 chrXII 613464 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=17.45;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1429,162,0 chrXII 613479 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=15.56;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1029,114,0 chrXII 613482 . T C 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.486;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=0.440;QD=14.83;ReadPosRankSum=1.674;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:908,102,0 chrXII 613846 . G A 915 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=16.05;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:948,102,0 chrXII 613848 . C G 838 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=15.24;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:871,99,0 chrXII 613851 . T C 823 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=14.96;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:856,93,0 chrXII 613857 . A G 775 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;QD=13.60;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:90:808,90,0 chrXII 613864 . C A 678 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=12.56;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:78:711,78,0 chrXII 613866 . C T 726 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=13.44;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:759,81,0 chrXII 613867 . C T 728 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=13.48;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:761,81,0 chrXII 613890 . C T 642 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=11.67;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:675,75,0 chrXII 613911 . T C 641 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=11.45;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:674,75,0 chrXII 613914 . T C 596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;MQRankSum=-0.866;QD=10.64;ReadPosRankSum=1.670;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:629,72,0 chrXII 614136 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=17.80;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:852,93,0 chrXII 614178 . G C 589 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.32;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:69:622,69,0 chrXII 614286 . C A 911 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=18.98;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:944,105,0 chrXII 614304 . A G 722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.113;DP=44;Dels=0.00;FS=3.029;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=1.888;QD=16.41;ReadPosRankSum=2.282;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:87:755,87,0 chrXII 614411 . A T 807 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.42;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:840,90,0 chrXII 614423 . G T 703 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.00;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:736,78,0 chrXII 614456 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.70;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:941,99,0 chrXII 614708 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.18;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1292,135,0 chrXII 614751 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.07;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1225,132,0 chrXII 616056 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1250,135,0 chrXII 619440 . A G 1587 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.67;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1620,186,0 chrXII 620192 . T C 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.391;QD=18.54;ReadPosRankSum=1.635;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1349,147,0 chrXII 620931 . T C 1543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=3.118;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.803;QD=18.59;ReadPosRankSum=1.648;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1576,171,0 chrXII 622344 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.38;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1276,135,0 chrXII 622365 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.76;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1365,144,0 chrXII 622969 . A G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.994;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.155;QD=24.93;ReadPosRankSum=1.675;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1529,165,0 chrXII 622999 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.24;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1371,159,0 chrXII 623137 . T C 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.591;QD=23.43;ReadPosRankSum=1.693;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2095,237,0 chrXII 623166 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.12;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2024,216,0 chrXII 623554 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.056;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.201;QD=22.14;ReadPosRankSum=1.696;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2136,237,0 chrXII 626422 . T A 750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=55;Dels=0.02;FS=14.828;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.680;QD=13.64;ReadPosRankSum=2.832;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:87:783,87,0 chrXII 626688 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.92;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1151,132,0 chrXII 627007 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.87;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1870,201,0 chrXII 627361 . C T 1120 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.662;QD=16.47;ReadPosRankSum=1.477;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1153,126,0 chrXII 627363 . T C 1129 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7652;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=1.306;QD=17.37;ReadPosRankSum=1.679;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1162,135,0 chrXII 627370 . G A 1034 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=14.36;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1067,120,0 chrXII 627375 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-1.050;QD=16.08;ReadPosRankSum=1.680;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1094,120,0 chrXII 627510 . T C 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.854;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.999;QD=19.12;ReadPosRankSum=1.651;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1658,183,0 chrXII 627774 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.39;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1235,141,0 chrXII 628215 . G T 1635 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.77;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1668,183,0 chrXII 628808 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.50;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:866,96,0 chrXII 629698 . T G 1303 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.16;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1336,147,0 chrXII 629914 . A G 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;DP=63;Dels=0.00;FS=4.014;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.292;QD=20.71;ReadPosRankSum=0.632;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1338,153,0 chrXII 629949 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.942;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5601;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.672;QD=20.96;ReadPosRankSum=1.611;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1228,135,0 chrXII 629974 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.31;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1168,132,0 chrXII 630314 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.29;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1413,156,0 chrXII 631313 . C G 1333 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.60;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1366,153,0 chrXII 632381 . A C 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.133;QD=17.67;ReadPosRankSum=1.689;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1464,162,0 chrXII 632835 . A T 925 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.02;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:958,102,0 chrXII 632986 . A G 1000 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.22;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1033,117,0 chrXII 633018 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1225,135,0 chrXII 633127 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.31;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1736,195,0 chrXII 633130 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=19.08;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1769,192,0 chrXII 633163 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=16.97;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,112:115:99:1985,216,0 chrXII 633180 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.29;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2021,216,0 chrXII 633316 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.45;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2282,246,0 chrXII 633355 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1936,219,0 chrXII 633477 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2942;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.24;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1852,210,0 chrXII 634219 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.48;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1638,171,0 chrXII 634488 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.66;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1289,141,0 chrXII 634506 . A C 1008 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.00;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1041,114,0 chrXII 634524 . C G 1220 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2691;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.48;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1253,144,0 chrXII 634602 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.72;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1525,165,0 chrXII 634860 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.70;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1463,162,0 chrXII 637236 . A T 3177 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.91;SB=-1.840e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3210,342,0 chrXII 639830 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.45;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1260,135,0 chrXII 640091 . C A 640 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.78;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:75:673,75,0 chrXII 640313 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.35;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1570,177,0 chrXII 641145 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=25.47;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2555,276,0 chrXII 641406 . A G 3539.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.832;QD=22.98;ReadPosRankSum=1.665;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3539,393,0 chrXII 641415 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=5.1500;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.09;SB=-1.765e+03 GT:AD:DP:GQ:PL 1/1:0,162:162:99:3579,390,0 chrXII 641496 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.65;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2304,255,0 chrXII 641499 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.1445;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2475,264,0 chrXII 641592 . A G 2448 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.75;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2481,282,0 chrXII 641607 . T C 2516 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.62;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2549,279,0 chrXII 641676 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=21.85;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2436,270,0 chrXII 641691 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.83;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2391,261,0 chrXII 641709 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.44;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1822,204,0 chrXII 642188 . T A 955 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.21;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:988,105,0 chrXII 642815 . A G 2243 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2276,255,0 chrXII 646705 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.41;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2088,228,0 chrXII 646754 . T C 2259 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4565;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.92;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2292,249,0 chrXII 646825 . T C 2377 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.85;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2410,270,0 chrXII 646878 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.03;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1428,153,0 chrXII 647017 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1631,174,0 chrXII 647095 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2263,249,0 chrXII 647752 . T C 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=5.601;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.130;QD=16.96;ReadPosRankSum=1.682;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1220,132,0 chrXII 647788 . T C 1517 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2927;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.14;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1550,174,0 chrXII 648649 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.39;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1946,213,0 chrXII 649837 . A G 3152 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3185,354,0 chrXII 656743 . A T 38.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=3.9760;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-0.937;QD=5.57;ReadPosRankSum=-1.754;SB=2.03 GT:AD:DP:GQ:PL 1/1:3,4:7:9:71,9,0 chrXII 657041 . G A 422 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.21;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:455,48,0 chrXII 657086 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=24.16;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1096,123,0 chrXII 657181 . A C 1711 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.22;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1744,198,0 chrXII 657234 . T G 958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-1.436;QD=11.27;ReadPosRankSum=1.690;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,81:85:99:991,114,0 chrXII 657258 . A G 1019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=5.677;HaplotypeScore=71.0080;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;MQRankSum=-1.691;QD=11.99;ReadPosRankSum=1.691;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1052,117,0 chrXII 657303 . A G 1555 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=15.87;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1588,180,0 chrXII 657332 . G C 1197 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.14;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1230,138,0 chrXII 657352 . C A 1298 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.37;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1331,141,0 chrXII 657492 . C G 2293 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.27;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2326,267,0 chrXII 657529 . G A 2521 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=21.36;SB=-1.581e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2554,273,0 chrXII 657531 . A C 2280 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=19.00;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2313,264,0 chrXII 657532 . T A 2366 SnpCluster AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=19.72;SB=-1.609e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2399,261,0 chrXII 657674 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=6.068;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.788;QD=20.35;ReadPosRankSum=2.869;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2068,231,0 chrXII 657708 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.03;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1620,177,0 chrXII 657750 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.45;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1725,192,0 chrXII 657914 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.70;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1855,204,0 chrXII 658158 . G A 2573 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.18;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2606,282,0 chrXII 658580 . C A 2437 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.98;SB=-1.556e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2470,261,0 chrXII 658599 . G T 2285 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.73;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2318,246,0 chrXII 660046 . T C 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.226;QD=25.22;ReadPosRankSum=1.682;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1773,195,0 chrXII 660294 . G T 1936 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.05;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1969,213,0 chrXII 662311 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.19;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1645,180,0 chrXII 662548 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.79;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2234,240,0 chrXII 662978 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1212,132,0 chrXII 663017 . T C 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=2.769;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.382;QD=20.00;ReadPosRankSum=2.181;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1133,126,0 chrXII 663332 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.93;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2152,234,0 chrXII 663890 . T C 1699 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=13.3071;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=15.31;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1732,192,0 chrXII 665220 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1641,180,0 chrXII 665409 . G A 1946 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.71;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1979,222,0 chrXII 668005 . T G 253.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.899;DP=58;Dels=0.00;FS=2.283;HaplotypeScore=48.4968;MLEAC=1;MLEAF=0.500;MQ=39.43;MQ0=0;MQRankSum=2.409;QD=4.36;ReadPosRankSum=-6.366;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:25,32:58:72:283,0,72 chrXII 668335 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.57;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1047,108,0 chrXII 669673 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.19;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1700,183,0 chrXII 669680 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.39;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1459,162,0 chrXII 669768 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.3493;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.61;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1200,135,0 chrXII 669860 . C G 98.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;DP=77;Dels=0.00;FS=5.233;HaplotypeScore=13.3691;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=0;MQRankSum=0.432;QD=1.28;ReadPosRankSum=-4.357;SB=-6.440e-01 GT:AD:DP:GQ:PL 0/1:67,10:77:5:128,0,5 chrXII 669881 . G A 665 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=51.3708;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=7.47;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,86:89:75:698,75,0 chrXII 669920 . G T 1711 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=14.75;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1744,186,0 chrXII 670460 . C G 951 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:984,108,0 chrXII 670795 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.07;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:575,60,0 chrXII 670933 . G A 503 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.12;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:57:536,57,0 chrXII 671112 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.96;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:680,75,0 chrXII 671310 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1020,111,0 chrXII 671563 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.37;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2066,228,0 chrXII 671669 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.02;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1450,159,0 chrXII 671956 . A C 1562 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.82;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1595,183,0 chrXII 672202 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.15;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1484,162,0 chrXII 673884 . C A 1824 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=5.9467;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.71;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1857,198,0 chrXII 675142 . A G 1385 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.0296;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.31;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1418,159,0 chrXII 675263 . G C 2198 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.90;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2231,243,0 chrXII 675407 . C T 972 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=16.47;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1005,114,0 chrXII 675925 . A G 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=4.210;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.533;QD=23.93;ReadPosRankSum=1.692;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:2139,243,0 chrXII 675961 . C G 2380 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.45;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2413,267,0 chrXII 676076 . G C 2539 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.70;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,111:117:99:2572,282,0 chrXII 676308 . C A 2856 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.85;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2889,312,0 chrXII 676548 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2051,216,0 chrXII 676712 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.4208;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.24;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1976,210,0 chrXII 676729 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=16.90;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1520,162,0 chrXII 676730 . A G 1358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.109;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-1.202;QD=15.98;ReadPosRankSum=1.691;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1391,159,0 chrXII 676885 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.85;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1946,210,0 chrXII 677005 . A G 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.228;QD=21.45;ReadPosRankSum=1.641;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1663,183,0 chrXII 677132 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.48;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,87:90:99:2056,216,0 chrXII 677164 . A G 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=5.933;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.449;QD=19.62;ReadPosRankSum=2.886;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1583,180,0 chrXII 677198 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.60;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1825,201,0 chrXII 677323 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.84;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1325,147,0 chrXII 677359 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=15.89;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1352,150,0 chrXII 677383 . T C 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.989;QD=12.90;ReadPosRankSum=2.393;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1142,126,0 chrXII 677389 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=12.16;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1115,120,0 chrXII 677402 . C G 797 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=10.77;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:93:830,93,0 chrXII 677445 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.56;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1759,189,0 chrXII 677545 . A G 2343 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.97;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2376,267,0 chrXII 677699 . T G 2353 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.01;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2386,273,0 chrXII 677763 . T A 2351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.520;QD=23.51;ReadPosRankSum=1.697;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2384,255,0 chrXII 677890 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.09;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1520,165,0 chrXII 677900 . T C 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.650;QD=16.69;ReadPosRankSum=1.691;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1435,156,0 chrXII 678194 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.16;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1983,216,0 chrXII 678531 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.56;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1441,150,0 chrXII 678541 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.59;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1424,153,0 chrXII 678658 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.17;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1566,168,0 chrXII 678751 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.00;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1382,153,0 chrXII 678793 . C G 950 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.10;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:983,111,0 chrXII 678817 . T A 743 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.51;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:776,87,0 chrXII 678971 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.62;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1521,162,0 chrXII 679175 . A C 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.091;QD=17.80;ReadPosRankSum=1.689;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1475,168,0 chrXII 679564 . A C 2150 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.48;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2183,243,0 chrXII 680346 . T C 1284 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.88;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1317,147,0 chrXII 680364 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=16.39;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1279,138,0 chrXII 680974 . A G 879 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7165;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=14.41;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:912,105,0 chrXII 681563 . A G 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=2.607;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.595;QD=19.53;ReadPosRankSum=2.249;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1947,213,0 chrXII 681614 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1782,189,0 chrXII 681851 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1966,225,0 chrXII 682248 . A C 1585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.380;QD=19.57;ReadPosRankSum=2.389;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1618,183,0 chrXII 682743 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.92;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2050,216,0 chrXII 682830 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.23;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1437,153,0 chrXII 682839 . C A 1704 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.81;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1737,183,0 chrXII 683405 . T C 907 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.90;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:940,105,0 chrXII 683462 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.33;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:709,78,0 chrXII 683798 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.70;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1248,135,0 chrXII 683858 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.37;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1174,135,0 chrXII 683870 . G A 926 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.84;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:959,108,0 chrXII 684068 . T G 2377 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.41;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2410,264,0 chrXII 684167 . T C 1766 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.80;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1799,201,0 chrXII 685720 . A G 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.01;FS=5.016;HaplotypeScore=7.3923;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.163;QD=17.49;ReadPosRankSum=1.542;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1327,144,0 chrXII 685721 . A T 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.708;QD=19.76;ReadPosRankSum=1.683;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1436,150,0 chrXII 685853 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2382,264,0 chrXII 686270 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=89;Dels=0.00;FS=12.483;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.151;QD=18.20;ReadPosRankSum=2.919;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,84:89:99:1653,180,0 chrXII 686636 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1890,201,0 chrXII 686785 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.42;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1554,165,0 chrXII 686789 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.42;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1483,165,0 chrXII 687226 . A G 1213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.662;QD=17.58;ReadPosRankSum=2.379;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1246,138,0 chrXII 687816 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2000,213,0 chrXII 687967 . T C 1369 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.06;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1402,156,0 chrXII 687973 . A C 1368 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.00;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1401,156,0 chrXII 687986 . A C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.868;DP=72;Dels=0.00;FS=3.778;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.326;QD=19.40;ReadPosRankSum=2.005;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1430,138,0 chrXII 688522 . C T 645 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=12.17;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:72:678,72,0 chrXII 689216 . G T 1022 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1055,111,0 chrXII 689719 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1182,126,0 chrXII 689904 . T C 801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.520;QD=16.35;ReadPosRankSum=1.662;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:96:834,96,0 chrXII 690162 . T C 1101 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.02;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1134,126,0 chrXII 690280 . A G 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=59;Dels=0.00;FS=7.214;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.026;QD=20.14;ReadPosRankSum=2.199;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1221,138,0 chrXII 690322 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=4.5051;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.92;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1328,141,0 chrXII 690370 . A C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.3596;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.979;QD=20.75;ReadPosRankSum=0.326;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1465,146,0 chrXII 690760 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3192;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.22;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1788,189,0 chrXII 691485 . T A 1265 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.2425;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.19;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1298,141,0 chrXII 691605 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.18;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1466,162,0 chrXII 691866 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.273;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.134;QD=22.64;ReadPosRankSum=2.366;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,86:88:99:2025,228,0 chrXII 692181 . T C 1567 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1600,177,0 chrXII 692970 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.27;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1675,183,0 chrXII 694048 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.83;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1970,207,0 chrXII 694126 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.76;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1080,114,0 chrXII 694211 . C T 915 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.32;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:948,102,0 chrXII 694318 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.76;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1717,180,0 chrXII 694377 . C T 1754 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.49;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1787,195,0 chrXII 694400 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.21;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1704,189,0 chrXII 694826 . A T 818 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.97;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:851,96,0 chrXII 694841 . T C 690 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.71;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:78:723,78,0 chrXII 694845 . C A 607 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.58;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:640,69,0 chrXII 694895 . G C 925 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.13;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:958,111,0 chrXII 694939 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.13;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1574,177,0 chrXII 694951 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.64;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1977,225,0 chrXII 694982 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.65;SB=-1.721e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3046,327,0 chrXII 695020 . T C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.477;QD=22.09;ReadPosRankSum=1.704;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2728,309,0 chrXII 695163 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.74;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1215,135,0 chrXII 695498 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.77;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1861,210,0 chrXII 695817 . C T 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.761;QD=21.13;ReadPosRankSum=-0.372;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2294,249,0 chrXII 696350 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.44;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2143,237,0 chrXII 696449 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.17;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1388,147,0 chrXII 696795 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=78;Dels=0.00;FS=8.079;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.371;QD=18.86;ReadPosRankSum=3.341;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1504,171,0 chrXII 696915 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.75;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1529,168,0 chrXII 696990 . T C 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=8.193;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.419;QD=20.37;ReadPosRankSum=2.296;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1011,111,0 chrXII 697086 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.92;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1244,132,0 chrXII 697660 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.04;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1736,192,0 chrXII 697759 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1660,180,0 chrXII 698944 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=14.4734;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.69;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2019,213,0 chrXII 699067 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.30;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2265,258,0 chrXII 699518 . T C 2567 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.04;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2600,294,0 chrXII 699550 . G A 2792 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.64;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2825,312,0 chrXII 699817 . G C 1661 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.07;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1694,186,0 chrXII 699895 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=21.72;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1575,171,0 chrXII 701265 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.33;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1705,186,0 chrXII 701484 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.58;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1336,150,0 chrXII 701793 . A T 1245 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.54;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1278,138,0 chrXII 701865 . A G 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.059;DP=76;Dels=0.00;FS=5.286;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.547;QD=14.92;ReadPosRankSum=3.338;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1167,132,0 chrXII 702363 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.17;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1496,165,0 chrXII 702384 . T C 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.418;QD=22.69;ReadPosRankSum=1.673;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1349,150,0 chrXII 702474 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1285,141,0 chrXII 702585 . C G 2295 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.07;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2328,261,0 chrXII 702788 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.41;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2632,288,0 chrXII 702990 . T C 1731 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.67;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1764,201,0 chrXII 703275 . T G 1526 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3143;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.61;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1559,177,0 chrXII 703329 . G C 1346 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.04;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1379,153,0 chrXII 703539 . T A 1417 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.15;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1450,156,0 chrXII 703572 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.71;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1905,210,0 chrXII 703659 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.76;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2167,243,0 chrXII 704697 . A C 1191 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.1239;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.85;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1224,144,0 chrXII 704793 . A G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=4.379;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.217;QD=21.09;ReadPosRankSum=1.685;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1615,183,0 chrXII 704823 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.41;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1666,180,0 chrXII 704829 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.13;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1697,183,0 chrXII 705191 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.7256;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.82;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1995,222,0 chrXII 705209 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.26;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1622,180,0 chrXII 705221 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.09;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1625,171,0 chrXII 705383 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.75;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1838,207,0 chrXII 705704 . A G 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.590;DP=91;Dels=0.00;FS=5.812;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.633;QD=20.86;ReadPosRankSum=2.856;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1931,213,0 chrXII 706055 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.50;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2396,270,0 chrXII 706906 . T C 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.737;QD=21.72;ReadPosRankSum=1.692;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1923,216,0 chrXII 706966 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.73;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1769,198,0 chrXII 707171 . C T 1360 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.05;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1393,150,0 chrXII 708200 . T C 1678 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0820;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.44;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1711,186,0 chrXII 708425 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.57;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1780,189,0 chrXII 708469 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.02;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2195,243,0 chrXII 708799 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8198;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.39;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1642,174,0 chrXII 708955 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.20;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1891,201,0 chrXII 709384 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.01;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1816,207,0 chrXII 710068 . C A 1149 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1182,123,0 chrXII 710116 . A G 782 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:90:815,90,0 chrXII 710493 . A T 1574 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.99;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1607,174,0 chrXII 710558 . A G 2080 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.39;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2113,240,0 chrXII 710894 . C G 1928 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.96;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1961,222,0 chrXII 711504 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.53;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:909,102,0 chrXII 711531 . C A 942 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=15.44;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:975,108,0 chrXII 711540 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.95;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1101,120,0 chrXII 711837 . T G 1059 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.06;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1092,123,0 chrXII 712274 . C T 803 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=13.84;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:90:836,90,0 chrXII 712275 . C T 806 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=12.79;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:90:839,90,0 chrXII 712958 . C T 608 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.43;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:69:641,69,0 chrXII 712990 . A C 936 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.40;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:969,108,0 chrXII 713021 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.124;QD=21.68;ReadPosRankSum=1.672;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1269,144,0 chrXII 713393 . G C 2391 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.94;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2424,270,0 chrXII 713485 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2009,219,0 chrXII 714368 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.25;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1785,195,0 chrXII 714407 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.38;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2084,237,0 chrXII 714439 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.31;SB=-1.827e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2669,282,0 chrXII 714641 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.11;SB=-1.761e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2889,321,0 chrXII 715038 . C T 3046 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.37;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:3079,336,0 chrXII 715262 . G A 2205 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.71;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2238,237,0 chrXII 715595 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.72;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1771,201,0 chrXII 715622 . A T 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=95;Dels=0.00;FS=16.455;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.502;QD=20.57;ReadPosRankSum=3.267;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1987,219,0 chrXII 715955 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.54;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2552,276,0 chrXII 716177 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.23;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1795,192,0 chrXII 716399 . C T 1707 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.61;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1740,186,0 chrXII 716543 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2066,228,0 chrXII 716594 . T C 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.000;QD=22.00;ReadPosRankSum=1.689;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1837,210,0 chrXII 716675 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.49;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1516,168,0 chrXII 716763 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2049;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1829,198,0 chrXII 717136 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:66:627,66,0 chrXII 717949 . G C 915 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.60;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:948,102,0 chrXII 718154 . A G 702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.762;QD=14.04;ReadPosRankSum=1.663;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:84:735,84,0 chrXII 718515 . A G 964 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.95;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:997,114,0 chrXII 720053 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.72;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1988,213,0 chrXII 720526 . T A 2230 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=17.84;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2263,243,0 chrXII 720538 . A T 1933 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=15.46;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1966,228,0 chrXII 720539 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.14;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2193,234,0 chrXII 721200 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.23;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:890,102,0 chrXII 721257 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.4409;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.98;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1153,123,0 chrXII 721681 . T C 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=9.108;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.114;QD=18.31;ReadPosRankSum=2.324;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:84:747,84,0 chrXII 721727 . T C 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.687;QD=21.17;ReadPosRankSum=1.677;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1367,150,0 chrXII 721788 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1843,201,0 chrXII 722023 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.04;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1556,177,0 chrXII 722850 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=14.01;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1042,111,0 chrXII 723283 . G C 889 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=15.60;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:922,102,0 chrXII 723463 . T C 381 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=11.21;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:414,45,0 chrXII 723465 . G A 431 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=11.34;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:51:464,51,0 chrXII 723809 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.44;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1148,123,0 chrXII 723945 . A G 721 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.53;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:87:754,87,0 chrXII 724534 . A G 674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.225;QD=16.44;ReadPosRankSum=1.479;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:707,81,0 chrXII 725217 . C A 2354 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.21;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2387,255,0 chrXII 725405 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.94;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1897,201,0 chrXII 725538 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=16.15;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1309,141,0 chrXII 725547 . T A 1226 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=15.92;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1259,138,0 chrXII 725578 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=6.295;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.742;QD=17.79;ReadPosRankSum=1.591;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1776,198,0 chrXII 725609 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.6618;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.46;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2621,285,0 chrXII 725625 . C T 3137 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.73;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,158:159:99:3170,339,0 chrXII 725693 . A T 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2592;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.351;QD=21.48;ReadPosRankSum=1.700;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2396,261,0 chrXII 725936 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.89;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2441,264,0 chrXII 726133 . C T 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.64;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1292,138,0 chrXII 726161 . C G 1462 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.76;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1495,168,0 chrXII 726449 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.27;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1458,159,0 chrXII 727328 . A G 1038 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.35;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1071,120,0 chrXII 727539 . T C 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7644;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.737;QD=22.09;ReadPosRankSum=1.692;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1955,216,0 chrXII 727688 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=10.470;HaplotypeScore=8.7292;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.022;QD=23.54;ReadPosRankSum=1.688;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1893,219,0 chrXII 727745 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.14;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1940,210,0 chrXII 728082 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.72;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1539,165,0 chrXII 728790 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.30;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1474,159,0 chrXII 728808 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.73;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1434,153,0 chrXII 729050 . T C 1255 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.57;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1288,147,0 chrXII 729242 . T C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2303;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.597;QD=18.14;ReadPosRankSum=1.687;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1430,159,0 chrXII 729605 . G T 2192 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8037;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.92;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2225,243,0 chrXII 729962 . T C 1715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.536;QD=20.18;ReadPosRankSum=1.650;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1748,195,0 chrXII 730762 . T A 1202 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.49;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1235,135,0 chrXII 730778 . G A 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=3.724;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.522;QD=18.63;ReadPosRankSum=-1.155;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1300,138,0 chrXII 731012 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.62;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2325,246,0 chrXII 731466 . A C 1165 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.75;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1198,138,0 chrXII 731569 . A C 1391 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.59;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1424,159,0 chrXII 731664 . T C 962 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=19.63;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:995,114,0 chrXII 731668 . T A 834 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=19.86;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:867,99,0 chrXII 731669 . G A 826 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=20.15;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:859,99,0 chrXII 731671 . A T 793 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=19.34;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:96:826,96,0 chrXII 732073 . T C 2075 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.84;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2108,234,0 chrXII 732204 . T C 1089 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=19.11;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1122,126,0 chrXII 732212 . G T 1163 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=17.89;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1196,126,0 chrXII 732213 . A C 1118 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;MQRankSum=0.027;QD=16.94;ReadPosRankSum=1.679;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1151,129,0 chrXII 732435 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.21;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2254,240,0 chrXII 732494 . C A 2179 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=16.4618;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.75;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2212,237,0 chrXII 732947 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=109;Dels=0.00;FS=5.523;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.019;QD=19.62;ReadPosRankSum=2.916;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2172,246,0 chrXII 732967 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.65;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2116,228,0 chrXII 733837 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.00;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2035,216,0 chrXII 734038 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.57;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1576,177,0 chrXII 734067 . G C 1099 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=18.02;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1132,123,0 chrXII 734157 . A T 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.126;QD=18.80;ReadPosRankSum=1.682;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1330,150,0 chrXII 734172 . G T 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7200;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.495;QD=19.34;ReadPosRankSum=1.423;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,55:61:99:1213,129,0 chrXII 734176 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8572;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=20.20;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1164,123,0 chrXII 734238 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8564;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=20.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1779,195,0 chrXII 734268 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=19.78;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2090,228,0 chrXII 734286 . T A 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=126;Dels=0.00;FS=3.452;HaplotypeScore=10.0348;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=0.000;QD=20.78;ReadPosRankSum=1.704;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2651,291,0 chrXII 734442 . A G 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=5.619;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;MQRankSum=-0.838;QD=22.06;ReadPosRankSum=1.565;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1401,150,0 chrXII 734446 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=23.58;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1424,150,0 chrXII 734469 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=22.19;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1098,123,0 chrXII 734602 . C T 1198 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=13.77;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1231,135,0 chrXII 734608 . C A 872 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=11.32;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:905,102,0 chrXII 734612 . T G 809 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=10.51;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:96:842,96,0 chrXII 734628 . T C 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=11.572;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=1.274;QD=11.52;ReadPosRankSum=2.372;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:87:759,87,0 chrXII 734633 . G C 672 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=11.39;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:705,78,0 chrXII 734648 . C A 581 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=10.76;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:66:614,66,0 chrXII 734649 . A T 536 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=9.93;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:63:569,63,0 chrXII 734674 . G A 732 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=12.41;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:84:765,84,0 chrXII 734706 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=15.40;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1003,105,0 chrXII 734728 . T C 818 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=12.78;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:851,93,0 chrXII 734732 . T C 783 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.43;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:90:816,90,0 chrXII 734739 . C T 825 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=14.47;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:858,93,0 chrXII 734740 . A G 799 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=14.02;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:93:832,93,0 chrXII 734763 . C G 605 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=10.80;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:638,72,0 chrXII 734768 . A C 518 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;MQRankSum=0.985;QD=10.16;ReadPosRankSum=1.664;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:63:551,63,0 chrXII 734773 . G A 533 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=10.88;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:60:566,60,0 chrXII 734779 . T C 405 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=8.27;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:48:438,48,0 chrXII 734786 . A T 503 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=8.82;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:57:536,57,0 chrXII 735713 . A G 3221.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=155;Dels=0.00;FS=16.761;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.581;QD=20.78;ReadPosRankSum=3.402;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:4,151:155:99:3254,369,0 chrXII 735833 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.54;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2377,270,0 chrXII 736001 . A G 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=114;Dels=0.00;FS=2.937;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.450;QD=19.59;ReadPosRankSum=2.406;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,110:114:99:2266,255,0 chrXII 736088 . A G 3379.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.25;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3379,381,0 chrXII 736154 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=27.4158;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.73;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2444,264,0 chrXII 736586 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=20.3265;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.12;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:1,138:139:99:2969,318,0 chrXII 737761 . T A 2099 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.32;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2132,240,0 chrXII 737991 . C T 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=8.051;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.313;QD=17.36;ReadPosRankSum=-0.689;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1509,162,0 chrXII 738097 . G C 2596 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.38;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2629,288,0 chrXII 738125 . T C 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.8277;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.866;QD=19.57;ReadPosRankSum=1.701;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,111:116:99:2303,258,0 chrXII 739454 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.65;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2470,267,0 chrXII 739466 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.04;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2317,261,0 chrXII 739624 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1115,120,0 chrXII 739705 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.17;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1668,177,0 chrXII 739838 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.60;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2031,222,0 chrXII 739958 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.56;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1567,165,0 chrXII 740405 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.9091;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.39;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2236,240,0 chrXII 740813 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.58;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1580,174,0 chrXII 740924 . G C 1445 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.00;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1478,165,0 chrXII 741197 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.20;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2075,237,0 chrXII 741346 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.68;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1666,180,0 chrXII 741368 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.56;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1801,201,0 chrXII 741422 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8556;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.83;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1679,180,0 chrXII 741869 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1243,132,0 chrXII 741983 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0917;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.29;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1438,153,0 chrXII 742073 . T G 1088 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.92;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1121,126,0 chrXII 742088 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.577;QD=18.81;ReadPosRankSum=1.672;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1105,123,0 chrXII 742174 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.3497;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.27;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1964,213,0 chrXII 742352 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.45;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1581,168,0 chrXII 742787 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1179,132,0 chrXII 743013 . T A 1612 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.21;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1645,189,0 chrXII 743135 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1244,135,0 chrXII 743183 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1436,153,0 chrXII 743291 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1593,171,0 chrXII 743729 . T A 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=67;Dels=0.00;FS=3.078;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.703;QD=22.87;ReadPosRankSum=2.374;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1565,168,0 chrXII 743763 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.86;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1957,216,0 chrXII 744392 . T A 1629 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.87;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1662,186,0 chrXII 744483 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.57;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1370,153,0 chrXII 744489 . A C 1354 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.34;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1387,159,0 chrXII 744522 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=66;Dels=0.00;FS=2.598;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.954;QD=15.05;ReadPosRankSum=2.892;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:3,62:66:99:1026,114,0 chrXII 744885 . T A 785 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.26;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:818,90,0 chrXII 745096 . G A 718 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.44;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:751,81,0 chrXII 745185 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.45;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1231,129,0 chrXII 745324 . T C 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.098;QD=20.45;ReadPosRankSum=1.667;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1117,126,0 chrXII 745374 . T C 80.51 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=37.4619;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=1.79;SB=-2.526e+01 GT:AD:DP:GQ:PL 1/1:0,6:45:12:113,12,0 chrXII 745460 . A G 604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.00;FS=3.774;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.391;QD=18.87;ReadPosRankSum=1.621;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,30:32:72:637,72,0 chrXII 745544 . G C 1436 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1469,165,0 chrXII 745609 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.14;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1884,207,0 chrXII 745660 . C G 2251 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2284,252,0 chrXII 745706 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.91;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1970,213,0 chrXII 745922 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.83;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1658,189,0 chrXII 746036 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.32;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1828,195,0 chrXII 746593 . C T 3824.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=25.16;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3824,403,0 chrXII 747529 . G T 1628 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=21.14;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1661,177,0 chrXII 747751 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.03;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1763,186,0 chrXII 747799 . T A 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=64;Dels=0.00;FS=8.136;HaplotypeScore=8.1735;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.509;QD=21.70;ReadPosRankSum=2.333;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1422,153,0 chrXII 747877 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.10;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1679,186,0 chrXII 747976 . A G 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=5.611;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.666;QD=22.41;ReadPosRankSum=1.694;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2072,237,0 chrXII 748299 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8919;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.16;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1738,189,0 chrXII 748416 . A T 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=100;Dels=0.00;FS=6.990;HaplotypeScore=9.0679;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.849;QD=22.04;ReadPosRankSum=2.253;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2237,243,0 chrXII 749085 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.56;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:913,99,0 chrXII 749415 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.95;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1290,147,0 chrXII 749442 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.40;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1601,171,0 chrXII 749546 . T G 1466 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8747;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.81;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1499,174,0 chrXII 749793 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.08;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1865,207,0 chrXII 750087 . A G 963 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:996,111,0 chrXII 750669 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=5.274;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.516;QD=17.09;ReadPosRankSum=1.570;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1127,129,0 chrXII 750944 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.96;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1647,174,0 chrXII 750988 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.54;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1245,135,0 chrXII 751083 . G C 1058 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.24;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1091,123,0 chrXII 751110 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.195;QD=18.53;ReadPosRankSum=1.673;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1126,123,0 chrXII 751827 . A G 564 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=13.76;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:66:597,66,0 chrXII 752103 . C A 1039 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=26.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1072,111,0 chrXII 753525 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.55;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1702,189,0 chrXII 754049 . G A 717 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.92;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:84:750,84,0 chrXII 754651 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:931,99,0 chrXII 754846 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.78;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:989,108,0 chrXII 754978 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1939,216,0 chrXII 755245 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.724;QD=22.00;ReadPosRankSum=1.688;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1771,195,0 chrXII 755553 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1777;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.40;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1798,189,0 chrXII 755569 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.00;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1734,189,0 chrXII 755941 . A G 2179 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.57;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2212,252,0 chrXII 756137 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2456,267,0 chrXII 756805 . T A 1124 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.48;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1157,126,0 chrXII 757090 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8814;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.67;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1489,165,0 chrXII 757131 . A G 2241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=3.957;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.161;QD=22.87;ReadPosRankSum=1.696;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2274,252,0 chrXII 757478 . T A,G 651.14 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.881;HaplotypeScore=3.7164;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.01;MQ0=0;MQRankSum=-0.912;QD=8.57;ReadPosRankSum=1.641;SB=-7.011e+02 GT:AD:DP:GQ:PL 1/2:1,36,39:76:42:711,114,42,596,0,581 chrXII 758451 . A C 2363 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.29;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2396,270,0 chrXII 758744 . T C 1377 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.00;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1410,159,0 chrXII 758853 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8847;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.57;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1794,189,0 chrXII 759162 . A G 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.100;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.884;QD=21.20;ReadPosRankSum=1.662;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1072,126,0 chrXII 759452 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.67;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1087,120,0 chrXII 759842 . T C 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2829;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.140;QD=16.80;ReadPosRankSum=1.687;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1310,147,0 chrXII 759860 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.46;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1084,120,0 chrXII 759872 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=13.24;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:973,105,0 chrXII 759887 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6952;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=13.24;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1066,114,0 chrXII 759985 . A G 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=81;Dels=0.00;FS=6.054;HaplotypeScore=11.0754;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.203;QD=20.54;ReadPosRankSum=2.887;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1697,186,0 chrXII 760163 . C G 953 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=19.85;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:986,111,0 chrXII 760396 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.08;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1672,186,0 chrXII 760502 . C A 768 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.33;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:801,90,0 chrXII 760719 . A T 1388 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.76;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1421,156,0 chrXII 760894 . A G 1221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.767;QD=20.02;ReadPosRankSum=1.675;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1254,144,0 chrXII 761052 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.02;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:935,99,0 chrXII 761066 . C G 897 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.61;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:930,105,0 chrXII 761118 . A T 1018 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.21;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1051,111,0 chrXII 761706 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.19;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1653,177,0 chrXII 762232 . G A 770 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.74;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:803,87,0 chrXII 762247 . A T 706 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.81;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:78:739,78,0 chrXII 762492 . A G 258 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.13;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:291,33,0 chrXII 763325 . A G 2182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.036;QD=20.98;ReadPosRankSum=1.637;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2215,252,0 chrXII 763412 . T C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.593;QD=20.61;ReadPosRankSum=1.685;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1558,171,0 chrXII 763502 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.75;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1396,159,0 chrXII 763742 . C T 3649.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.9634;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.01;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3649,396,0 chrXII 764481 . T C 2127 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.70;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2160,249,0 chrXII 764796 . T A 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.6447;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.657;QD=20.23;ReadPosRankSum=1.702;SB=-1.468e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2461,267,0 chrXII 764968 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.82;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1500,159,0 chrXII 765047 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.00;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1023,114,0 chrXII 765110 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.23;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1309,144,0 chrXII 765196 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3212;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.44;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1873,201,0 chrXII 765881 . A C 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=95;Dels=0.00;FS=2.575;HaplotypeScore=11.4854;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.074;QD=16.61;ReadPosRankSum=2.884;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1611,180,0 chrXII 765944 . A G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=87;Dels=0.00;FS=8.139;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.989;QD=20.20;ReadPosRankSum=2.393;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1790,204,0 chrXII 766039 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7225;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.72;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2017,222,0 chrXII 766135 . T C 2149 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.47;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2182,252,0 chrXII 766225 . T G 1212 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.87;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1245,138,0 chrXII 766489 . G A 489 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.9254;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=12.22;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:54:522,54,0 chrXII 767260 . C A 1663 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.17;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1696,183,0 chrXII 768581 . G C 1523 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.97;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1556,171,0 chrXII 768812 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.28;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1548,174,0 chrXII 769312 . G A 736 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:81:769,81,0 chrXII 770182 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.9545;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.96;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2080,231,0 chrXII 770488 . T G 2588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.117;QD=21.93;ReadPosRankSum=1.644;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2621,294,0 chrXII 770506 . G A 2878 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.84;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2911,309,0 chrXII 770842 . A T 2077 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.3026;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.91;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2110,234,0 chrXII 770890 . T A 1522 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=15.37;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1555,174,0 chrXII 771112 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.46;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1517,159,0 chrXII 771115 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.17;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1343,150,0 chrXII 771397 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5094;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.38;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2021,225,0 chrXII 771559 . G T 1880 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.38;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1913,210,0 chrXII 772478 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8407;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1631,174,0 chrXII 772635 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1401,153,0 chrXII 772740 . G T 1410 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.43;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1443,159,0 chrXII 773493 . A C 1127 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.12;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1160,129,0 chrXII 773668 . C G 1428 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.31;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1461,162,0 chrXII 773796 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.693;QD=19.70;ReadPosRankSum=1.694;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1806,207,0 chrXII 774096 . G C 1452 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.17;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1485,165,0 chrXII 774147 . A C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.313;QD=20.99;ReadPosRankSum=1.690;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1817,204,0 chrXII 774450 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.36;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1592,171,0 chrXII 774687 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.76;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1513,162,0 chrXII 774702 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.68;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1399,150,0 chrXII 774765 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.00;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:951,105,0 chrXII 774798 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.57;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1110,117,0 chrXII 774856 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=16.67;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:850,93,0 chrXII 775074 . G T 1584 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.29;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1617,174,0 chrXII 775104 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.68;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1572,177,0 chrXII 776349 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1757,198,0 chrXII 776626 . G A 2411 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2444,279,0 chrXII 776887 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.32;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1975,216,0 chrXII 777115 . T C 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=10.371;HaplotypeScore=7.9898;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.915;QD=18.92;ReadPosRankSum=2.916;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1603,180,0 chrXII 777814 . A G 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=61;Dels=0.00;FS=2.776;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.638;QD=19.31;ReadPosRankSum=2.368;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,58:61:99:1211,135,0 chrXII 777868 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.91;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1584,174,0 chrXII 779015 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.12;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1807,192,0 chrXII 779222 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.41;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1686,180,0 chrXII 779367 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.55;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1573,168,0 chrXII 779373 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=15.83;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1331,150,0 chrXII 780201 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=13.96;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:968,102,0 chrXII 780306 . A G 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.197;QD=17.58;ReadPosRankSum=2.340;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1211,138,0 chrXII 780315 . C G 1082 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.17;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1115,126,0 chrXII 780468 . A T 1331 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1364,147,0 chrXII 780550 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.619;QD=23.64;ReadPosRankSum=1.670;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1357,147,0 chrXII 780841 . A G 953 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:986,111,0 chrXII 781443 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=3.054;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-0.176;QD=19.60;ReadPosRankSum=2.396;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1817,201,0 chrXII 781458 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.67;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1997,210,0 chrXII 781630 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.69;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1005,108,0 chrXII 781631 . C G 971 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.34;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,52:56:99:1004,111,0 chrXII 781671 . T A 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-1.485;QD=14.09;ReadPosRankSum=1.299;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:90:822,90,0 chrXII 781674 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=15.61;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:829,87,0 chrXII 781840 . A T 1979 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.21;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2012,219,0 chrXII 782809 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;DP=62;Dels=0.00;FS=2.719;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.259;QD=18.76;ReadPosRankSum=2.331;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1196,118,0 chrXII 782815 . T C 1051 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.46;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1084,123,0 chrXII 782839 . A G 625 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=16.45;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:658,72,0 chrXII 782878 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=16.51;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1205,129,0 chrXII 782905 . G T 1717 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.87;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1750,183,0 chrXII 782987 . G A 2257 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=14.8149;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.72;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2290,249,0 chrXII 783116 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.75;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1762,189,0 chrXII 783123 . T C 1405 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.51;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1438,156,0 chrXII 783130 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.51;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:70:99:1259,135,0 chrXII 783530 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.50;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1581,171,0 chrXII 783557 . C T 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=48;Dels=0.00;FS=4.960;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.848;QD=20.23;ReadPosRankSum=1.659;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1004,108,0 chrXII 783750 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.69;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1644,180,0 chrXII 783909 . G T 2075 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=22.31;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2108,231,0 chrXII 784087 . T G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.927;QD=19.04;ReadPosRankSum=-0.157;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1918,222,0 chrXII 784121 . C T 1572 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.5619;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=16.04;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1605,180,0 chrXII 784144 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.45;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1377,150,0 chrXII 784173 . C A 886 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.34;MQ0=0;QD=11.07;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:96:919,96,0 chrXII 784196 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=11.25;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:922,99,0 chrXII 784218 . C A 760 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=10.41;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:793,84,0 chrXII 784219 . G A 763 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=0;QD=10.75;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:84:796,84,0 chrXII 784223 . C A 738 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=10.11;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:84:771,84,0 chrXII 784242 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=14.63;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1013,114,0 chrXII 784276 . A G 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.138;QD=15.11;ReadPosRankSum=1.683;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1091,123,0 chrXII 784477 . T A 1027 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.88;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1060,114,0 chrXII 784849 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=43.4929;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.85;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1117,126,0 chrXII 784902 . A G 711 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.75;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:744,84,0 chrXII 785038 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1442,156,0 chrXII 785227 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.06;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1401,153,0 chrXII 786167 . A G 1064 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.46;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1097,120,0 chrXII 786201 . G T 1051 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.81;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1084,117,0 chrXII 786213 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.45;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1045,117,0 chrXII 786288 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=17.49;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1887,204,0 chrXII 786298 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=5.6336;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.45;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2005,216,0 chrXII 786333 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=16.0127;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.38;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1545,171,0 chrXII 786375 . C T 825 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=14.73;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:858,96,0 chrXII 786421 . A G 278 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=6.95;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:36:311,36,0 chrXII 786429 . A C 330 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=7.86;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:363,42,0 chrXII 786436 . A G 330 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=7.33;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:42:363,42,0 chrXII 786439 . C T 349 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=7.76;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:39:382,39,0 chrXII 786447 . A G 389 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=8.84;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:48:422,48,0 chrXII 786562 . T C 1909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.917;QD=22.20;ReadPosRankSum=1.691;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1942,213,0 chrXII 786875 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.729;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.086;QD=19.73;ReadPosRankSum=1.674;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1217,135,0 chrXII 786949 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.15;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1484,168,0 chrXII 787097 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.16;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1274,144,0 chrXII 787246 . C G 722 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=17.19;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:755,87,0 chrXII 787306 . C T 854 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=17.43;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:887,102,0 chrXII 787307 . T A 871 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=17.78;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:904,102,0 chrXII 787382 . T C 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.389;QD=21.86;ReadPosRankSum=1.697;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2175,246,0 chrXII 787756 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2157,243,0 chrXII 788425 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.40;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1938,207,0 chrXII 788548 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=16.96;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1763,192,0 chrXII 788601 . C A 1164 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=12.12;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1197,129,0 chrXII 788615 . A G 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.00;FS=5.282;HaplotypeScore=4.5008;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-1.961;QD=10.91;ReadPosRankSum=3.316;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:4,96:100:99:1124,123,0 chrXII 788626 . A G 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-0.516;QD=10.44;ReadPosRankSum=1.695;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1014,114,0 chrXII 788638 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=10.90;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1014,114,0 chrXII 788663 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=71;Dels=0.00;FS=8.780;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-0.960;QD=11.75;ReadPosRankSum=3.329;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:96:867,96,0 chrXII 788967 . A G 2016 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=20.78;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2049,225,0 chrXII 788987 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.13;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2040,222,0 chrXII 789047 . A G 1616 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.46;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1649,183,0 chrXII 789072 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=18.84;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1578,171,0 chrXII 789096 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=14.69;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1135,123,0 chrXII 789125 . T G 682 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=12.18;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:81:715,81,0 chrXII 789130 . C T 522 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=47;Dels=0.00;FS=1.992;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=0.214;QD=11.11;ReadPosRankSum=-0.955;SB=-4.639e+02 GT:AD:DP:GQ:PL 1/1:4,43:47:60:555,60,0 chrXII 789131 . A G 488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.880;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=0.604;QD=10.38;ReadPosRankSum=0.017;SB=-4.338e+02 GT:AD:DP:GQ:PL 1/1:5,42:47:60:521,60,0 chrXII 789140 . A G 368 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.95;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:45:401,45,0 chrXII 789146 . T G 333 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DP=32;Dels=0.00;FS=2.013;HaplotypeScore=6.7437;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.655;QD=10.41;ReadPosRankSum=0.427;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:4,28:32:42:366,42,0 chrXII 789151 . C T 211.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=26;Dels=0.00;FS=6.226;HaplotypeScore=6.7437;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.963;QD=8.12;ReadPosRankSum=-1.204;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:3,23:26:27:244,27,0 chrXII 789152 . A G 239 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.973;DP=26;Dels=0.00;FS=3.078;HaplotypeScore=6.7437;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.433;QD=9.19;ReadPosRankSum=-1.203;SB=-2.208e+02 GT:AD:DP:GQ:PL 1/1:2,24:26:33:272,33,0 chrXII 789167 . T G 187.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.897;DP=18;Dels=0.00;FS=3.039;HaplotypeScore=2.9761;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.211;QD=10.39;ReadPosRankSum=-0.211;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:2,16:18:24:220,24,0 chrXII 789172 . C T 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DP=17;Dels=0.00;FS=12.335;HaplotypeScore=3.7647;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.537;QD=2.00;ReadPosRankSum=0.537;SB=-1.299e+01 GT:AD:DP:GQ:PL 0/1:7,10:17:64:64,0,86 chrXII 789173 . A G 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;DP=17;Dels=0.00;FS=12.335;HaplotypeScore=3.7647;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.830;QD=1.65;ReadPosRankSum=1.122;SB=-1.100e+01 GT:AD:DP:GQ:PL 0/1:7,10:17:58:58,0,94 chrXII 789175 . A G 56.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;DP=24;Dels=0.00;FS=7.915;HaplotypeScore=3.7647;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.175;QD=2.33;ReadPosRankSum=0.665;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:17,6:24:59:86,0,59 chrXII 789188 . T G 127.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.960;DP=24;Dels=0.00;FS=6.214;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.873;QD=5.30;ReadPosRankSum=2.706;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:3,21:24:18:160,18,0 chrXII 789193 . C T 158.06 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.87;SB=-2.451e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:21:191,21,0 chrXII 789194 . A G 169.03 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.35;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:24:202,24,0 chrXII 789209 . T G 233.45 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.968;DP=45;Dels=0.00;FS=8.164;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.065;QD=5.19;ReadPosRankSum=1.065;SB=-4.065e+02 GT:AD:DP:GQ:PL 1/1:5,40:45:7:265,7,0 chrXII 789217 . A G 269.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.263;DP=53;Dels=0.00;FS=8.141;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.472;QD=5.09;ReadPosRankSum=0.411;SB=-4.716e+02 GT:AD:DP:GQ:PL 1/1:5,48:53:11:302,11,0 chrXII 789230 . G T 370.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.988;DP=63;Dels=0.00;FS=8.152;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;MQRankSum=-0.445;QD=5.87;ReadPosRankSum=-2.174;SB=-6.358e+02 GT:AD:DP:GQ:PL 1/1:5,58:63:25:403,25,0 chrXII 789259 . A G 596 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.153;DP=83;Dels=0.00;FS=8.036;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;MQRankSum=-1.445;QD=7.18;ReadPosRankSum=1.254;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:5,78:83:47:629,47,0 chrXII 789264 . T C 525 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DP=76;Dels=0.00;FS=7.994;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;MQRankSum=-1.320;QD=6.91;ReadPosRankSum=3.310;SB=-6.766e+02 GT:AD:DP:GQ:PL 1/1:5,71:76:44:558,44,0 chrXII 789266 . G A 558 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=77;Dels=0.00;FS=8.076;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;MQRankSum=-0.093;QD=7.25;ReadPosRankSum=3.401;SB=-7.299e+02 GT:AD:DP:GQ:PL 1/1:5,72:77:46:591,46,0 chrXII 789268 . G A 556 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.470;DP=77;Dels=0.00;FS=8.076;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;MQRankSum=-0.031;QD=7.22;ReadPosRankSum=3.607;SB=-7.558e+02 GT:AD:DP:GQ:PL 1/1:5,72:77:42:589,42,0 chrXII 789269 . G A 553 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=78;Dels=0.00;FS=8.076;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;MQRankSum=0.341;QD=7.09;ReadPosRankSum=3.607;SB=-7.556e+02 GT:AD:DP:GQ:PL 1/1:5,72:78:43:586,43,0 chrXII 790301 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.63;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1085,123,0 chrXII 790397 . G T 1904 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.64;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1937,213,0 chrXII 790484 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.01;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2380,261,0 chrXII 790500 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.80;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2289,255,0 chrXII 790747 . C T 3227.04 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.05;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3260,345,0 chrXII 791350 . C T 2722 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.9388;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.43;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2755,297,0 chrXII 791497 . G T 2612 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.90;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2645,291,0 chrXII 792151 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.61;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1729,189,0 chrXII 792158 . A T 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.289;QD=21.81;ReadPosRankSum=1.684;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1603,174,0 chrXII 792203 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.28;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1481,162,0 chrXII 792320 . A G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.892;QD=22.32;ReadPosRankSum=1.680;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1506,165,0 chrXII 792606 . A G 1782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=3.115;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.619;QD=20.96;ReadPosRankSum=1.650;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1815,204,0 chrXII 792691 . C G 1437 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.42;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1470,168,0 chrXII 792985 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.20;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1143,126,0 chrXII 793555 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.60;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1875,207,0 chrXII 793681 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;QD=16.34;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1177,129,0 chrXII 793689 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=15.01;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1279,150,0 chrXII 793695 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;QD=15.17;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1383,156,0 chrXII 793723 . G A 973 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=11.58;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1006,108,0 chrXII 793724 . G T 888 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=10.96;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:921,111,0 chrXII 793732 . G C 1064 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=12.09;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1097,120,0 chrXII 793757 . G A 1074 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=11.43;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1107,117,0 chrXII 793773 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=13.56;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1199,129,0 chrXII 793785 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=13.83;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:946,105,0 chrXII 793850 . A T 1238 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.34;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1271,135,0 chrXII 794003 . T G 453 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=15.62;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:486,54,0 chrXII 794238 . T A 1560 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.00;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1593,171,0 chrXII 794427 . T A 2122 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.32;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2155,234,0 chrXII 795231 . A T 837 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=12.88;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:870,102,0 chrXII 795247 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.84;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,123,0 chrXII 795356 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.51;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1406,159,0 chrXII 796132 . T A 1197 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.02;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1230,132,0 chrXII 796621 . A T 2195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.500;HaplotypeScore=8.0321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.285;QD=23.60;ReadPosRankSum=1.695;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2228,240,0 chrXII 796719 . T C 2299 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.69;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2332,261,0 chrXII 796778 . G C 1482 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=14.82;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1515,168,0 chrXII 796782 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=14.04;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1423,156,0 chrXII 797055 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.48;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1764,186,0 chrXII 797103 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.210;QD=20.54;ReadPosRankSum=1.685;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1553,174,0 chrXII 797627 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.30;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1728,186,0 chrXII 798281 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.64;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:941,102,0 chrXII 798476 . C A 934 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.30;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:967,102,0 chrXII 798538 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.74;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1185,126,0 chrXII 798683 . A C 1379 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.8362;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.28;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:1412,162,0 chrXII 800672 . T G 1684 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.05;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1717,195,0 chrXII 801257 . A G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=3.057;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.083;QD=19.97;ReadPosRankSum=2.383;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1531,174,0 chrXII 801896 . A C 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=69;Dels=0.00;FS=2.919;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.340;QD=18.00;ReadPosRankSum=2.343;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1275,141,0 chrXII 802144 . C A 1208 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.79;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1241,132,0 chrXII 802287 . C T 688 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=15.29;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:721,78,0 chrXII 802510 . T A 280 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:33:313,33,0 chrXII 802668 . T C 1452 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.673;QD=25.03;ReadPosRankSum=1.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1485,168,0 chrXII 802767 . A G 1389 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=17.782;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.635;QD=23.15;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1422,165,0 chrXII 803022 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.33;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1966,225,0 chrXII 803175 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.9199;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.40;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1657,177,0 chrXII 803215 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=15.72;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1432,159,0 chrXII 803492 . G A 2799 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.04;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2832,306,0 chrXII 803684 . G A 2448 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.25;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2481,267,0 chrXII 803754 . T C 1900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.102;QD=21.59;ReadPosRankSum=1.693;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1933,216,0 chrXII 803775 . A C 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=101;Dels=0.00;FS=9.433;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.505;QD=18.11;ReadPosRankSum=2.930;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:3,97:101:99:1862,207,0 chrXII 803833 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5715;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.467;QD=16.02;ReadPosRankSum=2.365;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1427,162,0 chrXII 803865 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.12;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2306,249,0 chrXII 804031 . G A 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-0.627;QD=16.47;ReadPosRankSum=-0.221;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1598,168,0 chrXII 804054 . C G 1146 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=12.73;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1179,129,0 chrXII 804204 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.3517;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.04;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1548,171,0 chrXII 804368 . T A 1801 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.23;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1834,195,0 chrXII 804683 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.59;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1522,162,0 chrXII 804978 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1316,147,0 chrXII 805190 . A G 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=6.3853;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.353;QD=16.49;ReadPosRankSum=1.447;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1237,141,0 chrXII 805208 . A T 1461 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1223;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.49;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1494,159,0 chrXII 805433 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.09;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1158,129,0 chrXII 805437 . T G 1119 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.63;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1152,132,0 chrXII 805452 . T A 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.106;QD=18.08;ReadPosRankSum=1.662;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:937,99,0 chrXII 805710 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.82;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1517,171,0 chrXII 805896 . A G 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.099;QD=21.30;ReadPosRankSum=1.633;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1524,171,0 chrXII 806928 . G C 1660 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.78;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1693,189,0 chrXII 806972 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.18;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:838,99,0 chrXII 807178 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.82;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1334,141,0 chrXII 807344 . C A 1088 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.27;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1121,120,0 chrXII 807361 . T C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-0.080;QD=18.43;ReadPosRankSum=1.679;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1231,135,0 chrXII 807491 . G T 1351 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.47;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1384,150,0 chrXII 807496 . A G 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.941;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.152;QD=19.18;ReadPosRankSum=1.550;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1126,129,0 chrXII 807909 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.21;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1570,180,0 chrXII 808452 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1689,177,0 chrXII 808557 . A G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.444;QD=21.67;ReadPosRankSum=1.675;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1333,153,0 chrXII 808607 . G T 1105 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.42;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1138,123,0 chrXII 808623 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.07;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1357,144,0 chrXII 808708 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.310;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.847;QD=22.98;ReadPosRankSum=1.694;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2124,240,0 chrXII 809043 . A T 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.039;QD=19.96;ReadPosRankSum=1.689;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1630,183,0 chrXII 809077 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.44;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,168,0 chrXII 809078 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.30;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1588,171,0 chrXII 809919 . T C 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.4432;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-2.088;QD=20.84;ReadPosRankSum=2.384;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1617,183,0 chrXII 809989 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.07;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2657,282,0 chrXII 810333 . G C 1782 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.8854;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=16.50;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1815,198,0 chrXII 810518 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.9114;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=17.91;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1717,186,0 chrXII 810702 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.866;QD=21.24;ReadPosRankSum=1.689;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1732,192,0 chrXII 810731 . A G 1465 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.54;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1498,162,0 chrXII 810737 . A C 1344 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=18.93;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1377,156,0 chrXII 810740 . G A 1443 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.77;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1476,159,0 chrXII 810794 . C T 1207 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=19.79;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1240,135,0 chrXII 810821 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;QD=15.30;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1257,141,0 chrXII 810830 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=15.59;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1311,141,0 chrXII 810835 . A C 1242 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;QD=14.44;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1275,141,0 chrXII 810884 . G A 917 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.42;MQ0=0;QD=10.79;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:950,102,0 chrXII 810890 . C T 809 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=9.75;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:90:842,90,0 chrXII 810891 . C T 828 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=9.98;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:93:861,93,0 chrXII 810911 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=9.46;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:90:837,90,0 chrXII 810914 . C A 929 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=11.19;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:962,105,0 chrXII 810923 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=10.32;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:982,108,0 chrXII 811070 . T A 1338 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.84;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1371,153,0 chrXII 811166 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=20.61;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1352,153,0 chrXII 811178 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=39.36;MQ0=0;QD=19.33;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1328,144,0 chrXII 811301 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.2461;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=20.52;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1900,201,0 chrXII 811440 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=17.91;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1197,135,0 chrXII 811448 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=16.07;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:949,105,0 chrXII 811452 . C A 871 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=15.28;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:904,99,0 chrXII 811471 . A G 659 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=12.92;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:692,78,0 chrXII 811488 . T C 457 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=9.72;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:54:490,54,0 chrXII 811502 . C G 343 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.17;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:42:376,42,0 chrXII 811532 . G A 254 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=7.70;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:30:287,30,0 chrXII 811547 . C T 245 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.17;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,29:30:30:278,30,0 chrXII 811565 . T C 355 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.83;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:45:388,45,0 chrXII 811578 . C T 425 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.81;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:48:458,48,0 chrXII 811580 . A G 396 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.00;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:48:429,48,0 chrXII 811587 . A C 388 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.21;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:48:421,48,0 chrXII 811589 . A G 413 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.87;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:48:446,48,0 chrXII 811613 . T C 469 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=11.17;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:57:502,57,0 chrXII 811617 . A G 525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=1.356;QD=11.41;ReadPosRankSum=1.657;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,45:46:63:558,63,0 chrXII 811634 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;MQRankSum=0.025;QD=14.94;ReadPosRankSum=1.632;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1064,126,0 chrXII 811718 . T G 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.447;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=0.045;QD=20.74;ReadPosRankSum=1.461;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2418,273,0 chrXII 811754 . G T 1791 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2829;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=19.26;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1824,201,0 chrXII 811766 . G T 1601 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=19.52;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1634,180,0 chrXII 811802 . A C 608 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;QD=17.37;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:641,75,0 chrXII 811823 . A C 174.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=8.29;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,20:21:27:207,27,0 chrXII 811829 . C T 54.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.19;SB=-1.345e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:12:87,12,0 chrXII 811841 . G A 37.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=2.71;SB=-9.696e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:70,9,0 chrXII 811847 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;MQRankSum=0.505;QD=1.06;ReadPosRankSum=2.526;SB=-7.676e+01 GT:AD:DP:GQ:PL 1/1:3,12:15:6:47,6,0 chrXII 811862 . T C 163.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=0;QD=9.59;SB=-7.604e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:24:196,24,0 chrXII 811865 . A G 160.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=0;QD=9.41;SB=-7.704e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:24:193,24,0 chrXII 811883 . T C 185.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=10.28;SB=-1.010e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:218,27,0 chrXII 811886 . T C 187.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=10.39;SB=-9.902e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:27:220,27,0 chrXII 811904 . G C 253 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=14.88;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:286,33,0 chrXII 811925 . T G 319 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=18.76;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:352,42,0 chrXII 811934 . T C 327 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=18.17;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:360,42,0 chrXII 811952 . C T 304 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=16.89;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:337,39,0 chrXII 811955 . C T 283 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=14.15;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:36:316,36,0 chrXII 811961 . A G 359 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=16.32;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:392,45,0 chrXII 811967 . G A 345 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=15.68;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:378,39,0 chrXII 811979 . A G 309 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=14.05;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:342,39,0 chrXII 811991 . T C 469 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=14.21;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:502,57,0 chrXII 811997 . A G 457 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=12.35;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:490,54,0 chrXII 812015 . C T 482 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=11.21;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:515,60,0 chrXII 812018 . G A 551 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=13.12;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:63:584,63,0 chrXII 812024 . C G 524 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=12.19;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:63:557,63,0 chrXII 812027 . A G 515 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.98;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:60:548,60,0 chrXII 812039 . C T 649 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.81;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:72:682,72,0 chrXII 812048 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.98;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:69:656,69,0 chrXII 812084 . C T 638 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=13.29;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:78:671,78,0 chrXII 812093 . G C 692 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=16.09;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:725,84,0 chrXII 812105 . C T 675 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=15.34;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:708,78,0 chrXII 812108 . T C 632 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=7.404;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;MQRankSum=0.709;QD=14.36;ReadPosRankSum=1.654;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:78:665,78,0 chrXII 812114 . G T 658 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=15.67;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:691,78,0 chrXII 812138 . T C 538 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=14.16;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:571,66,0 chrXII 812141 . C A 588 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=0;QD=15.47;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:621,69,0 chrXII 812156 . A G 431 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;DP=35;Dels=0.00;FS=10.677;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;MQRankSum=-0.147;QD=12.31;ReadPosRankSum=2.799;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:3,32:35:51:464,51,0 chrXII 812162 . C T 390 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=11.82;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:423,45,0 chrXII 812165 . C T 403 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=12.59;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:436,48,0 chrXII 812174 . G A 403 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;QD=12.59;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:51:436,51,0 chrXII 812204 . T C 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=0.257;QD=18.20;ReadPosRankSum=1.668;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1016,117,0 chrXII 812219 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=17.58;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1035,120,0 chrXII 812225 . A G 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;MQRankSum=1.003;QD=17.04;ReadPosRankSum=0.091;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1004,114,0 chrXII 812294 . C A 252 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=4.94;SB=-9.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:33:285,33,0 chrXII 812303 . C T 240 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=6.32;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:30:273,30,0 chrXII 812306 . C T 227 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=5.82;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:30:260,30,0 chrXII 812312 . A G 194.01 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=5.11;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:27:227,27,0 chrXII 812321 . A G 193.01 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=5.22;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:27:226,27,0 chrXII 812348 . C T 124.13 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=4.00;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:18:157,18,0 chrXII 812354 . T C 97.26 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=3.24;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,29:30:15:130,15,0 chrXII 812369 . A G 69.51 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=2.57;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:12:102,12,0 chrXII 812399 . C T 117.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=5.32;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:150,18,0 chrXII 812411 . G C 151.06 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=6.87;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:21:184,21,0 chrXII 812423 . C T 108.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.41;SB=-2.728e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:141,15,0 chrXII 812429 . G A 138.13 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=5.53;SB=-2.814e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:171,18,0 chrXII 812456 . T C 220.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;MQRankSum=-0.140;QD=5.96;ReadPosRankSum=0.702;SB=-1.726e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:11:253,11,0 chrXII 812459 . C T 277 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=7.49;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:33:310,33,0 chrXII 812474 . G A 396 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=8.61;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:48:429,48,0 chrXII 812489 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=12.22;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:81:742,81,0 chrXII 812559 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=17.35;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1334,141,0 chrXII 812576 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=18.62;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:73:99:1392,159,0 chrXII 812690 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1686;MLEAC=2;MLEAF=1.00;MQ=36.08;MQ0=0;QD=18.42;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1378,150,0 chrXII 812741 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=18.10;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:956,105,0 chrXII 812762 . A C 1001 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=18.20;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1034,114,0 chrXII 812861 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=21.96;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1197,132,0 chrXII 812972 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=18.72;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1119,120,0 chrXII 813020 . T A 551 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=15.31;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:584,63,0 chrXII 813023 . A G 494 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=14.11;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:527,60,0 chrXII 813041 . G A 452 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=12.22;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:485,54,0 chrXII 813053 . G A 560 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.36;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:593,63,0 chrXII 813059 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.74;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:514,54,0 chrXII 813065 . A G 476 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.22;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:509,54,0 chrXII 813071 . C T 444 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.69;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:51:477,51,0 chrXII 813074 . A T 438 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.17;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:471,51,0 chrXII 813098 . T C 393 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=10.08;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:426,48,0 chrXII 813104 . G A 398 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.47;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:45:431,45,0 chrXII 813111 . T C 377 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=10.77;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:410,45,0 chrXII 813113 . G A 397 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=11.34;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:430,45,0 chrXII 813115 . C A 397 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=11.34;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:430,45,0 chrXII 813116 . T C 353 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=10.09;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:386,45,0 chrXII 813125 . G A 387 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.44;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:420,45,0 chrXII 813137 . C T 230.01 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=6.97;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:263,27,0 chrXII 813143 . C T 213.01 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=6.27;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:27:246,27,0 chrXII 813149 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=8.97;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:347,39,0 chrXII 813194 . C A 587 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=15.45;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:72:620,72,0 chrXII 813197 . G A 593 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=15.21;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:626,72,0 chrXII 813200 . T C 607 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.80;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:640,78,0 chrXII 813245 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=20.88;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1077,126,0 chrXII 813305 . C G 697 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=14.83;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:730,84,0 chrXII 813320 . C T 312 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=7.80;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:39:345,39,0 chrXII 813321 . T C 329 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.22;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:42:362,42,0 chrXII 813326 . A G 327 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;QD=8.38;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:42:360,42,0 chrXII 813333 . C T 231 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=5.50;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:264,30,0 chrXII 813338 . G A 237 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=5.51;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:30:270,30,0 chrXII 813350 . A T 414 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=7.96;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:51:447,51,0 chrXII 813409 . G A 936 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=16.14;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:969,105,0 chrXII 813413 . T C 904 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=15.59;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:937,105,0 chrXII 813425 . A C 971 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=15.17;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1004,114,0 chrXII 813488 . G C 1033 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.45;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1066,123,0 chrXII 813506 . T C 1037 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=17.88;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1070,120,0 chrXII 813533 . A G 586 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;QD=12.47;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:619,72,0 chrXII 813539 . G C 503 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=11.70;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:536,60,0 chrXII 813551 . T C 392 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=9.56;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:425,48,0 chrXII 813584 . G T 177.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=5.53;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:24:210,24,0 chrXII 813602 . G C 260 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=7.88;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:33:293,33,0 chrXII 813605 . T C 255 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=7.73;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:33:288,33,0 chrXII 813611 . C T 225 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=7.76;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:30:258,30,0 chrXII 813629 . C T 266 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.17;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:36:299,36,0 chrXII 813635 . A G 414 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.55;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:54:447,54,0 chrXII 813647 . G A 515 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=14.71;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:548,66,0 chrXII 813650 . T C 649 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=16.64;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:682,81,0 chrXII 813653 . A G 646 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=15.76;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:679,84,0 chrXII 813776 . T A 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=97;Dels=0.00;FS=10.466;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;MQRankSum=-0.615;QD=18.73;ReadPosRankSum=2.824;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1850,201,0 chrXII 813890 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=19.16;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1470,162,0 chrXII 813899 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=17.21;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1341,144,0 chrXII 813947 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=22.52;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1159,132,0 chrXII 813974 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=19.85;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:81:688,81,0 chrXII 813992 . G A 373 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=18.65;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:406,45,0 chrXII 814003 . A T 296 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=16.44;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:329,39,0 chrXII 814007 . A T 249 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=14.65;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:282,33,0 chrXII 814017 . G A 139.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.70;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:172,18,0 chrXII 814018 . T A 137.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.55;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:170,18,0 chrXII 814019 . T G 139.13 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.134;QD=10.70;ReadPosRankSum=1.203;SB=0.273 GT:AD:DP:GQ:PL 1/1:1,12:13:18:172,18,0 chrXII 814023 . A T 114.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.78;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:147,18,0 chrXII 814024 . T A 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.63;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:158,18,0 chrXII 814025 . T C 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.63;SB=-1.410e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:158,18,0 chrXII 814028 . G T 133.13 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.01;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:166,18,0 chrXII 814061 . G A 276 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.90;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:309,33,0 chrXII 814070 . T C 314 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.81;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:39:347,39,0 chrXII 814103 . C A 447 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.46;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:51:480,51,0 chrXII 814106 . C T 440 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.28;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:51:473,51,0 chrXII 814118 . T C 544 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.60;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:66:577,66,0 chrXII 814121 . T C 586 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.42;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:66:619,66,0 chrXII 814128 . C T 568 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.35;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:63:601,63,0 chrXII 814145 . A G 546 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.76;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:63:579,63,0 chrXII 814154 . C T 534 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.35;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:66:567,66,0 chrXII 814169 . C T 627 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=14.93;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:69:660,69,0 chrXII 814187 . A G 519 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=13.31;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:60:552,60,0 chrXII 814190 . C T 544 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=14.32;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:60:577,60,0 chrXII 814211 . G A 630 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=14.00;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:663,72,0 chrXII 814220 . C T 676 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=12.75;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:75:709,75,0 chrXII 814223 . C T 581 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;QD=9.85;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:66:614,66,0 chrXII 814289 . T C 726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;MQRankSum=-1.376;QD=10.68;ReadPosRankSum=0.357;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:87:759,87,0 chrXII 814292 . A C 707 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=10.55;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:84:740,84,0 chrXII 814307 . A G 715 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=11.00;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:748,87,0 chrXII 814313 . A G 730 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=30.26;MQ0=0;QD=12.37;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:763,87,0 chrXII 814325 . A G 622 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=10.72;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:75:655,75,0 chrXII 814328 . A G 605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.177;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=1.547;QD=10.80;ReadPosRankSum=1.670;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:72:638,72,0 chrXII 814337 . A G 520 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.40;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:553,60,0 chrXII 814346 . C A 519 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=9.27;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:552,63,0 chrXII 814379 . G A 418 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=7.60;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:51:451,51,0 chrXII 814391 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=6.92;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:48:441,48,0 chrXII 814394 . A G 270 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=5.09;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:36:303,36,0 chrXII 814421 . T C 203.01 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.14;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:27:236,27,0 chrXII 814427 . C A 205.01 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.18;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,49:49:27:238,27,0 chrXII 814440 . T C 207.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.14;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:240,27,0 chrXII 814442 . A G 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=4.00;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:27:233,27,0 chrXII 814445 . T C 202.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.74;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,54:54:27:235,27,0 chrXII 814466 . T C 121.13 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=3.11;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:18:154,18,0 chrXII 814472 . T C 122.13 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=3.49;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:18:155,18,0 chrXII 814481 . T C 123.13 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=3.85;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,32:32:18:156,18,0 chrXII 814496 . T C 114.13 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=3.80;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:147,18,0 chrXII 814499 . G A 117.13 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=4.34;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,27:27:18:150,18,0 chrXII 814511 . T C 106.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.83;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,22:22:15:139,15,0 chrXII 814514 . T C 108.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.289;QD=4.51;ReadPosRankSum=1.589;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:1,23:24:15:141,15,0 chrXII 814529 . A C 43.97 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.40;SB=-2.296e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:9:76,9,0 chrXII 814532 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.00;SB=-2.295e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:77,9,0 chrXII 814541 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.14;SB=-2.285e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:75,9,0 chrXII 814544 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.16;SB=-2.272e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:75,9,0 chrXII 814547 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=7.50;SB=-2.272e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:77,9,0 chrXII 814568 . T A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=8.00;SB=-2.272e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:80,9,0 chrXII 814571 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.76;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:50,6,0 chrXII 814572 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.57;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrXII 814574 . G A 157.06 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=14.28;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:190,21,0 chrXII 814577 . G A 215.01 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=15.36;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:248,27,0 chrXII 814586 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=16.12;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:420,48,0 chrXII 814658 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=20.64;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2076,225,0 chrXII 814820 . G T 2073 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;QD=23.03;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2106,225,0 chrXII 814871 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.00;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:93:852,93,0 chrXII 814889 . T C 410 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.64;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,20:22:54:443,54,0 chrXII 814904 . G A 251 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.73;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:284,33,0 chrXII 814910 . A T 221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;MQRankSum=-1.736;QD=14.73;ReadPosRankSum=1.504;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:30:254,30,0 chrXII 814919 . A G 232 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=13.65;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:265,30,0 chrXII 814937 . C T 308 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.40;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:341,36,0 chrXII 814955 . C A 331 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=13.79;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:39:364,39,0 chrXII 814958 . C T 332 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=13.28;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:42:365,42,0 chrXII 814964 . C G 361 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=12.89;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:394,45,0 chrXII 814970 . C T 357 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=11.16;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:45:390,45,0 chrXII 814988 . G A 619 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=14.40;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:652,72,0 chrXII 814991 . G A 658 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=14.62;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:691,75,0 chrXII 814994 . C T 671 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;QD=14.28;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:704,75,0 chrXII 814997 . C T 610 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=12.45;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:643,75,0 chrXII 815004 . G A 664 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=13.55;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:697,75,0 chrXII 815005 . T C 585 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=11.94;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:618,69,0 chrXII 815015 . A G 670 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.14;MQ0=0;QD=12.64;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:703,81,0 chrXII 815024 . C T 723 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=13.15;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:756,84,0 chrXII 815027 . T G 642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.177;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;MQRankSum=0.247;QD=11.46;ReadPosRankSum=1.670;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:78:675,78,0 chrXII 815036 . C T 771 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=13.77;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:804,87,0 chrXII 815052 . A G 730 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;QD=14.31;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:87:763,87,0 chrXII 815054 . T C 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.266;DP=52;Dels=0.00;FS=5.119;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;MQRankSum=-1.732;QD=13.54;ReadPosRankSum=1.666;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:84:737,84,0 chrXII 815063 . C T 678 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=12.33;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:711,81,0 chrXII 815069 . A G 643 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=0;MQRankSum=-1.732;QD=12.37;ReadPosRankSum=1.666;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:78:676,78,0 chrXII 815071 . C T 624 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=12.24;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:657,75,0 chrXII 815072 . G A 656 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=12.86;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:689,78,0 chrXII 815093 . T C 696 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=12.89;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:729,84,0 chrXII 815099 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=12.16;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:714,78,0 chrXII 815105 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=12.86;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:753,87,0 chrXII 815147 . T C 673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=8.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;MQRankSum=1.532;QD=12.94;ReadPosRankSum=1.666;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:81:706,81,0 chrXII 815156 . C T 686 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=14.00;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:81:719,81,0 chrXII 815162 . T A 749 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=17.83;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:782,84,0 chrXII 815168 . C T 755 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=17.98;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:788,84,0 chrXII 815171 . G A 716 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=16.27;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:78:749,78,0 chrXII 815189 . C T 599 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=16.19;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:69:632,69,0 chrXII 815192 . C T 490 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=12.56;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:60:523,60,0 chrXII 815198 . A T 449 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=12.14;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:482,54,0 chrXII 815204 . G A 417 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=11.27;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:450,48,0 chrXII 815210 . A T 399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=27.24;MQ0=0;MQRankSum=-1.288;QD=10.23;ReadPosRankSum=1.644;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:48:432,48,0 chrXII 815219 . A G 384 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=11.29;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:48:417,48,0 chrXII 815232 . C T 193.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=6.03;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:24:226,24,0 chrXII 815243 . G A 151.06 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;QD=4.87;SB=-3.201e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:21:184,21,0 chrXII 815249 . A G 168.03 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=5.79;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:201,24,0 chrXII 815254 . G T 156.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=6.24;SB=-2.371e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:189,21,0 chrXII 815255 . T C 125.13 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=5.01;SB=-2.281e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:18:158,18,0 chrXII 815258 . A G 151.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=6.04;SB=-2.031e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:184,21,0 chrXII 815261 . G A 155.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=6.20;SB=-2.401e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:188,21,0 chrXII 815264 . A G 145.06 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=5.80;SB=-2.261e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:21:178,21,0 chrXII 815270 . T C 89.26 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.72;SB=-9.327e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:122,15,0 chrXII 815271 . A C 95.26 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.97;SB=-9.327e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:128,15,0 chrXII 815273 . A C 97.26 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=4.05;SB=-9.227e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:15:130,15,0 chrXII 815276 . C T 100.26 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=3.46;SB=-9.427e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:15:133,15,0 chrXII 815300 . G C 181.01 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=4.64;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:27:214,27,0 chrXII 815303 . T C 163.03 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=3.62;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:24:196,24,0 chrXII 815324 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=9.33;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:72:621,72,0 chrXII 815357 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=12.74;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:925,111,0 chrXII 815377 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=17.70;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1166,135,0 chrXII 815401 . C G 921 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=19.19;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:954,114,0 chrXII 815424 . A C 721 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=17.17;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:754,90,0 chrXII 815463 . G T 340 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=10.00;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:42:373,42,0 chrXII 815466 . A C 327 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;MQRankSum=1.019;QD=9.62;ReadPosRankSum=1.631;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:1,33:34:42:360,42,0 chrXII 815472 . C A 311 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.52;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:344,39,0 chrXII 815474 . C G 308 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.41;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:341,39,0 chrXII 815475 . A G 313 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.59;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:346,39,0 chrXII 815477 . A C 297 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=11.00;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:39:330,39,0 chrXII 815480 . C G 316 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=10.90;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:349,39,0 chrXII 815486 . A T 259 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=9.59;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:292,33,0 chrXII 815496 . G A 186.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=7.16;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:219,24,0 chrXII 815497 . A C 176.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=6.77;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:209,24,0 chrXII 815498 . T A 177.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=6.81;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:210,24,0 chrXII 815555 . C G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=0.93;SB=-4.477e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:6:43,6,0 chrXII 815561 . G A 94.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.89;SB=-1.493e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:15:127,15,0 chrXII 815571 . C G 134.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=7.06;SB=-2.101e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:21:167,21,0 chrXII 815573 . A G 185.01 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.59;MQ0=0;QD=8.81;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:218,27,0 chrXII 815763 . C T 743 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2736;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=13.51;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:84:776,84,0 chrXII 815769 . T G 720 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=14.40;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:87:753,87,0 chrXII 815784 . T G 757 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=14.56;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:90:790,90,0 chrXII 815914 . C A 469 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.37;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:502,54,0 chrXII 816068 . A G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.732;QD=20.04;ReadPosRankSum=1.660;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:995,108,0 chrXII 816076 . G T 937 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.52;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:970,105,0 chrXII 816148 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.18;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:838,93,0 chrXII 816162 . T C 882 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.51;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:915,102,0 chrXII 816241 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.37;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1114,117,0 chrXII 816399 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.97;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1637,183,0 chrXII 816420 . A C 1425 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.65;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1458,165,0 chrXII 816867 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.90;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1356,147,0 chrXII 816962 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.82;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1782,186,0 chrXII 816966 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.75;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1791,195,0 chrXII 817177 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.90;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1865,198,0 chrXII 817207 . G C 1693 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.90;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1726,192,0 chrXII 817376 . T A 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.168;QD=23.19;ReadPosRankSum=1.695;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2190,234,0 chrXII 817463 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.20;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1300,141,0 chrXII 817589 . T C 1354 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.21;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1387,150,0 chrXII 817851 . G A 2024 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.44;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2057,225,0 chrXII 817863 . G C 1645 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=18.91;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1678,189,0 chrXII 817870 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=16.89;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1452,168,0 chrXII 817876 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=14.90;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1255,141,0 chrXII 817931 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=16.59;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1327,144,0 chrXII 817938 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=16.36;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1358,147,0 chrXII 817995 . T C 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.396;QD=21.00;ReadPosRankSum=1.633;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1503,165,0 chrXII 818018 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=20.83;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1866,210,0 chrXII 818041 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=18.60;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2265,249,0 chrXII 818046 . C A 2271 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=17.20;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2304,252,0 chrXII 818225 . T C 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=0;MQRankSum=-0.849;QD=10.73;ReadPosRankSum=1.698;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1127,123,0 chrXII 818228 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=0;QD=10.63;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1096,120,0 chrXII 818279 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6320;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=2;QD=11.75;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1161,132,0 chrXII 818374 . G T 1894 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.3358;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.87;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1927,213,0 chrXII 818454 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.09;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1417,156,0 chrXII 818710 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=21.07;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1613,180,0 chrXII 818735 . C A 1521 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=19.75;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1554,180,0 chrXII 818785 . T C 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=93;Dels=0.00;FS=2.853;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-1.245;QD=21.97;ReadPosRankSum=2.343;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:2076,228,0 chrXII 818811 . G T 1963 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.63;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1996,213,0 chrXII 818826 . T G 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.010;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.693;QD=18.19;ReadPosRankSum=1.697;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1852,210,0 chrXII 819031 . T A 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=2.958;HaplotypeScore=4.1421;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;MQRankSum=-1.777;QD=15.09;ReadPosRankSum=2.258;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:1964,210,0 chrXII 819035 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=4.6946;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=13.27;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:1798,198,0 chrXII 819282 . T A 2237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=124;Dels=0.00;FS=6.420;HaplotypeScore=12.0584;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.750;QD=18.04;ReadPosRankSum=2.370;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,122:124:99:2270,249,0 chrXII 819432 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1504;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.125;QD=19.94;ReadPosRankSum=1.661;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1987,219,0 chrXII 819681 . A G 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=104;Dels=0.00;FS=3.651;HaplotypeScore=7.4693;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.426;QD=20.50;ReadPosRankSum=-1.359;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2165,237,0 chrXII 819713 . C T 2302 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.72;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2335,252,0 chrXII 819834 . C G 2966 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.04;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2999,342,0 chrXII 820477 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.86;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1891,201,0 chrXII 820615 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.23;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1085,117,0 chrXII 820623 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.89;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1017,111,0 chrXII 820638 . C G 1084 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.02;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1117,123,0 chrXII 820696 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.41;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1275,141,0 chrXII 820890 . A G 2120 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.32;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2153,240,0 chrXII 821020 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.60;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1588,174,0 chrXII 821116 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.11;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1789,192,0 chrXII 821159 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.21;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1873,198,0 chrXII 821269 . A G 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=-0.609;QD=19.57;ReadPosRankSum=2.350;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:1990,222,0 chrXII 821272 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.500;QD=19.84;ReadPosRankSum=1.632;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2096,237,0 chrXII 822252 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.94;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1900,204,0 chrXII 822430 . A G 2531 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.4449;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2564,282,0 chrXII 822539 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2056,225,0 chrXII 822665 . C T 2979 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.69;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3012,330,0 chrXII 822741 . G A 2602 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.33;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,118:122:99:2635,285,0 chrXII 822768 . A C 2761 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.40;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,126:129:99:2794,312,0 chrXII 822847 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.06;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1697,189,0 chrXII 823065 . G T 1905 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.65;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1938,210,0 chrXII 823217 . G A 633 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.6550;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.78;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:666,72,0 chrXII 823314 . G A 449.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.267;QD=17.27;ReadPosRankSum=-0.267;SB=-1.727e-02 GT:AD:DP:GQ:PL 1/1:1,25:26:29:482,29,0 chrXII 823320 . T C 491 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.64;SB=-6.536e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:57:524,57,0 chrXII 823390 . G T 38.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=1.15;SB=-4.998e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:9:71,9,0 chrXII 824361 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.35;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1574,174,0 chrXII 824977 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.33;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1781,192,0 chrXII 825694 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=83;Dels=0.00;FS=3.064;HaplotypeScore=5.8864;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.881;QD=20.77;ReadPosRankSum=2.292;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,77:83:99:1757,195,0 chrXII 826102 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3292;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.31;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1713,189,0 chrXII 826108 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2794;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.36;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1717,183,0 chrXII 826674 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.79;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,129,0 chrXII 827901 . G A 3043 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.3455;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.29;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,174:176:99:3076,336,0 chrXII 827934 . A G 2711 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.94;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,159:160:99:2744,312,0 chrXII 828244 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.617;QD=20.31;ReadPosRankSum=1.653;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:1,86:90:99:1861,204,0 chrXII 828622 . T G 2780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=126;Dels=0.00;FS=5.914;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.848;QD=22.06;ReadPosRankSum=2.944;SB=-1.512e+03 GT:AD:DP:GQ:PL 1/1:3,123:126:99:2813,321,0 chrXII 828903 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.15;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1958,210,0 chrXII 828978 . T C 3050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.2410;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.333;QD=20.20;ReadPosRankSum=1.709;SB=-1.783e+03 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3083,351,0 chrXII 829413 . A G 158.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;DP=67;Dels=0.00;FS=10.992;HaplotypeScore=129.4174;MLEAC=1;MLEAF=0.500;MQ=42.29;MQ0=0;MQRankSum=3.233;QD=2.36;ReadPosRankSum=-0.890;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:49,18:67:36:188,0,36 chrXII 829419 . A G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;DP=83;Dels=0.00;FS=5.113;HaplotypeScore=63.4485;MLEAC=1;MLEAF=0.500;MQ=37.94;MQ0=0;MQRankSum=-0.495;QD=0.86;ReadPosRankSum=0.227;SB=-6.547e-03 GT:AD:DP:GQ:PL 0/1:74,9:83:49:101,0,49 chrXII 829425 . A G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.838;DP=95;Dels=0.00;FS=32.474;HaplotypeScore=85.7294;MLEAC=1;MLEAF=0.500;MQ=35.32;MQ0=0;MQRankSum=-0.844;QD=0.11;ReadPosRankSum=-5.130;SB=-2.060e+02 GT:AD:DP:GQ:PL 0/1:37,58:95:40:40,0,43 chrXII 829636 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.74;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2033,231,0 chrXII 829693 . G T 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.51;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,198,0 chrXII 830392 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.37;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1429,153,0 chrXII 830462 . T C 1907 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1526;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.930;QD=20.07;ReadPosRankSum=1.696;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1940,216,0 chrXII 830534 . G A 2005 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.7278;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2038,219,0 chrXII 830644 . T A 1064 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.44;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1097,117,0 chrXII 830647 . G T 1057 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.33;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1090,117,0 chrXII 830721 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.31;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1256,135,0 chrXII 830731 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=14.73;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1123,126,0 chrXII 830741 . T A 1251 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.64;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1284,138,0 chrXII 830945 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.3335;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.89;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1767,189,0 chrXII 831007 . T C 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.537;QD=21.95;ReadPosRankSum=2.345;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2096,234,0 chrXII 831036 . A T 1894 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.53;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1927,201,0 chrXII 831046 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=19.30;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1905,201,0 chrXII 831096 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=15.82;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1188,132,0 chrXII 831136 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.02;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:935,102,0 chrXII 831658 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1385,153,0 chrXII 833164 . T C 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.214;QD=21.37;ReadPosRankSum=1.693;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1935,216,0 chrXII 833281 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.63;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1601,168,0 chrXII 833500 . T C 2057 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2090,240,0 chrXII 833901 . A G 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.688;QD=20.44;ReadPosRankSum=1.688;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1648,192,0 chrXII 833957 . T A 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=4.702;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.062;QD=20.39;ReadPosRankSum=1.676;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1338,141,0 chrXII 834053 . A G 1207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.483;QD=19.79;ReadPosRankSum=1.619;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1240,141,0 chrXII 834108 . A G 1565 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.06;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1598,180,0 chrXII 835667 . A G 1707 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5640;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.97;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1740,192,0 chrXII 835692 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=17.96;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1434,153,0 chrXII 835791 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.64;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2046,231,0 chrXII 836293 . T A 934 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.58;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:967,102,0 chrXII 836590 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.56;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1197,135,0 chrXII 837543 . G A 394 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.15;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:48:427,48,0 chrXII 838789 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.80;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1697,192,0 chrXII 839086 . A G 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.417;QD=18.89;ReadPosRankSum=1.669;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1072,120,0 chrXII 839573 . C G 845 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.12;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:878,102,0 chrXII 839654 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.01;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1441,159,0 chrXII 839722 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.01;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1640,183,0 chrXII 839764 . C G 1660 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1693,183,0 chrXII 839881 . G A 46.97 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=0.70;SB=-2.221e+01 GT:AD:DP:GQ:PL 1/1:0,4:67:9:79,9,0 chrXII 839944 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=84;Dels=0.00;FS=9.866;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.935;QD=21.01;ReadPosRankSum=2.361;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1798,201,0 chrXII 840068 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=17.74;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:778,90,0 chrXII 840073 . T C 731 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=16.61;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:84:764,84,0 chrXII 840217 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.18;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1748,192,0 chrXII 840287 . T C 2283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=111;Dels=0.00;FS=3.940;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.541;QD=20.57;ReadPosRankSum=1.541;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,108:111:99:2316,238,0 chrXII 840577 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.81;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1499,168,0 chrXII 840682 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1442,159,0 chrXII 841816 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1038,117,0 chrXII 842170 . A G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.916;QD=19.76;ReadPosRankSum=2.301;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1337,147,0 chrXII 842770 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.88;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1524,168,0 chrXII 842932 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.97;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1669,177,0 chrXII 843106 . A G 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=72;Dels=0.00;FS=2.944;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.710;QD=17.40;ReadPosRankSum=2.380;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:2,68:72:99:1286,138,0 chrXII 843400 . T C 2355 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9834;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.09;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2388,267,0 chrXII 843685 . A G 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.010;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.2908;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.696;QD=21.84;ReadPosRankSum=1.624;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2130,240,0 chrXII 844293 . T C 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1299;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.094;QD=25.39;ReadPosRankSum=1.687;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1963,222,0 chrXII 844641 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.68;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2066,234,0 chrXII 845436 . T C 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.643;QD=23.11;ReadPosRankSum=1.643;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1859,207,0 chrXII 846071 . C T 1836 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.12;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1869,198,0 chrXII 846079 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.19;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1810,195,0 chrXII 846354 . C A 2364 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.51;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2397,267,0 chrXII 846577 . C T 2572 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.1911;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.91;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2605,279,0 chrXII 846636 . A G 2185 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.81;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2218,252,0 chrXII 846812 . T C 1846 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.67;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1879,204,0 chrXII 847269 . T C 1843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.260;QD=20.94;ReadPosRankSum=1.575;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1876,213,0 chrXII 848108 . G A 990 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1023,111,0 chrXII 848491 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.06;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1272,138,0 chrXII 849160 . C A 1332 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.14;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1365,144,0 chrXII 849290 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.26;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1840,204,0 chrXII 849445 . T G 300 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.79;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:333,36,0 chrXII 849515 . T C 522 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.40;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:60:555,60,0 chrXII 849610 . C G 757 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=63.65;MQ0=0;QD=18.92;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:40:87:790,87,0 chrXII 849924 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.29;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:956,105,0 chrXII 850042 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.05;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1731,186,0 chrXII 850264 . T C 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=2.821;HaplotypeScore=8.1585;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.009;QD=21.17;ReadPosRankSum=2.345;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2023,231,0 chrXII 850624 . G A 2297 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.44;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2330,243,0 chrXII 851089 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.00;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1497,168,0 chrXII 851314 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1695,186,0 chrXII 851512 . T A 1125 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.23;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1158,123,0 chrXII 852843 . A C 2132 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.76;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2165,246,0 chrXII 852960 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1477,156,0 chrXII 853103 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.62;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1538,168,0 chrXII 853264 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.371;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=10.0174;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.547;QD=19.48;ReadPosRankSum=1.670;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1124,126,0 chrXII 853402 . A G 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.578;QD=22.00;ReadPosRankSum=1.655;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1023,117,0 chrXII 853535 . G A 735 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:84:768,84,0 chrXII 853643 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.78;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1263,135,0 chrXII 854337 . T C 1698 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.22;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1731,195,0 chrXII 854467 . G T 2399 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.99;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2432,258,0 chrXII 854532 . A G 1210 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.61;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1243,141,0 chrXII 854613 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.88;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1280,132,0 chrXII 854761 . C T 2781 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.0053;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.17;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2814,309,0 chrXII 855144 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=20.95;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1772,198,0 chrXII 855154 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.414;QD=19.03;ReadPosRankSum=1.694;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1784,198,0 chrXII 855358 . T C 1140 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.81;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1173,129,0 chrXII 855577 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.62;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1676,177,0 chrXII 855718 . G C 1072 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.85;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1105,123,0 chrXII 856042 . T A 1867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.3541;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.294;QD=21.46;ReadPosRankSum=1.692;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1900,201,0 chrXII 856280 . T C 1644 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=20.05;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1677,183,0 chrXII 857000 . T A 1830 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=25.07;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1863,198,0 chrXII 857015 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.74;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1693,183,0 chrXII 857396 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2415,261,0 chrXII 857516 . A T 991 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.60;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1024,111,0 chrXII 857630 . G C 1096 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.36;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1129,120,0 chrXII 857745 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.37;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,91:95:99:2063,219,0 chrXII 858373 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1727,186,0 chrXII 858635 . A G 2076 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.32;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2109,240,0 chrXII 858994 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.11;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1870,201,0 chrXII 859118 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.07;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1719,189,0 chrXII 859243 . T C 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=4.437;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.624;QD=18.44;ReadPosRankSum=1.640;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1416,159,0 chrXII 859351 . G T 1179 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.98;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1212,129,0 chrXII 859355 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.33;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1273,135,0 chrXII 859566 . T G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=24.54;ReadPosRankSum=1.641;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1898,207,0 chrXII 859630 . A G 2579 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.80;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2612,285,0 chrXII 860031 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=14.91;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1539,168,0 chrXII 860038 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.90;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1583,171,0 chrXII 860211 . A G 1283 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.11;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1316,144,0 chrXII 860959 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.77;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2743,288,0 chrXII 861431 . T C 1890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=22.24;ReadPosRankSum=1.691;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1923,216,0 chrXII 861841 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.18;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1725,192,0 chrXII 862341 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=71;Dels=0.00;FS=8.295;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.187;QD=17.41;ReadPosRankSum=3.180;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1269,144,0 chrXII 862412 . T C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.814;QD=20.43;ReadPosRankSum=1.690;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1729,195,0 chrXII 864291 . A G 1885 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.6644;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.64;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1918,219,0 chrXII 864558 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.247;QD=20.53;ReadPosRankSum=1.608;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1778,201,0 chrXII 864606 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.00;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1876,210,0 chrXII 864723 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.03;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2236,243,0 chrXII 864768 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.38;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2262,252,0 chrXII 864795 . T C 2029 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6028;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=17.96;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,106:113:99:2062,237,0 chrXII 864999 . G T 1851 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.73;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1884,207,0 chrXII 865086 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.687;QD=20.79;ReadPosRankSum=1.687;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1655,183,0 chrXII 866118 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.87;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:993,108,0 chrXII 866136 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.85;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1169,126,0 chrXII 866286 . C A 735 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.85;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:768,87,0 chrXII 866370 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.43;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2095,225,0 chrXII 866496 . G T 1874 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.31;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1907,201,0 chrXII 866807 . C T 1667 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1700,180,0 chrXII 866895 . C T 969 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1002,111,0 chrXII 868519 . T A 628 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:661,75,0 chrXII 868618 . G A 456 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.00;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:489,51,0 chrXII 868737 . G A 585 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.73;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,31:33:69:618,69,0 chrXII 869859 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.76;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1578,168,0 chrXII 870168 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1069,117,0 chrXII 870213 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1342,147,0 chrXII 870633 . A G 2029 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.70;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2062,225,0 chrXII 870645 . T A 2062 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.62;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2095,228,0 chrXII 871504 . A G 1980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.661;DP=105;Dels=0.00;FS=6.129;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=18.86;ReadPosRankSum=2.874;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:3,101:105:99:2013,225,0 chrXII 871825 . A C 1581 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.64;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1614,177,0 chrXII 872180 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2189,243,0 chrXII 872805 . A T 1392 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=65.5102;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.62;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1425,153,0 chrXII 872886 . G T 1229 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=17.1003;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.20;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1262,138,0 chrXII 872981 . A G 1057 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.05;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1090,120,0 chrXII 873138 . A C 1950 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.68;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1983,222,0 chrXII 873300 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.83;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1882,198,0 chrXII 873372 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.37;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:63:554,63,0 chrXII 873725 . G C 1312 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1345,150,0 chrXII 874112 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.2950;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.28;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2361,252,0 chrXII 874247 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.0917;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.10;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1581,174,0 chrXII 874259 . T A 1559 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.79;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1592,168,0 chrXII 874433 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.99;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2046,225,0 chrXII 874541 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.30;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2509,276,0 chrXII 874655 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0986;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.16;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1505,171,0 chrXII 874812 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.099;QD=19.00;ReadPosRankSum=1.695;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1800,195,0 chrXII 874848 . T C 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.643;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.617;QD=22.01;ReadPosRankSum=1.703;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2630,294,0 chrXII 875066 . G C 957 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=18.76;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:990,111,0 chrXII 875323 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.56;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1089,120,0 chrXII 875363 . T C 742 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.82;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:775,84,0 chrXII 875489 . A T 250 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.04;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=9.62;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:30:283,30,0 chrXII 875507 . A G 422 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=14.07;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:51:455,51,0 chrXII 875602 . T C 798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;DP=46;Dels=0.00;FS=9.645;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.604;QD=17.35;ReadPosRankSum=3.177;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:4,42:46:93:831,93,0 chrXII 875793 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.25;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1624,174,0 chrXII 876120 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.01;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1651,177,0 chrXII 876507 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.11;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1912,213,0 chrXII 876714 . A G 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.685;QD=18.12;ReadPosRankSum=1.685;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1374,153,0 chrXII 876756 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.44;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2142,231,0 chrXII 876842 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.83;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1897,201,0 chrXII 877560 . T G 2330 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.19;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2363,261,0 chrXII 877606 . C A 2178 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.50;SB=-1.642e+03 GT:AD:DP:GQ:PL 1/1:0,130:132:99:2211,243,0 chrXII 877607 . T A 2201 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.282;QD=16.80;ReadPosRankSum=1.652;SB=-1.689e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2234,240,0 chrXII 877838 . G A 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.780;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.209;QD=23.21;ReadPosRankSum=0.971;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2145,207,0 chrXII 877989 . C T 2204 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.17;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2237,240,0 chrXII 878238 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.64;SB=-1.852e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3475,390,0 chrXII 878274 . A G 3478.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;DP=155;Dels=0.00;FS=10.291;HaplotypeScore=18.5191;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.493;QD=22.44;ReadPosRankSum=2.915;SB=-1.671e+03 GT:AD:DP:GQ:PL 1/1:3,150:155:99:3478,387,0 chrXII 878842 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=84;Dels=0.00;FS=2.596;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.744;QD=18.69;ReadPosRankSum=2.769;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:4,80:84:99:1603,177,0 chrXII 878875 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.51;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1594,171,0 chrXII 879073 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.29;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1653,180,0 chrXII 879328 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.24;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1881,207,0 chrXII 879756 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.78;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1992,210,0 chrXII 880251 . C A 1094 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.37;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1127,120,0 chrXII 880276 . G C 1106 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.75;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1139,123,0 chrXII 880319 . C T 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=4.279;HaplotypeScore=6.1564;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.363;QD=15.16;ReadPosRankSum=0.254;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1185,132,0 chrXII 880569 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.00;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1941,210,0 chrXII 880574 . T G 1751 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.69;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1784,201,0 chrXII 883249 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2152,231,0 chrXII 883429 . T C 2199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=2.737;HaplotypeScore=10.6198;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.833;QD=21.99;ReadPosRankSum=2.400;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2232,249,0 chrXII 884334 . T C 1140 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.39;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1173,129,0 chrXII 884593 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.46;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1558,165,0 chrXII 884712 . T C 1114 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.63;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1147,126,0 chrXII 884757 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=16.68;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:984,117,0 chrXII 884976 . T C 2037 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.90;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2070,231,0 chrXII 885035 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.78;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1002,114,0 chrXII 885037 . G C 974 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.10;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1007,114,0 chrXII 885146 . G T 1767 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.55;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1800,195,0 chrXII 885248 . T A 3092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=2.954;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.008;QD=23.25;ReadPosRankSum=2.339;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:3125,327,0 chrXII 885745 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1947,213,0 chrXII 886076 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.10;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1313,141,0 chrXII 886118 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1382,153,0 chrXII 886586 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.95;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1284,141,0 chrXII 886838 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.80;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2056,222,0 chrXII 886881 . G C 1586 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.67;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1619,177,0 chrXII 887067 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.38;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1980,222,0 chrXII 888293 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.26;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1998,225,0 chrXII 888362 . G C 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.6145;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.82;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1191,132,0 chrXII 888413 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.66;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1500,159,0 chrXII 888653 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.53;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1361,150,0 chrXII 888684 . G T 1180 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=18.15;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1213,129,0 chrXII 888710 . A G 917 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=13.89;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:950,108,0 chrXII 888713 . A G 884 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=13.81;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:917,99,0 chrXII 888715 . T A 834 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.852;QD=13.24;ReadPosRankSum=1.677;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:96:867,96,0 chrXII 888722 . T A 867 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=2.903;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=-1.576;QD=13.34;ReadPosRankSum=2.374;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:900,99,0 chrXII 888875 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.75;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1273,144,0 chrXII 888977 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.55;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2035,225,0 chrXII 889106 . C T 1599 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.61;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1632,174,0 chrXII 889427 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.46;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1942,210,0 chrXII 889757 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.97;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1664,186,0 chrXII 889775 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.12;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1591,171,0 chrXII 889952 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.44;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2232,237,0 chrXII 890261 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.11;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1145,126,0 chrXII 890318 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.808;QD=20.40;ReadPosRankSum=1.686;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1563,177,0 chrXII 891003 . T C 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=94;Dels=0.00;FS=7.268;HaplotypeScore=9.7468;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.638;QD=22.17;ReadPosRankSum=2.345;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:2117,231,0 chrXII 891197 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.2475;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.42;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1769,198,0 chrXII 891299 . T G 1371 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.87;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1404,156,0 chrXII 891320 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.92;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1116,129,0 chrXII 891323 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.38;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1163,123,0 chrXII 891422 . A G 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.324;DP=82;Dels=0.00;FS=13.059;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.403;QD=19.87;ReadPosRankSum=3.346;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:4,77:82:99:1662,189,0 chrXII 891452 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.03;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2016,216,0 chrXII 891584 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.9333;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.52;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2208,237,0 chrXII 892172 . T A 1904 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.70;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1937,222,0 chrXII 892892 . T C 2306 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.23;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2339,258,0 chrXII 893363 . A G 2739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.101;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.633;QD=18.63;ReadPosRankSum=1.708;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:1,144:147:99:2772,300,0 chrXII 893372 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=11.2879;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=18.18;SB=-1.918e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2832,306,0 chrXII 893651 . T C 2469 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.66;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2502,276,0 chrXII 893948 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.5293;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.32;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1902,213,0 chrXII 894104 . T A 1952 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.70;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1985,216,0 chrXII 894179 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.224;QD=18.40;ReadPosRankSum=1.700;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2039,234,0 chrXII 894324 . T C 830 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.75;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:863,96,0 chrXII 894359 . T C 666 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.86;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:699,75,0 chrXII 894362 . A G 604 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=14.05;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:69:637,69,0 chrXII 894513 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.06;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1489,159,0 chrXII 895241 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.40;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1604,171,0 chrXII 895451 . C T 1902 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.13;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1935,210,0 chrXII 895619 . T C 2072 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.73;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2105,237,0 chrXII 895631 . T C 2023 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.08;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2056,225,0 chrXII 895733 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.01;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1514,165,0 chrXII 895997 . A G 2688 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.21;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2721,300,0 chrXII 896197 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=3.245;HaplotypeScore=9.0593;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.112;QD=20.31;ReadPosRankSum=1.696;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1962,216,0 chrXII 897553 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1630,177,0 chrXII 897658 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.73;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1816,192,0 chrXII 897689 . T C 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=90;Dels=0.00;FS=4.293;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.329;QD=19.93;ReadPosRankSum=1.611;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,85:90:99:1827,201,0 chrXII 897709 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=2.649;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.835;QD=20.82;ReadPosRankSum=2.340;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1907,210,0 chrXII 897737 . A G 1787 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0211;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.64;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1820,201,0 chrXII 897926 . A T 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=5.593;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.239;QD=22.71;ReadPosRankSum=1.673;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1350,144,0 chrXII 898103 . A T 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=4.771;HaplotypeScore=9.7143;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.412;QD=21.55;ReadPosRankSum=1.650;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1865,201,0 chrXII 898209 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.03;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1203,132,0 chrXII 898212 . A G 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=0.469;QD=15.33;ReadPosRankSum=2.172;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:2,69:73:99:1152,129,0 chrXII 898414 . T G 1892 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.52;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1925,213,0 chrXII 899094 . G A 736 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.03;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:769,84,0 chrXII 899119 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.74;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:988,108,0 chrXII 899462 . A C 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.27;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1330,150,0 chrXII 899580 . C G 1191 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.89;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1224,135,0 chrXII 899679 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.97;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1190,126,0 chrXII 899733 . T C 1108 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.05;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1141,129,0 chrXII 899774 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.64;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1263,135,0 chrXII 899820 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.31;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1571,174,0 chrXII 899955 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.157;QD=20.75;ReadPosRankSum=1.642;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1631,183,0 chrXII 900108 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.7297;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.26;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1213,135,0 chrXII 900280 . T C 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.64;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1349,153,0 chrXII 900710 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1660,177,0 chrXII 900812 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.14;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1534,171,0 chrXII 900885 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.02;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1315,150,0 chrXII 901023 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.29;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1808,210,0 chrXII 901179 . C T 2004 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3328;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.66;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2037,216,0 chrXII 901826 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.83;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1351,150,0 chrXII 901929 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.76;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1041,114,0 chrXII 902175 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.57;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1185,129,0 chrXII 902330 . T C 988 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.48;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1021,114,0 chrXII 902475 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1280,141,0 chrXII 902591 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.94;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1501,162,0 chrXII 902715 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.79;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1339,144,0 chrXII 902761 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.44;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1908,204,0 chrXII 902850 . T C 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.755;QD=20.31;ReadPosRankSum=1.643;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1617,180,0 chrXII 902948 . C A 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.8834;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.00;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1692,180,0 chrXII 903006 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=117;Dels=0.00;FS=12.932;HaplotypeScore=13.0186;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.785;QD=21.50;ReadPosRankSum=2.888;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2548,288,0 chrXII 903374 . A T 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=1.003;QD=15.82;ReadPosRankSum=1.696;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1536,165,0 chrXII 903390 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0227;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=15.28;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1637,174,0 chrXII 903765 . A T 1659 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.23;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1692,183,0 chrXII 904696 . A G 1265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.266;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.200;QD=24.33;ReadPosRankSum=1.266;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1298,125,0 chrXII 904915 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1538,171,0 chrXII 905508 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.2842;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.05;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1443,153,0 chrXII 905691 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1340,153,0 chrXII 905771 . A T 1409 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.72;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1442,153,0 chrXII 906872 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.65;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1251,141,0 chrXII 907076 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1259,138,0 chrXII 908027 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.64;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1973,213,0 chrXII 909328 . T A 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.569;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.072;QD=20.94;ReadPosRankSum=1.677;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1352,147,0 chrXII 910292 . A G 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=74;Dels=0.00;FS=5.601;HaplotypeScore=9.7186;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.025;QD=18.32;ReadPosRankSum=1.682;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,68:74:99:1389,159,0 chrXII 910497 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.05;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1665,192,0 chrXII 910661 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.68;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1625,180,0 chrXII 911387 . G T 3618.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.5200;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.04;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,153:157:99:3618,384,0 chrXII 911501 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.55;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1780,201,0 chrXII 911510 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=17.92;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1395,156,0 chrXII 911657 . G A 3137 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.13;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:3170,336,0 chrXII 912351 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.66;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1917,198,0 chrXII 912364 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.88;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1787,198,0 chrXII 912367 . C T 1849 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.01;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1882,204,0 chrXII 912454 . A C 2388 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.96;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2421,276,0 chrXII 912538 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.71;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1532,162,0 chrXII 912847 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6579;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.32;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1171,126,0 chrXII 913009 . A C 1113 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.55;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1146,126,0 chrXII 913011 . T C 1188 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.48;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1221,132,0 chrXII 913123 . A G 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.289;QD=21.37;ReadPosRankSum=1.660;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1059,120,0 chrXII 913219 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.26;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1547,165,0 chrXII 913342 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.18;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1674,183,0 chrXII 913456 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.79;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2016,234,0 chrXII 913597 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.59;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2084,228,0 chrXII 913684 . G A 2121 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.33;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2154,240,0 chrXII 913801 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=14.53;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1486,168,0 chrXII 913906 . A G 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.232;DP=103;Dels=0.00;FS=8.927;HaplotypeScore=18.4229;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.181;QD=17.70;ReadPosRankSum=3.353;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:4,98:103:99:1856,210,0 chrXII 913948 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5806;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.00;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1692,183,0 chrXII 914086 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.24;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1711,186,0 chrXII 914428 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.18;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1558,177,0 chrXII 914581 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4975;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.69;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1372,156,0 chrXII 914707 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.74;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1626,171,0 chrXII 914775 . G T 1448 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.05;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1481,159,0 chrXII 915110 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=15.52;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:964,105,0 chrXII 915461 . A T 1534 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.60;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1567,174,0 chrXII 916707 . G A 817 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:850,96,0 chrXII 917100 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.63;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1147,123,0 chrXII 917305 . T C 562 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.03;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:595,66,0 chrXII 918006 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.98;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1152,123,0 chrXII 918322 . A G 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=98;Dels=0.00;FS=3.044;HaplotypeScore=13.8941;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.128;QD=17.40;ReadPosRankSum=2.398;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:2,93:98:99:1738,198,0 chrXII 918511 . T C 1401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.050;QD=20.91;ReadPosRankSum=1.680;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1434,159,0 chrXII 918824 . A G 1641 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.59;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1674,186,0 chrXII 919261 . T G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.330;QD=20.62;ReadPosRankSum=1.650;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:899,99,0 chrXII 920484 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.67;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1545,174,0 chrXII 920601 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.67;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1769,192,0 chrXII 920613 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.02;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1763,195,0 chrXII 921060 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1390,156,0 chrXII 921404 . A C 1219 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1252,138,0 chrXII 921984 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.94;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1779,189,0 chrXII 922026 . C A 2130 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=79.0191;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.66;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2163,231,0 chrXII 922242 . C G 1296 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.57;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1329,147,0 chrXII 922517 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.36;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1576,177,0 chrXII 922595 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1509,159,0 chrXII 922820 . A T 2645 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.1374;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.83;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2678,291,0 chrXII 923248 . G A 2227 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.88;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2260,237,0 chrXII 923570 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0255;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.42;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1601,183,0 chrXII 923789 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0584;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.57;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1314,138,0 chrXII 923885 . C T 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.84;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1933,204,0 chrXII 923906 . T G 1717 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.07;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1750,198,0 chrXII 924037 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.45;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1694,180,0 chrXII 924128 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.09;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1694,192,0 chrXII 924133 . T C 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.530;QD=17.93;ReadPosRankSum=2.163;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1575,180,0 chrXII 924245 . A C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.466;QD=18.39;ReadPosRankSum=1.688;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1486,168,0 chrXII 924492 . T C 1869 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.69;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1902,210,0 chrXII 924556 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.05;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1738,195,0 chrXII 925406 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.19;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1050,111,0 chrXII 925463 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1290,141,0 chrXII 925665 . T C 856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;DP=59;Dels=0.00;FS=2.873;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.063;QD=14.51;ReadPosRankSum=2.367;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:889,99,0 chrXII 925788 . T C 2244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.141;QD=22.90;ReadPosRankSum=1.697;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2277,255,0 chrXII 925840 . G A 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.424;HaplotypeScore=10.9016;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.572;QD=23.67;ReadPosRankSum=-0.192;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2613,279,0 chrXII 925971 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.71;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1618,177,0 chrXII 926623 . C T 1964 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.25;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1997,222,0 chrXII 927454 . T C 2014 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1091;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.18;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2047,228,0 chrXII 927638 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8391;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1249,132,0 chrXII 927723 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.97;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1564,168,0 chrXII 928086 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.18;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:719,81,0 chrXII 928109 . C A 894 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.35;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:927,102,0 chrXII 928185 . G A 832 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=16.64;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:865,93,0 chrXII 928259 . A C 1082 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.04;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1115,120,0 chrXII 928263 . T C 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=7.295;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.734;QD=19.98;ReadPosRankSum=1.674;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1212,132,0 chrXII 928313 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.50;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1194,135,0 chrXII 928626 . C G 1153 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.07;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1186,132,0 chrXII 928883 . C A 2409 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2442,270,0 chrXII 929634 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.12;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1272,135,0 chrXII 929725 . A G 740 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.97;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:773,87,0 chrXII 929744 . T G 795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=3.054;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.606;QD=18.49;ReadPosRankSum=2.336;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:93:828,93,0 chrXII 929781 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.472;QD=20.62;ReadPosRankSum=2.389;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1724,195,0 chrXII 929849 . G A 2798 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.42;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2831,318,0 chrXII 929932 . G A 2428 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.87;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2461,261,0 chrXII 929950 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.68;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1998,213,0 chrXII 929953 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.51;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1906,210,0 chrXII 929995 . C A 1450 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=12.5108;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=16.29;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1483,162,0 chrXII 930163 . C T 3472.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=16.9376;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.55;SB=-1.850e+03 GT:AD:DP:GQ:PL 1/1:0,153:154:99:3472,369,0 chrXII 930325 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.76;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2819,309,0 chrXII 930443 . G C 2043 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.09;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2076,234,0 chrXII 930472 . A C 1994 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.99;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2027,231,0 chrXII 930668 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.45;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2153,228,0 chrXII 930728 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.778;QD=18.63;ReadPosRankSum=2.391;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1598,177,0 chrXII 930773 . A G 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.442;QD=20.02;ReadPosRankSum=1.664;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1054,120,0 chrXII 931480 . G C 1744 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.52;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1777,201,0 chrXII 931517 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1315,147,0 chrXII 931804 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.89;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2616,279,0 chrXII 931890 . G C 2906 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=23.25;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2939,327,0 chrXII 932015 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.89;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1579,180,0 chrXII 932088 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.25;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1804,195,0 chrXII 932250 . T G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.148;DP=95;Dels=0.00;FS=5.691;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;MQRankSum=-0.286;QD=0.13;ReadPosRankSum=-4.091;SB=1.24 GT:AD:DP:GQ:PL 1/1:88,6:95:6:43,6,0 chrXII 932256 . A T 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=-3.375;QD=15.07;ReadPosRankSum=3.355;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1359,144,0 chrXII 932439 . A G 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.010;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.625;QD=19.00;ReadPosRankSum=2.341;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:96:888,96,0 chrXII 932469 . T C 835 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.97;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:99:868,99,0 chrXII 932662 . T C 758 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3229;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=13.07;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:90:791,90,0 chrXII 933245 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.24;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1188,135,0 chrXII 933272 . G A 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.485;QD=17.15;ReadPosRankSum=1.363;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1319,127,0 chrXII 933572 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.03;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1400,153,0 chrXII 933617 . G A 703 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.57;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:736,78,0 chrXII 933702 . C T 816 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.40;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:90:849,90,0 chrXII 933722 . A C 833 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.00;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:866,96,0 chrXII 933882 . G T 1251 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.85;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1284,141,0 chrXII 933908 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=25.67;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1496,159,0 chrXII 933932 . G T 1415 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.82;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1448,156,0 chrXII 934140 . T C 987 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.00;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1020,114,0 chrXII 934221 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=38.2670;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.44;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:863,90,0 chrXII 934420 . G A 2249 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.71;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2282,246,0 chrXII 934434 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=26.03;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2324,243,0 chrXII 934492 . A G 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=0.408;QD=20.84;ReadPosRankSum=1.579;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1450,165,0 chrXII 934515 . A T 1095 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.47;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1128,120,0 chrXII 935020 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1683,192,0 chrXII 935293 . A G 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.272;QD=20.75;ReadPosRankSum=1.698;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2149,240,0 chrXII 935365 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.96;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1560,174,0 chrXII 935485 . A G 2383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.563;QD=19.22;ReadPosRankSum=1.704;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:2416,264,0 chrXII 935578 . A G 2243 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.77;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2276,252,0 chrXII 935629 . G A 1747 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.05;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1780,189,0 chrXII 935644 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.54;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1635,174,0 chrXII 935713 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.191;HaplotypeScore=8.5404;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.212;QD=21.19;ReadPosRankSum=1.697;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2110,234,0 chrXII 935740 . G A 2016 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.84;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2049,228,0 chrXII 935743 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=3.013;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=1.405;QD=19.43;ReadPosRankSum=2.310;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2093,231,0 chrXII 935848 . A G 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.12;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1934,222,0 chrXII 935974 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.97;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2054,228,0 chrXII 936082 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.69;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2474,276,0 chrXII 936111 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.99;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2141,234,0 chrXII 936217 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.94;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1744,186,0 chrXII 936336 . G T 1721 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.5820;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.78;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1754,195,0 chrXII 936676 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.94;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1283,147,0 chrXII 937242 . A T 1021 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.47;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1054,111,0 chrXII 937738 . A G 2363 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=21.29;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2396,267,0 chrXII 937750 . C A 2298 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=20.52;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2331,252,0 chrXII 937765 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=18.55;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2203,246,0 chrXII 937821 . C A 2328 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.76;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2361,252,0 chrXII 937855 . A G 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=6.533;HaplotypeScore=10.4639;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.435;QD=21.29;ReadPosRankSum=2.363;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2481,288,0 chrXII 937897 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.45;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1786,201,0 chrXII 937900 . T A 1766 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.40;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1799,195,0 chrXII 937975 . G A 2469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=117;Dels=0.00;FS=3.921;HaplotypeScore=11.0834;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.576;QD=21.10;ReadPosRankSum=1.170;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,113:117:99:2502,273,0 chrXII 938122 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=14.8594;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;MQRankSum=-1.701;QD=16.12;ReadPosRankSum=3.077;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:4,107:112:99:1855,210,0 chrXII 938134 . A G 1710 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=15.83;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1743,195,0 chrXII 938137 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=15.70;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1713,186,0 chrXII 938653 . C T 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.586;QD=19.89;ReadPosRankSum=0.268;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1445,162,0 chrXII 938663 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.76;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1611,177,0 chrXII 938758 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.393;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.052;QD=20.18;ReadPosRankSum=1.680;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1385,156,0 chrXII 938791 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7920;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.33;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1408,153,0 chrXII 938809 . T C 1480 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.85;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1513,165,0 chrXII 939994 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.19;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1231,135,0 chrXII 940048 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.53;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1385,150,0 chrXII 940066 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.26;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1436,153,0 chrXII 940102 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.60;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1228,132,0 chrXII 940138 . A T 933 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.70;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:966,102,0 chrXII 940624 . T G 1448 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.31;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1481,168,0 chrXII 940672 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.06;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1533,174,0 chrXII 940786 . T C 1056 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.21;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1089,123,0 chrXII 940924 . A G 603 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=14.71;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:636,69,0 chrXII 940926 . G T 577 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=14.07;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:66:610,66,0 chrXII 941007 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.05;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:971,111,0 chrXII 941140 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=24.12;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1191,132,0 chrXII 947333 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.75;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:816,93,0 chrXII 947402 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=19.13;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1066,114,0 chrXII 947519 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=22.48;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2034,222,0 chrXII 947537 . A T 1971 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2004,219,0 chrXII 947720 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.19;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1453,156,0 chrXII 947828 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.30;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1564,165,0 chrXII 948002 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.46;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:775,90,0 chrXII 948186 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1638,174,0 chrXII 948224 . A T 1559 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.59;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1592,171,0 chrXII 948299 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.91;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1111,126,0 chrXII 948319 . G T 975 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.90;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1008,111,0 chrXII 948612 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.3477;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.77;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1852,198,0 chrXII 948676 . T C 1970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.811;QD=20.74;ReadPosRankSum=1.695;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2003,225,0 chrXII 948698 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=4.4504;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.324;QD=19.24;ReadPosRankSum=1.694;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1784,201,0 chrXII 948733 . A G 1395 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.65;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1428,159,0 chrXII 948914 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.050;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.287;QD=20.95;ReadPosRankSum=-0.079;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2317,255,0 chrXII 948922 . A T 2493 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.49;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2526,267,0 chrXII 948958 . T C 1784 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.18;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1817,207,0 chrXII 949030 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.42;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2116,228,0 chrXII 949053 . C T 2344 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.74;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2377,252,0 chrXII 949075 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.535;QD=18.82;ReadPosRankSum=1.701;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2103,237,0 chrXII 949229 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5666;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.04;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2177,240,0 chrXII 949369 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.26;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1755,189,0 chrXII 949418 . T A 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.95;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,177,0 chrXII 949427 . C G 1675 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.43;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1708,186,0 chrXII 949429 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=19.38;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1622,183,0 chrXII 949489 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.99;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1652,177,0 chrXII 949843 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.39;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1670,180,0 chrXII 949929 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.84;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1640,183,0 chrXII 950047 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.94;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1525,168,0 chrXII 950148 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.82;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2132,228,0 chrXII 950467 . A T 894 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.19;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:927,102,0 chrXII 950780 . C A 588 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=15.08;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:621,69,0 chrXII 950788 . T C 626 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.05;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:659,72,0 chrXII 950806 . C T 605 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=13.15;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:638,69,0 chrXII 950859 . C T 718 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=13.30;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:751,84,0 chrXII 951032 . C T 1327 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.40;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1360,147,0 chrXII 951212 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=23.06;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2201,243,0 chrXII 951341 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.80;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2175,243,0 chrXII 951524 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.11;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1742,198,0 chrXII 951540 . A G 1729 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.59;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1762,192,0 chrXII 951629 . A T 2217 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.86;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2250,249,0 chrXII 952187 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.44;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2191,231,0 chrXII 952196 . G C 2064 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=18.94;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2097,240,0 chrXII 952362 . C T 2654 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.49;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2687,285,0 chrXII 952574 . G T 2701 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.27;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2734,297,0 chrXII 953016 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.26;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1304,144,0 chrXII 953059 . G T 1505 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.81;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1538,162,0 chrXII 953266 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.35;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1299,138,0 chrXII 953884 . G T 2250 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.09;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2283,252,0 chrXII 954049 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1193,132,0 chrXII 954228 . T C 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=1.115;QD=23.08;ReadPosRankSum=1.685;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1718,186,0 chrXII 954572 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=21.48;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1945,207,0 chrXII 954585 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=18.58;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1612,180,0 chrXII 954590 . A C 1547 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=17.99;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1580,180,0 chrXII 954609 . G C 1393 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=15.31;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1426,165,0 chrXII 954714 . C T 2568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.033;DP=116;Dels=0.00;FS=3.757;HaplotypeScore=8.0441;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.459;QD=22.14;ReadPosRankSum=-1.216;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2601,256,0 chrXII 955133 . C A 1827 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.56;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1860,198,0 chrXII 955168 . A G 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=12.8619;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.616;QD=18.59;ReadPosRankSum=2.307;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,84:90:99:1706,189,0 chrXII 955822 . T C 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-1.441;QD=14.67;ReadPosRankSum=1.703;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1779,195,0 chrXII 955825 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=14.12;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1742,198,0 chrXII 956127 . C A 2778 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.05;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:2811,297,0 chrXII 956371 . G C 2259 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.14;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2292,261,0 chrXII 956398 . A G 2275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.515;QD=20.50;ReadPosRankSum=1.701;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2308,261,0 chrXII 956536 . T C 1384 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.21;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1417,159,0 chrXII 956543 . C T 1526 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1559,165,0 chrXII 956545 . A G 1470 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.09;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1503,168,0 chrXII 956833 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.58;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1659,189,0 chrXII 957115 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.9497;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.21;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1339,144,0 chrXII 957148 . A G 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.220;QD=21.25;ReadPosRankSum=1.635;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1542,174,0 chrXII 957985 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.35;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1233,138,0 chrXII 958009 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.85;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1244,141,0 chrXII 958253 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.09;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1557,165,0 chrXII 958349 . C T 2391 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.16;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2424,258,0 chrXII 958370 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=5.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.696;QD=18.63;ReadPosRankSum=1.703;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:1,116:118:99:2231,252,0 chrXII 958385 . C A 2311 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.75;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2344,252,0 chrXII 958718 . G A 2437 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.65;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2470,273,0 chrXII 958934 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.16;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1355,144,0 chrXII 958953 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.23;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1170,126,0 chrXII 958983 . C T 1047 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.16;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1080,114,0 chrXII 959099 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.08;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1407,159,0 chrXII 959546 . G C 1267 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.84;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1300,144,0 chrXII 959603 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.45;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1487,159,0 chrXII 959679 . C A 898 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.33;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:931,99,0 chrXII 959687 . A G 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=4.202;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.416;QD=15.98;ReadPosRankSum=1.663;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:832,93,0 chrXII 959702 . A C 794 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=14.98;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:827,96,0 chrXII 960131 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.67;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1232,135,0 chrXII 960138 . A C 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.376;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.907;QD=19.79;ReadPosRankSum=1.677;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1280,138,0 chrXII 960158 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.92;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1348,144,0 chrXII 960228 . A C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DP=64;Dels=0.00;FS=2.508;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.667;QD=21.20;ReadPosRankSum=2.287;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1390,132,0 chrXII 960299 . G A 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.619;DP=86;Dels=0.00;FS=5.626;HaplotypeScore=5.3047;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.701;QD=23.88;ReadPosRankSum=1.072;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:2087,209,0 chrXII 960686 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.12;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1691,180,0 chrXII 961106 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.24;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:845,93,0 chrXII 961110 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.77;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1009,111,0 chrXII 961154 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.27;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1052,117,0 chrXII 961196 . A T 1139 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.09;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1172,129,0 chrXII 961481 . T C 1398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.168;QD=21.18;ReadPosRankSum=2.375;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1431,162,0 chrXII 961565 . A T 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.527;QD=19.26;ReadPosRankSum=1.657;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:938,99,0 chrXII 961667 . A G 857 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.49;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:890,99,0 chrXII 961676 . C T 595 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.17;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:628,69,0 chrXII 961688 . T C 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=4.861;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.460;QD=14.37;ReadPosRankSum=1.662;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:84:737,84,0 chrXII 961731 . A G 952 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=15.61;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:985,111,0 chrXII 961827 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1517,168,0 chrXII 961898 . A G 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.254;QD=22.47;ReadPosRankSum=1.673;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1336,150,0 chrXII 962189 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.78;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1280,138,0 chrXII 962683 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.54;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:997,105,0 chrXII 962857 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.26;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1925,204,0 chrXII 962893 . A G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=61;Dels=0.00;FS=7.923;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.607;QD=23.13;ReadPosRankSum=2.283;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:2,57:61:99:1444,159,0 chrXII 963090 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.53;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1949,213,0 chrXII 963346 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=19.98;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2131,225,0 chrXII 963347 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=20.30;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2124,225,0 chrXII 963364 . C G 1801 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=17.49;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1834,201,0 chrXII 963375 . G T 1539 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=15.24;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1572,165,0 chrXII 963392 . A G 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3702;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-0.268;QD=13.42;ReadPosRankSum=1.696;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1335,150,0 chrXII 963469 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.83;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2116,231,0 chrXII 964450 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.63;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1333,147,0 chrXII 964503 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.03;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1140,126,0 chrXII 964507 . T C 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.029;QD=17.26;ReadPosRankSum=1.678;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1172,129,0 chrXII 964528 . A G 798 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=12.67;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:93:831,93,0 chrXII 964591 . T G 1287 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.80;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1320,144,0 chrXII 965342 . G A 1557 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1590,177,0 chrXII 965658 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.59;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1189,126,0 chrXII 966217 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1559,168,0 chrXII 966833 . G C 1512 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.30;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1545,174,0 chrXII 966841 . A G 1471 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=19.36;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1504,171,0 chrXII 967075 . C G 1351 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.87;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1384,156,0 chrXII 967096 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.29;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1289,147,0 chrXII 967144 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.39;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1081,117,0 chrXII 967268 . A G 786 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.143;QD=16.72;ReadPosRankSum=1.659;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:93:819,93,0 chrXII 967270 . C T 744 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=17.30;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:777,87,0 chrXII 967302 . T C 655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=4.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.003;QD=17.24;ReadPosRankSum=1.641;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:78:688,78,0 chrXII 967311 . C T 782 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=18.62;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:815,87,0 chrXII 967387 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.75;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1077,114,0 chrXII 967945 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.86;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1806,204,0 chrXII 968009 . A C 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.851;QD=20.83;ReadPosRankSum=1.497;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1262,124,0 chrXII 968191 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.58;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1155,129,0 chrXII 968208 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8256;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.27;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1310,141,0 chrXII 968379 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.88;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1524,165,0 chrXII 968392 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.93;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,159,0 chrXII 968426 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.18;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1081,120,0 chrXII 968701 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=17.99;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1382,150,0 chrXII 968702 . C A 1371 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.28;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1404,147,0 chrXII 968735 . A G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.834;QD=17.91;ReadPosRankSum=1.689;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1484,165,0 chrXII 969370 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1801,195,0 chrXII 969880 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.56;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1391,150,0 chrXII 970024 . A G 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.885;QD=19.98;ReadPosRankSum=1.694;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1831,204,0 chrXII 970693 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.60;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2044,225,0 chrXII 971581 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.45;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1706,186,0 chrXII 971617 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.19;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1786,189,0 chrXII 971844 . T A 1442 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1475,159,0 chrXII 972118 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.34;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1464,156,0 chrXII 972375 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.00;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1137,120,0 chrXII 972703 . A G 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;DP=63;Dels=0.00;FS=2.630;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.565;QD=18.79;ReadPosRankSum=2.824;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:3,60:63:99:1217,135,0 chrXII 972787 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.53;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1881,204,0 chrXII 972812 . G T 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9017;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=1.181;QD=21.76;ReadPosRankSum=0.433;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1948,204,0 chrXII 973354 . C G 1591 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1624,183,0 chrXII 973931 . A G 2305 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.58;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2338,261,0 chrXII 973972 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.23;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1789,195,0 chrXII 974070 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.93;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1074,123,0 chrXII 974129 . T C 1029 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.44;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1062,120,0 chrXII 974557 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.80;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1254,135,0 chrXII 974574 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.44;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1405,156,0 chrXII 974783 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1162,123,0 chrXII 974945 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.89;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1544,171,0 chrXII 975434 . G T 1248 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.69;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1281,138,0 chrXII 975527 . A C 1830 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.89;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1863,204,0 chrXII 975595 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.73;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2206,252,0 chrXII 975664 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=18.49;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1346,144,0 chrXII 975673 . T C 1019 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;MQRankSum=-0.773;QD=15.68;ReadPosRankSum=1.572;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1052,120,0 chrXII 975675 . G A 1012 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=16.59;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1045,114,0 chrXII 975681 . G A 692 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.96;MQ0=0;QD=13.06;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:725,81,0 chrXII 975753 . G A 325 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;QD=14.77;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:39:358,39,0 chrXII 975763 . A G 288 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=15.16;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:321,36,0 chrXII 975766 . T C 268 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=14.11;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:301,36,0 chrXII 975786 . T A 240 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=10.91;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:273,30,0 chrXII 975878 . T A 1039 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.20;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1072,114,0 chrXII 975883 . A G 994 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.29;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1027,114,0 chrXII 975964 . T G 212.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=11.3896;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=11.78;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,17:18:27:245,27,0 chrXII 976086 . A T 127.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=6.9406;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;MQRankSum=-1.179;QD=14.13;ReadPosRankSum=1.666;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:2,7:9:18:160,18,0 chrXII 976087 . T C 92.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=6.9406;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;MQRankSum=-1.666;QD=10.25;ReadPosRankSum=1.666;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:2,7:9:15:125,15,0 chrXII 976123 . T C 182.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.826;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;MQRankSum=0.079;QD=11.38;ReadPosRankSum=2.143;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:24:215,24,0 chrXII 976210 . G A 611 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=25.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:69:644,69,0 chrXII 976224 . A T 357 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=23.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:42:390,42,0 chrXII 981725 . G A 424 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=9.42;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:457,51,0 chrXII 981730 . C T 449 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=9.16;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:57:482,57,0 chrXII 981731 . G A 482 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.08;MQ0=0;QD=9.84;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:57:515,57,0 chrXII 981795 . A T 1095 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=0;QD=17.95;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1128,120,0 chrXII 981833 . C A 1539 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=60.3565;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=21.37;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1572,168,0 chrXII 981883 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=22.40;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2273,240,0 chrXII 982208 . G T 1997 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=19.02;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2030,216,0 chrXII 982219 . T A 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=112;Dels=0.00;FS=7.412;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.978;QD=17.84;ReadPosRankSum=2.362;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2031,213,0 chrXII 982222 . A G 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=112;Dels=0.00;FS=5.901;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-1.409;QD=16.86;ReadPosRankSum=2.900;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:3,108:112:99:1921,216,0 chrXII 982306 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.50;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2003,216,0 chrXII 982307 . A G 1930 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.92;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1963,219,0 chrXII 982537 . A C 1092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.056;QD=17.61;ReadPosRankSum=1.676;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1125,123,0 chrXII 982562 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=16.90;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1199,126,0 chrXII 982870 . A T 1671 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.15;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1704,183,0 chrXII 982889 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.48;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1610,177,0 chrXII 982920 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.99;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1616,177,0 chrXII 982986 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.09;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1734,186,0 chrXII 983190 . C T 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.274;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.265;QD=20.24;ReadPosRankSum=1.569;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1794,192,0 chrXII 984579 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1448,162,0 chrXII 984639 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1750,186,0 chrXII 984873 . A G 1696 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.23;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1729,195,0 chrXII 985307 . A G 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=4.041;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.147;QD=20.97;ReadPosRankSum=1.683;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1543,168,0 chrXII 986214 . T C 1254 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.90;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1287,147,0 chrXII 986217 . T C 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.734;QD=20.58;ReadPosRankSum=1.674;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1247,141,0 chrXII 986469 . T A 1502 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.42;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1535,162,0 chrXII 986803 . G A 3330.01 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.85;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:3330,351,0 chrXII 986998 . A G 1961 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.07;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1994,219,0 chrXII 987115 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.22;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,121:124:99:2416,270,0 chrXII 987293 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.94;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2211,246,0 chrXII 987999 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2079,219,0 chrXII 988847 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.38;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1264,135,0 chrXII 989024 . G C 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.94;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1269,144,0 chrXII 989534 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.28;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1422,159,0 chrXII 989610 . G A 2467 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.84;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2500,264,0 chrXII 989666 . T C 1637 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.26;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1670,186,0 chrXII 989828 . A G 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.732;QD=17.35;ReadPosRankSum=1.684;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1282,150,0 chrXII 989831 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.21;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1339,141,0 chrXII 989852 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.76;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1241,132,0 chrXII 990547 . A G 2198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.452;QD=22.20;ReadPosRankSum=1.697;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2231,246,0 chrXII 990749 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7565;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1890,201,0 chrXII 990848 . A G 1867 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.96;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1900,210,0 chrXII 990875 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.59;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2214,240,0 chrXII 990920 . G T 2474 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6157;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.89;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2507,273,0 chrXII 991868 . G A 961 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.48;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:994,105,0 chrXII 991871 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.23;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1033,111,0 chrXII 991943 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.44;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1258,135,0 chrXII 991988 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.81;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1712,189,0 chrXII 992332 . T C 766 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=13.21;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:87:799,87,0 chrXII 992572 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=15.54;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1338,144,0 chrXII 992595 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.85;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1307,147,0 chrXII 992601 . A C 1215 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=13.65;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1248,141,0 chrXII 992662 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.06;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1176,126,0 chrXII 992819 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.75;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1268,138,0 chrXII 992940 . G T 1197 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.94;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1230,132,0 chrXII 992990 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.124;QD=20.05;ReadPosRankSum=1.672;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1196,135,0 chrXII 993389 . G T 1927 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.03;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1960,207,0 chrXII 993707 . C T 1978 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.27;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2011,216,0 chrXII 993808 . G A 2201 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=5.6929;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.17;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2234,240,0 chrXII 994078 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.63;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1415,159,0 chrXII 994177 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.17;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1155,132,0 chrXII 994215 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.45;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1380,147,0 chrXII 994411 . A G 669 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.91;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:702,78,0 chrXII 994453 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.31;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1012,114,0 chrXII 994520 . T C 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.080;QD=21.14;ReadPosRankSum=1.632;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1492,165,0 chrXII 994820 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.97;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1615,174,0 chrXII 994873 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.8664;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=20.74;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2107,228,0 chrXII 994876 . T A 1920 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.8397;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.59;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1953,213,0 chrXII 994933 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=15.64;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1425,159,0 chrXII 994942 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.01;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1474,159,0 chrXII 995272 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7884;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.55;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1882,213,0 chrXII 995326 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.23;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1348,144,0 chrXII 995512 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.27;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1770,189,0 chrXII 995599 . A G 1108 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.73;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1141,123,0 chrXII 995857 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.15;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1422,156,0 chrXII 996068 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.22;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1546,171,0 chrXII 996244 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.89;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1537,162,0 chrXII 996556 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.71;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1379,156,0 chrXII 996739 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.702;QD=20.47;ReadPosRankSum=1.670;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2305,261,0 chrXII 996977 . A T 1876 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.60;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1909,207,0 chrXII 997285 . G A 1978 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.74;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2011,219,0 chrXII 997480 . A G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=98;Dels=0.00;FS=3.055;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.800;QD=21.30;ReadPosRankSum=0.850;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,95:98:99:2120,234,0 chrXII 997535 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.90;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1983,210,0 chrXII 997556 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.0501;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.38;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1945,219,0 chrXII 998338 . T C 1075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.562;QD=17.62;ReadPosRankSum=1.392;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1108,101,0 chrXII 998377 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.12;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1104,126,0 chrXII 998854 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.271;QD=18.37;ReadPosRankSum=1.624;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1209,119,0 chrXII 999140 . T A 889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=67;Dels=0.04;FS=3.148;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=1.353;QD=13.27;ReadPosRankSum=1.462;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:922,105,0 chrXII 999870 . T A 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=0.993;QD=22.24;ReadPosRankSum=1.640;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1723,186,0 chrXII 1000003 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.74;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1443,156,0 chrXII 1000542 . C G 1994 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.99;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2027,225,0 chrXII 1000826 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.48;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1137,129,0 chrXII 1000944 . A G 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.010;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.276;QD=17.70;ReadPosRankSum=1.048;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1378,153,0 chrXII 1000966 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.36;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1698,189,0 chrXII 1001278 . G T 2041 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.01;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2074,222,0 chrXII 1001409 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4815;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.15;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1388,159,0 chrXII 1001464 . T G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=4.065;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.611;QD=18.07;ReadPosRankSum=1.630;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:1912,216,0 chrXII 1001623 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.00;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1648,177,0 chrXII 1001707 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.74;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1734,201,0 chrXII 1001833 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.92;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1560,165,0 chrXII 1001891 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.35;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1426,162,0 chrXII 1002243 . G C 336 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=11.3540;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=7.64;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:44:42:369,42,0 chrXII 1002296 . G T 855 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:888,96,0 chrXII 1003372 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.29;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1923,216,0 chrXII 1003861 . C G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;DP=64;Dels=0.00;FS=22.925;HaplotypeScore=4.1379;MLEAC=1;MLEAF=0.500;MQ=52.08;MQ0=1;MQRankSum=-4.264;QD=1.05;ReadPosRankSum=-0.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,11:64:97:97,0,935 chrXII 1004176 . G A 146.06 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=4.87;SB=-7.607e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:21:179,21,0 chrXII 1004186 . A T 372 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=13.78;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:45:405,45,0 chrXII 1004257 . T C 1085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.213;QD=20.87;ReadPosRankSum=2.355;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1118,126,0 chrXII 1004509 . A G 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=0.064;QD=24.41;ReadPosRankSum=1.668;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1351,153,0 chrXII 1004687 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.6017;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.75;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2099,231,0 chrXII 1004854 . A G 2146 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.04;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2179,240,0 chrXII 1004857 . A G 2041 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.82;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2074,231,0 chrXII 1005004 . G A 2167 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.44;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2200,234,0 chrXII 1005925 . T C 837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.590;DP=52;Dels=0.00;FS=15.119;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=2.041;QD=16.10;ReadPosRankSum=2.512;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:99:870,99,0 chrXII 1006048 . C G 17.45 LowQual;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=32.1163;MLEAC=1;MLEAF=0.500;MQ=50.60;MQ0=0;QD=0.42;SB=19.39 GT:AD:DP:GQ:PL 1/1:0,3:42:6:48,6,0 chrXII 1006086 . A G 685 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=12.23;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:81:718,81,0 chrXII 1006150 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1262,138,0 chrXII 1006227 . T C 1440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=2.894;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.941;QD=22.86;ReadPosRankSum=2.254;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1473,168,0 chrXII 1006283 . A T 760 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=12.88;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:87:793,87,0 chrXII 1006293 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=10.61;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:691,78,0 chrXII 1006308 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=11.53;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:84:771,84,0 chrXII 1006345 . A G 737 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=12.71;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:770,84,0 chrXII 1006428 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=24.38;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1642,180,0 chrXII 1006476 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.08;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1285,135,0 chrXII 1006560 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.47;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1104,117,0 chrXII 1006617 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.09;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1064,120,0 chrXII 1006629 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=18.61;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1094,123,0 chrXII 1006710 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.55;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1451,165,0 chrXII 1006767 . A T 1427 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.99;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1460,156,0 chrXII 1006859 . T A 1297 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.36;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1330,141,0 chrXII 1006863 . G C 1177 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.30;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1210,135,0 chrXII 1006977 . A G 723 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.03;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:756,84,0 chrXII 1007069 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.08;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1115,123,0 chrXII 1007084 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.78;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1318,141,0 chrXII 1007205 . T A 1090 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.96;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1123,126,0 chrXII 1007289 . A G 570 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.11;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:603,66,0 chrXII 1007690 . T G 1607 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.63;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1640,180,0 chrXII 1007730 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.79;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1717,192,0 chrXII 1007751 . G A 1911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=104;Dels=0.00;FS=4.943;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.992;QD=18.37;ReadPosRankSum=-1.598;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1944,219,0 chrXII 1007846 . C G 1964 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.25;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1997,225,0 chrXII 1008048 . A G 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.115;QD=22.28;ReadPosRankSum=1.694;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2038,228,0 chrXII 1008420 . C A 1636 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3525;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.72;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1669,180,0 chrXII 1008693 . A G 943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=62;Dels=0.00;FS=3.082;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.175;QD=15.21;ReadPosRankSum=2.291;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:976,111,0 chrXII 1008704 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.31;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1044,111,0 chrXII 1008786 . A G 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.894;QD=21.24;ReadPosRankSum=1.621;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1350,150,0 chrXII 1008837 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.20;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:778,87,0 chrXII 1008842 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=17.83;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:871,93,0 chrXII 1008873 . A T 1128 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.45;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1161,126,0 chrXII 1008909 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.81;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1499,165,0 chrXII 1009047 . T G 1621 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.05;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1654,183,0 chrXII 1009056 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.37;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1700,183,0 chrXII 1009176 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.91;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2209,240,0 chrXII 1009478 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.87;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2372,249,0 chrXII 1009506 . T A 1777 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.97;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1810,201,0 chrXII 1009536 . G A 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=-0.628;QD=21.71;ReadPosRankSum=-1.130;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1531,162,0 chrXII 1009581 . T G 1108 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.15;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1141,126,0 chrXII 1009608 . T C 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.480;QD=18.60;ReadPosRankSum=1.669;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1056,120,0 chrXII 1009623 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.80;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1241,138,0 chrXII 1009697 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.68;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1575,180,0 chrXII 1009719 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.56;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1635,174,0 chrXII 1009941 . C A 1168 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.36;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1201,129,0 chrXII 1010166 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.21;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1588,177,0 chrXII 1011169 . T G 851 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.69;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:884,102,0 chrXII 1011170 . C A 924 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.43;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:957,102,0 chrXII 1011268 . T A 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=5.786;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.155;QD=21.44;ReadPosRankSum=1.684;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1577,174,0 chrXII 1011520 . T G 875 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.34;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:908,99,0 chrXII 1011621 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=16.56;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1374,156,0 chrXII 1012271 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=13.81;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:917,102,0 chrXII 1012275 . A T 774 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=12.09;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:87:807,87,0 chrXII 1012917 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.54;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3339,372,0 chrXII 1013133 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.19;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2072,225,0 chrXII 1013388 . A G 2349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=8.241;HaplotypeScore=10.7668;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.636;QD=19.74;ReadPosRankSum=2.387;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2382,273,0 chrXII 1013592 . A C 1006 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.05;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1039,120,0 chrXII 1014095 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=17.82;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1191,138,0 chrXII 1014332 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.30;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1534,165,0 chrXII 1014437 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.57;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1047,111,0 chrXII 1014447 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.49;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:910,96,0 chrXII 1014976 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2020,216,0 chrXII 1015108 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.54;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1186,126,0 chrXII 1015184 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:952,105,0 chrXII 1016758 . T A 1794 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.88;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1827,195,0 chrXII 1016924 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.62;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1460,159,0 chrXII 1017081 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.65;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1251,132,0 chrXII 1017404 . C A 1043 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1076,120,0 chrXII 1017596 . C A 1585 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2553;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.38;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1618,174,0 chrXII 1019199 . A G 1056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=4.973;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.945;QD=23.47;ReadPosRankSum=1.654;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:1089,117,0 chrXII 1019633 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1870,198,0 chrXII 1019989 . T A 2090 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.6586;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.77;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2123,222,0 chrXII 1020142 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.46;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1547,177,0 chrXII 1020245 . T G 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.57;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1227,138,0 chrXII 1020317 . G C 1180 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.67;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1213,138,0 chrXII 1020320 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.32;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1312,141,0 chrXII 1020492 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=16.58;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:912,105,0 chrXII 1020500 . A G 824 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.85;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:857,96,0 chrXII 1020551 . C T 615 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=12.30;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:72:648,72,0 chrXII 1020553 . A G 621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-1.450;QD=12.67;ReadPosRankSum=1.662;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:72:654,72,0 chrXII 1020605 . T C 953 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.98;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:986,111,0 chrXII 1020763 . A C 1115 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.30;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1148,126,0 chrXII 1020964 . C T 820 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=20.00;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:90:853,90,0 chrXII 1020965 . G T 821 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.52;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:854,90,0 chrXII 1020991 . T G 680 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.25;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:713,81,0 chrXII 1021039 . T C 889 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.20;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:922,102,0 chrXII 1021226 . A C 1176 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=17.55;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1209,132,0 chrXII 1021249 . T G 1247 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=15.21;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1280,141,0 chrXII 1021261 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=14.20;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1098,114,0 chrXII 1021262 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=14.81;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1144,117,0 chrXII 1021283 . T C 1111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=8.431;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-1.080;QD=13.72;ReadPosRankSum=2.389;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1144,129,0 chrXII 1021377 . G T 1521 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.14;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1554,168,0 chrXII 1021444 . T A 1315 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.63;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1348,144,0 chrXII 1021464 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.52;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1263,135,0 chrXII 1021577 . C T 932 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.35;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:965,105,0 chrXII 1021580 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.85;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:968,111,0 chrXII 1021739 . A G 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.506;QD=21.30;ReadPosRankSum=1.657;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:99:1034,114,0 chrXII 1021808 . T G 1101 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.66;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1134,129,0 chrXII 1022290 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.85;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1672,192,0 chrXII 1022329 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=12.0279;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.64;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1414,159,0 chrXII 1022895 . T C 2728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=130;Dels=0.00;FS=3.897;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.359;QD=20.98;ReadPosRankSum=1.705;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2761,303,0 chrXII 1023320 . G A 2979 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=15.2229;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.74;SB=-1.557e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3012,321,0 chrXII 1023413 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.85;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2409,252,0 chrXII 1023823 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.15;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1406,150,0 chrXII 1024016 . T C 666 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=14.17;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:78:699,78,0 chrXII 1024017 . C T 696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-1.069;QD=14.81;ReadPosRankSum=1.585;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,46:47:78:729,78,0 chrXII 1024168 . G C 959 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.59;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:99:992,111,0 chrXII 1024747 . A G 792 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.84;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:90:825,90,0 chrXII 1025078 . C G 468 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:57:501,57,0 chrXII 1025152 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:84:759,84,0 chrXII 1025510 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.46;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1434,153,0 chrXII 1025702 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.44;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1341,147,0 chrXII 1025733 . C G 1218 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7223;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=17.91;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1251,144,0 chrXII 1025753 . T C 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=66;Dels=0.00;FS=2.635;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.273;QD=17.18;ReadPosRankSum=2.374;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:2,63:66:99:1167,132,0 chrXII 1025801 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.03;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1289,147,0 chrXII 1025892 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.14;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2399,252,0 chrXII 1026338 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.72;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1336,141,0 chrXII 1026556 . A G 482 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.6714;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.61;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:57:515,57,0 chrXII 1026557 . T G 517 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.6714;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.67;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:60:550,60,0 chrXII 1026889 . T C 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.210;QD=25.41;ReadPosRankSum=1.685;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1888,210,0 chrXII 1027477 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.92;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1341,150,0 chrXII 1027483 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.96;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1254,141,0 chrXII 1027569 . A G 2516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=116;Dels=0.00;FS=7.903;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.392;QD=21.69;ReadPosRankSum=2.407;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2549,279,0 chrXII 1028133 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.69;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2164,234,0 chrXII 1028193 . C A 1891 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.70;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1924,207,0 chrXII 1028347 . T A 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.17;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2277,246,0 chrXII 1028370 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.882;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.323;QD=20.23;ReadPosRankSum=1.701;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2279,249,0 chrXII 1028477 . A G 1774 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.87;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1807,201,0 chrXII 1028958 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.44;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1598,177,0 chrXII 1030090 . C T 2551 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=24.53;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2584,273,0 chrXII 1030134 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=16.40;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1148,123,0 chrXII 1030137 . A G 1063 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=15.87;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1096,120,0 chrXII 1030159 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.3314;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=11.75;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1149,129,0 chrXII 1030302 . G T 2168 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=24.64;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2201,234,0 chrXII 1030577 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=18.32;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1737,192,0 chrXII 1030580 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.59;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1799,195,0 chrXII 1030604 . T G 1159 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.46;MQ0=0;MQRankSum=-1.206;QD=14.67;ReadPosRankSum=1.688;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1192,135,0 chrXII 1030608 . C T 1204 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=16.27;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1237,132,0 chrXII 1030614 . A G 1110 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=15.42;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1143,126,0 chrXII 1031518 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0707;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.976;QD=22.34;ReadPosRankSum=1.692;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1999,225,0 chrXII 1031571 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=14.9548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1591,174,0 chrXII 1032015 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.60;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1777,195,0 chrXII 1032426 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.84;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1889,207,0 chrXII 1032556 . A T 1402 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.57;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1435,156,0 chrXII 1032807 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=16.86;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1449,162,0 chrXII 1032821 . A C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=3.023;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.073;QD=15.60;ReadPosRankSum=2.391;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1343,153,0 chrXII 1032857 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.2081;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=15.23;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1343,144,0 chrXII 1032869 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=14.08;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1075,120,0 chrXII 1033274 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.16;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1585,168,0 chrXII 1033335 . A T 1777 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.08;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1810,195,0 chrXII 1033418 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.181;QD=21.16;ReadPosRankSum=1.681;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1472,168,0 chrXII 1033763 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1677,177,0 chrXII 1033895 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.42;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1728,192,0 chrXII 1034027 . G A 1682 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1715,180,0 chrXII 1034073 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.81;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1598,177,0 chrXII 1034264 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1656,180,0 chrXII 1034753 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.64;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2110,228,0 chrXII 1035032 . C T 2725 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.49;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2758,297,0 chrXII 1036112 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.14;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1977,216,0 chrXII 1036488 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.76;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1506,168,0 chrXII 1036568 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.00;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1785,186,0 chrXII 1037268 . A T 2064 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.45;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2097,228,0 chrXII 1037313 . A G 2030 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.5088;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.07;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2063,228,0 chrXII 1038631 . A G 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9021;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.175;QD=18.48;ReadPosRankSum=1.693;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1678,189,0 chrXII 1038987 . C T 864 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.28;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:897,96,0 chrXII 1039057 . C A 1482 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7152;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1515,165,0 chrXII 1039090 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1657,186,0 chrXII 1039435 . T A 2676 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2709,288,0 chrXII 1039504 . T C 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=3.047;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.554;QD=21.46;ReadPosRankSum=2.401;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:2,98:103:99:2243,249,0 chrXII 1040029 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.01;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1596,177,0 chrXII 1040062 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.77;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1274,135,0 chrXII 1040071 . A G 1220 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.00;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1253,138,0 chrXII 1040197 . A T 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.49;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,201,0 chrXII 1040218 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.90;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1914,201,0 chrXII 1040235 . T G 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.51;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1736,192,0 chrXII 1040254 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.1159;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.18;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1706,189,0 chrXII 1040317 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.47;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1552,165,0 chrXII 1040530 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.54;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1864,204,0 chrXII 1040785 . G A 2286 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.33;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,95:98:99:2319,246,0 chrXII 1041082 . A G 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=85;Dels=0.00;FS=2.973;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.394;QD=20.46;ReadPosRankSum=2.362;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1772,201,0 chrXII 1041385 . A T 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=64;Dels=0.00;FS=4.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.369;QD=19.48;ReadPosRankSum=1.619;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1280,138,0 chrXII 1041406 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.19;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1542,165,0 chrXII 1041619 . A T 1396 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.67;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1429,153,0 chrXII 1041713 . A G 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=67;Dels=0.00;FS=5.730;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.985;QD=21.88;ReadPosRankSum=2.744;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1499,162,0 chrXII 1041774 . A G 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.593;QD=20.55;ReadPosRankSum=1.637;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1554,174,0 chrXII 1041886 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.99;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1544,177,0 chrXII 1041901 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.39;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1094,120,0 chrXII 1041999 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.48;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1442,159,0 chrXII 1042079 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.3251;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.60;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1228,129,0 chrXII 1042132 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.83;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1654,180,0 chrXII 1042381 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.98;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1152,126,0 chrXII 1042612 . G A 2156 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=12.3924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2189,234,0 chrXII 1042809 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1374,150,0 chrXII 1043089 . C A 1682 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.02;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1715,189,0 chrXII 1043284 . A C 1102 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.19;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1135,123,0 chrXII 1043638 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.45;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1011,111,0 chrXII 1043699 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.15;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1213,138,0 chrXII 1043701 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.03;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1205,129,0 chrXII 1043965 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.98;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1557,165,0 chrXII 1044768 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1111,120,0 chrXII 1046001 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.04;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1231,138,0 chrXII 1046601 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.55;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1554,177,0 chrXII 1046803 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.99;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1628,171,0 chrXII 1046930 . A C 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=3.104;HaplotypeScore=11.5619;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.111;QD=18.79;ReadPosRankSum=1.659;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:916,105,0 chrXII 1047100 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.4973;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.34;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1477,159,0 chrXII 1047210 . A T 1463 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.80;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1496,162,0 chrXII 1047367 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=20.94;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1352,147,0 chrXII 1047516 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.89;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1390,150,0 chrXII 1047572 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.34;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1274,141,0 chrXII 1048356 . C G 1773 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.6837;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.11;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1806,204,0 chrXII 1048806 . A T 2589 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.3386;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.12;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2622,282,0 chrXII 1048995 . T C 2448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=2.958;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.548;QD=22.05;ReadPosRankSum=2.405;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2481,270,0 chrXII 1049196 . G A 2686 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4900;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.02;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2719,294,0 chrXII 1049481 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2048,219,0 chrXII 1050090 . A G 956 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.34;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:989,108,0 chrXII 1050100 . A G 821 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.66;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:854,96,0 chrXII 1050355 . C A 1317 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.80;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1350,144,0 chrXII 1051259 . C T 1624 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3923;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.88;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1657,180,0 chrXII 1051488 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.48;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1572,174,0 chrXII 1052021 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.87;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1433,162,0 chrXII 1052163 . C T 715 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=16.25;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:748,84,0 chrXII 1052165 . A G 696 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=16.98;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:729,81,0 chrXII 1052174 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.01;MQ0=0;QD=16.44;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:740,78,0 chrXII 1052188 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=13.52;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:81:763,81,0 chrXII 1052191 . G A 729 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=14.02;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:762,81,0 chrXII 1052204 . A G 883 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=14.72;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:916,99,0 chrXII 1052226 . A T 1260 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3144;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.95;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1293,138,0 chrXII 1052276 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.61;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1875,198,0 chrXII 1052529 . A G 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=109;Dels=0.00;FS=13.128;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.081;QD=24.16;ReadPosRankSum=2.381;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,105:109:99:2666,294,0 chrXII 1052563 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.536;QD=23.90;ReadPosRankSum=1.650;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2041,234,0 chrXII 1052610 . G C 1503 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.87;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1536,174,0 chrXII 1052670 . T A 1646 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.63;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1679,186,0 chrXII 1052950 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.21;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1224,129,0 chrXII 1053107 . G C 517 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=15.21;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:63:550,63,0 chrXII 1053367 . A G 421 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.05;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:51:454,51,0 chrXII 1053429 . A G 635 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:27:72:668,72,0 chrXII 1053517 . T A 1031 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.83;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1064,120,0 chrXII 1054279 . C T 1352 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.31;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1385,147,0 chrXII 1054495 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.70;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1130,129,0 chrXII 1054882 . T C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.6314;MLEAC=2;MLEAF=1.00;MQ=60.06;MQ0=0;MQRankSum=-0.556;QD=19.62;ReadPosRankSum=1.669;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,108:113:99:2250,255,0 chrXII 1054922 . T C 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.959;QD=22.57;ReadPosRankSum=1.703;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2786,312,0 chrXII 1055114 . T A 1046 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.73;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1079,117,0 chrXII 1055129 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.73;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1082,123,0 chrXII 1055417 . T C 887 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.63;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:920,102,0 chrXII 1055554 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=74;Dels=0.00;FS=4.594;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.481;QD=18.49;ReadPosRankSum=1.684;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1401,153,0 chrXII 1055717 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.92;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1447,162,0 chrXII 1055775 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.96;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1702,183,0 chrXII 1055776 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.82;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1713,186,0 chrXII 1055851 . A G 1087 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.76;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1120,126,0 chrXII 1056105 . G C 1507 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=17.12;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:88:99:1540,177,0 chrXII 1056190 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2126;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.80;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1716,189,0 chrXII 1056565 . G A 2312 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.76;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2345,261,0 chrXII 1056569 . G C 2297 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.98;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2330,258,0 chrXII 1056675 . G T 2309 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.9722;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.80;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2342,252,0 chrXII 1056760 . G C 2628 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.69;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2661,300,0 chrXII 1056897 . G A 2083 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=19.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2116,225,0 chrXII 1056898 . T A 2033 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.55;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2066,225,0 chrXII 1056900 . G A 2048 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.32;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2081,222,0 chrXII 1056995 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.12;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2225,246,0 chrXII 1057013 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=14.36;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1656,183,0 chrXII 1057027 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=17.25;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1930,204,0 chrXII 1057047 . G T 2156 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.71;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2189,234,0 chrXII 1057140 . G A 3321.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.01;FS=0.000;HaplotypeScore=20.3537;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.75;SB=-1.732e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3321,354,0 chrXII 1057168 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=12.4982;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.52;SB=-1.750e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2941,321,0 chrXII 1057759 . T C 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=8.340;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.630;QD=17.12;ReadPosRankSum=2.394;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1540,174,0 chrXII 1057870 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.51;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1990,213,0 chrXII 1058188 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.51;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2194,234,0 chrXII 1058899 . A G 850 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.89;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:883,99,0 chrXII 1059100 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.16;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1407,156,0 chrXII 1059428 . A T 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-1.825;QD=14.94;ReadPosRankSum=2.346;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1094,117,0 chrXII 1059564 . T A 1578 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.48;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1611,180,0 chrXII 1059640 . G T 1101 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=16.43;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1134,123,0 chrXII 1059652 . G C 1095 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.87;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1128,129,0 chrXII 1059690 . A C 113.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.705;DP=117;Dels=0.00;FS=7.061;HaplotypeScore=88.9202;MLEAC=1;MLEAF=0.500;MQ=54.71;MQ0=0;MQRankSum=1.830;QD=0.97;ReadPosRankSum=-3.495;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:84,30:117:46:143,0,46 chrXII 1060128 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.337;DP=123;Dels=0.00;FS=44.690;HaplotypeScore=12.1312;MLEAC=1;MLEAF=0.500;MQ=50.10;MQ0=23;MQRankSum=-5.250;QD=0.11;ReadPosRankSum=3.602;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,34:123:43:43,0,1443 chrXII 1060192 . C T 1769 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.732;DP=131;Dels=0.00;FS=13.864;HaplotypeScore=9.7359;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=27;MQRankSum=4.046;QD=13.50;ReadPosRankSum=-1.259;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:33,98:131:99:1802,155,0 chrXII 1060287 . A G 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;DP=135;Dels=0.00;FS=19.363;HaplotypeScore=6.5376;MLEAC=1;MLEAF=0.500;MQ=43.03;MQ0=18;MQRankSum=-4.665;QD=1.07;ReadPosRankSum=0.389;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,27:135:99:174,0,1894 chrXII 1060360 . G A 659.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.924;DP=187;Dels=0.00;FS=22.075;HaplotypeScore=56.3439;MLEAC=1;MLEAF=0.500;MQ=48.84;MQ0=9;MQRankSum=4.718;QD=3.52;ReadPosRankSum=-0.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,47:187:99:689,0,2545 chrXII 1060363 . T G 903.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.387;DP=187;Dels=0.00;FS=54.079;HaplotypeScore=54.6153;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=9;MQRankSum=-5.599;QD=4.83;ReadPosRankSum=0.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:121,66:187:99:933,0,2196 chrXII 1060386 . C T 877.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.874;DP=174;Dels=0.00;FS=35.584;HaplotypeScore=9.2539;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=9;MQRankSum=-4.526;QD=5.04;ReadPosRankSum=1.239;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,67:174:99:907,0,1911 chrXII 1060403 . C T 1011.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.344;DP=179;Dels=0.00;FS=72.856;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=50.77;MQ0=9;MQRankSum=4.738;QD=5.65;ReadPosRankSum=-1.426;SB=-5.180e+02 GT:AD:DP:GQ:PL 0/1:114,62:179:99:1041,0,1918 chrXII 1060417 . C T 1064.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;DP=182;Dels=0.00;FS=32.261;HaplotypeScore=12.2625;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=10;MQRankSum=-3.711;QD=5.85;ReadPosRankSum=-0.523;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:98,83:182:99:1094,0,1682 chrXII 1060435 . G A 781.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.999;DP=183;Dels=0.00;FS=62.734;HaplotypeScore=37.2680;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=9;MQRankSum=3.085;QD=4.27;ReadPosRankSum=1.178;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:120,61:183:99:811,0,1934 chrXII 1060444 . C T 195.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DP=178;Dels=0.00;FS=3.739;HaplotypeScore=49.3835;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=10;MQRankSum=-2.671;QD=1.10;ReadPosRankSum=-0.021;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:138,40:178:99:225,0,2260 chrXII 1060460 . A G 3332.01 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=9;QD=19.26;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3332,378,0 chrXII 1060506 . C T 546.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;DP=211;Dels=0.00;FS=41.518;HaplotypeScore=17.5377;MLEAC=1;MLEAF=0.500;MQ=47.87;MQ0=3;MQRankSum=-0.306;QD=2.59;ReadPosRankSum=-0.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:154,55:211:99:576,0,2793 chrXII 1060513 . T C 400.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786;DP=216;Dels=0.00;FS=43.803;HaplotypeScore=14.5242;MLEAC=1;MLEAF=0.500;MQ=46.98;MQ0=2;MQRankSum=-0.216;QD=1.85;ReadPosRankSum=-0.277;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:162,54:216:99:430,0,2989 chrXII 1060636 . A T 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.403;DP=321;Dels=0.00;FS=1.921;HaplotypeScore=19.5855;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=26;MQRankSum=-6.481;QD=0.81;ReadPosRankSum=0.045;SB=-1.440e+02 GT:AD:DP:GQ:PL 0/1:258,63:321:99:290,0,4271 chrXII 1060653 . T C 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.261;DP=290;Dels=0.00;FS=11.382;HaplotypeScore=16.1663;MLEAC=1;MLEAF=0.500;MQ=47.96;MQ0=21;MQRankSum=-6.748;QD=0.48;ReadPosRankSum=2.786;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:232,54:290:99:168,0,4505 chrXII 1060657 . A G 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.278;DP=277;Dels=0.00;FS=9.889;HaplotypeScore=9.6653;MLEAC=1;MLEAF=0.500;MQ=47.94;MQ0=20;MQRankSum=-6.151;QD=0.61;ReadPosRankSum=2.791;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:224,53:277:99:198,0,4399 chrXII 1060717 . C T 808.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DP=225;Dels=0.00;FS=6.725;HaplotypeScore=14.4404;MLEAC=1;MLEAF=0.500;MQ=47.73;MQ0=5;MQRankSum=1.547;QD=3.59;ReadPosRankSum=1.724;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:165,59:225:99:838,0,2807 chrXII 1060722 . T C 715.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.667;DP=222;Dels=0.00;FS=2.772;HaplotypeScore=16.0297;MLEAC=1;MLEAF=0.500;MQ=47.18;MQ0=6;MQRankSum=1.121;QD=3.22;ReadPosRankSum=-0.084;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:159,61:222:99:745,0,2559 chrXII 1060768 . G T 433.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DP=191;Dels=0.00;FS=4.646;HaplotypeScore=14.4244;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=6;MQRankSum=-0.923;QD=2.27;ReadPosRankSum=-1.503;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:144,47:191:99:463,0,2166 chrXII 1060896 . G A 2284.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.467;DP=232;Dels=0.00;FS=34.661;HaplotypeScore=15.7736;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=16;MQRankSum=8.121;QD=9.84;ReadPosRankSum=0.931;SB=-8.530e+02 GT:AD:DP:GQ:PL 0/1:96,136:232:99:2314,0,616 chrXII 1060901 . C A 528.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.231;DP=233;Dels=0.00;FS=49.103;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=43.74;MQ0=18;MQRankSum=-8.277;QD=2.27;ReadPosRankSum=-1.074;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,97:233:99:558,0,2451 chrXII 1060931 . C G 955.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;DP=254;Dels=0.00;FS=19.264;HaplotypeScore=14.5114;MLEAC=1;MLEAF=0.500;MQ=45.53;MQ0=12;MQRankSum=4.852;QD=3.76;ReadPosRankSum=-1.851;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:184,67:254:99:985,0,2773 chrXII 1061054 . A G 1338.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310;DP=167;Dels=0.00;FS=0.583;HaplotypeScore=36.8532;MLEAC=1;MLEAF=0.500;MQ=41.24;MQ0=5;MQRankSum=-1.311;QD=8.01;ReadPosRankSum=2.109;SB=-7.300e+02 GT:AD:DP:GQ:PL 0/1:83,84:167:99:1368,0,1171 chrXII 1061080 . C T 1017.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.010;DP=148;Dels=0.00;FS=6.227;HaplotypeScore=28.8886;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=7;MQRankSum=0.477;QD=6.87;ReadPosRankSum=0.798;SB=-7.070e+02 GT:AD:DP:GQ:PL 0/1:72,75:148:99:1047,0,976 chrXII 1061083 . A G 2385 filter AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=29.6226;MLEAC=2;MLEAF=1.00;MQ=36.23;MQ0=7;QD=16.34;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:2418,273,0 chrXII 1061101 . G A 2727 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.376;DP=154;Dels=0.00;FS=66.364;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=6;MQRankSum=-0.619;QD=17.71;ReadPosRankSum=-0.071;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:17,136:154:99:2760,189,0 chrXII 1061138 . G A 554.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;DP=153;Dels=0.00;FS=3.752;HaplotypeScore=6.1645;MLEAC=1;MLEAF=0.500;MQ=39.49;MQ0=6;MQRankSum=-0.807;QD=3.62;ReadPosRankSum=0.734;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:98,54:153:99:584,0,1392 chrXII 1061159 . A G 2062 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=5.356;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=5;MQRankSum=-0.450;QD=15.62;ReadPosRankSum=1.705;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2095,243,0 chrXII 1061166 . G A 856.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;DP=127;Dels=0.00;FS=1.577;HaplotypeScore=4.0265;MLEAC=1;MLEAF=0.500;MQ=35.94;MQ0=6;MQRankSum=0.862;QD=6.74;ReadPosRankSum=0.657;SB=-2.190e+02 GT:AD:DP:GQ:PL 0/1:61,66:127:99:886,0,723 chrXII 1061174 . T C,G 1700.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8302;MLEAC=1,1;MLEAF=0.500,0.500;MQ=35.68;MQ0=7;QD=13.60;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/2:0,62,63:125:99:1760,920,818,840,0,723 chrXII 1061193 . A C 736.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=118;Dels=0.00;FS=5.413;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=32.66;MQ0=11;MQRankSum=-0.874;QD=6.24;ReadPosRankSum=0.772;SB=-4.420e+02 GT:AD:DP:GQ:PL 0/1:38,80:118:99:766,0,371 chrXII 1061217 . A C 356.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.604;DP=98;Dels=0.00;FS=32.441;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=22;MQRankSum=-0.728;QD=3.63;ReadPosRankSum=0.257;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:34,64:98:99:386,0,407 chrXII 1061267 . T C 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;DP=126;Dels=0.00;FS=0.891;HaplotypeScore=13.0761;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=32;MQRankSum=-0.058;QD=2.90;ReadPosRankSum=1.362;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:88,38:126:99:395,0,699 chrXII 1061288 . G A 574.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;DP=120;Dels=0.00;FS=1.800;HaplotypeScore=3.3029;MLEAC=1;MLEAF=0.500;MQ=32.39;MQ0=28;MQRankSum=3.225;QD=4.78;ReadPosRankSum=-1.935;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:64,56:120:99:604,0,524 chrXII 1061307 . T C 603.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;DP=117;Dels=0.00;FS=0.814;HaplotypeScore=11.1820;MLEAC=1;MLEAF=0.500;MQ=34.02;MQ0=23;MQRankSum=3.739;QD=5.15;ReadPosRankSum=1.201;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:57,58:117:99:633,0,420 chrXII 1061320 . C T 331.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;DP=106;Dels=0.00;FS=3.051;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.69;MQ0=21;MQRankSum=-2.563;QD=3.12;ReadPosRankSum=-3.777;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:56,50:106:99:361,0,714 chrXII 1061356 . A G 301.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DP=86;Dels=0.00;FS=0.940;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=10;MQRankSum=-0.685;QD=3.50;ReadPosRankSum=1.414;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:46,40:86:99:331,0,511 chrXII 1061365 . A G 465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.476;DP=92;Dels=0.00;FS=1.968;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=11;MQRankSum=-0.964;QD=5.05;ReadPosRankSum=-1.758;SB=-2.300e+02 GT:AD:DP:GQ:PL 0/1:54,38:92:99:495,0,540 chrXII 1061392 . T G 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.921;DP=95;Dels=0.00;FS=12.557;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=40.29;MQ0=11;MQRankSum=-4.182;QD=1.93;ReadPosRankSum=-2.044;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:58,35:95:99:213,0,788 chrXII 1061402 . A C 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.034;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=41.88;MQ0=9;MQRankSum=-3.249;QD=1.34;ReadPosRankSum=0.488;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:58,31:89:99:149,0,877 chrXII 1061423 . T A 775.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;DP=109;Dels=0.00;FS=6.205;HaplotypeScore=8.5737;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=11;MQRankSum=2.897;QD=7.11;ReadPosRankSum=0.221;SB=-4.110e+02 GT:AD:DP:GQ:PL 0/1:50,56:109:99:805,0,442 chrXII 1061521 . A T 430.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.486;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=1;MLEAF=0.500;MQ=37.66;MQ0=1;MQRankSum=-3.118;QD=3.41;ReadPosRankSum=0.879;SB=-1.820e+02 GT:AD:DP:GQ:PL 0/1:68,58:126:99:460,0,814 chrXII 1061526 . A G 213.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.435;DP=115;Dels=0.00;FS=3.441;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=36.40;MQ0=1;MQRankSum=-3.995;QD=1.85;ReadPosRankSum=-0.329;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:58,57:115:99:243,0,965 chrXII 1061545 . T G 86.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.774;DP=104;Dels=0.00;FS=0.849;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=31.00;MQ0=3;MQRankSum=-5.310;QD=0.83;ReadPosRankSum=-0.730;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:52,52:104:99:116,0,814 chrXII 1061546 . G A 103.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.253;DP=106;Dels=0.00;FS=0.849;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=3;MQRankSum=-5.005;QD=0.97;ReadPosRankSum=-0.554;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:52,52:106:99:133,0,779 chrXII 1061567 . G T 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.461;DP=117;Dels=0.00;FS=8.335;HaplotypeScore=4.2151;MLEAC=1;MLEAF=0.500;MQ=25.33;MQ0=5;MQRankSum=-5.690;QD=1.44;ReadPosRankSum=-1.000;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:39,78:117:99:198,0,554 chrXII 1061569 . T C 168.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DP=117;Dels=0.00;FS=6.350;HaplotypeScore=4.2151;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=6;MQRankSum=-5.058;QD=1.44;ReadPosRankSum=-0.178;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:41,76:117:99:198,0,569 chrXII 1061574 . G A 186.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.607;DP=121;Dels=0.00;FS=10.412;HaplotypeScore=3.2992;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=6;MQRankSum=-5.155;QD=1.54;ReadPosRankSum=-0.842;SB=-1.300e+02 GT:AD:DP:GQ:PL 0/1:39,82:121:99:216,0,555 chrXII 1061577 . C G 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374;DP=129;Dels=0.00;FS=9.331;HaplotypeScore=40.5781;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=6;MQRankSum=-5.304;QD=1.68;ReadPosRankSum=-0.703;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:40,86:129:99:247,0,574 chrXII 1061598 . T A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;DP=133;Dels=0.00;FS=2.489;HaplotypeScore=9.8040;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=8;MQRankSum=-4.530;QD=0.69;ReadPosRankSum=2.849;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:59,74:133:99:122,0,810 chrXII 1061635 . C T 493.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;DP=129;Dels=0.00;FS=3.512;HaplotypeScore=18.4840;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=8;MQRankSum=-1.080;QD=3.82;ReadPosRankSum=-0.815;SB=-2.960e+02 GT:AD:DP:GQ:PL 0/1:53,72:129:99:523,0,638 chrXII 1061676 . G A 594.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.474;DP=121;Dels=0.00;FS=1.718;HaplotypeScore=29.7659;MLEAC=1;MLEAF=0.500;MQ=31.40;MQ0=3;MQRankSum=0.061;QD=4.91;ReadPosRankSum=0.986;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:73,48:121:99:624,0,1101 chrXII 1061678 . A T 197.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;DP=120;Dels=0.00;FS=5.013;HaplotypeScore=53.0281;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=3;MQRankSum=2.447;QD=1.64;ReadPosRankSum=1.414;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:96,24:120:99:227,0,1457 chrXII 1061688 . G A 985.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.353;DP=126;Dels=0.00;FS=13.026;HaplotypeScore=32.6838;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=3;MQRankSum=3.002;QD=7.82;ReadPosRankSum=1.796;SB=-4.250e+02 GT:AD:DP:GQ:PL 0/1:58,68:126:99:1015,0,764 chrXII 1061695 . T C 816.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.143;DP=128;Dels=0.00;FS=16.113;HaplotypeScore=2.5243;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=3;MQRankSum=2.274;QD=6.38;ReadPosRankSum=0.525;SB=-4.440e+02 GT:AD:DP:GQ:PL 0/1:61,66:128:99:846,0,847 chrXII 1061714 . G C 841.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;DP=117;Dels=0.00;FS=21.172;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=2;MQRankSum=-2.296;QD=7.19;ReadPosRankSum=4.019;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,58:117:99:871,0,755 chrXII 1061733 . G C 329.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.129;DP=90;Dels=0.00;FS=27.800;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=1;MQRankSum=1.865;QD=3.66;ReadPosRankSum=-2.220;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:50,40:90:99:359,0,745 chrXII 1061735 . A G 320.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.718;DP=88;Dels=0.00;FS=33.994;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=1;MQRankSum=1.964;QD=3.64;ReadPosRankSum=-1.767;SB=-9.402e+01 GT:AD:DP:GQ:PL 0/1:49,39:88:99:350,0,758 chrXII 1061752 . T C 332.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119;DP=74;Dels=0.00;FS=58.953;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=1;MQRankSum=3.285;QD=4.49;ReadPosRankSum=1.308;SB=-4.402e+01 GT:AD:DP:GQ:PL 0/1:38,36:74:99:362,0,597 chrXII 1061753 . T G 484.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;DP=71;Dels=0.00;FS=51.434;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=32.08;MQ0=1;MQRankSum=-2.995;QD=6.82;ReadPosRankSum=-1.326;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:36,35:71:99:514,0,344 chrXII 1061759 . A G 1072 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=3.882;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=2;MQRankSum=1.102;QD=15.76;ReadPosRankSum=1.680;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1105,135,0 chrXII 1061760 . G T 405.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;DP=69;Dels=0.00;FS=66.261;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.45;MQ0=2;MQRankSum=-3.310;QD=5.87;ReadPosRankSum=-2.213;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:39,30:69:99:435,0,439 chrXII 1061791 . A C 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;DP=44;Dels=0.00;FS=1.670;HaplotypeScore=23.8772;MLEAC=1;MLEAF=0.500;MQ=43.96;MQ0=4;MQRankSum=-2.502;QD=1.50;ReadPosRankSum=-0.500;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:25,9:44:96:96,0,542 chrXII 1061805 . A T 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;DP=52;Dels=0.00;FS=3.066;HaplotypeScore=14.1367;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=4;MQRankSum=-4.753;QD=4.27;ReadPosRankSum=-0.278;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:24,28:52:99:252,0,458 chrXII 1061807 . G A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DP=52;Dels=0.00;FS=1.536;HaplotypeScore=14.9254;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=4;MQRankSum=-2.784;QD=0.22;ReadPosRankSum=-1.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,16:52:41:41,0,616 chrXII 1061818 . A T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DP=58;Dels=0.00;FS=3.276;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=39.74;MQ0=5;MQRankSum=-1.466;QD=1.40;ReadPosRankSum=2.226;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:45,13:58:99:111,0,628 chrXII 1061824 . G C 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;DP=55;Dels=0.00;FS=5.353;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=38.18;MQ0=5;MQRankSum=-0.632;QD=1.47;ReadPosRankSum=2.974;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:43,12:55:99:111,0,580 chrXII 1061902 . T G 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=109;Dels=0.00;FS=8.492;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=3;MQRankSum=-1.013;QD=7.61;ReadPosRankSum=1.634;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:863,99,0 chrXII 1061917 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=2;QD=9.09;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1096,120,0 chrXII 1061984 . T C 157.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963;DP=127;Dels=0.00;FS=31.261;HaplotypeScore=12.0204;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=13;MQRankSum=0.762;QD=1.24;ReadPosRankSum=0.131;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,31:127:99:187,0,902 chrXII 1061987 . T C 161.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DP=124;Dels=0.00;FS=34.605;HaplotypeScore=12.8871;MLEAC=1;MLEAF=0.500;MQ=25.73;MQ0=13;MQRankSum=0.090;QD=1.30;ReadPosRankSum=-0.030;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,33:124:99:191,0,813 chrXII 1061990 . C G 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DP=121;Dels=0.00;FS=35.619;HaplotypeScore=12.0984;MLEAC=1;MLEAF=0.500;MQ=25.55;MQ0=13;MQRankSum=-0.498;QD=1.36;ReadPosRankSum=-0.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,34:121:99:194,0,750 chrXII 1062016 . G A 833 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.9016;MLEAC=2;MLEAF=1.00;MQ=23.48;MQ0=14;QD=8.77;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,70:95:93:866,93,0 chrXII 1062024 . C T 415.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=87;Dels=0.00;FS=38.779;HaplotypeScore=8.7469;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=14;MQRankSum=0.039;QD=4.77;ReadPosRankSum=0.622;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:38,49:87:99:445,0,278 chrXII 1062072 . A G 472 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=22.31;MQ0=1;MQRankSum=0.469;QD=9.63;ReadPosRankSum=2.854;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:3,46:49:60:505,60,0 chrXII 1062074 . T C 464 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=22.12;MQ0=1;QD=10.31;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:60:497,60,0 chrXII 1062078 . T C 419 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.046;DP=43;Dels=0.00;FS=2.739;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=22.86;MQ0=1;MQRankSum=1.080;QD=9.74;ReadPosRankSum=0.439;SB=-8.198e+01 GT:AD:DP:GQ:PL 1/1:7,36:43:31:452,31,0 chrXII 1062086 . C T 497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.478;DP=52;Dels=0.00;FS=2.396;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=2;MQRankSum=1.329;QD=9.56;ReadPosRankSum=1.776;SB=-9.899e+01 GT:AD:DP:GQ:PL 1/1:6,46:52:40:530,40,0 chrXII 1062109 . A G 68.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;DP=29;Dels=0.00;FS=3.927;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=2;MQRankSum=0.504;QD=2.35;ReadPosRankSum=0.929;SB=-2.006e+00 GT:AD:DP:GQ:PL 0/1:21,8:29:98:98,0,138 chrXII 1062188 . G A 577.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;DP=112;Dels=0.00;FS=0.898;HaplotypeScore=28.5775;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=3;MQRankSum=1.412;QD=5.15;ReadPosRankSum=0.917;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:72,39:112:99:607,0,1149 chrXII 1062213 . A G 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;DP=117;Dels=0.00;FS=1.354;HaplotypeScore=26.9884;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=2;MQRankSum=3.750;QD=17.12;ReadPosRankSum=3.674;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:16,98:117:72:2036,72,0 chrXII 1062218 . C G 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;DP=118;Dels=0.00;FS=8.131;HaplotypeScore=26.1997;MLEAC=1;MLEAF=0.500;MQ=31.29;MQ0=1;MQRankSum=-0.162;QD=2.32;ReadPosRankSum=1.404;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,23:118:99:304,0,1687 chrXII 1062248 . C T 368.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=15.4085;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=1;MQRankSum=-0.152;QD=3.29;ReadPosRankSum=0.113;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:77,35:112:99:398,0,1270 chrXII 1062349 . A G 283 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.287;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=17.85;MQ0=6;MQRankSum=1.590;QD=4.88;ReadPosRankSum=-1.939;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:15,43:58:36:316,36,0 chrXII 1062367 . C T 50.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.191;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=15.4729;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=1;MQRankSum=1.625;QD=1.54;ReadPosRankSum=-1.300;SB=-7.885e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:9:83,9,0 chrXII 1062435 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;DP=22;Dels=0.00;FS=3.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.80;MQ0=4;MQRankSum=1.111;QD=2.55;ReadPosRankSum=-0.133;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:12,10:22:32:86,0,32 chrXII 1062441 . G A 126.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.59;MQ0=4;QD=5.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:18:159,18,0 chrXII 1062442 . C T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.59;MQ0=4;MQRankSum=1.021;QD=2.70;ReadPosRankSum=0.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:13,10:23:32:92,0,32 chrXII 1062474 . A T 155.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.9094;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=3;MQRankSum=2.928;QD=3.89;ReadPosRankSum=1.211;SB=0.471 GT:AD:DP:GQ:PL 1/1:18,22:40:4:186,4,0 chrXII 1062492 . A G 563 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.052;DP=58;Dels=0.00;FS=55.650;HaplotypeScore=35.3174;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=2;MQRankSum=-1.448;QD=9.71;ReadPosRankSum=0.779;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:4,54:58:66:596,66,0 chrXII 1062495 . T C 183.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;DP=63;Dels=0.00;FS=13.120;HaplotypeScore=27.3653;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=2;MQRankSum=1.518;QD=2.90;ReadPosRankSum=-1.690;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,20:63:99:213,0,261 chrXII 1062514 . C G 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;DP=76;Dels=0.00;FS=2.308;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=2;MQRankSum=2.253;QD=0.55;ReadPosRankSum=-0.277;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,10:76:72:72,0,523 chrXII 1062523 . A G 731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.380;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.4940;MLEAC=2;MLEAF=1.00;MQ=23.80;MQ0=2;MQRankSum=1.545;QD=8.91;ReadPosRankSum=2.912;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:87:764,87,0 chrXII 1062544 . A G 386.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;DP=92;Dels=0.00;FS=61.396;HaplotypeScore=121.1705;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=3;MQRankSum=2.852;QD=4.20;ReadPosRankSum=3.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,44:92:99:416,0,263 chrXII 1062552 . C A 132.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.781;DP=81;Dels=0.00;FS=20.940;HaplotypeScore=109.8993;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=2;MQRankSum=2.169;QD=1.63;ReadPosRankSum=1.394;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,15:81:99:162,0,467 chrXII 1062553 . A G 426.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.909;DP=83;Dels=0.00;FS=85.453;HaplotypeScore=110.6880;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=2;MQRankSum=2.635;QD=5.13;ReadPosRankSum=0.323;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,44:83:99:456,0,242 chrXII 1062559 . G A 227.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;DP=85;Dels=0.00;FS=65.264;HaplotypeScore=102.4798;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=2;MQRankSum=-0.429;QD=2.67;ReadPosRankSum=1.618;SB=-1.890e+02 GT:AD:DP:GQ:PL 0/1:50,35:85:99:257,0,497 chrXII 1062562 . C G 141.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=64.8521;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=4;MQRankSum=-0.157;QD=1.52;ReadPosRankSum=0.962;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,20:93:99:171,0,541 chrXII 1062566 . A C 164.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081;DP=106;Dels=0.00;FS=31.310;HaplotypeScore=69.4658;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=4;MQRankSum=1.874;QD=1.55;ReadPosRankSum=0.004;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,24:106:99:194,0,582 chrXII 1062573 . T C 149.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.994;DP=99;Dels=0.00;FS=35.944;HaplotypeScore=53.0091;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=4;MQRankSum=1.698;QD=1.51;ReadPosRankSum=0.365;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,24:99:99:179,0,523 chrXII 1062574 . T A 204.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;DP=96;Dels=0.00;FS=28.258;HaplotypeScore=65.2174;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=4;MQRankSum=-1.288;QD=2.13;ReadPosRankSum=3.307;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:55,41:96:99:234,0,466 chrXII 1062575 . C T 213.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.972;DP=97;Dels=0.00;FS=30.822;HaplotypeScore=64.4287;MLEAC=1;MLEAF=0.500;MQ=26.33;MQ0=4;MQRankSum=-1.278;QD=2.20;ReadPosRankSum=3.154;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:55,42:97:99:243,0,366 chrXII 1062580 . T C 374.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=70.2020;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=4;MQRankSum=-1.466;QD=3.60;ReadPosRankSum=2.675;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:43,61:104:99:404,0,249 chrXII 1062650 . A G 109.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;DP=221;Dels=0.00;FS=23.279;HaplotypeScore=9.9520;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=28;MQRankSum=0.797;QD=0.49;ReadPosRankSum=0.994;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:175,46:221:99:139,0,1129 chrXII 1062672 . G C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;DP=180;Dels=0.00;FS=59.680;HaplotypeScore=27.4251;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=27;MQRankSum=0.647;QD=0.22;ReadPosRankSum=-0.339;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:150,27:180:69:69,0,883 chrXII 1062793 . A G 417 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.38;MQ0=3;QD=15.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:54:450,54,0 chrXII 1062813 . C A 243 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=4;QD=13.50;SB=-2.200e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:276,33,0 chrXII 1062816 . G A 218.33 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.156;DP=18;Dels=0.00;FS=6.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.11;MQ0=4;MQRankSum=2.491;QD=12.13;ReadPosRankSum=-0.623;SB=-3.349e-01 GT:AD:DP:GQ:PL 1/1:7,11:18:14:251,14,0 chrXII 1062869 . C A 564 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.861;DP=55;Dels=0.00;FS=8.624;HaplotypeScore=16.4434;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=9;MQRankSum=2.279;QD=10.25;ReadPosRankSum=-0.564;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:5,44:55:66:597,66,0 chrXII 1062896 . C T 567 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.553;DP=72;Dels=0.00;FS=20.573;HaplotypeScore=5.0403;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=10;MQRankSum=4.509;QD=7.87;ReadPosRankSum=2.965;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:29,43:72:45:600,45,0 chrXII 1062942 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DP=61;Dels=0.00;FS=21.756;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=10;MQRankSum=1.927;QD=0.89;ReadPosRankSum=-0.253;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,28:61:84:84,0,95 chrXII 1062966 . T C 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;DP=83;Dels=0.00;FS=7.055;HaplotypeScore=7.4411;MLEAC=1;MLEAF=0.500;MQ=17.17;MQ0=15;MQRankSum=2.931;QD=0.35;ReadPosRankSum=-0.566;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,12:83:59:59,0,224 chrXII 1062988 . A C 208.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=13;MQRankSum=-1.045;QD=2.67;ReadPosRankSum=2.298;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:2,76:78:27:241,27,0 chrXII 1063020 . T G 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=1;MLEAF=0.500;MQ=15.98;MQ0=18;MQRankSum=-0.163;QD=0.41;ReadPosRankSum=0.337;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,21:70:59:59,0,88 chrXII 1063110 . T C 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.446;DP=54;Dels=0.00;FS=3.873;HaplotypeScore=4.1929;MLEAC=1;MLEAF=0.500;MQ=18.39;MQ0=12;MQRankSum=2.138;QD=3.48;ReadPosRankSum=-0.453;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:28,26:54:45:218,0,45 chrXII 1063404 . A G 212.01 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.75;MQ0=7;QD=8.83;SB=-7.496e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:27:245,27,0 chrXII 1063441 . T C 632 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;DP=40;Dels=0.00;FS=2.808;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=4;MQRankSum=0.035;QD=15.80;ReadPosRankSum=0.380;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:4,36:40:78:665,78,0 chrXII 1063569 . G T 318.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=3;MQRankSum=1.671;QD=10.97;ReadPosRankSum=3.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,18:29:27:348,0,27 chrXII 1063572 . T C 253.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.486;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=3;MQRankSum=3.524;QD=7.23;ReadPosRankSum=3.335;SB=-6.513e-03 GT:AD:DP:GQ:PL 0/1:18,17:35:60:283,0,60 chrXII 1063576 . C A 237.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=4;MQRankSum=3.679;QD=6.97;ReadPosRankSum=2.889;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:19,15:34:63:267,0,63 chrXII 1063736 . T C 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=1;QD=5.37;SB=-4.347e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:75,9,0 chrXII 1063737 . G T 16.98 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=1;QD=2.12;SB=-1.039e+01 GT:AD:DP:GQ:PL 1/1:0,6:8:6:48,6,0 chrXII 1063745 . C T 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=1;QD=7.17;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:12:97,12,0 chrXII 1063748 . A G 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;QD=8.56;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:101,12,0 chrXII 1063753 . C A 42.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.37;MQ0=0;MQRankSum=0.736;QD=7.04;ReadPosRankSum=0.736;SB=-2.962e+00 GT:AD:DP:GQ:PL 0/1:1,5:6:10:72,0,10 chrXII 1063757 . G T 47.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DP=10;Dels=0.00;FS=10.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=0;MQRankSum=0.696;QD=4.72;ReadPosRankSum=-0.348;SB=-3.160e+00 GT:AD:DP:GQ:PL 0/1:1,9:10:10:77,0,10 chrXII 1063761 . C G 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=23.93;MQ0=0;QD=6.59;SB=-2.245e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:105,12,0 chrXII 1063779 . C T 237.33 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.963;DP=27;Dels=0.00;FS=6.532;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=25.75;MQ0=0;MQRankSum=0.835;QD=8.79;ReadPosRankSum=-1.605;SB=-5.334e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:14:270,14,0 chrXII 1063785 . C T 318 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=10.97;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:351,45,0 chrXII 1063787 . G A 372.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=36;Dels=0.00;FS=29.251;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;MQRankSum=1.233;QD=10.33;ReadPosRankSum=0.579;SB=-4.702e+01 GT:AD:DP:GQ:PL 1/1:4,32:36:29:405,29,0 chrXII 1063800 . A G 479 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=1;QD=10.89;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:512,60,0 chrXII 1063802 . G A 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=46;Dels=0.02;FS=6.435;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=1;MQRankSum=0.551;QD=11.13;ReadPosRankSum=0.472;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:63:545,63,0 chrXII 1063872 . C T 400 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=5;QD=8.51;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:48:433,48,0 chrXII 1063897 . T A 132.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.94;MQ0=4;QD=4.56;SB=-7.011e+01 GT:AD:DP:GQ:PL 1/1:2,27:29:18:165,18,0 chrXII 1063900 . C T 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.35;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:102,12,0 chrXII 1063901 . C A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.65;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:106,12,0 chrXII 1063905 . A T 72.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.58;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:0,12:13:12:105,12,0 chrXII 1063906 . A G 70.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.42;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:103,12,0 chrXII 1063907 . A G 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.35;SB=-4.326e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:102,12,0 chrXII 1063917 . A G 46.97 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=0;QD=2.76;SB=-6.596e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:9:79,9,0 chrXII 1063985 . G A 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=9.2940;MLEAC=2;MLEAF=1.00;MQ=17.54;MQ0=13;MQRankSum=3.962;QD=0.92;ReadPosRankSum=-2.647;SB=-8.197e+01 GT:AD:DP:GQ:PL 1/1:31,17:48:9:76,9,0 chrXII 1063988 . T C 47.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=49;Dels=0.00;FS=20.338;HaplotypeScore=8.3206;MLEAC=2;MLEAF=1.00;MQ=17.68;MQ0=14;MQRankSum=2.475;QD=0.98;ReadPosRankSum=-1.344;SB=2.04 GT:AD:DP:GQ:PL 1/1:43,6:49:9:80,9,0 chrXII 1064046 . A T 1241 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=84;Dels=0.00;FS=36.198;HaplotypeScore=18.9654;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=19;MQRankSum=1.652;QD=14.77;ReadPosRankSum=1.652;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,80:84:99:1274,132,0 chrXII 1064078 . T G 2048 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7858;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=9;QD=17.07;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,111:120:99:2081,240,0 chrXII 1064102 . C G 2464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.791;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=47.2373;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=2;MQRankSum=2.765;QD=19.25;ReadPosRankSum=0.598;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:5,122:128:99:2497,294,0 chrXII 1064153 . G T 1511.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;DP=112;Dels=0.00;FS=92.046;HaplotypeScore=24.7815;MLEAC=1;MLEAF=0.500;MQ=32.77;MQ0=2;MQRankSum=4.533;QD=13.49;ReadPosRankSum=-0.700;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:28,84:112:85:1541,0,85 chrXII 1064156 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=14.4345;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=2;QD=17.49;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2009,248,0 chrXII 1064167 . C G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870;DP=112;Dels=0.00;FS=38.468;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=1;MQRankSum=2.833;QD=14.22;ReadPosRankSum=-3.546;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:13,98:112:99:1626,117,0 chrXII 1064192 . A T 690.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DP=83;Dels=0.00;FS=56.309;HaplotypeScore=6.5268;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=1;MQRankSum=1.652;QD=8.31;ReadPosRankSum=-2.004;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:25,58:83:99:720,0,151 chrXII 1064204 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;DP=74;Dels=0.00;FS=19.903;HaplotypeScore=5.3261;MLEAC=1;MLEAF=0.500;MQ=18.00;MQ0=1;MQRankSum=-0.162;QD=0.18;ReadPosRankSum=3.015;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,11:74:43:43,0,629 chrXII 1064224 . C T 219 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=1;QD=5.62;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:33:252,33,0 chrXII 1064246 . C A 60.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;DP=42;Dels=0.00;FS=9.201;HaplotypeScore=12.1748;MLEAC=1;MLEAF=0.500;MQ=16.25;MQ0=0;MQRankSum=1.888;QD=1.43;ReadPosRankSum=-0.401;SB=-7.675e+00 GT:AD:DP:GQ:PL 0/1:31,11:42:45:90,0,45 chrXII 1064256 . G A 234.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.902;DP=39;Dels=0.00;FS=9.652;HaplotypeScore=15.7989;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=0;MQRankSum=2.775;QD=6.01;ReadPosRankSum=-0.268;SB=-2.796e+01 GT:AD:DP:GQ:PL 1/1:21,18:39:13:267,13,0 chrXII 1064262 . G A 320.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DP=36;Dels=0.00;FS=2.873;HaplotypeScore=33.9238;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;MQRankSum=3.549;QD=8.89;ReadPosRankSum=-1.711;SB=-1.259e+02 GT:AD:DP:GQ:PL 1/1:17,19:36:23:353,23,0 chrXII 1064292 . T A 1283 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=24.2807;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=5;MQRankSum=1.493;QD=13.95;ReadPosRankSum=1.692;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1316,147,0 chrXII 1064305 . G A 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=105;Dels=0.01;FS=18.943;HaplotypeScore=15.5743;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=11;MQRankSum=0.639;QD=1.35;ReadPosRankSum=-3.369;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:86,18:104:99:172,0,882 chrXII 1064339 . A G 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DP=235;Dels=0.00;FS=10.741;HaplotypeScore=35.1337;MLEAC=1;MLEAF=0.500;MQ=33.23;MQ0=13;MQRankSum=-3.414;QD=0.11;ReadPosRankSum=-0.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:203,32:235:55:55,0,3019 chrXII 1064340 . G A 2537.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.616;DP=234;Dels=0.00;FS=14.247;HaplotypeScore=35.1337;MLEAC=1;MLEAF=0.500;MQ=33.21;MQ0=13;MQRankSum=5.183;QD=10.84;ReadPosRankSum=-1.858;SB=-1.098e+03 GT:AD:DP:GQ:PL 0/1:92,142:234:99:2567,0,667 chrXII 1064363 . G A 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DP=229;Dels=0.00;FS=5.502;HaplotypeScore=161.9298;MLEAC=1;MLEAF=0.500;MQ=34.70;MQ0=13;MQRankSum=4.214;QD=1.40;ReadPosRankSum=-0.892;SB=-1.546e+03 GT:AD:DP:GQ:PL 0/1:24,205:229:99:351,0,246 chrXII 1064375 . T A 3835.01 filter AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.4155;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=13;QD=18.09;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,212:212:99:3835,432,0 chrXII 1064432 . T G 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.259;DP=86;Dels=0.01;FS=12.480;HaplotypeScore=19.3837;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=1;MQRankSum=-1.485;QD=12.48;ReadPosRankSum=1.867;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:6,79:85:47:1106,47,0 chrXII 1064435 . T A 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.1131;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=1;MQRankSum=-1.526;QD=14.60;ReadPosRankSum=1.691;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1274,150,0 chrXII 1064445 . C T 1007 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377;DP=70;Dels=0.00;FS=19.232;HaplotypeScore=19.3698;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=1;MQRankSum=1.127;QD=14.39;ReadPosRankSum=2.092;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1040,126,0 chrXII 1064447 . A G 988 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=20.1584;MLEAC=2;MLEAF=1.00;MQ=20.83;MQ0=1;MQRankSum=-0.577;QD=13.92;ReadPosRankSum=1.682;SB=-9.301e+01 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1021,126,0 chrXII 1064449 . G A 755.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.984;DP=72;Dels=0.00;FS=16.788;HaplotypeScore=20.1584;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=1;MQRankSum=1.857;QD=10.49;ReadPosRankSum=3.172;SB=-3.104e+01 GT:AD:DP:GQ:PL 0/1:14,58:72:20:785,0,20 chrXII 1064452 . A G 833 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.699;DP=76;Dels=0.00;FS=22.825;HaplotypeScore=18.3868;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=2;MQRankSum=2.487;QD=10.96;ReadPosRankSum=3.064;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:14,61:76:52:866,52,0 chrXII 1064454 . T A 687.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;DP=80;Dels=0.00;FS=43.946;HaplotypeScore=19.5435;MLEAC=1;MLEAF=0.500;MQ=20.11;MQ0=2;MQRankSum=2.067;QD=8.59;ReadPosRankSum=3.888;SB=-1.602e+01 GT:AD:DP:GQ:PL 0/1:21,56:80:28:717,0,28 chrXII 1064488 . A G 120.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DP=137;Dels=0.00;FS=51.684;HaplotypeScore=118.5255;MLEAC=1;MLEAF=0.500;MQ=15.78;MQ0=3;MQRankSum=4.701;QD=0.88;ReadPosRankSum=-3.415;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,29:137:99:150,0,412 chrXII 1064491 . G A 63.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=138;Dels=0.00;FS=47.369;HaplotypeScore=75.1424;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=4;MQRankSum=4.532;QD=0.46;ReadPosRankSum=-4.249;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,22:138:93:93,0,442 chrXII 1064493 . A C 364.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.503;DP=138;Dels=0.00;FS=79.387;HaplotypeScore=75.1424;MLEAC=1;MLEAF=0.500;MQ=15.72;MQ0=4;MQRankSum=0.830;QD=2.64;ReadPosRankSum=-0.176;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:67,71:138:99:394,0,141 chrXII 1064494 . T G 64.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.568;DP=134;Dels=0.00;FS=54.101;HaplotypeScore=71.9876;MLEAC=1;MLEAF=0.500;MQ=15.67;MQ0=4;MQRankSum=-2.853;QD=0.48;ReadPosRankSum=0.220;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:99,35:134:94:94,0,418 chrXII 1064514 . A G 543 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.887;DP=139;Dels=0.00;FS=2.706;HaplotypeScore=10.6291;MLEAC=2;MLEAF=1.00;MQ=15.75;MQ0=5;MQRankSum=-1.868;QD=3.91;ReadPosRankSum=1.999;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:2,134:139:59:576,59,0 chrXII 1064541 . G T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;DP=153;Dels=0.00;FS=35.317;HaplotypeScore=8.8956;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=4;MQRankSum=1.930;QD=0.27;ReadPosRankSum=0.003;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,15:153:72:72,0,644 chrXII 1064542 . C A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.557;DP=154;Dels=0.00;FS=35.652;HaplotypeScore=8.8956;MLEAC=1;MLEAF=0.500;MQ=17.74;MQ0=4;MQRankSum=1.936;QD=0.21;ReadPosRankSum=-0.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,15:154:62:62,0,656 chrXII 1064557 . G A 97.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=91;Dels=0.00;FS=2.424;HaplotypeScore=17.1580;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=3;MQRankSum=3.255;QD=1.07;ReadPosRankSum=1.173;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:74,17:91:99:127,0,471 chrXII 1064561 . T C 267.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DP=73;Dels=0.04;FS=56.024;HaplotypeScore=17.1580;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=3;MQRankSum=-0.706;QD=3.66;ReadPosRankSum=1.634;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:29,41:70:99:297,0,329 chrXII 1064565 . C T 375 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=25.1607;MLEAC=2;MLEAF=1.00;MQ=21.70;MQ0=2;QD=5.68;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:48:408,48,0 chrXII 1064599 . G A 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;DP=89;Dels=0.01;FS=33.822;HaplotypeScore=131.1609;MLEAC=1;MLEAF=0.500;MQ=24.63;MQ0=7;MQRankSum=-2.508;QD=1.35;ReadPosRankSum=1.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,25:88:99:150,0,601 chrXII 1064609 . A G 215.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;DP=87;Dels=0.00;FS=24.661;HaplotypeScore=90.2757;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=9;MQRankSum=0.463;QD=2.47;ReadPosRankSum=-0.338;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:67,20:87:99:245,0,391 chrXII 1064643 . T C 488 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=68;Dels=0.00;FS=16.769;HaplotypeScore=10.2858;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=9;MQRankSum=-1.738;QD=7.18;ReadPosRankSum=2.367;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,66:68:63:521,63,0 chrXII 1064659 . A C 584 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.735;DP=74;Dels=0.00;FS=24.955;HaplotypeScore=9.8332;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=8;MQRankSum=1.539;QD=7.89;ReadPosRankSum=2.982;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:9,63:74:72:617,72,0 chrXII 1064693 . A T 525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.992;DP=56;Dels=0.00;FS=6.116;HaplotypeScore=45.3436;MLEAC=2;MLEAF=1.00;MQ=21.28;MQ0=2;MQRankSum=-1.351;QD=9.37;ReadPosRankSum=2.313;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:66:558,66,0 chrXII 1064716 . A G 458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5235;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=0;MQRankSum=0.645;QD=8.98;ReadPosRankSum=1.664;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:57:491,57,0 chrXII 1064738 . G A 277.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;DP=52;Dels=0.00;FS=44.891;HaplotypeScore=16.3406;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=1;MQRankSum=1.239;QD=5.34;ReadPosRankSum=0.819;SB=-1.627e+02 GT:AD:DP:GQ:PL 0/1:19,33:52:5:307,0,5 chrXII 1064756 . A G 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;DP=62;Dels=0.00;FS=15.551;HaplotypeScore=28.8573;MLEAC=1;MLEAF=0.500;MQ=22.00;MQ0=2;MQRankSum=0.722;QD=2.58;ReadPosRankSum=0.811;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:47,14:62:99:190,0,284 chrXII 1064797 . T C 111.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=71.2038;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=1;MQRankSum=1.630;QD=1.66;ReadPosRankSum=2.305;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:21,31:65:99:141,0,247 chrXII 1064798 . A G 236.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.409;DP=68;Dels=0.03;FS=11.814;HaplotypeScore=72.1905;MLEAC=1;MLEAF=0.500;MQ=21.71;MQ0=1;MQRankSum=1.103;QD=3.47;ReadPosRankSum=-2.366;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:47,19:66:99:266,0,182 chrXII 1064804 . G T 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;DP=66;Dels=0.00;FS=20.194;HaplotypeScore=87.0252;MLEAC=1;MLEAF=0.500;MQ=21.63;MQ0=1;MQRankSum=-0.590;QD=1.73;ReadPosRankSum=3.290;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:21,45:66:99:144,0,303 chrXII 1064805 . A G 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;DP=61;Dels=0.00;FS=14.560;HaplotypeScore=93.2171;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=1;MQRankSum=-0.802;QD=2.20;ReadPosRankSum=2.066;SB=-6.001e+01 GT:AD:DP:GQ:PL 0/1:16,45:61:99:164,0,157 chrXII 1064814 . A G 155.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;DP=80;Dels=0.05;FS=126.005;HaplotypeScore=78.5973;MLEAC=1;MLEAF=0.500;MQ=19.25;MQ0=0;MQRankSum=4.101;QD=1.94;ReadPosRankSum=0.444;SB=-1.279e+01 GT:AD:DP:GQ:PL 0/1:45,31:76:99:185,0,114 chrXII 1064816 . G T 149.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DP=74;Dels=0.03;FS=98.480;HaplotypeScore=57.4002;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=0;MQRankSum=4.392;QD=2.01;ReadPosRankSum=0.702;SB=-5.999e+01 GT:AD:DP:GQ:PL 0/1:42,30:72:54:179,0,54 chrXII 1064835 . G A 160.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;DP=88;Dels=0.00;FS=69.150;HaplotypeScore=26.7361;MLEAC=1;MLEAF=0.500;MQ=18.91;MQ0=2;MQRankSum=3.059;QD=1.82;ReadPosRankSum=-0.515;SB=-8.796e+01 GT:AD:DP:GQ:PL 0/1:45,41:88:45:190,0,45 chrXII 1064837 . C T 341 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=30.6505;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=2;QD=3.87;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:48:374,48,0 chrXII 1064855 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;DP=108;Dels=0.00;FS=63.600;HaplotypeScore=37.2453;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=4;MQRankSum=5.005;QD=0.13;ReadPosRankSum=-2.368;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,13:108:44:44,0,316 chrXII 1064889 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.010;DP=104;Dels=0.00;FS=24.273;HaplotypeScore=148.7473;MLEAC=1;MLEAF=0.500;MQ=19.77;MQ0=3;MQRankSum=-3.758;QD=0.22;ReadPosRankSum=0.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,34:104:53:53,0,250 chrXII 1064897 . G T 322.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=100;Dels=0.01;FS=31.962;HaplotypeScore=106.8789;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=2;MQRankSum=-1.845;QD=3.22;ReadPosRankSum=1.600;SB=-3.371e+02 GT:AD:DP:GQ:PL 1/1:19,80:99:1:351,1,0 chrXII 1064900 . G A 124.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.530;DP=99;Dels=0.00;FS=7.610;HaplotypeScore=86.6159;MLEAC=1;MLEAF=0.500;MQ=20.63;MQ0=2;MQRankSum=2.985;QD=1.25;ReadPosRankSum=2.338;SB=-2.100e+02 GT:AD:DP:GQ:PL 0/1:67,32:99:99:154,0,195 chrXII 1064906 . A G 96.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DP=89;Dels=0.00;FS=76.904;HaplotypeScore=96.8935;MLEAC=1;MLEAF=0.500;MQ=22.27;MQ0=1;MQRankSum=4.289;QD=1.08;ReadPosRankSum=0.839;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:62,27:89:99:126,0,167 chrXII 1064917 . A G 257.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;DP=69;Dels=0.00;FS=3.117;HaplotypeScore=85.5714;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=0;MQRankSum=-1.131;QD=3.73;ReadPosRankSum=-0.187;SB=-2.112e+02 GT:AD:DP:GQ:PL 0/1:9,60:69:10:287,0,10 chrXII 1064932 . A G 284.21 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.477;DP=65;Dels=0.00;FS=18.253;HaplotypeScore=37.5759;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=0;MQRankSum=-0.918;QD=4.37;ReadPosRankSum=1.583;SB=-3.092e+02 GT:AD:DP:GQ:PL 1/1:15,50:65:16:317,16,0 chrXII 1064941 . A G 346 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=27.2022;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=0;QD=5.67;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:42:379,42,0 chrXII 1064959 . G A 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=56;Dels=0.00;FS=2.496;HaplotypeScore=75.7100;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=0;MQRankSum=-1.269;QD=2.89;ReadPosRankSum=0.490;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:17,34:56:78:192,0,78 chrXII 1064970 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DP=60;Dels=0.03;FS=8.775;HaplotypeScore=74.0309;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=0;MQRankSum=1.331;QD=0.20;ReadPosRankSum=0.215;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,9:58:42:42,0,286 chrXII 1064984 . G C,T 199.47 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.432;DP=48;Dels=0.00;FS=10.606;HaplotypeScore=25.6984;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.80;MQ0=0;MQRankSum=1.751;QD=4.16;ReadPosRankSum=0.365;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/2:14,12,18:48:39:259,196,210,43,0,39 chrXII 1064985 . A G 170.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.562;DP=48;Dels=0.00;FS=2.479;HaplotypeScore=43.5953;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=1.412;QD=3.54;ReadPosRankSum=1.725;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:28,20:48:73:200,0,73 chrXII 1064988 . G A 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;DP=49;Dels=0.00;FS=9.494;HaplotypeScore=75.6590;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=0;MQRankSum=1.369;QD=0.31;ReadPosRankSum=1.588;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,4:49:45:45,0,202 chrXII 1064997 . A G 53.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=36;Dels=0.00;FS=10.299;HaplotypeScore=62.0147;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=0;MQRankSum=-0.507;QD=1.47;ReadPosRankSum=0.539;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:19,17:36:83:83,0,87 chrXII 1065006 . A G 125.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;DP=36;Dels=0.00;FS=3.017;HaplotypeScore=86.9023;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=-1.898;QD=3.47;ReadPosRankSum=1.833;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:14,22:36:41:155,0,41 chrXII 1065009 . G T 157.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;DP=31;Dels=0.00;FS=7.856;HaplotypeScore=55.0097;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=0.350;QD=5.09;ReadPosRankSum=0.996;SB=-1.135e+02 GT:AD:DP:GQ:PL 0/1:6,23:31:0:186,0,0 chrXII 1065012 . G C 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=32;Dels=0.00;FS=1.533;HaplotypeScore=56.7152;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=2.378;QD=3.13;ReadPosRankSum=2.053;SB=-9.001e+01 GT:AD:DP:GQ:PL 0/1:22,10:32:58:130,0,58 chrXII 1065154 . T G 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;DP=139;Dels=0.04;FS=0.000;HaplotypeScore=119.6446;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=2;MQRankSum=-1.269;QD=0.34;ReadPosRankSum=-2.298;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:104,29:134:77:77,0,548 chrXII 1065267 . C G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.85;MQ0=30;QD=0.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:6:53,6,0 chrXII 1065293 . C T 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=1;QD=4.76;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,4:5:6:55,6,0 chrXII 1065396 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrXII 1065403 . T G 78.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.13;MQ0=0;QD=15.70;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:12:111,12,0 chrXII 1065450 . C T 317 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=6;QD=13.21;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:350,36,0 chrXII 1065495 . T G 211.01 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.63;MQ0=6;QD=9.59;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:27:244,27,0 chrXII 1065658 . A C 1642 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=1;QD=24.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1675,186,0 chrXII 1066277 . G A 995 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6551;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=27;QD=10.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1028,108,0 chrXIII 5522 . C A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.88;MQ0=1;QD=4.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:43,6,0 chrXIII 5523 . A G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXIII 5532 . T G 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;MQRankSum=-0.736;QD=4.01;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,2:3:6:43,6,0 chrXIII 5539 . A C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=17.82;MQ0=1;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.380;SB=1.28 GT:AD:DP:GQ:PL 1/1:5,3:9:6:43,6,0 chrXIII 5541 . C A 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.054;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=11.4876;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=1;MQRankSum=1.422;QD=1.09;ReadPosRankSum=2.054;SB=1.32 GT:AD:DP:GQ:PL 1/1:7,3:11:6:43,6,0 chrXIII 8214 . A G 151.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=1;QD=18.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,7:8:21:184,21,0 chrXIII 8262 . A G 203.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=3;QD=15.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:27:236,27,0 chrXIII 8279 . G C 206.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=3;QD=14.72;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:1,13:14:27:239,27,0 chrXIII 8317 . G A 157.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=2;QD=17.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:21:190,21,0 chrXIII 8363 . A G 219 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=19.91;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:252,30,0 chrXIII 8385 . G A 232.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=17.85;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:265,27,0 chrXIII 8402 . C T 389 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;QD=16.21;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:422,45,0 chrXIII 8415 . T G 627 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=16.50;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:75:660,75,0 chrXIII 8429 . C G 546 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.55;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:63:579,63,0 chrXIII 8431 . G T 542 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=30.7455;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.42;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:63:575,63,0 chrXIII 8449 . A G 554 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=14.21;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:63:587,63,0 chrXIII 8450 . C T 533 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=13.67;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:60:566,60,0 chrXIII 8461 . A T 571 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=12.69;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:66:604,66,0 chrXIII 8537 . A G 553 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.81;MQ0=0;QD=17.84;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:66:586,66,0 chrXIII 8543 . T C 641 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=20.03;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:674,78,0 chrXIII 8656 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=24.56;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1261,135,0 chrXIII 8679 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=21.50;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1194,135,0 chrXIII 8687 . A G 1151 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=21.31;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1184,132,0 chrXIII 8859 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4930;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.02;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1003,114,0 chrXIII 8872 . C T 827 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=36.6935;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=19.69;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:860,93,0 chrXIII 8939 . A G 776 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=13.61;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:809,90,0 chrXIII 8946 . G A 649 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=5.482;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;MQRankSum=-1.013;QD=12.25;ReadPosRankSum=-0.098;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:75:682,75,0 chrXIII 8949 . A G 674 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;MQRankSum=-1.466;QD=12.72;ReadPosRankSum=1.666;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:81:707,81,0 chrXIII 8968 . A T 678 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=14.43;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:711,75,0 chrXIII 8973 . G T 645 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.73;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:678,72,0 chrXIII 9141 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.43;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:922,102,0 chrXIII 9200 . A G 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-1.347;QD=17.13;ReadPosRankSum=1.501;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:90:821,90,0 chrXIII 9278 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=23.60;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1048,114,0 chrXIII 9360 . A G 1003 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.80;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:99:1036,114,0 chrXIII 9497 . A G 697 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=15.49;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:730,81,0 chrXIII 9517 . A G 542 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=13.55;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:575,63,0 chrXIII 9525 . A C 436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=37;Dels=0.00;FS=8.644;HaplotypeScore=28.6396;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-0.504;QD=11.78;ReadPosRankSum=2.049;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:2,35:37:51:469,51,0 chrXIII 9709 . T C 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-1.732;QD=22.00;ReadPosRankSum=1.679;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1463,162,0 chrXIII 9730 . T C 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.420;QD=20.15;ReadPosRankSum=1.680;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1383,156,0 chrXIII 9746 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.56;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1165,123,0 chrXIII 9755 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=18.11;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1047,114,0 chrXIII 9829 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.54;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1049,117,0 chrXIII 9880 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.86;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1055,114,0 chrXIII 9896 . C T 990 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.80;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1023,108,0 chrXIII 9944 . T C 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=4.205;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-0.241;QD=18.52;ReadPosRankSum=1.601;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1496,168,0 chrXIII 10120 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.79;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,135,0 chrXIII 10131 . T A 1104 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=21.65;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1137,120,0 chrXIII 10239 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.89;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1658,183,0 chrXIII 10479 . T C 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.325;QD=19.18;ReadPosRankSum=1.681;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1337,153,0 chrXIII 10737 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1974,216,0 chrXIII 10868 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0895;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.39;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1869,201,0 chrXIII 10941 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=2.917;HaplotypeScore=10.7307;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.879;QD=21.81;ReadPosRankSum=2.398;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:2127,237,0 chrXIII 11305 . A G 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7435;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.519;QD=22.46;ReadPosRankSum=1.556;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1583,171,0 chrXIII 11319 . T A 1187 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.26;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1220,132,0 chrXIII 11831 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.33;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1313,147,0 chrXIII 11972 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.35;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1570,168,0 chrXIII 12086 . A T 1187 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1220,135,0 chrXIII 12215 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6604;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1495,165,0 chrXIII 12311 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.41;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1672,186,0 chrXIII 12440 . C T 2388 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.96;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2421,258,0 chrXIII 12902 . T G 2511 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.77;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2544,285,0 chrXIII 13034 . G A 3126 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.42;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3159,342,0 chrXIII 13064 . A G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.340;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.634;QD=22.34;ReadPosRankSum=1.619;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2781,309,0 chrXIII 13242 . T G 1810 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.4820;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.67;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1843,213,0 chrXIII 13364 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.4137;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.68;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2301,243,0 chrXIII 13439 . A T 1881 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.66;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1914,207,0 chrXIII 13605 . A C 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=0.370;QD=18.43;ReadPosRankSum=1.265;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1673,186,0 chrXIII 13809 . C G 971 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=10.79;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1004,111,0 chrXIII 13831 . A G 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-0.683;QD=13.33;ReadPosRankSum=1.700;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1499,168,0 chrXIII 13852 . T A 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=127;Dels=0.00;FS=8.813;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=-1.513;QD=16.50;ReadPosRankSum=2.118;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2128,228,0 chrXIII 13907 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=19.02;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2049,219,0 chrXIII 13915 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.97;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1848,207,0 chrXIII 13939 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=15.40;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1588,174,0 chrXIII 13954 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=14.23;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1513,162,0 chrXIII 13964 . A G 1309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=3.136;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=0.709;QD=12.47;ReadPosRankSum=1.699;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1342,156,0 chrXIII 13996 . A T 1454 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=12.87;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1487,159,0 chrXIII 14006 . A G 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=6.710;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=47.15;MQ0=0;MQRankSum=1.230;QD=13.55;ReadPosRankSum=2.351;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:1727,195,0 chrXIII 14063 . C T 2578 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.28;SB=-1.768e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2611,282,0 chrXIII 14341 . G C 2100 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.87;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2133,237,0 chrXIII 14478 . G C 1872 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6215;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.35;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1905,210,0 chrXIII 14562 . A G 2436 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=21.75;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2469,279,0 chrXIII 14580 . A G 2376 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=20.84;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2409,258,0 chrXIII 14592 . A T 2052 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.32;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2085,231,0 chrXIII 14664 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.51;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1991,216,0 chrXIII 14705 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.74;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2024,213,0 chrXIII 14918 . T A 3025 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.1469;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.52;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3058,330,0 chrXIII 14933 . C A 3115 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.59;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3148,339,0 chrXIII 14934 . G T 2614 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.54;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2647,288,0 chrXIII 15055 . A T 2693 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.42;SB=-1.564e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2726,294,0 chrXIII 15357 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.754;QD=19.14;ReadPosRankSum=1.691;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1698,189,0 chrXIII 15470 . C T 1815 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.692;QD=20.62;ReadPosRankSum=1.453;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1848,201,0 chrXIII 15936 . T C 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.792;QD=20.92;ReadPosRankSum=-1.138;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1518,149,0 chrXIII 16047 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.14;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1583,177,0 chrXIII 16224 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.45;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2435,276,0 chrXIII 16287 . G A 2585 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.36;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2618,282,0 chrXIII 16314 . C T 2181 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.48;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2214,240,0 chrXIII 16338 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.91;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1589,180,0 chrXIII 16368 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=15.95;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1277,147,0 chrXIII 16406 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.90;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1286,138,0 chrXIII 16418 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=15.06;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1102,123,0 chrXIII 16434 . A G 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.722;QD=12.59;ReadPosRankSum=1.684;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,71:76:99:990,114,0 chrXIII 16498 . G T 1540 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.21;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1573,168,0 chrXIII 16764 . G A 2665 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.21;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2698,288,0 chrXIII 17364 . T C 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1021;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.129;QD=17.82;ReadPosRankSum=0.358;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:2,84:90:99:1637,183,0 chrXIII 17462 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0377;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.06;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2666,288,0 chrXIII 17648 . T C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.3988;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.084;QD=20.53;ReadPosRankSum=1.665;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2189,243,0 chrXIII 17699 . A C 1871 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.12;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1904,216,0 chrXIII 17708 . T C 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.525;QD=18.87;ReadPosRankSum=1.693;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1712,195,0 chrXIII 17810 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.38;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1908,201,0 chrXIII 17913 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.24;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2072,228,0 chrXIII 17955 . T G 1543 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.78;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1576,177,0 chrXIII 18527 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.43;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1565,168,0 chrXIII 18546 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.18;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1433,156,0 chrXIII 18729 . C T 339 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.27;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:39:372,39,0 chrXIII 19498 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.1895;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.23;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1601,180,0 chrXIII 20497 . T C 1126 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.41;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1159,129,0 chrXIII 21082 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=16.09;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1545,177,0 chrXIII 21100 . G T 1546 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=16.10;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1579,180,0 chrXIII 21105 . T C 1422 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=16.16;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1455,162,0 chrXIII 21121 . T C 1301 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=16.47;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1334,150,0 chrXIII 21124 . G A 1308 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=16.77;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1341,144,0 chrXIII 21130 . C T 1317 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1350,147,0 chrXIII 21139 . A G 1176 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=15.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1209,135,0 chrXIII 21154 . G A 1231 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=15.01;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1264,135,0 chrXIII 21157 . A G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;MQRankSum=0.083;QD=14.62;ReadPosRankSum=2.917;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:3,82:85:99:1276,141,0 chrXIII 21175 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=14.01;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1112,126,0 chrXIII 21211 . G A 1091 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=16.04;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1124,120,0 chrXIII 21229 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=14.97;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1021,114,0 chrXIII 21231 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=14.86;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1014,114,0 chrXIII 21241 . A G 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-2.122;QD=13.01;ReadPosRankSum=2.906;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1009,114,0 chrXIII 21244 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.32;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1045,114,0 chrXIII 21253 . G A 785 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=10.06;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:90:818,90,0 chrXIII 21269 . A G 910 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=11.82;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:943,102,0 chrXIII 21274 . T A 796 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=10.08;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:93:829,93,0 chrXIII 21280 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=8.58;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:81:694,81,0 chrXIII 21292 . C T 705 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=8.29;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:84:738,84,0 chrXIII 21295 . G A 695 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=8.08;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:84:728,84,0 chrXIII 21298 . T C 698 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=8.84;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:81:731,81,0 chrXIII 21301 . A G 675 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=1.595;QD=8.88;ReadPosRankSum=1.687;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:81:708,81,0 chrXIII 21307 . T C 579 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=8.27;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:69:612,69,0 chrXIII 21309 . G A 679 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=9.70;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:712,78,0 chrXIII 21319 . G A 731 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.25;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:84:764,84,0 chrXIII 21328 . A G 586 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=76;Dels=0.00;FS=12.384;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.534;QD=7.71;ReadPosRankSum=2.908;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:69:619,69,0 chrXIII 21331 . G A 589 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=7.96;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:622,69,0 chrXIII 21334 . T C 578 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=2.615;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.219;QD=7.81;ReadPosRankSum=2.905;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:69:611,69,0 chrXIII 21337 . G C 566 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=7.65;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:599,69,0 chrXIII 21345 . G C 546 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.40;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:63:579,63,0 chrXIII 21370 . A G 683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.175;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;MQRankSum=-0.509;QD=10.04;ReadPosRankSum=1.681;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:81:716,81,0 chrXIII 21375 . C T 631 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=9.01;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:75:664,75,0 chrXIII 21391 . A G 462 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=7.33;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:54:495,54,0 chrXIII 21408 . G A 500 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=9.26;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:57:533,57,0 chrXIII 21409 . T C 474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=2.737;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=-0.066;QD=8.46;ReadPosRankSum=2.362;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:57:507,57,0 chrXIII 21424 . A G 558 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.73;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:591,66,0 chrXIII 21430 . A G 503 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.48;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:536,60,0 chrXIII 21436 . G A 535 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=11.15;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:568,63,0 chrXIII 21439 . G A 534 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=10.90;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:63:567,63,0 chrXIII 21454 . T A 438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=0.970;QD=8.76;ReadPosRankSum=1.663;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:54:471,54,0 chrXIII 21463 . A G 460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=8.346;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=1.564;QD=11.22;ReadPosRankSum=1.648;SB=-1.220e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:54:493,54,0 chrXIII 21478 . C A 501 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=12.52;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:57:534,57,0 chrXIII 21480 . A C 505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-0.953;QD=12.62;ReadPosRankSum=1.646;SB=-6.901e+01 GT:AD:DP:GQ:PL 1/1:1,39:40:60:538,60,0 chrXIII 21490 . A G 396 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.70;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:48:429,48,0 chrXIII 21496 . A G 408 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=11.66;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:48:441,48,0 chrXIII 21523 . A G 255 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.20;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:33:288,33,0 chrXIII 21525 . A T 251 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.04;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:33:284,33,0 chrXIII 21531 . C T 265 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=9.81;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:33:298,33,0 chrXIII 21547 . C T 392 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=10.89;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:425,48,0 chrXIII 21556 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=11.58;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:60:531,60,0 chrXIII 22318 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.82;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1699,189,0 chrXIII 22495 . G A 2165 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.86;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2198,234,0 chrXIII 22567 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.72;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1966,213,0 chrXIII 22768 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.559;QD=18.69;ReadPosRankSum=1.663;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1902,216,0 chrXIII 22888 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6446;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.26;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1742,195,0 chrXIII 22939 . A G 2674 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7710;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.92;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2707,303,0 chrXIII 22987 . T C 2819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.061;QD=21.85;ReadPosRankSum=1.705;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2852,321,0 chrXIII 23134 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.85;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2577,285,0 chrXIII 23203 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.60;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1797,201,0 chrXIII 23573 . C T 2318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=106;Dels=0.00;FS=3.736;HaplotypeScore=12.1764;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=1.332;QD=21.87;ReadPosRankSum=1.599;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,104:106:99:2351,258,0 chrXIII 23630 . A C 1978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=3.802;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.830;QD=20.60;ReadPosRankSum=1.696;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2011,225,0 chrXIII 23637 . A C 1999 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.41;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2032,228,0 chrXIII 23828 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=17.33;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1281,144,0 chrXIII 23863 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=16.33;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1388,156,0 chrXIII 23864 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=16.77;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1425,153,0 chrXIII 24034 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2602,282,0 chrXIII 24106 . C G 1466 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.65;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1499,165,0 chrXIII 24134 . A T 2024 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.74;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2057,222,0 chrXIII 24474 . G T 1846 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.72;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1879,201,0 chrXIII 24556 . T A 1663 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=16.15;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1696,189,0 chrXIII 24568 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=14.74;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1610,177,0 chrXIII 24592 . T C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=6.739;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-1.465;QD=12.06;ReadPosRankSum=2.398;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,93:97:99:1203,135,0 chrXIII 24595 . T A 1145 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=12.18;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1178,129,0 chrXIII 24637 . A G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.135;QD=15.22;ReadPosRankSum=1.613;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1372,159,0 chrXIII 24667 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.41;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1829,198,0 chrXIII 24712 . C A 1928 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.66;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1961,207,0 chrXIII 24775 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.73;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1629,174,0 chrXIII 24787 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=16.18;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1392,159,0 chrXIII 24997 . T C 2561 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.46;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2594,288,0 chrXIII 25021 . C A 1943 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.8167;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=22.33;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1976,213,0 chrXIII 25025 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=19.89;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1903,213,0 chrXIII 25114 . T A 2453 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.14;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2486,264,0 chrXIII 25168 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.45;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2682,288,0 chrXIII 25294 . A G 2743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.709;QD=19.73;ReadPosRankSum=1.229;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2776,321,0 chrXIII 25638 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.72;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2760,303,0 chrXIII 26375 . C T 1066 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1099,123,0 chrXIII 26434 . G A 929 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=14.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:962,105,0 chrXIII 26706 . T C 533 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;DP=23;Dels=0.00;FS=13.617;HaplotypeScore=2.9810;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.281;QD=23.17;ReadPosRankSum=1.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,22:23:63:566,63,0 chrXIII 26922 . A C 2091 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.98;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2124,240,0 chrXIII 28045 . A G 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.663;QD=20.62;ReadPosRankSum=1.663;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1064,123,0 chrXIII 28338 . T C 2255 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.06;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2288,255,0 chrXIII 28623 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2300,258,0 chrXIII 28695 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.24;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1895,198,0 chrXIII 28764 . A T 1682 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.27;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1715,189,0 chrXIII 29022 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1877,207,0 chrXIII 29112 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0725;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.28;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1537,165,0 chrXIII 29148 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.85;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2097,228,0 chrXIII 29607 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.51;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1789,195,0 chrXIII 29616 . T A 1204 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1062;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.72;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1237,141,0 chrXIII 29721 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.05;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1949,213,0 chrXIII 29779 . T C 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;DP=115;Dels=0.00;FS=6.291;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.209;QD=17.38;ReadPosRankSum=2.364;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2032,207,0 chrXIII 29826 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.23;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2656,282,0 chrXIII 29994 . T G 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.266;QD=21.96;ReadPosRankSum=1.674;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2646,300,0 chrXIII 30300 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.50;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1503,168,0 chrXIII 30379 . T A 1407 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1440,159,0 chrXIII 30523 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.00;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2387,264,0 chrXIII 30585 . G C 1616 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.55;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1649,183,0 chrXIII 30827 . A G 1948 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.51;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1981,225,0 chrXIII 30836 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.08;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1981,210,0 chrXIII 32108 . T C 2229 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2262,249,0 chrXIII 32346 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.80;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2475,270,0 chrXIII 32868 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.11;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1829,198,0 chrXIII 33754 . C G 1391 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.46;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1424,159,0 chrXIII 33836 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.78;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1742,189,0 chrXIII 34100 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.54;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1822,192,0 chrXIII 34473 . T G 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=4.858;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.326;QD=21.86;ReadPosRankSum=0.497;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2263,252,0 chrXIII 34777 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.40;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2407,258,0 chrXIII 34804 . C A 2136 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.80;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2169,231,0 chrXIII 35547 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.11;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1720,183,0 chrXIII 35559 . C G 1712 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.14;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1745,201,0 chrXIII 35592 . T C 1728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=2.596;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.806;QD=21.33;ReadPosRankSum=2.359;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1761,201,0 chrXIII 35651 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.93;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2234,234,0 chrXIII 35720 . T A 1582 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.77;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1615,177,0 chrXIII 35874 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.0898;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.12;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2400,258,0 chrXIII 36081 . A G 2143 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.08;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2176,252,0 chrXIII 36261 . G A 2956 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.4096;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.46;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2989,339,0 chrXIII 36440 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=3.033;HaplotypeScore=7.9465;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.326;QD=20.90;ReadPosRankSum=2.402;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2186,243,0 chrXIII 36544 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.78;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1279,144,0 chrXIII 36940 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.08;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1218,141,0 chrXIII 37053 . T C 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.635;QD=23.67;ReadPosRankSum=1.617;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1453,168,0 chrXIII 37516 . G C 1880 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.93;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1913,210,0 chrXIII 37845 . A T 2431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=3.399;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.610;QD=23.15;ReadPosRankSum=1.699;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2464,273,0 chrXIII 37897 . A T 1647 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.67;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1680,189,0 chrXIII 37977 . T G 1157 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0685;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.77;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1190,138,0 chrXIII 38045 . G T 2780 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.36;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2813,300,0 chrXIII 38088 . C T 2581 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.46;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2614,279,0 chrXIII 38121 . A C 2458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.569;DP=107;Dels=0.00;FS=3.263;HaplotypeScore=6.0132;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.699;QD=22.97;ReadPosRankSum=1.667;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2491,288,0 chrXIII 38305 . T C 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.171;QD=21.20;ReadPosRankSum=1.683;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1538,171,0 chrXIII 38612 . A G 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.676;QD=18.61;ReadPosRankSum=1.690;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1559,177,0 chrXIII 38654 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.35;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1754,186,0 chrXIII 39248 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1634,183,0 chrXIII 40048 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.08;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:997,105,0 chrXIII 40087 . T G 729 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.09;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:84:762,84,0 chrXIII 41051 . G T 2421 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.74;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2454,261,0 chrXIII 41198 . T A 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.474;QD=21.01;ReadPosRankSum=1.695;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2008,222,0 chrXIII 42028 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.89;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1979,234,0 chrXIII 42127 . A G 1618 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.47;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1651,186,0 chrXIII 42627 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.8643;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.11;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1827,201,0 chrXIII 42635 . A G 1504 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.53;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1537,171,0 chrXIII 42940 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.3695;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.49;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1457,156,0 chrXIII 43168 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.577;QD=18.80;ReadPosRankSum=1.647;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1556,168,0 chrXIII 43624 . T G 889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=8.152;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.916;QD=15.07;ReadPosRankSum=2.280;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:922,105,0 chrXIII 43994 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.69;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1254,138,0 chrXIII 44841 . C A 1498 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0571;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=13.03;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1531,165,0 chrXIII 45053 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.91;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1659,192,0 chrXIII 45254 . A G 3218.91 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0658;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.355;QD=20.50;ReadPosRankSum=1.710;SB=-1.707e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3252,363,0 chrXIII 45369 . A G 3536.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=154;Dels=0.00;FS=5.343;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.315;QD=22.96;ReadPosRankSum=1.710;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3536,393,0 chrXIII 45656 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.72;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1729,183,0 chrXIII 45743 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.17;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1458,156,0 chrXIII 45908 . T C 1407 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.866;QD=17.59;ReadPosRankSum=0.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1440,159,0 chrXIII 45947 . A G 785 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.290;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.664;QD=14.27;ReadPosRankSum=3.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,51:55:93:818,93,0 chrXIII 46009 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.55;MQ0=0;QD=23.41;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1695,180,0 chrXIII 46032 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=24.38;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2081,234,0 chrXIII 46074 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.87;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1818,189,0 chrXIII 46256 . C G 847 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.89;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:880,99,0 chrXIII 46350 . C A 1949 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.40;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1982,216,0 chrXIII 46508 . T C 1086 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1119,123,0 chrXIII 46758 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.38;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1444,156,0 chrXIII 46836 . G A 2490 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.61;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2523,282,0 chrXIII 47087 . A G 3052 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:3085,342,0 chrXIII 47331 . C T 3979.01 PASS AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.4907;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=21.16;SB=-2.023e+03 GT:AD:DP:GQ:PL 1/1:0,188:188:99:3979,429,0 chrXIII 47403 . A T 3150 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.45;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3183,342,0 chrXIII 47781 . A C 2117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.588;QD=22.05;ReadPosRankSum=1.660;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2150,234,0 chrXIII 47811 . A G 2043 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.45;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2076,234,0 chrXIII 48234 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.691;QD=19.88;ReadPosRankSum=1.610;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1723,195,0 chrXIII 48318 . T C 1046 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.85;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1079,120,0 chrXIII 48322 . T C 1057 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.33;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1090,120,0 chrXIII 48342 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.15;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1034,108,0 chrXIII 48378 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=14.47;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1017,111,0 chrXIII 48393 . G C 858 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.05;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:891,99,0 chrXIII 48814 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.51;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1420,156,0 chrXIII 49044 . A G 2417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.7343;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.160;QD=20.14;ReadPosRankSum=1.441;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2450,279,0 chrXIII 49380 . G A 2791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.172;QD=24.92;ReadPosRankSum=-1.420;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2824,303,0 chrXIII 49588 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.98;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1153,120,0 chrXIII 50514 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.728;QD=20.65;ReadPosRankSum=1.632;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1458,165,0 chrXIII 50532 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.83;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1725,186,0 chrXIII 50831 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.15;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1948,210,0 chrXIII 51084 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.9859;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.98;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1891,210,0 chrXIII 51141 . A T 2220 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.5163;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.97;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2253,243,0 chrXIII 51348 . A C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.563;QD=17.80;ReadPosRankSum=1.711;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1813,204,0 chrXIII 51358 . G T 1585 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=17.04;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1618,177,0 chrXIII 51362 . A G 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=6.724;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.470;QD=15.11;ReadPosRankSum=2.399;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1499,171,0 chrXIII 51409 . T C 787 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=11.08;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:93:820,93,0 chrXIII 51433 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=15.65;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1254,138,0 chrXIII 51596 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=2.744;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.431;QD=20.03;ReadPosRankSum=2.354;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2597,300,0 chrXIII 51658 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.295;QD=21.85;ReadPosRankSum=1.698;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2284,258,0 chrXIII 51750 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=65;Dels=0.00;FS=10.318;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.141;QD=20.71;ReadPosRankSum=2.892;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:3,62:65:99:1379,159,0 chrXIII 51822 . A T 1610 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.00;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1643,177,0 chrXIII 51951 . T A 2545 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.14;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2578,285,0 chrXIII 52482 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.78;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2268,246,0 chrXIII 52494 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.94;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2098,234,0 chrXIII 52575 . A G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=8.240;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.722;QD=19.69;ReadPosRankSum=2.393;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1746,192,0 chrXIII 52599 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.564;QD=20.08;ReadPosRankSum=1.692;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1760,198,0 chrXIII 53217 . T C 2005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=9.915;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.732;QD=20.89;ReadPosRankSum=2.373;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:2038,228,0 chrXIII 53276 . C G 2003 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.08;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2036,228,0 chrXIII 53460 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.19;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1261,141,0 chrXIII 53537 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=16.96;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:932,102,0 chrXIII 53556 . A G 696 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.5438;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=13.92;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:84:729,84,0 chrXIII 53642 . A G 1531 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.87;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1564,174,0 chrXIII 53691 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.40;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1574,177,0 chrXIII 53825 . C A 550 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=9.32;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:63:583,63,0 chrXIII 53841 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8218;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=9.95;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:75:640,75,0 chrXIII 54136 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.24;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1647,183,0 chrXIII 54499 . C T 941 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:974,102,0 chrXIII 54576 . G C 1461 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1494,165,0 chrXIII 54586 . G A 1452 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1485,159,0 chrXIII 55092 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.87;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1520,174,0 chrXIII 55152 . A G 2256 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.79;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2289,252,0 chrXIII 55367 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1363,153,0 chrXIII 55550 . A G 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.166;QD=21.51;ReadPosRankSum=1.685;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1603,177,0 chrXIII 55773 . G C 1652 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.32;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1685,189,0 chrXIII 55803 . G T 1546 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.78;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1579,168,0 chrXIII 56231 . A G 1083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=2.822;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.365;QD=16.41;ReadPosRankSum=2.375;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1116,123,0 chrXIII 56276 . C G 997 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=16.34;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1030,114,0 chrXIII 56441 . A G 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=18.34;ReadPosRankSum=1.676;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1170,129,0 chrXIII 56748 . T A 1223 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.08;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1256,132,0 chrXIII 58478 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.36;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1763,189,0 chrXIII 58688 . T G 1692 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.44;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1725,192,0 chrXIII 59269 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1540,171,0 chrXIII 60022 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6629;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.58;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2223,237,0 chrXIII 60420 . G C 1586 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.66;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1619,177,0 chrXIII 60529 . T C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.071;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.6653;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.637;QD=20.35;ReadPosRankSum=1.305;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,72:77:99:1600,177,0 chrXIII 60610 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1503,165,0 chrXIII 60754 . T G 1479 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.13;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1512,171,0 chrXIII 61147 . A G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.264;QD=17.63;ReadPosRankSum=1.592;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1355,159,0 chrXIII 61164 . A C 1523 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=19.53;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1556,174,0 chrXIII 61233 . T A 1597 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.36;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1630,174,0 chrXIII 61663 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.18;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1587,174,0 chrXIII 61741 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.54;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1566,177,0 chrXIII 62006 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.28;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1395,150,0 chrXIII 62010 . G C 1207 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.79;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1240,138,0 chrXIII 62507 . A G 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.994;QD=19.95;ReadPosRankSum=1.675;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1250,138,0 chrXIII 62513 . A C 1175 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.36;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1208,135,0 chrXIII 62572 . G A 1519 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.39;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1552,168,0 chrXIII 62594 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.96;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1592,174,0 chrXIII 62630 . G T 1860 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.14;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1893,213,0 chrXIII 63092 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.87;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1170,132,0 chrXIII 63134 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.834;QD=21.39;ReadPosRankSum=1.668;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1188,132,0 chrXIII 63281 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.9511;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.90;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1696,180,0 chrXIII 63358 . C A 1715 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.18;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1748,186,0 chrXIII 64188 . G C 1354 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1387,153,0 chrXIII 64223 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1220,132,0 chrXIII 64394 . T A 735 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.00;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:768,81,0 chrXIII 64550 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.68;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:987,105,0 chrXIII 64643 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.80;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1220,129,0 chrXIII 64972 . C A 1266 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6141;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.10;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1299,138,0 chrXIII 65033 . A T 1441 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1474,159,0 chrXIII 65232 . A G 1631 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.46;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1664,186,0 chrXIII 65285 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.28;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1830,192,0 chrXIII 65314 . C A 1919 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.40;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1952,207,0 chrXIII 65366 . G A 2279 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.1765;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.91;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,100:104:99:2312,246,0 chrXIII 65426 . A T 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=13.984;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.375;QD=23.05;ReadPosRankSum=2.387;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1831,195,0 chrXIII 65498 . T C 1277 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.02;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1310,147,0 chrXIII 65513 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.52;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1326,144,0 chrXIII 65534 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.11;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1319,147,0 chrXIII 65552 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.08;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1426,156,0 chrXIII 66018 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.45;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1435,159,0 chrXIII 66032 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.28;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1421,156,0 chrXIII 66092 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5203;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.37;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1284,141,0 chrXIII 66227 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.99;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1592,171,0 chrXIII 66284 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=20.28;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1250,132,0 chrXIII 66329 . T G 1252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=-0.147;QD=21.22;ReadPosRankSum=1.615;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1285,141,0 chrXIII 66524 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1665,192,0 chrXIII 66659 . G A 1622 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.63;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1655,180,0 chrXIII 67133 . C T 2168 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.58;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2201,234,0 chrXIII 67286 . G A 3127 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.51;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3160,336,0 chrXIII 67415 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.15;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2447,273,0 chrXIII 67589 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.9703;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.73;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2231,237,0 chrXIII 67688 . A T 2151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=104;Dels=0.00;FS=2.699;HaplotypeScore=55.2846;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=-0.698;QD=20.68;ReadPosRankSum=2.213;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2184,231,0 chrXIII 67699 . C T 372 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=63.9498;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=4.48;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:48:405,48,0 chrXIII 68026 . G C 1359 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=20.28;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1392,162,0 chrXIII 68032 . G C 1234 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.88;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1267,141,0 chrXIII 68049 . T A 1142 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=20.04;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1175,126,0 chrXIII 68077 . A G 1191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-0.420;QD=18.05;ReadPosRankSum=1.627;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1224,135,0 chrXIII 68110 . A T 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;DP=62;Dels=0.00;FS=3.610;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=0.056;QD=17.31;ReadPosRankSum=1.397;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1106,117,0 chrXIII 68113 . A G 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=3.610;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.056;QD=15.78;ReadPosRankSum=1.453;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1043,117,0 chrXIII 68270 . A G 1913 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1946,216,0 chrXIII 68665 . C T 3163 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.27;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3196,345,0 chrXIII 68826 . T C 2324 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8772;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.53;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2357,270,0 chrXIII 68960 . G A 4123.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.4344;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.851e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:4123,438,0 chrXIII 69025 . C T 3645.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.78;SB=-2.135e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3645,390,0 chrXIII 69113 . A G 3326.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.03;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3326,378,0 chrXIII 69298 . G A 3400.01 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=8.7920;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.52;SB=-1.970e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:3400,360,0 chrXIII 69499 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.17;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2467,267,0 chrXIII 69791 . T C 3051 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.1091;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.61;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:3084,339,0 chrXIII 69900 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.96;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1470,165,0 chrXIII 70163 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.622;DP=106;Dels=0.00;FS=2.590;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.291;QD=14.69;ReadPosRankSum=2.816;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,101:106:99:1590,177,0 chrXIII 70166 . C G 1590 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.22;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:98:99:1623,183,0 chrXIII 70764 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.44;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1423,156,0 chrXIII 70824 . C A 2062 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.43;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2095,228,0 chrXIII 71137 . A G 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.661;QD=18.05;ReadPosRankSum=1.669;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2037,228,0 chrXIII 71382 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=15.72;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1448,165,0 chrXIII 71397 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.19;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1474,159,0 chrXIII 71613 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.34;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1640,183,0 chrXIII 71867 . A T 1515 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1548,168,0 chrXIII 72303 . A G 1413 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.35;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1446,165,0 chrXIII 72351 . C A 1501 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.06;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1534,174,0 chrXIII 72474 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.5974;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.96;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1834,204,0 chrXIII 72510 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.91;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1808,189,0 chrXIII 72525 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.42;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1667,183,0 chrXIII 72588 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=15.27;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1270,141,0 chrXIII 72591 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=16.56;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1374,147,0 chrXIII 72609 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=13.43;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1255,135,0 chrXIII 72618 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=14.06;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1256,135,0 chrXIII 72669 . G A 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=94;Dels=0.00;FS=3.106;HaplotypeScore=6.2725;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.414;QD=14.00;ReadPosRankSum=0.602;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1349,147,0 chrXIII 72936 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.94;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2183,231,0 chrXIII 72996 . G A 2471 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.7595;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.49;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2504,270,0 chrXIII 73368 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.6659;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2258,237,0 chrXIII 73482 . C T 3637.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=26.7970;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.65;SB=-2.089e+03 GT:AD:DP:GQ:PL 1/1:0,186:195:99:3637,402,0 chrXIII 73527 . A G 3347.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.41;SB=-2.034e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3347,372,0 chrXIII 73605 . G A 1978 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.27;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2011,219,0 chrXIII 73993 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1791,192,0 chrXIII 74069 . T G 1643 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.16;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1676,186,0 chrXIII 74124 . T C 760 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.03;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:793,87,0 chrXIII 74173 . C T 556 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.37;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:589,66,0 chrXIII 74186 . G T 602 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=15.84;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:635,69,0 chrXIII 74275 . T G 1058 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1091,123,0 chrXIII 74346 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2232,237,0 chrXIII 74436 . C T 985 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.10;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1018,111,0 chrXIII 75016 . A G 2386 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2419,279,0 chrXIII 75133 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.59;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1818,198,0 chrXIII 75217 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3204;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.28;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2345,252,0 chrXIII 75304 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.46;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1895,210,0 chrXIII 75396 . T C 2078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=3.039;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.628;QD=21.42;ReadPosRankSum=2.347;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:2111,234,0 chrXIII 75886 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.01;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2309,264,0 chrXIII 75934 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.61;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2748,297,0 chrXIII 76194 . A C 2258 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.30;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2291,261,0 chrXIII 76222 . A T 2264 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0450;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.04;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2297,249,0 chrXIII 76243 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.80;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2083,240,0 chrXIII 76517 . A G 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=129;Dels=0.00;FS=3.364;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-0.487;QD=18.71;ReadPosRankSum=1.705;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2447,276,0 chrXIII 76522 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6028;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.80;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2365,264,0 chrXIII 76807 . A G 2511 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.1988;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.41;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2544,291,0 chrXIII 77294 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=15.6143;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.47;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:98:99:2137,234,0 chrXIII 77434 . G A 2451 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2484,264,0 chrXIII 77482 . C T 2711 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.35;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2744,291,0 chrXIII 77879 . T G 1773 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.48;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1806,201,0 chrXIII 77979 . T G 1460 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.17;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1493,165,0 chrXIII 77997 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.66;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1405,150,0 chrXIII 78101 . T C 417 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=14.38;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:51:450,51,0 chrXIII 78103 . A G 415 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=14.82;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:51:448,51,0 chrXIII 78125 . C T 614 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.06;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:647,69,0 chrXIII 78246 . G T 1150 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.18;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1183,129,0 chrXIII 78413 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.30;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1311,141,0 chrXIII 78446 . T A 1125 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=21.23;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1158,123,0 chrXIII 78658 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.527;DP=82;Dels=0.00;FS=8.206;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.233;QD=20.52;ReadPosRankSum=3.682;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:5,77:82:99:1716,189,0 chrXIII 78710 . A C 1637 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.99;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1670,183,0 chrXIII 78777 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.66;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2004,225,0 chrXIII 78836 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.06;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1939,210,0 chrXIII 78839 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.16;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1722,195,0 chrXIII 78923 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9608;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.78;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1573,177,0 chrXIII 79324 . G T 1785 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.04;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1818,198,0 chrXIII 79364 . C G 1647 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.84;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1680,195,0 chrXIII 79697 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5279;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.253;QD=18.17;ReadPosRankSum=1.648;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1541,174,0 chrXIII 79713 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.13;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1447,162,0 chrXIII 79761 . T G 1634 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.93;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1667,186,0 chrXIII 79783 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.42;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1433,165,0 chrXIII 79850 . A G 2004 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.24;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2037,225,0 chrXIII 79877 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.4626;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.45;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2078,234,0 chrXIII 79908 . C G 2163 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.31;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2196,243,0 chrXIII 79948 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.86;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1658,189,0 chrXIII 79953 . G C 1680 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.47;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1713,189,0 chrXIII 79968 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.05;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2129,228,0 chrXIII 80220 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6778;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.80;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2632,285,0 chrXIII 80403 . T C 1055 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4808;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.02;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1088,120,0 chrXIII 80571 . A G 2222 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.52;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2255,264,0 chrXIII 80667 . T A 1918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.680;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.253;QD=20.40;ReadPosRankSum=1.658;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1951,216,0 chrXIII 80873 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2482,276,0 chrXIII 81063 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.01;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1782,198,0 chrXIII 81811 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.93;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2126,234,0 chrXIII 81965 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.97;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1087,117,0 chrXIII 82027 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.80;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1461,168,0 chrXIII 82308 . T A 1750 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.44;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1783,192,0 chrXIII 82357 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=4.670;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.958;QD=21.00;ReadPosRankSum=1.691;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1839,204,0 chrXIII 82471 . C G 2122 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.21;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2155,246,0 chrXIII 83128 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.878;DP=91;Dels=0.00;FS=2.259;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.872;QD=22.47;ReadPosRankSum=4.006;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:6,85:91:99:2078,234,0 chrXIII 83176 . T C 1898 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.803;QD=22.60;ReadPosRankSum=1.690;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1931,216,0 chrXIII 83287 . T C 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.655;DP=108;Dels=0.00;FS=5.523;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.860;QD=21.27;ReadPosRankSum=2.935;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2330,258,0 chrXIII 83404 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.85;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2546,270,0 chrXIII 83549 . T C 2276 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.50;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2309,258,0 chrXIII 83860 . T C 2086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;DP=105;Dels=0.00;FS=5.910;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.282;QD=19.87;ReadPosRankSum=1.262;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2119,217,0 chrXIII 83964 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.99;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1818,195,0 chrXIII 84178 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.46;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2544,279,0 chrXIII 84233 . T C 2522 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.70;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2555,285,0 chrXIII 86176 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=12.99;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1215,135,0 chrXIII 86212 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=16.93;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1218,129,0 chrXIII 86410 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.89;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1554,174,0 chrXIII 86512 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.32;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1642,177,0 chrXIII 86779 . A G 530 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.67;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:563,63,0 chrXIII 87110 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.27;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1549,168,0 chrXIII 87318 . T C 800 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.2159;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.51;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:93:833,93,0 chrXIII 87360 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.16;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1260,141,0 chrXIII 87459 . T C 1076 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.64;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1109,123,0 chrXIII 87584 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1340,144,0 chrXIII 87621 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1285,135,0 chrXIII 87657 . G A 965 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.10;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:998,105,0 chrXIII 87715 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.54;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:93:830,93,0 chrXIII 87918 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.07;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1405,150,0 chrXIII 88106 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.88;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1223,138,0 chrXIII 88293 . C A 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.38;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,129,0 chrXIII 88311 . A G 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=62;Dels=0.00;FS=3.087;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.811;QD=16.39;ReadPosRankSum=2.365;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,56:62:99:1049,117,0 chrXIII 88491 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.49;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:925,102,0 chrXIII 88808 . A T 1237 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.74;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1270,135,0 chrXIII 89321 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.575;QD=20.62;ReadPosRankSum=1.575;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1394,153,0 chrXIII 89325 . A C 1241 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.39;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1274,144,0 chrXIII 89860 . C T 766 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.41;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:799,84,0 chrXIII 89876 . C T 925 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.50;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:958,102,0 chrXIII 90249 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.08;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1777,189,0 chrXIII 90297 . A G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.665;HaplotypeScore=7.8425;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.420;QD=22.61;ReadPosRankSum=1.663;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2294,255,0 chrXIII 91031 . G T 1105 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.70;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1138,123,0 chrXIII 91086 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.64;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1144,129,0 chrXIII 91149 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.85;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1427,153,0 chrXIII 91485 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.70;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1259,135,0 chrXIII 91532 . T C 1402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=5.209;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.831;QD=18.95;ReadPosRankSum=1.685;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1435,162,0 chrXIII 91587 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.89;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1683,183,0 chrXIII 91667 . A G 1061 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.40;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1094,120,0 chrXIII 92048 . G A 1189 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.82;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1222,132,0 chrXIII 92059 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7844;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.82;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1177,135,0 chrXIII 93503 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.41;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2184,237,0 chrXIII 93961 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.5151;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.669;QD=19.93;ReadPosRankSum=1.669;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2205,246,0 chrXIII 94238 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.25;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1252,138,0 chrXIII 94572 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.347;QD=25.07;ReadPosRankSum=1.655;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1161,126,0 chrXIII 94898 . G C 1531 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.90;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1564,174,0 chrXIII 95343 . A C 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.591;QD=18.43;ReadPosRankSum=1.648;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1544,177,0 chrXIII 95677 . T C 424 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=22.32;SB=-6.571e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:51:457,51,0 chrXIII 95995 . T C 2083 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.064;QD=25.40;ReadPosRankSum=1.689;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2116,237,0 chrXIII 96883 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.452;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.565;QD=20.17;ReadPosRankSum=1.676;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1304,150,0 chrXIII 97655 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.73;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:966,108,0 chrXIII 97656 . T G 937 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.30;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:970,108,0 chrXIII 98310 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.10;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1811,204,0 chrXIII 98939 . A G 1986 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.47;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2019,225,0 chrXIII 99579 . G A 787 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.30;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:820,90,0 chrXIII 99676 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.47;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1893,201,0 chrXIII 100054 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.4071;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.87;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2308,261,0 chrXIII 100208 . T G 1788 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1821,201,0 chrXIII 100551 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.25;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2404,258,0 chrXIII 100610 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.69;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2449,261,0 chrXIII 101469 . A T 1646 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.66;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1679,183,0 chrXIII 101716 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.05;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1805,204,0 chrXIII 101918 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.92;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1766,198,0 chrXIII 101969 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1115,123,0 chrXIII 102083 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9136;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.16;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1585,171,0 chrXIII 102104 . C G 1662 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.26;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1695,198,0 chrXIII 102221 . G T 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.166;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.224;QD=21.99;ReadPosRankSum=1.569;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1902,210,0 chrXIII 102269 . A G 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.457;QD=20.11;ReadPosRankSum=1.512;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1320,153,0 chrXIII 102554 . C T 2532 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.93;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2565,273,0 chrXIII 102752 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.077;QD=15.61;ReadPosRankSum=1.685;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1188,135,0 chrXIII 102794 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.19;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1202,135,0 chrXIII 103106 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.83;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1220,132,0 chrXIII 103133 . T C 1000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.668;QD=18.52;ReadPosRankSum=1.668;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1033,114,0 chrXIII 103208 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1041,117,0 chrXIII 104510 . T G 996 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.17;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1029,120,0 chrXIII 104516 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.06;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:954,108,0 chrXIII 105255 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.40;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1638,183,0 chrXIII 105326 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.74;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1879,210,0 chrXIII 105406 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2132,231,0 chrXIII 105442 . G A 2366 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2399,258,0 chrXIII 106204 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.74;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1707,189,0 chrXIII 106249 . A G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.718;QD=19.41;ReadPosRankSum=1.690;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1644,183,0 chrXIII 106327 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=14.29;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1076,120,0 chrXIII 106330 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=13.11;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:990,111,0 chrXIII 106393 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.86;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1629,171,0 chrXIII 106631 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.07;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1429,153,0 chrXIII 106723 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.20;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1248,135,0 chrXIII 106741 . A G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.933;DP=95;Dels=0.00;FS=14.184;HaplotypeScore=12.2665;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.586;QD=18.06;ReadPosRankSum=3.824;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:6,87:95:99:1749,195,0 chrXIII 107083 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.46;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1664,183,0 chrXIII 107242 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.09;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1715,189,0 chrXIII 107248 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.66;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1802,195,0 chrXIII 107341 . T C 1938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2195;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.019;QD=21.07;ReadPosRankSum=1.694;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1971,216,0 chrXIII 107365 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.75;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2046,228,0 chrXIII 107957 . C T 2589 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.76;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2622,285,0 chrXIII 108307 . G A 2710 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.20;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2743,294,0 chrXIII 108789 . A G 1764 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1797,201,0 chrXIII 108901 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.97;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2318,252,0 chrXIII 109249 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.75;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:2147,234,0 chrXIII 109717 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.25;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:85:99:1839,207,0 chrXIII 109860 . C A 2615 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.81;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2648,282,0 chrXIII 110039 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.66;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1766,195,0 chrXIII 110068 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=17.02;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2110,231,0 chrXIII 110077 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=14.24;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1799,201,0 chrXIII 110109 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.19;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2416,261,0 chrXIII 110245 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.76;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1744,183,0 chrXIII 110807 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1256,138,0 chrXIII 111860 . G C 2489 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.05;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2522,282,0 chrXIII 111909 . T C 3298.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.133;DP=143;Dels=0.00;FS=4.721;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.750;QD=23.06;ReadPosRankSum=4.133;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:6,137:143:99:3298,372,0 chrXIII 112047 . G C 2810 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.81;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2843,312,0 chrXIII 112481 . C T 2613 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.19;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2646,288,0 chrXIII 112670 . T C 2696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.1613;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.490;QD=21.92;ReadPosRankSum=2.170;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2729,303,0 chrXIII 113135 . G C 1861 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.25;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1894,210,0 chrXIII 113641 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2234,249,0 chrXIII 114304 . T C 2433 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.95;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2466,276,0 chrXIII 114553 . C T 3361.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.11;SB=-1.758e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3361,363,0 chrXIII 114933 . T C 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=4.771;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.466;QD=17.28;ReadPosRankSum=1.583;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,92:96:99:1692,189,0 chrXIII 114963 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.63;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1598,168,0 chrXIII 114970 . T C 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=85;Dels=0.00;FS=8.258;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.195;QD=15.51;ReadPosRankSum=2.390;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:2,80:85:99:1351,156,0 chrXIII 115959 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.08;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1800,198,0 chrXIII 116112 . A G 3120 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.67;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3153,363,0 chrXIII 116316 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.08;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1445,156,0 chrXIII 116709 . A C 1552 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.69;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1585,180,0 chrXIII 116958 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.01;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1860,204,0 chrXIII 117057 . T C 2106 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.32;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2139,240,0 chrXIII 117105 . T G 2131 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.73;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2164,237,0 chrXIII 117111 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.49;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2138,228,0 chrXIII 117174 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.71;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2226,237,0 chrXIII 117651 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.32;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1943,222,0 chrXIII 118891 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.29;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1105,120,0 chrXIII 119087 . A C 792 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:825,93,0 chrXIII 119447 . T C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=2.792;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.411;QD=20.85;ReadPosRankSum=2.384;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1597,180,0 chrXIII 119630 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=19.44;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2035,219,0 chrXIII 119850 . T C 753 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=15.37;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:786,87,0 chrXIII 120749 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.93;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1687,183,0 chrXIII 121058 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=13.66;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1467,159,0 chrXIII 121090 . C T 1918 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.3922;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.80;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1951,207,0 chrXIII 121496 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1925,213,0 chrXIII 121594 . C T 1326 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.74;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1359,144,0 chrXIII 121637 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=16.53;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1008,108,0 chrXIII 121671 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.71;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1436,156,0 chrXIII 121693 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=14.98;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1306,144,0 chrXIII 121696 . C G 1319 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.09;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1352,150,0 chrXIII 121780 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.92;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1787,201,0 chrXIII 121817 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.61;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1599,180,0 chrXIII 121847 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.46;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1584,183,0 chrXIII 121951 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.76;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1365,156,0 chrXIII 121965 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.93;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1339,150,0 chrXIII 122094 . G T 1452 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.93;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1485,156,0 chrXIII 122176 . A G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=82;Dels=0.00;FS=6.978;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.646;QD=19.65;ReadPosRankSum=2.330;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1644,183,0 chrXIII 122193 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=18.35;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1556,177,0 chrXIII 122298 . G T 1670 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.20;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1703,183,0 chrXIII 122317 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.49;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1918,204,0 chrXIII 122419 . G A 907 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=15.64;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:940,102,0 chrXIII 122464 . C G 1959 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.02;FS=0.000;HaplotypeScore=28.5349;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.20;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1992,219,0 chrXIII 122837 . G A 977 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=13.96;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1010,111,0 chrXIII 123006 . C T 351 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=13.00;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:42:384,42,0 chrXIII 123833 . G A 3209 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.4859;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.44;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3242,339,0 chrXIII 124283 . C G 1881 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.26;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1914,225,0 chrXIII 124309 . A G 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.967;QD=21.13;ReadPosRankSum=1.642;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1660,183,0 chrXIII 124455 . T C 1256 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.31;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1289,141,0 chrXIII 124777 . C T 1441 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3499;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1474,162,0 chrXIII 125244 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.627;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.373;QD=20.01;ReadPosRankSum=2.311;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1454,159,0 chrXIII 125495 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.542;QD=21.45;ReadPosRankSum=1.637;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1599,177,0 chrXIII 125682 . G C 1760 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.28;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1793,204,0 chrXIII 125767 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=3.900;HaplotypeScore=8.2859;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.385;QD=19.20;ReadPosRankSum=1.700;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2145,240,0 chrXIII 125874 . T C 1637 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1670,186,0 chrXIII 126625 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.5313;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.11;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1294,141,0 chrXIII 126663 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.96;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1563,165,0 chrXIII 127093 . T C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=3.222;HaplotypeScore=7.0791;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.701;QD=20.88;ReadPosRankSum=1.691;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1829,210,0 chrXIII 128432 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6185;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1770,198,0 chrXIII 128498 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.23;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1475,159,0 chrXIII 128877 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.92;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1683,189,0 chrXIII 129009 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.77;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2386,255,0 chrXIII 129400 . T G 2261 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.4128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2294,255,0 chrXIII 129926 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1529,171,0 chrXIII 130052 . G A 1032 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.11;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1065,123,0 chrXIII 130073 . T C 801 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.04;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:93:834,93,0 chrXIII 130218 . T C 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.666;QD=22.28;ReadPosRankSum=1.688;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1793,195,0 chrXIII 130265 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.53;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1713,186,0 chrXIII 130721 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.6540;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.55;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2478,285,0 chrXIII 130814 . G T 2553 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.00;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2586,279,0 chrXIII 131242 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2145,228,0 chrXIII 131349 . G T 1723 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.93;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1756,189,0 chrXIII 131365 . T A 1524 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.17;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1557,165,0 chrXIII 131423 . A G 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=2.906;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.216;QD=15.32;ReadPosRankSum=2.347;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1151,135,0 chrXIII 131647 . G C 2536 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.96;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2569,279,0 chrXIII 132039 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.31;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1978,210,0 chrXIII 132061 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=24.60;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2296,249,0 chrXIII 132328 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.67;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2209,255,0 chrXIII 132350 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=22.89;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2185,234,0 chrXIII 132388 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.25;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1835,198,0 chrXIII 132409 . A G 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=0.428;QD=17.12;ReadPosRankSum=1.387;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:2,93:99:99:1728,192,0 chrXIII 132424 . A T 2133 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.55;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2166,243,0 chrXIII 132483 . A G 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.268;QD=17.76;ReadPosRankSum=0.662;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2218,255,0 chrXIII 132521 . C G 1803 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.34;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1836,207,0 chrXIII 132552 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.92;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2022,216,0 chrXIII 132728 . C T 1818 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.39;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1851,198,0 chrXIII 132856 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.61;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1416,150,0 chrXIII 132871 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.18;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1558,171,0 chrXIII 132912 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.43;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1544,168,0 chrXIII 133001 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.04;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1819,201,0 chrXIII 133212 . T C 1129 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.82;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1162,129,0 chrXIII 133456 . A T 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=82;Dels=0.01;FS=14.319;HaplotypeScore=2.9119;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.911;QD=14.48;ReadPosRankSum=2.732;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1220,129,0 chrXIII 133458 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.30;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1190,126,0 chrXIII 133858 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.29;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1697,198,0 chrXIII 134293 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.51;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1384,150,0 chrXIII 134305 . T C 1143 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.57;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1176,132,0 chrXIII 134683 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.96;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1455,162,0 chrXIII 134881 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.29;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1943,213,0 chrXIII 135169 . A G 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.418;QD=19.48;ReadPosRankSum=1.673;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1202,135,0 chrXIII 135190 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.58;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1636,171,0 chrXIII 135233 . C A 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.45;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1813,195,0 chrXIII 135252 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.40;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1420,156,0 chrXIII 135343 . T C 2691 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.86;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2724,297,0 chrXIII 135387 . G A 2144 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.81;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2177,234,0 chrXIII 135527 . T C 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.512;QD=20.75;ReadPosRankSum=1.683;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1506,168,0 chrXIII 135847 . A G 1625 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9014;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.26;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1658,186,0 chrXIII 135952 . A G 1644 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.4585;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1677,192,0 chrXIII 135985 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.97;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1687,189,0 chrXIII 136079 . T G 2044 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2077,228,0 chrXIII 136204 . G A 2845 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4855;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.11;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2878,309,0 chrXIII 136477 . A G 2977 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.39;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3010,342,0 chrXIII 137116 . T C 2156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.135;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.227;QD=20.73;ReadPosRankSum=1.900;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2189,246,0 chrXIII 137475 . C T 2790 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.47;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2823,300,0 chrXIII 137524 . T C 2922 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.76;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2955,333,0 chrXIII 137694 . G A 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.589;QD=19.36;ReadPosRankSum=0.416;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1969,210,0 chrXIII 137717 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=17.24;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1929,207,0 chrXIII 137720 . G C 1838 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=15.84;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:1871,204,0 chrXIII 137768 . C A 1915 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.9910;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=14.51;SB=-1.491e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:1948,213,0 chrXIII 137864 . C G 1821 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.77;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1854,207,0 chrXIII 137879 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3682;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.34;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2064,222,0 chrXIII 138042 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9650;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.15;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2008,222,0 chrXIII 138053 . C G 1723 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0552;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.14;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1756,204,0 chrXIII 138142 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.80;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1744,189,0 chrXIII 138155 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.215;QD=18.05;ReadPosRankSum=1.692;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1621,180,0 chrXIII 138467 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.78;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1648,186,0 chrXIII 138473 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.78;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1517,159,0 chrXIII 138521 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.95;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1981,210,0 chrXIII 138629 . T C 2415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=3.795;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-1.650;QD=18.87;ReadPosRankSum=1.623;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2448,282,0 chrXIII 138653 . A T 2535 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.64;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2568,285,0 chrXIII 138665 . A G 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.145;QD=17.43;ReadPosRankSum=2.372;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,125:129:99:2282,252,0 chrXIII 139225 . A G 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.704;QD=21.32;ReadPosRankSum=2.385;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1653,180,0 chrXIII 139387 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3857;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.13;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2040,222,0 chrXIII 139522 . A G 2167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=97;Dels=0.00;FS=3.343;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.003;QD=22.34;ReadPosRankSum=1.586;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2200,243,0 chrXIII 140328 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2075,219,0 chrXIII 140935 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.15;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1403,162,0 chrXIII 140970 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.24;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1419,156,0 chrXIII 141543 . T A 1957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.02;FS=8.904;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.635;QD=19.00;ReadPosRankSum=1.698;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1990,216,0 chrXIII 141548 . A G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.139;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.2424;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-1.147;QD=17.73;ReadPosRankSum=3.289;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:4,101:105:99:1895,216,0 chrXIII 141610 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=102.4499;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.19;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2428,264,0 chrXIII 141627 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.44;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2348,252,0 chrXIII 141894 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9113;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.22;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1788,198,0 chrXIII 142166 . T C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.01;FS=5.415;HaplotypeScore=6.8965;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.542;QD=18.64;ReadPosRankSum=2.376;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1412,134,0 chrXIII 142186 . A G 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=2.885;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.506;QD=19.29;ReadPosRankSum=2.313;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1769,201,0 chrXIII 142190 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.86;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1860,207,0 chrXIII 142395 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.73;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1651,180,0 chrXIII 142824 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.47;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1665,180,0 chrXIII 142984 . G A 1377 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=61.68;MQ0=0;QD=18.36;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1410,156,0 chrXIII 144245 . A G 3131 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.7243;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.01;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3164,357,0 chrXIII 144507 . C T 3372.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=15.7590;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.69;SB=-1.861e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3372,369,0 chrXIII 145063 . T C 1938 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.19;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1971,219,0 chrXIII 145373 . A G 1679 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3161;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.99;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1712,198,0 chrXIII 146064 . T A 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.650;QD=18.59;ReadPosRankSum=1.678;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1223,132,0 chrXIII 146065 . T G 1136 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.082;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.678;QD=17.75;ReadPosRankSum=0.487;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1169,132,0 chrXIII 146198 . T C 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.969;QD=24.00;ReadPosRankSum=1.674;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1449,159,0 chrXIII 146240 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.74;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1125,123,0 chrXIII 146979 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.7728;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.49;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1319,147,0 chrXIII 147350 . T C 349 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=12.03;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,28:29:42:382,42,0 chrXIII 147354 . G A 375 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.50;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:45:408,45,0 chrXIII 147927 . T C 2615 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.43;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2648,291,0 chrXIII 148721 . C T 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.224;QD=19.34;ReadPosRankSum=1.397;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1232,132,0 chrXIII 149089 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8488;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.00;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1903,213,0 chrXIII 149567 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.25;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1414,159,0 chrXIII 149583 . A G 1197 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=15.35;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1230,141,0 chrXIII 150108 . C T 1622 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.22;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1655,177,0 chrXIII 150273 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.93;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1917,213,0 chrXIII 150312 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.35;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2022,216,0 chrXIII 150345 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1719,192,0 chrXIII 150402 . G C 1693 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.51;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1726,189,0 chrXIII 150480 . A T 1438 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=17.54;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1471,162,0 chrXIII 150486 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.95;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1511,168,0 chrXIII 150534 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.99;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1392,153,0 chrXIII 150893 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.13;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1047,117,0 chrXIII 150900 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.43;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1116,120,0 chrXIII 150999 . A T 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-1.427;QD=17.17;ReadPosRankSum=1.681;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1218,132,0 chrXIII 151003 . T C 1103 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.71;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1136,126,0 chrXIII 151059 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.23;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:908,96,0 chrXIII 151065 . T C 803 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=17.84;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:836,93,0 chrXIII 151131 . T C 619 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.87;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:652,72,0 chrXIII 151149 . A G 561 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=14.38;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:66:594,66,0 chrXIII 151185 . G A 903 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.81;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:99:936,102,0 chrXIII 151675 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2012,213,0 chrXIII 152431 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.130;QD=12.97;ReadPosRankSum=1.632;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:941,102,0 chrXIII 152476 . T G 1623 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.2364;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.54;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1656,183,0 chrXIII 152766 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.127;QD=20.71;ReadPosRankSum=1.690;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1752,198,0 chrXIII 152885 . A G 2072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=98;Dels=0.00;FS=2.988;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.245;QD=21.14;ReadPosRankSum=2.347;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:2,94:98:99:2105,240,0 chrXIII 153486 . A T 1928 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1961,213,0 chrXIII 154077 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.18;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1345,150,0 chrXIII 154359 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.79;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2112,246,0 chrXIII 154578 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.16;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:2027,222,0 chrXIII 154896 . G C 1275 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.90;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1308,144,0 chrXIII 155139 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.80;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1696,186,0 chrXIII 155379 . T C 1591 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.72;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1624,180,0 chrXIII 155382 . T C 1565 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=17.78;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1598,177,0 chrXIII 155457 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.03;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1746,186,0 chrXIII 155649 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.39;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1507,162,0 chrXIII 155650 . G C 1427 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.78;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1460,162,0 chrXIII 155934 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2276,255,0 chrXIII 156147 . G A 2709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;DP=122;Dels=0.00;FS=4.735;HaplotypeScore=11.1301;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.645;QD=22.20;ReadPosRankSum=-0.189;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2742,291,0 chrXIII 156687 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.17;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1768,192,0 chrXIII 157245 . G A 3097 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.96;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3130,339,0 chrXIII 157287 . A C 2170 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6738;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.71;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2203,246,0 chrXIII 157392 . T A 2033 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.13;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2066,225,0 chrXIII 158463 . A C 154.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.41;SB=-1.058e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:187,21,0 chrXIII 158483 . T C 205.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.290;QD=15.77;ReadPosRankSum=1.159;SB=-7.999e+01 GT:AD:DP:GQ:PL 1/1:1,11:13:27:238,27,0 chrXIII 158538 . T C 283 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.69;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:36:316,36,0 chrXIII 158997 . A G 682 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=14.51;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:715,81,0 chrXIII 159018 . T A 741 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.44;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:774,81,0 chrXIII 159039 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=14.06;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:708,75,0 chrXIII 159055 . G A 541 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=13.20;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:574,63,0 chrXIII 159377 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.45;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1406,159,0 chrXIII 159423 . G C 1822 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.36;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1855,201,0 chrXIII 159727 . T C 661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395;DP=42;Dels=0.00;FS=9.138;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.887;QD=15.74;ReadPosRankSum=1.479;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:1,40:42:75:694,75,0 chrXIII 159728 . T C 656 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=15.62;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:75:689,75,0 chrXIII 159757 . T G 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=11.461;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.619;QD=17.18;ReadPosRankSum=1.423;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,55:56:99:995,108,0 chrXIII 161385 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.63;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2567,276,0 chrXIII 161620 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.49;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1240,141,0 chrXIII 161685 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.52;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1557,165,0 chrXIII 162309 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.32;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2080,225,0 chrXIII 162461 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=103;Dels=0.00;FS=3.872;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.277;QD=20.10;ReadPosRankSum=1.697;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2103,237,0 chrXIII 162554 . G A 2941 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.11;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2974,318,0 chrXIII 162866 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=18.02;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1853,207,0 chrXIII 163283 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.13;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1236,135,0 chrXIII 163603 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.56;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1432,159,0 chrXIII 163898 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.66;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1783,198,0 chrXIII 164304 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.58;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1424,153,0 chrXIII 164309 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.08;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1358,150,0 chrXIII 164532 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.49;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1043,117,0 chrXIII 164574 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.53;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1505,162,0 chrXIII 164604 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.53;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1333,141,0 chrXIII 164648 . T C 926 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.05;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:959,108,0 chrXIII 165032 . G T 1369 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=24.02;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1402,150,0 chrXIII 165197 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.84;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:975,108,0 chrXIII 165242 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.45;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:947,111,0 chrXIII 165260 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.35;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1106,117,0 chrXIII 165263 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.25;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1053,114,0 chrXIII 166256 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.27;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2060,219,0 chrXIII 166364 . A G 1862 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.40;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1895,222,0 chrXIII 166589 . A C 2029 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.89;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2062,237,0 chrXIII 166619 . G A 2362 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8302;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.28;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2395,261,0 chrXIII 167027 . A T 1470 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.09;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1503,165,0 chrXIII 167959 . T C 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=4.175;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.509;QD=18.77;ReadPosRankSum=1.681;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:99:1347,150,0 chrXIII 167962 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.44;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1379,153,0 chrXIII 168034 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6052;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.83;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1441,156,0 chrXIII 168044 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3361;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=19.64;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1408,150,0 chrXIII 168084 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=19.25;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1361,147,0 chrXIII 168119 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.77;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1366,147,0 chrXIII 168139 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.70;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1211,132,0 chrXIII 168170 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=19.56;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1265,138,0 chrXIII 168197 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.91;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1035,114,0 chrXIII 168229 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.18;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1275,141,0 chrXIII 168709 . T C 342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=36;Dels=0.00;FS=3.047;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;MQRankSum=-1.244;QD=9.50;ReadPosRankSum=1.244;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:2,33:36:42:375,42,0 chrXIII 168744 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=16.31;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:767,87,0 chrXIII 168773 . T C 891 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=18.96;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:924,102,0 chrXIII 168783 . T A 732 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=17.43;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:765,81,0 chrXIII 168894 . C T 358 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=12.34;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:391,42,0 chrXIII 168900 . T G 366 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=12.20;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,27:30:45:399,45,0 chrXIII 169412 . T G 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=127;Dels=0.00;FS=17.861;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=-2.865;QD=20.43;ReadPosRankSum=2.945;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:3,124:127:99:2628,288,0 chrXIII 169960 . A T 1195 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.97;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1228,132,0 chrXIII 169962 . T C 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.210;QD=17.65;ReadPosRankSum=1.680;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1198,138,0 chrXIII 170004 . T A 1352 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.78;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1385,147,0 chrXIII 170099 . T A 1445 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1478,156,0 chrXIII 170851 . C G 1396 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.3026;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=16.42;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:85:99:1429,159,0 chrXIII 170932 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.80;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1350,153,0 chrXIII 171458 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=24.83;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1821,198,0 chrXIII 171523 . A G 2452 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.58;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2485,279,0 chrXIII 171785 . T C 2513 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.94;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2546,276,0 chrXIII 171887 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=20.01;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2674,282,0 chrXIII 171896 . A C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=4.445;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=-0.271;QD=17.99;ReadPosRankSum=0.433;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2354,273,0 chrXIII 172523 . C A 1059 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.53;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1092,117,0 chrXIII 172685 . T C 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.275;QD=21.26;ReadPosRankSum=1.694;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1968,222,0 chrXIII 172925 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.76;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1436,156,0 chrXIII 172936 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.45;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1511,162,0 chrXIII 173057 . T C 2573 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.99;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2606,291,0 chrXIII 173124 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.93;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2051,225,0 chrXIII 173282 . T C 2008 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.07;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2041,225,0 chrXIII 173678 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.88;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1827,198,0 chrXIII 173801 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.33;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1924,207,0 chrXIII 173888 . T C 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=72;Dels=0.00;FS=3.016;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.511;QD=20.67;ReadPosRankSum=2.380;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:2,68:72:99:1521,171,0 chrXIII 174020 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1218,132,0 chrXIII 174059 . C G 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.61;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1327,147,0 chrXIII 174577 . A G 2596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.191;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.127;QD=20.44;ReadPosRankSum=1.705;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2629,303,0 chrXIII 174980 . T A 1989 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.31;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2022,216,0 chrXIII 174982 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.71;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2024,216,0 chrXIII 175074 . G C 1684 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.1958;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.79;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1717,189,0 chrXIII 175545 . T C 2810 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=20.36;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2843,318,0 chrXIII 175777 . A G 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.697;QD=22.85;ReadPosRankSum=1.628;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2318,255,0 chrXIII 176006 . C T 2519 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.17;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2552,276,0 chrXIII 176077 . T A 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.707;QD=21.15;ReadPosRankSum=1.626;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2106,231,0 chrXIII 176141 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.6953;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.26;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2478,264,0 chrXIII 176254 . A G 2459 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.21;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2492,282,0 chrXIII 176260 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.22;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2609,285,0 chrXIII 176569 . T C 1902 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.41;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1935,228,0 chrXIII 176730 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=5.985;HaplotypeScore=6.6081;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.803;QD=19.50;ReadPosRankSum=1.704;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2432,270,0 chrXIII 176890 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.74;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1257,138,0 chrXIII 176942 . A G 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.466;QD=20.25;ReadPosRankSum=1.666;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1086,123,0 chrXIII 177237 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.93;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1566,171,0 chrXIII 177239 . G A 1464 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.85;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1497,165,0 chrXIII 177484 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7928;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.36;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2105,225,0 chrXIII 177778 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=20.35;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2455,261,0 chrXIII 177801 . G A 2019 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=19.79;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2052,216,0 chrXIII 177805 . A T 1744 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.96;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1777,195,0 chrXIII 177891 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2609,279,0 chrXIII 178033 . C T 2384 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.49;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2417,258,0 chrXIII 178126 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=16.11;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1950,216,0 chrXIII 178128 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=15.82;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1979,222,0 chrXIII 178235 . C T 2120 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.2213;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.93;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2153,234,0 chrXIII 178695 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.69;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2007,213,0 chrXIII 178941 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.19;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2343,270,0 chrXIII 178996 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0785;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.11;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2144,225,0 chrXIII 179112 . T A 1656 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.96;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1689,183,0 chrXIII 179205 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.25;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1835,198,0 chrXIII 179439 . C T 2134 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=24.81;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2167,231,0 chrXIII 179588 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.98;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1376,153,0 chrXIII 179677 . T A 656 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.88;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:689,75,0 chrXIII 179678 . T C 631 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.12;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:664,75,0 chrXIII 179713 . G C 295 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=23.8302;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=6.70;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:36:328,36,0 chrXIII 179725 . T C 175.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.395;DP=54;Dels=0.00;FS=15.620;HaplotypeScore=32.7670;MLEAC=1;MLEAF=0.500;MQ=51.61;MQ0=0;MQRankSum=-5.178;QD=3.24;ReadPosRankSum=-0.372;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:37,17:54:99:205,0,255 chrXIII 179731 . T C 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451;DP=55;Dels=0.00;FS=11.505;HaplotypeScore=4.9627;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-5.566;QD=2.60;ReadPosRankSum=-1.521;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:40,15:55:99:173,0,319 chrXIII 179743 . C T 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=53.79;MQ0=0;MQRankSum=-5.395;QD=3.29;ReadPosRankSum=-5.162;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,13:56:99:214,0,285 chrXIII 179752 . G A 337 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=8.02;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:39:370,39,0 chrXIII 180009 . G A 2312 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=26.27;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2345,249,0 chrXIII 180335 . A G 2483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=113;Dels=0.00;FS=2.414;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.381;QD=21.97;ReadPosRankSum=3.348;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:4,109:113:99:2516,273,0 chrXIII 180773 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.90;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1895,201,0 chrXIII 180774 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.76;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1898,201,0 chrXIII 180796 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.05;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1910,204,0 chrXIII 181067 . T C 841 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.11;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:874,102,0 chrXIII 181117 . A G 1033 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.13;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1066,120,0 chrXIII 181329 . T G 1410 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1443,159,0 chrXIII 181568 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.31;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2079,234,0 chrXIII 183006 . T C 1131 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.94;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1164,132,0 chrXIII 183093 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.69;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1313,141,0 chrXIII 183416 . C T 53.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.79;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:86,9,0 chrXIII 183601 . A G 80.51 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:5:12:113,12,0 chrXIII 183769 . A T 143.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=15.90;SB=-2.811e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:176,18,0 chrXIII 183799 . T C 149.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=13.55;SB=-5.304e+01 GT:AD:DP:GQ:PL 1/1:0,10:11:21:182,21,0 chrXIII 183800 . A T 155.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=14.10;SB=-5.806e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:188,21,0 chrXIII 183815 . T C 182.03 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.00;SB=-8.204e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:215,24,0 chrXIII 183816 . A C 182.03 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.00;SB=-7.904e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:215,24,0 chrXIII 183824 . G T 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=8.70;SB=-7.504e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:24:207,24,0 chrXIII 183879 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;QD=22.90;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1224,135,0 chrXIII 183988 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=22.72;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1010,111,0 chrXIII 184061 . A G 549 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=22.87;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:582,66,0 chrXIII 184115 . G T 1001 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=26.34;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:99:1034,108,0 chrXIII 184139 . G T 1006 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.41;MQ0=0;QD=24.54;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1039,114,0 chrXIII 190128 . G C 1420 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=13.65;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1453,156,0 chrXIII 190148 . G A 2403 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.5565;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.04;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,136:141:99:2436,267,0 chrXIII 190256 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.49;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,216,0 chrXIII 191569 . T C 1408 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.83;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1441,162,0 chrXIII 191792 . A T 714 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:84:747,84,0 chrXIII 191860 . G T 798 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:90:831,90,0 chrXIII 192045 . C T 327 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=18.17;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:39:360,39,0 chrXIII 192047 . C T 361 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=0;QD=20.06;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:394,42,0 chrXIII 192110 . T C 330 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=22.00;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:39:363,39,0 chrXIII 192147 . C T 530 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:60:563,60,0 chrXIII 192203 . G A 706 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.61;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:739,81,0 chrXIII 192208 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.86;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:693,81,0 chrXIII 192254 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=21.07;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:876,93,0 chrXIII 192291 . G A 741 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.90;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:774,84,0 chrXIII 192332 . T C 587 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.96;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:620,69,0 chrXIII 192396 . C T 912 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=19.40;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:945,102,0 chrXIII 192414 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=18.17;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:778,87,0 chrXIII 192432 . T C 606 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=17.31;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:639,72,0 chrXIII 192436 . T C 555 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=16.82;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:588,66,0 chrXIII 192465 . C A 199.03 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.7977;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=9.05;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:232,24,0 chrXIII 192550 . C A 508 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=13.73;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:541,63,0 chrXIII 192634 . G A 403 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=12.21;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:48:436,48,0 chrXIII 193738 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.97;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1848,198,0 chrXIII 194005 . G T 2155 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.9494;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.92;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2188,240,0 chrXIII 194827 . T G 1965 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.68;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1998,222,0 chrXIII 195045 . C A 1329 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.15;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1362,144,0 chrXIII 195330 . C A 1660 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.56;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1693,186,0 chrXIII 195462 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1390;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.76;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1922,213,0 chrXIII 195789 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.7586;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=14.99;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1247,132,0 chrXIII 195860 . A T 1827 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=17.8528;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.62;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1860,204,0 chrXIII 195938 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.6473;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=18.37;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2091,228,0 chrXIII 195968 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=21.01;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1840,195,0 chrXIII 196000 . A C 1182 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=21.89;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1215,138,0 chrXIII 196031 . T A 909 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;QD=22.72;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:942,105,0 chrXIII 196033 . G A 901 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=22.52;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:934,105,0 chrXIII 196059 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=23.11;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1050,120,0 chrXIII 196123 . A G 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=53;Dels=0.00;FS=3.854;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=2;MQRankSum=-1.664;QD=21.87;ReadPosRankSum=1.664;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1192,132,0 chrXIII 201924 . G A 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.41;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:44,6,0 chrXIII 201928 . A G 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:52,6,0 chrXIII 201932 . A C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.65;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,32:32:6:52,6,0 chrXIII 201937 . C A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.53;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,41:41:6:53,6,0 chrXIII 201944 . C T 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.66;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:109,12,0 chrXIII 201946 . A G 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.64;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:108,12,0 chrXIII 201947 . C T 81.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.77;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,45:46:12:114,12,0 chrXIII 201949 . A T 80.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.75;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:113,12,0 chrXIII 201951 . C G 76.51 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.66;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:109,12,0 chrXIII 201959 . T C 77.51 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.41;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:110,12,0 chrXIII 201960 . A G 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.21;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:99,12,0 chrXIII 201961 . C T 78.51 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.43;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:111,12,0 chrXIII 201962 . A G 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.34;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,55:55:12:106,12,0 chrXIII 201974 . T G 76.51 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=4;QD=1.30;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:4,55:59:12:109,12,0 chrXIII 202190 . C G 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=55;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=4;MQRankSum=1.664;QD=1.34;ReadPosRankSum=-1.732;SB=-5.452e+01 GT:AD:DP:GQ:PL 1/1:5,50:55:12:106,12,0 chrXIII 202193 . A G 146.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=56;Dels=0.00;FS=11.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=4;MQRankSum=1.666;QD=2.61;ReadPosRankSum=-1.732;SB=-7.607e+01 GT:AD:DP:GQ:PL 1/1:4,52:56:21:179,21,0 chrXIII 202206 . T C 298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.781;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9035;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=3;MQRankSum=-0.825;QD=3.92;ReadPosRankSum=3.200;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:14,62:76:36:331,36,0 chrXIII 202207 . T A 298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.205;DP=81;Dels=0.00;FS=1.683;HaplotypeScore=9.0248;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=3;MQRankSum=-0.548;QD=3.68;ReadPosRankSum=4.008;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:17,64:81:36:331,36,0 chrXIII 203615 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.96;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1526,165,0 chrXIII 203921 . C T 2077 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.02;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2110,225,0 chrXIII 204520 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.24;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1688,186,0 chrXIII 205674 . T C 2593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=2.720;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.093;QD=21.79;ReadPosRankSum=2.346;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2626,291,0 chrXIII 205994 . A C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.117;QD=16.20;ReadPosRankSum=2.191;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1572,186,0 chrXIII 205995 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=16.86;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1584,180,0 chrXIII 206138 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.47;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1241,129,0 chrXIII 206146 . G A 1070 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.45;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1103,120,0 chrXIII 206217 . G A 836 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=14.93;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:869,93,0 chrXIII 206222 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=14.85;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:716,78,0 chrXIII 206335 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=12.83;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,41:46:69:623,69,0 chrXIII 206354 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.84;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1200,141,0 chrXIII 206393 . A G 1462 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.84;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1495,168,0 chrXIII 207364 . A G 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.15;ReadPosRankSum=1.543;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1141,126,0 chrXIII 207757 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.06;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1339,150,0 chrXIII 207880 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.86;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1243,138,0 chrXIII 207955 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,150,0 chrXIII 208048 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1212,129,0 chrXIII 208197 . G A 997 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=16.08;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1030,111,0 chrXIII 208201 . A G 1036 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=15.24;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1069,123,0 chrXIII 208399 . G A 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.049;QD=23.48;ReadPosRankSum=-1.402;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2545,255,0 chrXIII 208566 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.84;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1389,156,0 chrXIII 209014 . G A 499 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.68;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:532,57,0 chrXIII 209233 . C T 444 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=13.06;SB=-8.901e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:51:477,51,0 chrXIII 209291 . A T 915 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.94;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:948,102,0 chrXIII 209449 . C G 3129 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5236;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.45;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3162,351,0 chrXIII 209917 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.9689;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=2.035;QD=20.04;ReadPosRankSum=1.905;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1957,219,0 chrXIII 209977 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.201;QD=16.74;ReadPosRankSum=1.696;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1623,189,0 chrXIII 209980 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.16;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1560,180,0 chrXIII 210513 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.35;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1641,174,0 chrXIII 210532 . G T 1620 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.04;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1653,180,0 chrXIII 210609 . G A 2975 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.25;SB=-1.711e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3008,318,0 chrXIII 210658 . C T 2757 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.79;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2790,297,0 chrXIII 210688 . G A 2335 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.42;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2368,267,0 chrXIII 210839 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.28;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1949,213,0 chrXIII 210889 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=2.642;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.170;QD=18.28;ReadPosRankSum=2.388;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1477,165,0 chrXIII 210922 . T A 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-0.721;QD=20.05;ReadPosRankSum=2.397;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1918,210,0 chrXIII 211049 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.58;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1954,219,0 chrXIII 211894 . C T 1235 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1268,135,0 chrXIII 212435 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.39;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1309,150,0 chrXIII 212592 . C G 1575 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.28;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1608,180,0 chrXIII 212859 . T C 2399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.015;QD=20.86;ReadPosRankSum=1.702;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2432,273,0 chrXIII 213168 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.90;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2056,228,0 chrXIII 213502 . A G 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.736;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.533;QD=22.75;ReadPosRankSum=1.688;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1830,204,0 chrXIII 213709 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=82;Dels=0.00;FS=3.040;HaplotypeScore=7.8222;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.556;QD=18.29;ReadPosRankSum=2.390;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1533,174,0 chrXIII 213972 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.68;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1938,207,0 chrXIII 214086 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=16.16;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1859,198,0 chrXIII 214378 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.630;QD=18.91;ReadPosRankSum=1.664;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1962,219,0 chrXIII 214498 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.9332;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.61;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2382,264,0 chrXIII 214608 . C T 927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=65;Dels=0.00;FS=3.382;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.392;QD=14.26;ReadPosRankSum=-1.448;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:82:960,82,0 chrXIII 215334 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6261;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.14;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1564,177,0 chrXIII 215391 . A G 1544 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.32;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1577,180,0 chrXIII 215544 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.89;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1823,198,0 chrXIII 215595 . T C 2992 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.19;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:3025,330,0 chrXIII 215788 . C A 2065 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.94;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2098,231,0 chrXIII 215820 . C A 1585 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8850;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.58;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1618,180,0 chrXIII 215994 . T C 2760 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.40;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:2793,324,0 chrXIII 216027 . C T 2483 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=17.61;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2516,276,0 chrXIII 216105 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1878,210,0 chrXIII 216321 . A C 2217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.163;QD=20.92;ReadPosRankSum=1.634;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2250,249,0 chrXIII 216327 . C A 2180 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=9.3874;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.47;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2213,243,0 chrXIII 216942 . A T 2111 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3756;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.32;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2144,228,0 chrXIII 217030 . T G 3361.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.060;QD=24.90;ReadPosRankSum=1.706;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,133:135:99:3361,372,0 chrXIII 217129 . T A 2732 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.39;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2765,294,0 chrXIII 217169 . G T 2385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.0863;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.035;QD=23.38;ReadPosRankSum=-0.530;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,98:102:99:2418,261,0 chrXIII 217312 . C A 2604 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.83;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2637,288,0 chrXIII 217436 . C T 3041 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.76;SB=-1.703e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3074,327,0 chrXIII 217508 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.14;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2468,261,0 chrXIII 217557 . A C 2803 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.07;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2836,315,0 chrXIII 217558 . T C 2797 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.85;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2830,321,0 chrXIII 218127 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.31;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1205,138,0 chrXIII 218138 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.16;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1489,159,0 chrXIII 218786 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.21;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1933,204,0 chrXIII 218827 . A T 2144 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.88;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2177,237,0 chrXIII 218882 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.78;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1562,177,0 chrXIII 218963 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1873,198,0 chrXIII 219015 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.96;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1524,171,0 chrXIII 219146 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.058;HaplotypeScore=7.8235;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.704;QD=21.10;ReadPosRankSum=1.618;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1995,219,0 chrXIII 219326 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.31;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2061,222,0 chrXIII 219608 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.68;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1922,219,0 chrXIII 219620 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.15;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1884,207,0 chrXIII 219807 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.15;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2011,234,0 chrXIII 219863 . T C 3203 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.99;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,176:178:99:3236,354,0 chrXIII 221642 . T C 2398 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=3.655;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.926;QD=20.67;ReadPosRankSum=1.672;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2431,279,0 chrXIII 221745 . C A 1844 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4347;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.41;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1877,204,0 chrXIII 222383 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.90;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2055,228,0 chrXIII 224312 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9822;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.35;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1997,213,0 chrXIII 224338 . A C 1236 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=17.91;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1269,147,0 chrXIII 224339 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=17.67;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1252,147,0 chrXIII 224490 . G C 986 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.43;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1019,117,0 chrXIII 224985 . C A 1815 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1848,210,0 chrXIII 225259 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=69;Dels=0.00;FS=6.435;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.260;QD=19.64;ReadPosRankSum=1.680;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1388,156,0 chrXIII 225383 . A G 2221 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.01;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.98;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2254,252,0 chrXIII 225562 . T G 2544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.756;QD=22.92;ReadPosRankSum=2.405;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,107:111:99:2577,294,0 chrXIII 225706 . G A 1485 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.85;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1518,162,0 chrXIII 225925 . G A 2534 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.29;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2567,276,0 chrXIII 225992 . C A 1843 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.03;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1876,204,0 chrXIII 226024 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6971;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.87;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2137,231,0 chrXIII 226071 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.8197;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.70;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2000,222,0 chrXIII 226121 . C A 1177 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=22.63;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1210,129,0 chrXIII 226133 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.40;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1298,138,0 chrXIII 226822 . A T 354 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:42:387,42,0 chrXIII 227207 . T G 2089 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2122,234,0 chrXIII 227957 . G A 760 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.00;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:793,84,0 chrXIII 227975 . T G 714 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.00;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:747,81,0 chrXIII 227978 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.02;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:674,75,0 chrXIII 228182 . A C 660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5378;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=0.671;QD=10.65;ReadPosRankSum=0.559;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:78:693,78,0 chrXIII 228183 . C T 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5378;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=0.062;QD=11.35;ReadPosRankSum=1.709;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,58:62:81:737,81,0 chrXIII 228217 . C T 780 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=11.82;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:90:813,90,0 chrXIII 229206 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1500,159,0 chrXIII 229786 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.87;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1326,141,0 chrXIII 229941 . A G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.832;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.777;QD=18.79;ReadPosRankSum=1.673;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1123,126,0 chrXIII 230928 . A G 2839 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.6246;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.58;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,144:145:99:2872,321,0 chrXIII 230942 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.7288;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.03;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2757,309,0 chrXIII 230996 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.65;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1975,216,0 chrXIII 231000 . A T 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=115;Dels=0.00;FS=4.364;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.031;QD=14.83;ReadPosRankSum=1.701;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1739,195,0 chrXIII 231292 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9686;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.68;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1789,195,0 chrXIII 231382 . A G 2329 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.56;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2362,264,0 chrXIII 231408 . A T 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.378;HaplotypeScore=6.8411;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.451;QD=20.55;ReadPosRankSum=1.701;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2314,249,0 chrXIII 231506 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.34;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1696,186,0 chrXIII 231733 . T G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=116;Dels=0.00;FS=2.965;HaplotypeScore=8.3967;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.223;QD=20.55;ReadPosRankSum=2.407;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2417,276,0 chrXIII 232186 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.47;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1718,186,0 chrXIII 232662 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.36;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2802,303,0 chrXIII 232771 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.28;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1872,207,0 chrXIII 232832 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1741,186,0 chrXIII 233147 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.088;QD=17.08;ReadPosRankSum=1.674;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1041,117,0 chrXIII 233936 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.21;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2302,252,0 chrXIII 234444 . A G 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.281;QD=19.22;ReadPosRankSum=1.657;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:917,102,0 chrXIII 234475 . T C 946 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:979,108,0 chrXIII 235023 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.16;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1472,165,0 chrXIII 235740 . A G 2432 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.15;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2465,276,0 chrXIII 235798 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.52;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2208,237,0 chrXIII 236370 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=23.69;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2189,234,0 chrXIII 236833 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.64;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1686,183,0 chrXIII 237159 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.54;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1208,141,0 chrXIII 237477 . T C 1172 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=20.93;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1205,138,0 chrXIII 237965 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.56;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1771,195,0 chrXIII 238751 . A G 310 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=9.0525;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=8.61;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:39:343,39,0 chrXIII 238946 . T C 590 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:623,69,0 chrXIII 239069 . G A 637 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=21.23;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:670,75,0 chrXIII 239124 . A G 429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=2.246;QD=17.87;ReadPosRankSum=2.246;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,22:24:51:462,51,0 chrXIII 239545 . C T 1203 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1236,132,0 chrXIII 239731 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.00;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1275,141,0 chrXIII 239887 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1206,135,0 chrXIII 239938 . T C 1311 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1344,156,0 chrXIII 240460 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.79;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:620,66,0 chrXIII 240594 . T C 3129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.275;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.485;QD=24.83;ReadPosRankSum=0.275;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,125:126:99:3162,324,0 chrXIII 241036 . C T 3335.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-1.890e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3335,357,0 chrXIII 241545 . G C 1093 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.53;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1126,132,0 chrXIII 241597 . C T 1582 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.77;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1615,174,0 chrXIII 241669 . C T 1019 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1052,111,0 chrXIII 242853 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.71;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1531,162,0 chrXIII 242904 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.14;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1698,183,0 chrXIII 243473 . A G 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=115;Dels=0.00;FS=4.325;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.515;QD=21.83;ReadPosRankSum=1.670;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2543,279,0 chrXIII 243607 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.48;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2098,225,0 chrXIII 243777 . G T 2628 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.68;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2661,285,0 chrXIII 244001 . G C 1769 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.24;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1802,207,0 chrXIII 244359 . C T 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4112;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.361;QD=18.02;ReadPosRankSum=1.691;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1583,153,0 chrXIII 245572 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=23.75;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2550,279,0 chrXIII 245624 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.42;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1654,180,0 chrXIII 245628 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.731;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.591;QD=17.73;ReadPosRankSum=1.691;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1540,174,0 chrXIII 245675 . T G 1007 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=13.61;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1040,120,0 chrXIII 246172 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.84;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2217,240,0 chrXIII 246258 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.41;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2238,240,0 chrXIII 246508 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.2653;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.90;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2248,246,0 chrXIII 246803 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1761,198,0 chrXIII 246910 . A T 1805 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.24;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1838,198,0 chrXIII 247126 . T C 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.29;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1656,186,0 chrXIII 247484 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.61;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1426,153,0 chrXIII 247728 . T G 2448 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.77;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2481,276,0 chrXIII 248834 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1587,171,0 chrXIII 249362 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.55;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2447,273,0 chrXIII 249476 . T C 2653 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.87;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2686,306,0 chrXIII 249527 . T C 2384 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2417,264,0 chrXIII 250529 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.84;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1407,159,0 chrXIII 250706 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3646;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.55;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1174,129,0 chrXIII 251274 . A C 1853 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.59;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1886,210,0 chrXIII 253274 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.66;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1913,216,0 chrXIII 253290 . G C 1816 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.64;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1849,204,0 chrXIII 253309 . T C 1927 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.66;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1960,216,0 chrXIII 253500 . G T 1129 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.60;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1162,123,0 chrXIII 253503 . G T 1066 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.40;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1099,117,0 chrXIII 253544 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.88;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1367,147,0 chrXIII 254427 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1305,150,0 chrXIII 255569 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2017,222,0 chrXIII 256359 . G T 1726 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.01;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1759,189,0 chrXIII 257811 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2008,228,0 chrXIII 259602 . C T 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.589;QD=22.70;ReadPosRankSum=1.628;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2303,252,0 chrXIII 259663 . T C 2521 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.17;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2554,282,0 chrXIII 260199 . T G 1714 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1747,195,0 chrXIII 260334 . T C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.736;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.711;QD=20.15;ReadPosRankSum=1.688;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1605,180,0 chrXIII 260437 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.41;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1870,210,0 chrXIII 260462 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.538;QD=20.87;ReadPosRankSum=1.654;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1911,216,0 chrXIII 260580 . T C 3077 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.79;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3110,351,0 chrXIII 260820 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.79;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1904,207,0 chrXIII 261191 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=3.021;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.324;QD=18.31;ReadPosRankSum=2.296;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1498,168,0 chrXIII 261864 . A G 887 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.74;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:920,105,0 chrXIII 262219 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.90;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1500,162,0 chrXIII 262578 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.38;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2226,243,0 chrXIII 262645 . T C 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.158;DP=80;Dels=0.00;FS=2.825;HaplotypeScore=12.4840;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.509;QD=18.45;ReadPosRankSum=2.353;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:2,74:80:99:1509,171,0 chrXIII 262749 . T C 920 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.00;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:953,108,0 chrXIII 262790 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.51;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1044,111,0 chrXIII 262818 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.28;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1250,135,0 chrXIII 262820 . G C 1121 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.79;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1154,132,0 chrXIII 262898 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2534;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.92;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2233,246,0 chrXIII 262958 . G A 2097 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.07;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2130,234,0 chrXIII 263216 . A G 1042 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=15.55;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1075,120,0 chrXIII 263244 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=14.76;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1184,126,0 chrXIII 264868 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.00;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1617,171,0 chrXIII 265251 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.09;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2480,282,0 chrXIII 265559 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3104;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.46;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1997,219,0 chrXIII 265689 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.81;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2370,261,0 chrXIII 266166 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1309,144,0 chrXIII 266327 . C A 1070 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.32;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1103,117,0 chrXIII 266827 . A G 1244 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.108;QD=20.39;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1277,144,0 chrXIII 267926 . T A 109.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.66;SB=-5.714e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:142,15,0 chrXIII 267945 . T C 126.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=14.01;SB=-2.611e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:159,18,0 chrXIII 268094 . T A 78.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=4.62;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:111,12,0 chrXIII 268102 . T G 128.13 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=6.74;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,19:19:18:161,18,0 chrXIII 268153 . A G 446 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=15.38;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:51:479,51,0 chrXIII 268427 . C A 863 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=24.66;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:896,96,0 chrXIII 268589 . C A 815 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:848,90,0 chrXIII 268655 . G A 820 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:853,90,0 chrXIII 268760 . A C 841 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:874,99,0 chrXIII 269778 . C T 1748 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.42;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1781,195,0 chrXIII 270183 . T G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2594;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.419;QD=22.66;ReadPosRankSum=1.696;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2208,243,0 chrXIII 271464 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.66;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1547,171,0 chrXIII 271672 . A C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.840;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.017;QD=22.70;ReadPosRankSum=1.694;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2121,237,0 chrXIII 273267 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.31;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1069,123,0 chrXIII 273984 . C A 2563 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.36;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2596,288,0 chrXIII 274088 . C T 2252 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2285,249,0 chrXIII 274730 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2498,291,0 chrXIII 275537 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.86;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1454,156,0 chrXIII 275767 . C T 2393 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.28;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2426,267,0 chrXIII 275773 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.56;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2075,231,0 chrXIII 275910 . C G 3666.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.49;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3666,423,0 chrXIII 275940 . G T 3640.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.41;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,164:170:99:3640,402,0 chrXIII 276350 . A G 1897 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2364;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.461;QD=17.25;ReadPosRankSum=1.700;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1930,213,0 chrXIII 276659 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.92;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1560,174,0 chrXIII 277164 . A G 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.276;QD=18.67;ReadPosRankSum=1.687;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1452,165,0 chrXIII 277293 . T G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.634;QD=20.09;ReadPosRankSum=2.375;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:2,97:100:99:2042,237,0 chrXIII 278550 . C G 2775 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.71;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2808,309,0 chrXIII 278881 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.316;QD=22.27;ReadPosRankSum=1.640;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1703,195,0 chrXIII 279058 . C A 2357 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7668;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.48;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2390,255,0 chrXIII 279616 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1555,168,0 chrXIII 281241 . A G 2130 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.09;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2163,237,0 chrXIII 282022 . T C 2682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.644;QD=22.17;ReadPosRankSum=1.675;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2715,300,0 chrXIII 282723 . A G 2176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.204;DP=103;Dels=0.00;FS=2.720;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.185;QD=21.13;ReadPosRankSum=2.401;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,98:103:99:2209,243,0 chrXIII 282738 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.50;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2463,267,0 chrXIII 283144 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.507;QD=18.62;ReadPosRankSum=1.648;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1560,174,0 chrXIII 283368 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.07;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1311,147,0 chrXIII 283596 . C G 1078 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.96;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1111,123,0 chrXIII 283853 . G T 1569 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1602,174,0 chrXIII 284491 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1423;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.90;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1340,144,0 chrXIII 284507 . T C 1321 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=17.16;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1354,150,0 chrXIII 285133 . A G 2383 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.90;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2416,267,0 chrXIII 285222 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.11;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1384,150,0 chrXIII 285345 . A C 914 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:947,105,0 chrXIII 285414 . T C 1554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=7.570;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.520;QD=19.42;ReadPosRankSum=1.689;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1587,186,0 chrXIII 285468 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.22;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1633,177,0 chrXIII 285831 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.86;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:995,111,0 chrXIII 285841 . C T 969 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=22.53;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1002,105,0 chrXIII 285936 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.38;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1062,111,0 chrXIII 286020 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1260,135,0 chrXIII 286104 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.4727;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.60;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2020,216,0 chrXIII 286123 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.05;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1878,210,0 chrXIII 286312 . C G 1467 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.81;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1500,168,0 chrXIII 286779 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0106;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.51;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2687,291,0 chrXIII 287411 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.20;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:588,63,0 chrXIII 287879 . A C 1033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.955;QD=21.08;ReadPosRankSum=1.662;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1066,120,0 chrXIII 287910 . C T 1108 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=44.1320;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.91;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1141,123,0 chrXIII 287924 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.62;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:949,108,0 chrXIII 288024 . T C 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.831;QD=21.30;ReadPosRankSum=1.697;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2163,243,0 chrXIII 288031 . T C 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=105;Dels=0.00;FS=3.020;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.231;QD=19.72;ReadPosRankSum=2.403;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2104,234,0 chrXIII 288433 . T A 2187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.975;DP=124;Dels=0.00;FS=9.247;HaplotypeScore=10.4369;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.124;QD=17.64;ReadPosRankSum=3.238;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:4,118:124:99:2220,223,0 chrXIII 288558 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1997,225,0 chrXIII 289183 . T C 1693 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.10;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1726,192,0 chrXIII 289227 . T C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.010;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.335;QD=17.49;ReadPosRankSum=1.660;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1730,195,0 chrXIII 289416 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.53;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1983,213,0 chrXIII 289866 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.96;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1824,195,0 chrXIII 289963 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.01;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1870,207,0 chrXIII 290135 . C G 2086 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.83;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2119,234,0 chrXIII 290137 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.98;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2083,222,0 chrXIII 290194 . T C 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9707;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=1.135;QD=14.62;ReadPosRankSum=1.314;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1729,189,0 chrXIII 290366 . T C 3141 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.48;SB=-1.664e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3174,357,0 chrXIII 290445 . A G 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4273;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.205;QD=20.85;ReadPosRankSum=1.705;SB=-1.614e+03 GT:AD:DP:GQ:PL 1/1:1,126:128:99:2702,303,0 chrXIII 290456 . A C 2625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.950;QD=21.17;ReadPosRankSum=1.704;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2658,300,0 chrXIII 290482 . A C 2317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1921;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=1.669;QD=21.06;ReadPosRankSum=1.701;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2350,261,0 chrXIII 290576 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.38;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1874,204,0 chrXIII 290664 . T A 2258 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.72;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2291,249,0 chrXIII 290867 . G T 770 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.33;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:803,87,0 chrXIII 291003 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0906;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.87;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1306,147,0 chrXIII 291392 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.54;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1327,150,0 chrXIII 291877 . T C 1625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=21.38;ReadPosRankSum=1.641;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1658,189,0 chrXIII 292060 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.51;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1856,198,0 chrXIII 292852 . A T 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.304;QD=22.86;ReadPosRankSum=1.689;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1885,204,0 chrXIII 294133 . A G 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.657;QD=19.20;ReadPosRankSum=1.657;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:916,102,0 chrXIII 294166 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=15.07;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:892,102,0 chrXIII 295343 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.87;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1498,162,0 chrXIII 295950 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1989,213,0 chrXIII 296427 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=4.276;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.390;QD=21.40;ReadPosRankSum=1.694;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2002,231,0 chrXIII 298131 . T A 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.388;QD=21.87;ReadPosRankSum=1.681;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1498,159,0 chrXIII 298845 . T C 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2728;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.397;QD=22.09;ReadPosRankSum=1.695;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2132,243,0 chrXIII 299287 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.05;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1837,204,0 chrXIII 301274 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.32;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2101,231,0 chrXIII 302932 . T A 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.90;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,135,0 chrXIII 303266 . A G 1791 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.83;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1824,210,0 chrXIII 303314 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1815,207,0 chrXIII 303419 . T A 2411 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.26;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2444,261,0 chrXIII 303638 . A T 3116 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.79;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3149,342,0 chrXIII 303930 . C G 2179 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.16;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2212,246,0 chrXIII 304117 . G A 2258 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.92;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2291,243,0 chrXIII 304118 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.23;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2323,246,0 chrXIII 304595 . T C 2557 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.62;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2590,288,0 chrXIII 305192 . T A 38.97 filter AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=109.8786;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=0.30;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:9:71,9,0 chrXIII 305303 . A G 2347 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8142;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.89;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2380,258,0 chrXIII 305614 . G T 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.842;QD=15.08;ReadPosRankSum=1.605;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:1722,195,0 chrXIII 305615 . T A 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=112;Dels=0.00;FS=4.155;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.121;QD=15.50;ReadPosRankSum=2.340;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1769,195,0 chrXIII 305906 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.34;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1597,174,0 chrXIII 306044 . G A 2122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.589;QD=20.60;ReadPosRankSum=0.320;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2155,219,0 chrXIII 306769 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.47;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1686,180,0 chrXIII 307008 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.35;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1886,210,0 chrXIII 307024 . T C 1676 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.02;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1709,192,0 chrXIII 307069 . T G 1300 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.06;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1333,150,0 chrXIII 307133 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=24.29;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1612,177,0 chrXIII 307190 . T C 1054 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.51;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1087,120,0 chrXIII 307219 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.42;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1197,126,0 chrXIII 307416 . T C 1357 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.96;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1390,153,0 chrXIII 307426 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.87;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1231,138,0 chrXIII 307541 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.39;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1645,183,0 chrXIII 307796 . G A 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.377;QD=20.28;ReadPosRankSum=1.643;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1635,177,0 chrXIII 308296 . T A 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.5443;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.936;QD=22.39;ReadPosRankSum=1.685;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1735,189,0 chrXIII 308353 . G C 2167 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2200,249,0 chrXIII 308827 . C A 681 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.92;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:714,81,0 chrXIII 309285 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.57;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1184,126,0 chrXIII 309296 . T C 977 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.79;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1010,111,0 chrXIII 310154 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.04;FS=0.000;HaplotypeScore=9.3589;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.21;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1362,144,0 chrXIII 310178 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0811;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.01;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1240,144,0 chrXIII 310337 . G C 808 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.71;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:41:96:841,96,0 chrXIII 310534 . C T 2197 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.53;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2230,249,0 chrXIII 310687 . C T 2363 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4264;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.63;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2396,261,0 chrXIII 310813 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2081,225,0 chrXIII 311235 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.87;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1840,198,0 chrXIII 311868 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.37;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1666,183,0 chrXIII 312012 . G C 1841 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.18;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1874,207,0 chrXIII 312074 . C A 1657 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1690,180,0 chrXIII 312217 . A G 1590 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.92;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1623,183,0 chrXIII 312247 . A T 1576 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=74.8130;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.76;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1609,177,0 chrXIII 313051 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.55;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2047,219,0 chrXIII 313064 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.86;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1900,204,0 chrXIII 313329 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.7700;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.74;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:987,108,0 chrXIII 314570 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.79;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2131,237,0 chrXIII 315372 . T A 1332 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.58;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1365,147,0 chrXIII 315485 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1509,168,0 chrXIII 315598 . A G 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.142;QD=22.82;ReadPosRankSum=1.675;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1425,159,0 chrXIII 316408 . T G 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.94;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1503,168,0 chrXIII 316423 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.86;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1607,174,0 chrXIII 316587 . A C 1622 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.34;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1655,189,0 chrXIII 316612 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.42;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1961,210,0 chrXIII 316732 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.23;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1710,186,0 chrXIII 317105 . A T 1407 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.33;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1440,159,0 chrXIII 317648 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.75;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1251,144,0 chrXIII 317750 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1826,198,0 chrXIII 318108 . A C 2102 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.67;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2135,240,0 chrXIII 318454 . C G 2339 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.66;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2372,267,0 chrXIII 318856 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2937;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.78;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1799,192,0 chrXIII 319247 . T C 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.928;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.701;QD=22.93;ReadPosRankSum=1.691;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1959,216,0 chrXIII 319327 . A G 1032 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.49;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1065,117,0 chrXIII 319443 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.749;QD=22.74;ReadPosRankSum=1.685;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1716,186,0 chrXIII 319703 . A G 1182 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.18;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1215,135,0 chrXIII 319767 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.91;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2003,228,0 chrXIII 319884 . A G 2449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.165;QD=22.06;ReadPosRankSum=1.701;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2482,273,0 chrXIII 319962 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.14;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1893,219,0 chrXIII 319980 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.95;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1663,180,0 chrXIII 320282 . T C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.713;QD=15.59;ReadPosRankSum=1.664;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,101:106:99:1686,186,0 chrXIII 320292 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1658;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.35;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1635,174,0 chrXIII 321232 . A G 368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=5.49;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:45:401,45,0 chrXIII 321235 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260;DP=39;Dels=0.00;FS=28.698;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;MQRankSum=-0.796;QD=0.31;ReadPosRankSum=-1.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:37,2:39:6:43,6,0 chrXIII 321247 . A C 78.51 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=1.83;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:12:111,12,0 chrXIII 321532 . A T 1126 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=24.48;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1159,123,0 chrXIII 321660 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.82;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2219,234,0 chrXIII 321768 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.40;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1066,117,0 chrXIII 321868 . A G 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.333;DP=73;Dels=0.00;FS=9.401;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.764;QD=21.64;ReadPosRankSum=3.333;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:4,69:73:99:1613,180,0 chrXIII 322684 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.25;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2058,228,0 chrXIII 322885 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.51;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1555,177,0 chrXIII 323081 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.85;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2139,225,0 chrXIII 323439 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1305;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.22;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1900,213,0 chrXIII 323942 . A G 770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-1.390;QD=15.71;ReadPosRankSum=2.350;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:90:803,90,0 chrXIII 323949 . G A 710 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=16.51;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:743,78,0 chrXIII 324005 . A T 332 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=13.28;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:39:365,39,0 chrXIII 324023 . T G 340 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=14.78;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:42:373,42,0 chrXIII 324028 . G A 323 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.38;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:39:356,39,0 chrXIII 324034 . T G 287 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=13.05;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:36:320,36,0 chrXIII 324107 . C T 473 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.26;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:506,54,0 chrXIII 324350 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.73;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1250,138,0 chrXIII 324431 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.56;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1305,141,0 chrXIII 324569 . G A 1873 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.41;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1906,207,0 chrXIII 324584 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.71;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1689,195,0 chrXIII 324727 . C G 1298 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.54;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1331,153,0 chrXIII 324879 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.16;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1850,198,0 chrXIII 325046 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.09;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1764,189,0 chrXIII 325160 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2225,240,0 chrXIII 325675 . A G 2034 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.372;QD=19.01;ReadPosRankSum=1.700;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2067,234,0 chrXIII 325728 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.2652;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.28;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2354,267,0 chrXIII 325905 . T A 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=84;Dels=0.00;FS=9.233;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.906;QD=21.54;ReadPosRankSum=2.391;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1842,192,0 chrXIII 326203 . G C 1798 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1831,213,0 chrXIII 326419 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.94;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1681,186,0 chrXIII 326503 . A T 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=4.102;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.251;QD=21.99;ReadPosRankSum=1.636;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1638,180,0 chrXIII 327622 . A C 1306 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.06;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1339,153,0 chrXIII 327938 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.82;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1386,156,0 chrXIII 328333 . C T 1795 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1828,198,0 chrXIII 328866 . T C 1254 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.751;QD=20.90;ReadPosRankSum=1.675;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1287,144,0 chrXIII 329673 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.61;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1196,132,0 chrXIII 330241 . C T 2186 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.69;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2219,240,0 chrXIII 330384 . C G 2448 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.77;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2481,273,0 chrXIII 330411 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5671;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.64;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2110,234,0 chrXIII 330481 . T C 1738 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2480;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.98;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1771,198,0 chrXIII 330584 . T C 1936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=3.039;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.228;QD=21.04;ReadPosRankSum=2.396;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1969,222,0 chrXIII 330772 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.10;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2158,228,0 chrXIII 330819 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.15;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2381,252,0 chrXIII 332144 . G A 792 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:93:825,93,0 chrXIII 332209 . C A 767 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=26.45;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,28:29:84:800,84,0 chrXIII 332507 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.80;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1145,123,0 chrXIII 332732 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.93;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1388,156,0 chrXIII 332749 . T C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.294;QD=15.92;ReadPosRankSum=2.372;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:2,61:66:99:1084,123,0 chrXIII 332932 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=6.596;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.615;QD=21.51;ReadPosRankSum=2.377;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2227,249,0 chrXIII 333053 . T G 1865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.469;QD=19.43;ReadPosRankSum=1.696;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1898,210,0 chrXIII 333079 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.83;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1976,219,0 chrXIII 333260 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.01;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1218,129,0 chrXIII 333421 . A G 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=84;Dels=0.00;FS=2.735;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.223;QD=20.43;ReadPosRankSum=2.391;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1749,195,0 chrXIII 333449 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.19;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1645,183,0 chrXIII 333839 . T G 1684 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.14;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1717,198,0 chrXIII 333862 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.04;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1785,207,0 chrXIII 334177 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.86;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1493,162,0 chrXIII 334222 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=14.37;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1298,147,0 chrXIII 334573 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=16.16;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:938,102,0 chrXIII 334591 . T C 846 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.38;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:879,102,0 chrXIII 334705 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.669;QD=20.25;ReadPosRankSum=1.575;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2260,255,0 chrXIII 334830 . T G 2857 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.04;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2890,324,0 chrXIII 334870 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0881;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.94;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1834,210,0 chrXIII 335192 . C T 2249 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.95;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2282,243,0 chrXIII 335225 . A G 1772 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.14;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1805,201,0 chrXIII 335290 . G C 1627 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1660,186,0 chrXIII 335383 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.79;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1558,165,0 chrXIII 335404 . T A 1673 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.01;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1706,189,0 chrXIII 335519 . A G 2026 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.06;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2059,231,0 chrXIII 335573 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.83;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2544,267,0 chrXIII 335870 . T A 2024 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.87;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2057,225,0 chrXIII 336381 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=1.024;QD=20.38;ReadPosRankSum=1.658;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1928,219,0 chrXIII 336407 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.377;QD=20.95;ReadPosRankSum=1.694;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1981,228,0 chrXIII 336566 . C T 3049 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.1490;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.82;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3082,327,0 chrXIII 336610 . A G 2955 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.38;SB=-1.728e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:2988,345,0 chrXIII 336629 . T C 2973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.754;DP=152;Dels=0.00;FS=6.061;HaplotypeScore=9.6938;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.393;QD=19.56;ReadPosRankSum=2.940;SB=-1.731e+03 GT:AD:DP:GQ:PL 1/1:3,148:152:99:3006,336,0 chrXIII 336784 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.20;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2556,273,0 chrXIII 336802 . C A 2808 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.11;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2841,303,0 chrXIII 336845 . C T 2390 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.15;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2423,270,0 chrXIII 337352 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.41;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2207,243,0 chrXIII 337377 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.25;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1823,192,0 chrXIII 337418 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.13;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:979,105,0 chrXIII 337455 . G A 901 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.2182;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.00;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:934,102,0 chrXIII 337496 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.9347;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1138,129,0 chrXIII 337654 . C A 1555 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.19;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1588,174,0 chrXIII 337732 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=1.9134;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.07;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1417,153,0 chrXIII 337869 . G C 1275 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.21;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1308,150,0 chrXIII 337875 . T C 1271 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.42;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1304,144,0 chrXIII 338041 . G C 1573 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1606,180,0 chrXIII 338329 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.04;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1906,210,0 chrXIII 338515 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.650;QD=20.04;ReadPosRankSum=1.696;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1957,219,0 chrXIII 338548 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.94;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1766,195,0 chrXIII 338800 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3071;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.58;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1893,207,0 chrXIII 338845 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.42;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1626,177,0 chrXIII 339328 . G A 2094 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=20.33;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2127,231,0 chrXIII 339496 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.03;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1568,174,0 chrXIII 339545 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4252;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.28;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1404,159,0 chrXIII 339552 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.37;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1505,165,0 chrXIII 339619 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.70;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1333,147,0 chrXIII 339889 . A G 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.178;QD=17.11;ReadPosRankSum=1.686;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1316,150,0 chrXIII 340672 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.63;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1486,174,0 chrXIII 340680 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.27;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1517,165,0 chrXIII 340711 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=15.61;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1126,120,0 chrXIII 340731 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=15.28;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1118,126,0 chrXIII 340779 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.35;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1833,207,0 chrXIII 340887 . T C 1307 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6114;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.93;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1340,150,0 chrXIII 341020 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.97;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1307,141,0 chrXIII 341111 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.121;QD=22.66;ReadPosRankSum=1.681;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1574,171,0 chrXIII 341687 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.12;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1351,153,0 chrXIII 341834 . A G 2384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=112;Dels=0.00;FS=8.507;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-2.272;QD=21.29;ReadPosRankSum=2.272;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2417,270,0 chrXIII 342279 . A G 1516 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=20.49;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1549,177,0 chrXIII 342294 . A G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-1.010;QD=19.07;ReadPosRankSum=1.684;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1444,165,0 chrXIII 342513 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.97;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1291,144,0 chrXIII 342543 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.56;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1364,147,0 chrXIII 342711 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=15.84;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1205,132,0 chrXIII 342726 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=14.75;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1154,126,0 chrXIII 342743 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=16.56;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1374,150,0 chrXIII 342941 . T C 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=2.829;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.284;QD=20.98;ReadPosRankSum=2.348;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1040,120,0 chrXIII 343086 . G A 1336 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.55;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1369,150,0 chrXIII 343236 . A C 1487 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1520,171,0 chrXIII 343341 . C A 1335 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1368,150,0 chrXIII 343377 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1245,138,0 chrXIII 344029 . T G 1017 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.16;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1050,111,0 chrXIII 344043 . G A 841 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=15.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,53:53:93:874,93,0 chrXIII 344045 . C T 805 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=15.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:93:838,93,0 chrXIII 344260 . A G 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=29;Dels=0.00;FS=6.107;HaplotypeScore=3.4264;MLEAC=1;MLEAF=0.500;MQ=58.21;MQ0=0;MQRankSum=-0.996;QD=0.59;ReadPosRankSum=-0.362;SB=-6.476e-03 GT:AD:DP:GQ:PL 0/1:11,18:29:47:47,0,94 chrXIII 344475 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.04;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2293,243,0 chrXIII 344538 . T C 2080 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.37;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2113,234,0 chrXIII 344736 . A G 3056 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.33;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:3089,339,0 chrXIII 344829 . C T 2574 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.80;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2607,276,0 chrXIII 344883 . T C 2112 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.69;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2145,249,0 chrXIII 344937 . A G 1932 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.06;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1965,216,0 chrXIII 344952 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.45;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2044,228,0 chrXIII 345132 . G A 3434.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.05;SB=-1.789e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3434,366,0 chrXIII 345183 . T C 3171 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.65;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3204,363,0 chrXIII 345265 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.07;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1839,204,0 chrXIII 345513 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.016;QD=19.50;ReadPosRankSum=1.703;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2392,270,0 chrXIII 346157 . A G 2131 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.20;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2164,240,0 chrXIII 346162 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.71;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2222,234,0 chrXIII 346284 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.95;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1939,213,0 chrXIII 346482 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.161;QD=19.77;ReadPosRankSum=1.652;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1733,192,0 chrXIII 346988 . G A 2215 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.56;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2248,237,0 chrXIII 347381 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7722;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.89;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1519,171,0 chrXIII 347586 . A G 2750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=8.045;HaplotypeScore=11.6002;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.605;QD=21.32;ReadPosRankSum=2.411;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2783,315,0 chrXIII 347780 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.81;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1558,180,0 chrXIII 347796 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0832;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.77;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1595,180,0 chrXIII 347877 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.8087;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-0.742;QD=10.90;ReadPosRankSum=1.703;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:1363,156,0 chrXIII 348033 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.16;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1407,153,0 chrXIII 348582 . A T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=-0.584;QD=0.43;ReadPosRankSum=-3.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,6:23:40:40,0,220 chrXIII 348585 . C T 332 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.09;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:42:365,42,0 chrXIII 348806 . A T 1536 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.60;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1569,171,0 chrXIII 349004 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.34;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1548,171,0 chrXIII 349796 . G A 2567 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.0351;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.57;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2600,288,0 chrXIII 349853 . T C 2794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.293;DP=124;Dels=0.00;FS=10.252;HaplotypeScore=11.9174;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.297;QD=22.53;ReadPosRankSum=4.426;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:7,115:124:99:2827,312,0 chrXIII 349925 . A T 2271 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2779;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.94;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2304,249,0 chrXIII 350056 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=15.94;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1165,132,0 chrXIII 350057 . A G 1211 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=16.59;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1244,138,0 chrXIII 350097 . A G 1233 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.01;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1266,147,0 chrXIII 350144 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7374;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.02;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1871,213,0 chrXIII 350240 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=99;Dels=0.00;FS=4.230;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=0.530;QD=15.82;ReadPosRankSum=1.697;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1599,177,0 chrXIII 350249 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2195;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=15.04;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1462,165,0 chrXIII 350297 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=11.93;SB=-1.353e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1286,138,0 chrXIII 350311 . T A 1007 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=10.95;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1040,114,0 chrXIII 350323 . G A 946 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=10.06;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:979,111,0 chrXIII 350334 . T G 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=3.033;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=-0.887;QD=12.04;ReadPosRankSum=2.397;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1153,129,0 chrXIII 350595 . G A 1705 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.73;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1738,183,0 chrXIII 350752 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.92;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1602,174,0 chrXIII 350863 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.08;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1380,150,0 chrXIII 351458 . G A 2543 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.18;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2576,279,0 chrXIII 351470 . C T 2443 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.86;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2476,264,0 chrXIII 351704 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7902;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.77;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1622,186,0 chrXIII 351754 . T C 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.649;QD=20.96;ReadPosRankSum=1.690;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1773,195,0 chrXIII 351904 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.39;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1705,183,0 chrXIII 352053 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1493,165,0 chrXIII 352231 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.22;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1811,192,0 chrXIII 352262 . A G 1428 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.83;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1461,165,0 chrXIII 352504 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.83;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1299,138,0 chrXIII 352513 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.99;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1392,156,0 chrXIII 352695 . G C 1509 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.86;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1542,171,0 chrXIII 353429 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.19;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1543,165,0 chrXIII 353585 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.89;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1097,117,0 chrXIII 354296 . A G 2416 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.87;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2449,285,0 chrXIII 354389 . T C 2392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.7630;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.277;QD=17.21;ReadPosRankSum=1.682;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:1,137:139:99:2425,273,0 chrXIII 355165 . T C 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.522;QD=25.92;ReadPosRankSum=1.680;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1744,192,0 chrXIII 355413 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.54;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1479,165,0 chrXIII 355563 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=17.66;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1658,192,0 chrXIII 355571 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.54;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1776,204,0 chrXIII 355763 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=20.29;ReadPosRankSum=1.680;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1372,159,0 chrXIII 356149 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.33;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2039,219,0 chrXIII 356409 . G C 1360 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.89;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1393,159,0 chrXIII 356427 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.49;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1631,183,0 chrXIII 356463 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.58;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1782,195,0 chrXIII 357001 . C A 729 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=16.95;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:762,84,0 chrXIII 361633 . A G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.63;MQ0=13;QD=0.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:6:52,6,0 chrXIII 361636 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.63;MQ0=13;QD=0.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:6:45,6,0 chrXIII 362956 . G A 582 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=10.03;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:66:615,66,0 chrXIII 362969 . G A 629 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=10.48;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:72:662,72,0 chrXIII 362992 . G A 675 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=11.25;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:75:708,75,0 chrXIII 363033 . C T 494 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=8.23;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:57:527,57,0 chrXIII 363034 . C T 520 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=8.97;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:60:553,60,0 chrXIII 363052 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.73;MQ0=0;QD=12.03;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:911,105,0 chrXIII 363055 . T C 948 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=12.81;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:981,108,0 chrXIII 363391 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.80;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1937,210,0 chrXIII 363595 . T C 1567 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.59;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1600,180,0 chrXIII 363616 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.24;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1860,201,0 chrXIII 363820 . A G 1339 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.1371;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.13;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1372,162,0 chrXIII 364548 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8759;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1635,180,0 chrXIII 365100 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.41;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1584,177,0 chrXIII 365131 . A G 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=63;Dels=0.00;FS=3.310;HaplotypeScore=6.0699;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.462;QD=19.19;ReadPosRankSum=1.617;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,59:63:99:1242,141,0 chrXIII 365208 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.34;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1356,150,0 chrXIII 365359 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.73;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1419,159,0 chrXIII 365365 . T A 1377 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.12;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1410,153,0 chrXIII 366629 . C G 1512 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1545,171,0 chrXIII 366707 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.437;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=12.0671;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.179;QD=15.61;ReadPosRankSum=1.695;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1500,149,0 chrXIII 366950 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.19;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1520,168,0 chrXIII 367328 . A G 1935 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.76;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1968,216,0 chrXIII 367507 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=14.19;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1622,180,0 chrXIII 367508 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=13.48;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1516,174,0 chrXIII 367608 . G C 2212 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.48;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2245,252,0 chrXIII 367636 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.65;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2098,234,0 chrXIII 367643 . C T 2045 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.45;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2078,225,0 chrXIII 367662 . G A 1848 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.30;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1881,201,0 chrXIII 367703 . C G 1593 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.31;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1626,186,0 chrXIII 367810 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.23;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2056,219,0 chrXIII 367874 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=21.25;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1754,189,0 chrXIII 367889 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=20.44;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1668,183,0 chrXIII 367919 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.85;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2431,264,0 chrXIII 367971 . G T 1794 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.16;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1827,198,0 chrXIII 368034 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.24;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1647,180,0 chrXIII 368090 . T A 1203 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=17.69;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1236,141,0 chrXIII 368124 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.22;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1359,162,0 chrXIII 368625 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.13;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2415,261,0 chrXIII 368928 . A T 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=137;Dels=0.00;FS=3.627;HaplotypeScore=14.5876;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.732;QD=19.65;ReadPosRankSum=1.630;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2725,300,0 chrXIII 369042 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.66;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1451,162,0 chrXIII 369062 . A C 1379 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.64;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1412,159,0 chrXIII 369384 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.46;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1220,141,0 chrXIII 369419 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=7.920;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.618;QD=19.87;ReadPosRankSum=2.359;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1106,129,0 chrXIII 369465 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.10;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,147,0 chrXIII 369534 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.09;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1560,174,0 chrXIII 369610 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.86;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1382,156,0 chrXIII 370224 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.04;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1675,192,0 chrXIII 370246 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.06;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1483,159,0 chrXIII 370398 . A G 1270 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.71;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1303,153,0 chrXIII 370569 . T A 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=6.021;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.322;QD=19.84;ReadPosRankSum=1.687;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1541,165,0 chrXIII 370707 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.41;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1275,147,0 chrXIII 370816 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.34;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1000,108,0 chrXIII 370927 . T A 1910 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.46;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1943,216,0 chrXIII 371047 . A G 1246 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.17;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1279,147,0 chrXIII 371090 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.53;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1669,180,0 chrXIII 371117 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.12;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1361,150,0 chrXIII 371138 . C G 1268 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.45;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1301,147,0 chrXIII 371174 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.02;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1420,150,0 chrXIII 371362 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.96;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1504,162,0 chrXIII 371525 . G A 1227 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.48;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1260,144,0 chrXIII 371527 . A G 1208 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=7.454;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=0.568;QD=19.17;ReadPosRankSum=2.372;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1241,141,0 chrXIII 371533 . G A 1100 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=17.19;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1133,129,0 chrXIII 371651 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.53;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1047,117,0 chrXIII 371667 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=22.42;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1356,144,0 chrXIII 371689 . C T 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.630;QD=18.14;ReadPosRankSum=-1.312;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1230,121,0 chrXIII 371760 . A T 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-1.516;QD=20.91;ReadPosRankSum=1.689;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1706,180,0 chrXIII 371821 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=19.75;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1139,126,0 chrXIII 371845 . A G 699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;MQRankSum=-1.733;QD=17.47;ReadPosRankSum=1.644;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:81:732,81,0 chrXIII 371851 . A T 655 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=15.98;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:688,75,0 chrXIII 371856 . A C 553 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=13.82;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:586,69,0 chrXIII 371874 . A T 401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;MQRankSum=-0.578;QD=14.85;ReadPosRankSum=1.605;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:48:434,48,0 chrXIII 371909 . C G 454 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=17.46;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:57:487,57,0 chrXIII 371910 . T C 458 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=16.96;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:57:491,57,0 chrXIII 371920 . A G 515 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=16.09;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:63:548,63,0 chrXIII 371940 . C T 560 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=16.47;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:69:593,69,0 chrXIII 371941 . T A 638 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=18.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:75:671,75,0 chrXIII 372015 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=23.24;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:96:916,96,0 chrXIII 372089 . C T 972 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=21.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1005,111,0 chrXIII 372090 . T G 909 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=20.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:942,105,0 chrXIII 372103 . G A 180.03 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=2.77;SB=-5.604e+01 GT:AD:DP:GQ:PL 1/1:0,64:65:24:213,24,0 chrXIII 372225 . T G 1404 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=24.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1437,159,0 chrXIII 372297 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;QD=22.74;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1238,147,0 chrXIII 372301 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=23.64;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1215,135,0 chrXIII 372322 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=22.21;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1210,132,0 chrXIII 372343 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.95;MQ0=0;QD=18.62;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1225,132,0 chrXIII 372428 . C A 1975 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=21.47;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2008,213,0 chrXIII 372583 . A G 498 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=9.40;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:60:531,60,0 chrXIII 378680 . T A 722 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=13.13;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:755,81,0 chrXIII 378714 . T C 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;MQRankSum=-1.790;QD=21.13;ReadPosRankSum=2.341;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:99:984,111,0 chrXIII 378748 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=18.25;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:982,108,0 chrXIII 378772 . C G 935 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.98;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:968,108,0 chrXIII 378811 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=18.53;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1330,147,0 chrXIII 378832 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=14.34;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1123,120,0 chrXIII 378833 . C G 1187 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=15.42;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1220,138,0 chrXIII 378957 . C G 2198 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.76;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2231,249,0 chrXIII 378984 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=20.16;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2170,246,0 chrXIII 379154 . T C 2665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.342;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.152;QD=21.32;ReadPosRankSum=1.704;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2698,306,0 chrXIII 379247 . A C 1651 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.75;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1684,192,0 chrXIII 379248 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.57;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1760,192,0 chrXIII 379813 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.02;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1250,135,0 chrXIII 379976 . T A 785 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.69;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:818,90,0 chrXIII 379984 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.63;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:920,96,0 chrXIII 380269 . T A 289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=4.150;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-1.600;QD=11.12;ReadPosRankSum=1.600;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,25:26:36:322,36,0 chrXIII 380333 . G A 1007 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.1322;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.00;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1040,120,0 chrXIII 381369 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3229;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.102;QD=20.86;ReadPosRankSum=1.575;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1869,216,0 chrXIII 381609 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.71;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1176,132,0 chrXIII 381762 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.99;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1957,219,0 chrXIII 382194 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.04;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2004,216,0 chrXIII 382384 . A T 1785 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.51;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,198,0 chrXIII 383159 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.45;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2031,219,0 chrXIII 383224 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.9686;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.73;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,103:108:99:2164,231,0 chrXIII 383374 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.6766;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.42;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2732,300,0 chrXIII 383408 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.54;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2101,231,0 chrXIII 383864 . A T 2079 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.88;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2112,228,0 chrXIII 383911 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=15.61;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1313,150,0 chrXIII 383914 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.89;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1317,141,0 chrXIII 384223 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.60;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2107,234,0 chrXIII 384682 . C G 1976 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.82;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2009,231,0 chrXIII 384946 . G A 2482 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.24;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2515,273,0 chrXIII 385378 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.10;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1517,162,0 chrXIII 385555 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.9286;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.64;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2241,258,0 chrXIII 386518 . A T 1596 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1629,177,0 chrXIII 386920 . A T 869 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.48;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:902,99,0 chrXIII 387028 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.38;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1293,135,0 chrXIII 387573 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.88;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1356,153,0 chrXIII 388416 . T C 1620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.173;QD=20.25;ReadPosRankSum=1.689;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1653,180,0 chrXIII 388450 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.47;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1548,174,0 chrXIII 388539 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=18.61;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1038,117,0 chrXIII 389031 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.52;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2003,219,0 chrXIII 389274 . T A 2935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=150;Dels=0.00;FS=3.507;HaplotypeScore=17.1603;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.164;QD=19.57;ReadPosRankSum=1.662;SB=-1.700e+03 GT:AD:DP:GQ:PL 1/1:1,149:150:99:2968,321,0 chrXIII 390237 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4478;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.885;QD=18.24;ReadPosRankSum=1.706;SB=-1.665e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2495,276,0 chrXIII 390664 . C G 1990 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2023,228,0 chrXIII 391419 . T C 1266 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.62;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1299,144,0 chrXIII 391443 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.92;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1395,156,0 chrXIII 391619 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.85;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1631,183,0 chrXIII 391712 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.70;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1554,174,0 chrXIII 391763 . G A 1549 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.82;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1582,174,0 chrXIII 392000 . A G 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.166;QD=20.32;ReadPosRankSum=1.637;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1516,168,0 chrXIII 392476 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.31;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1539,174,0 chrXIII 392486 . T C 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.966;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.125;QD=15.09;ReadPosRankSum=2.228;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1376,153,0 chrXIII 393096 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1797,198,0 chrXIII 393453 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.40;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2022,225,0 chrXIII 394512 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.4880;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.83;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1415,159,0 chrXIII 394852 . C T 2504 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.77;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2537,273,0 chrXIII 394901 . G C 1557 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=16.56;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1590,186,0 chrXIII 395022 . T C 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.465;QD=23.07;ReadPosRankSum=1.648;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1925,216,0 chrXIII 395237 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.92;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2050,216,0 chrXIII 395714 . T C 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.645;DP=51;Dels=0.00;FS=3.458;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.393;QD=19.71;ReadPosRankSum=1.664;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1038,117,0 chrXIII 395990 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1293,150,0 chrXIII 396068 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.77;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1426,156,0 chrXIII 396104 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.11;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1192,141,0 chrXIII 396107 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.07;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1217,138,0 chrXIII 396173 . G A 930 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.88;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:963,108,0 chrXIII 396266 . T G 824 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=15.85;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:857,93,0 chrXIII 396436 . A T 2108 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.40;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2141,231,0 chrXIII 396483 . T C 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.074;QD=19.81;ReadPosRankSum=2.391;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1677,195,0 chrXIII 396594 . C A 1785 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.1208;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.77;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1818,192,0 chrXIII 396838 . C T 2983 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.4974;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.43;SB=-1.349e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:3016,330,0 chrXIII 397127 . G C 2882 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.8435;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.15;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2915,327,0 chrXIII 397469 . G A 2839 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.18;SB=-1.572e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:2872,330,0 chrXIII 397850 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.56;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2377,267,0 chrXIII 397898 . A G 1873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=2.940;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.394;QD=20.58;ReadPosRankSum=2.342;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1906,213,0 chrXIII 398046 . T C 1015 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.90;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1048,117,0 chrXIII 398067 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.12;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1079,117,0 chrXIII 398240 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.82;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1369,153,0 chrXIII 398295 . A G 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.219;QD=18.46;ReadPosRankSum=1.689;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1528,174,0 chrXIII 398330 . T C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.827;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.987;QD=18.03;ReadPosRankSum=1.688;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1457,168,0 chrXIII 398491 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.13;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1174,129,0 chrXIII 398620 . A C 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=67;Dels=0.00;FS=3.027;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.197;QD=17.76;ReadPosRankSum=2.374;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:2,63:67:99:1223,138,0 chrXIII 398818 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:925,102,0 chrXIII 398994 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.29;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1348,147,0 chrXIII 399177 . A G 1074 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1107,123,0 chrXIII 399408 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=22.90;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1132,120,0 chrXIII 399479 . A C 10.48 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=56.01;MQ0=0;MQRankSum=-0.157;QD=0.19;ReadPosRankSum=-2.405;SB=-5.107e+01 GT:AD:DP:GQ:PL 0/1:53,2:56:15:40,0,15 chrXIII 399709 . A C 2035 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.66;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2068,231,0 chrXIII 400653 . T C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.967;QD=21.62;ReadPosRankSum=1.687;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1698,192,0 chrXIII 400907 . A G 1586 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.73;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1619,180,0 chrXIII 401494 . T G 1716 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.29;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1749,192,0 chrXIII 401933 . C G 1305 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=22.50;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1338,147,0 chrXIII 402092 . G T 1564 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.03;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1597,171,0 chrXIII 402164 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.04;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1686,183,0 chrXIII 402254 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.67;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1420,150,0 chrXIII 402422 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.66;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1574,180,0 chrXIII 402504 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.62;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1611,177,0 chrXIII 402518 . T A 1544 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.59;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1577,168,0 chrXIII 402537 . A G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.453;QD=18.29;ReadPosRankSum=1.679;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1222,135,0 chrXIII 402670 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.37;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1251,135,0 chrXIII 403250 . A G 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=0.369;QD=18.38;ReadPosRankSum=1.562;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1154,132,0 chrXIII 403256 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.39;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1118,126,0 chrXIII 403634 . T A 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.087;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.605;QD=19.68;ReadPosRankSum=1.690;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1647,177,0 chrXIII 403773 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.70;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1327,141,0 chrXIII 403801 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.56;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1143,126,0 chrXIII 404087 . C T 699 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.47;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:81:732,81,0 chrXIII 404319 . G A 2398 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=13.7798;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.59;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2431,270,0 chrXIII 404584 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.50;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1925,216,0 chrXIII 404983 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.36;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1998,225,0 chrXIII 405305 . A G 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.223;QD=19.28;ReadPosRankSum=1.681;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1363,153,0 chrXIII 405638 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.18;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1342,150,0 chrXIII 405726 . A G 1103 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1136,129,0 chrXIII 406116 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:759,84,0 chrXIII 406222 . A T 856 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.38;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:889,99,0 chrXIII 406240 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.72;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:1032,111,0 chrXIII 406355 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.99;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1572,177,0 chrXIII 406917 . G C 2224 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.38;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2257,258,0 chrXIII 407557 . T C 1378 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2100;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=15.31;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1411,159,0 chrXIII 407898 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.94;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1570,174,0 chrXIII 408131 . C T 2200 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0261;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.36;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2233,246,0 chrXIII 409384 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.52;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1302,147,0 chrXIII 409606 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;DP=20;Dels=0.00;FS=35.997;HaplotypeScore=3.3576;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=0;MQRankSum=-2.445;QD=2.70;ReadPosRankSum=0.634;SB=0.507 GT:AD:DP:GQ:PL 0/1:11,8:20:84:84,0,239 chrXIII 409609 . C T 56.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;DP=18;Dels=0.00;FS=42.889;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=-2.196;QD=3.11;ReadPosRankSum=-1.317;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:10,8:18:86:86,0,222 chrXIII 409643 . A G 402 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.14;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:48:435,48,0 chrXIII 409650 . C T 389 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.45;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:422,45,0 chrXIII 409788 . G A 1041 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1074,114,0 chrXIII 409894 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.33;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1239,141,0 chrXIII 410308 . A G 3176 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=13.3897;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.46;SB=-1.845e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3209,354,0 chrXIII 410365 . A G 4303.01 PASS AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.77;SB=-2.276e+03 GT:AD:DP:GQ:PL 1/1:1,184:189:99:4303,468,0 chrXIII 410451 . A G 2953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=6.746;HaplotypeScore=3.5075;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.378;QD=18.93;ReadPosRankSum=1.665;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2986,333,0 chrXIII 410660 . C T 5511.01 PASS AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.03;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:0,262:262:99:5511,636,0 chrXIII 411146 . T C 2435 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.48;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2468,288,0 chrXIII 411358 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.61;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1528,165,0 chrXIII 411389 . T C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;DP=57;Dels=0.00;FS=6.163;HaplotypeScore=119.1188;MLEAC=1;MLEAF=0.500;MQ=51.86;MQ0=0;MQRankSum=-0.290;QD=0.35;ReadPosRankSum=-4.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,7:57:50:50,0,85 chrXIII 411958 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.19;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1530,168,0 chrXIII 411991 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.72;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1877,204,0 chrXIII 412177 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.68;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1470,162,0 chrXIII 412378 . T A 1837 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.82;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1870,198,0 chrXIII 412463 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.41;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1508,165,0 chrXIII 412625 . A G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=7.739;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.595;QD=24.57;ReadPosRankSum=1.698;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2539,285,0 chrXIII 412783 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7562;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.59;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1835,207,0 chrXIII 412878 . C G 1760 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=16.30;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,104:108:99:1793,201,0 chrXIII 412883 . A G 1762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.980;QD=16.62;ReadPosRankSum=1.699;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1795,198,0 chrXIII 413447 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.34;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1569,171,0 chrXIII 413965 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.24;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1799,192,0 chrXIII 414299 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.71;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1305,141,0 chrXIII 414344 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.78;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1072,114,0 chrXIII 414447 . C T 579 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.03;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:612,66,0 chrXIII 414564 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1263,141,0 chrXIII 415535 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.71;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1509,159,0 chrXIII 415679 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.19;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1958,210,0 chrXIII 415772 . T G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.165;QD=21.89;ReadPosRankSum=1.691;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1872,213,0 chrXIII 416114 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.784;QD=20.53;ReadPosRankSum=1.601;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2230,255,0 chrXIII 416124 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.34;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2338,249,0 chrXIII 416192 . C A 2015 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.5956;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.37;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2048,222,0 chrXIII 416274 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=7.057;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-1.522;QD=16.78;ReadPosRankSum=2.392;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1459,165,0 chrXIII 416283 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.71;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1414,153,0 chrXIII 416354 . C T 898 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4990;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=11.66;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:931,102,0 chrXIII 416781 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.85;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1868,201,0 chrXIII 416929 . C T 736 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:769,81,0 chrXIII 417054 . C A 1220 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1253,135,0 chrXIII 417062 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.65;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1208,135,0 chrXIII 417126 . A C 1348 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.42;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1381,153,0 chrXIII 417249 . C T 1119 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.84;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1152,126,0 chrXIII 417450 . G A 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.075;QD=21.11;ReadPosRankSum=1.657;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1025,114,0 chrXIII 417524 . C T 1586 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1619,171,0 chrXIII 418982 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.84;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1481,165,0 chrXIII 419424 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1087,117,0 chrXIII 419558 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.55;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1492,162,0 chrXIII 419667 . G A 2287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=93;Dels=0.00;FS=4.276;HaplotypeScore=9.1952;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.580;QD=24.59;ReadPosRankSum=1.504;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2320,225,0 chrXIII 419718 . C A 1692 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.86;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1725,186,0 chrXIII 419876 . A G 1421 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1816;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.74;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1454,162,0 chrXIII 419976 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.29;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1538,165,0 chrXIII 420051 . G C 1378 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.41;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1411,156,0 chrXIII 420098 . A T 941 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.45;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:974,102,0 chrXIII 420310 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.76;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1041,114,0 chrXIII 420384 . T A 488 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=6.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=-1.050;QD=9.21;ReadPosRankSum=2.310;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:66:521,66,0 chrXIII 420385 . T A 305 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=5.87;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:42:338,42,0 chrXIII 420386 . C T 298 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=5.62;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:42:331,42,0 chrXIII 420528 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.05;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.26;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2022,216,0 chrXIII 420568 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.52;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1384,153,0 chrXIII 420689 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=18.95;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:81:753,81,0 chrXIII 420702 . G C 655 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=16.37;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:78:688,78,0 chrXIII 420768 . A G 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=-0.346;QD=19.31;ReadPosRankSum=1.572;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1288,144,0 chrXIII 420786 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=64.1674;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=18.06;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1424,153,0 chrXIII 420856 . G T 1598 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.37;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1631,183,0 chrXIII 420892 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.9314;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.27;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1777,195,0 chrXIII 421102 . A T 406 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;MQRankSum=-1.561;QD=20.30;ReadPosRankSum=1.561;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:1,19:20:45:439,45,0 chrXIII 421535 . G T 1583 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.63;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1616,180,0 chrXIII 421708 . A C 1496 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.22;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1529,174,0 chrXIII 422449 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0272;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.36;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2068,228,0 chrXIII 422548 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.00;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1574,177,0 chrXIII 422714 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.91;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1983,222,0 chrXIII 422731 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1942;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.97;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1750,198,0 chrXIII 423169 . A G 2123 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.89;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2156,240,0 chrXIII 423520 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.88;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2053,231,0 chrXIII 423541 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.20;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2376,261,0 chrXIII 423603 . A T 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.005;QD=20.58;ReadPosRankSum=1.663;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2091,228,0 chrXIII 423901 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7542;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.09;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1227,138,0 chrXIII 424405 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.01;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2302,258,0 chrXIII 424537 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;DP=84;Dels=0.00;FS=18.415;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.735;QD=19.90;ReadPosRankSum=3.715;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:5,74:84:99:1705,186,0 chrXIII 424897 . T G 896 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=14.22;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:929,108,0 chrXIII 425033 . G T 1691 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=111;Dels=0.05;FS=4.125;HaplotypeScore=16.3393;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.686;QD=15.23;ReadPosRankSum=1.503;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1724,183,0 chrXIII 425034 . A T 1699 SnpCluster AC=2;AF=1.00;AN=2;DP=111;Dels=0.04;FS=0.000;HaplotypeScore=16.3393;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.31;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1732,183,0 chrXIII 425035 . C T 1671 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.03;FS=0.000;HaplotypeScore=17.3327;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=14.53;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1704,186,0 chrXIII 425123 . A T 2360 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.34;SB=-1.464e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2393,258,0 chrXIII 425138 . A G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.565;QD=20.24;ReadPosRankSum=1.694;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1895,210,0 chrXIII 425898 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.88;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1453,162,0 chrXIII 426159 . A C 1476 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.04;FS=0.000;HaplotypeScore=13.5520;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.17;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1509,168,0 chrXIII 426219 . T A 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.054;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=49.9448;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.697;QD=13.81;ReadPosRankSum=2.307;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1041,117,0 chrXIII 426590 . T C 1010 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.44;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1043,117,0 chrXIII 426934 . T C 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.417;QD=21.83;ReadPosRankSum=1.701;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2434,279,0 chrXIII 426949 . C A 2553 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.59;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2586,288,0 chrXIII 427123 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3474;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1888,204,0 chrXIII 427279 . T C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=116;Dels=0.00;FS=3.886;HaplotypeScore=8.0416;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.310;QD=18.14;ReadPosRankSum=1.672;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2137,237,0 chrXIII 427327 . A G 2817 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8816;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.16;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2850,315,0 chrXIII 428041 . T C 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.4143;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.390;QD=20.51;ReadPosRankSum=1.559;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1694,192,0 chrXIII 428830 . A G 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.456;QD=13.57;ReadPosRankSum=1.368;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:96:820,96,0 chrXIII 428833 . A T 807 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=12.81;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:93:840,93,0 chrXIII 429465 . G C 2479 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.33;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2512,276,0 chrXIII 429559 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.50;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2179,237,0 chrXIII 429941 . A T 3283.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.9200;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.60;SB=-1.766e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3283,357,0 chrXIII 430167 . C A 1714 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.42;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1747,186,0 chrXIII 430438 . A G 2360 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.06;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2393,267,0 chrXIII 430487 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.36;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2110,237,0 chrXIII 430685 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.33;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1573,174,0 chrXIII 430694 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.37;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1683,189,0 chrXIII 430800 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1610,177,0 chrXIII 430847 . T C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.651;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-1.404;QD=17.70;ReadPosRankSum=1.685;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1343,147,0 chrXIII 430856 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.73;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1550,165,0 chrXIII 430895 . A T 1629 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.63;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1662,177,0 chrXIII 430948 . G C 1522 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.03;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1555,174,0 chrXIII 431202 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.14;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1450,156,0 chrXIII 431220 . T G 1309 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.24;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1342,147,0 chrXIII 431689 . C T 1067 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.21;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1100,120,0 chrXIII 431692 . A C 1055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=62;Dels=0.00;FS=4.091;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.851;QD=17.02;ReadPosRankSum=1.674;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,58:62:99:1088,120,0 chrXIII 431765 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.56;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1164,129,0 chrXIII 431890 . A G 782 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.14;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:815,93,0 chrXIII 432019 . T A 997 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=16.90;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1030,111,0 chrXIII 432049 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.08;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:987,111,0 chrXIII 432132 . A T 830 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.76;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:863,93,0 chrXIII 432231 . G A 607 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.56;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:69:640,69,0 chrXIII 432613 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.74;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1485,162,0 chrXIII 432625 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.21;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1765,189,0 chrXIII 432667 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.56;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1637,177,0 chrXIII 433052 . T A 2235 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=22.35;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2268,255,0 chrXIII 433082 . G A 2529 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.3169;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=23.20;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,104:109:99:2562,270,0 chrXIII 433201 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.19;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2252,246,0 chrXIII 433223 . A G 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.523;QD=21.10;ReadPosRankSum=1.690;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1784,204,0 chrXIII 433274 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.93;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,168,0 chrXIII 433422 . A G 1122 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=14.20;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1155,129,0 chrXIII 433519 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1985;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.88;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2351,261,0 chrXIII 433544 . G T 2493 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=24.20;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2526,267,0 chrXIII 433748 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=21.85;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1650,177,0 chrXIII 433952 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.21;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:945,105,0 chrXIII 434151 . G A 2439 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.15;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2472,264,0 chrXIII 434234 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.70;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1872,201,0 chrXIII 434450 . C T 1190 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=16.30;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1223,138,0 chrXIII 434538 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0722;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.08;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1255,135,0 chrXIII 434776 . G A 3339.01 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.11;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3339,357,0 chrXIII 435282 . C A 1178 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=12.95;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1211,129,0 chrXIII 436033 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.15;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1693,180,0 chrXIII 436081 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.07;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:960,105,0 chrXIII 436089 . A C 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=44;Dels=0.00;FS=3.103;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.310;QD=20.07;ReadPosRankSum=2.338;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:2,42:44:99:916,105,0 chrXIII 436140 . C T 884 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.64;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:917,99,0 chrXIII 436595 . A C 1373 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.79;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1406,153,0 chrXIII 436611 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=22.62;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1639,177,0 chrXIII 436738 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.35;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1835,201,0 chrXIII 436769 . G A 1546 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.16;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1579,165,0 chrXIII 436847 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.45;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1818,201,0 chrXIII 437005 . C T 1944 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.64;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1977,210,0 chrXIII 437011 . G A 1552 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.44;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1585,180,0 chrXIII 437012 . A G 1593 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.52;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1626,183,0 chrXIII 437041 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.89;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1607,180,0 chrXIII 437167 . T C 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.205;QD=19.32;ReadPosRankSum=1.694;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,91:95:99:1868,207,0 chrXIII 437323 . T C 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=64;Dels=0.00;FS=3.063;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.574;QD=20.77;ReadPosRankSum=2.291;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,60:64:99:1362,150,0 chrXIII 437463 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=13.97;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:927,105,0 chrXIII 437922 . T C 1280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.229;QD=20.65;ReadPosRankSum=1.621;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1313,150,0 chrXIII 438448 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.87;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1765,204,0 chrXIII 438469 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.19;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1664,180,0 chrXIII 438490 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.23;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1894,201,0 chrXIII 438807 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.62;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2088,219,0 chrXIII 439294 . A T 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.642;QD=13.34;ReadPosRankSum=1.597;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1087,120,0 chrXIII 439316 . G A 1079 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=15.64;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1112,120,0 chrXIII 439396 . T C 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-2.162;QD=20.78;ReadPosRankSum=2.368;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1280,144,0 chrXIII 439726 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.72;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1591,177,0 chrXIII 440197 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=23.90;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2088,231,0 chrXIII 440349 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.39;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1717,192,0 chrXIII 440382 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.78;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1235,132,0 chrXIII 440388 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.61;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1168,126,0 chrXIII 440533 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=9.545;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=-1.494;QD=16.84;ReadPosRankSum=2.211;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1077,120,0 chrXIII 440546 . A G 865 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.32;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:898,102,0 chrXIII 440555 . T G 925 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=15.68;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:958,105,0 chrXIII 440791 . T C 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.385;QD=16.87;ReadPosRankSum=1.540;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:944,105,0 chrXIII 440792 . T C 923 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.09;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:956,105,0 chrXIII 441031 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=12.57;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:938,102,0 chrXIII 441110 . T G 1244 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.28;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1277,144,0 chrXIII 441184 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.09;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1172,126,0 chrXIII 441278 . T C 767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=4.658;HaplotypeScore=6.0337;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.730;QD=20.18;ReadPosRankSum=1.550;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:90:800,90,0 chrXIII 441637 . A T 864 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.57;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:897,96,0 chrXIII 441655 . A T 786 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.15;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:819,90,0 chrXIII 442338 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.75;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1142,123,0 chrXIII 442419 . A T 786 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.56;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:819,87,0 chrXIII 442504 . G A 1538 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.62;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1571,165,0 chrXIII 443477 . T C 2114 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.49;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2147,240,0 chrXIII 443954 . G C 2622 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.81;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2655,297,0 chrXIII 444110 . G A 2658 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.6712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2691,285,0 chrXIII 444158 . T C 2068 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2101,240,0 chrXIII 444227 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.06;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1697,180,0 chrXIII 444299 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.46;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1464,156,0 chrXIII 444383 . G A 2085 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.2677;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.95;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2118,228,0 chrXIII 444677 . A G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.070;QD=19.71;ReadPosRankSum=1.693;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1787,207,0 chrXIII 445016 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.41;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1489,168,0 chrXIII 445293 . C T 948 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.17;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:981,111,0 chrXIII 446239 . A T 1985 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.89;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2018,216,0 chrXIII 446260 . T C 1979 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.67;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2012,228,0 chrXIII 446284 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=15.92;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1720,192,0 chrXIII 446740 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.24;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1550,177,0 chrXIII 446935 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.00;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1153,126,0 chrXIII 447487 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.72;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1256,138,0 chrXIII 447488 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.73;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1221,135,0 chrXIII 448075 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=16.64;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1497,168,0 chrXIII 448333 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.37;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1493,168,0 chrXIII 448334 . A G 1481 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.866;QD=16.10;ReadPosRankSum=1.130;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1514,171,0 chrXIII 448374 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=16.63;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1580,174,0 chrXIII 448496 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.30;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1735,195,0 chrXIII 448516 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=21.67;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1918,207,0 chrXIII 448554 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.75;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1850,201,0 chrXIII 448761 . A C 1784 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2102;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.82;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1817,210,0 chrXIII 448794 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0339;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.07;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1739,189,0 chrXIII 448808 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.01;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1794,195,0 chrXIII 448852 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=18.79;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1555,168,0 chrXIII 448865 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.2757;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=17.24;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1533,171,0 chrXIII 448906 . G A 1459 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=15.52;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1492,165,0 chrXIII 448943 . A T 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=14.5482;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-1.501;QD=16.92;ReadPosRankSum=1.694;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1573,177,0 chrXIII 449090 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=21.04;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1611,177,0 chrXIII 449092 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=21.85;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1672,177,0 chrXIII 449107 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=17.53;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1383,153,0 chrXIII 449152 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=16.55;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1572,168,0 chrXIII 449173 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=16.66;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1682,180,0 chrXIII 449175 . T C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;MQRankSum=-0.381;QD=15.72;ReadPosRankSum=1.697;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1605,186,0 chrXIII 449808 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.72;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1760,189,0 chrXIII 449969 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.91;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2465,261,0 chrXIII 450012 . C T 4069.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.51;SB=-1.966e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:4069,432,0 chrXIII 450172 . C A 1711 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.94;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1744,195,0 chrXIII 450562 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1641,180,0 chrXIII 451199 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=16.46;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1498,174,0 chrXIII 451252 . T G 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=97;Dels=0.00;FS=3.240;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.054;QD=15.56;ReadPosRankSum=1.696;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1542,174,0 chrXIII 451375 . A C 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.577;QD=13.56;ReadPosRankSum=1.672;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:90:806,90,0 chrXIII 451494 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.16;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1106,123,0 chrXIII 451502 . T C 1265 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.17;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1298,147,0 chrXIII 451977 . T C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.757;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.337;QD=20.69;ReadPosRankSum=1.702;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2392,270,0 chrXIII 452077 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=13.7018;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.03;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1863,198,0 chrXIII 452181 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.96;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1815,192,0 chrXIII 453366 . T G 1522 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.56;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1555,171,0 chrXIII 453387 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=17.01;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1785,192,0 chrXIII 453503 . T G 1811 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.82;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1844,207,0 chrXIII 453513 . A C 1911 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.77;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1944,216,0 chrXIII 453522 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.318;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9779;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.393;QD=20.60;ReadPosRankSum=1.582;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1928,193,0 chrXIII 453539 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.87;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2114,228,0 chrXIII 453875 . T A 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.468;HaplotypeScore=5.0198;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.501;QD=20.77;ReadPosRankSum=1.675;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1279,116,0 chrXIII 453906 . T A 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.407;QD=22.42;ReadPosRankSum=1.624;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1468,156,0 chrXIII 454515 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.20;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1234,138,0 chrXIII 454866 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.336;QD=21.15;ReadPosRankSum=1.681;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1471,165,0 chrXIII 454966 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=12.5084;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.70;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1767,195,0 chrXIII 455073 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.2266;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.54;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1886,213,0 chrXIII 455166 . T C 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=2.699;HaplotypeScore=10.2256;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.580;QD=21.18;ReadPosRankSum=2.402;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2236,249,0 chrXIII 455319 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1745,201,0 chrXIII 455659 . C A 2363 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.48;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2396,270,0 chrXIII 456189 . A T 1640 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.43;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1673,180,0 chrXIII 456415 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.39;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2031,219,0 chrXIII 456517 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.305;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5857;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.400;QD=19.39;ReadPosRankSum=0.973;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1468,162,0 chrXIII 456535 . A T 1574 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.92;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1607,171,0 chrXIII 456718 . T G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=3.7603;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.157;QD=22.97;ReadPosRankSum=1.687;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1802,195,0 chrXIII 456970 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.40;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1444,159,0 chrXIII 457247 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1142,120,0 chrXIII 457276 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.09;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1326,144,0 chrXIII 457614 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.00;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1503,159,0 chrXIII 457932 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.64;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1329,144,0 chrXIII 458051 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.09;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2264,258,0 chrXIII 458330 . A G 2773 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4814;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.39;SB=-1.596e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2806,318,0 chrXIII 458366 . C A 2945 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.17;SB=-1.644e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2978,318,0 chrXIII 458370 . C T 2659 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=17.49;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,147:152:99:2692,297,0 chrXIII 458464 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.9030;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.00;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2783,312,0 chrXIII 458513 . T G 2030 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.56;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2063,228,0 chrXIII 459200 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.71;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1255,138,0 chrXIII 459340 . T C 1762 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.74;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1795,198,0 chrXIII 459498 . A G 874 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.86;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:907,102,0 chrXIII 459508 . T C 697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.260;QD=17.00;ReadPosRankSum=1.646;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:730,81,0 chrXIII 459670 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.31;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1455,168,0 chrXIII 459697 . G A 1717 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.01;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1750,186,0 chrXIII 459995 . A C 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0506;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.639;QD=19.65;ReadPosRankSum=1.404;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1507,168,0 chrXIII 460285 . A G 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.542;QD=20.45;ReadPosRankSum=1.694;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1894,219,0 chrXIII 461207 . A T 1426 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.08;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1459,156,0 chrXIII 461530 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1424,153,0 chrXIII 461653 . A G 1095 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.56;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1128,123,0 chrXIII 461659 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.52;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1165,126,0 chrXIII 462232 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1873,198,0 chrXIII 462409 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.90;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2002,222,0 chrXIII 462535 . G C 1602 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.08;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1635,180,0 chrXIII 462716 . G A 491 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=7.79;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:57:524,57,0 chrXIII 462773 . A T 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.425;QD=22.42;ReadPosRankSum=1.644;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1827,198,0 chrXIII 462976 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;MQRankSum=-0.708;QD=21.80;ReadPosRankSum=1.635;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1581,186,0 chrXIII 463091 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=21.02;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1147,123,0 chrXIII 463170 . A C 1483 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=21.81;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1516,171,0 chrXIII 463171 . C G 1448 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=21.29;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1481,168,0 chrXIII 463232 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=59.4148;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=0;QD=18.77;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1253,132,0 chrXIII 463247 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=13.03;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:997,111,0 chrXIII 463261 . A C 1031 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=15.16;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1064,117,0 chrXIII 463264 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.63;MQ0=0;QD=14.28;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1104,117,0 chrXIII 463330 . T C 406 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.06;MQ0=0;QD=9.44;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:48:439,48,0 chrXIII 463337 . A T 503 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.04;MQ0=0;QD=15.72;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:536,60,0 chrXIII 463367 . C A 190.03 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=11.18;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:24:223,24,0 chrXIII 463374 . C T 189.03 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=4.9584;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=0;QD=12.60;SB=-5.902e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:24:222,24,0 chrXIII 463395 . C G 246 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=0;QD=10.25;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:33:279,33,0 chrXIII 463407 . G A 429 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=0;QD=11.92;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:48:462,48,0 chrXIII 463410 . G A 450 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=11.84;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:51:483,51,0 chrXIII 463412 . G A 487 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=12.17;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:57:520,57,0 chrXIII 463414 . G A 526 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=11.69;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:63:559,63,0 chrXIII 463419 . C T 592 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=8.84;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:69:625,69,0 chrXIII 463709 . A T 942 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=25.46;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:975,102,0 chrXIII 463745 . C T 817 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=19.00;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:90:850,90,0 chrXIII 464030 . A T 1479 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1512,162,0 chrXIII 464859 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.60;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1638,183,0 chrXIII 465031 . G A 1443 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.04;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1476,156,0 chrXIII 465036 . C A 1296 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=17.75;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1329,141,0 chrXIII 465530 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.35;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1134,123,0 chrXIII 465545 . G A 1113 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=17.39;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1146,123,0 chrXIII 465549 . T C 1151 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.44;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1184,132,0 chrXIII 465869 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.94;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:724,78,0 chrXIII 465899 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.44;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:762,81,0 chrXIII 465931 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.80;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1014,108,0 chrXIII 466377 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.92;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2063,222,0 chrXIII 466416 . C A 2289 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.08;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2322,252,0 chrXIII 466863 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.12;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1884,198,0 chrXIII 467764 . G A 2134 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6430;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.23;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2167,240,0 chrXIII 467817 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.0062;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.06;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2129,228,0 chrXIII 467994 . C T 693 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:726,81,0 chrXIII 468051 . C T 680 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=15.11;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:713,78,0 chrXIII 468156 . T C 982 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=15.59;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1015,120,0 chrXIII 468328 . G A 888 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.47;MQ0=0;QD=19.30;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,43:46:99:921,99,0 chrXIII 468499 . A T 575 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.12;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:66:608,66,0 chrXIII 468937 . T C 1237 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.121;DP=60;Dels=0.00;FS=2.698;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.803;QD=20.62;ReadPosRankSum=2.368;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1270,144,0 chrXIII 469276 . A G 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=2.908;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.597;QD=18.63;ReadPosRankSum=2.244;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1151,132,0 chrXIII 469297 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.50;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1437,168,0 chrXIII 469459 . A G 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=67;Dels=0.00;FS=10.078;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.462;QD=21.03;ReadPosRankSum=2.832;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:3,63:67:99:1442,159,0 chrXIII 469503 . T G 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.710;QD=17.11;ReadPosRankSum=1.675;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1077,117,0 chrXIII 469513 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.95;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1128,120,0 chrXIII 470589 . A G 2387 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.5429;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.90;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2420,270,0 chrXIII 470697 . A G 2126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.9485;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.495;QD=18.49;ReadPosRankSum=1.639;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,111:115:99:2159,246,0 chrXIII 470916 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1578,180,0 chrXIII 471159 . T C 1277 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1310,153,0 chrXIII 473006 . A G 249 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.79;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:282,33,0 chrXIII 473172 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=7.833;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.267;QD=16.69;ReadPosRankSum=2.159;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:884,102,0 chrXIII 473320 . A G 1152 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.51;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1185,135,0 chrXIII 473407 . C G 628 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.97;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:661,75,0 chrXIII 473450 . A G 832 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:865,99,0 chrXIII 473594 . T A 1770 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.88;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1803,201,0 chrXIII 473597 . A G 1713 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.727;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-1.092;QD=18.42;ReadPosRankSum=1.694;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1746,204,0 chrXIII 473599 . T G 1765 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.627;QD=18.78;ReadPosRankSum=1.658;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1798,201,0 chrXIII 473747 . T A 1515 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.68;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1548,174,0 chrXIII 474275 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.03;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1535,162,0 chrXIII 474350 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7722;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1621,171,0 chrXIII 474399 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1831,207,0 chrXIII 474682 . G A 954 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.30;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:987,105,0 chrXIII 474721 . G T 1331 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.57;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1364,147,0 chrXIII 474893 . G A 1057 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.14;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1090,126,0 chrXIII 474938 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.99;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1372,153,0 chrXIII 475024 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=15.3289;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.91;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1215,129,0 chrXIII 475108 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.33;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1753,189,0 chrXIII 475126 . G A 1343 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.18;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1376,147,0 chrXIII 475202 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.66;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1302,144,0 chrXIII 475480 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.25;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1066,117,0 chrXIII 475855 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1498,165,0 chrXIII 476482 . A G 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.400;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.685;QD=17.97;ReadPosRankSum=1.685;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,72:77:99:1417,159,0 chrXIII 476641 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.11;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:2621,279,0 chrXIII 476812 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2030,225,0 chrXIII 476980 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.76;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2004,219,0 chrXIII 476994 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-0.742;QD=19.40;ReadPosRankSum=1.633;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2089,234,0 chrXIII 477051 . T C 2020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=110;Dels=0.00;FS=7.440;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.145;QD=18.36;ReadPosRankSum=2.405;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2053,240,0 chrXIII 477610 . A G 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=15.8196;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.091;QD=16.90;ReadPosRankSum=1.687;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1351,153,0 chrXIII 477847 . C G 2354 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.08;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2387,267,0 chrXIII 478087 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.43;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1452,159,0 chrXIII 478297 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.27;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:958,108,0 chrXIII 478638 . T G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.433;QD=20.29;ReadPosRankSum=1.678;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1352,153,0 chrXIII 478673 . A G 1710 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8423;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.11;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1743,192,0 chrXIII 479146 . T C 2590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.760;QD=22.72;ReadPosRankSum=1.702;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2623,291,0 chrXIII 479249 . C T 2847 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5014;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.90;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2880,309,0 chrXIII 479746 . G C 2052 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.16;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2085,240,0 chrXIII 480327 . T C 394 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=15.15;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,25:26:48:427,48,0 chrXIII 480404 . A G 970 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;MQRankSum=-1.737;QD=17.96;ReadPosRankSum=1.737;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1003,111,0 chrXIII 480495 . C G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=7.93;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrXIII 480496 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrXIII 480545 . G A 395 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=26.33;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:428,45,0 chrXIII 480549 . G A 393 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=26.20;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:426,45,0 chrXIII 480601 . C T 699 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=19.97;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:78:732,78,0 chrXIII 480711 . C A 78.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=19.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:111,12,0 chrXIII 481412 . A T 2499 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.80;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2532,279,0 chrXIII 481511 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=21.93;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2709,291,0 chrXIII 481534 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=21.10;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2185,234,0 chrXIII 481556 . G C 1757 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=17.75;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1790,198,0 chrXIII 481610 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=19.50;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1320,144,0 chrXIII 481632 . T A 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=77;Dels=0.00;FS=5.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-2.123;QD=17.48;ReadPosRankSum=3.202;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:4,73:77:99:1379,153,0 chrXIII 481647 . G T 1676 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.19;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1709,189,0 chrXIII 481735 . C T 1968 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.06;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2001,222,0 chrXIII 481834 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.38;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2107,222,0 chrXIII 482942 . A G 1956 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.5802;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.81;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1989,219,0 chrXIII 484290 . C G 1936 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.44;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1969,231,0 chrXIII 485157 . T G 1359 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1392,162,0 chrXIII 485619 . T C 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=3.729;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.910;QD=20.92;ReadPosRankSum=1.674;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1288,144,0 chrXIII 485712 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=15.11;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1363,153,0 chrXIII 485832 . T C 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.946;DP=88;Dels=0.00;FS=6.909;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.462;QD=19.73;ReadPosRankSum=1.722;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1769,182,0 chrXIII 486339 . A G 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=9.461;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.425;QD=23.44;ReadPosRankSum=1.667;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1299,150,0 chrXIII 486464 . T C 1075 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=3.090;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.287;QD=19.20;ReadPosRankSum=2.362;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1108,126,0 chrXIII 486465 . C T 1092 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.50;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1125,126,0 chrXIII 487393 . T C 1821 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7202;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.21;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1854,207,0 chrXIII 487573 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6196;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.41;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1890,201,0 chrXIII 487606 . A G 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.04;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1556,174,0 chrXIII 487633 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.87;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1682,186,0 chrXIII 487795 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.599;QD=18.59;ReadPosRankSum=1.688;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1483,168,0 chrXIII 487831 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.92;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1916,210,0 chrXIII 490194 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.58;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1325,147,0 chrXIII 490598 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.36;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1528,171,0 chrXIII 490916 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1434,159,0 chrXIII 490970 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1378,153,0 chrXIII 491108 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.31;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1211,141,0 chrXIII 491129 . T C 1131 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.85;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1164,129,0 chrXIII 491201 . A T 1600 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.62;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1633,174,0 chrXIII 491444 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.73;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1163,123,0 chrXIII 491864 . T C 1000 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1033,114,0 chrXIII 491919 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.98;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1000,105,0 chrXIII 491997 . G T 1600 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.33;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1633,171,0 chrXIII 492512 . T C 781 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:93:814,93,0 chrXIII 492749 . G T 2419 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.79;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2452,264,0 chrXIII 492986 . A G 2090 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.55;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2123,249,0 chrXIII 496601 . T C 2039 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7392;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.44;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2072,234,0 chrXIII 496943 . C A 1285 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3017;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=14.94;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1318,141,0 chrXIII 496955 . A T 1462 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3409;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=17.00;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1495,159,0 chrXIII 497568 . G T 1359 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.41;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1392,150,0 chrXIII 500788 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.06;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1337,144,0 chrXIII 501697 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.43;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1913,210,0 chrXIII 505362 . G C 1859 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.37;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1892,210,0 chrXIII 505398 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.91;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2118,252,0 chrXIII 508047 . G T 324.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;DP=62;Dels=0.00;FS=125.927;HaplotypeScore=18.4910;MLEAC=1;MLEAF=0.500;MQ=54.56;MQ0=0;MQRankSum=-1.350;QD=5.23;ReadPosRankSum=-3.502;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,29:62:99:354,0,373 chrXIII 508389 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.48;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1966,213,0 chrXIII 508768 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.22;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1878,207,0 chrXIII 508918 . T G 1532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.927;QD=17.81;ReadPosRankSum=1.611;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1565,180,0 chrXIII 508933 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8766;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.30;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1662,186,0 chrXIII 509304 . A G 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.379;QD=23.08;ReadPosRankSum=1.697;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2295,252,0 chrXIII 510373 . A T 1574 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.22;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1607,171,0 chrXIII 511205 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.7470;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.99;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:0,123:129:99:2483,270,0 chrXIII 511256 . A G 1955 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=95.9464;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.98;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1988,219,0 chrXIII 511796 . T C 202.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:235,27,0 chrXIII 511826 . G A 321 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=16.05;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,19:20:42:354,42,0 chrXIII 511953 . G A 553 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.12;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:25:63:586,63,0 chrXIII 512151 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.10;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:877,99,0 chrXIII 512189 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=20.27;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:783,87,0 chrXIII 512216 . G A 614 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=16.16;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:647,75,0 chrXIII 512219 . T C 629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=3.099;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;MQRankSum=-1.242;QD=16.13;ReadPosRankSum=2.324;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:78:662,78,0 chrXIII 512232 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=16.72;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:702,81,0 chrXIII 512343 . G T 1301 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=16.26;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1334,141,0 chrXIII 512344 . G T 1303 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.09;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1336,141,0 chrXIII 512447 . A T 2580 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=25.29;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2613,276,0 chrXIII 512520 . A G 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.379;QD=17.67;ReadPosRankSum=1.678;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1164,138,0 chrXIII 512540 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=16.24;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1056,117,0 chrXIII 512555 . A C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=88.8449;MLEAC=2;MLEAF=1.00;MQ=33.63;MQ0=0;MQRankSum=-0.718;QD=0.30;ReadPosRankSum=-4.879;SB=-3.676e+01 GT:AD:DP:GQ:PL 1/1:44,14:59:6:49,6,0 chrXIII 512558 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=39.6760;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=10.89;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:643,72,0 chrXIII 512725 . T C 2289 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.66;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2322,258,0 chrXIII 512918 . C A 1309 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=17.00;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1342,147,0 chrXIII 512919 . C G 1306 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=17.18;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1339,147,0 chrXIII 512964 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=15.86;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1571,177,0 chrXIII 513049 . C T 1551 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.16;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1584,168,0 chrXIII 513778 . C G 1106 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.40;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1139,129,0 chrXIII 514004 . T C 863 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=16.28;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:896,102,0 chrXIII 514187 . G A 849 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.58;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:882,93,0 chrXIII 514325 . A C 462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=3.163;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.016;QD=15.93;ReadPosRankSum=1.614;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:57:495,57,0 chrXIII 514342 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.92;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:714,78,0 chrXIII 514631 . A T 1758 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.04;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.97;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1791,198,0 chrXIII 515212 . T G 1775 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2344;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=19.72;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1808,201,0 chrXIII 515220 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3225;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=20.81;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1864,204,0 chrXIII 515265 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.99;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1544,171,0 chrXIII 515325 . T C 1829 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.9440;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.77;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1862,210,0 chrXIII 515375 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.24;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1857,201,0 chrXIII 515790 . G C 1310 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.70;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1343,153,0 chrXIII 516109 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.67;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1418,156,0 chrXIII 516134 . A G 1312 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.74;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1345,150,0 chrXIII 516303 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.56;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1349,150,0 chrXIII 516489 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.19;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1813,192,0 chrXIII 517277 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1714,183,0 chrXIII 517375 . T A 1358 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.02;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1391,150,0 chrXIII 517791 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.39;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2092,225,0 chrXIII 517795 . A G 2030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=4.728;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.463;QD=20.10;ReadPosRankSum=1.698;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2063,231,0 chrXIII 518064 . T C 1978 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.60;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2011,231,0 chrXIII 518109 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.43;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2891,306,0 chrXIII 518469 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.31;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1972,210,0 chrXIII 518853 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.924;QD=19.55;ReadPosRankSum=1.675;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1206,138,0 chrXIII 518907 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1393,153,0 chrXIII 519303 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.88;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:69:623,69,0 chrXIII 519681 . T C 1084 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.57;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1117,126,0 chrXIII 519897 . A G 2064 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2097,231,0 chrXIII 519991 . C A 1085 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.27;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1118,117,0 chrXIII 520305 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.33;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,38:39:78:709,78,0 chrXIII 520465 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.98;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:93:892,93,0 chrXIII 520497 . T C 675 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.76;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:38:78:708,78,0 chrXIII 521041 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6525;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.84;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2348,249,0 chrXIII 522060 . G A 824 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:857,93,0 chrXIII 522191 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.66;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:798,87,0 chrXIII 522201 . G A 756 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.09;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:789,87,0 chrXIII 522204 . T C 745 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=15.20;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:778,87,0 chrXIII 523223 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.97;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1532,171,0 chrXIII 523330 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.36;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1906,213,0 chrXIII 523390 . T A 1240 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1273,138,0 chrXIII 523761 . A G 849 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.22;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:99:882,99,0 chrXIII 524040 . T C 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.1266;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.374;QD=21.80;ReadPosRankSum=1.692;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,86:90:99:1995,225,0 chrXIII 524154 . A G 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=4.135;HaplotypeScore=3.4807;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.213;QD=21.37;ReadPosRankSum=1.611;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1251,141,0 chrXIII 524178 . T G 961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=2.814;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.917;QD=18.84;ReadPosRankSum=2.159;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:994,111,0 chrXIII 524221 . T G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.357;QD=19.87;ReadPosRankSum=2.248;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1265,141,0 chrXIII 524234 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.75;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1297,141,0 chrXIII 524320 . T A 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=80;Dels=0.00;FS=10.366;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.680;QD=20.01;ReadPosRankSum=2.355;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1634,174,0 chrXIII 525537 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2079,219,0 chrXIII 526584 . T A 1254 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1287,135,0 chrXIII 526851 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.02;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2081,231,0 chrXIII 526917 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.77;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1709,189,0 chrXIII 527250 . A T 2439 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.9356;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.85;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2472,273,0 chrXIII 527602 . A C 4161.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=184;Dels=0.00;FS=6.490;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.740;QD=22.61;ReadPosRankSum=2.382;SB=-2.215e+03 GT:AD:DP:GQ:PL 1/1:2,179:184:99:4161,465,0 chrXIII 528006 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=6.941;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.304;QD=20.35;ReadPosRankSum=1.693;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1844,204,0 chrXIII 528307 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1624,177,0 chrXIII 528368 . T C 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.163;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.478;QD=19.72;ReadPosRankSum=1.673;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1177,132,0 chrXIII 528469 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.85;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1180,135,0 chrXIII 528502 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.06;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1507,162,0 chrXIII 529219 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.43;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1426,156,0 chrXIII 529347 . A G 1412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.771;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=22.41;ReadPosRankSum=1.677;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1445,159,0 chrXIII 530518 . T A 1559 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.65;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1592,174,0 chrXIII 530525 . T G 1431 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.60;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1464,168,0 chrXIII 530620 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.43;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1426,150,0 chrXIII 530917 . C A 1986 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.07;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2019,219,0 chrXIII 531100 . C T 2480 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2513,267,0 chrXIII 531160 . T C 2265 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.2293;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.21;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2298,261,0 chrXIII 531873 . G T 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.72;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2084,222,0 chrXIII 532039 . G T 1415 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.20;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1448,159,0 chrXIII 532062 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.27;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1592,177,0 chrXIII 532475 . G A 1463 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.51;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1496,165,0 chrXIII 532529 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.27;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2019,222,0 chrXIII 532595 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=14.2575;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.18;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1970,216,0 chrXIII 532667 . A C 2081 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.38;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2114,237,0 chrXIII 532942 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=6.086;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.563;QD=20.18;ReadPosRankSum=2.377;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1405,156,0 chrXIII 533042 . A G 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.513;QD=16.58;ReadPosRankSum=1.696;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1625,186,0 chrXIII 533682 . G T 2997 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.17;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:3030,330,0 chrXIII 533925 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.13;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1538,165,0 chrXIII 534357 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=116;Dels=0.00;FS=7.186;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.711;QD=22.48;ReadPosRankSum=2.407;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,114:116:99:2641,285,0 chrXIII 534586 . T A 2167 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.04;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2200,237,0 chrXIII 534609 . G T 2176 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.54;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2209,240,0 chrXIII 535310 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.63;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1898,207,0 chrXIII 535721 . T C 585 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.28;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:69:618,69,0 chrXIII 535737 . A C 487 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.39;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:63:520,63,0 chrXIII 535756 . A C 460 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.40;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:54:493,54,0 chrXIII 536035 . T C 359 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:45:392,45,0 chrXIII 536440 . G A 917 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=15.81;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:950,102,0 chrXIII 536660 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.1161;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1542,165,0 chrXIII 536833 . C T 1258 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=15.72;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1291,141,0 chrXIII 536835 . G A 1274 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=16.33;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1307,138,0 chrXIII 536836 . C T 1241 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=15.91;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1274,138,0 chrXIII 536848 . T A 1184 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=13.77;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1217,132,0 chrXIII 536887 . A C 1094 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=12.02;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1127,123,0 chrXIII 536982 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.88;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1164,132,0 chrXIII 537052 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.32;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1653,186,0 chrXIII 537228 . T G 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.392;DP=62;Dels=0.00;FS=4.236;HaplotypeScore=8.8188;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.085;QD=18.45;ReadPosRankSum=1.619;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1177,135,0 chrXIII 537598 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.44;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1158,129,0 chrXIII 537691 . C G 1202 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1235,138,0 chrXIII 537942 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.41;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1578,168,0 chrXIII 538176 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.422;QD=21.72;ReadPosRankSum=0.698;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1532,174,0 chrXIII 538521 . A G 1078 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.59;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1111,120,0 chrXIII 538619 . A T 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=89.7204;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;MQRankSum=-0.904;QD=6.83;ReadPosRankSum=1.506;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:45:354,45,0 chrXIII 538764 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.78;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1420,150,0 chrXIII 538772 . A G 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.579;QD=16.49;ReadPosRankSum=1.681;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1154,129,0 chrXIII 539007 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=22.26;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1413,150,0 chrXIII 539282 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.684;QD=18.65;ReadPosRankSum=1.636;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1376,153,0 chrXIII 539541 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.14;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1593,180,0 chrXIII 539622 . A G 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=108;Dels=0.00;FS=9.280;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.104;QD=18.82;ReadPosRankSum=2.934;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2066,228,0 chrXIII 539856 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=10.14;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:966,111,0 chrXIII 539865 . A G 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.136;QD=10.09;ReadPosRankSum=1.695;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:971,108,0 chrXIII 540088 . C A 1963 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8570;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.52;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1996,219,0 chrXIII 540105 . T C 2020 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.80;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2053,222,0 chrXIII 540307 . T C 941 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.02;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:974,108,0 chrXIII 540423 . G C 1186 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.45;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1219,135,0 chrXIII 540446 . A T 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=9.149;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.690;QD=22.37;ReadPosRankSum=2.374;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1487,159,0 chrXIII 540526 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.81;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1049,111,0 chrXIII 541041 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.43;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1275,138,0 chrXIII 541095 . T A 960 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.11;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:993,114,0 chrXIII 541246 . A G 649 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.54;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:682,81,0 chrXIII 541511 . T C 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.381;QD=15.93;ReadPosRankSum=1.682;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1132,126,0 chrXIII 541716 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.45;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2058,222,0 chrXIII 541747 . C T 2352 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.00;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2385,258,0 chrXIII 541852 . T C 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=3.699;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.254;QD=21.45;ReadPosRankSum=1.686;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1685,189,0 chrXIII 542119 . T A 1828 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.51;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1861,207,0 chrXIII 542201 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.37;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1622,180,0 chrXIII 542277 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=14.50;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1585,174,0 chrXIII 542926 . T A 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=116;Dels=0.00;FS=5.822;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.783;QD=22.51;ReadPosRankSum=2.922;SB=-1.313e+03 GT:AD:DP:GQ:PL 1/1:3,113:116:99:2644,291,0 chrXIII 543143 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.474;QD=21.00;ReadPosRankSum=1.681;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1440,165,0 chrXIII 543224 . A C 1713 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.79;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1746,192,0 chrXIII 543227 . A G 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=104;Dels=0.00;FS=2.603;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.117;QD=17.01;ReadPosRankSum=2.874;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:3,101:104:99:1802,201,0 chrXIII 543392 . T C 983 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=19.27;ReadPosRankSum=1.664;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1016,114,0 chrXIII 544007 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.07;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1217,132,0 chrXIII 544385 . A C 1627 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1660,189,0 chrXIII 544466 . A G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.416;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.909;QD=20.87;ReadPosRankSum=1.698;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2141,246,0 chrXIII 544798 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5553;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.845;QD=18.83;ReadPosRankSum=1.187;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:2,113:116:99:2217,228,0 chrXIII 544984 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7492;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.99;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:2112,234,0 chrXIII 545060 . G C 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.2683;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=21.65;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2328,264,0 chrXIII 545520 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.66;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1940,210,0 chrXIII 545586 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.656;QD=18.49;ReadPosRankSum=1.656;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1753,195,0 chrXIII 545665 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=18.87;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1335,144,0 chrXIII 545686 . A G 1451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.516;QD=15.44;ReadPosRankSum=1.658;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1484,171,0 chrXIII 545786 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.40;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2236,243,0 chrXIII 545977 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.74;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1869,207,0 chrXIII 546319 . T C 2185 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.68;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2218,258,0 chrXIII 546760 . C T 2612 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6679;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.91;SB=-1.451e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2645,285,0 chrXIII 547440 . T A 3228.29 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.6585;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.09;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3261,348,0 chrXIII 547482 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.33;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2087,225,0 chrXIII 547537 . C T 1736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=87;Dels=0.00;FS=7.678;HaplotypeScore=12.4919;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.191;QD=19.95;ReadPosRankSum=1.922;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1769,192,0 chrXIII 547540 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.162;DP=90;Dels=0.00;FS=15.393;HaplotypeScore=4.6450;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.186;QD=19.04;ReadPosRankSum=2.614;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1747,195,0 chrXIII 547652 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.77;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1855,195,0 chrXIII 547731 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.48;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1869,198,0 chrXIII 548019 . G C 1269 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.4271;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.51;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1302,150,0 chrXIII 548115 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.14;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:878,93,0 chrXIII 548394 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:951,105,0 chrXIII 548624 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.66;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1232,135,0 chrXIII 548625 . T C 1188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.156;QD=18.86;ReadPosRankSum=2.372;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1221,135,0 chrXIII 548999 . G C 630 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=10.00;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:75:663,75,0 chrXIII 549187 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1494,165,0 chrXIII 549320 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.27;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1247,144,0 chrXIII 549484 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.17;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1496,168,0 chrXIII 549556 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.231;QD=19.88;ReadPosRankSum=1.687;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1544,168,0 chrXIII 549635 . T G 1852 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.35;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1885,210,0 chrXIII 549691 . T A 1459 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.5604;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.99;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1492,162,0 chrXIII 549772 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.5176;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.22;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1321,153,0 chrXIII 549834 . T C 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.292;QD=20.61;ReadPosRankSum=1.642;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1620,180,0 chrXIII 550076 . A G 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.597;QD=18.99;ReadPosRankSum=1.552;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1495,162,0 chrXIII 550458 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.24;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1711,189,0 chrXIII 550847 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=11.6755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.417;QD=21.30;ReadPosRankSum=1.697;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2163,243,0 chrXIII 550984 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.95;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1646,183,0 chrXIII 551044 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.55;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1328,147,0 chrXIII 551083 . G A 1075 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.55;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1108,120,0 chrXIII 551093 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4491;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=14.60;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1274,144,0 chrXIII 551147 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.83;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1901,204,0 chrXIII 551159 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.76;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1960,216,0 chrXIII 551554 . T G 2683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=115;Dels=0.00;FS=6.787;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.862;QD=23.33;ReadPosRankSum=2.406;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2716,306,0 chrXIII 551662 . A C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=4.683;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.696;QD=21.99;ReadPosRankSum=1.696;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2166,249,0 chrXIII 552227 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=14.25;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1073,120,0 chrXIII 552305 . G A 1012 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=13.49;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1045,111,0 chrXIII 552364 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=19.02;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1707,186,0 chrXIII 552466 . T G 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=103.5624;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=0.649;QD=0.37;ReadPosRankSum=3.375;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:5,103:110:9:73,9,0 chrXIII 552615 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.99;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1476,165,0 chrXIII 553020 . T A 2701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=2.660;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.736;QD=23.90;ReadPosRankSum=2.340;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2734,294,0 chrXIII 553241 . A C 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=3.468;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.069;QD=22.58;ReadPosRankSum=1.663;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2314,264,0 chrXIII 553315 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.92;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1866,201,0 chrXIII 554323 . G A 2432 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.33;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2465,267,0 chrXIII 554339 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.57;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2440,264,0 chrXIII 554399 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.926;DP=91;Dels=0.00;FS=4.799;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;MQRankSum=-2.135;QD=16.54;ReadPosRankSum=4.070;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:6,85:91:99:1538,171,0 chrXIII 554401 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=87;Dels=0.00;FS=10.959;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;MQRankSum=-1.544;QD=17.94;ReadPosRankSum=2.393;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1594,177,0 chrXIII 554421 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=16.34;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1781,207,0 chrXIII 554440 . T A 1641 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=13.45;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:1674,183,0 chrXIII 554456 . C T 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=-0.845;QD=11.73;ReadPosRankSum=1.245;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:2,120:123:99:1476,162,0 chrXIII 554457 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;MQRankSum=-0.530;QD=11.48;ReadPosRankSum=1.217;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1433,159,0 chrXIII 554514 . G C 1173 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=14.85;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1206,138,0 chrXIII 554580 . T C 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=8.880;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.469;QD=18.23;ReadPosRankSum=1.610;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1619,177,0 chrXIII 554724 . T G 1480 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.49;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1513,177,0 chrXIII 555126 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.89;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1375,153,0 chrXIII 555633 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.81;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1538,177,0 chrXIII 556209 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.979;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.378;QD=20.67;ReadPosRankSum=2.394;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1873,216,0 chrXIII 556759 . A T 1849 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.9633;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.25;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1882,204,0 chrXIII 557358 . G A 3310.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.1019;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.07;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3310,360,0 chrXIII 557425 . G A 3134 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.71;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3167,354,0 chrXIII 558627 . T A 700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=3.324;HaplotypeScore=4.2599;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.121;QD=16.28;ReadPosRankSum=1.168;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:78:733,78,0 chrXIII 558810 . G T 641 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.85;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:674,72,0 chrXIII 558877 . G A 529 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.89;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:562,60,0 chrXIII 558885 . G C 470 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=15.67;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:503,57,0 chrXIII 558894 . A G 461 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.46;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:54:494,54,0 chrXIII 558987 . A G 806 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.66;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:839,93,0 chrXIII 559132 . G T 826 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.15;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:859,93,0 chrXIII 559180 . A G 1018 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.14;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1051,114,0 chrXIII 559312 . A C 1266 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.21;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1299,147,0 chrXIII 559817 . A T 1034 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1067,114,0 chrXIII 559878 . G A 658 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.32;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:691,75,0 chrXIII 560210 . A C 1123 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.80;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1156,129,0 chrXIII 560261 . G C 1091 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.98;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1124,123,0 chrXIII 560317 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.77;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1165,126,0 chrXIII 561510 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.07;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1538,171,0 chrXIII 561662 . A G 407 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.65;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:48:440,48,0 chrXIII 561844 . T C 650 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=15.12;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:75:683,75,0 chrXIII 561863 . C T 508 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=14.94;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:57:541,57,0 chrXIII 561922 . A T 1350 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1383,147,0 chrXIII 561993 . T G 2562 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2595,288,0 chrXIII 562219 . A G 2449 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.01;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2482,279,0 chrXIII 562453 . T C 2471 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.61;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2504,282,0 chrXIII 562531 . C T 3354.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.96;SB=-2.107e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3354,363,0 chrXIII 562614 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9407;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.28;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1788,192,0 chrXIII 562658 . A G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.611;DP=78;Dels=0.00;FS=5.032;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.612;QD=20.01;ReadPosRankSum=3.713;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:5,73:78:99:1594,177,0 chrXIII 562698 . A G 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.1675;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.317;QD=17.99;ReadPosRankSum=1.683;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1328,147,0 chrXIII 562752 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=20.55;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1389,156,0 chrXIII 562796 . T C 1925 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.64;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1958,219,0 chrXIII 562848 . T C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.01;FS=7.490;HaplotypeScore=96.3995;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.292;QD=18.00;ReadPosRankSum=1.698;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1887,210,0 chrXIII 562900 . G T 1170 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=18.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1203,129,0 chrXIII 562933 . T C 897 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=16.02;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:930,105,0 chrXIII 562955 . T C 726 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=13.96;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:759,87,0 chrXIII 562992 . C T 275 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=9.17;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:33:308,33,0 chrXIII 562996 . T C 261 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=9.00;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:33:294,33,0 chrXIII 562997 . T C 221 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=8.19;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:254,30,0 chrXIII 562998 . A G 239 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=8.85;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:30:272,30,0 chrXIII 563002 . C T 233 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=6.66;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:266,30,0 chrXIII 563011 . A G 438 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=11.23;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:54:471,54,0 chrXIII 563016 . T C 426 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=0.660;QD=10.14;ReadPosRankSum=1.650;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:54:459,54,0 chrXIII 563019 . C A 438 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=10.19;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:51:471,51,0 chrXIII 563033 . G T 498 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=11.07;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:60:531,60,0 chrXIII 563052 . C G 543 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=9.36;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:66:576,66,0 chrXIII 563070 . A G 767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.216;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=0.157;QD=11.62;ReadPosRankSum=1.680;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:90:800,90,0 chrXIII 563071 . C A 820 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=0;QD=12.62;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:93:853,93,0 chrXIII 563086 . C A 822 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;QD=10.82;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:93:855,93,0 chrXIII 563099 . T A 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;MQRankSum=-1.597;QD=9.13;ReadPosRankSum=-0.022;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:81:736,81,0 chrXIII 563102 . G A 734 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=9.66;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:87:767,87,0 chrXIII 563134 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=15.52;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1306,153,0 chrXIII 563185 . A T 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=10.353;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;MQRankSum=-0.526;QD=19.44;ReadPosRankSum=2.377;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1355,150,0 chrXIII 563201 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=19.18;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1184,138,0 chrXIII 563212 . T G 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=56;Dels=0.00;FS=2.999;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;MQRankSum=-1.612;QD=16.30;ReadPosRankSum=2.362;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:946,111,0 chrXIII 563230 . T A 900 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.42;MQ0=0;QD=16.98;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:933,108,0 chrXIII 563251 . T C 783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.786;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;MQRankSum=-0.913;QD=13.98;ReadPosRankSum=1.669;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:93:816,93,0 chrXIII 563254 . T C 785 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=14.02;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:818,96,0 chrXIII 563284 . T C 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;MQRankSum=-0.712;QD=16.69;ReadPosRankSum=0.712;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1218,118,0 chrXIII 563326 . C T 2622 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=19.86;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2655,294,0 chrXIII 563353 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=23.72;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3069,336,0 chrXIII 563407 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;MQRankSum=-1.586;QD=19.56;ReadPosRankSum=1.696;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,94:98:99:1950,228,0 chrXIII 563422 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=17.66;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1499,180,0 chrXIII 563437 . A C 1311 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=14.73;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1344,159,0 chrXIII 563455 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=6.500;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=-1.159;QD=14.66;ReadPosRankSum=2.306;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:1543,186,0 chrXIII 563551 . A C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=-1.137;QD=21.06;ReadPosRankSum=1.624;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1381,165,0 chrXIII 563554 . C T 1254 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=19.59;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1287,147,0 chrXIII 563574 . T A 1004 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=18.25;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1037,123,0 chrXIII 563584 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=16.73;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:903,108,0 chrXIII 563599 . G A 966 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.89;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:999,111,0 chrXIII 563605 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=16.11;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:951,111,0 chrXIII 563674 . C T 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;MQRankSum=1.162;QD=16.02;ReadPosRankSum=-1.162;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1427,140,0 chrXIII 563701 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=16.19;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1555,168,0 chrXIII 563707 . C G 1407 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=14.07;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1440,165,0 chrXIII 563722 . G A 994 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=5.003;HaplotypeScore=5.3059;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;MQRankSum=-1.788;QD=10.69;ReadPosRankSum=2.344;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1027,126,0 chrXIII 563723 . A G 991 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=5.3059;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=1.085;QD=10.77;ReadPosRankSum=1.694;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1024,126,0 chrXIII 563731 . A G 861 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6417;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=10.50;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:894,102,0 chrXIII 563764 . C T 1202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=12.27;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1235,141,0 chrXIII 563792 . C G 1408 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=16.37;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1441,162,0 chrXIII 563812 . C G 1671 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.89;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1704,189,0 chrXIII 563893 . A G 1031 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=17.18;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1064,117,0 chrXIII 563905 . C T 813 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=15.34;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:846,93,0 chrXIII 563933 . G C 382 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=10.32;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:415,48,0 chrXIII 563935 . T C 381 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=10.30;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:48:414,48,0 chrXIII 563941 . G T 370 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=8.60;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:45:403,45,0 chrXIII 563947 . C T 313 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=7.28;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:39:346,39,0 chrXIII 563956 . A T 143.06 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=4.21;SB=-2.021e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:21:176,21,0 chrXIII 563975 . T G 171.03 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=5.18;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:24:204,24,0 chrXIII 563977 . T A 180.03 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=5.46;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:24:213,24,0 chrXIII 563988 . C T 239 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=7.47;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:30:272,30,0 chrXIII 563990 . A C 199.01 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.03;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:27:232,27,0 chrXIII 564026 . C T 323 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=10.09;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:39:356,39,0 chrXIII 564031 . T G 245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;MQRankSum=-1.476;QD=9.07;ReadPosRankSum=1.605;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:33:278,33,0 chrXIII 564064 . C T 488 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.27;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:521,57,0 chrXIII 564073 . C T 509 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=15.91;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:542,60,0 chrXIII 564157 . C T 771 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=16.06;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:804,90,0 chrXIII 564175 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.48;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1451,162,0 chrXIII 564270 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-1.056;QD=22.48;ReadPosRankSum=1.690;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1899,207,0 chrXIII 564295 . C A 2045 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=25.25;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2078,225,0 chrXIII 564380 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.12;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1110,126,0 chrXIII 564397 . A T 1156 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.02;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1189,129,0 chrXIII 564656 . T C 1589 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=16.55;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1622,183,0 chrXIII 564740 . C T 1767 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.0047;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.31;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1800,195,0 chrXIII 564785 . T C 2079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=3.013;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.196;QD=19.61;ReadPosRankSum=2.403;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2112,237,0 chrXIII 565076 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.02;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1799,195,0 chrXIII 565698 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.93;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1226,138,0 chrXIII 566147 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.37;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1867,198,0 chrXIII 566497 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.45;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1749,192,0 chrXIII 566650 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.76;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1991,210,0 chrXIII 566965 . A G 1417 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6886;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.54;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1450,159,0 chrXIII 566975 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5242;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.62;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1328,150,0 chrXIII 567163 . A G 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.924;QD=21.59;ReadPosRankSum=1.694;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1976,222,0 chrXIII 567592 . T A 1639 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7711;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.23;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1672,183,0 chrXIII 567729 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.388;QD=20.20;ReadPosRankSum=1.681;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1427,159,0 chrXIII 568072 . T A 1991 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.62;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2024,219,0 chrXIII 568220 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.34;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1116,117,0 chrXIII 568338 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.74;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1692,189,0 chrXIII 568443 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.36;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2392,255,0 chrXIII 568527 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.59;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1863,195,0 chrXIII 568577 . A G 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.062;QD=15.47;ReadPosRankSum=1.676;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:992,111,0 chrXIII 568585 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.34;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:950,108,0 chrXIII 568895 . G C 2824 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3875;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.24;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2857,315,0 chrXIII 569048 . C T 2705 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.7593;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.99;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2738,291,0 chrXIII 569109 . T A 2967 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.52;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3000,336,0 chrXIII 569309 . A T 2000 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2033,219,0 chrXIII 569415 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.86;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2036,216,0 chrXIII 569480 . A C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.986;DP=95;Dels=0.00;FS=4.779;HaplotypeScore=7.2736;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.849;QD=17.99;ReadPosRankSum=4.077;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:6,89:95:99:1742,192,0 chrXIII 569735 . T G 1587 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.84;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1620,186,0 chrXIII 569867 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1818,192,0 chrXIII 570998 . T C 884 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=18.04;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:917,105,0 chrXIII 571000 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=18.53;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:941,105,0 chrXIII 571024 . C T 617 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.69;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:650,69,0 chrXIII 571031 . T C 588 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=14.34;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:621,69,0 chrXIII 571144 . A G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.979;QD=16.28;ReadPosRankSum=1.657;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1531,174,0 chrXIII 571170 . G T 1712 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.29;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1745,186,0 chrXIII 571183 . T A 1610 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=4.197;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.301;QD=17.50;ReadPosRankSum=1.694;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1643,174,0 chrXIII 571190 . C A 1442 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=15.85;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1475,156,0 chrXIII 572319 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2086,243,0 chrXIII 572476 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.57;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1658,186,0 chrXIII 572646 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.9847;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.18;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1887,210,0 chrXIII 572747 . G C 1388 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.39;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1421,156,0 chrXIII 572794 . T A 999 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.22;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1032,111,0 chrXIII 572799 . A G 946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=57;Dels=0.00;FS=3.090;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.479;QD=16.60;ReadPosRankSum=2.362;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:2,54:57:99:979,105,0 chrXIII 572961 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=17.70;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1148,126,0 chrXIII 572972 . T C 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=1.405;QD=21.32;ReadPosRankSum=1.667;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1163,132,0 chrXIII 572974 . C A 1060 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=18.60;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1093,120,0 chrXIII 572995 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.04;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1977,210,0 chrXIII 573027 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.45;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2714,294,0 chrXIII 573111 . T G 3411.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=0.705;QD=23.52;ReadPosRankSum=1.637;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,144:145:99:3411,387,0 chrXIII 573136 . T A 3353.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.92;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3353,369,0 chrXIII 573151 . C T 3316.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.11;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3316,363,0 chrXIII 573200 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.122;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=0.176;QD=14.52;ReadPosRankSum=2.403;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,103:108:99:1601,177,0 chrXIII 573224 . G C 1567 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=16.32;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1600,180,0 chrXIII 573234 . C G 1558 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=0;QD=14.43;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1591,189,0 chrXIII 573242 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;QD=14.25;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1472,165,0 chrXIII 573251 . C A 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=110;Dels=0.05;FS=0.000;HaplotypeScore=10.4972;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;MQRankSum=1.567;QD=13.36;ReadPosRankSum=1.072;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1503,162,0 chrXIII 573292 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=16.82;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1816,201,0 chrXIII 573404 . C T 2995 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.4308;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.09;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,139:142:99:3028,321,0 chrXIII 573502 . C G 1942 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.67;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:104:99:1975,225,0 chrXIII 573569 . C G 1885 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=18.85;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1918,213,0 chrXIII 574060 . T G 1197 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.76;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1230,135,0 chrXIII 574079 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.30;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1282,138,0 chrXIII 574134 . G C 710 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=14.20;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:743,84,0 chrXIII 574146 . C A 727 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=13.98;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:760,81,0 chrXIII 574620 . C T 2456 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.54;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2489,270,0 chrXIII 574659 . C T 2602 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.68;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2635,285,0 chrXIII 574851 . A T 2508 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.62;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2541,267,0 chrXIII 574889 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4070;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.92;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2460,261,0 chrXIII 574908 . T C 2290 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=118;Dels=0.00;FS=8.714;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.022;QD=19.41;ReadPosRankSum=3.352;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2323,267,0 chrXIII 576343 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.13;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1320,147,0 chrXIII 576826 . C T 2908 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2283;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.90;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2941,321,0 chrXIII 576949 . T C 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.657;QD=20.84;ReadPosRankSum=1.613;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1242,138,0 chrXIII 577405 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.43;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1586,171,0 chrXIII 577667 . G C 1326 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.22;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1359,150,0 chrXIII 578615 . T G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.170;QD=22.30;ReadPosRankSum=1.639;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1683,183,0 chrXIII 578812 . T A 1012 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.84;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1045,114,0 chrXIII 579159 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1197,135,0 chrXIII 579347 . T C 2019 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.258;QD=21.25;ReadPosRankSum=1.696;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2052,225,0 chrXIII 579452 . T C 2278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.679;QD=22.33;ReadPosRankSum=1.596;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2311,261,0 chrXIII 579707 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.682;DP=106;Dels=0.00;FS=13.154;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.592;QD=20.28;ReadPosRankSum=4.647;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:8,98:106:99:2183,240,0 chrXIII 579851 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.27;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1713,189,0 chrXIII 579968 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2061,240,0 chrXIII 580121 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=77;Dels=0.00;FS=10.401;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.937;QD=23.40;ReadPosRankSum=2.384;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,73:77:99:1835,204,0 chrXIII 581099 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.80;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2213,237,0 chrXIII 581966 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.41;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1355,150,0 chrXIII 582869 . A G 1494 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=73;Dels=0.00;FS=9.077;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.422;QD=20.47;ReadPosRankSum=2.213;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1527,168,0 chrXIII 584140 . T C 626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=3.399;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.347;QD=17.89;ReadPosRankSum=1.634;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:75:659,75,0 chrXIII 584328 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.82;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2217,243,0 chrXIII 584496 . T C 1341 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.98;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1374,153,0 chrXIII 584569 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.51;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1486,156,0 chrXIII 584575 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=15.63;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1377,153,0 chrXIII 584581 . A T 1393 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=16.39;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1426,150,0 chrXIII 584588 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.12;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1212,129,0 chrXIII 584661 . G T 1406 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.57;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1439,156,0 chrXIII 584817 . T A 1414 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.49;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1447,159,0 chrXIII 584832 . A G 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-0.224;QD=18.69;ReadPosRankSum=1.676;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1192,132,0 chrXIII 584962 . A G 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=1.550;QD=16.17;ReadPosRankSum=1.595;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1262,147,0 chrXIII 584970 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.64;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1462,156,0 chrXIII 585021 . T G 1799 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.44;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1832,204,0 chrXIII 585141 . A G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.157;QD=20.20;ReadPosRankSum=1.680;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1366,153,0 chrXIII 585165 . T C 1358 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8555;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.68;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1391,159,0 chrXIII 585609 . A G 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=9.454;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.536;QD=22.06;ReadPosRankSum=2.399;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2173,252,0 chrXIII 585807 . A T 1332 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.20;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1365,147,0 chrXIII 585859 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.76;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1528,171,0 chrXIII 585987 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.96;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1830,201,0 chrXIII 586147 . C G 1588 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.89;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:76:99:1621,183,0 chrXIII 586182 . A G 1839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=4.935;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.278;QD=22.70;ReadPosRankSum=1.647;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1872,219,0 chrXIII 586251 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5989;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.74;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1257,135,0 chrXIII 586738 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;MQRankSum=-1.006;QD=15.66;ReadPosRankSum=1.676;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1035,117,0 chrXIII 586744 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=15.75;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:962,102,0 chrXIII 586795 . T G 1147 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8631;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.44;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1180,132,0 chrXIII 587257 . T G 856 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.45;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:889,99,0 chrXIII 587270 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.82;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:925,96,0 chrXIII 587271 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.69;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:919,96,0 chrXIII 587493 . T G 453 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.12;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:25:54:486,54,0 chrXIII 587600 . A G 550 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=13.10;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:66:583,66,0 chrXIII 587668 . T C 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9810;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-3.123;QD=6.40;ReadPosRankSum=-3.001;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:5,10:15:33:126,0,33 chrXIII 587686 . C T 363.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=0;MQRankSum=-3.667;QD=6.85;ReadPosRankSum=-1.324;SB=-3.089e+01 GT:AD:DP:GQ:PL 0/1:5,48:53:68:393,0,68 chrXIII 587694 . A G 488.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.8503;MLEAC=1;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=-2.782;QD=6.97;ReadPosRankSum=2.018;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:12,58:70:50:518,0,50 chrXIII 587697 . A G 545.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.8963;MLEAC=1;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=-3.766;QD=7.79;ReadPosRankSum=0.367;SB=-3.003e+01 GT:AD:DP:GQ:PL 0/1:6,64:70:24:575,0,24 chrXIII 587700 . A G 558.02 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.8963;MLEAC=1;MLEAF=0.500;MQ=33.31;MQ0=0;MQRankSum=-3.233;QD=7.75;ReadPosRankSum=-0.750;SB=-3.003e+01 GT:AD:DP:GQ:PL 0/1:4,68:72:21:588,0,21 chrXIII 587703 . A G 717 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.9130;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=9.96;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:87:750,87,0 chrXIII 587706 . A G 698 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=0;QD=9.69;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,72:72:84:731,84,0 chrXIII 587715 . G A 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.6185;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;MQRankSum=-0.484;QD=9.39;ReadPosRankSum=2.085;SB=-2.599e+01 GT:AD:DP:GQ:PL 1/1:9,70:79:69:775,69,0 chrXIII 587939 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=24.70;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1861,201,0 chrXIII 587969 . T C 1675 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.866;QD=21.75;ReadPosRankSum=1.641;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1708,195,0 chrXIII 588375 . C T 2925 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.5286;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=23.21;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2958,321,0 chrXIII 588573 . C T 1508.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.796;DP=193;Dels=0.00;FS=24.613;HaplotypeScore=168.6126;MLEAC=1;MLEAF=0.500;MQ=38.63;MQ0=2;MQRankSum=0.449;QD=7.81;ReadPosRankSum=5.408;SB=-8.010e+02 GT:AD:DP:GQ:PL 0/1:71,120:193:49:1538,0,49 chrXIII 588576 . T C 1049.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499;DP=205;Dels=0.01;FS=23.980;HaplotypeScore=220.3844;MLEAC=1;MLEAF=0.500;MQ=37.95;MQ0=2;MQRankSum=2.056;QD=5.12;ReadPosRankSum=7.606;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:114,88:203:99:1079,0,365 chrXIII 588579 . A C 1667 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=205;Dels=0.00;FS=2.512;HaplotypeScore=236.7252;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=2;MQRankSum=-1.151;QD=8.13;ReadPosRankSum=2.633;SB=-1.458e+03 GT:AD:DP:GQ:PL 1/1:3,166:204:99:1700,195,0 chrXIII 588585 . T C 961.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.286;DP=262;Dels=0.00;FS=34.201;HaplotypeScore=271.9150;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=3;MQRankSum=0.263;QD=3.67;ReadPosRankSum=7.131;SB=-3.900e+02 GT:AD:DP:GQ:PL 0/1:176,86:262:99:991,0,410 chrXIII 588609 . C T 264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=8.342;DP=292;Dels=0.00;FS=1.544;HaplotypeScore=487.3197;MLEAC=1;MLEAF=0.500;MQ=30.82;MQ0=3;MQRankSum=1.919;QD=0.90;ReadPosRankSum=-2.142;SB=-7.160e+02 GT:AD:DP:GQ:PL 0/1:201,90:291:99:294,0,370 chrXIII 588624 . T C 208.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644;DP=296;Dels=0.00;FS=1.905;HaplotypeScore=321.2345;MLEAC=1;MLEAF=0.500;MQ=31.98;MQ0=3;MQRankSum=-0.323;QD=0.70;ReadPosRankSum=5.200;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:241,53:295:99:238,0,629 chrXIII 588639 . T C 362.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.622;DP=281;Dels=0.00;FS=4.145;HaplotypeScore=365.7327;MLEAC=1;MLEAF=0.500;MQ=33.08;MQ0=3;MQRankSum=1.727;QD=1.29;ReadPosRankSum=-3.246;SB=-1.209e+03 GT:AD:DP:GQ:PL 0/1:120,160:281:99:392,0,399 chrXIII 588642 . T C 63.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.292;DP=271;Dels=0.00;FS=7.982;HaplotypeScore=369.6913;MLEAC=1;MLEAF=0.500;MQ=33.38;MQ0=3;MQRankSum=-0.555;QD=0.23;ReadPosRankSum=-1.568;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:196,74:271:93:93,0,718 chrXIII 588645 . T C 421.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010;DP=262;Dels=0.00;FS=7.028;HaplotypeScore=394.6106;MLEAC=1;MLEAF=0.500;MQ=34.06;MQ0=3;MQRankSum=2.444;QD=1.61;ReadPosRankSum=4.283;SB=-1.202e+03 GT:AD:DP:GQ:PL 0/1:114,146:262:99:451,0,276 chrXIII 588648 . T C 57.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520;DP=252;Dels=0.00;FS=5.334;HaplotypeScore=342.1443;MLEAC=1;MLEAF=0.500;MQ=34.72;MQ0=3;MQRankSum=0.149;QD=0.23;ReadPosRankSum=0.136;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:188,62:251:87:87,0,792 chrXIII 588651 . T C 74.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.974;DP=233;Dels=0.00;FS=4.146;HaplotypeScore=168.1102;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=3;MQRankSum=-0.046;QD=0.32;ReadPosRankSum=0.490;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:186,43:231:99:104,0,686 chrXIII 588654 . C T 114.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DP=227;Dels=0.00;FS=0.640;HaplotypeScore=139.9124;MLEAC=1;MLEAF=0.500;MQ=35.62;MQ0=3;MQRankSum=-0.887;QD=0.50;ReadPosRankSum=0.046;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:179,45:226:99:144,0,741 chrXIII 588927 . T A 1222 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=21.44;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1255,141,0 chrXIII 589250 . G A 737 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.55;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:770,81,0 chrXIII 589251 . G A 709 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=16.88;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:742,81,0 chrXIII 589273 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.41;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:870,96,0 chrXIII 589414 . A G 1063 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.87;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1096,120,0 chrXIII 589416 . A G 1060 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=16.83;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1093,126,0 chrXIII 589473 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=16.23;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1153,129,0 chrXIII 589588 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.64;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1353,150,0 chrXIII 589690 . G T 940 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.08;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:973,108,0 chrXIII 590016 . A G 1918 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1951,213,0 chrXIII 590486 . T C 2006 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.04;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2039,222,0 chrXIII 590865 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.31;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1617,183,0 chrXIII 591686 . T C 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;DP=103;Dels=0.00;FS=15.713;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.008;QD=19.08;ReadPosRankSum=3.752;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:5,98:103:99:1998,222,0 chrXIII 591930 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.20;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2181,237,0 chrXIII 593048 . C T 2024 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.65;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2057,225,0 chrXIII 593072 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.95;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2168,243,0 chrXIII 593277 . T A 2504 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.04;SB=-1.552e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2537,267,0 chrXIII 593285 . T C 2375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=3.005;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.466;QD=19.00;ReadPosRankSum=2.331;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:2,122:125:99:2408,264,0 chrXIII 593397 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.85;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2109,228,0 chrXIII 593685 . A G 895 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=12.26;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:928,105,0 chrXIII 594000 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.04;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2086,225,0 chrXIII 594213 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=16.87;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1653,183,0 chrXIII 594219 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.1375;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.32;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1773,198,0 chrXIII 594254 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.82;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1851,207,0 chrXIII 594280 . T A 1955 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.61;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1988,225,0 chrXIII 594379 . T C 1961 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=104;Dels=0.00;FS=3.038;HaplotypeScore=10.4408;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.645;QD=18.86;ReadPosRankSum=2.402;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1994,225,0 chrXIII 595697 . T C 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.163;DP=73;Dels=0.00;FS=4.483;HaplotypeScore=3.7714;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.495;QD=23.04;ReadPosRankSum=1.685;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1715,186,0 chrXIII 595719 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.55;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1589,171,0 chrXIII 595929 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.75;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1554,174,0 chrXIII 596122 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.69;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2202,243,0 chrXIII 596358 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.30;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1393,162,0 chrXIII 596760 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=3.216;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.613;QD=22.85;ReadPosRankSum=1.679;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1541,174,0 chrXIII 596917 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.33;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1697,186,0 chrXIII 596993 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1931,207,0 chrXIII 597167 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.37;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1459,162,0 chrXIII 597509 . C T 2115 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.26;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2148,234,0 chrXIII 597636 . A C 1289 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.46;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1322,147,0 chrXIII 597709 . G C 1301 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=18.59;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1334,150,0 chrXIII 597731 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.71;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1343,156,0 chrXIII 597758 . G C 1304 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.62;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1337,156,0 chrXIII 597926 . G T 2767 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.06;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2800,306,0 chrXIII 598154 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.72;SB=-1.307e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2292,252,0 chrXIII 598181 . C T 2605 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.18;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2638,291,0 chrXIII 598247 . C T 2444 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.20;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2477,270,0 chrXIII 598520 . T C 2151 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.73;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2184,249,0 chrXIII 599023 . T C 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.418;QD=21.60;ReadPosRankSum=1.702;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2539,279,0 chrXIII 599192 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.14;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1342,147,0 chrXIII 599343 . T C 2802 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.91;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2835,327,0 chrXIII 599439 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.65;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1546,180,0 chrXIII 599730 . A G 1455 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-0.504;QD=18.42;ReadPosRankSum=1.688;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1488,168,0 chrXIII 599732 . C T 1546 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=19.32;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1579,174,0 chrXIII 599735 . T C 1528 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=85;Dels=0.00;FS=6.829;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=-1.145;QD=17.98;ReadPosRankSum=2.392;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1561,174,0 chrXIII 599751 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=18.09;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1444,156,0 chrXIII 599808 . G A 1457 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=1;QD=18.21;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1490,156,0 chrXIII 599886 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=31.20;MQ0=3;QD=15.47;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1394,150,0 chrXIII 599901 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=2;QD=14.65;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1234,135,0 chrXIII 599907 . A G 1232 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=2;QD=15.02;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1265,141,0 chrXIII 599973 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.97;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1491,159,0 chrXIII 600252 . T C 1355 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=5;QD=19.93;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1388,156,0 chrXIII 600288 . T C 982 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=6;QD=14.88;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1015,111,0 chrXIII 600354 . A G 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=1;MQRankSum=-0.038;QD=18.15;ReadPosRankSum=1.694;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1721,192,0 chrXIII 600548 . C A 1065 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=1;QD=17.46;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1098,117,0 chrXIII 600549 . G A 1095 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=1;QD=17.95;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1128,120,0 chrXIII 600558 . C T 1188 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=2;QD=17.22;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1221,132,0 chrXIII 600564 . T A 1131 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=3;QD=17.14;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1164,126,0 chrXIII 600765 . C T 1084 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=4;QD=16.68;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1117,120,0 chrXIII 600792 . A G 1059 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=3;QD=16.55;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1092,126,0 chrXIII 600819 . C T 1201 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=4;QD=16.92;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1234,132,0 chrXIII 601104 . A T 1324 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.37;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1357,147,0 chrXIII 601213 . T C 1448 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.05;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1481,168,0 chrXIII 601257 . A C 984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-1.552;QD=12.62;ReadPosRankSum=1.687;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1017,117,0 chrXIII 601259 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=41.1251;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=12.56;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1013,114,0 chrXIII 601355 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6549;MLEAC=2;MLEAF=1.00;MQ=60.65;MQ0=0;QD=19.54;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1928,216,0 chrXIII 601394 . A G 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.304;HaplotypeScore=8.7484;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.020;QD=21.50;ReadPosRankSum=1.667;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2333,255,0 chrXIII 601700 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=1;QD=20.02;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2235,240,0 chrXIII 601760 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.6539;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=1;QD=20.61;SB=-1.341e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2465,279,0 chrXIII 601961 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=18.30;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1552,168,0 chrXIII 601986 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=3;QD=19.66;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1999,213,0 chrXIII 602018 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=3;QD=21.03;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2388,252,0 chrXIII 602096 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.3466;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=1;QD=15.11;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1831,198,0 chrXIII 602111 . T C 1679 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=1;QD=14.99;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1712,189,0 chrXIII 602408 . T A 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.842;HaplotypeScore=5.6453;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.429;QD=23.61;ReadPosRankSum=1.700;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2607,282,0 chrXIII 602462 . T C 2241 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=112;Dels=0.00;FS=4.166;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=5;MQRankSum=-0.081;QD=20.01;ReadPosRankSum=1.700;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2274,255,0 chrXIII 602564 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=2.627;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=1;MQRankSum=0.485;QD=18.37;ReadPosRankSum=2.371;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1778,201,0 chrXIII 602603 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=2;QD=19.92;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1686,183,0 chrXIII 602618 . T C 1576 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=2;QD=20.47;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:2,74:77:99:1609,177,0 chrXIII 602627 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=2;QD=20.26;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1613,186,0 chrXIII 602663 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2712;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=22.50;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1968,219,0 chrXIII 602744 . G A 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.020;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.9537;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=1.691;QD=22.09;ReadPosRankSum=-1.488;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1911,204,0 chrXIII 602774 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6496;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=1;QD=21.16;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1789,204,0 chrXIII 602975 . C T 1011 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=4;QD=15.55;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1044,111,0 chrXIII 603002 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=3;QD=15.51;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:917,105,0 chrXIII 603029 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=3;QD=18.46;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1344,141,0 chrXIII 603083 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=-1.394;QD=19.85;ReadPosRankSum=1.690;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1661,186,0 chrXIII 603086 . T C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=1.523;QD=19.31;ReadPosRankSum=1.690;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1636,180,0 chrXIII 603125 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=16.65;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1348,150,0 chrXIII 603131 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;MQRankSum=-1.155;QD=15.24;ReadPosRankSum=1.684;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1130,126,0 chrXIII 603172 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=20.56;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1534,162,0 chrXIII 603225 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=21.74;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1968,213,0 chrXIII 603417 . G C 1430 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.57;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1463,162,0 chrXIII 603572 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.346;QD=19.62;ReadPosRankSum=1.689;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1642,180,0 chrXIII 603797 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.54;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1791,195,0 chrXIII 604354 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.90;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2117,228,0 chrXIII 604624 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.28;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1623,180,0 chrXIII 604630 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.94;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1540,165,0 chrXIII 605013 . T C 1549 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=82;Dels=0.00;FS=2.562;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-2.013;QD=18.89;ReadPosRankSum=2.913;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:3,78:82:99:1582,177,0 chrXIII 605014 . G A 1646 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.07;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1679,183,0 chrXIII 605018 . G C 1497 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4993;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.48;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1530,177,0 chrXIII 605203 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.91;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2128,237,0 chrXIII 605479 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=14.25;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:44:72:660,72,0 chrXIII 605741 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.31;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1028,108,0 chrXIII 605754 . C G 919 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.38;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:952,105,0 chrXIII 605794 . C T 656 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.26;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:689,75,0 chrXIII 605895 . A G 1097 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=21.10;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:52:99:1130,126,0 chrXIII 605946 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.44;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1791,198,0 chrXIII 606299 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2388,255,0 chrXIII 606680 . C T 2169 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.36;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2202,237,0 chrXIII 606777 . T C 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=3.041;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.745;QD=20.44;ReadPosRankSum=2.133;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1464,165,0 chrXIII 607543 . A G 1608 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=16.58;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1641,183,0 chrXIII 607553 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=15.82;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1773,192,0 chrXIII 608020 . T G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=6.064;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.154;QD=21.57;ReadPosRankSum=1.698;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2233,240,0 chrXIII 608168 . C T 2230 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.46;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2263,249,0 chrXIII 608200 . A G 2442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.383;QD=20.18;ReadPosRankSum=1.703;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,118:121:99:2475,273,0 chrXIII 608238 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.96;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2508,279,0 chrXIII 608255 . A G 2369 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.96;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2402,267,0 chrXIII 608340 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1245,135,0 chrXIII 608372 . G A 714 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:747,84,0 chrXIII 608584 . A G 2631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.509;QD=21.39;ReadPosRankSum=1.703;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,118:123:99:2664,294,0 chrXIII 608733 . T C 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=-0.609;QD=23.16;ReadPosRankSum=2.391;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1955,222,0 chrXIII 608910 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=11.40;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1253,141,0 chrXIII 608922 . C T 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.285;DP=137;Dels=0.00;FS=33.822;HaplotypeScore=7.2927;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=0;MQRankSum=-2.088;QD=1.46;ReadPosRankSum=-5.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,55:137:99:230,0,911 chrXIII 608937 . T C 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.109;DP=176;Dels=0.00;FS=3.833;HaplotypeScore=22.2384;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;MQRankSum=-1.866;QD=8.72;ReadPosRankSum=-1.182;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:21,155:176:72:1567,72,0 chrXIII 608946 . T C 405.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.734;DP=190;Dels=0.00;FS=40.025;HaplotypeScore=26.2163;MLEAC=1;MLEAF=0.500;MQ=33.68;MQ0=0;MQRankSum=-0.824;QD=2.13;ReadPosRankSum=-1.913;SB=-4.030e+02 GT:AD:DP:GQ:PL 0/1:131,59:190:99:435,0,1076 chrXIII 608961 . C T 256.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DP=197;Dels=0.00;FS=1.528;HaplotypeScore=40.8278;MLEAC=1;MLEAF=0.500;MQ=33.90;MQ0=1;MQRankSum=-0.880;QD=1.30;ReadPosRankSum=-5.223;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:158,39:197:99:286,0,1154 chrXIII 608967 . T C 1173.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.014;DP=191;Dels=0.02;FS=21.983;HaplotypeScore=42.4486;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=1;MQRankSum=-1.871;QD=6.14;ReadPosRankSum=-0.703;SB=-9.650e+02 GT:AD:DP:GQ:PL 0/1:18,169:187:55:1203,0,55 chrXIII 608979 . C T 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.8869;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=2;MQRankSum=0.362;QD=9.35;ReadPosRankSum=-1.523;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:1,183:184:99:1753,168,0 chrXIII 608991 . T C 454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.616;DP=186;Dels=0.00;FS=51.483;HaplotypeScore=17.7041;MLEAC=1;MLEAF=0.500;MQ=32.51;MQ0=8;MQRankSum=0.993;QD=2.44;ReadPosRankSum=-1.739;SB=-3.250e+02 GT:AD:DP:GQ:PL 0/1:87,99:186:99:484,0,770 chrXIII 609003 . C T 1105.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=135;Dels=0.00;FS=12.874;HaplotypeScore=3.4876;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=8;MQRankSum=-0.829;QD=8.19;ReadPosRankSum=1.083;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:7,128:135:12:1138,12,0 chrXIII 609006 . C T 1230 filter AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.4863;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=9;QD=9.46;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:1263,141,0 chrXIII 609063 . G A 369.04 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.411;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=26;MQRankSum=-0.638;QD=3.39;ReadPosRankSum=0.609;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:19,90:109:23:402,23,0 chrXIII 609084 . T C 280.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=18.59;MQ0=20;MQRankSum=0.483;QD=2.98;ReadPosRankSum=0.017;SB=-2.143e+02 GT:AD:DP:GQ:PL 1/1:18,75:93:15:313,15,0 chrXIII 609090 . T C 196.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.125;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.77;MQ0=19;MQRankSum=-0.590;QD=2.23;ReadPosRankSum=0.268;SB=-1.485e+02 GT:AD:DP:GQ:PL 1/1:17,71:88:4:227,4,0 chrXIII 609093 . C T 179.04 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=18.32;MQ0=19;MQRankSum=-1.425;QD=2.13;ReadPosRankSum=0.133;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:18,66:84:18:209,0,18 chrXIII 609099 . G A 79.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.72;MQ0=16;MQRankSum=-1.380;QD=1.04;ReadPosRankSum=-0.185;SB=-5.481e+01 GT:AD:DP:GQ:PL 0/1:15,61:76:26:109,0,26 chrXIII 609142 . A G 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=0;QD=6.65;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:99,12,0 chrXIII 609147 . C T 76.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;MQRankSum=1.488;QD=5.47;ReadPosRankSum=0.496;SB=-1.093e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:12:109,12,0 chrXIII 609150 . T A 72.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;MQRankSum=1.302;QD=4.53;ReadPosRankSum=1.085;SB=-1.055e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:12:105,12,0 chrXIII 609156 . T C 69.51 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=0;QD=4.34;SB=-1.025e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:12:102,12,0 chrXIII 609180 . T C 99.26 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=1;QD=4.32;SB=-1.033e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:15:132,15,0 chrXIII 609315 . C T 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.479;DP=332;Dels=0.00;FS=71.656;HaplotypeScore=21.7104;MLEAC=1;MLEAF=0.500;MQ=37.90;MQ0=17;MQRankSum=-5.557;QD=0.27;ReadPosRankSum=-11.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,102:332:99:121,0,3718 chrXIII 609317 . G A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.697;DP=332;Dels=0.00;FS=71.424;HaplotypeScore=21.1476;MLEAC=1;MLEAF=0.500;MQ=37.90;MQ0=17;MQRankSum=-6.023;QD=0.41;ReadPosRankSum=-10.970;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:230,101:332:99:165,0,3738 chrXIII 609330 . G A 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=12.953;DP=422;Dels=0.00;FS=145.075;HaplotypeScore=38.1162;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=17;MQRankSum=-7.490;QD=0.22;ReadPosRankSum=-7.941;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:238,184:422:99:123,0,3548 chrXIII 609345 . C T 448.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.057;DP=447;Dels=0.00;FS=35.590;HaplotypeScore=182.0310;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=14;MQRankSum=4.380;QD=1.00;ReadPosRankSum=-3.489;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:388,58:447:99:478,0,3505 chrXIII 609346 . G A 458.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.495;DP=453;Dels=0.00;FS=114.984;HaplotypeScore=186.9113;MLEAC=1;MLEAF=0.500;MQ=36.98;MQ0=14;MQRankSum=-6.193;QD=1.01;ReadPosRankSum=6.521;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:240,208:453:99:488,0,3501 chrXIII 609348 . T C 959.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.704;DP=454;Dels=0.00;FS=225.896;HaplotypeScore=190.8547;MLEAC=1;MLEAF=0.500;MQ=36.91;MQ0=15;MQRankSum=-2.646;QD=2.11;ReadPosRankSum=7.210;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:227,227:454:99:989,0,3221 chrXIII 609372 . T C 355.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.378;DP=409;Dels=0.00;FS=248.743;HaplotypeScore=119.7848;MLEAC=1;MLEAF=0.500;MQ=33.97;MQ0=8;MQRankSum=0.054;QD=0.87;ReadPosRankSum=3.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:224,185:409:99:385,0,3157 chrXIII 609378 . A C 2127.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.373;DP=386;Dels=0.00;FS=133.962;HaplotypeScore=135.5957;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=9;MQRankSum=2.104;QD=5.51;ReadPosRankSum=-0.034;SB=-6.990e+02 GT:AD:DP:GQ:PL 0/1:217,168:386:99:2157,0,1085 chrXIII 609381 . T C 1990.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.334;DP=377;Dels=0.00;FS=117.864;HaplotypeScore=133.4526;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=9;MQRankSum=2.722;QD=5.28;ReadPosRankSum=2.604;SB=-6.190e+02 GT:AD:DP:GQ:PL 0/1:218,159:377:99:2020,0,1122 chrXIII 609384 . C T 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.473;DP=373;Dels=0.00;FS=137.249;HaplotypeScore=90.9418;MLEAC=1;MLEAF=0.500;MQ=33.32;MQ0=11;MQRankSum=-2.050;QD=0.53;ReadPosRankSum=-6.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:211,162:373:99:227,0,2868 chrXIII 609420 . G A 555.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.223;DP=156;Dels=0.00;FS=17.294;HaplotypeScore=22.9711;MLEAC=1;MLEAF=0.500;MQ=31.68;MQ0=20;MQRankSum=2.809;QD=3.56;ReadPosRankSum=0.417;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:116,40:156:99:585,0,1130 chrXIII 609441 . T C 121.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=123;Dels=0.00;FS=3.507;HaplotypeScore=9.7663;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=18;MQRankSum=0.358;QD=0.98;ReadPosRankSum=-1.673;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:101,22:123:99:151,0,1001 chrXIII 609447 . T C 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.213;DP=117;Dels=0.00;FS=2.157;HaplotypeScore=7.9075;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=17;MQRankSum=-0.514;QD=0.37;ReadPosRankSum=-3.050;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,20:117:73:73,0,1253 chrXIII 609450 . C T 65.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.331;DP=111;Dels=0.00;FS=14.747;HaplotypeScore=5.5414;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=17;MQRankSum=-2.057;QD=0.59;ReadPosRankSum=-3.331;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,19:111:95:95,0,1135 chrXIII 609456 . G A 147.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.102;DP=106;Dels=0.00;FS=33.617;HaplotypeScore=3.5654;MLEAC=1;MLEAF=0.500;MQ=28.61;MQ0=16;MQRankSum=-0.410;QD=1.39;ReadPosRankSum=-3.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,22:106:99:177,0,971 chrXIII 609489 . T C 3068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=168;Dels=0.00;FS=3.850;HaplotypeScore=5.7033;MLEAC=2;MLEAF=1.00;MQ=31.32;MQ0=3;MQRankSum=-0.787;QD=18.26;ReadPosRankSum=1.711;SB=-1.682e+03 GT:AD:DP:GQ:PL 1/1:1,167:168:99:3101,339,0 chrXIII 609570 . A T 630.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DP=207;Dels=0.00;FS=7.104;HaplotypeScore=21.2421;MLEAC=1;MLEAF=0.500;MQ=34.05;MQ0=0;MQRankSum=3.883;QD=3.04;ReadPosRankSum=-3.265;SB=-4.450e+02 GT:AD:DP:GQ:PL 0/1:134,73:207:99:660,0,2067 chrXIII 609579 . T C 750.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=230;Dels=0.00;FS=3.667;HaplotypeScore=31.9664;MLEAC=1;MLEAF=0.500;MQ=35.01;MQ0=0;MQRankSum=4.394;QD=3.26;ReadPosRankSum=-1.198;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:146,81:230:99:780,0,1854 chrXIII 609696 . T C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.304;DP=343;Dels=0.00;FS=27.602;HaplotypeScore=463.5098;MLEAC=1;MLEAF=0.500;MQ=32.90;MQ0=15;MQRankSum=-1.699;QD=0.25;ReadPosRankSum=5.044;SB=-2.730e+02 GT:AD:DP:GQ:PL 0/1:257,78:343:99:116,0,2345 chrXIII 609708 . C T 180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DP=300;Dels=0.00;FS=30.540;HaplotypeScore=166.1500;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=14;MQRankSum=-0.021;QD=0.60;ReadPosRankSum=-0.746;SB=-3.860e+02 GT:AD:DP:GQ:PL 0/1:207,92:300:99:210,0,1734 chrXIII 609710 . G A 199.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.765;DP=302;Dels=0.00;FS=24.367;HaplotypeScore=124.7015;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=14;MQRankSum=1.469;QD=0.66;ReadPosRankSum=-0.233;SB=-4.590e+02 GT:AD:DP:GQ:PL 0/1:208,93:301:99:229,0,1685 chrXIII 609723 . G C 253.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DP=294;Dels=0.00;FS=20.598;HaplotypeScore=43.7839;MLEAC=1;MLEAF=0.500;MQ=28.08;MQ0=11;MQRankSum=0.394;QD=0.86;ReadPosRankSum=-0.355;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:176,109:294:99:283,0,1345 chrXIII 609726 . T C 283.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.129;DP=288;Dels=0.00;FS=11.821;HaplotypeScore=40.7099;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=8;MQRankSum=1.688;QD=0.98;ReadPosRankSum=-0.133;SB=-7.490e+02 GT:AD:DP:GQ:PL 0/1:172,116:288:99:313,0,1330 chrXIII 609729 . T C 351.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.947;DP=278;Dels=0.00;FS=17.125;HaplotypeScore=108.9605;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=7;MQRankSum=1.652;QD=1.26;ReadPosRankSum=-0.611;SB=-7.990e+02 GT:AD:DP:GQ:PL 0/1:161,117:278:99:381,0,1245 chrXIII 609738 . C T 766.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.413;DP=276;Dels=0.00;FS=0.943;HaplotypeScore=180.0270;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=5;MQRankSum=-2.696;QD=2.78;ReadPosRankSum=-0.379;SB=-8.970e+02 GT:AD:DP:GQ:PL 0/1:160,116:276:99:796,0,755 chrXIII 609739 . G A 341.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;DP=274;Dels=0.00;FS=1.019;HaplotypeScore=179.0420;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=5;MQRankSum=2.936;QD=1.24;ReadPosRankSum=-3.536;SB=-6.500e+02 GT:AD:DP:GQ:PL 0/1:193,81:274:99:371,0,1169 chrXIII 609741 . T C 1199.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.799;DP=266;Dels=0.00;FS=3.908;HaplotypeScore=176.6941;MLEAC=1;MLEAF=0.500;MQ=30.12;MQ0=5;MQRankSum=-0.389;QD=4.51;ReadPosRankSum=-4.792;SB=-1.709e+03 GT:AD:DP:GQ:PL 0/1:75,189:266:99:1229,0,186 chrXIII 609747 . C A 628.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;DP=246;Dels=0.00;FS=1.636;HaplotypeScore=363.0091;MLEAC=1;MLEAF=0.500;MQ=30.57;MQ0=5;MQRankSum=-0.678;QD=2.55;ReadPosRankSum=0.517;SB=-6.900e+02 GT:AD:DP:GQ:PL 0/1:135,98:246:99:658,0,671 chrXIII 609750 . C T 602.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.719;DP=233;Dels=0.00;FS=5.654;HaplotypeScore=313.6640;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=1;MQRankSum=-3.083;QD=2.58;ReadPosRankSum=0.483;SB=-4.680e+02 GT:AD:DP:GQ:PL 0/1:148,84:233:99:632,0,710 chrXIII 609765 . A G 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.959;DP=220;Dels=0.00;FS=1.341;HaplotypeScore=336.5298;MLEAC=1;MLEAF=0.500;MQ=34.25;MQ0=0;MQRankSum=-3.186;QD=0.29;ReadPosRankSum=-1.659;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:133,55:220:93:93,0,1161 chrXIII 609774 . T C 407.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540;DP=187;Dels=0.00;FS=4.741;HaplotypeScore=309.6893;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=0;MQRankSum=-4.361;QD=2.18;ReadPosRankSum=-2.499;SB=-3.310e+02 GT:AD:DP:GQ:PL 0/1:114,73:187:99:437,0,1287 chrXIII 609777 . T C 75.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;DP=201;Dels=0.00;FS=9.036;HaplotypeScore=332.9553;MLEAC=1;MLEAF=0.500;MQ=37.22;MQ0=0;MQRankSum=-2.993;QD=0.37;ReadPosRankSum=-0.809;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:173,28:201:99:105,0,1741 chrXIII 609780 . T C 143.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.941;DP=194;Dels=0.00;FS=3.223;HaplotypeScore=317.6072;MLEAC=1;MLEAF=0.500;MQ=37.71;MQ0=0;MQRankSum=-4.871;QD=0.74;ReadPosRankSum=-0.499;SB=-1.810e+02 GT:AD:DP:GQ:PL 0/1:145,49:194:99:173,0,1725 chrXIII 609783 . T C 86.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;DP=187;Dels=0.00;FS=13.272;HaplotypeScore=258.3111;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-3.605;QD=0.46;ReadPosRankSum=-4.884;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:159,28:187:99:116,0,1874 chrXIII 609786 . C T 110.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.641;DP=190;Dels=0.00;FS=8.220;HaplotypeScore=172.7594;MLEAC=1;MLEAF=0.500;MQ=38.88;MQ0=0;MQRankSum=-4.368;QD=0.58;ReadPosRankSum=-6.526;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:154,36:190:99:140,0,1750 chrXIII 609834 . T C 287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870;DP=147;Dels=0.00;FS=5.265;HaplotypeScore=89.7459;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=1;MQRankSum=-4.497;QD=1.95;ReadPosRankSum=-0.482;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:116,31:147:99:317,0,1447 chrXIII 609992 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=13.51;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,133:134:99:1844,201,0 chrXIII 610070 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.40;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1937,213,0 chrXIII 610501 . C G 2645 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.04;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2678,306,0 chrXIII 610916 . G T 1649 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.87;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1682,180,0 chrXIII 611130 . A T 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=6.340;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-2.062;QD=20.01;ReadPosRankSum=2.380;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1454,156,0 chrXIII 611382 . T C 2651 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=21.73;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2684,300,0 chrXIII 611396 . A T 2642 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.31;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2675,291,0 chrXIII 611810 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.48;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1456,156,0 chrXIII 611899 . C G 841 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.56;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:874,96,0 chrXIII 612029 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.33;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1078,114,0 chrXIII 612269 . T C 918 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:951,105,0 chrXIII 612492 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.40;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1332,141,0 chrXIII 612545 . A G 1197 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1230,135,0 chrXIII 613158 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=6.8773;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.370;QD=19.07;ReadPosRankSum=1.681;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1311,150,0 chrXIII 613260 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.192;QD=20.42;ReadPosRankSum=1.597;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1605,177,0 chrXIII 613284 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.72;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1287,144,0 chrXIII 613424 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.44;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1198,126,0 chrXIII 613425 . T A 1105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.717;QD=19.05;ReadPosRankSum=1.673;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1138,123,0 chrXIII 613481 . A G 1101 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=16.94;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1134,126,0 chrXIII 613737 . T C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.335;QD=21.20;ReadPosRankSum=1.621;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1390,156,0 chrXIII 613894 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.46;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1785,192,0 chrXIII 614170 . C G 1184 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.41;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1217,135,0 chrXIII 614277 . C T 1892 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.34;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1925,210,0 chrXIII 614358 . G A 3124 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.14;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3157,336,0 chrXIII 614450 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.969;QD=21.38;ReadPosRankSum=1.700;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2363,261,0 chrXIII 614731 . A G 2709 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.67;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2742,306,0 chrXIII 614840 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.18;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1473,168,0 chrXIII 614847 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.00;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1441,153,0 chrXIII 615001 . G T 1476 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.71;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1509,168,0 chrXIII 615436 . T A 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.111;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.4913;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.106;QD=19.96;ReadPosRankSum=1.106;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1909,196,0 chrXIII 615554 . T G 1418 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1451,168,0 chrXIII 615603 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.45;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1297,150,0 chrXIII 615663 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1322,141,0 chrXIII 615950 . T C 1859 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1892,210,0 chrXIII 616086 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.44;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2306,270,0 chrXIII 616262 . A G 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.541;QD=18.33;ReadPosRankSum=1.678;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1206,135,0 chrXIII 616481 . A G 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.217;QD=18.33;ReadPosRankSum=1.678;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1206,135,0 chrXIII 616897 . A G 2642 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.02;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2675,294,0 chrXIII 617306 . A T 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=122;Dels=0.00;FS=3.838;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.474;QD=19.12;ReadPosRankSum=1.675;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2366,267,0 chrXIII 617393 . T C 2842 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.74;SB=-1.533e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2875,327,0 chrXIII 617639 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.162;QD=20.32;ReadPosRankSum=1.691;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1760,195,0 chrXIII 617657 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=0.857;QD=19.73;ReadPosRankSum=1.696;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1907,213,0 chrXIII 617810 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.68;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2288,249,0 chrXIII 617952 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5851;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.63;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2131,237,0 chrXIII 618075 . G A 1001 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.30;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1034,114,0 chrXIII 618080 . T C 1003 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.67;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1036,117,0 chrXIII 618249 . T G 1726 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.36;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1759,195,0 chrXIII 618544 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.61;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2237,252,0 chrXIII 618829 . A T 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=90;Dels=0.00;FS=9.479;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.157;QD=21.33;ReadPosRankSum=2.922;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1953,216,0 chrXIII 619339 . T A 731 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.84;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:764,81,0 chrXIII 619538 . C G 1115 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.44;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1148,129,0 chrXIII 619660 . A G 1588 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.85;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1621,186,0 chrXIII 619691 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.61;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1898,204,0 chrXIII 620533 . A G 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.341;QD=19.10;ReadPosRankSum=1.676;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1236,138,0 chrXIII 621112 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.36;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1710,189,0 chrXIII 621454 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.73;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1718,183,0 chrXIII 621489 . C G 1394 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.23;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1427,159,0 chrXIII 622006 . C A 1271 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=19.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1304,138,0 chrXIII 622008 . C T 1120 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=17.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1153,129,0 chrXIII 622033 . G A 798 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:90:831,90,0 chrXIII 622063 . A G 722 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:84:755,84,0 chrXIII 622071 . A C 719 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.34;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:87:752,87,0 chrXIII 622076 . T G 799 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:93:832,93,0 chrXIII 622122 . A C 1021 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1054,117,0 chrXIII 622209 . A G 1136 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1169,132,0 chrXIII 622608 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.83;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1935,213,0 chrXIII 622664 . T G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.437;QD=19.93;ReadPosRankSum=1.676;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2485,288,0 chrXIII 622747 . T G 1809 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.90;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1842,216,0 chrXIII 623045 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.79;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1634,177,0 chrXIII 623049 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.28;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1588,174,0 chrXIII 623124 . T C 885 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=14.51;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:918,102,0 chrXIII 623127 . C T 906 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.36;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:939,102,0 chrXIII 623402 . T A 301 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=23.7753;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=10.75;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:334,45,0 chrXIII 623505 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.68;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:819,87,0 chrXIII 623510 . T C 664 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=16.60;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:78:697,78,0 chrXIII 623598 . T A 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.357;QD=21.94;ReadPosRankSum=1.677;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1415,150,0 chrXIII 623608 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.78;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1259,138,0 chrXIII 623868 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.60;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1783,195,0 chrXIII 624297 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.2272;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.59;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1804,201,0 chrXIII 624694 . T C 3456.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=156;Dels=0.00;FS=3.211;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.397;QD=22.15;ReadPosRankSum=1.710;SB=-1.962e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3456,384,0 chrXIII 624780 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.5000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.04;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2083,228,0 chrXIII 624949 . A G 2656 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-1.745e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2689,303,0 chrXIII 625068 . T C 2739 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.0944;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.14;SB=-1.698e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2772,306,0 chrXIII 625245 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.37;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1834,204,0 chrXIII 625730 . A G 226 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=10.76;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,15:21:30:259,30,0 chrXIII 625824 . G C 368 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=9.44;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:45:401,45,0 chrXIII 625828 . G A 359 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=8.76;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:42:392,42,0 chrXIII 625846 . A T 387 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=7.74;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:45:420,45,0 chrXIII 625850 . T C 371 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=7.73;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:45:404,45,0 chrXIII 625851 . T C 315 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.70;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:39:348,39,0 chrXIII 625858 . C A 381 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=7.06;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:54:45:414,45,0 chrXIII 625864 . T A 294 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.9660;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=5.44;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:39:327,39,0 chrXIII 625931 . C T 735 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.33;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:81:768,81,0 chrXIII 625941 . C T 820 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.40;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:93:853,93,0 chrXIII 626249 . T G 1540 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.25;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1573,174,0 chrXIII 626327 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.11;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1218,138,0 chrXIII 626342 . T G 1092 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.83;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1125,129,0 chrXIII 626430 . A G 651 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.73;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:684,78,0 chrXIII 626652 . G A 861 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.08;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:894,93,0 chrXIII 627290 . G A 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.909;QD=20.34;ReadPosRankSum=1.698;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2087,207,0 chrXIII 627338 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=15.95;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,128:130:99:2106,231,0 chrXIII 627557 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.75;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2404,267,0 chrXIII 627939 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=11.0704;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:1930,207,0 chrXIII 628036 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.52;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1774,192,0 chrXIII 628401 . G T 875 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.44;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:908,102,0 chrXIII 628415 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.53;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:904,96,0 chrXIII 628650 . A G 693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.053;QD=21.00;ReadPosRankSum=1.523;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,32:33:81:726,81,0 chrXIII 628892 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.03;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:96:892,96,0 chrXIII 628982 . T A 1401 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.97;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1434,165,0 chrXIII 629060 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.02;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1594,171,0 chrXIII 629252 . A T 2031 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.18;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2064,219,0 chrXIII 629269 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.12;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2018,225,0 chrXIII 629513 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.48;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2312,261,0 chrXIII 629793 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.55;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1908,207,0 chrXIII 630222 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.22;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1833,207,0 chrXIII 630246 . T A 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=12.209;HaplotypeScore=2.8765;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.582;QD=18.16;ReadPosRankSum=2.771;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1395,147,0 chrXIII 630249 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.6652;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.18;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1414,153,0 chrXIII 630348 . C G 1981 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.53;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2014,222,0 chrXIII 630357 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.47;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2051,216,0 chrXIII 630568 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.31;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1539,165,0 chrXIII 630626 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.251;QD=21.49;ReadPosRankSum=1.684;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1580,177,0 chrXIII 630677 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.66;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1831,204,0 chrXIII 630740 . T G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=2.699;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.523;QD=22.87;ReadPosRankSum=2.397;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2160,240,0 chrXIII 630977 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.25;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:71:99:1400,162,0 chrXIII 631497 . C T 2710 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.64;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2743,294,0 chrXIII 631574 . T A 2374 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.05;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2407,270,0 chrXIII 631615 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.07;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2132,243,0 chrXIII 633062 . A G 1544 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.06;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1577,174,0 chrXIII 633857 . T C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=4.125;HaplotypeScore=8.8650;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.458;QD=18.72;ReadPosRankSum=1.699;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2036,237,0 chrXIII 633893 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=20.34;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1945,210,0 chrXIII 634582 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.87;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1181,135,0 chrXIII 634615 . T C 687 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.47;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:720,81,0 chrXIII 634650 . C T 472 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.67;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:505,54,0 chrXIII 634668 . G A 301 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.05;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:39:334,39,0 chrXIII 634674 . T C 180.03 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=10.00;SB=-5.604e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:24:213,24,0 chrXIII 635124 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.60;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1614,180,0 chrXIII 635337 . T G 1462 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.03;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1495,168,0 chrXIII 635402 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.36;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1392,156,0 chrXIII 635501 . G A 2194 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.70;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2227,240,0 chrXIII 635513 . A G 2007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=5.785;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=-2.050;QD=19.87;ReadPosRankSum=2.931;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2040,222,0 chrXIII 635544 . G A 1818 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=16.38;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1851,201,0 chrXIII 636081 . G C 1161 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.11;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1194,135,0 chrXIII 636208 . C T 1620 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.89;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1653,180,0 chrXIII 636239 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.09;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1404,159,0 chrXIII 636750 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.622;QD=18.74;ReadPosRankSum=1.599;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1532,174,0 chrXIII 637295 . C T 2437 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.83;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2470,267,0 chrXIII 637578 . A G 1364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.293;QD=18.68;ReadPosRankSum=1.635;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,70:73:99:1397,153,0 chrXIII 638108 . A G 998 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.83;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,117,0 chrXIII 638780 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.93;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2419,258,0 chrXIII 639659 . C T 3089 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.19;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3122,342,0 chrXIII 640295 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.29;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1672,183,0 chrXIII 640367 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.51;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1448,165,0 chrXIII 640619 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=15.97;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1263,150,0 chrXIII 640720 . G C 1355 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.17;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1388,156,0 chrXIII 640737 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.18;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1365,150,0 chrXIII 640741 . A G 1213 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.95;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1246,138,0 chrXIII 641090 . A G 871 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=20.74;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:904,102,0 chrXIII 641091 . A G 943 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.50;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:976,108,0 chrXIII 641272 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.31;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2247,249,0 chrXIII 641548 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.8211;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1000,117,0 chrXIII 641634 . C A 1639 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.42;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1672,177,0 chrXIII 642208 . C T 3013 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.11;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3046,324,0 chrXIII 642868 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8705;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.78;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1479,162,0 chrXIII 643060 . G C 1318 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.61;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1351,153,0 chrXIII 643657 . G A 2788 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.58;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2821,300,0 chrXIII 643894 . A G 2462 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.52;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2495,279,0 chrXIII 644030 . G A 2622 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.02;SB=-1.639e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2655,291,0 chrXIII 644055 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.39;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2496,273,0 chrXIII 644560 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2274,255,0 chrXIII 644973 . T G 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=125;Dels=0.00;FS=6.655;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.734;QD=17.03;ReadPosRankSum=1.704;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2162,240,0 chrXIII 645040 . C A 1506 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8736;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=14.07;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1539,171,0 chrXIII 645093 . A T 1908 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.52;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1941,207,0 chrXIII 645101 . T C 1894 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=16.76;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1927,213,0 chrXIII 645302 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=14.88;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1000,108,0 chrXIII 645420 . A T 1378 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.26;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1411,150,0 chrXIII 645754 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.16;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1217,132,0 chrXIII 645786 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.21;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1308,141,0 chrXIII 645859 . G T 1685 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=23.40;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1718,189,0 chrXIII 645893 . T G 907 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=16.49;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:940,105,0 chrXIII 645914 . C G 755 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=14.52;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:90:788,90,0 chrXIII 645925 . T C 755 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=14.52;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:788,90,0 chrXIII 645935 . T A 719 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=13.31;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:84:752,84,0 chrXIII 645941 . C T 722 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=13.88;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:755,81,0 chrXIII 646115 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.76;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1945,213,0 chrXIII 646166 . G T 1882 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.46;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1915,204,0 chrXIII 646181 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.44;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1770,189,0 chrXIII 646241 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.41;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1489,168,0 chrXIII 646336 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=22.97;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1480,168,0 chrXIII 646348 . A C 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=1.685;QD=21.73;ReadPosRankSum=0.890;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1641,183,0 chrXIII 646355 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.36;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1678,180,0 chrXIII 646699 . G T 439 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=12.54;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:51:472,51,0 chrXIII 646703 . C T 501 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=13.92;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,33:36:57:534,57,0 chrXIII 647164 . G T 1262 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.84;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1295,144,0 chrXIII 647171 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.89;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1249,135,0 chrXIII 647329 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=16.11;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:75:99:1241,138,0 chrXIII 647375 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.69;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1229,129,0 chrXIII 647397 . C G 948 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=13.94;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:981,111,0 chrXIII 647406 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=14.78;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1053,117,0 chrXIII 647456 . C G 1466 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9033;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=16.66;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1499,171,0 chrXIII 647615 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.30;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1393,150,0 chrXIII 647636 . A G 841 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.52;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:874,99,0 chrXIII 648168 . T A 1692 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.26;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1725,183,0 chrXIII 648335 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=106;Dels=0.00;FS=5.806;HaplotypeScore=9.2064;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.490;QD=19.92;ReadPosRankSum=2.933;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,102:106:99:2145,234,0 chrXIII 648405 . T C 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2346;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.622;QD=21.08;ReadPosRankSum=1.643;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1698,192,0 chrXIII 648575 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.93;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1320,147,0 chrXIII 648617 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.87;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2176,240,0 chrXIII 648680 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1706,195,0 chrXIII 648729 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.02;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1915,201,0 chrXIII 648809 . A G 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.525;QD=22.78;ReadPosRankSum=1.681;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1559,174,0 chrXIII 649250 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1304,138,0 chrXIII 649387 . A G 1892 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=26.28;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1925,210,0 chrXIII 649437 . C T 1196 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.00;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1229,135,0 chrXIII 649473 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.02;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1114,123,0 chrXIII 649497 . A G 1303 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.08;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1336,147,0 chrXIII 649520 . A C 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=70;Dels=0.00;FS=4.409;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.577;QD=21.36;ReadPosRankSum=1.682;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1528,168,0 chrXIII 649796 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.26;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1903,201,0 chrXIII 649834 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8677;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.23;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1591,174,0 chrXIII 649905 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.34;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1152,126,0 chrXIII 650015 . A G 694 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.28;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,34:36:81:727,81,0 chrXIII 650269 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.14;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1398,150,0 chrXIII 650714 . T C 976 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1009,114,0 chrXIII 651148 . A G 974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.208;QD=19.10;ReadPosRankSum=1.663;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:1007,111,0 chrXIII 652003 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:954,111,0 chrXIII 652186 . A G 645 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.81;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:75:678,75,0 chrXIII 652187 . G A 658 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.23;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:691,75,0 chrXIII 652277 . T C 743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.192;QD=16.51;ReadPosRankSum=1.655;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:87:776,87,0 chrXIII 652599 . T C 1248 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.80;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1281,147,0 chrXIII 652621 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=21.65;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1267,135,0 chrXIII 652690 . A C 857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.035;QD=17.49;ReadPosRankSum=1.662;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:890,99,0 chrXIII 652735 . A C 1119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.527;QD=16.22;ReadPosRankSum=1.682;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1152,129,0 chrXIII 652744 . A G 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=1.325;QD=16.82;ReadPosRankSum=1.681;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1177,132,0 chrXIII 652911 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.21;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1892,201,0 chrXIII 653063 . C A 815 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.63;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:93:848,93,0 chrXIII 653073 . C A 839 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.45;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:93:872,93,0 chrXIII 653300 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=6.748;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.805;QD=18.71;ReadPosRankSum=2.379;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1324,156,0 chrXIII 653617 . C T 891 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=14.61;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:924,102,0 chrXIII 653809 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.94;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:912,102,0 chrXIII 653832 . G A 757 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=16.46;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:46:87:790,87,0 chrXIII 654436 . A G 3873.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.676;QD=21.52;ReadPosRankSum=2.395;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:2,178:180:99:3873,429,0 chrXIII 654522 . C A 2344 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8661;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.21;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2377,258,0 chrXIII 654599 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.51;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1474,162,0 chrXIII 654806 . C A 1506 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9450;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.21;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1539,171,0 chrXIII 654902 . T C 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=85;Dels=0.00;FS=4.381;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.632;QD=17.45;ReadPosRankSum=1.691;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1516,168,0 chrXIII 654983 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.63;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1662,186,0 chrXIII 655501 . G A 2868 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.56;SB=-1.742e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2901,312,0 chrXIII 655522 . G A 2636 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.7420;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.28;SB=-1.523e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2669,300,0 chrXIII 655608 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.81;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2061,219,0 chrXIII 655922 . A G 2049 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7967;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.70;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2082,231,0 chrXIII 656101 . A T 1713 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.13;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1746,192,0 chrXIII 656131 . A G 1174 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.06;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1207,132,0 chrXIII 656137 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.30;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1175,138,0 chrXIII 657064 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.34;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1761,189,0 chrXIII 657240 . G C 823 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=14.19;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:96:856,96,0 chrXIII 657241 . C A 869 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=15.52;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:902,96,0 chrXIII 657406 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.02;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1883,201,0 chrXIII 657916 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=104;Dels=0.00;FS=5.749;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.525;QD=21.92;ReadPosRankSum=2.931;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:3,99:104:99:2313,264,0 chrXIII 658093 . G T 2856 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.8210;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.00;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2889,318,0 chrXIII 658201 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=5.073;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.247;QD=20.07;ReadPosRankSum=-0.451;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2442,266,0 chrXIII 658377 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.72;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2292,249,0 chrXIII 658812 . T C 3332.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.225;QD=21.64;ReadPosRankSum=1.665;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3332,375,0 chrXIII 659049 . G A 3609.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.56;SB=-2.041e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3609,384,0 chrXIII 659220 . A G 2919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.3356;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.092;QD=18.59;ReadPosRankSum=1.688;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,156:157:99:2952,327,0 chrXIII 659437 . C T 2753 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.57;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2786,297,0 chrXIII 659561 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1347,150,0 chrXIII 659687 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.179;QD=19.16;ReadPosRankSum=1.692;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:90:99:1757,204,0 chrXIII 659982 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.84;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1239,138,0 chrXIII 660011 . T A 1502 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.58;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1535,165,0 chrXIII 660767 . A G 1151 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.55;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1184,129,0 chrXIII 661121 . A T 1734 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.15;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1767,198,0 chrXIII 661308 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2299,246,0 chrXIII 661378 . A G 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=103;Dels=0.00;FS=8.198;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.326;QD=21.07;ReadPosRankSum=2.329;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2203,243,0 chrXIII 661638 . A C 2069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.7836;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.136;QD=19.89;ReadPosRankSum=1.053;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,101:104:99:2102,234,0 chrXIII 661676 . T C 2512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.274;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.044;QD=20.93;ReadPosRankSum=1.645;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:2545,291,0 chrXIII 661764 . G A 1843 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.71;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1876,201,0 chrXIII 661975 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=16.04;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1236,135,0 chrXIII 662259 . T C 600 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.14;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,32:35:72:633,72,0 chrXIII 662599 . A T 1110 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1143,126,0 chrXIII 662886 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=84;Dels=0.00;FS=9.331;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.933;QD=19.82;ReadPosRankSum=2.389;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:2,79:84:99:1698,189,0 chrXIII 662961 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.15;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1810,192,0 chrXIII 663000 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.91;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1706,192,0 chrXIII 663189 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.34;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1212,135,0 chrXIII 663339 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.92;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1225,129,0 chrXIII 663441 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.60;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1228,147,0 chrXIII 663474 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=17.24;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1033,114,0 chrXIII 663903 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.71;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1792,201,0 chrXIII 664122 . A C 2007 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.68;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2040,240,0 chrXIII 664467 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.03;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1379,150,0 chrXIII 664741 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.01;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1966,228,0 chrXIII 664811 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.33;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1876,207,0 chrXIII 665327 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.81;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1756,189,0 chrXIII 665349 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.47;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1643,177,0 chrXIII 665483 . T C 1643 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1676,186,0 chrXIII 665727 . C A 1499 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.04;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1532,165,0 chrXIII 665763 . C A 1854 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.72;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1887,201,0 chrXIII 665932 . A G 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.425;QD=21.80;ReadPosRankSum=1.601;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1755,201,0 chrXIII 666112 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1576,174,0 chrXIII 666667 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8900;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.87;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1543,168,0 chrXIII 667024 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.35;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2067,231,0 chrXIII 667089 . T C 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=88;Dels=0.00;FS=3.023;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.415;QD=19.83;ReadPosRankSum=2.307;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1778,198,0 chrXIII 667456 . A C 1783 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.7890;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.38;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1816,207,0 chrXIII 667511 . T C 2329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.866;QD=19.91;ReadPosRankSum=1.702;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2362,261,0 chrXIII 667766 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.4352;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.77;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2306,249,0 chrXIII 668324 . T C 1028 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.07;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1061,120,0 chrXIII 668408 . A G 595 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.83;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,29:30:75:628,75,0 chrXIII 669285 . A C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334;DP=89;Dels=0.00;FS=3.832;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.060;QD=17.57;ReadPosRankSum=1.294;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,86:89:99:1597,158,0 chrXIII 669340 . T C 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.442;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.915;QD=15.42;ReadPosRankSum=1.654;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1405,162,0 chrXIII 669355 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=14.15;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1321,150,0 chrXIII 669628 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.98;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1000,108,0 chrXIII 669658 . A T 948 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=20.61;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:981,105,0 chrXIII 669672 . T A 883 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.62;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:916,99,0 chrXIII 670228 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.28;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2170,240,0 chrXIII 670498 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.01;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2344,264,0 chrXIII 671384 . C A 1592 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.42;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1625,177,0 chrXIII 671402 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.25;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1635,180,0 chrXIII 671526 . G C 1538 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1571,174,0 chrXIII 672129 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.73;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1611,186,0 chrXIII 672421 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.49;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1709,198,0 chrXIII 672760 . A G 2827 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,127:130:99:2860,330,0 chrXIII 673042 . G A 2571 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.33;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2604,279,0 chrXIII 673147 . T A 3384.01 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.8821;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.12;SB=-1.808e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:3384,372,0 chrXIII 673402 . G A 3157 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6076;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3190,342,0 chrXIII 673803 . A G 2824 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.23;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,129:133:99:2857,318,0 chrXIII 673846 . A G 2651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.910;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.296;QD=20.87;ReadPosRankSum=1.705;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2684,312,0 chrXIII 674192 . A G 2499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=11.9890;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.200;QD=16.77;ReadPosRankSum=1.709;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,146:149:99:2532,291,0 chrXIII 674283 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.20;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1646,180,0 chrXIII 674833 . G A 789 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=16.79;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:822,90,0 chrXIII 675083 . A C 855 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.59;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:888,102,0 chrXIII 675245 . G C 1766 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.24;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1799,204,0 chrXIII 675891 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.0658;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.299;QD=22.64;ReadPosRankSum=2.402;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2388,273,0 chrXIII 675922 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.47;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2450,270,0 chrXIII 676081 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.56;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1676,189,0 chrXIII 676154 . G C 1995 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3565;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.75;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2028,222,0 chrXIII 676300 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.49;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2099,228,0 chrXIII 676414 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.357;QD=19.95;ReadPosRankSum=1.677;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1290,150,0 chrXIII 676426 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.07;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1262,138,0 chrXIII 676447 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.92;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1234,141,0 chrXIII 676599 . G C 1412 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.34;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1445,159,0 chrXIII 676801 . A G 2224 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.69;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2257,252,0 chrXIII 676883 . C G 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.34;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1000,114,0 chrXIII 676973 . G C 1624 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.65;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1657,192,0 chrXIII 676978 . A G 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.162;QD=18.64;ReadPosRankSum=2.366;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1673,186,0 chrXIII 677046 . C T 2236 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.79;SB=-1.381e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2269,249,0 chrXIII 677544 . A C 1369 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1402,156,0 chrXIII 677619 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.68;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1658,180,0 chrXIII 678210 . C T 1769 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.05;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1802,204,0 chrXIII 678500 . T C 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.224;QD=20.98;ReadPosRankSum=1.702;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2509,288,0 chrXIII 678657 . T C 1618 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.81;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1651,183,0 chrXIII 679490 . T C 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.048;QD=18.68;ReadPosRankSum=1.684;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1378,153,0 chrXIII 680063 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.31;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1106,120,0 chrXIII 680078 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.81;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1162,126,0 chrXIII 680080 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.58;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1208,135,0 chrXIII 680155 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.68;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1098,117,0 chrXIII 680258 . G T 1102 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.63;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1135,120,0 chrXIII 680349 . T C 886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.650;QD=21.10;ReadPosRankSum=1.650;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:919,105,0 chrXIII 680399 . A G 936 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.83;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:969,105,0 chrXIII 680438 . A T 1091 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.21;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1124,120,0 chrXIII 680463 . A G 885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=4.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.733;QD=21.07;ReadPosRankSum=1.650;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:918,102,0 chrXIII 680613 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.69;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1725,192,0 chrXIII 680685 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.59;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1742,186,0 chrXIII 680769 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.50;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1743,192,0 chrXIII 680823 . T C 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=70;Dels=0.00;FS=3.203;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.180;QD=19.94;ReadPosRankSum=1.682;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1429,159,0 chrXIII 680873 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.82;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1440,162,0 chrXIII 680936 . T C 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.721;QD=16.90;ReadPosRankSum=1.873;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1334,147,0 chrXIII 680940 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.67;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1271,141,0 chrXIII 680949 . A T 1235 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.83;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1268,141,0 chrXIII 681220 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.36;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:866,93,0 chrXIII 681337 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.48;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1451,156,0 chrXIII 681495 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.56;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1258,138,0 chrXIII 681830 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.388;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.030;QD=18.38;ReadPosRankSum=1.639;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1393,162,0 chrXIII 682194 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.90;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1287,144,0 chrXIII 682377 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.95;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1269,141,0 chrXIII 682560 . G A 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.344;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.798;QD=22.04;ReadPosRankSum=-1.304;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1995,225,0 chrXIII 682641 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2119,228,0 chrXIII 683069 . C G 4779.01 PASS AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.82;SB=-2.060e+03 GT:AD:DP:GQ:PL 1/1:0,218:219:99:4779,537,0 chrXIII 683655 . T C 3084 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.35;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3117,348,0 chrXIII 683958 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.33;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1994,210,0 chrXIII 684406 . A T 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.038;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.157;QD=17.59;ReadPosRankSum=2.401;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:2,100:102:99:1827,201,0 chrXIII 684407 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.02;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1835,201,0 chrXIII 685373 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=16.99;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1239,138,0 chrXIII 685585 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1112,120,0 chrXIII 685689 . T C 736 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.87;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:769,87,0 chrXIII 686040 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.25;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1706,180,0 chrXIII 686590 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.73;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1794,198,0 chrXIII 686772 . C T 1904 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9156;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.70;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1937,207,0 chrXIII 687199 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.3213;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1123,120,0 chrXIII 687331 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0269;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.22;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1306,138,0 chrXIII 687551 . T C 858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.82;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:51:99:891,102,0 chrXIII 688004 . G C 1815 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.13;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1848,207,0 chrXIII 688379 . A G 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.471;QD=17.66;ReadPosRankSum=1.667;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:969,108,0 chrXIII 688655 . A G 627 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.63;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:660,78,0 chrXIII 689079 . A C 1587 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.05;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1620,183,0 chrXIII 689462 . T A 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1575,168,0 chrXIII 690172 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1475,165,0 chrXIII 690252 . G A 1944 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1977,210,0 chrXIII 690671 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.08;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1777,189,0 chrXIII 690710 . A T 1505 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.80;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1538,168,0 chrXIII 690884 . G A 965 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.98;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:998,108,0 chrXIII 691064 . A T 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.01;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1924,207,0 chrXIII 691334 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.17;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1363,150,0 chrXIII 691745 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.68;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1588,177,0 chrXIII 691787 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.31;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1525,168,0 chrXIII 691867 . T C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.646;QD=19.58;ReadPosRankSum=1.681;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1345,156,0 chrXIII 691976 . T C 1788 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.04;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1821,201,0 chrXIII 692015 . C T 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=3.123;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=1.066;QD=18.95;ReadPosRankSum=0.888;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1568,168,0 chrXIII 692036 . A G 1109 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=72;Dels=0.00;FS=7.029;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.592;QD=15.40;ReadPosRankSum=2.379;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:2,67:72:99:1142,132,0 chrXIII 692042 . C A 1254 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.44;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1287,138,0 chrXIII 692398 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.44;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1321,141,0 chrXIII 692624 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.44;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1684,192,0 chrXIII 692846 . G A 1667 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.7520;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.73;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1700,180,0 chrXIII 692849 . C T 1547 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=16.63;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1580,171,0 chrXIII 692855 . G T 1392 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=16.57;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1425,156,0 chrXIII 692858 . A G 1271 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=16.09;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1304,144,0 chrXIII 692933 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=6.520;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.883;QD=17.99;ReadPosRankSum=2.400;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1814,210,0 chrXIII 693184 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.44;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1341,144,0 chrXIII 693249 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.68;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1625,171,0 chrXIII 693352 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.3472;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1741,198,0 chrXIII 693410 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.98;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:64:99:1312,150,0 chrXIII 693754 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.7166;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.61;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1826,195,0 chrXIII 694082 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.34;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1356,144,0 chrXIII 694175 . G T 1599 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.81;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1632,180,0 chrXIII 694193 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.13;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1701,183,0 chrXIII 694247 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.25;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1256,135,0 chrXIII 694367 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.44;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1463,168,0 chrXIII 694403 . C A 1017 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.56;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1050,114,0 chrXIII 694404 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.71;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1058,117,0 chrXIII 694601 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.61;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1406,153,0 chrXIII 694691 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=15.81;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1377,150,0 chrXIII 694961 . A G 2952 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.5112;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.87;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,132:135:99:2985,333,0 chrXIII 695009 . C A 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=122;Dels=0.00;FS=12.596;HaplotypeScore=6.8037;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-0.111;QD=16.68;ReadPosRankSum=-0.212;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2068,228,0 chrXIII 695040 . G C 981 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=10.22;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1014,117,0 chrXIII 695050 . G A 841 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=8.76;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:96:874,96,0 chrXIII 695052 . A G 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.936;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=41.49;MQ0=0;MQRankSum=-1.067;QD=8.44;ReadPosRankSum=1.697;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:869,99,0 chrXIII 695070 . T A 1126 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=10.93;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1159,129,0 chrXIII 695123 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5039;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=14.94;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1647,186,0 chrXIII 695197 . A G 2006 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.54;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2039,225,0 chrXIII 695300 . G A 2775 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.50;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2808,300,0 chrXIII 695433 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.72;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1873,210,0 chrXIII 695736 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.03;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1597,174,0 chrXIII 695793 . A G 996 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=14.87;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1029,117,0 chrXIII 695805 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.49;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1154,123,0 chrXIII 696957 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.866;QD=20.96;ReadPosRankSum=1.681;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1458,168,0 chrXIII 697269 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.29;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2056,222,0 chrXIII 697465 . T C 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.115;QD=20.29;ReadPosRankSum=1.694;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1859,207,0 chrXIII 697520 . A G 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DP=75;Dels=0.00;FS=3.259;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.385;QD=19.16;ReadPosRankSum=0.241;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,71:75:99:1470,162,0 chrXIII 697707 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.42;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1918,210,0 chrXIII 697714 . A G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=2.895;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.920;QD=19.37;ReadPosRankSum=2.393;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1718,192,0 chrXIII 697902 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6919;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.47;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2431,261,0 chrXIII 697993 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.41;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2074,234,0 chrXIII 698184 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.34;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1420,159,0 chrXIII 698195 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.18;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1184,132,0 chrXIII 698372 . C A 1180 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.88;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1213,129,0 chrXIII 698569 . A G 284 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=13.52;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:36:317,36,0 chrXIII 699056 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.81;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1063,114,0 chrXIII 700452 . T A 1629 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.72;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1662,177,0 chrXIII 700469 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.87;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1618,174,0 chrXIII 700620 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.39;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1664,180,0 chrXIII 700956 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.09;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1488,171,0 chrXIII 701244 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.03;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1395,153,0 chrXIII 701348 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.62;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1020,117,0 chrXIII 701442 . C T 960 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.33;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:993,108,0 chrXIII 701468 . A G 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.657;QD=17.37;ReadPosRankSum=1.582;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:93:832,93,0 chrXIII 701606 . T A 871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;DP=53;Dels=0.00;FS=14.597;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.327;QD=16.43;ReadPosRankSum=2.860;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:3,50:53:96:904,96,0 chrXIII 702308 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.56;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1833,201,0 chrXIII 702536 . T C 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=7.592;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.830;QD=17.53;ReadPosRankSum=2.373;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1155,129,0 chrXIII 703487 . T C 460 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=15.33;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:57:493,57,0 chrXIII 703489 . A G 419 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=14.96;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:452,51,0 chrXIII 703549 . T C 48.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.33;SB=-2.898e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:9:81,9,0 chrXIII 703588 . C T 139.13 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=4.97;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,28:28:18:172,18,0 chrXIII 703810 . T C 1394 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=21.12;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1427,159,0 chrXIII 703828 . A G 1291 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.49;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1324,147,0 chrXIII 703858 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=14.79;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1083,117,0 chrXIII 703860 . A G 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=12.618;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;MQRankSum=-1.512;QD=13.66;ReadPosRankSum=2.381;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1003,111,0 chrXIII 703913 . T G 725 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=15.76;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:758,87,0 chrXIII 703969 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=19.21;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1109,123,0 chrXIII 703990 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.84;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1182,126,0 chrXIII 704204 . A G 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.400;QD=20.94;ReadPosRankSum=1.679;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1394,153,0 chrXIII 704425 . A T 1035 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.17;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1068,114,0 chrXIII 704704 . T C 713 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.27;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:746,84,0 chrXIII 704707 . T C 732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.233;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.866;QD=18.30;ReadPosRankSum=1.646;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:84:765,84,0 chrXIII 704739 . T G 713 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=16.58;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:746,87,0 chrXIII 704858 . T G 1005 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.85;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1038,117,0 chrXIII 704983 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.13;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1639,180,0 chrXIII 705104 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.15;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1185,126,0 chrXIII 705124 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=4.5823;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.27;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1290,141,0 chrXIII 705307 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.33;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1842,204,0 chrXIII 705571 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.47;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1965,207,0 chrXIII 705665 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.80;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1696,183,0 chrXIII 705679 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.40;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1460,162,0 chrXIII 705694 . A G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=0.022;QD=14.16;ReadPosRankSum=1.642;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1123,129,0 chrXIII 705697 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=14.46;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1175,126,0 chrXIII 705940 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.21;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1549,168,0 chrXIII 706063 . A G 1004 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=16.73;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1037,114,0 chrXIII 706072 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.93;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1169,126,0 chrXIII 706102 . T A 1209 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.89;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1242,132,0 chrXIII 706357 . A G 1035 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.12;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1068,120,0 chrXIII 706368 . T G 1002 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.65;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1035,117,0 chrXIII 706399 . T G 1077 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.54;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1110,126,0 chrXIII 706495 . G C 1145 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.35;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:66:99:1178,132,0 chrXIII 706574 . A G 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=67;Dels=0.00;FS=9.810;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.534;QD=20.63;ReadPosRankSum=2.376;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1415,159,0 chrXIII 706931 . T C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.567;QD=21.46;ReadPosRankSum=1.567;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1385,156,0 chrXIII 707030 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1659,186,0 chrXIII 707180 . A T 2134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=93;Dels=0.00;FS=4.771;HaplotypeScore=12.3565;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.808;QD=22.95;ReadPosRankSum=1.694;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2167,234,0 chrXIII 707281 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1518,171,0 chrXIII 707624 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7627;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.732;QD=22.18;ReadPosRankSum=1.664;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2273,249,0 chrXIII 707837 . T C 2416 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.30;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2449,282,0 chrXIII 707917 . G A 2554 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.28;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2587,279,0 chrXIII 707980 . A G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=7.2685;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.889;QD=20.77;ReadPosRankSum=1.672;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2442,276,0 chrXIII 708061 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.62;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1544,165,0 chrXIII 708064 . C A 1438 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=19.17;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1471,156,0 chrXIII 708125 . T C 793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=4.011;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;MQRankSum=-0.459;QD=11.33;ReadPosRankSum=1.681;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,67:70:93:826,93,0 chrXIII 708130 . T C 815 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=12.16;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:93:848,93,0 chrXIII 708165 . A C 938 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=13.79;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:971,108,0 chrXIII 708177 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=12.28;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:954,108,0 chrXIII 708242 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.96;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1685,186,0 chrXIII 708248 . A T 1728 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.38;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1761,189,0 chrXIII 708336 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.74;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1511,162,0 chrXIII 708449 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=23.88;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1275,135,0 chrXIII 708515 . A G 1396 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.27;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1429,159,0 chrXIII 708659 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.87;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1170,129,0 chrXIII 708669 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.93;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1184,129,0 chrXIII 708859 . C G 916 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:949,105,0 chrXIII 709047 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.16;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1307,144,0 chrXIII 709130 . C G 1642 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.89;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1675,195,0 chrXIII 709221 . A G 1376 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1409,165,0 chrXIII 709259 . A C 1314 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1347,147,0 chrXIII 709343 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.65;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1003,108,0 chrXIII 709360 . A G 987 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=15.18;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1020,114,0 chrXIII 709368 . G A 938 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=1.135;QD=15.90;ReadPosRankSum=1.613;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:971,102,0 chrXIII 709401 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0265;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=13.65;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:934,105,0 chrXIII 709513 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.3275;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.21;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1654,177,0 chrXIII 709549 . G C 1439 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.48;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1472,162,0 chrXIII 709740 . T C 1170 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.67;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1203,138,0 chrXIII 709763 . T C 967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.247;QD=19.73;ReadPosRankSum=1.662;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1000,111,0 chrXIII 709860 . A G 1576 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.01;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1609,177,0 chrXIII 709938 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.45;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1237,132,0 chrXIII 709940 . A C 1163 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.10;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1196,135,0 chrXIII 709983 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.30;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1534,168,0 chrXIII 710039 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.14;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1640,177,0 chrXIII 710067 . G T 1453 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.06;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1486,159,0 chrXIII 710099 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.97;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:59:99:1270,138,0 chrXIII 710133 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.59;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1227,138,0 chrXIII 710137 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.67;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1153,129,0 chrXIII 710293 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.02;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1975,222,0 chrXIII 710381 . T C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.367;QD=19.62;ReadPosRankSum=1.680;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1328,153,0 chrXIII 710402 . G A 1182 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.06;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1215,129,0 chrXIII 710531 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=17.18;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1150,129,0 chrXIII 710880 . T A 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=0.689;QD=16.31;ReadPosRankSum=1.690;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1387,153,0 chrXIII 710897 . A C 1219 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=17.17;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1252,147,0 chrXIII 710949 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.83;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1877,201,0 chrXIII 711019 . T G 1848 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.76;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:89:99:1881,213,0 chrXIII 711139 . T C 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.00;FS=3.337;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.130;QD=20.07;ReadPosRankSum=1.682;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1458,162,0 chrXIII 711226 . T C 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=3.369;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.687;QD=14.92;ReadPosRankSum=1.677;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1003,111,0 chrXIII 711246 . G T 1142 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.04;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1175,126,0 chrXIII 711523 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.89;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1644,180,0 chrXIII 711575 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.97;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1703,183,0 chrXIII 711626 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.19;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1343,153,0 chrXIII 711644 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.30;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1261,144,0 chrXIII 711677 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.188;QD=18.36;ReadPosRankSum=2.362;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1575,177,0 chrXIII 712043 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.92;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:830,93,0 chrXIII 712271 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1581,174,0 chrXIII 712385 . A C 1197 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.95;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1230,135,0 chrXIII 712539 . G C 2020 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.96;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2053,228,0 chrXIII 712702 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.58;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1453,165,0 chrXIII 712889 . G T 1334 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.9059;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.87;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1367,147,0 chrXIII 713045 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.51;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1236,138,0 chrXIII 713054 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.10;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1119,123,0 chrXIII 713074 . T A 1021 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.60;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1054,117,0 chrXIII 713537 . A G 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.939;QD=17.56;ReadPosRankSum=1.690;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1526,171,0 chrXIII 713562 . C A 1302 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.00;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1335,141,0 chrXIII 713573 . A G 1065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.199;QD=16.14;ReadPosRankSum=1.572;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1098,123,0 chrXIII 713731 . A C 1368 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.37;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1401,162,0 chrXIII 713762 . T C 1234 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.90;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1267,141,0 chrXIII 713803 . T G 1060 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=14.93;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1093,126,0 chrXIII 713811 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.60;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1245,138,0 chrXIII 714035 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.89;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1390,150,0 chrXIII 714046 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.58;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1445,162,0 chrXIII 714399 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=8.502;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.328;QD=20.37;ReadPosRankSum=2.231;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1642,183,0 chrXIII 715059 . T A 2252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=4.019;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-1.358;QD=20.11;ReadPosRankSum=1.670;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2285,249,0 chrXIII 715089 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.03;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1872,201,0 chrXIII 715098 . A G 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=2.997;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=0.262;QD=16.06;ReadPosRankSum=2.336;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1767,198,0 chrXIII 715145 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=15.06;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1449,162,0 chrXIII 715457 . C T 2084 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6877;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.43;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2117,225,0 chrXIII 715619 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.59;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2129,228,0 chrXIII 715643 . T C 2023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.095;QD=21.99;ReadPosRankSum=1.694;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2056,228,0 chrXIII 715919 . T C 780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=5.315;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.034;QD=15.00;ReadPosRankSum=1.664;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:90:813,90,0 chrXIII 715953 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.9433;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.46;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1270,144,0 chrXIII 715971 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.82;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1619,177,0 chrXIII 716317 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.18;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1150,123,0 chrXIII 716342 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=16.14;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1050,117,0 chrXIII 716386 . T C 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=1.463;QD=16.36;ReadPosRankSum=0.280;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1260,144,0 chrXIII 716541 . G T 1414 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.20;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1447,159,0 chrXIII 716798 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.70;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1834,198,0 chrXIII 717629 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.5452;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.85;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1409,156,0 chrXIII 718241 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.33;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1249,132,0 chrXIII 718269 . T G 1228 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.81;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1261,144,0 chrXIII 718679 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.55;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1059,114,0 chrXIII 719499 . A T 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.289;QD=21.78;ReadPosRankSum=1.617;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1340,147,0 chrXIII 719516 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.39;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1195,129,0 chrXIII 719811 . A G 2184 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.22;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2217,252,0 chrXIII 720386 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=5.283;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.791;QD=23.65;ReadPosRankSum=1.689;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1949,216,0 chrXIII 720435 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.78;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1888,204,0 chrXIII 720657 . C G 1590 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.20;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1623,186,0 chrXIII 721068 . T C 2279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.9914;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.460;QD=23.26;ReadPosRankSum=1.697;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2312,239,0 chrXIII 721103 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.0457;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.52;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1884,216,0 chrXIII 721309 . A T 2503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.175;QD=19.25;ReadPosRankSum=1.705;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2536,288,0 chrXIII 721409 . A C 1687 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.54;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1720,198,0 chrXIII 721557 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.14;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2177,249,0 chrXIII 721563 . A G 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.321;QD=18.27;ReadPosRankSum=1.668;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2006,225,0 chrXIII 721591 . G T 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.134;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.437;QD=20.42;ReadPosRankSum=1.570;SB=-1.424e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2238,237,0 chrXIII 721694 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.46;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1852,198,0 chrXIII 721923 . G A 2229 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.83;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2262,249,0 chrXIII 722192 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.8167;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.98;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2891,309,0 chrXIII 722400 . C G 1501 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.76;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1534,168,0 chrXIII 722430 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=19.67;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1764,189,0 chrXIII 722436 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.05;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1459,156,0 chrXIII 722446 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=17.33;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1506,171,0 chrXIII 722565 . G A 3599.01 PASS AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.22;SB=-1.925e+03 GT:AD:DP:GQ:PL 1/1:0,161:162:99:3599,381,0 chrXIII 723405 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.19;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1931,213,0 chrXIII 723430 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.08;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1841,201,0 chrXIII 723720 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.80;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1742,192,0 chrXIII 723721 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.36;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1911,198,0 chrXIII 723828 . A G 1779 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.45;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1812,210,0 chrXIII 723996 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.84;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1950,216,0 chrXIII 724434 . T C 1140 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.76;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1173,129,0 chrXIII 724793 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.80;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:990,114,0 chrXIII 724837 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1131,120,0 chrXIII 726417 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1379,156,0 chrXIII 726654 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.97;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1371,147,0 chrXIII 726963 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.99;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1506,165,0 chrXIII 727049 . G C 1423 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3217;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.94;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1456,165,0 chrXIII 727057 . A G 1254 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.592;QD=15.48;ReadPosRankSum=1.688;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1287,147,0 chrXIII 727058 . C T 1330 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=6.7906;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.02;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1363,153,0 chrXIII 727107 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=14.37;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1298,147,0 chrXIII 727303 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=11.9645;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.07;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2132,225,0 chrXIII 727431 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.36;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2314,255,0 chrXIII 727646 . G A 2048 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.90;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2081,219,0 chrXIII 727763 . A G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=23.65;ReadPosRankSum=1.686;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1807,201,0 chrXIII 728589 . G T 805 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.30;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:838,90,0 chrXIII 729020 . G C 1239 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.77;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1272,141,0 chrXIII 729284 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.92;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1660,186,0 chrXIII 729587 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.33;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1436,162,0 chrXIII 729654 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1372,150,0 chrXIII 729711 . T C 1159 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.64;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1192,138,0 chrXIII 729828 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0188;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.00;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1356,147,0 chrXIII 729862 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.44;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1105,117,0 chrXIII 729873 . T G 854 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.08;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:887,102,0 chrXIII 729976 . A G 1070 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.45;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1103,123,0 chrXIII 730384 . A G 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.536;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.767;QD=18.06;ReadPosRankSum=1.688;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1460,165,0 chrXIII 730533 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.54;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1433,162,0 chrXIII 730842 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.52;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1948,210,0 chrXIII 732373 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.667;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.675;QD=22.49;ReadPosRankSum=1.674;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1360,150,0 chrXIII 732395 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.27;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1592,177,0 chrXIII 732586 . T C 1796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.557;QD=22.73;ReadPosRankSum=1.688;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1829,207,0 chrXIII 732688 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.54;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1842,204,0 chrXIII 733313 . G A 2363 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.11;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2396,255,0 chrXIII 734324 . A C 2069 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.52;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2102,234,0 chrXIII 734330 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.62;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,114:117:99:2095,237,0 chrXIII 734392 . T C 2042 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.45;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2075,234,0 chrXIII 734558 . A G 2416 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.01;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2449,273,0 chrXIII 734679 . C T 3324.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.24;SB=-1.860e+03 GT:AD:DP:GQ:PL 1/1:0,141:143:99:3324,357,0 chrXIII 734873 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.42;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1875,204,0 chrXIII 735107 . T C 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=4.376;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.852;QD=21.68;ReadPosRankSum=1.677;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1442,156,0 chrXIII 735170 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.86;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1885,207,0 chrXIII 735372 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.89;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1203,132,0 chrXIII 735876 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.74;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1711,195,0 chrXIII 736200 . A T 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=5.444;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.128;QD=15.94;ReadPosRankSum=2.850;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1420,153,0 chrXIII 736201 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.21;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1311,147,0 chrXIII 736854 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.38;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1038,114,0 chrXIII 737093 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.4118;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.70;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1400,150,0 chrXIII 737201 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1354,150,0 chrXIII 737273 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.63;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1616,171,0 chrXIII 737381 . T G 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.204;QD=21.56;ReadPosRankSum=1.699;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2297,255,0 chrXIII 737389 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.56;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2254,252,0 chrXIII 737462 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.32;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1653,177,0 chrXIII 737485 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.97;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1551,165,0 chrXIII 737552 . A G 1064 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.46;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1097,123,0 chrXIII 737651 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=6.803;HaplotypeScore=12.0551;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.580;QD=20.56;ReadPosRankSum=1.390;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1904,210,0 chrXIII 737933 . C G 1067 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.34;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1100,129,0 chrXIII 739012 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.52;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1475,162,0 chrXIII 739150 . G A 995 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.77;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1028,114,0 chrXIII 740188 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.85;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1868,198,0 chrXIII 740191 . G A 1817 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.97;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1850,198,0 chrXIII 740218 . G T 2171 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.68;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2204,234,0 chrXIII 740301 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.2428;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.99;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1628,177,0 chrXIII 740517 . G C 1592 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4702;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.30;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1625,177,0 chrXIII 740583 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.9846;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.54;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1887,219,0 chrXIII 741162 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.91;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:974,105,0 chrXIII 741316 . T G 1043 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.06;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1076,123,0 chrXIII 741504 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.32;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1551,174,0 chrXIII 741779 . A G 2258 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.71;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2291,255,0 chrXIII 741880 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.13;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1422,153,0 chrXIII 742124 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1218,135,0 chrXIII 742214 . A G 1348 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1381,150,0 chrXIII 742337 . T G 1402 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.11;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1435,156,0 chrXIII 742343 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0595;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=12.26;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1198,135,0 chrXIII 742433 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.69;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1895,210,0 chrXIII 742757 . G C 1834 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.93;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1867,210,0 chrXIII 742863 . A G 2854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=125;Dels=0.00;FS=10.658;HaplotypeScore=5.6717;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.738;QD=22.83;ReadPosRankSum=2.410;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2887,324,0 chrXIII 742901 . T C 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5062;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.725;QD=23.44;ReadPosRankSum=2.406;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2682,300,0 chrXIII 742946 . A G 2094 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.04;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2127,237,0 chrXIII 743222 . C T 3091 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.62;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3124,339,0 chrXIII 743279 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=15.4560;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.50;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2197,237,0 chrXIII 743500 . C A 1903 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.38;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1936,210,0 chrXIII 743691 . G C 1919 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1952,216,0 chrXIII 743742 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7024;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.45;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2472,267,0 chrXIII 743928 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.8143;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.40;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1889,201,0 chrXIII 744231 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.42;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2320,255,0 chrXIII 744270 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5442;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.32;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1699,186,0 chrXIII 744435 . T A 1310 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.79;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1343,150,0 chrXIII 744471 . T C 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=4.205;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.241;QD=18.41;ReadPosRankSum=1.688;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1506,165,0 chrXIII 744735 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.73;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1203,132,0 chrXIII 744855 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.93;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2007,225,0 chrXIII 744882 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.47;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2123,225,0 chrXIII 744933 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=15.13;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1380,153,0 chrXIII 744937 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=16.28;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1466,153,0 chrXIII 744949 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=15.64;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1378,150,0 chrXIII 744975 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=16.55;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1456,156,0 chrXIII 744999 . A G 1199 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.448;QD=13.32;ReadPosRankSum=1.693;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1232,138,0 chrXIII 745005 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=13.02;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1127,120,0 chrXIII 745236 . G T 1435 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.10;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1468,156,0 chrXIII 745377 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.98;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2331,249,0 chrXIII 745968 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=20.58;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2112,234,0 chrXIII 745976 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.85;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2118,228,0 chrXIII 745979 . G T 2134 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6660;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=21.13;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2167,231,0 chrXIII 746043 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.77;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1786,192,0 chrXIII 746079 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.55;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1705,186,0 chrXIII 746108 . A G 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.163;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.836;QD=19.57;ReadPosRankSum=1.673;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1168,135,0 chrXIII 746227 . T A 2396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.329;DP=104;Dels=0.00;FS=3.501;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.151;QD=23.04;ReadPosRankSum=0.050;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2429,244,0 chrXIII 746305 . T A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=25.04;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3456,369,0 chrXIII 746448 . T C 2145 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1189;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.03;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2178,243,0 chrXIII 746667 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7721;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.94;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2525,285,0 chrXIII 747051 . T C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=85;Dels=0.00;FS=4.367;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.056;QD=17.82;ReadPosRankSum=1.648;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,81:85:99:1548,180,0 chrXIII 747252 . C T 2072 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.77;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2105,228,0 chrXIII 747330 . T C 2234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.192;QD=20.50;ReadPosRankSum=1.604;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2267,252,0 chrXIII 747492 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1773,189,0 chrXIII 747983 . T C 622 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.81;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:72:655,72,0 chrXIII 748010 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.38;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:602,63,0 chrXIII 748055 . C T 683 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.97;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:716,75,0 chrXIII 748748 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1362,150,0 chrXIII 748940 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.80;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1510,162,0 chrXIII 749978 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.7157;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.58;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1749,189,0 chrXIII 750116 . A G 1072 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.62;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1105,126,0 chrXIII 750175 . A G 1129 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.81;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1162,129,0 chrXIII 750242 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8332;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.54;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1368,150,0 chrXIII 750743 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0662;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=16.36;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1489,171,0 chrXIII 750755 . T A 1276 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=15.95;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1309,147,0 chrXIII 750779 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=15.58;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1233,141,0 chrXIII 750782 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.11;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1241,135,0 chrXIII 751055 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.9819;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.79;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1901,204,0 chrXIII 751426 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.57;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1730,183,0 chrXIII 751891 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.79;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1301,141,0 chrXIII 752227 . T G 877 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.87;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:910,105,0 chrXIII 752515 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.24;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1634,174,0 chrXIII 752521 . T G 1391 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.87;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1424,156,0 chrXIII 752985 . C A 81.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=10.19;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:114,12,0 chrXIII 753037 . T C 307 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.47;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:39:340,39,0 chrXIII 753060 . A T 436 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.80;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:469,51,0 chrXIII 753079 . T C 383 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.16;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:416,45,0 chrXIII 753430 . G A 1313 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.45;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1346,144,0 chrXIII 753994 . C G 1939 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.55;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1972,219,0 chrXIII 754594 . T C 1371 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.04;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1404,156,0 chrXIII 754630 . T C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.411;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.210;QD=19.65;ReadPosRankSum=1.685;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1487,165,0 chrXIII 754660 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.117;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.126;QD=19.54;ReadPosRankSum=1.689;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1596,186,0 chrXIII 754796 . A T 1678 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.32;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1711,186,0 chrXIII 754798 . G C 1652 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.60;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1685,183,0 chrXIII 754868 . A T 1644 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.29;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1677,183,0 chrXIII 754943 . C A 1645 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.23;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1678,177,0 chrXIII 755483 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.14;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1682,180,0 chrXIII 755501 . C T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=88;Dels=0.00;FS=4.130;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.457;QD=19.36;ReadPosRankSum=1.693;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1737,164,0 chrXIII 755723 . C T 1971 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.90;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2004,219,0 chrXIII 755756 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.62;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1917,207,0 chrXIII 755780 . T C 1718 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=18.28;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1751,198,0 chrXIII 756198 . A T 1698 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=22.34;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1731,186,0 chrXIII 756230 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.37;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1479,159,0 chrXIII 756564 . C G 582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;MQRankSum=-1.516;QD=12.12;ReadPosRankSum=1.588;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:69:615,69,0 chrXIII 756565 . A C 583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;MQRankSum=-1.660;QD=12.15;ReadPosRankSum=1.660;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:69:616,69,0 chrXIII 756577 . T C 549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.938;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;MQRankSum=-1.599;QD=10.56;ReadPosRankSum=1.666;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:66:582,66,0 chrXIII 756600 . T C 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.87;MQ0=0;MQRankSum=1.347;QD=9.85;ReadPosRankSum=1.668;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:63:565,63,0 chrXIII 756615 . T C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=0.25;SB=-5.638e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:44,6,0 chrXIII 756630 . T A 614 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=12.53;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:647,69,0 chrXIII 756660 . A T 657 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=15.64;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:690,75,0 chrXIII 756710 . A G 599 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=39;Dels=0.00;FS=2.657;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.516;QD=15.36;ReadPosRankSum=2.815;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:3,35:39:72:632,72,0 chrXIII 756713 . G T 604 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.32;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:637,69,0 chrXIII 756845 . T C 318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=23;Dels=0.00;FS=14.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.273;QD=13.83;ReadPosRankSum=2.128;SB=-7.801e+01 GT:AD:DP:GQ:PL 1/1:2,21:23:39:351,39,0 chrXIII 756979 . A T 152.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;DP=28;Dels=0.00;FS=8.101;HaplotypeScore=7.8644;MLEAC=2;MLEAF=1.00;MQ=31.91;MQ0=0;MQRankSum=-0.729;QD=5.43;ReadPosRankSum=2.304;SB=-1.561e+02 GT:AD:DP:GQ:PL 1/1:6,22:28:21:185,21,0 chrXIII 756991 . A T 59.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;DP=42;Dels=0.05;FS=6.899;HaplotypeScore=2.7217;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=0;MQRankSum=-0.930;QD=1.41;ReadPosRankSum=-4.130;SB=-5.022e+01 GT:AD:DP:GQ:PL 0/1:23,17:40:10:89,0,10 chrXIII 757086 . A T 1610 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.68;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1643,177,0 chrXIII 757200 . T C 2559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.433;QD=24.37;ReadPosRankSum=2.914;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2592,279,0 chrXIII 757281 . T C 3405.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.3242;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.608;QD=22.55;ReadPosRankSum=3.297;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:4,147:151:99:3405,378,0 chrXIII 757555 . T C 3672.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=167;Dels=0.00;FS=4.824;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.545;QD=21.99;ReadPosRankSum=1.608;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:1,166:167:99:3672,417,0 chrXIII 757815 . G C 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.82;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1896,210,0 chrXIII 757882 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.54;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2110,240,0 chrXIII 757906 . C T 2285 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.58;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2318,249,0 chrXIII 757948 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.061;DP=139;Dels=0.00;FS=11.120;HaplotypeScore=12.8807;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.937;QD=18.24;ReadPosRankSum=2.308;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:2,137:139:99:2569,288,0 chrXIII 758017 . A T 2543 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=15.4732;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=17.91;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2576,276,0 chrXIII 758053 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.18;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2033,228,0 chrXIII 758083 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.84;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1974,225,0 chrXIII 758185 . C T 899 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=15.77;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:932,105,0 chrXIII 758197 . T G 652 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=13.87;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:685,78,0 chrXIII 758200 . T C 641 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=14.57;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:674,81,0 chrXIII 758254 . C T 715 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.03;MQ0=0;QD=17.87;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:748,81,0 chrXIII 758256 . T C 680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=5.714;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;MQRankSum=-1.733;QD=16.59;ReadPosRankSum=1.648;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:713,81,0 chrXIII 758281 . C G 853 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=15.23;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:886,99,0 chrXIII 758293 . A C 733 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=13.09;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:766,90,0 chrXIII 758299 . C T 738 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=13.67;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:771,84,0 chrXIII 758302 . C T 676 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=12.75;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:709,81,0 chrXIII 758318 . C T 617 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=12.59;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:72:650,72,0 chrXIII 758437 . C T 3185 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.77;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3218,345,0 chrXIII 758475 . G A 2204 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=17.35;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2237,249,0 chrXIII 758488 . T C 1988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;MQRankSum=-1.167;QD=16.99;ReadPosRankSum=2.408;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2021,228,0 chrXIII 758494 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=17.01;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1904,216,0 chrXIII 758527 . C T 1307 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=16.54;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1340,144,0 chrXIII 758567 . T C 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-0.064;QD=16.85;ReadPosRankSum=1.668;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:943,108,0 chrXIII 758570 . G C 964 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=17.85;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:997,114,0 chrXIII 758927 . A G 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=118;Dels=0.01;FS=27.797;HaplotypeScore=22.4794;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=1.934;QD=19.77;ReadPosRankSum=3.753;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:5,112:117:99:2366,267,0 chrXIII 759149 . G T 1748 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.04;FS=0.000;HaplotypeScore=7.9130;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=16.97;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1781,195,0 chrXIII 759350 . A G 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.315;QD=16.03;ReadPosRankSum=1.627;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,65:71:99:1171,135,0 chrXIII 759582 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=13.0001;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.30;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1845,195,0 chrXIII 759891 . C A 1623 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.08;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1656,180,0 chrXIII 759962 . G A 2457 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.14;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2490,267,0 chrXIII 760211 . T A 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=3.358;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.899;QD=20.27;ReadPosRankSum=1.699;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2141,231,0 chrXIII 760322 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.7398;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.216;QD=16.99;ReadPosRankSum=1.695;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1630,189,0 chrXIII 760664 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.86;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1999,219,0 chrXIII 760721 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.39;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1933,225,0 chrXIII 760816 . A C 1869 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.54;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1902,210,0 chrXIII 760898 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.79;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2278,252,0 chrXIII 761015 . T C 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.69;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1942,219,0 chrXIII 761279 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.85;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1673,186,0 chrXIII 761300 . T C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=3.031;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.577;QD=19.90;ReadPosRankSum=2.388;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1605,177,0 chrXIII 761318 . T A 1609 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.28;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1642,183,0 chrXIII 761436 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=16.51;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1271,135,0 chrXIII 761468 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=15.54;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1152,129,0 chrXIII 761480 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=7.401;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.702;QD=15.52;ReadPosRankSum=2.381;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1166,135,0 chrXIII 761608 . A C 1646 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.10;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1679,183,0 chrXIII 761798 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.22;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1032,120,0 chrXIII 761801 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.57;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1052,114,0 chrXIII 761973 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.95;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1754,186,0 chrXIII 762006 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.06;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2108,225,0 chrXIII 762346 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=16.33;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:964,102,0 chrXIII 762356 . T C 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=5.099;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.283;QD=16.15;ReadPosRankSum=1.543;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:921,102,0 chrXIII 762442 . C A 1339 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.69;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1372,150,0 chrXIII 762467 . G C 1531 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.69;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1564,171,0 chrXIII 762692 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=23.53;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1774,192,0 chrXIII 762774 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.91;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1128,120,0 chrXIII 762779 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.71;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1078,117,0 chrXIII 762794 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=15.92;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1052,114,0 chrXIII 762822 . C T 629 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=11.23;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:662,69,0 chrXIII 762840 . A C 595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;MQRankSum=-0.976;QD=10.82;ReadPosRankSum=1.669;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:72:628,72,0 chrXIII 762871 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=15.51;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:793,87,0 chrXIII 763289 . A G 1024 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=8.4198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.90;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1057,120,0 chrXIII 763672 . A C 884 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:917,102,0 chrXIII 763864 . G C 1382 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.59;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1415,159,0 chrXIII 763944 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.80;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:927,99,0 chrXIII 764227 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.264;QD=20.91;ReadPosRankSum=1.685;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1580,177,0 chrXIII 764392 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.57;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1327,141,0 chrXIII 764401 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.56;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1305,147,0 chrXIII 764686 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.0840;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=24.76;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1915,207,0 chrXIII 765021 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.92;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1752,186,0 chrXIII 765038 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.61;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1522,162,0 chrXIII 765055 . T G 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.577;QD=16.36;ReadPosRankSum=1.688;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1309,150,0 chrXIII 765109 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=15.65;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1801,189,0 chrXIII 765121 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=4.084;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.303;QD=15.97;ReadPosRankSum=1.699;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:1710,189,0 chrXIII 765291 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.04;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2325,249,0 chrXIII 765316 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.63;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2282,255,0 chrXIII 765393 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.27;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1769,192,0 chrXIII 765542 . T C 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=5.971;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.896;QD=20.07;ReadPosRankSum=1.653;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1799,204,0 chrXIII 765648 . G T 1771 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.84;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1804,195,0 chrXIII 765682 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.16;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1662,183,0 chrXIII 765773 . C T 1245 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=23.49;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1278,138,0 chrXIII 765790 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.33;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1328,147,0 chrXIII 765853 . C T 1190 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.52;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1223,138,0 chrXIII 765900 . G T 829 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.84;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:862,90,0 chrXIII 765912 . T C 748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=3.745;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.578;QD=16.26;ReadPosRankSum=1.655;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:90:781,90,0 chrXIII 766029 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.668;QD=20.43;ReadPosRankSum=1.668;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1136,126,0 chrXIII 766042 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.45;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1178,126,0 chrXIII 766215 . T C 1273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.170;QD=22.73;ReadPosRankSum=2.274;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1306,144,0 chrXIII 766244 . A T 1209 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=23.25;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1242,132,0 chrXIII 766245 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.83;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1168,129,0 chrXIII 766444 . T G 866 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.24;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:899,102,0 chrXIII 766566 . T C 1068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=57;Dels=0.00;FS=12.950;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.537;QD=18.74;ReadPosRankSum=2.872;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:3,52:57:99:1101,123,0 chrXIII 766609 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.04;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1135,126,0 chrXIII 766728 . A G 980 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.00;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1013,111,0 chrXIII 766746 . A T 611 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=14.55;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:72:644,72,0 chrXIII 766756 . C T 611 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9629;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=13.28;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:644,69,0 chrXIII 766771 . T C 532 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.1797;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=10.86;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:66:565,66,0 chrXIII 766803 . C T 638 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=14.18;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:671,72,0 chrXIII 766878 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.87;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1066,114,0 chrXIII 766972 . A T 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.577;QD=20.40;ReadPosRankSum=1.686;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1563,168,0 chrXIII 767001 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.27;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1401,153,0 chrXIII 767080 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.81;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1469,162,0 chrXIII 767539 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.04;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1480,162,0 chrXIII 767542 . A G 1441 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.01;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1474,162,0 chrXIII 768019 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.51;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:956,108,0 chrXIII 768108 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.80;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:51:99:1094,120,0 chrXIII 768215 . G A 62.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.179;DP=54;Dels=0.00;FS=4.162;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;MQRankSum=0.839;QD=1.16;ReadPosRankSum=-3.785;SB=2.49 GT:AD:DP:GQ:PL 1/1:48,6:54:12:95,12,0 chrXIII 768258 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=19.33;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:922,99,0 chrXIII 768268 . A T 867 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=20.16;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:900,99,0 chrXIII 768296 . T A 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.000;QD=23.77;ReadPosRankSum=1.646;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:984,105,0 chrXIII 768463 . C T 942 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=19.22;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:975,105,0 chrXIII 768494 . G A 745 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=19.61;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:778,84,0 chrXIII 768514 . C T 754 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.74;MQ0=0;QD=20.38;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:787,84,0 chrXIII 768904 . C T 95.26 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=2.57;SB=-1.713e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:15:128,15,0 chrXIII 768939 . C T 589 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=13.70;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:622,69,0 chrXIII 768951 . G A 605 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=12.60;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:69:638,69,0 chrXIII 768968 . T G 728 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=13.24;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:761,87,0 chrXIII 769131 . A G 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=7.167;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=-0.430;QD=21.41;ReadPosRankSum=1.704;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2731,306,0 chrXIII 769141 . A G 2723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=6.955;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.140;QD=21.61;ReadPosRankSum=1.676;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2756,306,0 chrXIII 769148 . G A 2642 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=21.14;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2675,303,0 chrXIII 769211 . C T 1510 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=17.98;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1543,165,0 chrXIII 769249 . G T 795 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=151.5640;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=12.82;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:93:828,93,0 chrXIII 769274 . T C 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.2997;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;MQRankSum=-2.068;QD=11.30;ReadPosRankSum=2.098;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:982,108,0 chrXIII 769315 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=17.57;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1685,183,0 chrXIII 769401 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=21.53;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2380,252,0 chrXIII 769403 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.84;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2235,246,0 chrXIII 769428 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=20.39;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2235,243,0 chrXIII 769442 . T G 1971 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=18.08;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2004,228,0 chrXIII 769459 . T A 1986 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0363;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=17.58;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2019,219,0 chrXIII 769493 . T C 2479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=125;Dels=0.01;FS=12.536;HaplotypeScore=98.1046;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=0.309;QD=19.83;ReadPosRankSum=2.927;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2512,279,0 chrXIII 769627 . A G 2865 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=12.7981;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=22.04;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2898,327,0 chrXIII 769653 . A T 2333 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=21.60;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2366,258,0 chrXIII 769700 . T C 1940 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.80;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1973,228,0 chrXIII 769720 . T C 1618 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=16.68;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1651,183,0 chrXIII 769743 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=17.04;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1771,192,0 chrXIII 769778 . T A 1338 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=0;MQRankSum=-1.062;QD=14.39;ReadPosRankSum=1.658;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1371,156,0 chrXIII 769779 . T A 1420 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=0.254;QD=15.11;ReadPosRankSum=2.396;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:1453,159,0 chrXIII 769782 . A T 1529 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=5.288;HaplotypeScore=3.0842;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=-0.778;QD=15.60;ReadPosRankSum=1.697;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1562,171,0 chrXIII 769826 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=18.37;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1907,219,0 chrXIII 769839 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=17.98;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1921,207,0 chrXIII 769882 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.60;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1577,174,0 chrXIII 769891 . C G 1388 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=14.02;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1421,159,0 chrXIII 769897 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=12.00;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1185,135,0 chrXIII 769921 . G C 1031 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;QD=10.52;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1064,126,0 chrXIII 769952 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=10.68;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1058,126,0 chrXIII 769962 . T A 1076 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=10.15;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1109,123,0 chrXIII 769971 . A G 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=108;Dels=0.00;FS=2.395;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-0.822;QD=9.70;ReadPosRankSum=3.376;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:4,104:108:99:1081,126,0 chrXIII 769998 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.43;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1288,141,0 chrXIII 770091 . A T 1483 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.24;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1516,165,0 chrXIII 770092 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=88;Dels=0.00;FS=6.273;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;MQRankSum=-0.378;QD=16.32;ReadPosRankSum=2.338;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1469,165,0 chrXIII 770167 . G A 2062 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=17.33;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2095,228,0 chrXIII 770245 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=19.79;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1616,177,0 chrXIII 770272 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=18.47;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1086,120,0 chrXIII 770320 . T C 532 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.57;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:66:565,66,0 chrXIII 770331 . A G 469 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.44;MQ0=0;QD=10.42;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:60:502,60,0 chrXIII 770342 . T C 459 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=10.93;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:57:492,57,0 chrXIII 770343 . C T 455 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=10.11;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:488,57,0 chrXIII 770345 . T G 503 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=10.70;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:536,63,0 chrXIII 770435 . C A 1420 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.45;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1453,162,0 chrXIII 770511 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=19.55;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1910,201,0 chrXIII 770533 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=17.97;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1668,177,0 chrXIII 770543 . G A 1419 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=15.42;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1452,159,0 chrXIII 770585 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.5750;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=18.41;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1285,138,0 chrXIII 770694 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.58;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1630,192,0 chrXIII 770730 . T C 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-1.267;QD=19.49;ReadPosRankSum=1.648;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1631,186,0 chrXIII 770733 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.48;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1753,192,0 chrXIII 770744 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.88;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1678,192,0 chrXIII 771046 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=6.620;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=0.138;QD=18.28;ReadPosRankSum=2.400;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:2,96:100:99:1861,213,0 chrXIII 771058 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.68;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1976,216,0 chrXIII 771109 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.85;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2236,237,0 chrXIII 771220 . T C 2148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.452;QD=21.48;ReadPosRankSum=1.662;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2181,243,0 chrXIII 771259 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.199;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.400;QD=19.24;ReadPosRankSum=1.622;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1861,207,0 chrXIII 771391 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.94;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1983,210,0 chrXIII 771409 . A G 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-1.398;QD=20.28;ReadPosRankSum=1.649;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1716,192,0 chrXIII 771556 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.88;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1842,204,0 chrXIII 771631 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.00;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1439,165,0 chrXIII 771742 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2945;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.09;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1227,138,0 chrXIII 771775 . T C 968 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=17.29;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1001,108,0 chrXIII 771796 . A G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.524;QD=14.80;ReadPosRankSum=2.325;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:2,57:61:99:936,105,0 chrXIII 771895 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.982;QD=18.95;ReadPosRankSum=1.675;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1189,132,0 chrXIII 771982 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1705,186,0 chrXIII 772120 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.64;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:956,111,0 chrXIII 772204 . A G 633 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=15.07;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:666,75,0 chrXIII 772205 . C T 666 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=15.86;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:75:699,75,0 chrXIII 772207 . G A 610 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=14.88;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:643,72,0 chrXIII 772216 . G A 613 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=14.26;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:646,69,0 chrXIII 772241 . C T 488 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=11.35;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:521,57,0 chrXIII 772252 . A G 472 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=10.49;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:57:505,57,0 chrXIII 772261 . A G 411 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=10.02;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:51:444,51,0 chrXIII 772282 . A G 399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;MQRankSum=-0.433;QD=9.97;ReadPosRankSum=1.646;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:48:432,48,0 chrXIII 772297 . A G 689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=0.177;QD=14.06;ReadPosRankSum=1.662;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:81:722,81,0 chrXIII 772333 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.31;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:832,90,0 chrXIII 772453 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.52;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:970,108,0 chrXIII 772562 . G A 478 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=16.48;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:57:511,57,0 chrXIII 772565 . A G 418 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.58;MQ0=0;QD=14.93;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:54:451,54,0 chrXIII 772578 . A G 502 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=17.93;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:63:535,63,0 chrXIII 772660 . T G 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267;DP=15;Dels=0.00;FS=5.219;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;MQRankSum=0.000;QD=2.86;ReadPosRankSum=2.933;SB=-6.080e+01 GT:AD:DP:GQ:PL 1/1:6,9:15:9:75,9,0 chrXIII 772662 . G C 40.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=2.73;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,9:15:9:73,9,0 chrXIII 772718 . A G 841 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:874,96,0 chrXIII 772763 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1085,123,0 chrXIII 772812 . T A 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.000;QD=19.98;ReadPosRankSum=1.646;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:872,99,0 chrXIII 772883 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.07;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1429,153,0 chrXIII 773055 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.72;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1575,183,0 chrXIII 773268 . C T 2207 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.99;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2240,243,0 chrXIII 773415 . C T 2196 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.74;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2229,243,0 chrXIII 773437 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.7845;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.11;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2231,246,0 chrXIII 773634 . A G 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.424;QD=19.18;ReadPosRankSum=1.697;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1932,216,0 chrXIII 773689 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.66;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1710,180,0 chrXIII 773727 . C T 1344 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.92;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1377,147,0 chrXIII 774011 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=8.65;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:63:569,63,0 chrXIII 774331 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=22.01;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1750,198,0 chrXIII 774688 . T A 1497 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=21.39;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1530,165,0 chrXIII 774696 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=20.11;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1300,138,0 chrXIII 774716 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=68.6221;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=18.12;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1084,117,0 chrXIII 774763 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.42;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:991,111,0 chrXIII 774827 . T A 1195 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.43;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1228,132,0 chrXIII 775321 . C T 813 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=5.5612;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:90:846,90,0 chrXIII 775426 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.52;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1114,120,0 chrXIII 775628 . A T 1489 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.22;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1522,165,0 chrXIII 775737 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.217;QD=20.61;ReadPosRankSum=1.689;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1682,189,0 chrXIII 775955 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=75;Dels=0.00;FS=9.314;HaplotypeScore=7.2369;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.345;QD=20.96;ReadPosRankSum=2.253;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1605,177,0 chrXIII 776036 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.271;QD=17.45;ReadPosRankSum=1.607;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1481,174,0 chrXIII 776237 . A G 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=3.069;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=2.061;QD=20.03;ReadPosRankSum=2.320;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1555,174,0 chrXIII 776411 . G T 2068 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.48;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2101,228,0 chrXIII 776870 . C T 3164 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.82;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,144:145:99:3197,345,0 chrXIII 776909 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.99;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2210,243,0 chrXIII 777163 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.29;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2103,234,0 chrXIII 777456 . A G 2048 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.27;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2081,231,0 chrXIII 777532 . C G 2220 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.98;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2253,255,0 chrXIII 777554 . T A 2332 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1233;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.28;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2365,255,0 chrXIII 777831 . G A 2186 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.43;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2219,246,0 chrXIII 777970 . A G 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.919;QD=16.46;ReadPosRankSum=3.338;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:1284,138,0 chrXIII 777975 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.47;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1381,147,0 chrXIII 778264 . T C 777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.523;QD=23.55;ReadPosRankSum=1.628;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:90:810,90,0 chrXIII 778513 . C T 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.733;QD=23.73;ReadPosRankSum=0.674;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:99:911,99,0 chrXIII 778647 . A G 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.780;QD=16.76;ReadPosRankSum=1.646;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:81:720,81,0 chrXIII 778671 . A G 737 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.55;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:770,84,0 chrXIII 778752 . C T 1157 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1190,132,0 chrXIII 779586 . A T 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=22.9614;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.801;QD=18.13;ReadPosRankSum=1.629;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1248,138,0 chrXIII 780034 . T A 1336 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.56;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1369,150,0 chrXIII 780100 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.12;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1562,165,0 chrXIII 780241 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.56;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1370,147,0 chrXIII 780339 . T A 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.119;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.4512;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.637;QD=18.05;ReadPosRankSum=1.685;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1369,156,0 chrXIII 780517 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.24;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1966,219,0 chrXIII 780712 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.331;QD=19.23;ReadPosRankSum=1.682;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1360,153,0 chrXIII 780946 . G T 1805 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.01;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:82:99:1838,198,0 chrXIII 781016 . C G 2164 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.16;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2197,240,0 chrXIII 781048 . A G 1746 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.82;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1779,207,0 chrXIII 781324 . G A 2355 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.66;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2388,267,0 chrXIII 781351 . C G 2051 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.53;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2084,237,0 chrXIII 781447 . A G 2217 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.17;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2250,252,0 chrXIII 782228 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.11;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2243,240,0 chrXIII 782267 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.563;QD=19.12;ReadPosRankSum=1.689;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1563,174,0 chrXIII 782556 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.39;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2450,273,0 chrXIII 782896 . A G 2264 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.16;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2297,252,0 chrXIII 783184 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1688,180,0 chrXIII 783214 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.68;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1686,189,0 chrXIII 783361 . A G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.564;QD=19.44;ReadPosRankSum=1.615;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,88:93:99:1841,204,0 chrXIII 783779 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1374,147,0 chrXIII 783841 . C A 1919 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.40;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1952,210,0 chrXIII 783958 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.2552;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.19;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1597,174,0 chrXIII 784138 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.02;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1420,156,0 chrXIII 784210 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.98;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2071,234,0 chrXIII 784266 . G C 1979 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.28;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2012,225,0 chrXIII 784313 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.99;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1895,201,0 chrXIII 784561 . C T 2339 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.26;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2372,258,0 chrXIII 784576 . T C 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.729;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.881;QD=20.08;ReadPosRankSum=1.673;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2403,279,0 chrXIII 784796 . G C 1164 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.07;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1197,132,0 chrXIII 785057 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1299,144,0 chrXIII 785216 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.92;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1431,153,0 chrXIII 785293 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3293;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.03;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1377,150,0 chrXIII 785416 . G A 928 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:961,102,0 chrXIII 785489 . T C 1194 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1227,138,0 chrXIII 785591 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.57;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1694,180,0 chrXIII 785941 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.21;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1843,198,0 chrXIII 785980 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.73;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1554,165,0 chrXIII 786415 . T A 1541 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.01;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1574,168,0 chrXIII 787278 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.22;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1590,174,0 chrXIII 787310 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.25;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:982,108,0 chrXIII 787531 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.09;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1467,156,0 chrXIII 787876 . C G 984 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.36;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1017,114,0 chrXIII 787897 . T C 951 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.13;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:984,114,0 chrXIII 788573 . G T 1054 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1087,117,0 chrXIII 788656 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.78;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1222,135,0 chrXIII 788743 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.23;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1473,165,0 chrXIII 788848 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.62;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1006,108,0 chrXIII 788915 . A G 949 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:982,108,0 chrXIII 789063 . C T 611 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.71;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:72:644,72,0 chrXIII 789071 . G T 590 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.85;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:69:623,69,0 chrXIII 789101 . G A 272 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.43;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:305,33,0 chrXIII 789267 . G T 404 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.44;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:437,48,0 chrXIII 789347 . G A 642 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:72:675,72,0 chrXIII 790001 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=17.36;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2029,225,0 chrXIII 790067 . G A 3786.01 PASS AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.95;SB=-1.720e+03 GT:AD:DP:GQ:PL 1/1:0,165:165:99:3786,417,0 chrXIII 790319 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=9.9977;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.25;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2240,249,0 chrXIII 790421 . C T 2508 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.6894;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.39;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2541,267,0 chrXIII 790520 . A G 2738 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.63;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2771,312,0 chrXIII 790550 . T C 1910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=3.501;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.959;QD=18.54;ReadPosRankSum=1.631;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1943,225,0 chrXIII 790559 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.30;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1901,207,0 chrXIII 790664 . A T 1958 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7544;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.40;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1991,216,0 chrXIII 790712 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.44;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1505,162,0 chrXIII 790727 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.87;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1424,153,0 chrXIII 790832 . C T 1768 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=16.52;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1801,198,0 chrXIII 790870 . T C 1708 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.57;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1741,195,0 chrXIII 791636 . T C 1710 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.37;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1743,195,0 chrXIII 791843 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1743,183,0 chrXIII 791894 . A G 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.357;QD=19.62;ReadPosRankSum=1.677;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1269,141,0 chrXIII 791978 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.82;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1582,168,0 chrXIII 792077 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.06;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1253,135,0 chrXIII 792254 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1175,129,0 chrXIII 793043 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.02;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1915,219,0 chrXIII 793076 . T G 1696 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1729,201,0 chrXIII 794088 . T C 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.589;QD=21.29;ReadPosRankSum=1.698;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2247,255,0 chrXIII 794751 . T A 885 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.35;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:918,102,0 chrXIII 794755 . G T 935 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.33;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:968,102,0 chrXIII 794820 . T A 1209 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.39;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1242,132,0 chrXIII 794978 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.76;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:603,72,0 chrXIII 795009 . T A 551 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=16.70;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:63:584,63,0 chrXIII 795946 . T C 2727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.554;QD=23.31;ReadPosRankSum=1.703;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2760,309,0 chrXIII 796038 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.21;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1727,192,0 chrXIII 796069 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=23.46;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1558,171,0 chrXIII 796280 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.01;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1785,198,0 chrXIII 796431 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=22.04;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1201,132,0 chrXIII 796432 . T C 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.098;QD=22.38;ReadPosRankSum=1.667;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1219,132,0 chrXIII 796446 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=24.36;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1470,156,0 chrXIII 796580 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=25.69;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1754,189,0 chrXIII 796648 . T C 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.690;QD=21.71;ReadPosRankSum=1.563;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1813,201,0 chrXIII 796811 . G T 1726 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.80;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1759,192,0 chrXIII 796868 . A T 1124 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.6021;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.79;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1157,126,0 chrXIII 796877 . A T 779 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=72;Dels=0.00;FS=6.849;HaplotypeScore=4.6538;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=0.634;QD=10.82;ReadPosRankSum=2.107;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:90:812,90,0 chrXIII 796879 . T C 740 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DP=77;Dels=0.00;FS=9.933;HaplotypeScore=3.7630;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.614;QD=9.61;ReadPosRankSum=1.974;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:3,73:77:90:773,90,0 chrXIII 796885 . A G 935 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=81;Dels=0.00;FS=3.066;HaplotypeScore=10.8611;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=0.329;QD=11.54;ReadPosRankSum=1.688;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:968,111,0 chrXIII 796957 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.43;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2199,249,0 chrXIII 796998 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.1745;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.59;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2022,225,0 chrXIII 797041 . A T 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.757;QD=19.51;ReadPosRankSum=1.698;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2062,216,0 chrXIII 797048 . T C 1893 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.03;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1926,213,0 chrXIII 797146 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.69;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1688,192,0 chrXIII 797223 . A C 1723 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.76;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1756,195,0 chrXIII 797362 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.44;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1490,168,0 chrXIII 797379 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-1.498;QD=16.18;ReadPosRankSum=1.639;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1263,141,0 chrXIII 797401 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=15.37;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1109,126,0 chrXIII 797417 . C T 1118 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=5.5493;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=14.91;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1151,123,0 chrXIII 797456 . T G 1614 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=90;Dels=0.00;FS=2.916;HaplotypeScore=12.0929;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.266;QD=17.93;ReadPosRankSum=2.394;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,86:90:99:1647,186,0 chrXIII 797563 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.33;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2187,249,0 chrXIII 797587 . A G 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=9.893;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.857;QD=20.91;ReadPosRankSum=2.401;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2166,243,0 chrXIII 797644 . A G 815 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.30;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:848,99,0 chrXIII 797666 . T C 595 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=13.84;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:628,72,0 chrXIII 797688 . G A 877 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=13.70;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:910,99,0 chrXIII 798060 . G C 960 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.45;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:993,111,0 chrXIII 798063 . T C 933 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.66;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:966,108,0 chrXIII 798090 . T C 564 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=11.75;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:66:597,66,0 chrXIII 798447 . T A 1383 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=22.67;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1416,162,0 chrXIII 798450 . C G 1330 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=23.33;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1363,150,0 chrXIII 798485 . T G 1041 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=23.66;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:99:1074,120,0 chrXIII 798550 . A G 217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;MQRankSum=-1.736;QD=15.50;ReadPosRankSum=1.240;SB=-1.549e+02 GT:AD:DP:GQ:PL 1/1:1,13:14:30:250,30,0 chrXIII 798554 . G A 150.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=11.54;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:21:183,21,0 chrXIII 798562 . T C 68.51 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.85;SB=-2.251e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:101,12,0 chrXIII 798566 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.53;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:54,6,0 chrXIII 798568 . C A 21.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.42;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,9:9:6:53,6,0 chrXIII 798577 . T C 51.97 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.72;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:9:84,9,0 chrXIII 798586 . C T 219.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.53;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:27:252,27,0 chrXIII 798592 . T G 215.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.75;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:248,27,0 chrXIII 798593 . T G 214.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.70;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:27:247,27,0 chrXIII 798601 . A G 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.18;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:257,30,0 chrXIII 798610 . T A 235 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:268,30,0 chrXIII 798611 . A G 235 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:30:268,30,0 chrXIII 798628 . T C 213 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.68;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:246,30,0 chrXIII 798629 . G A 214 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.73;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:247,30,0 chrXIII 798631 . C T 217 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.86;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:250,30,0 chrXIII 798632 . A G 212 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.64;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:245,30,0 chrXIII 798637 . G T 262 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:295,30,0 chrXIII 798643 . G A 246 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.18;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:279,30,0 chrXIII 798679 . C T 280 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.33;SB=-8.692e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:36:313,36,0 chrXIII 798685 . C G 365 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.21;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:398,45,0 chrXIII 798688 . A G 377 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.08;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:410,45,0 chrXIII 798691 . C T 336 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.44;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:42:369,42,0 chrXIII 798697 . G T 327 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.58;SB=-7.066e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:42:360,42,0 chrXIII 798700 . T A 384 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.00;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:45:417,45,0 chrXIII 798712 . A G 423 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.27;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:51:456,51,0 chrXIII 798715 . G A 428 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.46;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:51:461,51,0 chrXIII 798730 . G A 467 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.68;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:54:500,54,0 chrXIII 798736 . C T 449 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.27;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:482,54,0 chrXIII 798737 . G A 478 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.38;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:511,54,0 chrXIII 798739 . C A 477 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.35;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:510,54,0 chrXIII 798749 . C T 419 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.45;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:48:452,48,0 chrXIII 798754 . G A 346 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.16;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:42:379,42,0 chrXIII 798766 . A G 344 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=10.12;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:42:377,42,0 chrXIII 798800 . C T 278 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=8.69;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:33:311,33,0 chrXIII 798814 . C T 273 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=10.50;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:33:306,33,0 chrXIII 798839 . G T 293 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=13.95;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:36:326,36,0 chrXIII 798847 . C T 261 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=13.74;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:33:294,33,0 chrXIII 798853 . T G 224 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=14.00;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:257,30,0 chrXIII 798856 . T G 198.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=15.23;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:231,27,0 chrXIII 798859 . C T 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=17.12;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:187,21,0 chrXIII 798860 . A T 161.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=17.90;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:194,21,0 chrXIII 798864 . G T 157.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=17.45;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:190,21,0 chrXIII 798871 . A G 95.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=0.742;QD=13.61;ReadPosRankSum=0.742;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:15:128,15,0 chrXIII 798874 . C T 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=16.54;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:132,15,0 chrXIII 798877 . T C 96.26 SnpCluster AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=16.04;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:129,15,0 chrXIII 798880 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXIII 798881 . T C 13.94 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=4.65;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:45,6,0 chrXIII 798883 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:50,6,0 chrXIII 798887 . T G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.62;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrXIII 798889 . C T 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:50,6,0 chrXIII 798890 . A C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXIII 798895 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXIII 798898 . C A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.27;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:50,6,0 chrXIII 800908 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrXIII 800909 . G C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:48,6,0 chrXIII 800911 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrXIII 800912 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:49,6,0 chrXIII 800914 . G C 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrXIII 800923 . A G 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=5.95;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:49,6,0 chrXIII 800944 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=1.32;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:47,6,0 chrXIII 800947 . T A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=1.49;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrXIII 800953 . G A 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=1.49;SB=-1.772e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:49,6,0 chrXIII 800956 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=1.06;SB=-1.773e+00 GT:AD:DP:GQ:PL 1/1:0,14:14:6:46,6,0 chrXIII 800968 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=0.84;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,19:19:6:47,6,0 chrXIII 800971 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=0.90;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,21:21:6:50,6,0 chrXIII 800974 . C T 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=0.90;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:51,6,0 chrXIII 800977 . A G 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=0.77;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,22:22:6:48,6,0 chrXIII 800992 . C T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;QD=0.54;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,33:33:6:49,6,0 chrXIII 801004 . G A 220.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=5.37;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,41:41:27:253,27,0 chrXIII 801008 . G T 277 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=6.60;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:310,33,0 chrXIII 801010 . A G 269 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=6.40;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:33:302,33,0 chrXIII 801013 . G A 279 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=6.34;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:33:312,33,0 chrXIII 801020 . C T 281 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=6.53;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,43:43:33:314,33,0 chrXIII 801025 . A T 271 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=6.02;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,45:45:33:304,33,0 chrXIII 801031 . A T 276 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.87;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,47:47:33:309,33,0 chrXIII 801058 . A G 267 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.56;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:300,33,0 chrXIII 801070 . C T 472 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.14;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:54:505,54,0 chrXIII 801073 . T C 296 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.43;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:36:329,36,0 chrXIII 801074 . A G 281 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.11;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:36:314,36,0 chrXIII 801076 . C T 300 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.52;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:36:333,36,0 chrXIII 801077 . T G 291 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.627;QD=6.19;ReadPosRankSum=1.659;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:1,46:47:36:324,36,0 chrXIII 801082 . T C 309 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.693;QD=6.18;ReadPosRankSum=1.663;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:1,49:50:39:342,39,0 chrXIII 801088 . C T 269 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.38;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,50:50:33:302,33,0 chrXIII 801097 . A G 217 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.17;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:250,30,0 chrXIII 801106 . T C 233 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.55;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:266,30,0 chrXIII 801109 . A G 218 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.19;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:30:251,30,0 chrXIII 801115 . C T 243 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.52;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,44:44:30:276,30,0 chrXIII 801118 . C A 239 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.29;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:30:272,30,0 chrXIII 801120 . A T 185.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.87;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:218,24,0 chrXIII 801124 . G A 232 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.95;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,39:39:30:265,30,0 chrXIII 801136 . C A 231.01 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=5.78;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:264,27,0 chrXIII 801144 . T A 230 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=4.79;SB=-1.520e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:30:263,30,0 chrXIII 801157 . A G 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=3.01;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:138,15,0 chrXIII 801158 . T G 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=3.01;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:138,15,0 chrXIII 801159 . T C 99.26 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=2.84;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,35:35:15:132,15,0 chrXIII 801163 . G A 94.26 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=2.30;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:127,15,0 chrXIII 801172 . C T 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=1.27;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:83,9,0 chrXIII 801173 . G C 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=1.84;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,40:40:12:106,12,0 chrXIII 801176 . T G 76.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=-0.343;QD=1.63;ReadPosRankSum=2.345;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:2,45:47:12:109,12,0 chrXIII 801181 . C T 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.22;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:46:15:135,15,0 chrXIII 801187 . T C 108.26 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=2.30;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,47:47:15:141,15,0 chrXIII 801193 . G C 106.26 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.36;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:15:139,15,0 chrXIII 801194 . A T 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.34;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:15:138,15,0 chrXIII 801195 . A C 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.29;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:15:136,15,0 chrXIII 801196 . C T 105.26 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.34;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,45:45:15:138,15,0 chrXIII 801218 . G A 75.51 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.14;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,66:66:12:108,12,0 chrXIII 801221 . A G 103.26 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.59;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,65:65:15:136,15,0 chrXIII 801226 . G A 102.26 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.50;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,68:68:15:135,15,0 chrXIII 801229 . A G 104.26 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.49;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,70:70:15:137,15,0 chrXIII 801235 . T A 77.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.016;QD=1.19;ReadPosRankSum=2.892;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:3,62:65:12:110,12,0 chrXIII 801244 . C T 170.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=2.62;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:21:203,21,0 chrXIII 801247 . A G 151.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=2.32;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,65:65:21:184,21,0 chrXIII 801254 . C T 167.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=2.49;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,67:67:21:200,21,0 chrXIII 801273 . A G 214.01 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=3.34;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,64:64:27:247,27,0 chrXIII 801280 . A G 191.01 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=3.54;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:27:224,27,0 chrXIII 801282 . A C 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=3.69;SB=-2.802e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:27:232,27,0 chrXIII 801283 . T A 199.01 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=3.55;SB=-7.202e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:27:232,27,0 chrXIII 801284 . G A 203.01 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=3.63;SB=-7.202e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:27:236,27,0 chrXIII 801311 . G A 587 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=10.87;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:66:620,66,0 chrXIII 801345 . A T 1156 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=18.95;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1189,126,0 chrXIII 801381 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=19.31;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1578,168,0 chrXIII 801493 . T C 2857 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=21.81;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2890,321,0 chrXIII 801657 . T C 996 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.13;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1029,117,0 chrXIII 801696 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=23.16;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1353,141,0 chrXIII 801732 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.76;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1317,144,0 chrXIII 801754 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.49;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1300,138,0 chrXIII 801760 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.69;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1293,144,0 chrXIII 801808 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.13;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1121,120,0 chrXIII 801823 . C A 1190 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=18.31;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1223,135,0 chrXIII 801852 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.98;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1527,174,0 chrXIII 801876 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=16.44;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1661,186,0 chrXIII 801885 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.03;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1736,192,0 chrXIII 801921 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.96;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1780,189,0 chrXIII 802071 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.14;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1745,189,0 chrXIII 802119 . C T 1541 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.82;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1574,168,0 chrXIII 802161 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.42;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1725,186,0 chrXIII 802188 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.63;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1742,195,0 chrXIII 802329 . A C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=5.351;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.338;QD=16.65;ReadPosRankSum=2.913;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1382,159,0 chrXIII 802356 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.40;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1852,201,0 chrXIII 802432 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.795;QD=22.98;ReadPosRankSum=1.691;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1986,222,0 chrXIII 802461 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.46;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1506,168,0 chrXIII 802543 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=75;Dels=0.00;FS=6.082;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=0.257;QD=20.63;ReadPosRankSum=2.906;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:3,72:75:99:1580,174,0 chrXIII 802566 . C A 1714 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=22.26;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1747,189,0 chrXIII 802644 . A G 1488 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.21;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1521,171,0 chrXIII 802701 . T A 2062 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.71;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2095,231,0 chrXIII 802825 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.75;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1631,174,0 chrXIII 802829 . T C 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=-0.458;QD=18.57;ReadPosRankSum=2.292;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1500,171,0 chrXIII 802854 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.251;DP=78;Dels=0.00;FS=5.036;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-1.461;QD=15.08;ReadPosRankSum=3.205;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:4,74:78:99:1209,135,0 chrXIII 802876 . G T 1050 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=12.80;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1083,117,0 chrXIII 802880 . C T 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;MQRankSum=1.299;QD=14.11;ReadPosRankSum=-1.126;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1162,123,0 chrXIII 802912 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=12.48;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1081,117,0 chrXIII 802921 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=13.11;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1095,117,0 chrXIII 802960 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=15.02;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1265,144,0 chrXIII 802966 . A T 1009 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=12.61;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1042,117,0 chrXIII 802989 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-0.424;QD=13.76;ReadPosRankSum=1.661;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1381,159,0 chrXIII 803013 . G A 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.857;QD=14.10;ReadPosRankSum=1.452;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1457,143,0 chrXIII 803021 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=15.45;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1671,177,0 chrXIII 803149 . T C 2710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.334;DP=128;Dels=0.00;FS=12.678;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-1.346;QD=21.17;ReadPosRankSum=3.306;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:4,123:128:99:2743,309,0 chrXIII 803211 . T C 2326 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.95;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2359,267,0 chrXIII 803470 . G A 2330 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.44;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2363,261,0 chrXIII 803536 . T G 2051 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.36;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2084,234,0 chrXIII 803680 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.73;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1277,141,0 chrXIII 803905 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.34;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2338,246,0 chrXIII 804006 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.38;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1406,156,0 chrXIII 804103 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.86;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1259,141,0 chrXIII 804397 . C A 1153 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.02;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1186,132,0 chrXIII 804400 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.38;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1180,132,0 chrXIII 804770 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.58;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1334,150,0 chrXIII 804774 . A T 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=-0.329;QD=17.05;ReadPosRankSum=1.688;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1380,150,0 chrXIII 804798 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=16.68;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1618,174,0 chrXIII 804802 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=16.19;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1668,183,0 chrXIII 804869 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.63;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1710,198,0 chrXIII 804888 . T A 1666 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.09;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1699,183,0 chrXIII 804970 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.42;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1412,150,0 chrXIII 804991 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.00;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1353,144,0 chrXIII 805136 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=21.25;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1542,171,0 chrXIII 805204 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=19.15;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1833,204,0 chrXIII 805213 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=93.2856;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=18.52;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1866,201,0 chrXIII 805270 . C A 2285 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.20;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2318,255,0 chrXIII 805324 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.48;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1719,198,0 chrXIII 805419 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.83;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1845,210,0 chrXIII 805436 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=21.45;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1813,195,0 chrXIII 805455 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=22.21;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1899,216,0 chrXIII 805482 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3364;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.13;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1845,207,0 chrXIII 805521 . C T 1508 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.66;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1541,171,0 chrXIII 805587 . C T 2079 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.62;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2112,225,0 chrXIII 805724 . C T 2564 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.91;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2597,279,0 chrXIII 806068 . G T 1711 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.77;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1744,186,0 chrXIII 806118 . A G 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9440;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.451;QD=19.16;ReadPosRankSum=2.352;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,99:102:99:1987,225,0 chrXIII 806214 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.69;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1999,225,0 chrXIII 806439 . T A 1001 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=15.64;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1034,111,0 chrXIII 806445 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=16.55;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1059,117,0 chrXIII 806492 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.95;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1074,120,0 chrXIII 806559 . T C 862 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.24;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:895,99,0 chrXIII 807366 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=19.56;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1246,141,0 chrXIII 807375 . G A 1247 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.48;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1280,141,0 chrXIII 807420 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.477;QD=17.20;ReadPosRankSum=1.682;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1220,132,0 chrXIII 807432 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=16.65;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1065,123,0 chrXIII 807457 . T C 1081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=6.220;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.163;QD=15.90;ReadPosRankSum=1.681;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1114,123,0 chrXIII 807579 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=24.06;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1886,201,0 chrXIII 807595 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.12;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1714,192,0 chrXIII 807655 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=21.29;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1736,186,0 chrXIII 807742 . A G 679 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=12.12;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:81:712,81,0 chrXIII 807743 . T G 700 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=12.73;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:81:733,81,0 chrXIII 807908 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.89;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1196,132,0 chrXIII 807915 . C G 1172 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.31;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1205,135,0 chrXIII 808003 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.54;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1409,156,0 chrXIII 808186 . C A 850 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=34.6569;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=17.00;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:883,93,0 chrXIII 808382 . G C 1670 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=21.69;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1703,186,0 chrXIII 808449 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=4.500;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;MQRankSum=-0.726;QD=22.92;ReadPosRankSum=1.676;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1477,162,0 chrXIII 808933 . G A 202.01 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=5.18;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:27:235,27,0 chrXIII 809106 . G A 1795 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=20.40;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1828,201,0 chrXIII 809126 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=19.22;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1532,168,0 chrXIII 809198 . A G 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;MQRankSum=0.693;QD=19.98;ReadPosRankSum=1.663;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1032,114,0 chrXIII 809204 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=21.04;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1064,114,0 chrXIII 809254 . G A 666 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=18.50;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:699,75,0 chrXIII 809473 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.45;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1567,165,0 chrXIII 809562 . T C 1332 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.045;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3273;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.964;QD=21.84;ReadPosRankSum=2.369;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1365,153,0 chrXIII 809908 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.84;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2370,255,0 chrXIII 810076 . A G 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=77;Dels=0.00;FS=3.129;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.609;QD=20.38;ReadPosRankSum=1.685;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,73:77:99:1602,183,0 chrXIII 810085 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.48;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1689,186,0 chrXIII 810415 . A T 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.688;DP=79;Dels=0.00;FS=4.663;HaplotypeScore=3.3092;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.513;QD=23.16;ReadPosRankSum=-0.373;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1863,201,0 chrXIII 810963 . C A 1362 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.41;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1395,153,0 chrXIII 811161 . A G 2213 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=3.039;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.432;QD=23.29;ReadPosRankSum=2.345;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:2246,246,0 chrXIII 811183 . G A 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.297;DP=100;Dels=0.00;FS=3.936;HaplotypeScore=4.8594;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.487;QD=20.12;ReadPosRankSum=0.297;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2045,201,0 chrXIII 811262 . G C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.464;DP=113;Dels=0.00;FS=6.214;HaplotypeScore=7.6908;MLEAC=1;MLEAF=0.500;MQ=53.32;MQ0=0;MQRankSum=0.790;QD=0.10;ReadPosRankSum=-5.689;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,13:113:41:41,0,364 chrXIII 811591 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.08;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1118,129,0 chrXIII 811677 . A G 345 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3894;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=5.15;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:42:378,42,0 chrXIII 811691 . T C 519 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=7.11;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:63:552,63,0 chrXIII 811756 . A G 1324 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=15.76;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1357,150,0 chrXIII 812113 . C G 1223 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.47;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1256,141,0 chrXIII 812580 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=84;Dels=0.00;FS=8.934;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.668;QD=19.10;ReadPosRankSum=2.361;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1637,192,0 chrXIII 812787 . T A 2534 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7094;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.60;SB=-1.391e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2567,273,0 chrXIII 813019 . G A 2319 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.85;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2352,258,0 chrXIII 813178 . A G 2062 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1446;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.27;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2095,231,0 chrXIII 813199 . A G 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.958;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.543;QD=20.63;ReadPosRankSum=1.664;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2158,243,0 chrXIII 813408 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.281;QD=17.68;ReadPosRankSum=1.704;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2208,258,0 chrXIII 813547 . A G 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=94;Dels=0.00;FS=2.972;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.834;QD=19.10;ReadPosRankSum=2.344;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:2,91:94:99:1828,204,0 chrXIII 813634 . A G 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.711;QD=19.57;ReadPosRankSum=1.659;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1892,213,0 chrXIII 814155 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.21;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1242,135,0 chrXIII 814204 . A G 888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.361;QD=18.50;ReadPosRankSum=1.660;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:921,105,0 chrXIII 814438 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.29;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2006,213,0 chrXIII 814574 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.23;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1636,174,0 chrXIII 814898 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.84;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1933,225,0 chrXIII 815081 . T G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.665;QD=20.51;ReadPosRankSum=2.374;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1366,162,0 chrXIII 815125 . A G 1414 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.75;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1447,162,0 chrXIII 815338 . A G 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.640;QD=22.10;ReadPosRankSum=1.694;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2066,228,0 chrXIII 815589 . A C 985 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.89;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1018,117,0 chrXIII 815882 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.84;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1358,153,0 chrXIII 815904 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=21.58;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1177,126,0 chrXIII 815905 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.25;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1138,123,0 chrXIII 815979 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.84;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1346,147,0 chrXIII 816131 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.82;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1532,171,0 chrXIII 816209 . A G 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-0.564;QD=16.57;ReadPosRankSum=1.693;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1508,165,0 chrXIII 816212 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.110;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-1.142;QD=15.62;ReadPosRankSum=1.653;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1423,159,0 chrXIII 816290 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.03;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1547,165,0 chrXIII 816350 . A T 1485 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.2566;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.95;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1518,165,0 chrXIII 816512 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.39;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1379,147,0 chrXIII 816521 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.25;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1284,135,0 chrXIII 816738 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1331,147,0 chrXIII 817301 . C A 1659 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.70;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1692,183,0 chrXIII 817457 . T C 1070 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.98;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1103,123,0 chrXIII 817520 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.24;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1126,123,0 chrXIII 817541 . C A 957 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.40;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:990,105,0 chrXIII 817706 . A C 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=4.905;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.312;QD=21.18;ReadPosRankSum=1.697;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,98:101:99:2172,243,0 chrXIII 817903 . T C 2258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7055;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.706;QD=20.91;ReadPosRankSum=1.668;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2291,258,0 chrXIII 818165 . G A 2351 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.92;SB=-1.358e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2384,258,0 chrXIII 818167 . T C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=121;Dels=0.00;FS=10.319;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.735;QD=18.26;ReadPosRankSum=2.821;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:3,115:121:99:2242,249,0 chrXIII 818204 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=16.52;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2016,237,0 chrXIII 818294 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.04;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2342,270,0 chrXIII 818309 . G T 2339 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.27;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2372,261,0 chrXIII 818360 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.5988;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.41;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1929,207,0 chrXIII 818478 . A G 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.165;QD=16.75;ReadPosRankSum=1.669;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:1875,210,0 chrXIII 818504 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.82;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1868,201,0 chrXIII 818546 . C T 1945 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=7.8529;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.45;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1978,210,0 chrXIII 818591 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=16.74;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1908,204,0 chrXIII 818759 . G C 2321 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.69;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2354,264,0 chrXIII 818815 . T A 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.232;QD=21.32;ReadPosRankSum=1.699;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2272,255,0 chrXIII 818970 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.79;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1811,198,0 chrXIII 819018 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=14.0179;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.43;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2026,219,0 chrXIII 819065 . C G 2146 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.35;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2179,243,0 chrXIII 819114 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.15;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1533,174,0 chrXIII 819141 . A C 1370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.524;QD=13.56;ReadPosRankSum=1.697;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1403,162,0 chrXIII 819393 . A T 3037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.8496;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.517;QD=23.54;ReadPosRankSum=1.678;SB=-1.480e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:3070,330,0 chrXIII 819515 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8297;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.21;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1965,210,0 chrXIII 819699 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.79;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1574,177,0 chrXIII 819776 . T C 1476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=4.717;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.866;QD=18.22;ReadPosRankSum=1.646;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1509,171,0 chrXIII 819989 . C T 2194 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.13;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2227,240,0 chrXIII 820184 . C A 2588 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.3945;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2621,282,0 chrXIII 820241 . C T 2449 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.93;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2482,273,0 chrXIII 820411 . T C 2657 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.92;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2690,309,0 chrXIII 820717 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7722;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.90;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1639,180,0 chrXIII 820753 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=15.68;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1899,204,0 chrXIII 821443 . T C 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=53;Dels=0.00;FS=3.096;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.849;QD=19.40;ReadPosRankSum=2.354;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:2,49:53:99:1061,120,0 chrXIII 821470 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.80;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1260,141,0 chrXIII 821494 . T C 1129 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.21;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1162,132,0 chrXIII 822331 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=4.309;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.732;QD=19.39;ReadPosRankSum=1.693;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1778,207,0 chrXIII 822465 . G T 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.394;QD=18.06;ReadPosRankSum=0.787;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1622,171,0 chrXIII 822473 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=16.73;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1589,174,0 chrXIII 822625 . A G 172.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=13.1052;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=0.598;QD=2.82;ReadPosRankSum=1.669;SB=-4.904e+01 GT:AD:DP:GQ:PL 1/1:1,54:61:24:205,24,0 chrXIII 822844 . A G 1303 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.36;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1336,150,0 chrXIII 823023 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=83;Dels=0.00;FS=7.616;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.685;QD=20.06;ReadPosRankSum=2.267;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:2,79:83:99:1698,192,0 chrXIII 823029 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.13;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1766,198,0 chrXIII 824526 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.42;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1602,174,0 chrXIII 824589 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.89;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2102,237,0 chrXIII 824598 . A G 2138 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.17;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2171,240,0 chrXIII 824640 . T C 2584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=5.093;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.385;QD=20.51;ReadPosRankSum=1.705;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2617,291,0 chrXIII 824795 . C A 1609 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.49;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1642,189,0 chrXIII 824813 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=14.93;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1168,135,0 chrXIII 824825 . C T 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=1.107;QD=13.26;ReadPosRankSum=-1.010;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1001,108,0 chrXIII 824885 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.27;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1570,174,0 chrXIII 825266 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.57;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1892,213,0 chrXIII 825407 . G A 2250 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.84;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2283,243,0 chrXIII 825542 . C G 1127 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.61;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1160,135,0 chrXIII 825551 . A G 961 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.86;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:994,114,0 chrXIII 825605 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.29;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1112,126,0 chrXIII 825734 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.58;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1658,180,0 chrXIII 825791 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=91;Dels=0.00;FS=10.898;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.767;QD=19.35;ReadPosRankSum=2.923;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1794,210,0 chrXIII 825995 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.12;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1754,204,0 chrXIII 826214 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.19;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1549,171,0 chrXIII 826310 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=15.03;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1010,111,0 chrXIII 826392 . A T 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=73;Dels=0.03;FS=5.384;HaplotypeScore=4.3223;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.116;QD=16.71;ReadPosRankSum=2.900;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:3,67:71:99:1253,135,0 chrXIII 826394 . T G 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=70;Dels=0.00;FS=2.868;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.232;QD=16.84;ReadPosRankSum=2.379;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1212,135,0 chrXIII 826499 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.67;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1411,159,0 chrXIII 826533 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.39;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1440,162,0 chrXIII 826594 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.25;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1924,213,0 chrXIII 826705 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.65;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1700,186,0 chrXIII 826818 . T G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.412;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.119;QD=22.41;ReadPosRankSum=1.673;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1333,150,0 chrXIII 826912 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.42;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1528,168,0 chrXIII 826921 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.59;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1721,186,0 chrXIII 827091 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.63;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1730,198,0 chrXIII 827148 . G A 1804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=76;Dels=0.00;FS=6.198;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.069;QD=23.74;ReadPosRankSum=-0.577;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1837,198,0 chrXIII 827271 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.16;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1719,192,0 chrXIII 827328 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.32;SB=-1.378e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2510,267,0 chrXIII 827517 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.58;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1697,195,0 chrXIII 827616 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.34;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1552,165,0 chrXIII 827748 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.00;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1753,186,0 chrXIII 827846 . A C 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=4.007;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.888;QD=19.90;ReadPosRankSum=1.688;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1605,180,0 chrXIII 827847 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.06;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1638,180,0 chrXIII 827898 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.15;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1403,153,0 chrXIII 827972 . T A 1309 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=22.96;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1342,144,0 chrXIII 827994 . A G 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=54;Dels=0.00;FS=8.170;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-0.677;QD=20.63;ReadPosRankSum=2.310;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,51:54:99:1147,126,0 chrXIII 828032 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.56;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1635,180,0 chrXIII 828055 . T C 1489 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.58;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1522,171,0 chrXIII 828110 . C A 1073 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=16.77;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1106,117,0 chrXIII 828116 . T C 954 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.14;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:987,111,0 chrXIII 828138 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=72;Dels=0.00;FS=6.079;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-1.186;QD=14.22;ReadPosRankSum=2.901;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,68:72:99:1057,117,0 chrXIII 828149 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3628;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.30;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1321,144,0 chrXIII 828228 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.51;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1715,189,0 chrXIII 828274 . T G 868 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=12.58;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:901,102,0 chrXIII 828282 . A C 754 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=11.42;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:90:787,90,0 chrXIII 828291 . C T 731 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=11.79;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:81:764,81,0 chrXIII 828308 . C T 562 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=9.69;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:66:595,66,0 chrXIII 828384 . A C 1020 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=13.60;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1053,120,0 chrXIII 828388 . T G 1063 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=13.81;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1096,120,0 chrXIII 828518 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.05;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1843,204,0 chrXIII 828927 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.60;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1502,174,0 chrXIII 829031 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1903,213,0 chrXIII 829068 . A T 1883 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.61;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1916,216,0 chrXIII 829503 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.564;DP=95;Dels=0.00;FS=6.148;HaplotypeScore=8.6403;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.181;QD=19.93;ReadPosRankSum=2.926;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1926,213,0 chrXIII 830235 . T C 1111 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1144,126,0 chrXIII 830715 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8185;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.36;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1950,219,0 chrXIII 830826 . A T 2595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.3175;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=0.203;QD=23.17;ReadPosRankSum=0.577;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2628,285,0 chrXIII 831156 . A G 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.507;QD=17.54;ReadPosRankSum=1.662;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1787,198,0 chrXIII 831366 . C A 1679 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1712,186,0 chrXIII 831576 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.58;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:962,105,0 chrXIII 831687 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1965,210,0 chrXIII 831723 . T C 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=72;Dels=0.00;FS=2.788;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.123;QD=21.15;ReadPosRankSum=2.380;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:2,68:72:99:1556,171,0 chrXIII 831989 . T C 1821 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.68;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1854,207,0 chrXIII 832038 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.61;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1739,195,0 chrXIII 832077 . A T 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.254;QD=20.95;ReadPosRankSum=1.640;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1604,174,0 chrXIII 832299 . G A 2308 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.9300;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.31;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2341,252,0 chrXIII 832337 . A G 1978 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.27;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2011,222,0 chrXIII 832356 . T A 1733 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.22;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1766,189,0 chrXIII 832782 . A G 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.889;QD=19.26;ReadPosRankSum=1.670;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2190,255,0 chrXIII 832917 . T A 1777 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.15;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1810,195,0 chrXIII 833149 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.48;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1170,132,0 chrXIII 833534 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2354,252,0 chrXIII 833648 . G A 3313.01 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=25.10;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:3313,363,0 chrXIII 833766 . G A 2195 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.35;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2228,237,0 chrXIII 833842 . T C 1776 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1809,207,0 chrXIII 834292 . T C 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=5.136;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.453;QD=20.17;ReadPosRankSum=1.676;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1304,147,0 chrXIII 834662 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.18;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,150,0 chrXIII 834670 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.36;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1443,156,0 chrXIII 834775 . C G 1602 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.30;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1635,180,0 chrXIII 835125 . T G 1919 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.78;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1952,216,0 chrXIII 835147 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.01;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1819,195,0 chrXIII 835289 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.50;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2003,222,0 chrXIII 835312 . T C 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.971;QD=19.79;ReadPosRankSum=1.694;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1854,207,0 chrXIII 835425 . A T 1178 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1211,135,0 chrXIII 835545 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.4760;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.09;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1580,174,0 chrXIII 835676 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=12.6057;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=19.74;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1889,204,0 chrXIII 835854 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2449;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.62;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2114,228,0 chrXIII 835926 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.87;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1941,216,0 chrXIII 836276 . T C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=79;Dels=0.00;FS=9.381;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.672;QD=19.30;ReadPosRankSum=2.909;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,74:79:99:1558,174,0 chrXIII 836466 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.07;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1699,180,0 chrXIII 836639 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.29;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1185,126,0 chrXIII 836663 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.18;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1251,132,0 chrXIII 837145 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2139,225,0 chrXIII 837443 . C T 2576 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2609,276,0 chrXIII 837515 . A G 2583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.003;QD=22.66;ReadPosRankSum=1.702;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2616,288,0 chrXIII 837639 . T C 2308 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5931;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.17;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2341,264,0 chrXIII 837907 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.9784;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.22;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1667,183,0 chrXIII 838178 . G T 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.84;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1825,198,0 chrXIII 838192 . C G 1805 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.28;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1838,204,0 chrXIII 838336 . G C 1808 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.32;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1841,207,0 chrXIII 839288 . T A 1356 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.23;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1389,150,0 chrXIII 839353 . A C 1105 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.42;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1138,132,0 chrXIII 839871 . T C 1119 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1152,126,0 chrXIII 840002 . T A 1394 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.46;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1427,153,0 chrXIII 840033 . C A 1340 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=53.9530;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=22.33;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1373,144,0 chrXIII 840667 . C T 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=3.876;HaplotypeScore=5.9417;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.856;QD=23.08;ReadPosRankSum=1.690;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1949,207,0 chrXIII 840840 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.21;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2345,246,0 chrXIII 841022 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.51;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1066,123,0 chrXIII 841302 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.00;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1896,198,0 chrXIII 841486 . A G 1733 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.87;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1766,198,0 chrXIII 841599 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7607;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.48;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1999,216,0 chrXIII 841704 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.69;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1982,207,0 chrXIII 841720 . A G 1789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.784;QD=18.83;ReadPosRankSum=1.659;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1822,204,0 chrXIII 841893 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=9.1871;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.35;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2424,264,0 chrXIII 841905 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=20.63;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2055,234,0 chrXIII 842091 . A G 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.336;QD=19.92;ReadPosRankSum=1.584;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1447,162,0 chrXIII 842364 . G A 906 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.18;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:939,102,0 chrXIII 842590 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.58;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1424,153,0 chrXIII 843320 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.74;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2169,243,0 chrXIII 843360 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.93;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1867,210,0 chrXIII 843714 . G A 1918 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.83;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1951,213,0 chrXIII 844047 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.32;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2458,261,0 chrXIII 844681 . T C 1342 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1375,159,0 chrXIII 845352 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.192;QD=21.27;ReadPosRankSum=1.677;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1394,153,0 chrXIII 846009 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.39;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2340,252,0 chrXIII 846119 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8104;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.55;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1714,192,0 chrXIII 846242 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.74;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1790,198,0 chrXIII 846261 . C A 1392 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=16.19;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1425,153,0 chrXIII 846356 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.79;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2111,225,0 chrXIII 846359 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.71;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1998,216,0 chrXIII 846548 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.84;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2136,240,0 chrXIII 846600 . T C 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.837;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.363;QD=22.37;ReadPosRankSum=1.640;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1711,192,0 chrXIII 846746 . T C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.812;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.187;QD=20.91;ReadPosRankSum=1.693;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1894,210,0 chrXIII 847205 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1995,225,0 chrXIII 847460 . C A 3456.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.01;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,156:157:99:3456,378,0 chrXIII 848171 . C T 3551.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=18.0841;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.410;QD=19.95;ReadPosRankSum=1.211;SB=-2.067e+03 GT:AD:DP:GQ:PL 1/1:1,177:178:99:3551,355,0 chrXIII 848515 . A C 2627 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9616;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.71;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2660,297,0 chrXIII 848560 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.66;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2208,240,0 chrXIII 848643 . T C 2131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.082;DP=101;Dels=0.00;FS=15.491;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.822;QD=21.10;ReadPosRankSum=3.890;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:6,92:101:99:2164,240,0 chrXIII 848737 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.52;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2173,234,0 chrXIII 848759 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.88;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1932,210,0 chrXIII 848838 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.05;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1538,168,0 chrXIII 848866 . A C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6659;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.153;QD=19.00;ReadPosRankSum=1.688;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1534,171,0 chrXIII 849171 . T G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1269;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.605;QD=19.69;ReadPosRankSum=1.690;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,81:87:99:1746,195,0 chrXIII 849182 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.45;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1485,159,0 chrXIII 849327 . A T 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.212;QD=19.87;ReadPosRankSum=1.663;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2020,219,0 chrXIII 849836 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.49;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1585,174,0 chrXIII 851079 . G T 2318 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.27;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2351,255,0 chrXIII 851409 . T A 1443 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.86;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1476,156,0 chrXIII 851620 . T A 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=89;Dels=0.00;FS=8.504;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.289;QD=20.17;ReadPosRankSum=2.280;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1828,198,0 chrXIII 851822 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=25.58;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:954,105,0 chrXIII 851845 . G A 865 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.76;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:898,96,0 chrXIII 851869 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.70;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:912,99,0 chrXIII 851894 . A G 1014 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.78;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1047,117,0 chrXIII 851914 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.33;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1193,132,0 chrXIII 852052 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.22;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1179,132,0 chrXIII 852118 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.23;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1328,144,0 chrXIII 852220 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.31;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:779,87,0 chrXIII 852413 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.98;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1077,117,0 chrXIII 853001 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1663,174,0 chrXIII 853352 . C T 1051 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.23;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1084,120,0 chrXIII 853565 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.56;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2124,231,0 chrXIII 853595 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.93;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1358,153,0 chrXIII 853802 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1622,180,0 chrXIII 854030 . C T 2952 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6913;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.24;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2985,321,0 chrXIII 854292 . T A 1638 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.27;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1671,186,0 chrXIII 854525 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.84;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2176,243,0 chrXIII 854921 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5654;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.59;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1424,153,0 chrXIII 854948 . T C 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=76;Dels=0.00;FS=7.322;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.957;QD=19.41;ReadPosRankSum=2.320;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1508,168,0 chrXIII 855635 . G T 1092 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.16;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1125,123,0 chrXIII 856026 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.62;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1568,174,0 chrXIII 856038 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.87;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1536,162,0 chrXIII 856042 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.56;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1493,162,0 chrXIII 856115 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.80;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1756,189,0 chrXIII 856461 . T C 1017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=70;Dels=0.00;FS=10.014;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.247;QD=14.53;ReadPosRankSum=2.697;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1050,117,0 chrXIII 856547 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5165;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.25;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1835,192,0 chrXIII 856578 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.22;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1628,177,0 chrXIII 856584 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.58;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1717,183,0 chrXIII 856673 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.02;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1459,159,0 chrXIII 856807 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1884;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.49;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1774,195,0 chrXIII 856994 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.81;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1914,204,0 chrXIII 857240 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6622;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.08;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2263,255,0 chrXIII 857306 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.94;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1688,186,0 chrXIII 857448 . C G 1308 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1341,150,0 chrXIII 857520 . A G 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.875;QD=18.71;ReadPosRankSum=1.595;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:1941,219,0 chrXIII 857568 . T A 1644 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.68;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1677,177,0 chrXIII 857676 . A G 1491 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.00;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1524,174,0 chrXIII 857842 . T C 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.245;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.672;QD=22.30;ReadPosRankSum=1.368;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1304,144,0 chrXIII 858414 . A G 1323 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.34;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1356,159,0 chrXIII 859063 . A G 483 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.58;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:57:516,57,0 chrXIII 859155 . T G 442 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.09;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:475,54,0 chrXIII 859329 . A G 532 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.34;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:66:565,66,0 chrXIII 859500 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.79;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1755,186,0 chrXIII 859521 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.17;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2027,219,0 chrXIII 859746 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=13.5017;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.71;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1754,198,0 chrXIII 859824 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.48;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1938,213,0 chrXIII 860310 . C T 2365 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.65;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2398,258,0 chrXIII 861287 . T C 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.813;QD=22.44;ReadPosRankSum=2.371;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1424,159,0 chrXIII 861520 . T C 1250 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1283,144,0 chrXIII 861780 . C A 2107 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.46;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2140,234,0 chrXIII 862051 . G A 1005 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.96;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1038,111,0 chrXIII 862056 . C A 974 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.04;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1007,114,0 chrXIII 862065 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=17.07;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:972,108,0 chrXIII 862092 . T C 847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.924;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.193;QD=14.86;ReadPosRankSum=2.364;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:880,102,0 chrXIII 862215 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9699;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.24;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1620,180,0 chrXIII 862224 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.79;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1820,198,0 chrXIII 862695 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.80;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1510,162,0 chrXIII 863037 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.6085;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.62;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1263,144,0 chrXIII 863208 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4471;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.43;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2362,255,0 chrXIII 863229 . T C 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.015;QD=19.89;ReadPosRankSum=1.609;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2281,252,0 chrXIII 863304 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2500;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.57;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2809,303,0 chrXIII 863406 . C T 1641 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.03;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1674,186,0 chrXIII 863526 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=18.34;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1720,189,0 chrXIII 863539 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.30;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1698,192,0 chrXIII 863645 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.14;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2697,294,0 chrXIII 864272 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.07;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1587,177,0 chrXIII 864888 . G T 2293 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.04;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2326,252,0 chrXIII 865393 . T C 1006 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.96;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1039,117,0 chrXIII 865402 . A G 882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.962;QD=15.47;ReadPosRankSum=1.668;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,53:57:99:915,102,0 chrXIII 866096 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.240;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.446;QD=21.34;ReadPosRankSum=1.696;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2124,240,0 chrXIII 866108 . T C 2323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.378;DP=111;Dels=0.00;FS=13.107;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.657;QD=20.93;ReadPosRankSum=3.346;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:4,107:111:99:2356,255,0 chrXIII 866753 . T C 2359 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.1860;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.34;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2392,273,0 chrXIII 868008 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=19.78;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1714,183,0 chrXIII 868389 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.80;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1255,138,0 chrXIII 868542 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:927,105,0 chrXIII 868785 . T G 1276 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.20;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1309,144,0 chrXIII 868833 . T C 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.135;QD=22.19;ReadPosRankSum=2.390;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:2,80:83:99:1875,210,0 chrXIII 869058 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4264;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.94;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1269,138,0 chrXIII 869428 . A G 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.594;QD=15.84;ReadPosRankSum=1.663;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:90:825,90,0 chrXIII 869807 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.66;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1624,183,0 chrXIII 869963 . G T 1444 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1477,156,0 chrXIII 870074 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2097,237,0 chrXIII 870328 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1529,165,0 chrXIII 870588 . C A 1177 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.06;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1210,129,0 chrXIII 871012 . T C 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.800;QD=21.19;ReadPosRankSum=1.666;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1135,129,0 chrXIII 871217 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.93;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1408,153,0 chrXIII 871355 . A T 1280 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1313,141,0 chrXIII 871808 . C A 1033 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1066,120,0 chrXIII 872370 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.47;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1448,162,0 chrXIII 872374 . A C 1308 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.56;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1341,156,0 chrXIII 872837 . T C 2915 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.4962;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.75;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2948,327,0 chrXIII 873817 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=21.52;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2336,252,0 chrXIII 873885 . T G 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=2.884;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=0;MQRankSum=0.035;QD=8.63;ReadPosRankSum=2.404;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,105:108:99:965,108,0 chrXIII 873888 . C G 958 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=30.74;MQ0=0;QD=9.30;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:991,111,0 chrXIII 873896 . C G 920 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=9.39;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:953,108,0 chrXIII 873897 . A G 904 SnpCluster AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=9.22;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:937,105,0 chrXIII 873906 . A G 859 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.246;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=-1.700;QD=7.88;ReadPosRankSum=1.700;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:892,102,0 chrXIII 873909 . A C 874 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=7.95;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:907,102,0 chrXIII 873914 . G C 758 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:93:791,93,0 chrXIII 873915 . A G 783 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.91;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:93:816,93,0 chrXIII 873921 . G A 678 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.14;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:78:711,78,0 chrXIII 873922 . T C 639 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.73;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:78:672,78,0 chrXIII 873933 . A C 618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.4521;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=0.622;QD=6.06;ReadPosRankSum=1.572;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:75:651,75,0 chrXIII 873936 . A C 612 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=6.51;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:78:645,78,0 chrXIII 873945 . G A 719 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=7.41;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:84:752,84,0 chrXIII 873956 . C G 718 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=7.11;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:87:751,87,0 chrXIII 873972 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=9.82;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:986,108,0 chrXIII 874035 . A G 900 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=28.94;MQ0=0;QD=9.57;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:933,108,0 chrXIII 874047 . A T 946 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=10.40;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:979,105,0 chrXIII 874052 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=8.80;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:93:843,93,0 chrXIII 874065 . G A 705 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.34;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:81:738,81,0 chrXIII 874083 . G C 624 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:75:657,75,0 chrXIII 874085 . T C 609 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.08;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:72:642,72,0 chrXIII 874086 . C T 659 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:75:692,75,0 chrXIII 874092 . G A 708 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.15;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:81:741,81,0 chrXIII 874096 . T C 709 SnpCluster AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.16;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:84:742,84,0 chrXIII 874104 . T G 613 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.45;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:75:646,75,0 chrXIII 874107 . A C 595 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.364;QD=6.33;ReadPosRankSum=1.695;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:69:628,69,0 chrXIII 874110 . C G 567 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.37;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:66:600,66,0 chrXIII 874113 . G A 535 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.52;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:63:568,63,0 chrXIII 874114 . C G 523 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.38;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:63:556,63,0 chrXIII 874116 . G A 551 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.72;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:63:584,63,0 chrXIII 874125 . A C 574 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=31.73;MQ0=0;QD=5.74;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:66:607,66,0 chrXIII 874128 . G A 544 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=5.33;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:63:577,63,0 chrXIII 874140 . A C 601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;MQRankSum=-1.047;QD=6.20;ReadPosRankSum=1.696;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:69:634,69,0 chrXIII 874543 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.34;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1280,135,0 chrXIII 874942 . T A 1565 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.74;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1598,171,0 chrXIII 875463 . C G 1601 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.35;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1634,189,0 chrXIII 875532 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=13.1230;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.79;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2016,225,0 chrXIII 875742 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1634,177,0 chrXIII 875850 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.34;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2209,234,0 chrXIII 876530 . G A 2053 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.13;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2086,222,0 chrXIII 876747 . C T 2432 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9697;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.71;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2465,270,0 chrXIII 877203 . G C 1832 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1865,210,0 chrXIII 877396 . A T 1763 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1796,189,0 chrXIII 877611 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.56;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1422,156,0 chrXIII 877786 . A T 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.985;QD=22.46;ReadPosRankSum=1.664;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1201,126,0 chrXIII 878043 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.7091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.29;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:2031,216,0 chrXIII 878152 . C A 1296 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.60;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1329,141,0 chrXIII 878403 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1376,153,0 chrXIII 878778 . C T 305 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.05;SB=-8.563e-03 GT:AD:DP:GQ:PL 1/1:0,18:19:36:338,36,0 chrXIII 878823 . A C 166.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;DP=19;Dels=0.00;FS=47.023;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=0;MQRankSum=-3.592;QD=8.76;ReadPosRankSum=3.254;SB=-4.467e+00 GT:AD:DP:GQ:PL 0/1:7,12:19:1:195,0,1 chrXIII 878825 . A T 194.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=26.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-2.670;QD=12.94;ReadPosRankSum=2.526;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:3,12:15:24:227,24,0 chrXIII 878834 . A G 183.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.08;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:216,24,0 chrXIII 879141 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=8.625;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.664;QD=23.63;ReadPosRankSum=1.597;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1238,144,0 chrXIII 879414 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.481;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.955;QD=21.57;ReadPosRankSum=1.700;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:1,106:108:99:2363,267,0 chrXIII 880104 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.62;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1504,162,0 chrXIII 880179 . T A 1483 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.29;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1516,162,0 chrXIII 880236 . G T 1350 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.75;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1383,150,0 chrXIII 880244 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.77;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1318,144,0 chrXIII 880373 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2040,216,0 chrXIII 880430 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1977,213,0 chrXIII 880546 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.15;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:914,99,0 chrXIII 880820 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1673,180,0 chrXIII 881716 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.0564;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.60;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2114,237,0 chrXIII 882115 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.33;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1591,168,0 chrXIII 883123 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1819,204,0 chrXIII 883174 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.28;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1650,189,0 chrXIII 883291 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.73;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1599,171,0 chrXIII 883606 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.51;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1510,168,0 chrXIII 883726 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.37;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1785,189,0 chrXIII 883975 . C T 2179 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.46;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2212,237,0 chrXIII 884125 . C A 1120 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.50;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1153,123,0 chrXIII 884845 . A G 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=4.717;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.693;QD=21.82;ReadPosRankSum=1.689;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1779,198,0 chrXIII 885057 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.00;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1797,192,0 chrXIII 885067 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.44;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1342,144,0 chrXIII 886078 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.63;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1642,186,0 chrXIII 887158 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0421;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.97;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1549,165,0 chrXIII 887633 . A G 1883 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.82;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1916,213,0 chrXIII 887934 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.94;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1984,225,0 chrXIII 889638 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.69;SB=-1.263e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2805,303,0 chrXIII 892536 . G A 664 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=15.09;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:78:697,78,0 chrXIII 893659 . G T 1531 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.20;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1564,174,0 chrXIII 894039 . A T 1509 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.87;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1542,168,0 chrXIII 894275 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.32;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1592,174,0 chrXIII 894277 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=16.66;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1449,156,0 chrXIII 895870 . G C 1214 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.68;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1247,141,0 chrXIII 895892 . A C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.070;QD=18.33;ReadPosRankSum=1.693;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1664,186,0 chrXIII 896064 . G C 2018 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.2394;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.55;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2051,231,0 chrXIII 896227 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.5690;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.33;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1864,207,0 chrXIII 896727 . A T 1127 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.67;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1160,126,0 chrXIII 896918 . G T 2038 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.91;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:2071,222,0 chrXIII 897605 . A G 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=99;Dels=0.00;FS=3.478;HaplotypeScore=10.6266;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.848;QD=18.67;ReadPosRankSum=-0.990;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1881,213,0 chrXIII 897645 . A C 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=95;Dels=0.00;FS=2.898;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.533;QD=20.02;ReadPosRankSum=1.952;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1935,210,0 chrXIII 897885 . T G 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.444;QD=20.49;ReadPosRankSum=1.991;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1836,204,0 chrXIII 897927 . T C 1474 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.90;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1507,171,0 chrXIII 898093 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.94;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:735,78,0 chrXIII 898146 . C T 959 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:992,105,0 chrXIII 898181 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.61;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1190,129,0 chrXIII 898408 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.35;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1484,159,0 chrXIII 898425 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.50;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1188,132,0 chrXIII 898462 . G T 1342 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.64;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1375,147,0 chrXIII 898537 . A C 2119 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.07;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2152,240,0 chrXIII 898606 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.99;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2258,249,0 chrXIII 898692 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0020;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.122;QD=18.97;ReadPosRankSum=2.355;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1532,168,0 chrXIII 898776 . A G 2238 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.11;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:2271,249,0 chrXIII 898808 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6825;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.41;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2095,222,0 chrXIII 899002 . C A 2240 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.13;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2273,252,0 chrXIII 899239 . T C 3629.01 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.13;SB=-1.998e+03 GT:AD:DP:GQ:PL 1/1:0,163:164:99:3629,402,0 chrXIII 899812 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.603;QD=22.72;ReadPosRankSum=1.657;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1078,123,0 chrXIII 899844 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.80;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1102,120,0 chrXIII 901451 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.1544;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.99;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1392,156,0 chrXIII 901535 . A T 2159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.908;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.085;QD=23.73;ReadPosRankSum=1.694;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2192,234,0 chrXIII 901683 . A C 2065 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.7429;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.74;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2098,234,0 chrXIII 901903 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.84;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1997,222,0 chrXIII 901924 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.47;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2182,234,0 chrXIII 902587 . C A 1498 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1531,171,0 chrXIII 902662 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1337,147,0 chrXIII 902696 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1442,162,0 chrXIII 902762 . T G 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.237;QD=23.48;ReadPosRankSum=1.670;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1348,150,0 chrXIII 903126 . A G 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.336;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.768;QD=21.12;ReadPosRankSum=1.696;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2103,243,0 chrXIII 903204 . T C 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.227;QD=19.72;ReadPosRankSum=1.627;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,98:104:99:2084,234,0 chrXIII 903498 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.385;QD=21.62;ReadPosRankSum=1.694;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:2022,228,0 chrXIII 903771 . T C 762 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.21;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:795,87,0 chrXIII 903804 . A G 992 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5981;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.75;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1025,117,0 chrXIII 903826 . T C 1039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.898;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.396;QD=14.84;ReadPosRankSum=1.633;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1072,123,0 chrXIII 903875 . T G 1475 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.35;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1508,168,0 chrXIII 904006 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.80;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1580,171,0 chrXIII 904052 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.78;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1286,138,0 chrXIII 904069 . A C 1076 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.56;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1109,123,0 chrXIII 904920 . C T 993 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.09;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1026,111,0 chrXIII 905025 . T C 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.229;QD=21.09;ReadPosRankSum=1.667;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1151,132,0 chrXIII 905217 . A C 1175 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.04;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1208,138,0 chrXIII 905531 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.11;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1384,153,0 chrXIII 905568 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.54;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1186,135,0 chrXIII 905893 . A T 1273 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.15;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1306,141,0 chrXIII 905943 . A G 989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.999;QD=18.66;ReadPosRankSum=1.666;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:1022,114,0 chrXIII 906187 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.55;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1727,180,0 chrXIII 906340 . G A 1921 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.32;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1954,216,0 chrXIII 906624 . C T 3342.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.89;SB=-1.708e+03 GT:AD:DP:GQ:PL 1/1:0,145:146:99:3342,357,0 chrXIII 906678 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.7456;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.08;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2532,273,0 chrXIII 906788 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.89;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1684,192,0 chrXIII 906852 . T C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=104;Dels=0.00;FS=3.053;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.924;QD=19.78;ReadPosRankSum=2.354;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2090,234,0 chrXIII 906912 . T C 2393 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.18;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2426,267,0 chrXIII 907585 . T C 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.218;QD=19.27;ReadPosRankSum=1.561;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1979,222,0 chrXIII 907700 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.65;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1919,213,0 chrXIII 907728 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=4.2581;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=1.615;QD=19.69;ReadPosRankSum=1.693;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1785,201,0 chrXIII 907907 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=18.57;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2001,216,0 chrXIII 908047 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.528;QD=20.77;ReadPosRankSum=1.562;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2152,240,0 chrXIII 908105 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=15.90;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1400,156,0 chrXIII 908138 . C T 684 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=10.06;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:78:717,78,0 chrXIII 908143 . A G 602 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=9.26;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:72:635,72,0 chrXIII 908149 . A G 278.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DP=66;Dels=0.00;FS=4.956;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-2.536;QD=4.22;ReadPosRankSum=4.373;SB=-2.058e+02 GT:AD:DP:GQ:PL 0/1:11,55:66:0:307,0,0 chrXIII 908154 . C T 154.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DP=65;Dels=0.00;FS=1.146;HaplotypeScore=2.5664;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=0;MQRankSum=3.471;QD=2.37;ReadPosRankSum=-4.636;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:51,14:65:99:184,0,272 chrXIII 908156 . C T 187.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;DP=66;Dels=0.00;FS=1.097;HaplotypeScore=2.5664;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=3.613;QD=2.83;ReadPosRankSum=-4.825;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:50,16:66:99:217,0,220 chrXIII 908160 . C T 144.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;DP=66;Dels=0.00;FS=0.984;HaplotypeScore=2.7767;MLEAC=1;MLEAF=0.500;MQ=28.73;MQ0=0;MQRankSum=-3.662;QD=2.18;ReadPosRankSum=4.846;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:21,45:66:99:174,0,300 chrXIII 908196 . G C 1442 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.9050;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=18.73;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1475,159,0 chrXIII 908221 . G A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;DP=131;Dels=0.00;FS=49.515;HaplotypeScore=23.2032;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=0;MQRankSum=3.632;QD=0.12;ReadPosRankSum=-6.757;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,39:131:46:46,0,1362 chrXIII 908275 . G A 470.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.675;DP=245;Dels=0.00;FS=6.694;HaplotypeScore=49.8100;MLEAC=1;MLEAF=0.500;MQ=43.47;MQ0=1;MQRankSum=-6.312;QD=1.92;ReadPosRankSum=-4.618;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:158,86:245:99:500,0,1953 chrXIII 908282 . G T 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.259;DP=235;Dels=0.00;FS=9.429;HaplotypeScore=50.8818;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=1;MQRankSum=-7.281;QD=0.79;ReadPosRankSum=-0.258;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:176,59:235:99:215,0,2183 chrXIII 908283 . T C 163.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;DP=236;Dels=0.00;FS=12.333;HaplotypeScore=53.8467;MLEAC=1;MLEAF=0.500;MQ=43.02;MQ0=1;MQRankSum=-6.718;QD=0.69;ReadPosRankSum=-0.101;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:178,58:236:99:193,0,2221 chrXIII 908311 . A G 487.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.364;DP=234;Dels=0.00;FS=0.000;HaplotypeScore=65.6324;MLEAC=1;MLEAF=0.500;MQ=42.20;MQ0=1;MQRankSum=-2.228;QD=2.08;ReadPosRankSum=-5.035;SB=-2.530e+02 GT:AD:DP:GQ:PL 0/1:172,62:234:99:517,0,2052 chrXIII 908318 . T G 89.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.028;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=52.6649;MLEAC=1;MLEAF=0.500;MQ=41.00;MQ0=1;MQRankSum=-1.829;QD=0.44;ReadPosRankSum=-4.031;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:179,22:201:99:119,0,2229 chrXIII 908329 . C A 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DP=165;Dels=0.00;FS=34.998;HaplotypeScore=61.2243;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=1;MQRankSum=-2.389;QD=0.76;ReadPosRankSum=-1.401;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,33:165:99:155,0,1521 chrXIII 908333 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.003;DP=158;Dels=0.00;FS=30.481;HaplotypeScore=43.4590;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=1;MQRankSum=-2.192;QD=0.27;ReadPosRankSum=2.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:135,23:158:73:73,0,1700 chrXIII 908341 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.510;DP=159;Dels=0.00;FS=5.923;HaplotypeScore=36.1115;MLEAC=1;MLEAF=0.500;MQ=42.51;MQ0=1;MQRankSum=-1.539;QD=0.19;ReadPosRankSum=2.371;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:119,36:159:60:60,0,1583 chrXIII 908347 . A G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;DP=173;Dels=0.00;FS=59.373;HaplotypeScore=65.0398;MLEAC=1;MLEAF=0.500;MQ=41.11;MQ0=1;MQRankSum=-1.336;QD=0.23;ReadPosRankSum=0.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:138,32:173:70:70,0,1490 chrXIII 908419 . A G 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.044;DP=124;Dels=0.00;FS=10.521;HaplotypeScore=94.6053;MLEAC=1;MLEAF=0.500;MQ=36.77;MQ0=3;MQRankSum=-3.370;QD=1.32;ReadPosRankSum=-4.870;SB=-6.401e+01 GT:AD:DP:GQ:PL 0/1:77,47:124:99:194,0,358 chrXIII 908437 . C G 302.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;DP=76;Dels=0.00;FS=60.011;HaplotypeScore=20.6477;MLEAC=1;MLEAF=0.500;MQ=38.86;MQ0=3;MQRankSum=3.385;QD=3.97;ReadPosRankSum=-5.246;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:31,36:76:47:332,0,47 chrXIII 908456 . T C 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;DP=61;Dels=0.00;FS=92.343;HaplotypeScore=23.0453;MLEAC=1;MLEAF=0.500;MQ=38.17;MQ0=1;MQRankSum=-1.010;QD=0.36;ReadPosRankSum=6.268;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:35,26:61:52:52,0,132 chrXIII 908458 . T C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.702;DP=61;Dels=0.00;FS=53.028;HaplotypeScore=22.1243;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=1;MQRankSum=1.176;QD=0.46;ReadPosRankSum=5.519;SB=-5.082e+01 GT:AD:DP:GQ:PL 0/1:33,27:61:58:58,0,90 chrXIII 908467 . A G 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;DP=59;Dels=0.00;FS=1.157;HaplotypeScore=37.3191;MLEAC=1;MLEAF=0.500;MQ=30.13;MQ0=1;MQRankSum=1.718;QD=0.76;ReadPosRankSum=4.291;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:21,38:59:75:75,0,84 chrXIII 908473 . G A 333.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;DP=66;Dels=0.00;FS=13.014;HaplotypeScore=47.4459;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=0;MQRankSum=-0.099;QD=5.05;ReadPosRankSum=0.769;SB=-1.591e+02 GT:AD:DP:GQ:PL 0/1:16,49:66:14:363,0,14 chrXIII 908527 . A G 357.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072;DP=113;Dels=0.00;FS=8.199;HaplotypeScore=66.1164;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=1;MQRankSum=-2.290;QD=3.16;ReadPosRankSum=4.006;SB=-2.560e+02 GT:AD:DP:GQ:PL 0/1:74,39:113:99:387,0,1168 chrXIII 908534 . T G 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.174;DP=112;Dels=0.00;FS=3.772;HaplotypeScore=59.6263;MLEAC=1;MLEAF=0.500;MQ=29.89;MQ0=0;MQRankSum=-1.628;QD=0.28;ReadPosRankSum=1.555;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,18:112:61:61,0,1534 chrXIII 908547 . A C 66.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.602;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=74.6499;MLEAC=1;MLEAF=0.500;MQ=29.74;MQ0=0;MQRankSum=-2.183;QD=0.62;ReadPosRankSum=-1.914;SB=-3.401e+01 GT:AD:DP:GQ:PL 0/1:85,20:106:96:96,0,1510 chrXIII 908550 . C T 164.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=82.8213;MLEAC=1;MLEAF=0.500;MQ=29.33;MQ0=0;MQRankSum=-2.443;QD=1.61;ReadPosRankSum=-2.829;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:76,25:102:99:194,0,1268 chrXIII 908563 . A G 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;DP=95;Dels=0.00;FS=69.065;HaplotypeScore=116.7321;MLEAC=1;MLEAF=0.500;MQ=28.52;MQ0=0;MQRankSum=-4.460;QD=1.47;ReadPosRankSum=-1.549;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,32:95:99:170,0,944 chrXIII 908570 . T G 134.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.164;DP=107;Dels=0.00;FS=44.725;HaplotypeScore=73.0967;MLEAC=1;MLEAF=0.500;MQ=29.83;MQ0=0;MQRankSum=-2.159;QD=1.25;ReadPosRankSum=-3.874;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:71,36:107:99:164,0,1104 chrXIII 908571 . C T 146.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;DP=110;Dels=0.00;FS=35.740;HaplotypeScore=77.0479;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=0;MQRankSum=-1.967;QD=1.33;ReadPosRankSum=-4.750;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:70,40:110:99:176,0,1075 chrXIII 908583 . A C 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.973;DP=142;Dels=0.00;FS=47.270;HaplotypeScore=147.0931;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=0;MQRankSum=1.103;QD=1.46;ReadPosRankSum=3.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,26:142:99:237,0,1152 chrXIII 908586 . C T 810.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.498;DP=139;Dels=0.00;FS=147.550;HaplotypeScore=177.7454;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=-0.381;QD=5.83;ReadPosRankSum=3.794;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:71,68:139:99:840,0,751 chrXIII 908594 . T G 304.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;DP=140;Dels=0.00;FS=20.068;HaplotypeScore=133.5097;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=-2.167;QD=2.17;ReadPosRankSum=1.873;SB=-2.080e+02 GT:AD:DP:GQ:PL 0/1:85,55:140:99:334,0,1283 chrXIII 908599 . G A 902.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.168;DP=153;Dels=0.00;FS=2.903;HaplotypeScore=55.3881;MLEAC=1;MLEAF=0.500;MQ=35.87;MQ0=0;MQRankSum=1.622;QD=5.90;ReadPosRankSum=2.868;SB=-7.100e+02 GT:AD:DP:GQ:PL 0/1:64,89:153:99:932,0,638 chrXIII 908629 . A G 475.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.809;DP=181;Dels=0.00;FS=14.440;HaplotypeScore=163.3188;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=0;MQRankSum=-2.050;QD=2.62;ReadPosRankSum=-0.701;SB=-6.100e+02 GT:AD:DP:GQ:PL 0/1:97,84:181:99:505,0,892 chrXIII 908638 . T C 92.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;DP=203;Dels=0.00;FS=11.641;HaplotypeScore=179.5197;MLEAC=1;MLEAF=0.500;MQ=33.58;MQ0=0;MQRankSum=0.048;QD=0.45;ReadPosRankSum=-2.853;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:164,38:203:99:122,0,1420 chrXIII 908642 . G T 95.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=8.113;DP=201;Dels=0.00;FS=1.356;HaplotypeScore=104.4799;MLEAC=1;MLEAF=0.500;MQ=33.58;MQ0=0;MQRankSum=0.611;QD=0.47;ReadPosRankSum=-2.503;SB=-3.020e+02 GT:AD:DP:GQ:PL 0/1:157,44:201:99:125,0,1354 chrXIII 908643 . T C 103.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;DP=207;Dels=0.00;FS=0.607;HaplotypeScore=91.7088;MLEAC=1;MLEAF=0.500;MQ=33.97;MQ0=0;MQRankSum=1.140;QD=0.50;ReadPosRankSum=-2.905;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:157,50:207:99:133,0,1405 chrXIII 908645 . A G 180.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.697;DP=208;Dels=0.00;FS=4.575;HaplotypeScore=72.6188;MLEAC=1;MLEAF=0.500;MQ=34.14;MQ0=0;MQRankSum=0.957;QD=0.87;ReadPosRankSum=-3.192;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:150,58:208:99:210,0,1386 chrXIII 908659 . T C 225.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;DP=224;Dels=0.00;FS=1.174;HaplotypeScore=156.0749;MLEAC=1;MLEAF=0.500;MQ=34.93;MQ0=0;MQRankSum=0.992;QD=1.00;ReadPosRankSum=-1.794;SB=-4.370e+02 GT:AD:DP:GQ:PL 0/1:155,69:224:99:255,0,1162 chrXIII 908660 . T C 356.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.773;DP=225;Dels=0.00;FS=22.910;HaplotypeScore=155.1418;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=0;MQRankSum=1.504;QD=1.58;ReadPosRankSum=-0.836;SB=-4.500e+02 GT:AD:DP:GQ:PL 0/1:122,102:225:99:386,0,988 chrXIII 908671 . G A 254.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.709;DP=219;Dels=0.00;FS=79.817;HaplotypeScore=186.8018;MLEAC=1;MLEAF=0.500;MQ=35.05;MQ0=0;MQRankSum=-0.948;QD=1.16;ReadPosRankSum=-6.544;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:152,67:219:99:284,0,994 chrXIII 908678 . C G 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114;DP=180;Dels=0.00;FS=60.574;HaplotypeScore=233.4238;MLEAC=1;MLEAF=0.500;MQ=34.56;MQ0=0;MQRankSum=-4.017;QD=0.65;ReadPosRankSum=-2.196;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,45:180:99:147,0,752 chrXIII 908689 . G A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.165;DP=167;Dels=0.00;FS=82.553;HaplotypeScore=194.0695;MLEAC=1;MLEAF=0.500;MQ=36.28;MQ0=0;MQRankSum=-3.554;QD=0.26;ReadPosRankSum=-1.812;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,57:167:73:73,0,875 chrXIII 908906 . A T 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=11.163;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=1.179;QD=16.68;ReadPosRankSum=2.905;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1267,135,0 chrXIII 908913 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=16.62;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1180,126,0 chrXIII 909483 . G C 1483 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.26;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1516,171,0 chrXIII 909772 . A C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.954;QD=14.04;ReadPosRankSum=1.693;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1283,144,0 chrXIII 909807 . G C 1804 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8848;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.60;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1837,207,0 chrXIII 909850 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.33;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2066,222,0 chrXIII 909879 . A G 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.212;DP=110;Dels=0.00;FS=18.648;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=4.139;QD=19.69;ReadPosRankSum=4.408;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:7,103:110:99:2199,243,0 chrXIII 909953 . C G 1897 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.08;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1930,225,0 chrXIII 910321 . T A 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;DP=246;Dels=0.00;FS=23.746;HaplotypeScore=36.3713;MLEAC=1;MLEAF=0.500;MQ=39.44;MQ0=0;MQRankSum=-4.132;QD=0.42;ReadPosRankSum=-7.619;SB=-9.980e+02 GT:AD:DP:GQ:PL 0/1:92,154:246:99:134,0,1221 chrXIII 910334 . C T 351.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DP=325;Dels=0.00;FS=100.468;HaplotypeScore=47.6388;MLEAC=1;MLEAF=0.500;MQ=40.34;MQ0=0;MQRankSum=-3.621;QD=1.08;ReadPosRankSum=-1.246;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:175,149:325:99:381,0,2157 chrXIII 910346 . A G 846.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;DP=389;Dels=0.00;FS=98.736;HaplotypeScore=58.7975;MLEAC=1;MLEAF=0.500;MQ=40.06;MQ0=0;MQRankSum=-1.734;QD=2.17;ReadPosRankSum=-2.779;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:310,79:389:99:876,0,2144 chrXIII 910352 . G A 709.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;DP=396;Dels=0.00;FS=124.086;HaplotypeScore=56.4862;MLEAC=1;MLEAF=0.500;MQ=40.15;MQ0=0;MQRankSum=-2.636;QD=1.79;ReadPosRankSum=-4.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:319,74:396:99:739,0,2570 chrXIII 910375 . G A 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.872;DP=397;Dels=0.00;FS=65.879;HaplotypeScore=14.5095;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=0;MQRankSum=-2.815;QD=0.45;ReadPosRankSum=0.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:358,38:397:99:208,0,3305 chrXIII 910380 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.059;DP=390;Dels=0.00;FS=66.486;HaplotypeScore=16.3249;MLEAC=1;MLEAF=0.500;MQ=42.49;MQ0=0;MQRankSum=-3.318;QD=0.05;ReadPosRankSum=2.302;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:358,31:390:50:50,0,3755 chrXIII 910397 . C T 740.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.414;DP=344;Dels=0.00;FS=0.000;HaplotypeScore=35.0080;MLEAC=1;MLEAF=0.500;MQ=45.08;MQ0=0;MQRankSum=-4.913;QD=2.15;ReadPosRankSum=-1.101;SB=-1.093e+03 GT:AD:DP:GQ:PL 0/1:214,130:344:99:770,0,3277 chrXIII 910409 . C A 1191.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;DP=301;Dels=0.00;FS=48.788;HaplotypeScore=43.5095;MLEAC=1;MLEAF=0.500;MQ=45.49;MQ0=0;MQRankSum=-9.140;QD=3.96;ReadPosRankSum=-6.346;SB=-1.503e+03 GT:AD:DP:GQ:PL 0/1:128,172:301:99:1221,0,2265 chrXIII 910413 . G C 1029.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;DP=271;Dels=0.00;FS=46.516;HaplotypeScore=39.5173;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=0;MQRankSum=-9.686;QD=3.80;ReadPosRankSum=-6.787;SB=-1.191e+03 GT:AD:DP:GQ:PL 0/1:124,140:271:99:1059,0,2452 chrXIII 910415 . A G 817.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;DP=258;Dels=0.00;FS=31.585;HaplotypeScore=35.1876;MLEAC=1;MLEAF=0.500;MQ=44.49;MQ0=0;MQRankSum=-8.774;QD=3.17;ReadPosRankSum=-6.432;SB=-9.680e+02 GT:AD:DP:GQ:PL 0/1:129,127:258:99:847,0,2220 chrXIII 910422 . G A 416.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.369;DP=197;Dels=0.00;FS=44.132;HaplotypeScore=8.4331;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=0;MQRankSum=-9.084;QD=2.11;ReadPosRankSum=-8.472;SB=-4.780e+02 GT:AD:DP:GQ:PL 0/1:118,79:197:99:446,0,2565 chrXIII 910423 . C T 166.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=197;Dels=0.00;FS=44.132;HaplotypeScore=8.4331;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=0;MQRankSum=-10.636;QD=0.84;ReadPosRankSum=-9.107;SB=-4.720e+02 GT:AD:DP:GQ:PL 0/1:118,79:197:99:196,0,2512 chrXIII 910733 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.20;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1928,207,0 chrXIII 910835 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.93;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1919,201,0 chrXIII 911799 . G A 2422 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.07;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2455,273,0 chrXIII 911934 . G A 2408 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2066;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.11;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2441,264,0 chrXIII 912006 . G A 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=4.229;HaplotypeScore=8.0589;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=1.030;QD=15.64;ReadPosRankSum=0.666;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2269,249,0 chrXIII 912021 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=13.83;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:2205,249,0 chrXIII 912213 . C G 2044 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.18;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2077,234,0 chrXIII 912216 . T G 1911 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.06;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1944,216,0 chrXIII 912463 . C G 1190 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.76;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1223,135,0 chrXIII 912513 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.80;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:99:1086,120,0 chrXIII 913102 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=4.958;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-0.568;QD=16.52;ReadPosRankSum=1.703;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,118:122:99:2048,231,0 chrXIII 913114 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7810;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.61;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2126,231,0 chrXIII 913306 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.44;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1362,150,0 chrXIII 913342 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.23;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1206,135,0 chrXIII 913395 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.87;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1564,168,0 chrXIII 913426 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.08;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1479,171,0 chrXIII 913525 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=18.12;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1483,168,0 chrXIII 913888 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1435,156,0 chrXIII 914056 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6667;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.94;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1271,138,0 chrXIII 914068 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=14.31;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:920,99,0 chrXIII 914143 . A G 1078 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=6.660;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.444;QD=16.84;ReadPosRankSum=2.373;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1111,123,0 chrXIII 914283 . T A 1411 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.45;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1444,156,0 chrXIII 914425 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=19.27;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1478,165,0 chrXIII 914575 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.15;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1163,129,0 chrXIII 914619 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.57;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1740,192,0 chrXIII 914652 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.16;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1827,201,0 chrXIII 914665 . G C 1578 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.72;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1611,177,0 chrXIII 914705 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=16.16;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:970,105,0 chrXIII 914744 . T G 773 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=16.80;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:806,90,0 chrXIII 914791 . C T 373 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=10.97;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:406,45,0 chrXIII 914795 . A C 336 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=9.08;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:42:369,42,0 chrXIII 914895 . A T 1301 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.02;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1334,144,0 chrXIII 915009 . T A 1028 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.04;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1061,114,0 chrXIII 915182 . A G 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=5.822;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.340;QD=20.62;ReadPosRankSum=1.700;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2239,240,0 chrXIII 915193 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.73;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2164,246,0 chrXIII 915242 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.04;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2017,225,0 chrXIII 915275 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.49;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1982,225,0 chrXIII 915348 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.08;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1635,177,0 chrXIII 915419 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.28;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1778,189,0 chrXIII 915455 . T G 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.0772;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.74;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1630,183,0 chrXIII 915486 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.51;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1653,183,0 chrXIII 915652 . A G 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=2.997;HaplotypeScore=5.3560;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=-2.045;QD=18.63;ReadPosRankSum=2.376;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1281,144,0 chrXIII 915672 . C T 1211 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.22;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:63:99:1244,138,0 chrXIII 915714 . T C 1041 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=20.02;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1074,120,0 chrXIII 915718 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.43;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1190,135,0 chrXIII 915971 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.46;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1307,153,0 chrXIII 915998 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.75;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1308,141,0 chrXIII 916029 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=12.94;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:719,81,0 chrXIII 916101 . T G 532 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=0;QD=10.64;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:565,63,0 chrXIII 916128 . G C 501 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=36.7010;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=11.13;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:60:534,60,0 chrXIII 916136 . A G 51.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.459;DP=46;Dels=0.00;FS=10.621;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;MQRankSum=-0.367;QD=1.13;ReadPosRankSum=-4.190;SB=2.03 GT:AD:DP:GQ:PL 1/1:39,7:46:9:84,9,0 chrXIII 916139 . G A 53.97 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.731;QD=1.26;ReadPosRankSum=-0.731;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,4:43:9:86,9,0 chrXIII 916153 . T C 369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=5.740;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.51;MQ0=0;MQRankSum=1.193;QD=8.20;ReadPosRankSum=1.655;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:45:402,45,0 chrXIII 916161 . G A 470 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.3410;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=10.93;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:54:503,54,0 chrXIII 916168 . T A 433 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;MQRankSum=1.511;QD=9.21;ReadPosRankSum=0.553;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:51:466,51,0 chrXIII 916196 . G T 812 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=14.00;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:93:845,93,0 chrXIII 916272 . T C 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.418;QD=18.59;ReadPosRankSum=1.692;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1650,189,0 chrXIII 916282 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.06;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1731,192,0 chrXIII 916379 . C G 1913 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=22.24;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1946,216,0 chrXIII 916458 . T C 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=0.524;QD=18.80;ReadPosRankSum=1.652;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,42:45:99:879,99,0 chrXIII 916492 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=13.80;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:66:599,66,0 chrXIII 916500 . T C 610 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=12.98;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:72:643,72,0 chrXIII 916511 . T C 566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;MQRankSum=-0.955;QD=11.55;ReadPosRankSum=1.662;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:69:599,69,0 chrXIII 916536 . A G 596 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=10.64;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:72:629,72,0 chrXIII 916550 . C A 578 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=10.32;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:69:611,69,0 chrXIII 916551 . A G 538 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=9.61;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:66:571,66,0 chrXIII 916598 . T A 1615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.413;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.417;QD=20.44;ReadPosRankSum=1.688;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1648,180,0 chrXIII 916639 . T G 2214 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.59;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2247,252,0 chrXIII 916903 . A G 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=7.988;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.521;QD=21.84;ReadPosRankSum=2.386;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1715,192,0 chrXIII 916938 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.14;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1484,174,0 chrXIII 916946 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.39;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1725,186,0 chrXIII 917253 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.87;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1305,141,0 chrXIII 917437 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=17.97;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1435,162,0 chrXIII 917470 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.89;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1505,168,0 chrXIII 917560 . A G 570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=2;MQRankSum=-0.718;QD=13.26;ReadPosRankSum=1.648;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:69:603,69,0 chrXIII 917789 . C T 316 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=2;QD=7.71;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:39:349,39,0 chrXIII 918096 . G A 65.18 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=2;MQRankSum=-0.742;QD=7.24;ReadPosRankSum=-0.742;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:2,7:9:11:95,0,11 chrXIII 918218 . T C 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=22;MQRankSum=-1.762;QD=0.71;ReadPosRankSum=0.271;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:42,24:66:77:77,0,659 chrXIII 918260 . T C 303 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=4;QD=10.10;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:36:336,36,0 chrXIII 918497 . T C 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;DP=130;Dels=0.00;FS=4.585;HaplotypeScore=5.6696;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=10;MQRankSum=-5.554;QD=1.47;ReadPosRankSum=1.400;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:93,36:130:99:221,0,1675 chrXIII 918543 . C T 894 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.985;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=44;MQRankSum=3.463;QD=9.41;ReadPosRankSum=-1.547;SB=-4.177e+02 GT:AD:DP:GQ:PL 1/1:32,63:95:30:927,30,0 chrXIII 919196 . T C 263 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=10;QD=8.77;SB=-9.777e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:33:296,33,0 chrXIII 919296 . G A 979 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;DP=55;Dels=0.00;FS=9.545;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=4;MQRankSum=3.057;QD=17.80;ReadPosRankSum=1.234;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:7,47:55:99:1012,108,0 chrXIII 919306 . T C 831.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DP=68;Dels=0.00;FS=25.583;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=35.61;MQ0=5;MQRankSum=4.703;QD=12.22;ReadPosRankSum=3.414;SB=-5.390e+02 GT:AD:DP:GQ:PL 0/1:17,51:68:32:861,0,32 chrXIII 919313 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.567;DP=71;Dels=0.00;FS=25.600;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=6;MQRankSum=-4.485;QD=0.44;ReadPosRankSum=-1.911;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,16:71:61:61,0,918 chrXIII 919337 . T C 197.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;DP=73;Dels=0.00;FS=1.018;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.37;MQ0=6;MQRankSum=-1.227;QD=2.70;ReadPosRankSum=-1.407;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:48,25:73:99:227,0,740 chrXIII 919341 . G A 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;DP=69;Dels=0.00;FS=2.202;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=33.26;MQ0=6;MQRankSum=-1.334;QD=2.74;ReadPosRankSum=-1.117;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:44,25:69:99:219,0,673 chrXIII 919415 . A G 500.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;DP=66;Dels=0.00;FS=8.072;HaplotypeScore=59.3551;MLEAC=1;MLEAF=0.500;MQ=41.84;MQ0=2;MQRankSum=0.383;QD=7.58;ReadPosRankSum=0.908;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:36,30:66:99:530,0,573 chrXIII 919473 . T C 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905;DP=37;Dels=0.00;FS=13.627;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=36.58;MQ0=6;MQRankSum=0.099;QD=5.73;ReadPosRankSum=0.573;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:17,20:37:99:242,0,339 chrXIII 919476 . A G 534 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=7;QD=14.83;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:66:567,66,0 chrXIII 919555 . A C 841.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;DP=98;Dels=0.00;FS=35.877;HaplotypeScore=9.7916;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=4;MQRankSum=0.616;QD=8.58;ReadPosRankSum=1.742;SB=-4.258e+02 GT:AD:DP:GQ:PL 0/1:43,53:98:99:871,0,439 chrXIII 919594 . A G 678.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.297;DP=97;Dels=0.00;FS=18.539;HaplotypeScore=7.9737;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=1;MQRankSum=-0.555;QD=6.99;ReadPosRankSum=0.220;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:51,46:97:99:708,0,883 chrXIII 919677 . A G 1305 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=2;QD=17.88;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1338,156,0 chrXIII 919702 . G T 985 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=1;QD=16.15;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1018,111,0 chrXIII 919704 . T A 913 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=1;MQRankSum=-0.982;QD=14.97;ReadPosRankSum=1.675;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:946,111,0 chrXIII 919712 . C A 1043 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=1;QD=15.34;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1076,120,0 chrXIII 919904 . G A 965.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.921;DP=125;Dels=0.00;FS=2.419;HaplotypeScore=9.0513;MLEAC=1;MLEAF=0.500;MQ=36.04;MQ0=12;MQRankSum=-0.964;QD=7.72;ReadPosRankSum=0.463;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:59,66:125:99:995,0,814 chrXIII 920010 . T C 420.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8425;MLEAC=1;MLEAF=0.500;MQ=35.90;MQ0=23;MQRankSum=-0.294;QD=5.00;ReadPosRankSum=-0.264;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:50,34:84:99:450,0,607 chrXIII 920246 . C T 509.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=96;Dels=0.00;FS=38.877;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=26;MQRankSum=-1.803;QD=5.30;ReadPosRankSum=-0.348;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:33,63:96:99:539,0,209 chrXIII 920330 . C A 559 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=13;QD=13.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:63:592,63,0 chrXIII 920337 . G C 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.16;MQ0=15;MQRankSum=0.027;QD=3.24;ReadPosRankSum=0.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,23:42:99:166,0,196 chrXIII 920399 . A C 172.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.381;DP=88;Dels=0.00;FS=9.569;HaplotypeScore=5.8186;MLEAC=1;MLEAF=0.500;MQ=14.10;MQ0=37;MQRankSum=-0.895;QD=1.95;ReadPosRankSum=0.198;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:44,44:88:99:202,0,210 chrXIII 920576 . C T 376.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DP=80;Dels=0.00;FS=15.411;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=18.99;MQ0=22;MQRankSum=2.693;QD=4.70;ReadPosRankSum=2.629;SB=-6.492e-03 GT:AD:DP:GQ:PL 0/1:49,31:80:99:406,0,115 chrXIII 920654 . G A 380.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;DP=93;Dels=0.00;FS=56.649;HaplotypeScore=7.9101;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=4;MQRankSum=5.169;QD=4.09;ReadPosRankSum=1.073;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,27:93:99:410,0,878 chrXIII 920732 . C T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=3;QD=1.65;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrXIII 920936 . T C 158.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DP=157;Dels=0.00;FS=6.700;HaplotypeScore=22.4667;MLEAC=1;MLEAF=0.500;MQ=36.43;MQ0=11;MQRankSum=-5.355;QD=1.01;ReadPosRankSum=2.238;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:113,42:157:99:188,0,1875 chrXIII 921041 . A T 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=137;Dels=0.00;FS=7.745;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=30.99;MQ0=19;MQRankSum=-3.667;QD=0.66;ReadPosRankSum=-1.554;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:95,42:137:99:120,0,1781 chrXIII 921577 . G C 314 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.46;MQ0=14;QD=7.14;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:42:347,42,0 chrXIII 921776 . T C 922 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=9;QD=15.11;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:955,105,0 chrXIII 921832 . T C 431 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=50.3895;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=4;QD=7.18;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:51:464,51,0 chrXIII 921837 . T C 517 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=50.3895;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=2;QD=8.91;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:60:550,60,0 chrXIII 921858 . C T 535 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=2;QD=10.49;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:568,63,0 chrXIII 921878 . A C 366 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=32.3625;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=2;QD=9.63;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:45:399,45,0 chrXIII 921903 . A G 504 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=1;QD=13.62;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:537,63,0 chrXIII 921904 . A G 570 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=1;QD=15.41;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:66:603,66,0 chrXIII 921949 . A C 304 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=25;Dels=0.00;FS=6.532;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=6;MQRankSum=-1.156;QD=12.16;ReadPosRankSum=1.542;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,23:25:39:337,39,0 chrXIII 921982 . G A 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=39;Dels=0.00;FS=14.988;HaplotypeScore=3.9470;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=6;MQRankSum=2.049;QD=1.77;ReadPosRankSum=-1.838;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,10:39:99:99,0,291 chrXIII 922031 . G A 489 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=5;QD=12.87;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:522,60,0 chrXIII 922056 . G A 590 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=3;QD=16.39;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:623,69,0 chrXIII 922118 . T C 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.670;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=-1.732;QD=16.40;ReadPosRankSum=1.691;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1427,159,0 chrXIII 922258 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.10;MQ0=4;MQRankSum=1.635;QD=2.31;ReadPosRankSum=0.135;SB=-2.301e+01 GT:AD:DP:GQ:PL 0/1:11,5:16:67:67,0,82 chrXIII 922267 . T A 161.06 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=4;QD=11.50;SB=-1.099e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:21:194,21,0 chrXIII 922282 . A C 125.13 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.90;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:18:158,18,0 chrXIII 922340 . G T 224 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=22;QD=4.00;SB=-1.809e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:30:257,30,0 chrXIII 922388 . A G 1379 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=30;MQRankSum=0.472;QD=11.69;ReadPosRankSum=1.693;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:1412,165,0 chrXIII 922489 . T G 125.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.20;MQ0=0;MQRankSum=-0.619;QD=4.47;ReadPosRankSum=1.609;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:1,27:28:18:158,18,0 chrXIII 922493 . G C 154.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.174;DP=32;Dels=0.00;FS=3.452;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=1;MQRankSum=0.280;QD=4.81;ReadPosRankSum=1.174;SB=-7.279e-02 GT:AD:DP:GQ:PL 1/1:1,30:32:21:187,21,0 chrXIII 922496 . A C 165.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.90;MQ0=2;MQRankSum=1.243;QD=4.23;ReadPosRankSum=1.713;SB=-7.470e-02 GT:AD:DP:GQ:PL 1/1:2,37:39:21:198,21,0 chrXIII 922594 . C T 200.01 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9889;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=21;QD=4.08;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,44:49:27:233,27,0 chrXIII 922596 . C T 200.01 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.79;MQ0=21;QD=4.76;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:27:233,27,0 chrXIII 922946 . C T 418 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DP=37;Dels=0.00;FS=2.580;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=8;MQRankSum=2.878;QD=11.30;ReadPosRankSum=-1.044;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:12,25:37:51:451,51,0 chrXIII 922949 . T C 426 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;DP=39;Dels=0.00;FS=2.593;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=9;MQRankSum=2.898;QD=10.92;ReadPosRankSum=-0.519;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:12,27:39:51:459,51,0 chrXIII 922967 . T C 723 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=18;QD=11.66;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:756,84,0 chrXIII 923049 . A T 18.13 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;DP=93;Dels=0.00;FS=5.164;HaplotypeScore=78.4411;MLEAC=1;MLEAF=0.500;MQ=30.51;MQ0=4;MQRankSum=0.775;QD=0.19;ReadPosRankSum=-2.916;SB=-2.206e+01 GT:AD:DP:GQ:PL 0/1:87,6:93:16:48,0,16 chrXIII 923132 . G T 4671.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=13.6247;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=7;MQRankSum=-0.030;QD=22.14;ReadPosRankSum=0.054;SB=-1.518e+03 GT:AD:DP:GQ:PL 1/1:2,209:211:99:4671,491,0 chrXIII 923169 . C T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.1418;MLEAC=1;MLEAF=0.500;MQ=47.47;MQ0=3;MQRankSum=-5.837;QD=0.20;ReadPosRankSum=-3.088;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:101,23:132:57:57,0,2023 chrXIII 923183 . A G 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.442;DP=91;Dels=0.00;FS=14.190;HaplotypeScore=6.0565;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=1;MQRankSum=4.184;QD=18.19;ReadPosRankSum=1.786;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:13,78:91:99:1688,157,0 chrXIII 923213 . T A 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.206;DP=57;Dels=0.00;FS=5.133;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;MQRankSum=1.804;QD=15.95;ReadPosRankSum=2.820;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:4,47:57:99:942,99,0 chrXIII 923260 . G A 207.01 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=16.4267;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=0;QD=9.86;SB=-2.368e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:27:240,27,0 chrXIII 923271 . T C 137.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=7.62;SB=-1.415e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:170,18,0 chrXIII 923299 . T C 330 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.2014;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;MQRankSum=1.383;QD=11.79;ReadPosRankSum=1.740;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:2,26:28:42:363,42,0 chrXIII 923303 . G A 68.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=25;Dels=0.00;FS=13.262;HaplotypeScore=6.8218;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-1.985;QD=2.72;ReadPosRankSum=1.659;SB=-4.300e+01 GT:AD:DP:GQ:PL 0/1:13,12:25:98:98,0,151 chrXIII 923305 . A C 362 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=7.6105;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=12.48;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:395,45,0 chrXIII 923373 . T G 678.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;DP=119;Dels=0.00;FS=8.134;HaplotypeScore=8.2357;MLEAC=1;MLEAF=0.500;MQ=45.07;MQ0=0;MQRankSum=-1.444;QD=5.70;ReadPosRankSum=-0.152;SB=-1.970e+02 GT:AD:DP:GQ:PL 0/1:65,54:119:99:708,0,1053 chrXIII 923387 . C T 1365.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;DP=127;Dels=0.00;FS=2.705;HaplotypeScore=3.3555;MLEAC=1;MLEAF=0.500;MQ=45.12;MQ0=2;MQRankSum=1.843;QD=10.75;ReadPosRankSum=-3.285;SB=-4.580e+02 GT:AD:DP:GQ:PL 0/1:48,79:127:99:1395,0,571 chrXIII 923430 . A G 1508 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=4;MQRankSum=0.476;QD=17.74;ReadPosRankSum=1.646;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1541,171,0 chrXIII 923489 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=2;QD=18.15;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1358,153,0 chrXIII 923490 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=2;QD=19.74;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1454,153,0 chrXIII 923602 . T G 1216 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=23.4855;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=12.16;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1249,141,0 chrXIII 923606 . A T 1197 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=24.6493;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=12.47;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1230,135,0 chrXIII 923622 . A G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.715;DP=90;Dels=0.00;FS=72.228;HaplotypeScore=65.6365;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=0;MQRankSum=-2.781;QD=0.14;ReadPosRankSum=-2.202;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,35:90:42:42,0,895 chrXIII 923629 . A T 125.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;DP=84;Dels=0.00;FS=40.930;HaplotypeScore=72.1809;MLEAC=1;MLEAF=0.500;MQ=31.92;MQ0=0;MQRankSum=-4.497;QD=1.49;ReadPosRankSum=-2.447;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:34,50:84:99:155,0,685 chrXIII 923652 . T G 398.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;DP=64;Dels=0.00;FS=15.533;HaplotypeScore=51.3500;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=2;MQRankSum=3.347;QD=6.22;ReadPosRankSum=-0.596;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:42,22:64:99:428,0,126 chrXIII 923654 . T C 499.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DP=63;Dels=0.00;FS=68.396;HaplotypeScore=51.3500;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=2;MQRankSum=2.024;QD=7.93;ReadPosRankSum=-0.584;SB=-1.373e+02 GT:AD:DP:GQ:PL 0/1:31,30:63:1:528,0,1 chrXIII 923665 . T C 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DP=68;Dels=0.00;FS=28.296;HaplotypeScore=75.7860;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=3;MQRankSum=0.819;QD=0.17;ReadPosRankSum=-0.854;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,11:68:41:41,0,523 chrXIII 923675 . C T 256.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;DP=69;Dels=0.03;FS=2.490;HaplotypeScore=76.6731;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=6;MQRankSum=2.320;QD=3.71;ReadPosRankSum=1.331;SB=-1.050e+02 GT:AD:DP:GQ:PL 0/1:15,52:67:99:286,0,99 chrXIII 923679 . T C 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;DP=88;Dels=0.00;FS=11.319;HaplotypeScore=68.8666;MLEAC=1;MLEAF=0.500;MQ=23.03;MQ0=7;MQRankSum=2.024;QD=0.94;ReadPosRankSum=1.112;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:71,17:88:99:113,0,367 chrXIII 923698 . A G 342.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DP=113;Dels=0.00;FS=10.385;HaplotypeScore=65.8459;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=10;MQRankSum=-0.359;QD=3.03;ReadPosRankSum=-1.998;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:88,25:113:99:372,0,536 chrXIII 923707 . G A 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.609;DP=113;Dels=0.00;FS=7.058;HaplotypeScore=164.1766;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=10;MQRankSum=1.803;QD=0.83;ReadPosRankSum=0.452;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,26:113:99:124,0,890 chrXIII 923710 . G A 635.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.168;DP=115;Dels=0.00;FS=20.865;HaplotypeScore=122.4571;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=11;MQRankSum=0.191;QD=5.52;ReadPosRankSum=0.469;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:66,48:115:99:665,0,332 chrXIII 923712 . T C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390;DP=111;Dels=0.00;FS=12.700;HaplotypeScore=121.6980;MLEAC=1;MLEAF=0.500;MQ=22.72;MQ0=11;MQRankSum=-0.289;QD=0.21;ReadPosRankSum=1.096;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,30:111:53:53,0,843 chrXIII 923739 . G A 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=58.9340;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=12;MQRankSum=-2.550;QD=0.27;ReadPosRankSum=-1.991;SB=-2.101e+01 GT:AD:DP:GQ:PL 0/1:123,15:138:67:67,0,1162 chrXIII 923747 . T C 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.718;DP=136;Dels=0.00;FS=23.505;HaplotypeScore=105.7462;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=12;MQRankSum=1.998;QD=2.24;ReadPosRankSum=0.740;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:107,29:136:99:335,0,858 chrXIII 923752 . T G 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900;DP=140;Dels=0.00;FS=1.219;HaplotypeScore=93.2226;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=11;MQRankSum=-1.815;QD=0.52;ReadPosRankSum=-2.837;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:100,36:140:99:103,0,1104 chrXIII 923767 . A C 1283 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;DP=113;Dels=0.00;FS=3.395;HaplotypeScore=7.9344;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=8;MQRankSum=-0.990;QD=11.35;ReadPosRankSum=1.185;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:3,109:113:99:1316,127,0 chrXIII 923782 . A G 1359 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=14.4653;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=5;QD=13.73;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1392,171,0 chrXIII 923809 . A G 161.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.096;DP=115;Dels=0.00;FS=19.357;HaplotypeScore=26.5819;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=2;MQRankSum=-6.096;QD=1.40;ReadPosRankSum=-4.439;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:79,36:115:99:191,0,1375 chrXIII 923847 . G A 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.013;DP=118;Dels=0.00;FS=47.785;HaplotypeScore=15.4887;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=0;MQRankSum=-1.114;QD=1.61;ReadPosRankSum=-3.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:93,24:118:99:220,0,1696 chrXIII 923857 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=117;Dels=0.00;FS=45.859;HaplotypeScore=31.8097;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=0;MQRankSum=-0.292;QD=0.83;ReadPosRankSum=1.755;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,19:117:99:127,0,1776 chrXIII 923883 . G A 850.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;DP=102;Dels=0.00;FS=2.655;HaplotypeScore=119.8302;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=2;MQRankSum=1.768;QD=8.33;ReadPosRankSum=-5.260;SB=-4.480e+02 GT:AD:DP:GQ:PL 0/1:46,54:102:99:880,0,551 chrXIII 923908 . C G 439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=29.4086;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=2;MQRankSum=-0.163;QD=4.53;ReadPosRankSum=3.655;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:66,31:97:99:469,0,1033 chrXIII 923948 . A T 295.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;DP=54;Dels=0.00;FS=4.442;HaplotypeScore=24.3575;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=3;MQRankSum=-1.495;QD=5.46;ReadPosRankSum=-2.614;SB=-1.120e+02 GT:AD:DP:GQ:PL 0/1:31,23:54:99:325,0,582 chrXIII 923973 . G A 347.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;DP=40;Dels=0.00;FS=49.801;HaplotypeScore=16.2182;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=5;MQRankSum=3.030;QD=8.68;ReadPosRankSum=-0.381;SB=0.406 GT:AD:DP:GQ:PL 0/1:21,19:40:99:377,0,116 chrXIII 923986 . T C 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DP=49;Dels=0.00;FS=39.011;HaplotypeScore=18.8896;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=7;MQRankSum=3.736;QD=2.96;ReadPosRankSum=0.812;SB=0.406 GT:AD:DP:GQ:PL 0/1:39,10:49:99:175,0,220 chrXIII 923987 . G A 259.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.878;DP=48;Dels=0.00;FS=7.305;HaplotypeScore=18.8896;MLEAC=1;MLEAF=0.500;MQ=20.69;MQ0=7;MQRankSum=1.716;QD=5.40;ReadPosRankSum=1.999;SB=-1.758e+02 GT:AD:DP:GQ:PL 0/1:18,30:48:99:289,0,146 chrXIII 924005 . C T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;DP=61;Dels=0.00;FS=15.007;HaplotypeScore=11.5517;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=9;MQRankSum=-0.499;QD=0.36;ReadPosRankSum=0.615;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,11:61:52:52,0,477 chrXIII 924029 . A G 435.77 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DP=63;Dels=0.03;FS=47.721;HaplotypeScore=32.8074;MLEAC=1;MLEAF=0.500;MQ=19.51;MQ0=8;MQRankSum=1.134;QD=6.92;ReadPosRankSum=0.322;SB=-3.578e+01 GT:AD:DP:GQ:PL 0/1:13,48:61:0:464,0,0 chrXIII 924037 . G C 648.79 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;DP=78;Dels=0.00;FS=40.749;HaplotypeScore=76.2476;MLEAC=2;MLEAF=1.00;MQ=21.37;MQ0=7;MQRankSum=1.611;QD=8.32;ReadPosRankSum=-0.195;SB=-3.278e+01 GT:AD:DP:GQ:PL 1/1:15,63:78:10:681,10,0 chrXIII 924046 . G A 358.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.665;DP=114;Dels=0.03;FS=16.079;HaplotypeScore=76.4245;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=7;MQRankSum=-0.958;QD=3.14;ReadPosRankSum=-0.020;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,44:111:99:388,0,759 chrXIII 924072 . A G 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;DP=122;Dels=0.02;FS=1.191;HaplotypeScore=71.2955;MLEAC=1;MLEAF=0.500;MQ=23.00;MQ0=5;MQRankSum=-0.062;QD=2.38;ReadPosRankSum=-2.283;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:78,42:120:99:320,0,936 chrXIII 924074 . G T 272.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=120;Dels=0.01;FS=0.000;HaplotypeScore=68.9551;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=3;MQRankSum=-0.356;QD=2.27;ReadPosRankSum=-2.244;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:77,42:119:99:302,0,937 chrXIII 924077 . T C 691.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.946;DP=121;Dels=0.01;FS=17.381;HaplotypeScore=69.7622;MLEAC=1;MLEAF=0.500;MQ=23.29;MQ0=3;MQRankSum=2.833;QD=5.71;ReadPosRankSum=6.574;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:69,51:120:99:721,0,477 chrXIII 924078 . A G 1627 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=4.784;DP=120;Dels=0.01;FS=4.485;HaplotypeScore=69.7622;MLEAC=2;MLEAF=1.00;MQ=23.39;MQ0=2;MQRankSum=-0.346;QD=13.56;ReadPosRankSum=5.619;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:12,107:119:99:1660,201,0 chrXIII 924113 . A G 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.507;DP=112;Dels=0.00;FS=4.413;HaplotypeScore=35.3999;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=1;MQRankSum=0.043;QD=0.27;ReadPosRankSum=0.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,15:112:60:60,0,1079 chrXIII 924147 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=52;Dels=0.00;FS=2.333;HaplotypeScore=93.0464;MLEAC=1;MLEAF=0.500;MQ=20.76;MQ0=3;MQRankSum=-1.058;QD=0.27;ReadPosRankSum=-0.500;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,12:52:44:44,0,155 chrXIII 924164 . A G 136.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;DP=56;Dels=0.00;FS=4.410;HaplotypeScore=40.0638;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=2;MQRankSum=0.170;QD=2.43;ReadPosRankSum=-0.223;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:26,29:56:99:166,0,194 chrXIII 924183 . C T 406.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=54;Dels=0.00;FS=21.654;HaplotypeScore=41.8891;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=2;MQRankSum=2.929;QD=7.52;ReadPosRankSum=-1.187;SB=-4.027e+01 GT:AD:DP:GQ:PL 1/1:9,42:54:15:439,15,0 chrXIII 924189 . G A 193.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;DP=59;Dels=0.00;FS=9.913;HaplotypeScore=13.6872;MLEAC=1;MLEAF=0.500;MQ=24.36;MQ0=2;MQRankSum=2.418;QD=3.27;ReadPosRankSum=-1.700;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:31,28:59:99:223,0,212 chrXIII 924196 . G T 732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.2213;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=2;MQRankSum=1.552;QD=10.76;ReadPosRankSum=-0.281;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:87:765,87,0 chrXIII 924200 . A T 302.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;DP=71;Dels=0.00;FS=17.558;HaplotypeScore=4.0815;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=1;MQRankSum=0.918;QD=4.25;ReadPosRankSum=-1.633;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:30,41:71:99:332,0,281 chrXIII 924216 . G T 169.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=81;Dels=0.00;FS=2.378;HaplotypeScore=100.2062;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=0.397;QD=2.09;ReadPosRankSum=-0.195;SB=-6.793e-03 GT:AD:DP:GQ:PL 0/1:57,14:81:39:199,0,39 chrXIII 924217 . G A 174.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;DP=84;Dels=0.00;FS=2.357;HaplotypeScore=99.3121;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=0;MQRankSum=1.755;QD=2.07;ReadPosRankSum=0.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,14:84:99:204,0,135 chrXIII 924222 . A C 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=114.5825;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=1.300;QD=1.07;ReadPosRankSum=0.807;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,14:83:99:119,0,642 chrXIII 924224 . C G 916 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=27.7140;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=11.45;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,79:80:99:949,108,0 chrXIII 924228 . A G 388.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.388;DP=85;Dels=0.00;FS=7.189;HaplotypeScore=19.8418;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=1.315;QD=4.56;ReadPosRankSum=3.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,47:85:99:418,0,348 chrXIII 924242 . A G,T 793.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.832;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=17.6736;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.32;MQ0=0;MQRankSum=2.001;QD=10.17;ReadPosRankSum=2.910;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:3,28,47:78:99:853,512,470,341,0,278 chrXIII 924243 . A G 444.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=43.3502;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=1.096;QD=5.92;ReadPosRankSum=0.562;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,51:75:99:474,0,251 chrXIII 924246 . G A 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=52.1209;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=1.990;QD=1.92;ReadPosRankSum=-0.224;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,18:73:99:170,0,563 chrXIII 924253 . T A 99.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=55.0845;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=0;MQRankSum=-0.333;QD=1.52;ReadPosRankSum=0.240;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,16:64:99:129,0,440 chrXIII 924263 . T G 407.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=58.8728;MLEAC=1;MLEAF=0.500;MQ=28.01;MQ0=0;MQRankSum=1.643;QD=6.17;ReadPosRankSum=-1.630;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,39:66:99:437,0,216 chrXIII 924264 . A T 797 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.047;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=59.8661;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;MQRankSum=2.798;QD=12.08;ReadPosRankSum=-0.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,62:65:93:830,93,0 chrXIII 924268 . A G,T 708.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.895;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=33.5387;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.88;MQ0=0;MQRankSum=3.591;QD=10.41;ReadPosRankSum=-0.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:5,17,45:67:99:768,580,556,188,0,119 chrXIII 924272 . G C 378.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.599;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=67.1602;MLEAC=1;MLEAF=0.500;MQ=28.00;MQ0=0;MQRankSum=0.428;QD=5.73;ReadPosRankSum=-1.046;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,35:65:99:408,0,179 chrXIII 924274 . T C 45.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=70.0031;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=0.686;QD=0.69;ReadPosRankSum=1.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,15:64:75:75,0,490 chrXIII 924275 . A T 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=73.0495;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=0;MQRankSum=-0.178;QD=0.74;ReadPosRankSum=1.016;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,16:64:78:78,0,494 chrXIII 924277 . G A,T 580.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.511;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=63.0627;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.09;MQ0=0;MQRankSum=2.169;QD=9.51;ReadPosRankSum=-0.223;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/2:5,15,41:61:85:640,495,477,145,0,85 chrXIII 924290 . T C 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=75.6513;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=-0.047;QD=0.63;ReadPosRankSum=1.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,9:42:57:57,0,314 chrXIII 924292 . A G 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=75.0293;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=0;MQRankSum=1.242;QD=0.70;ReadPosRankSum=1.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,9:42:60:60,0,206 chrXIII 924293 . G A 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=76.0136;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=0;MQRankSum=1.276;QD=0.43;ReadPosRankSum=1.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,9:41:48:48,0,298 chrXIII 924294 . G A 140.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;DP=40;Dels=0.05;FS=0.000;HaplotypeScore=86.9379;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=-0.687;QD=3.50;ReadPosRankSum=-0.866;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,15:38:99:170,0,136 chrXIII 924295 . G T 50.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.702;DP=40;Dels=0.05;FS=5.798;HaplotypeScore=86.0878;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=0.381;QD=1.25;ReadPosRankSum=0.514;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:28,10:38:80:80,0,265 chrXIV 6602 . C A 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=0;QD=9.79;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrXIV 6603 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=0;QD=9.59;SB=-2.621e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:80,9,0 chrXIV 6612 . T G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=0;QD=9.79;SB=-2.521e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:81,9,0 chrXIV 6786 . C T 371.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=36;Dels=0.00;FS=9.294;HaplotypeScore=7.6390;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=2;MQRankSum=0.306;QD=10.31;ReadPosRankSum=1.631;SB=-4.602e+01 GT:AD:DP:GQ:PL 1/1:1,35:36:29:404,29,0 chrXIV 6818 . A T 346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DP=37;Dels=0.00;FS=5.119;HaplotypeScore=8.5533;MLEAC=2;MLEAF=1.00;MQ=21.94;MQ0=2;MQRankSum=0.667;QD=9.35;ReadPosRankSum=1.600;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,27:37:42:379,42,0 chrXIV 6832 . T C 95.26 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=19.8584;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=2;QD=3.81;SB=-1.442e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:15:128,15,0 chrXIV 6923 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;DP=32;Dels=0.00;FS=4.843;HaplotypeScore=16.8687;MLEAC=2;MLEAF=1.00;MQ=18.64;MQ0=5;MQRankSum=-0.636;QD=0.68;ReadPosRankSum=-0.636;SB=-7.876e+01 GT:AD:DP:GQ:PL 1/1:9,23:32:6:53,6,0 chrXIV 6964 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;DP=34;Dels=0.00;FS=1.744;HaplotypeScore=12.4268;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=6;MQRankSum=1.510;QD=1.26;ReadPosRankSum=2.805;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:14,20:34:63:73,0,63 chrXIV 6973 . T C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=12.6908;MLEAC=1;MLEAF=0.500;MQ=18.24;MQ0=6;MQRankSum=-0.021;QD=1.08;ReadPosRankSum=3.698;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:27,10:38:63:71,0,63 chrXIV 6982 . T C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=12.4254;MLEAC=1;MLEAF=0.500;MQ=17.27;MQ0=6;MQRankSum=-0.580;QD=0.87;ReadPosRankSum=0.580;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:21,17:38:63:63,0,67 chrXIV 6992 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DP=36;Dels=0.00;FS=1.661;HaplotypeScore=25.0292;MLEAC=1;MLEAF=0.500;MQ=18.50;MQ0=3;MQRankSum=-1.116;QD=0.92;ReadPosRankSum=1.978;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:25,11:36:63:63,0,77 chrXIV 6993 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DP=36;Dels=0.00;FS=1.661;HaplotypeScore=26.0547;MLEAC=1;MLEAF=0.500;MQ=18.50;MQ0=3;MQRankSum=-0.960;QD=0.83;ReadPosRankSum=2.096;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:25,11:36:60:60,0,91 chrXIV 7010 . T C 119.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;DP=24;Dels=0.04;FS=2.780;HaplotypeScore=32.6889;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=1;MQRankSum=-0.957;QD=4.96;ReadPosRankSum=1.626;SB=-1.249e+02 GT:AD:DP:GQ:PL 1/1:3,20:23:21:152,21,0 chrXIV 7057 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=8.3286;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=3.16;SB=-1.805e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:12:102,12,0 chrXIV 7064 . A G 39.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DP=23;Dels=0.00;FS=25.660;HaplotypeScore=13.3488;MLEAC=1;MLEAF=0.500;MQ=25.16;MQ0=0;MQRankSum=1.646;QD=1.71;ReadPosRankSum=3.389;SB=0.316 GT:AD:DP:GQ:PL 0/1:15,8:23:10:69,0,10 chrXIV 7096 . G A 121.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=22.9692;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=6.06;SB=-1.811e+02 GT:AD:DP:GQ:PL 1/1:0,18:19:18:154,18,0 chrXIV 7109 . A C 24.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;DP=29;Dels=0.00;FS=41.433;HaplotypeScore=22.1101;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=1;MQRankSum=-0.146;QD=0.83;ReadPosRankSum=0.732;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:10,14:29:54:54,0,77 chrXIV 7110 . C T 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=30;Dels=0.00;FS=24.422;HaplotypeScore=24.0258;MLEAC=1;MLEAF=0.500;MQ=23.86;MQ0=1;MQRankSum=1.481;QD=1.67;ReadPosRankSum=1.158;SB=-6.499e-03 GT:AD:DP:GQ:PL 0/1:24,6:30:52:80,0,52 chrXIV 7114 . A G 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;DP=35;Dels=0.00;FS=19.453;HaplotypeScore=26.8121;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=1;MQRankSum=0.697;QD=1.14;ReadPosRankSum=1.790;SB=-1.782e+01 GT:AD:DP:GQ:PL 0/1:16,17:35:70:70,0,107 chrXIV 7146 . C T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.445;DP=48;Dels=0.02;FS=30.360;HaplotypeScore=34.4619;MLEAC=2;MLEAF=1.00;MQ=18.13;MQ0=8;MQRankSum=-0.058;QD=1.14;ReadPosRankSum=2.783;SB=2.49 GT:AD:DP:GQ:PL 1/1:39,8:47:12:87,12,0 chrXIV 7148 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DP=49;Dels=0.00;FS=23.593;HaplotypeScore=34.4619;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=9;MQRankSum=0.392;QD=0.67;ReadPosRankSum=2.349;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:40,9:49:63:63,0,81 chrXIV 7155 . C T 135.06 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DP=46;Dels=0.00;FS=26.412;HaplotypeScore=46.0156;MLEAC=2;MLEAF=1.00;MQ=16.97;MQ0=9;MQRankSum=1.638;QD=2.94;ReadPosRankSum=-1.671;SB=-1.373e+02 GT:AD:DP:GQ:PL 1/1:18,28:46:21:168,21,0 chrXIV 7215 . C A 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;DP=32;Dels=0.00;FS=7.570;HaplotypeScore=17.4793;MLEAC=1;MLEAF=0.500;MQ=14.27;MQ0=16;MQRankSum=2.435;QD=1.25;ReadPosRankSum=2.117;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:16,16:32:32:70,0,32 chrXIV 7216 . T G 95.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=33;Dels=0.00;FS=6.368;HaplotypeScore=20.1801;MLEAC=2;MLEAF=1.00;MQ=14.40;MQ0=16;MQRankSum=-0.134;QD=2.89;ReadPosRankSum=1.470;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:10,19:33:15:128,15,0 chrXIV 7224 . T G 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=10.2828;MLEAC=1;MLEAF=0.500;MQ=16.05;MQ0=14;MQRankSum=-1.237;QD=0.70;ReadPosRankSum=-2.062;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:24,6:30:51:51,0,91 chrXIV 7254 . C T 393.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;DP=54;Dels=0.00;FS=16.885;HaplotypeScore=12.1758;MLEAC=1;MLEAF=0.500;MQ=18.30;MQ0=13;MQRankSum=-2.550;QD=7.28;ReadPosRankSum=-1.299;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:16,37:54:46:423,0,46 chrXIV 7294 . G A 451.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.716;DP=56;Dels=0.00;FS=29.610;HaplotypeScore=14.6906;MLEAC=1;MLEAF=0.500;MQ=18.47;MQ0=6;MQRankSum=-0.455;QD=8.05;ReadPosRankSum=2.560;SB=-1.441e+02 GT:AD:DP:GQ:PL 0/1:11,42:56:16:481,0,16 chrXIV 7313 . G A 503 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.007;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=20;MQRankSum=1.410;QD=7.98;ReadPosRankSum=-0.201;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:9,50:63:66:536,66,0 chrXIV 7333 . A T 144.04 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DP=55;Dels=0.00;FS=14.418;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.59;MQ0=29;MQRankSum=1.609;QD=2.62;ReadPosRankSum=-3.425;SB=-5.280e+00 GT:AD:DP:GQ:PL 0/1:34,21:55:18:174,0,18 chrXIV 7346 . C T 10.45 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=1;MLEAF=0.500;MQ=8.68;MQ0=33;MQRankSum=0.135;QD=0.23;ReadPosRankSum=-2.793;SB=-2.193e+01 GT:AD:DP:GQ:PL 0/1:16,29:45:18:40,0,18 chrXIV 7370 . T C 43.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.165;DP=56;Dels=0.00;FS=6.113;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=8.68;MQ0=42;MQRankSum=0.715;QD=0.79;ReadPosRankSum=1.625;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:30,26:56:9:76,9,0 chrXIV 7408 . C A 278 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.76;MQ0=27;QD=4.88;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:36:311,36,0 chrXIV 7451 . A G 215.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;DP=39;Dels=0.00;FS=11.604;HaplotypeScore=4.8026;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=5;MQRankSum=0.565;QD=5.53;ReadPosRankSum=-2.733;SB=-6.979e+01 GT:AD:DP:GQ:PL 0/1:7,32:39:4:245,0,4 chrXIV 7467 . T A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DP=29;Dels=0.00;FS=7.537;HaplotypeScore=8.9874;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=1;MQRankSum=-0.613;QD=0.59;ReadPosRankSum=2.098;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:21,8:29:47:47,0,59 chrXIV 8815 . A C 43.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=2.93;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:76,9,0 chrXIV 8818 . T C 44.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=2;MQRankSum=1.531;QD=2.37;ReadPosRankSum=1.531;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:1,18:19:9:77,9,0 chrXIV 8986 . A G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.474;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.8938;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=3;MQRankSum=1.423;QD=1.34;ReadPosRankSum=1.423;SB=-2.326e+01 GT:AD:DP:GQ:PL 1/1:1,13:14:6:50,6,0 chrXIV 9256 . C T 486 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.225;DP=62;Dels=0.00;FS=9.824;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=30;MQRankSum=2.707;QD=7.84;ReadPosRankSum=1.282;SB=-1.918e+02 GT:AD:DP:GQ:PL 1/1:17,45:62:38:519,38,0 chrXIV 9739 . A G 477 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=7;QD=17.67;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:60:510,60,0 chrXIV 9744 . A G 398 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=15;QD=11.71;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,32:34:51:431,51,0 chrXIV 9830 . C G 355.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;DP=142;Dels=0.00;FS=5.585;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=15.89;MQ0=89;MQRankSum=1.488;QD=2.50;ReadPosRankSum=0.187;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:72,69:142:99:385,0,331 chrXIV 9913 . T C 362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.946;DP=103;Dels=0.00;FS=6.477;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=33;MQRankSum=0.042;QD=3.51;ReadPosRankSum=-1.243;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:59,43:103:99:392,0,298 chrXIV 9920 . C A 399.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=105;Dels=0.00;FS=3.126;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.07;MQ0=29;MQRankSum=0.343;QD=3.80;ReadPosRankSum=-0.021;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:60,45:105:99:429,0,347 chrXIV 9930 . A G 961 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=22.05;MQ0=24;QD=8.98;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,107:107:99:994,111,0 chrXIV 10027 . A G 292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;DP=90;Dels=0.00;FS=5.461;HaplotypeScore=9.6307;MLEAC=1;MLEAF=0.500;MQ=29.95;MQ0=10;MQRankSum=-2.655;QD=3.24;ReadPosRankSum=2.239;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:45,44:90:99:322,0,306 chrXIV 10172 . G A 256 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=21;QD=6.40;SB=-1.519e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:289,33,0 chrXIV 10233 . C T 119.13 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=7.94;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:18:152,18,0 chrXIV 10270 . A C 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=1;MQRankSum=-0.531;QD=4.30;ReadPosRankSum=0.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,9:20:99:116,0,171 chrXIV 10272 . G A 325 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=1;QD=16.25;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:42:358,42,0 chrXIV 10441 . A G 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=9;MQRankSum=-1.209;QD=2.63;ReadPosRankSum=0.141;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:31,17:48:99:156,0,326 chrXIV 10460 . C A 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.431;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=8;MQRankSum=-0.290;QD=3.65;ReadPosRankSum=1.178;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:17,26:43:99:187,0,244 chrXIV 10478 . A C 470 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=7;MQRankSum=-0.963;QD=10.93;ReadPosRankSum=1.636;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:57:503,57,0 chrXIV 10487 . T C 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DP=51;Dels=0.00;FS=2.755;HaplotypeScore=5.4434;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=10;MQRankSum=-3.169;QD=3.67;ReadPosRankSum=0.561;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:26,25:51:99:217,0,248 chrXIV 10567 . A G 1041 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=67;Dels=0.00;FS=3.254;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=12;MQRankSum=-1.291;QD=15.54;ReadPosRankSum=1.669;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1074,123,0 chrXIV 10574 . A C 923 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=11;QD=15.13;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:956,111,0 chrXIV 10660 . T C 1182 filter AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.9581;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=8;QD=12.44;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1215,141,0 chrXIV 10683 . T C 1075 filter AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=8;QD=10.64;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1108,126,0 chrXIV 10694 . T C 1184 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=8;QD=10.76;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1217,138,0 chrXIV 10708 . A G 193.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;DP=107;Dels=0.00;FS=20.457;HaplotypeScore=3.3057;MLEAC=1;MLEAF=0.500;MQ=29.40;MQ0=6;MQRankSum=-4.175;QD=1.80;ReadPosRankSum=-0.151;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:66,41:107:99:223,0,699 chrXIV 10711 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.983;DP=106;Dels=0.00;FS=15.600;HaplotypeScore=7.1647;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=6;MQRankSum=-3.357;QD=1.76;ReadPosRankSum=0.387;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:65,36:106:99:217,0,651 chrXIV 10817 . C A 555.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.801;DP=80;Dels=0.00;FS=5.264;HaplotypeScore=5.9320;MLEAC=1;MLEAF=0.500;MQ=38.84;MQ0=13;MQRankSum=2.027;QD=6.94;ReadPosRankSum=-0.797;SB=-2.950e+02 GT:AD:DP:GQ:PL 0/1:44,36:80:99:585,0,468 chrXIV 10855 . T G 418 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.01;MQ0=20;QD=8.71;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:51:451,51,0 chrXIV 10888 . A G 171.03 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.84;MQ0=13;QD=5.70;SB=-2.602e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:24:204,24,0 chrXIV 11082 . A G 684.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791;DP=104;Dels=0.00;FS=3.983;HaplotypeScore=16.7068;MLEAC=1;MLEAF=0.500;MQ=35.94;MQ0=4;MQRankSum=-1.107;QD=6.58;ReadPosRankSum=1.025;SB=-3.610e+02 GT:AD:DP:GQ:PL 0/1:51,53:104:99:714,0,689 chrXIV 11130 . A G 562.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DP=95;Dels=0.00;FS=6.882;HaplotypeScore=8.6681;MLEAC=1;MLEAF=0.500;MQ=41.88;MQ0=2;MQRankSum=1.156;QD=5.92;ReadPosRankSum=0.603;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:47,48:95:99:592,0,735 chrXIV 11175 . T C 351.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;DP=62;Dels=0.00;FS=2.369;HaplotypeScore=6.0047;MLEAC=1;MLEAF=0.500;MQ=35.32;MQ0=9;MQRankSum=-1.104;QD=5.66;ReadPosRankSum=-0.198;SB=-1.760e+02 GT:AD:DP:GQ:PL 0/1:34,27:62:99:381,0,364 chrXIV 11193 . G A 245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DP=46;Dels=0.00;FS=7.068;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=9;MQRankSum=1.640;QD=5.33;ReadPosRankSum=-0.812;SB=-1.500e+02 GT:AD:DP:GQ:PL 0/1:19,27:46:99:275,0,249 chrXIV 11347 . C T 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.875;DP=86;Dels=0.00;FS=9.675;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=14.91;MQ0=42;MQRankSum=-0.255;QD=0.78;ReadPosRankSum=2.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,40:86:97:97,0,148 chrXIV 11406 . T C 1204.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.359;DP=142;Dels=0.00;FS=2.725;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=29.55;MQ0=13;MQRankSum=-0.215;QD=8.48;ReadPosRankSum=0.220;SB=-3.360e+02 GT:AD:DP:GQ:PL 0/1:63,79:142:99:1234,0,971 chrXIV 12034 . G A 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.66;MQ0=88;MQRankSum=1.791;QD=0.58;ReadPosRankSum=-0.377;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,54:101:31:89,0,31 chrXIV 12174 . T C 466 filter AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=15.10;MQ0=32;QD=4.44;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,105:105:57:499,57,0 chrXIV 12185 . C T 414 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=14.78;MQ0=34;QD=4.18;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,98:99:51:447,51,0 chrXIV 12237 . C T 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DP=64;Dels=0.00;FS=12.913;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=11.60;MQ0=40;MQRankSum=-0.239;QD=0.91;ReadPosRankSum=0.512;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:30,32:64:35:88,0,35 chrXIV 12343 . A T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.67;MQ0=73;QD=0.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:35,42:77:6:53,6,0 chrXIV 12373 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.24;MQ0=75;QD=0.28;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:32,47:79:6:53,6,0 chrXIV 12487 . A G 147.06 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.70;MQ0=49;QD=2.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:21:180,21,0 chrXIV 12563 . T G 279 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=19.44;MQ0=19;MQRankSum=-1.734;QD=6.64;ReadPosRankSum=1.583;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,41:42:36:312,36,0 chrXIV 12597 . T A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;DP=80;Dels=0.00;FS=4.871;HaplotypeScore=5.5715;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=19;MQRankSum=2.046;QD=0.59;ReadPosRankSum=-0.375;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,9:80:77:77,0,528 chrXIV 12685 . G A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;DP=86;Dels=0.00;FS=2.884;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=11.79;MQ0=69;MQRankSum=1.357;QD=0.57;ReadPosRankSum=0.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,34:86:79:79,0,150 chrXIV 12750 . C T 64.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.37;MQ0=60;MQRankSum=0.736;QD=0.97;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,22:65:12:94,0,12 chrXIV 12751 . C T 65.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.52;MQ0=58;MQRankSum=0.736;QD=1.02;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,21:63:12:95,0,12 chrXIV 12847 . T C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DP=70;Dels=0.00;FS=2.884;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=20.61;MQ0=33;MQRankSum=0.258;QD=2.41;ReadPosRankSum=1.443;SB=-1.230e+02 GT:AD:DP:GQ:PL 0/1:31,39:70:99:199,0,245 chrXIV 12884 . A G 479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.124;DP=87;Dels=0.00;FS=17.242;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=14;MQRankSum=0.017;QD=5.51;ReadPosRankSum=1.110;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:47,40:87:99:509,0,516 chrXIV 12930 . G A 928 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=13.85;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:961,111,0 chrXIV 12941 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=12.75;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:96:836,96,0 chrXIV 12971 . A G 621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=43.3562;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=1;MQRankSum=0.850;QD=11.09;ReadPosRankSum=1.606;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:75:654,75,0 chrXIV 13011 . C A,T 334.01 filter AC=1,1;AF=0.500,0.500;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.94;MQ0=22;QD=6.30;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/2:0,26,26:52:99:394,233,212,162,0,132 chrXIV 13014 . C T 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=54;Dels=0.00;FS=3.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=24;MQRankSum=-1.226;QD=2.07;ReadPosRankSum=-0.353;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:26,27:54:99:142,0,214 chrXIV 13209 . G T 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.07;MQ0=15;QD=0.76;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,26:26:6:51,6,0 chrXIV 13308 . A G 172.03 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.14;MQ0=47;QD=2.92;SB=-3.661e-02 GT:AD:DP:GQ:PL 1/1:0,58:59:24:205,24,0 chrXIV 13968 . T C 151.06 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.99;MQ0=14;QD=4.87;SB=-5.107e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:21:184,21,0 chrXIV 14062 . A G 1564 filter AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=35;QD=13.03;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:1597,180,0 chrXIV 14268 . A T 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;DP=100;Dels=0.00;FS=12.882;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.00;MQ0=65;MQRankSum=0.150;QD=2.03;ReadPosRankSum=-0.650;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:54,46:100:99:233,0,447 chrXIV 14580 . A T 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;DP=90;Dels=0.00;FS=2.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.22;MQ0=68;MQRankSum=-0.853;QD=0.81;ReadPosRankSum=0.307;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:39,51:90:55:103,0,55 chrXIV 14818 . C G 1021.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.301;DP=192;Dels=0.00;FS=6.680;HaplotypeScore=13.0650;MLEAC=1;MLEAF=0.500;MQ=18.86;MQ0=53;MQRankSum=5.040;QD=5.32;ReadPosRankSum=1.544;SB=-4.350e+02 GT:AD:DP:GQ:PL 0/1:100,88:192:99:1051,0,1090 chrXIV 15245 . A T 314.01 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=10.17;MQ0=70;QD=3.45;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,29:91:42:347,42,0 chrXIV 15574 . G A 135.06 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.74;MQ0=20;QD=2.41;SB=-2.407e+01 GT:AD:DP:GQ:PL 1/1:0,54:56:21:168,21,0 chrXIV 15593 . T C 512.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;DP=103;Dels=0.00;FS=109.988;HaplotypeScore=12.7243;MLEAC=1;MLEAF=0.500;MQ=19.17;MQ0=26;MQRankSum=-0.182;QD=4.97;ReadPosRankSum=0.837;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:27,76:103:57:542,0,57 chrXIV 16234 . T C 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=3.118;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.380;QD=18.60;ReadPosRankSum=1.690;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1577,180,0 chrXIV 16343 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.45;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2458,276,0 chrXIV 16367 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.37;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2144,234,0 chrXIV 16379 . A T 1790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.901;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.679;QD=17.55;ReadPosRankSum=1.664;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1823,201,0 chrXIV 16445 . T C 1471 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.7804;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=12.90;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1504,171,0 chrXIV 16517 . C T 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.649;DP=139;Dels=0.00;FS=40.349;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=47.72;MQ0=5;MQRankSum=-5.841;QD=0.82;ReadPosRankSum=1.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:117,22:139:99:144,0,1770 chrXIV 16538 . G A 213.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DP=125;Dels=0.00;FS=49.241;HaplotypeScore=5.8289;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=5;MQRankSum=-7.065;QD=1.70;ReadPosRankSum=-0.294;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,33:125:99:243,0,1378 chrXIV 16801 . T C 1030 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=96;Dels=0.00;FS=24.930;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=29.39;MQ0=9;MQRankSum=-0.046;QD=10.73;ReadPosRankSum=3.730;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:5,91:96:99:1063,123,0 chrXIV 16808 . T A 954 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=108;Dels=0.00;FS=1.013;HaplotypeScore=10.5990;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=9;MQRankSum=1.614;QD=8.83;ReadPosRankSum=1.088;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:19,89:108:51:987,51,0 chrXIV 16847 . C T 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.371;DP=127;Dels=0.00;FS=10.202;HaplotypeScore=10.0057;MLEAC=1;MLEAF=0.500;MQ=40.95;MQ0=4;MQRankSum=-4.015;QD=0.27;ReadPosRankSum=1.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,21:127:64:64,0,1599 chrXIV 17165 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;QD=18.51;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1014,111,0 chrXIV 17275 . G A 850 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=13.49;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:96:883,96,0 chrXIV 17296 . C A 833 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.7103;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=13.66;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:866,96,0 chrXIV 17342 . A G 1109 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=16.31;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1142,135,0 chrXIV 17343 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=17.86;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1265,138,0 chrXIV 17438 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.4313;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.72;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1445,159,0 chrXIV 17550 . T G 1182 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.11;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1215,138,0 chrXIV 17589 . A G 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.941;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.124;QD=23.68;ReadPosRankSum=1.672;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1383,156,0 chrXIV 17617 . G C 1258 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.32;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1291,150,0 chrXIV 17657 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.08;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1572,180,0 chrXIV 17669 . C T 1328 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.42;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1361,147,0 chrXIV 17685 . A G 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.547;QD=21.01;ReadPosRankSum=1.686;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1609,180,0 chrXIV 17835 . A G 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=6.824;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.102;QD=24.84;ReadPosRankSum=1.597;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1946,216,0 chrXIV 18046 . T C 1938 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.53;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1971,222,0 chrXIV 19604 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.69;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1096,126,0 chrXIV 19703 . A G 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.267;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.697;QD=18.34;ReadPosRankSum=1.653;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1629,183,0 chrXIV 19742 . T C 2083 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.83;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2116,240,0 chrXIV 19918 . T C 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.602;QD=19.23;ReadPosRankSum=1.694;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1821,207,0 chrXIV 20018 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.19;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1587,186,0 chrXIV 20559 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.07;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1466,162,0 chrXIV 21301 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.022;QD=19.31;ReadPosRankSum=1.687;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1539,177,0 chrXIV 21317 . A C 1653 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.68;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1686,189,0 chrXIV 21360 . C T 2180 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9912;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.57;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2213,246,0 chrXIV 21401 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.03;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1947,222,0 chrXIV 21949 . T C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=89;Dels=0.00;FS=3.112;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.201;QD=18.00;ReadPosRankSum=1.692;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:1,85:89:99:1635,186,0 chrXIV 22700 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.17;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1490,174,0 chrXIV 23134 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.08;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1208,135,0 chrXIV 23219 . T C 2235 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.13;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2268,252,0 chrXIV 23439 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.80;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1835,201,0 chrXIV 23459 . G A 2010 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.10;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2043,225,0 chrXIV 23540 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.94;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1529,171,0 chrXIV 24599 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.45;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1638,186,0 chrXIV 24616 . G T 1418 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=16.49;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1451,165,0 chrXIV 24680 . A G 1873 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.36;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1906,219,0 chrXIV 26183 . A G 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.292;QD=19.31;ReadPosRankSum=-0.110;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2485,285,0 chrXIV 26408 . G A 2936 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.49;SB=-1.460e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2969,330,0 chrXIV 26744 . G T 1651.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;DP=218;Dels=0.00;FS=12.594;HaplotypeScore=12.7286;MLEAC=1;MLEAF=0.500;MQ=56.57;MQ0=0;MQRankSum=0.053;QD=7.57;ReadPosRankSum=1.113;SB=-1.036e+03 GT:AD:DP:GQ:PL 0/1:107,111:218:99:1681,0,1674 chrXIV 26765 . A G 796.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.694;DP=174;Dels=0.00;FS=6.040;HaplotypeScore=16.7412;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=0;MQRankSum=-3.871;QD=4.57;ReadPosRankSum=2.321;SB=-4.900e+02 GT:AD:DP:GQ:PL 0/1:104,67:174:99:826,0,1664 chrXIV 26783 . G A 365.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.794;DP=136;Dels=0.00;FS=0.737;HaplotypeScore=10.6013;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=0;MQRankSum=-3.389;QD=2.68;ReadPosRankSum=-0.962;SB=-1.950e+02 GT:AD:DP:GQ:PL 0/1:92,42:136:99:395,0,1348 chrXIV 26795 . T C 156.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;DP=133;Dels=0.00;FS=12.300;HaplotypeScore=8.9169;MLEAC=1;MLEAF=0.500;MQ=56.51;MQ0=0;MQRankSum=-3.550;QD=1.17;ReadPosRankSum=-2.857;SB=-4.801e+01 GT:AD:DP:GQ:PL 0/1:100,33:133:99:186,0,1600 chrXIV 26953 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1653,180,0 chrXIV 27283 . T C 1305 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1338,153,0 chrXIV 27347 . T C 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.660;QD=20.93;ReadPosRankSum=1.650;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:99:933,108,0 chrXIV 27917 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.74;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1734,189,0 chrXIV 28026 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.46;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1583,171,0 chrXIV 28173 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.12;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1117,126,0 chrXIV 28602 . T A 1261 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.02;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1294,141,0 chrXIV 28617 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.53;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1182,132,0 chrXIV 29547 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.73;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2006,228,0 chrXIV 29813 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.322;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.149;QD=21.00;ReadPosRankSum=1.698;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,100:103:99:2196,255,0 chrXIV 29975 . A G 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.615;QD=18.27;ReadPosRankSum=1.674;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,58:62:99:1166,135,0 chrXIV 30032 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.90;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1129,132,0 chrXIV 30398 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.49;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1573,168,0 chrXIV 30413 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.50;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1398,153,0 chrXIV 30470 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.86;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1840,216,0 chrXIV 30578 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.41;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2281,246,0 chrXIV 31190 . T C 1704 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1737,195,0 chrXIV 31443 . T C 700 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:84:733,84,0 chrXIV 31678 . G T 650 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.21;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:75:683,75,0 chrXIV 31680 . T C 608 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:72:641,72,0 chrXIV 32093 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.85;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1451,162,0 chrXIV 32285 . A G 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.784;QD=18.75;ReadPosRankSum=1.696;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1814,213,0 chrXIV 32330 . A C 1947 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.72;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1980,225,0 chrXIV 32654 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.97;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1340,156,0 chrXIV 33086 . A G 764 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:90:797,90,0 chrXIV 33230 . T A 103.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.61;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:15:136,15,0 chrXIV 33272 . G A 1378 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1411,162,0 chrXIV 33540 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.23;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2007,237,0 chrXIV 33711 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.45;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1481,162,0 chrXIV 33762 . G C 1747 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.64;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1780,207,0 chrXIV 34193 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=15.28;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1378,150,0 chrXIV 34396 . T G 917 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.38;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:950,111,0 chrXIV 34412 . G A 850 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.73;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:883,99,0 chrXIV 34432 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=20.06;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:735,81,0 chrXIV 34467 . A G 490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-2.120;QD=16.33;ReadPosRankSum=2.286;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,28:30:60:523,60,0 chrXIV 34477 . G A 252 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=9.69;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:26:33:285,33,0 chrXIV 34497 . G A 420 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=17.50;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:51:453,51,0 chrXIV 34567 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.76;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1321,141,0 chrXIV 34590 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.50;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:926,99,0 chrXIV 34717 . T A 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.173;QD=21.74;ReadPosRankSum=1.676;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1381,159,0 chrXIV 35061 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=15.63;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1565,174,0 chrXIV 35169 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.189;QD=15.87;ReadPosRankSum=1.701;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:1811,207,0 chrXIV 35196 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=15.79;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1644,186,0 chrXIV 35508 . G T 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.76;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1673,186,0 chrXIV 35542 . C T 1775 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9379;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.75;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1808,198,0 chrXIV 36063 . C T 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.227;QD=21.20;ReadPosRankSum=1.371;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2068,228,0 chrXIV 36225 . T C 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=3.424;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.512;QD=17.72;ReadPosRankSum=1.693;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1628,186,0 chrXIV 36273 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.74;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1734,201,0 chrXIV 36502 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.25;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1572,171,0 chrXIV 36531 . T G 1747 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.99;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1780,198,0 chrXIV 36738 . T C 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=4.163;HaplotypeScore=6.5771;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.247;QD=14.32;ReadPosRankSum=1.654;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:1952,219,0 chrXIV 36744 . T C 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=140;Dels=0.00;FS=7.880;HaplotypeScore=9.8640;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.365;QD=13.04;ReadPosRankSum=2.325;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:2,136:140:99:1858,213,0 chrXIV 37062 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.24;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1802,204,0 chrXIV 37063 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.71;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1945,219,0 chrXIV 37986 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.00;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1851,210,0 chrXIV 38344 . A G 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.444;QD=19.75;ReadPosRankSum=1.675;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1218,135,0 chrXIV 38764 . A T 1684 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.32;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1717,195,0 chrXIV 39122 . T C 1939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=91;Dels=0.00;FS=2.862;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.401;QD=21.31;ReadPosRankSum=2.394;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:2,88:91:99:1972,225,0 chrXIV 39181 . C T 1731 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.13;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1764,195,0 chrXIV 39652 . A G 2129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.033;QD=20.47;ReadPosRankSum=1.699;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2162,246,0 chrXIV 39922 . C T 2324 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=21.52;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2357,267,0 chrXIV 40008 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.75;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1889,213,0 chrXIV 40397 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2234;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.99;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1837,210,0 chrXIV 40430 . T C 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.423;QD=20.84;ReadPosRankSum=1.232;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1909,216,0 chrXIV 40627 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.86;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1536,165,0 chrXIV 40852 . A C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.437;QD=20.00;ReadPosRankSum=-1.290;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1913,219,0 chrXIV 40918 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.95;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1960,222,0 chrXIV 42031 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.19;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1888,207,0 chrXIV 42185 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.25;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1795,198,0 chrXIV 42360 . A G 1478 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1511,174,0 chrXIV 42594 . A T 1338 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=15.20;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1371,150,0 chrXIV 42611 . A G 1183 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=14.25;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1216,138,0 chrXIV 42639 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.13;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1485,171,0 chrXIV 43099 . A T 899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=-1.073;QD=20.91;ReadPosRankSum=1.568;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:932,99,0 chrXIV 43100 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.17;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:96:838,96,0 chrXIV 43141 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.10;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:938,105,0 chrXIV 43155 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=15.58;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:90:781,90,0 chrXIV 43311 . A G 658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=5.384;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=1.368;QD=16.87;ReadPosRankSum=1.641;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:78:691,78,0 chrXIV 43402 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.66;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1358,153,0 chrXIV 43498 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.47;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1718,192,0 chrXIV 43654 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.71;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1255,141,0 chrXIV 43810 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.29;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1229,141,0 chrXIV 43912 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.2734;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.69;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1492,171,0 chrXIV 44216 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.82;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1460,165,0 chrXIV 44605 . A G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.666;QD=20.90;ReadPosRankSum=1.688;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1684,195,0 chrXIV 44757 . T C 1954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=108;Dels=0.00;FS=12.817;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.548;QD=18.09;ReadPosRankSum=3.356;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:4,101:108:99:1987,228,0 chrXIV 45049 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1456,162,0 chrXIV 45407 . T C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.335;QD=20.69;ReadPosRankSum=1.675;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1295,147,0 chrXIV 45479 . G T 1547 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.10;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1580,174,0 chrXIV 45497 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3920;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.96;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1488,171,0 chrXIV 45634 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.14;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2389,264,0 chrXIV 46130 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.68;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1637,177,0 chrXIV 46179 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.27;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1168,135,0 chrXIV 46489 . A G 1638 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.44;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1671,186,0 chrXIV 46554 . C T 1138 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.26;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1171,129,0 chrXIV 46706 . G C 1874 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.58;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1907,216,0 chrXIV 46814 . C T 1975 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.19;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2008,222,0 chrXIV 46872 . A G 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.524;QD=17.34;ReadPosRankSum=1.692;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1524,180,0 chrXIV 46925 . A G 1257 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.388;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;MQRankSum=-1.371;QD=13.09;ReadPosRankSum=1.552;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1290,150,0 chrXIV 46928 . A G 1211 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=13.16;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1244,138,0 chrXIV 46932 . T G 1176 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=12.78;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1209,138,0 chrXIV 46936 . T C 1142 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=12.41;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1175,129,0 chrXIV 46946 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=13.08;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1210,135,0 chrXIV 46970 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=16.06;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1430,156,0 chrXIV 47216 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.82;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2224,237,0 chrXIV 47497 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.88;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1499,168,0 chrXIV 47516 . A G 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.909;QD=17.89;ReadPosRankSum=1.689;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1464,171,0 chrXIV 47746 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.43;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1662,183,0 chrXIV 47837 . T A 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4962;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.082;QD=22.79;ReadPosRankSum=1.677;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1469,162,0 chrXIV 47964 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.2317;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.59;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2278,252,0 chrXIV 48338 . T C 2292 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=19.76;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2325,264,0 chrXIV 48348 . T C 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=4.196;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;MQRankSum=-0.383;QD=18.42;ReadPosRankSum=1.701;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2114,243,0 chrXIV 48359 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=18.72;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1811,198,0 chrXIV 48383 . G C 887 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=12.86;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:920,108,0 chrXIV 48389 . G A 736 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=13.38;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:84:769,84,0 chrXIV 48399 . C T 676 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;QD=13.00;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:709,81,0 chrXIV 48463 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.49;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1473,162,0 chrXIV 48511 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.78;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1479,171,0 chrXIV 48550 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1789,198,0 chrXIV 49150 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.80;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1934,222,0 chrXIV 49174 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0143;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.52;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1996,231,0 chrXIV 49293 . G T 1361 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.60;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1394,156,0 chrXIV 49325 . G A 1082 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.42;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1115,123,0 chrXIV 49631 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.12;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1420,159,0 chrXIV 49660 . T C 1133 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.27;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1166,132,0 chrXIV 49715 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.44;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1137,132,0 chrXIV 50444 . A G 2110 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2143,246,0 chrXIV 50736 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=14.29;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1505,168,0 chrXIV 51050 . C A 1299 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1332,147,0 chrXIV 51548 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.68;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1434,162,0 chrXIV 51986 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.51;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1756,192,0 chrXIV 52243 . C T 2083 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.65;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2116,231,0 chrXIV 52659 . G T 1414 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1447,165,0 chrXIV 52709 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1784,201,0 chrXIV 52856 . A G 1543 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.37;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1576,183,0 chrXIV 53465 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.8062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.92;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1520,168,0 chrXIV 53556 . A G 1822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=122;Dels=0.00;FS=9.124;HaplotypeScore=13.5978;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.421;QD=14.93;ReadPosRankSum=2.409;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:1855,219,0 chrXIV 53675 . T C 2427 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.7664;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.92;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2460,285,0 chrXIV 53756 . G A 2207 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.36;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2240,261,0 chrXIV 54162 . C T 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=4.082;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.462;QD=19.52;ReadPosRankSum=1.462;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1282,138,0 chrXIV 54362 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=16.73;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1422,156,0 chrXIV 54428 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.18;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1354,150,0 chrXIV 54509 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=15.89;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1082,123,0 chrXIV 54668 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.09;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1339,150,0 chrXIV 54694 . T C 996 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.60;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1029,114,0 chrXIV 54722 . A G 633 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=11.51;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:666,75,0 chrXIV 54935 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.20;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1325,150,0 chrXIV 54995 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.89;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1600,183,0 chrXIV 55037 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.35;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1542,180,0 chrXIV 55235 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.53;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1174,135,0 chrXIV 55368 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.08;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1718,189,0 chrXIV 55631 . G A 1213 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.66;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1246,141,0 chrXIV 55783 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.03;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1055,117,0 chrXIV 55822 . T C 753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=46;Dels=0.00;FS=6.118;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.578;QD=16.37;ReadPosRankSum=1.655;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,44:46:90:786,90,0 chrXIV 55838 . G A 746 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=17.76;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:779,87,0 chrXIV 55899 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.14;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1009,111,0 chrXIV 55969 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.65;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1212,138,0 chrXIV 56021 . G T 988 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.37;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1021,111,0 chrXIV 56281 . A G 310 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.24;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:39:343,39,0 chrXIV 56359 . T A 315 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.53;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:348,39,0 chrXIV 56462 . G T 709 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:81:742,81,0 chrXIV 56917 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.7401;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.29;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:85:99:1588,171,0 chrXIV 57579 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.23;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1956,216,0 chrXIV 57838 . A G 1906 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.25;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1939,216,0 chrXIV 57896 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.94;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2776,303,0 chrXIV 57930 . G A 2889 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.78;SB=-1.436e+03 GT:AD:DP:GQ:PL 1/1:0,136:139:99:2922,321,0 chrXIV 58009 . G T 2065 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.77;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2098,237,0 chrXIV 58013 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=15.55;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1868,216,0 chrXIV 58106 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.77;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1951,222,0 chrXIV 58114 . A G 1770 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;MQRankSum=-0.037;QD=18.83;ReadPosRankSum=1.658;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1803,201,0 chrXIV 58117 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.92;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1774,201,0 chrXIV 58181 . C G 1787 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=17.69;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1820,207,0 chrXIV 58193 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.06;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1875,207,0 chrXIV 58281 . G A 3315.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.8923;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.55;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:3315,360,0 chrXIV 58317 . T C 3518.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.9468;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.133;QD=22.41;ReadPosRankSum=1.710;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,155:157:99:3518,396,0 chrXIV 58511 . C T 3110 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.0979;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.38;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3143,339,0 chrXIV 59318 . A C 2166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7917;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.889;QD=18.83;ReadPosRankSum=1.672;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2199,258,0 chrXIV 59823 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.01;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2771,318,0 chrXIV 59998 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.76;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1021,111,0 chrXIV 60029 . T C 978 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.213;QD=17.16;ReadPosRankSum=1.672;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1011,114,0 chrXIV 60034 . A T 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=6.785;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-1.763;QD=18.96;ReadPosRankSum=2.359;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1057,117,0 chrXIV 60098 . G C 1255 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.73;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1288,150,0 chrXIV 60302 . C T 3280.01 PASS AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.52;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,168:168:99:3280,366,0 chrXIV 60311 . G A 3001 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.3221;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.76;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,159:160:99:3034,336,0 chrXIV 60473 . G T 1604 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.39;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1637,180,0 chrXIV 60629 . C T 3386.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.30;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,154:159:99:3386,369,0 chrXIV 60667 . C T 3975.01 PASS AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=11.6086;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.28;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,196:196:99:3975,444,0 chrXIV 60881 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.30;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1906,219,0 chrXIV 61469 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.28;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1716,186,0 chrXIV 61570 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.11;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1231,141,0 chrXIV 61714 . G C 772 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=15.44;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:96:805,96,0 chrXIV 61731 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.17;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:926,102,0 chrXIV 62535 . T A 906 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=53.1050;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=13.32;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:939,108,0 chrXIV 62564 . G A 784 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=12.44;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:90:817,90,0 chrXIV 62649 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.917;QD=17.80;ReadPosRankSum=1.597;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:941,111,0 chrXIV 62725 . A C 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.11;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1280,144,0 chrXIV 62825 . A T 1374 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=18.08;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1407,156,0 chrXIV 62842 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=13.71;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1253,141,0 chrXIV 63085 . T A 2449 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=22.89;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2482,270,0 chrXIV 63141 . A T 915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;MQRankSum=-1.678;QD=14.08;ReadPosRankSum=1.407;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:948,108,0 chrXIV 63142 . A T 863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;MQRankSum=-1.732;QD=13.70;ReadPosRankSum=1.677;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:896,102,0 chrXIV 63184 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=14.63;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1174,135,0 chrXIV 63207 . T G 1438 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=14.67;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1471,171,0 chrXIV 63313 . G T 1702 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=82.8328;MLEAC=2;MLEAF=1.00;MQ=39.99;MQ0=0;QD=19.79;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1735,186,0 chrXIV 63403 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.72;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1621,180,0 chrXIV 63531 . A G 1644 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.55;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1677,189,0 chrXIV 64357 . T C 609 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.92;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:642,75,0 chrXIV 64820 . C A 958 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.83;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:991,108,0 chrXIV 64851 . G T 960 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.78;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:993,114,0 chrXIV 64966 . G A 761 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.56;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:794,87,0 chrXIV 64994 . T G 532 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-1.056;QD=12.98;ReadPosRankSum=1.648;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:66:565,66,0 chrXIV 65000 . G A 644 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=14.98;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:677,75,0 chrXIV 65061 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.405;QD=20.23;ReadPosRankSum=1.602;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1105,126,0 chrXIV 65224 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.5964;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.07;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1578,180,0 chrXIV 65512 . C A 1751 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.67;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1784,195,0 chrXIV 65527 . A T 1570 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.592;QD=19.62;ReadPosRankSum=1.644;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1603,177,0 chrXIV 65618 . T G 1731 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=14.07;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:1764,204,0 chrXIV 65630 . A C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.637;DP=126;Dels=0.00;FS=9.678;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=-0.363;QD=13.17;ReadPosRankSum=2.928;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:3,122:126:99:1693,192,0 chrXIV 65647 . A T 2037 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.41;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2070,231,0 chrXIV 65688 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.86;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1919,216,0 chrXIV 65803 . C A 3094 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.62;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,130:131:99:3127,342,0 chrXIV 66215 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,123:126:99:2487,267,0 chrXIV 66910 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.87;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1848,204,0 chrXIV 67140 . C T 1400 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.54;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1433,165,0 chrXIV 67383 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.74;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1319,147,0 chrXIV 68040 . G C 771 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.52;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:804,90,0 chrXIV 68221 . T A 1134 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.90;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1167,129,0 chrXIV 68234 . T A 1009 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.40;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1042,114,0 chrXIV 68498 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.78;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1993,222,0 chrXIV 69145 . A C 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9466;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.594;QD=16.93;ReadPosRankSum=1.686;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1303,147,0 chrXIV 69775 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.35;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1437,162,0 chrXIV 69925 . T C 1223 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.84;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1256,147,0 chrXIV 70054 . A G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.991;DP=91;Dels=0.00;FS=2.336;HaplotypeScore=10.0705;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.261;QD=19.59;ReadPosRankSum=2.352;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:4,87:91:99:1816,190,0 chrXIV 70114 . C T 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.2062;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.347;QD=19.15;ReadPosRankSum=0.880;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2446,270,0 chrXIV 70291 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.0298;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.31;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2311,255,0 chrXIV 70533 . C T 2552 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.04;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2585,288,0 chrXIV 70597 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.72;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,130:131:99:2485,270,0 chrXIV 70669 . G C 2087 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4664;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.69;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2120,237,0 chrXIV 71495 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.34;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1767,198,0 chrXIV 71614 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.71;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1661,183,0 chrXIV 71751 . G C 1286 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.78;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1319,153,0 chrXIV 71784 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1677,183,0 chrXIV 72005 . T A 1519 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.70;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1552,168,0 chrXIV 72483 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.43;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1439,156,0 chrXIV 73212 . T C 1298 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.770;QD=17.54;ReadPosRankSum=1.684;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,71:74:99:1331,153,0 chrXIV 73224 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.51;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1364,156,0 chrXIV 73308 . A T 1561 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.81;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1594,177,0 chrXIV 73491 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.59;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1669,186,0 chrXIV 73598 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.95;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,186,0 chrXIV 74187 . T C 1860 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.00;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1893,216,0 chrXIV 74211 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.51;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1532,177,0 chrXIV 74437 . T G 1373 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.80;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1406,159,0 chrXIV 74523 . A C 757 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:790,93,0 chrXIV 74571 . A T 1067 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.92;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1100,120,0 chrXIV 74607 . T A 934 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.24;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:967,105,0 chrXIV 74669 . T A 1232 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1265,135,0 chrXIV 75636 . C T 1921 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.87;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1954,219,0 chrXIV 75675 . G A 1906 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.96;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1939,210,0 chrXIV 75987 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8931;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.32;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2390,273,0 chrXIV 76810 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.31;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2666,297,0 chrXIV 77006 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4068;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=16.81;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:1966,222,0 chrXIV 77017 . A T 1987 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=15.17;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2020,231,0 chrXIV 77028 . G T 1899 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=16.09;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1932,213,0 chrXIV 77029 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=15.42;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1853,210,0 chrXIV 77065 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=16.61;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2060,228,0 chrXIV 77179 . T C 2262 SnpCluster AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.94;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2295,261,0 chrXIV 77182 . G A 2328 SnpCluster AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.16;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2361,261,0 chrXIV 77185 . T C 2304 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.69;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2337,267,0 chrXIV 77306 . T C 2153 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.20;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2186,246,0 chrXIV 77413 . G A 1479 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5420;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.72;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1512,165,0 chrXIV 77910 . A T 1318 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.97;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1351,147,0 chrXIV 77941 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.25;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1246,141,0 chrXIV 78106 . T C 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.294;QD=20.27;ReadPosRankSum=2.372;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1310,150,0 chrXIV 78360 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.26;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1348,156,0 chrXIV 78364 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.94;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1337,153,0 chrXIV 78386 . C A 1371 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8245;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=15.07;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:1404,153,0 chrXIV 79032 . A T 2919 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4477;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2952,318,0 chrXIV 79085 . T A 2223 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.52;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2256,252,0 chrXIV 79165 . A G 1602 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=14.56;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1635,183,0 chrXIV 79183 . G T 1530 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=13.19;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1563,180,0 chrXIV 79250 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=15.60;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1375,153,0 chrXIV 79325 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=3.033;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.038;QD=17.97;ReadPosRankSum=2.394;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1650,186,0 chrXIV 79834 . A G 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=4.7874;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.287;QD=18.94;ReadPosRankSum=1.683;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1359,153,0 chrXIV 80375 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.89;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2070,228,0 chrXIV 80433 . C G 1718 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.67;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1751,201,0 chrXIV 81581 . T A 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.505;QD=20.04;ReadPosRankSum=1.660;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:995,111,0 chrXIV 81857 . A C 1236 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2451;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1269,147,0 chrXIV 82505 . G T 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=3.188;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.594;QD=21.63;ReadPosRankSum=1.525;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1136,129,0 chrXIV 82767 . T C 1186 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.56;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1219,141,0 chrXIV 82802 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.85;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1381,150,0 chrXIV 83036 . G A 1258 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.66;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1291,150,0 chrXIV 83130 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.01;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1614,177,0 chrXIV 83228 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.00;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1650,180,0 chrXIV 83714 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1396,162,0 chrXIV 84464 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.49;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1670,189,0 chrXIV 84727 . G A 1630 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.18;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1663,183,0 chrXIV 84728 . A G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.447;QD=18.66;ReadPosRankSum=1.651;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1619,183,0 chrXIV 84877 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.27;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1229,135,0 chrXIV 85081 . G A 2588 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.57;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2621,288,0 chrXIV 85192 . T C 1388 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1421,162,0 chrXIV 85237 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=19.75;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1534,174,0 chrXIV 85261 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.01;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1483,165,0 chrXIV 85288 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=16.62;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1180,135,0 chrXIV 85300 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.65;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1165,126,0 chrXIV 85381 . G A 2223 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.78;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2256,240,0 chrXIV 85405 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.39;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1990,228,0 chrXIV 85706 . A T 2568 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.40;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2601,297,0 chrXIV 85777 . T C 2525 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.17;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2558,294,0 chrXIV 85954 . T C 570 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=12.95;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:69:603,69,0 chrXIV 85958 . C T 745 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=15.52;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:778,87,0 chrXIV 86022 . A G 1946 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.66;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1979,225,0 chrXIV 86042 . G T 1919 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.78;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1952,210,0 chrXIV 86180 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-0.234;QD=16.57;ReadPosRankSum=1.685;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1292,147,0 chrXIV 86183 . T A 1208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.832;DP=81;Dels=0.00;FS=7.662;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.514;QD=14.91;ReadPosRankSum=4.048;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:6,75:81:99:1241,141,0 chrXIV 86400 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.3765;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.79;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2299,264,0 chrXIV 87310 . A G 2388 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.07;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2421,273,0 chrXIV 88950 . C T 850 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.00;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:96:883,96,0 chrXIV 88974 . T C 971 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.11;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1004,117,0 chrXIV 89040 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.02;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1486,162,0 chrXIV 89169 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1186,138,0 chrXIV 89430 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.62;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1727,198,0 chrXIV 89494 . A G 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.206;QD=23.58;ReadPosRankSum=1.674;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1424,159,0 chrXIV 89776 . C T 2176 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8666;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.40;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2209,243,0 chrXIV 89837 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.10;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1789,192,0 chrXIV 89854 . A C 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.647;QD=18.11;ReadPosRankSum=1.604;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1500,168,0 chrXIV 89959 . T C 2352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.019;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-1.085;QD=23.29;ReadPosRankSum=2.401;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2385,270,0 chrXIV 89975 . G T 2283 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.06;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2316,252,0 chrXIV 90031 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.04;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1948,216,0 chrXIV 90277 . A G 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.404;QD=17.46;ReadPosRankSum=1.696;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,94:98:99:1744,195,0 chrXIV 90414 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=2.809;HaplotypeScore=8.8643;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.086;QD=20.70;ReadPosRankSum=2.334;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2683,300,0 chrXIV 90956 . C T 2471 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.93;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2504,279,0 chrXIV 91169 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.72;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1966,213,0 chrXIV 92476 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.79;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1118,129,0 chrXIV 92908 . A T 1316 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.89;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1349,150,0 chrXIV 93046 . T C 1732 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.91;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1765,204,0 chrXIV 93328 . A G 1586 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.716;QD=21.15;ReadPosRankSum=1.640;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1619,192,0 chrXIV 93790 . T C 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.931;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.058;QD=20.82;ReadPosRankSum=1.693;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1907,225,0 chrXIV 93892 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.29;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:966,111,0 chrXIV 94390 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.18;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1473,165,0 chrXIV 94480 . T A 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.79;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,219,0 chrXIV 94896 . A C 996 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=60.70;MQ0=0;QD=17.17;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1029,117,0 chrXIV 95495 . T C 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9276;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.015;QD=20.62;ReadPosRankSum=1.673;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1229,138,0 chrXIV 95510 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.81;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1049,114,0 chrXIV 95692 . G A 1842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.958;QD=19.19;ReadPosRankSum=1.290;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1875,207,0 chrXIV 95727 . G C 1828 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.25;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,103:106:99:1861,210,0 chrXIV 96083 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.02;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2169,240,0 chrXIV 96181 . C A 2645 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=21.16;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2678,306,0 chrXIV 96228 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=21.49;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2053,237,0 chrXIV 96396 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=21.30;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1822,198,0 chrXIV 96482 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=19.81;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1776,210,0 chrXIV 96530 . C A 930 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=13.88;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:963,117,0 chrXIV 96555 . A G 600 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=0;MQRankSum=-1.732;QD=11.54;ReadPosRankSum=1.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,51:52:81:633,81,0 chrXIV 96572 . T C 506 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=0;QD=11.24;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:69:539,69,0 chrXIV 99247 . A C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=12.68;MQ0=9;QD=0.79;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:6:47,6,0 chrXIV 100939 . C T 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=23.76;MQ0=13;MQRankSum=-0.151;QD=0.92;ReadPosRankSum=0.554;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,18:49:75:75,0,185 chrXIV 100944 . T G 401 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=63;Dels=0.00;FS=4.416;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=13;MQRankSum=-1.143;QD=6.37;ReadPosRankSum=1.659;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:1,59:63:51:434,51,0 chrXIV 100973 . T C 1234 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=102;Dels=0.00;FS=21.922;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=15;MQRankSum=-2.106;QD=12.10;ReadPosRankSum=3.730;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:5,97:102:99:1267,150,0 chrXIV 101054 . T C 1469 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.85;MQ0=11;QD=16.69;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1502,177,0 chrXIV 101111 . G A 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXIV 101238 . A G 2460 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.168;DP=145;Dels=0.00;FS=5.190;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=25;MQRankSum=3.165;QD=16.97;ReadPosRankSum=-0.519;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:4,141:145:99:2493,287,0 chrXIV 101393 . G A 432 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=6;MQRankSum=-1.733;QD=13.94;ReadPosRankSum=-0.901;SB=-6.552e-03 GT:AD:DP:GQ:PL 1/1:1,30:31:54:465,54,0 chrXIV 101412 . G T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.04;MQ0=12;MQRankSum=-2.700;QD=1.00;ReadPosRankSum=0.433;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,12:36:66:66,0,234 chrXIV 101438 . C T 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=35;Dels=0.00;FS=14.548;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=12;MQRankSum=-1.773;QD=4.06;ReadPosRankSum=0.854;SB=-9.250e+01 GT:AD:DP:GQ:PL 0/1:13,21:35:99:172,0,140 chrXIV 101453 . T C 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;DP=34;Dels=0.00;FS=17.433;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.79;MQ0=14;MQRankSum=2.149;QD=1.15;ReadPosRankSum=-0.482;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,7:34:69:69,0,186 chrXIV 101454 . T C 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;DP=35;Dels=0.00;FS=18.340;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=14;MQRankSum=-0.238;QD=4.34;ReadPosRankSum=0.872;SB=-7.775e+01 GT:AD:DP:GQ:PL 0/1:8,26:35:71:182,0,71 chrXIV 101505 . G A 233 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.07;MQ0=23;QD=4.85;SB=-7.395e+01 GT:AD:DP:GQ:PL 1/1:0,46:48:30:266,30,0 chrXIV 101621 . T C 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.632;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=12.4071;MLEAC=1;MLEAF=0.500;MQ=14.94;MQ0=26;MQRankSum=0.010;QD=0.87;ReadPosRankSum=-0.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,32:77:97:97,0,203 chrXIV 101804 . A G 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=0;QD=2.28;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,10:10:6:54,6,0 chrXIV 101808 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=2.25;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:56,6,0 chrXIV 101814 . G C 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=0;QD=1.65;SB=-1.706e+00 GT:AD:DP:GQ:PL 1/1:0,11:12:6:51,6,0 chrXIV 101816 . C T 27.77 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=0;QD=2.31;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:59,6,0 chrXIV 101825 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=0;QD=1.65;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:51,6,0 chrXIV 101830 . A G 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=0;QD=1.57;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrXIV 101833 . G A 18.82 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=0;QD=1.57;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,12:12:6:50,6,0 chrXIV 102681 . C T 733 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:87:766,87,0 chrXIV 102872 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=0.062;QD=19.14;ReadPosRankSum=1.670;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1105,123,0 chrXIV 102898 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=21.35;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1698,189,0 chrXIV 102906 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=20.75;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1672,189,0 chrXIV 103428 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1669,180,0 chrXIV 103902 . T G 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.228;QD=19.70;ReadPosRankSum=0.346;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,54:57:99:1156,132,0 chrXIV 104301 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=20.96;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1458,165,0 chrXIV 104403 . T A 973 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.63;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1006,111,0 chrXIV 104623 . C T 801 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=15.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:51:93:834,93,0 chrXIV 104785 . C T 2056 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.48;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2089,234,0 chrXIV 104863 . A C 1744 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=24.91;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1777,204,0 chrXIV 104993 . C T 2894 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8357;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.60;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2927,324,0 chrXIV 105379 . T C 2126 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.87;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2159,249,0 chrXIV 105839 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=15.0291;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.72;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,122:126:99:2266,249,0 chrXIV 106004 . T G 1635 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.19;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1668,189,0 chrXIV 106135 . T C 2783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=8.218;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.394;QD=21.74;ReadPosRankSum=2.315;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2816,330,0 chrXIV 106786 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.62;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1206,135,0 chrXIV 106801 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.60;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1307,144,0 chrXIV 106872 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.1712;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.43;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1361,150,0 chrXIV 107060 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=19.94;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:990,108,0 chrXIV 107345 . T C 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.459;DP=47;Dels=0.00;FS=2.667;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-2.894;QD=17.21;ReadPosRankSum=2.851;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:96:842,96,0 chrXIV 107440 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=16.26;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1204,138,0 chrXIV 107444 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=15.68;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1178,132,0 chrXIV 107486 . G C 1511 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=16.79;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1544,180,0 chrXIV 107671 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.82;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1245,141,0 chrXIV 107683 . T A 1087 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.53;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1120,123,0 chrXIV 107833 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.75;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1435,156,0 chrXIV 107852 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.33;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1578,180,0 chrXIV 107916 . A G 1757 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.96;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1790,207,0 chrXIV 108148 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=15.79;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1170,135,0 chrXIV 108312 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.64;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1977,225,0 chrXIV 108405 . A T 2546 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.72;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2579,288,0 chrXIV 108436 . T A 2051 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.54;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2084,228,0 chrXIV 108442 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=21.47;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1815,204,0 chrXIV 108588 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=80;Dels=0.00;FS=4.393;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.552;QD=21.25;ReadPosRankSum=1.642;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,76:80:99:1733,192,0 chrXIV 108679 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=15.85;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1570,180,0 chrXIV 109033 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.10;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2502,282,0 chrXIV 109383 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.87;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2176,246,0 chrXIV 109413 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3365;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.71;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2083,228,0 chrXIV 109509 . G A 2034 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=23.65;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2067,225,0 chrXIV 109533 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.76;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1943,222,0 chrXIV 109881 . A G 2397 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2430,285,0 chrXIV 110421 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.82;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1595,174,0 chrXIV 110712 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=16.30;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:962,111,0 chrXIV 110734 . T C 605 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=11.63;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:72:638,72,0 chrXIV 110852 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4312;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.63;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1947,213,0 chrXIV 110882 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.9002;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.54;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:76:99:1670,189,0 chrXIV 111039 . A G 1888 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.6789;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.75;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1921,216,0 chrXIV 111222 . G C 1830 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.33;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1863,210,0 chrXIV 111267 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.52;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1868,204,0 chrXIV 111323 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.93;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1699,192,0 chrXIV 111795 . T A 2242 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.60;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2275,249,0 chrXIV 112128 . A T 2146 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.68;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2179,246,0 chrXIV 112194 . T C 1823 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6592;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.39;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1856,216,0 chrXIV 112491 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.34;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1638,186,0 chrXIV 112669 . A G 793 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.55;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:826,96,0 chrXIV 112869 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=12.01;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:93:862,93,0 chrXIV 112944 . T C 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.433;QD=17.94;ReadPosRankSum=1.684;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1325,153,0 chrXIV 113198 . T C 1592 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1625,186,0 chrXIV 113311 . T C 629 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=12.58;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:75:662,75,0 chrXIV 113360 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1140,126,0 chrXIV 113721 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.87;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1677,183,0 chrXIV 113960 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.12;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1723,198,0 chrXIV 113969 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.69;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1626,177,0 chrXIV 114209 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.86;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1551,177,0 chrXIV 114221 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.61;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1578,177,0 chrXIV 114314 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.00;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1793,207,0 chrXIV 114795 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.90;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1747,201,0 chrXIV 114824 . T C 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.590;QD=20.46;ReadPosRankSum=1.685;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1547,174,0 chrXIV 114893 . G C 1098 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.30;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1131,129,0 chrXIV 115028 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.78;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1176,129,0 chrXIV 115059 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=17.58;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:965,105,0 chrXIV 115067 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=16.47;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:906,99,0 chrXIV 115150 . G C 1760 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.95;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1793,207,0 chrXIV 115292 . T C 1135 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.83;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1168,132,0 chrXIV 115349 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.64;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1548,174,0 chrXIV 115483 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6122;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.24;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2300,246,0 chrXIV 115637 . C T 1671 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.42;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1704,189,0 chrXIV 115655 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.51;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1756,192,0 chrXIV 115691 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.95;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1330,150,0 chrXIV 115793 . A G 816 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=12.00;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:849,96,0 chrXIV 115811 . C T 720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=74;Dels=0.00;FS=5.789;HaplotypeScore=4.8849;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.125;QD=9.73;ReadPosRankSum=-0.820;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:4,70:74:84:753,84,0 chrXIV 116041 . C G 1300 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=13.54;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1333,150,0 chrXIV 116051 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.9389;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=15.28;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:1607,180,0 chrXIV 116117 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=13.91;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1257,147,0 chrXIV 116131 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.54;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1572,180,0 chrXIV 116676 . C T 865 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.30;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:898,102,0 chrXIV 116678 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=15.85;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:889,102,0 chrXIV 116758 . G A 594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9638;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.866;QD=14.85;ReadPosRankSum=-0.606;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:66:627,66,0 chrXIV 116796 . A C 304 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=11.26;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,25:27:39:337,39,0 chrXIV 116881 . T C 912 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:945,108,0 chrXIV 116975 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.03;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:737,81,0 chrXIV 116976 . T C 639 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.27;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:672,78,0 chrXIV 117210 . G A 1045 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.10;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:52:99:1078,114,0 chrXIV 117253 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.12;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:951,108,0 chrXIV 117717 . G T 2752 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.74;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2785,309,0 chrXIV 117759 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.91;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2599,285,0 chrXIV 117786 . T C 2259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.109;QD=22.59;ReadPosRankSum=1.663;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2292,258,0 chrXIV 117840 . G A 2096 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.75;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2129,234,0 chrXIV 117954 . T C 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.848;QD=21.76;ReadPosRankSum=1.548;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2078,231,0 chrXIV 118227 . C T 2035 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.67;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2068,228,0 chrXIV 118233 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=15.19;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1643,189,0 chrXIV 118249 . G C 1970 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=17.28;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2003,234,0 chrXIV 118969 . A G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6191;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=-0.650;QD=15.92;ReadPosRankSum=1.588;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:2,95:98:99:1593,183,0 chrXIV 118999 . A C 10.50 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.105;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=257.2572;MLEAC=1;MLEAF=0.500;MQ=31.37;MQ0=0;MQRankSum=0.373;QD=0.14;ReadPosRankSum=-3.342;SB=-2.209e+01 GT:AD:DP:GQ:PL 0/1:70,7:77:14:40,0,14 chrXIV 119007 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.31;SB=-4.368e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:6:55,6,0 chrXIV 119025 . C T 368 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=69.8383;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.33;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:45:401,45,0 chrXIV 119044 . T C 590 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=6.34;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:69:623,69,0 chrXIV 119074 . G A 765 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=8.23;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:90:798,90,0 chrXIV 119076 . T C 775 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;MQRankSum=-1.437;QD=8.24;ReadPosRankSum=1.695;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:90:808,90,0 chrXIV 119077 . G A 758 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=7.98;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:87:791,87,0 chrXIV 119098 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=11.31;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1017,120,0 chrXIV 119174 . T C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.895;QD=23.36;ReadPosRankSum=1.674;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2836,324,0 chrXIV 119261 . G A 2678 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.50;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2711,291,0 chrXIV 119276 . T A 2481 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.69;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2514,276,0 chrXIV 119900 . C A 1416 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.52;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1449,171,0 chrXIV 120092 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.50;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1710,198,0 chrXIV 120282 . T A 2264 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.64;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2297,249,0 chrXIV 120476 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.20;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1166,135,0 chrXIV 120704 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.17;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1720,195,0 chrXIV 121001 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.19;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1047,117,0 chrXIV 121002 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=15.38;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:956,111,0 chrXIV 121106 . T C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.524;QD=18.58;ReadPosRankSum=1.700;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2058,240,0 chrXIV 121108 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=19.65;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,110:113:99:2254,240,0 chrXIV 121289 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.48;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1337,144,0 chrXIV 121385 . G T 1942 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.62;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1975,216,0 chrXIV 121394 . G A 1986 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.28;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2019,222,0 chrXIV 121510 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.4637;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.89;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1929,213,0 chrXIV 121562 . C T 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.161;QD=21.87;ReadPosRankSum=0.818;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2023,222,0 chrXIV 121736 . G C 1630 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.40;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1663,189,0 chrXIV 121799 . T A 1840 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.3073;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.67;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1873,204,0 chrXIV 121847 . A G 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-1.485;QD=19.70;ReadPosRankSum=1.650;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1688,198,0 chrXIV 121853 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.91;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1745,189,0 chrXIV 122436 . T A 1951 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1984,216,0 chrXIV 122520 . C T 2081 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.2995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.27;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2114,240,0 chrXIV 123338 . C T 1547 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.34;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1580,177,0 chrXIV 123423 . A C 1111 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.36;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1144,132,0 chrXIV 123426 . T C 1113 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.12;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1146,129,0 chrXIV 123680 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.15;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1887,207,0 chrXIV 123719 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.87;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1524,168,0 chrXIV 123896 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.417;QD=19.00;ReadPosRankSum=1.669;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1078,123,0 chrXIV 123919 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.89;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1080,117,0 chrXIV 124154 . T C 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=3.090;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.419;QD=19.11;ReadPosRankSum=2.362;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1103,123,0 chrXIV 124172 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.36;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1144,126,0 chrXIV 124235 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.25;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1496,165,0 chrXIV 124290 . T C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.285;QD=22.82;ReadPosRankSum=1.621;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1448,162,0 chrXIV 124329 . G A 1874 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.05;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1907,216,0 chrXIV 124370 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2079,240,0 chrXIV 124433 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.75;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1755,201,0 chrXIV 124634 . C G 1325 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.43;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1358,156,0 chrXIV 124765 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=11.8346;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.64;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2370,258,0 chrXIV 124988 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.84;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1431,159,0 chrXIV 125337 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.16;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1522,177,0 chrXIV 125661 . T A 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=22.8916;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.658;QD=18.92;ReadPosRankSum=1.622;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1887,210,0 chrXIV 126226 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.90;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2186,240,0 chrXIV 126305 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=16.98;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1901,213,0 chrXIV 126707 . G C 2166 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.34;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2199,252,0 chrXIV 126744 . G A 2266 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2299,255,0 chrXIV 126981 . T C 1072 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.82;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1105,123,0 chrXIV 127238 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.95;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1440,159,0 chrXIV 127240 . G A 1354 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=17.14;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1387,153,0 chrXIV 127270 . T C 1111 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=14.06;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1144,135,0 chrXIV 127345 . A T 1434 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.92;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1467,165,0 chrXIV 127464 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.01;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1374,153,0 chrXIV 128152 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2058,240,0 chrXIV 128224 . G T 1390 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.05;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1423,165,0 chrXIV 128256 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=14.76;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1155,132,0 chrXIV 128407 . A G 2982 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=11.8989;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.12;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:3015,336,0 chrXIV 128581 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.337;QD=19.33;ReadPosRankSum=1.684;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1425,162,0 chrXIV 128629 . C T 2029 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2062,225,0 chrXIV 128889 . A G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.261;QD=19.40;ReadPosRankSum=1.637;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1449,165,0 chrXIV 128908 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=16.89;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1401,159,0 chrXIV 129103 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1085,120,0 chrXIV 129262 . G A 908 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:941,102,0 chrXIV 129503 . A G 1044 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.20;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1077,123,0 chrXIV 129702 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.45;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1041,123,0 chrXIV 129768 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=19.06;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1272,144,0 chrXIV 129800 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=17.89;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1339,153,0 chrXIV 129975 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1435,162,0 chrXIV 130095 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=16.70;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1102,126,0 chrXIV 130617 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.12;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1216,138,0 chrXIV 130662 . T A 991 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.05;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1024,111,0 chrXIV 130851 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.90;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1406,153,0 chrXIV 130860 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.58;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1185,129,0 chrXIV 130982 . A G 1004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=2.893;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.315;QD=19.69;ReadPosRankSum=2.159;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1037,117,0 chrXIV 131762 . C T 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=4.690;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.556;QD=16.72;ReadPosRankSum=1.405;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:936,102,0 chrXIV 131766 . T C 920 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.43;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:953,108,0 chrXIV 131840 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.30;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1170,129,0 chrXIV 132054 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.41;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1211,141,0 chrXIV 132063 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.57;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1207,132,0 chrXIV 132432 . G A 796 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=15.92;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:829,93,0 chrXIV 132587 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.90;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1544,171,0 chrXIV 132840 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=14.25;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:90:817,90,0 chrXIV 132846 . T C 812 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=15.32;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:845,99,0 chrXIV 133032 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.89;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1266,141,0 chrXIV 133191 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.85;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1453,162,0 chrXIV 133596 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.72;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1315,144,0 chrXIV 133716 . A G 829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.181;QD=18.84;ReadPosRankSum=1.654;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:862,99,0 chrXIV 134481 . T C 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.979;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.669;QD=18.75;ReadPosRankSum=1.669;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1064,120,0 chrXIV 134547 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.80;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1122,126,0 chrXIV 134870 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=6.154;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.157;QD=22.29;ReadPosRankSum=1.680;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1504,174,0 chrXIV 134952 . C G 927 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.72;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:960,105,0 chrXIV 134964 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.14;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:837,90,0 chrXIV 135060 . A C 1380 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.91;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1413,159,0 chrXIV 135252 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1231,135,0 chrXIV 135401 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.19;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1850,204,0 chrXIV 135494 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.74;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1692,186,0 chrXIV 135598 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.82;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:866,96,0 chrXIV 135752 . A G 512 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.29;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:63:545,63,0 chrXIV 135883 . C T 282 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=3.7150;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=10.07;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:36:315,36,0 chrXIV 135928 . A G 359 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=8.55;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:48:392,48,0 chrXIV 135949 . G A 799 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=13.78;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:90:832,90,0 chrXIV 136113 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.60;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1063,123,0 chrXIV 136345 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.13;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1704,198,0 chrXIV 136375 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=18.88;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1128,129,0 chrXIV 136579 . A G 1937 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.77;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1970,228,0 chrXIV 136597 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.79;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2006,228,0 chrXIV 136765 . A C 1065 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.48;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1098,126,0 chrXIV 136945 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.59;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1581,177,0 chrXIV 137110 . C A 2032 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=81;Dels=0.00;FS=4.407;HaplotypeScore=10.8543;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.689;QD=25.09;ReadPosRankSum=0.520;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2065,228,0 chrXIV 137209 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.11;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1482,162,0 chrXIV 137227 . T C 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.098;QD=17.40;ReadPosRankSum=1.690;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1460,168,0 chrXIV 137285 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.7254;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=1.550;QD=20.34;ReadPosRankSum=0.866;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1579,177,0 chrXIV 137407 . C G 1489 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.12;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1522,174,0 chrXIV 137422 . G T 1506 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.31;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1539,177,0 chrXIV 137796 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=21.48;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:978,111,0 chrXIV 137823 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=20.78;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1176,132,0 chrXIV 137884 . G A 720 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=19.46;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:753,84,0 chrXIV 137886 . C A 643 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=17.86;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:676,75,0 chrXIV 137905 . C T 415 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=15.37;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:448,54,0 chrXIV 137961 . A G 286 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.00;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:319,36,0 chrXIV 137974 . C T 306 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.30;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:339,39,0 chrXIV 137978 . G T 477 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.04;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:510,54,0 chrXIV 137983 . T A 370 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.76;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:403,45,0 chrXIV 137984 . T C 337 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.62;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:42:370,42,0 chrXIV 137990 . G C 350 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.50;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:383,42,0 chrXIV 137992 . T A 349 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.46;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:382,42,0 chrXIV 137996 . A G 336 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.00;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:42:369,42,0 chrXIV 138013 . A G 373 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=42.4930;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=7.04;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:48:406,48,0 chrXIV 138022 . T C 383 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=6.451;HaplotypeScore=49.8694;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-1.602;QD=7.09;ReadPosRankSum=1.667;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:48:416,48,0 chrXIV 138025 . T C 361 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=6.264;HaplotypeScore=50.6581;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=1.228;QD=6.56;ReadPosRankSum=1.669;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:45:394,45,0 chrXIV 138027 . A T 386 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=50.6581;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=-0.220;QD=7.02;ReadPosRankSum=1.669;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:45:419,45,0 chrXIV 138040 . C T 431 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.56;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:51:464,51,0 chrXIV 138041 . A G 413 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.25;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:51:446,51,0 chrXIV 138047 . C T 409 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=7.30;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:48:442,48,0 chrXIV 138052 . G A 213.01 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=31.7387;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=3.80;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:27:246,27,0 chrXIV 138057 . A C 179.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.113;DP=70;Dels=0.00;FS=7.247;HaplotypeScore=65.0647;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;MQRankSum=-0.525;QD=2.56;ReadPosRankSum=-5.989;SB=-6.801e+01 GT:AD:DP:GQ:PL 1/1:47,23:70:27:212,27,0 chrXIV 138067 . C A 182.03 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=33.5079;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=3.64;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:24:215,24,0 chrXIV 138082 . G A 201.01 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=5.29;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:27:234,27,0 chrXIV 138090 . A G 172.03 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=4.53;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:205,24,0 chrXIV 138102 . A G 42.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=36;Dels=0.00;FS=5.643;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=0.474;QD=1.19;ReadPosRankSum=1.423;SB=-5.095e+01 GT:AD:DP:GQ:PL 1/1:1,10:36:9:75,9,0 chrXIV 138108 . G T 18.07 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DP=34;Dels=0.00;FS=12.159;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.43;MQ0=0;MQRankSum=-1.378;QD=0.53;ReadPosRankSum=-3.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,6:34:48:48,0,172 chrXIV 138112 . A T 143.06 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.11;SB=-2.521e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:176,21,0 chrXIV 138120 . G A 236 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=7.87;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:269,30,0 chrXIV 138126 . C T 234 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=7.80;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:267,30,0 chrXIV 138141 . A G 223 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;QD=9.70;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:30:256,30,0 chrXIV 138144 . C G 201.01 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=9.57;SB=-8.102e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:27:234,27,0 chrXIV 138147 . A G 196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=9.80;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:229,27,0 chrXIV 138148 . A C 197.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=9.85;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:230,27,0 chrXIV 138155 . A G 225 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=10.23;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:30:258,30,0 chrXIV 138167 . G C 210.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=10.50;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:243,27,0 chrXIV 138168 . C T 196.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=9.80;SB=-5.302e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:229,27,0 chrXIV 138172 . G T 201.01 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=9.57;SB=-8.002e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:27:234,27,0 chrXIV 138175 . A G 192.01 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=9.14;SB=-7.602e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:27:225,27,0 chrXIV 138189 . G C 171.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=8.14;SB=-8.104e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:24:204,24,0 chrXIV 138190 . G A 179.03 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=8.53;SB=-8.204e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:24:212,24,0 chrXIV 138208 . T C 159.06 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=7.95;SB=-1.021e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:21:192,21,0 chrXIV 138222 . A T 130.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=0.116;QD=8.68;ReadPosRankSum=1.504;SB=-7.312e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:18:163,18,0 chrXIV 138230 . G A 131.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.09;SB=-7.713e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:164,18,0 chrXIV 138237 . T C 121.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.9813;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=8.65;SB=-7.113e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:154,18,0 chrXIV 138306 . C G 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:54,6,0 chrXIV 138307 . T G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.26;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:53,6,0 chrXIV 138357 . T C 488 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=18.77;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:521,57,0 chrXIV 138418 . G T 328 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=14.91;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:42:361,42,0 chrXIV 138435 . G A 160.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.34;SB=-3.207e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:193,21,0 chrXIV 138609 . T C 893 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=20.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:926,111,0 chrXIV 138615 . A G 853 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=20.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:886,108,0 chrXIV 138630 . A G 736 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=19.37;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:96:769,96,0 chrXIV 138636 . A G 387 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=13.82;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:54:420,54,0 chrXIV 138702 . T C 197 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=4.28;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:30:230,30,0 chrXIV 138751 . G A 579 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.72;MQ0=0;QD=10.53;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:75:612,75,0 chrXIV 138757 . A T 745 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=13.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:84:778,84,0 chrXIV 138797 . T C 481 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.09;MQ0=0;QD=10.23;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:60:514,60,0 chrXIV 138802 . G A 407 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=9.47;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:51:440,51,0 chrXIV 138817 . A C 318 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=7.95;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:42:351,42,0 chrXIV 138821 . A G 326 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;QD=8.15;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:42:359,42,0 chrXIV 138825 . T C 329 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=8.22;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:42:362,42,0 chrXIV 138826 . A G 312 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=0;QD=7.80;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:42:345,42,0 chrXIV 138867 . G C 1013 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2919;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=17.47;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1046,120,0 chrXIV 138888 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.64;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1349,153,0 chrXIV 138978 . G A 750 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=13.89;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:783,90,0 chrXIV 138981 . C T 786 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=14.83;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:96:819,96,0 chrXIV 138984 . G T 613 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.09;MQ0=0;QD=12.51;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:646,75,0 chrXIV 139008 . C T 462 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=12.49;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:495,63,0 chrXIV 139009 . A G 451 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=12.19;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:63:484,63,0 chrXIV 139041 . G A 573 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=11.94;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:75:606,75,0 chrXIV 139050 . G T 514 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=10.49;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:547,69,0 chrXIV 139092 . G A 1010 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=11.74;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1043,117,0 chrXIV 139119 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=11.68;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1096,126,0 chrXIV 139182 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=17.00;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1325,147,0 chrXIV 139206 . T C 1090 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=17.58;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1123,132,0 chrXIV 139218 . A G 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;MQRankSum=-0.082;QD=16.86;ReadPosRankSum=1.622;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1095,126,0 chrXIV 139254 . T C 984 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.4455;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=13.30;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1017,117,0 chrXIV 139269 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=14.13;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1008,108,0 chrXIV 139332 . G T 1306 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=16.96;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1339,147,0 chrXIV 139383 . C T 1114 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.02;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1147,129,0 chrXIV 139398 . G A 1068 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.94;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1101,117,0 chrXIV 139451 . G A 169.03 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;QD=5.28;SB=-4.802e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:24:202,24,0 chrXIV 139455 . A G 186.01 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.91;MQ0=0;QD=6.00;SB=-7.201e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:27:219,27,0 chrXIV 139476 . C T 376 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=9.64;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:48:409,48,0 chrXIV 139482 . C T 417 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;QD=9.27;SB=-1.470e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:450,51,0 chrXIV 139527 . G T 1137 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=18.05;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1170,135,0 chrXIV 139563 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;QD=14.68;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1119,126,0 chrXIV 139569 . A T 1103 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=15.99;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1136,132,0 chrXIV 139581 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=15.25;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1116,132,0 chrXIV 139614 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.075;QD=15.18;ReadPosRankSum=2.390;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:2,80:84:99:1308,150,0 chrXIV 139630 . A G 1453 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.09;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1486,171,0 chrXIV 139692 . A G 1626 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.821;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-1.253;QD=17.12;ReadPosRankSum=1.658;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1659,192,0 chrXIV 139695 . A G 1554 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.53;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1587,186,0 chrXIV 139698 . C T 1656 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.43;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1689,186,0 chrXIV 139830 . T C 890 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;MQRankSum=-0.264;QD=12.71;ReadPosRankSum=2.380;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:923,105,0 chrXIV 139832 . G A 830 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;QD=11.86;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:863,96,0 chrXIV 139835 . C G 712 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=10.47;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:84:745,84,0 chrXIV 139851 . G A 803 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;QD=9.56;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:93:836,93,0 chrXIV 139875 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=10.68;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1005,114,0 chrXIV 139897 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=12.48;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1318,150,0 chrXIV 139930 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.23;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:1980,219,0 chrXIV 139971 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.29;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2224,252,0 chrXIV 140034 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.78;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2153,231,0 chrXIV 140088 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.36;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1540,165,0 chrXIV 140325 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=16.00;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1041,120,0 chrXIV 140538 . A T 733 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:766,84,0 chrXIV 140811 . T C 1075 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1108,126,0 chrXIV 140943 . A G 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=5.960;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.708;QD=22.96;ReadPosRankSum=1.683;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1663,186,0 chrXIV 141468 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.93;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1396,156,0 chrXIV 141564 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1426,162,0 chrXIV 141630 . C A 1240 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1273,141,0 chrXIV 141816 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.58;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1408,159,0 chrXIV 141890 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.34;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1463,165,0 chrXIV 142022 . C T 1053 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1086,117,0 chrXIV 142629 . T G 2607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.279;QD=23.70;ReadPosRankSum=1.667;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,106:110:99:2640,297,0 chrXIV 142664 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.4324;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.52;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2220,237,0 chrXIV 143163 . T A 1265 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.82;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1298,144,0 chrXIV 143955 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1311,150,0 chrXIV 144084 . A G 119.06 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.04;FS=0.000;HaplotypeScore=1.2434;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=2.25;SB=-4.181e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:21:152,21,0 chrXIV 144250 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2170,234,0 chrXIV 144349 . A G 2211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=94;Dels=0.00;FS=12.582;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.120;QD=23.52;ReadPosRankSum=2.396;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:2244,255,0 chrXIV 144427 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=22.73;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1647,180,0 chrXIV 144565 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.10;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2343,255,0 chrXIV 144997 . T C 1121 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.25;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1154,132,0 chrXIV 145006 . C A 1096 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.66;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1129,126,0 chrXIV 145227 . T C 1573 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.18;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1606,183,0 chrXIV 145293 . G T 1464 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.53;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1497,165,0 chrXIV 145578 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.7945;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.499;QD=21.26;ReadPosRankSum=-0.617;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,58:61:99:1330,159,0 chrXIV 146766 . G A 2041 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.48;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2074,228,0 chrXIV 146788 . G C 1435 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.08;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1468,168,0 chrXIV 146794 . T G 1418 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.11;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1451,168,0 chrXIV 146890 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1423,162,0 chrXIV 147716 . C G 1510 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.41;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1543,174,0 chrXIV 147866 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1601,183,0 chrXIV 147978 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.97;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2277,252,0 chrXIV 148331 . T C 2830 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.12;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2863,324,0 chrXIV 148460 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0903;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.88;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1553,174,0 chrXIV 148823 . A G 1670 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.62;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1703,192,0 chrXIV 149054 . T C 1199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.17;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:99:1232,144,0 chrXIV 149537 . T C 1325 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.08;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1358,156,0 chrXIV 149864 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.92;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1414,159,0 chrXIV 149870 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.33;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1314,144,0 chrXIV 150779 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.8366;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.16;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2029,225,0 chrXIV 151775 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.33;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:845,93,0 chrXIV 152100 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.50;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:850,96,0 chrXIV 152633 . A G 1355 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.51;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1388,156,0 chrXIV 153086 . G A 1521 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1554,177,0 chrXIV 153164 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.79;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1557,174,0 chrXIV 153222 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.5337;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.121;QD=20.44;ReadPosRankSum=1.681;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1423,165,0 chrXIV 153854 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1753,198,0 chrXIV 153911 . A G 1389 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.03;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1422,162,0 chrXIV 154017 . G T 1151 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.57;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1184,129,0 chrXIV 154947 . A C 169.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.0376;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.513;QD=2.97;ReadPosRankSum=1.283;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:27:202,27,0 chrXIV 154980 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=14.42;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1201,129,0 chrXIV 155258 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.52;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1519,168,0 chrXIV 155903 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.28;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1678,186,0 chrXIV 156212 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=69;Dels=0.00;FS=7.318;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.626;QD=19.64;ReadPosRankSum=2.379;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1388,159,0 chrXIV 156284 . T C 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.131;QD=22.21;ReadPosRankSum=1.697;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2210,252,0 chrXIV 156755 . C T 948 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.59;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:981,108,0 chrXIV 156760 . T C 902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.604;QD=16.70;ReadPosRankSum=1.604;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:935,108,0 chrXIV 157216 . T C 1565 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.44;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1598,183,0 chrXIV 157516 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.87;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1391,156,0 chrXIV 157526 . C G 1413 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=15.36;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1446,165,0 chrXIV 157659 . A G 1572 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.65;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1605,186,0 chrXIV 157663 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.29;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1624,180,0 chrXIV 157910 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.20;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1689,189,0 chrXIV 157917 . T G 1622 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.02;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1655,192,0 chrXIV 158217 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.76;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1556,171,0 chrXIV 158538 . A G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.435;QD=20.26;ReadPosRankSum=1.683;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1451,168,0 chrXIV 159120 . C G 1326 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.60;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1359,159,0 chrXIV 159157 . G A 1262 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=14.34;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1295,141,0 chrXIV 159166 . A T 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.458;QD=14.44;ReadPosRankSum=1.692;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1289,141,0 chrXIV 159540 . G A 1109 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.63;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1142,126,0 chrXIV 159636 . C T 2279 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.53;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2312,267,0 chrXIV 159674 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.9655;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.14;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1644,186,0 chrXIV 159685 . T G 1372 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=16.53;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1405,162,0 chrXIV 159750 . C G 1852 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.91;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1885,216,0 chrXIV 160012 . C G 1422 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.48;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1455,162,0 chrXIV 160818 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1484,162,0 chrXIV 161277 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1653,195,0 chrXIV 161874 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.56;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1148,129,0 chrXIV 161912 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1436,165,0 chrXIV 162100 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.39;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1063,117,0 chrXIV 162171 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=17.71;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:73:99:1326,147,0 chrXIV 162419 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1175,135,0 chrXIV 162494 . C A 1442 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.44;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1475,159,0 chrXIV 162623 . A G 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=2.756;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.617;QD=19.12;ReadPosRankSum=2.350;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1448,165,0 chrXIV 163817 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.84;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1511,171,0 chrXIV 164237 . A C 1454 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1487,174,0 chrXIV 164315 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.9758;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.93;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1593,177,0 chrXIV 164500 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.60;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1372,150,0 chrXIV 165144 . T G 1255 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.93;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1288,153,0 chrXIV 165259 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=17.77;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1188,129,0 chrXIV 165261 . T A 1058 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.53;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1091,123,0 chrXIV 165408 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.9348;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.60;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1990,231,0 chrXIV 165505 . A G 2321 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2354,267,0 chrXIV 165732 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2031,231,0 chrXIV 165771 . T A 2109 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.30;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2142,234,0 chrXIV 165982 . T A 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.632;QD=20.84;ReadPosRankSum=0.143;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1867,201,0 chrXIV 166576 . A G 807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-1.412;QD=14.94;ReadPosRankSum=1.668;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:96:840,96,0 chrXIV 166583 . C T 785 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.35;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:90:818,90,0 chrXIV 166590 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=14.84;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:84:775,84,0 chrXIV 166603 . T C 799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.064;QD=14.80;ReadPosRankSum=0.128;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:93:832,93,0 chrXIV 166959 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.23;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1100,120,0 chrXIV 167208 . G A 2746 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.52;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2779,306,0 chrXIV 167536 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.6894;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.18;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1431,159,0 chrXIV 167797 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.33;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1863,207,0 chrXIV 167850 . A G 2186 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.01;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2219,249,0 chrXIV 167984 . T G 1410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=72;Dels=0.00;FS=2.472;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.434;QD=19.58;ReadPosRankSum=3.229;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:4,67:72:99:1443,168,0 chrXIV 168178 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.20;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1323,150,0 chrXIV 168578 . A G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;DP=75;Dels=0.00;FS=5.456;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.699;QD=20.60;ReadPosRankSum=2.850;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:3,71:75:99:1578,180,0 chrXIV 168676 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.31;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2003,225,0 chrXIV 168712 . T C 1657 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.8594;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.21;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1690,189,0 chrXIV 168745 . T C 1797 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.936;QD=20.42;ReadPosRankSum=1.692;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1830,204,0 chrXIV 169220 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1929,210,0 chrXIV 169290 . A G 1895 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.95;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1928,216,0 chrXIV 169413 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.27;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1371,153,0 chrXIV 169455 . A C 1067 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.49;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1100,129,0 chrXIV 169509 . T A 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.762;QD=20.51;ReadPosRankSum=1.640;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1571,177,0 chrXIV 169539 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.11;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1975,222,0 chrXIV 169663 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1302,147,0 chrXIV 169711 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.96;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1219,138,0 chrXIV 169773 . A G 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.651;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.597;QD=21.55;ReadPosRankSum=1.664;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1132,126,0 chrXIV 169784 . A C 1001 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.43;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1034,114,0 chrXIV 169984 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2078,237,0 chrXIV 170305 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.28;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1696,189,0 chrXIV 170401 . A G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.865;DP=88;Dels=0.00;FS=22.929;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.919;QD=20.47;ReadPosRankSum=3.965;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:6,82:88:99:1834,210,0 chrXIV 170790 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1938,216,0 chrXIV 171097 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1637,186,0 chrXIV 171927 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1463,165,0 chrXIV 174382 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.80;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1736,198,0 chrXIV 174682 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=17.09;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:65:99:1144,135,0 chrXIV 174821 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.04;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2053,228,0 chrXIV 174916 . A T 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=3.058;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.666;QD=20.95;ReadPosRankSum=1.694;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1960,213,0 chrXIV 174935 . C T 1732 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.38;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1765,201,0 chrXIV 175088 . T A 1378 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.02;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1411,159,0 chrXIV 175091 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.63;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1620,180,0 chrXIV 175243 . C G 1225 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=18.6163;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=15.71;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1258,147,0 chrXIV 175274 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.01;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1708,186,0 chrXIV 176348 . G A 2013 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.88;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2046,231,0 chrXIV 176366 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.80;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1739,192,0 chrXIV 176530 . A T 1116 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1149,126,0 chrXIV 176676 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.11;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1744,195,0 chrXIV 176801 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.76;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1258,144,0 chrXIV 177005 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=21.43;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1383,156,0 chrXIV 177137 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1487,168,0 chrXIV 177269 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.44;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1727,189,0 chrXIV 177299 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.012;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.206;QD=20.39;ReadPosRankSum=2.375;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1379,156,0 chrXIV 177761 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.92;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1288,141,0 chrXIV 177881 . T C 1927 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.79;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1960,228,0 chrXIV 178001 . G A 1423 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.019;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.630;QD=20.93;ReadPosRankSum=1.121;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1456,159,0 chrXIV 178272 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.10;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1721,201,0 chrXIV 178431 . G C 1557 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.33;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1590,183,0 chrXIV 178487 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.08;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1764,195,0 chrXIV 178556 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.26;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1998,222,0 chrXIV 179264 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.46;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1639,189,0 chrXIV 179559 . A T 2255 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.48;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2288,255,0 chrXIV 179985 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.11;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2279,261,0 chrXIV 180002 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.26;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2681,297,0 chrXIV 180219 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.57;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2082,228,0 chrXIV 180736 . C T 2356 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.14;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2389,258,0 chrXIV 180742 . C A 2292 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.93;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2325,252,0 chrXIV 180909 . G T 2310 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2343,264,0 chrXIV 181057 . A T 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=0.226;QD=17.04;ReadPosRankSum=2.276;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1260,141,0 chrXIV 181319 . A C 720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582;DP=46;Dels=0.00;FS=3.840;HaplotypeScore=5.5170;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.657;QD=15.65;ReadPosRankSum=-0.075;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:84:753,84,0 chrXIV 181514 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.54;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1303,138,0 chrXIV 181532 . T C 1591 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.40;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1624,183,0 chrXIV 181565 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=16.55;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1307,144,0 chrXIV 182084 . C A 1680 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1713,189,0 chrXIV 182327 . G C 1347 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.27;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1380,162,0 chrXIV 182372 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.77;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1234,135,0 chrXIV 182462 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.58;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1149,129,0 chrXIV 182621 . T G 1057 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.49;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1090,123,0 chrXIV 182678 . T C 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.849;QD=18.45;ReadPosRankSum=0.946;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:974,111,0 chrXIV 183060 . T C 2329 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.06;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2362,264,0 chrXIV 183798 . A G 2207 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.1435;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.36;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2240,255,0 chrXIV 183942 . A G 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=8.278;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.913;QD=22.21;ReadPosRankSum=2.386;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:2,75:78:99:1765,201,0 chrXIV 184035 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2461;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.22;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1582,183,0 chrXIV 184440 . C T 1052 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.8837;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.13;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1085,120,0 chrXIV 184449 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7299;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.73;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1007,111,0 chrXIV 184629 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.65;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1507,174,0 chrXIV 184882 . T C 2483 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.37;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2516,288,0 chrXIV 184944 . A G 2225 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2258,255,0 chrXIV 184992 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.00;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2289,249,0 chrXIV 185309 . A G 1778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=4.559;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.169;QD=22.22;ReadPosRankSum=1.602;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1811,210,0 chrXIV 185417 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.87;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2014,225,0 chrXIV 185626 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1592,177,0 chrXIV 185798 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.361;DP=94;Dels=0.00;FS=5.268;HaplotypeScore=7.7557;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.975;QD=18.49;ReadPosRankSum=3.304;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:4,89:94:99:1771,204,0 chrXIV 185846 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.77;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1572,180,0 chrXIV 185896 . A G 1905 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.15;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1938,216,0 chrXIV 185936 . A C 1824 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.80;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1857,213,0 chrXIV 186142 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.52;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1755,198,0 chrXIV 186727 . C A 902 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.04;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:935,102,0 chrXIV 186992 . G C 1095 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.88;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1128,129,0 chrXIV 187730 . T A 479 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:57:512,57,0 chrXIV 187782 . A G 336 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.27;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:42:369,42,0 chrXIV 187825 . A G 271 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.387;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.387;QD=12.90;ReadPosRankSum=1.214;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:1,19:21:36:304,36,0 chrXIV 187884 . A C 1027 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.88;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1060,120,0 chrXIV 187965 . A T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.694;QD=0.95;ReadPosRankSum=1.214;SB=-4.980e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:6:52,6,0 chrXIV 187984 . G A 704 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:87:737,87,0 chrXIV 188341 . T G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.745;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.269;QD=19.49;ReadPosRankSum=1.694;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1807,210,0 chrXIV 188387 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.04;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1804,198,0 chrXIV 188707 . T G 1701 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.68;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1734,201,0 chrXIV 189004 . G A 1488 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.60;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1521,168,0 chrXIV 189221 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1826,201,0 chrXIV 189381 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.54;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1948,213,0 chrXIV 189445 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.82;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1463,168,0 chrXIV 189694 . T C 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.7062;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.29;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1928,219,0 chrXIV 189748 . T C 1908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=97;Dels=0.00;FS=3.397;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=19.67;ReadPosRankSum=1.695;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,93:97:99:1941,219,0 chrXIV 189892 . T C 1241 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.68;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1274,144,0 chrXIV 189922 . C G 886 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=16.72;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:919,105,0 chrXIV 189937 . G A 1052 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.83;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1085,123,0 chrXIV 189981 . A G 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=64;Dels=0.00;FS=2.967;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.538;QD=16.47;ReadPosRankSum=2.371;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1087,126,0 chrXIV 190219 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.36;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1659,186,0 chrXIV 190324 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.02;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1949,219,0 chrXIV 190426 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.2839;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.38;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2068,225,0 chrXIV 190429 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.71;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1928,210,0 chrXIV 190540 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=20.3821;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.23;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2066,237,0 chrXIV 190588 . T C 2256 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.89;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2289,270,0 chrXIV 190801 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.91;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1196,132,0 chrXIV 190964 . A T 1573 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.48;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1606,177,0 chrXIV 191137 . A G 944 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:977,108,0 chrXIV 191184 . C A 1200 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1233,135,0 chrXIV 191241 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1179,132,0 chrXIV 191365 . T G 1300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=1.505;QD=21.31;ReadPosRankSum=1.675;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1333,153,0 chrXIV 191917 . T C 2230 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1918;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.04;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2263,261,0 chrXIV 194047 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.22;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1233,138,0 chrXIV 194212 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.11;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1122,126,0 chrXIV 194225 . T C 1072 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.81;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1105,123,0 chrXIV 194499 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.82;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1757,201,0 chrXIV 194758 . A G 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=79;Dels=0.00;FS=16.564;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.461;QD=22.19;ReadPosRankSum=3.047;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:4,74:79:99:1786,201,0 chrXIV 195206 . T C 1317 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.776;DP=69;Dels=0.00;FS=9.218;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.769;QD=19.09;ReadPosRankSum=3.323;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:4,64:69:99:1350,153,0 chrXIV 195358 . A C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.030;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.604;QD=23.47;ReadPosRankSum=1.652;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:2098,234,0 chrXIV 195766 . A G 1679 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.75;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1712,192,0 chrXIV 196105 . A T 864 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=18.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:897,99,0 chrXIV 196115 . A G 760 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=4.3107;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=16.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:90:793,90,0 chrXIV 196819 . T C 2650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.155;QD=22.08;ReadPosRankSum=1.674;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2683,303,0 chrXIV 197191 . T C 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=8.403;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.931;QD=20.29;ReadPosRankSum=2.393;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1798,204,0 chrXIV 197440 . C T 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=73;Dels=0.00;FS=4.771;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.626;QD=22.85;ReadPosRankSum=0.144;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1701,170,0 chrXIV 197710 . G A 1470 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.14;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1503,165,0 chrXIV 197788 . C A 1294 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.25;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1327,144,0 chrXIV 198249 . T C 452.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=9.5581;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;MQRankSum=1.491;QD=11.02;ReadPosRankSum=1.323;SB=-7.851e+01 GT:AD:DP:GQ:PL 1/1:5,34:39:26:485,26,0 chrXIV 198384 . T G 734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=58;Dels=0.00;FS=3.245;HaplotypeScore=4.1276;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.550;QD=12.66;ReadPosRankSum=-0.517;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:87:767,87,0 chrXIV 198392 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=14.20;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:96:871,96,0 chrXIV 198709 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.69;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1006,114,0 chrXIV 199012 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.29;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1717,195,0 chrXIV 199403 . A G 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.178;QD=17.05;ReadPosRankSum=1.547;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1312,150,0 chrXIV 199485 . T C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.787;QD=16.45;ReadPosRankSum=1.687;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1300,153,0 chrXIV 199537 . C G 1813 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.08;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1846,213,0 chrXIV 199570 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.27;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2182,249,0 chrXIV 199738 . C A 1485 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.92;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1518,168,0 chrXIV 199813 . G C 1714 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.26;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1747,198,0 chrXIV 199873 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.22;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1858,210,0 chrXIV 200003 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1469,162,0 chrXIV 200248 . A C 2108 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.27;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2141,252,0 chrXIV 201039 . T C 1917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=110;Dels=0.00;FS=3.050;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.547;QD=17.43;ReadPosRankSum=2.314;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,107:110:99:1950,222,0 chrXIV 201078 . T G 2179 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2212,258,0 chrXIV 201183 . T C 2066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.129;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.233;QD=18.61;ReadPosRankSum=1.701;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2099,243,0 chrXIV 201465 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.33;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1738,189,0 chrXIV 201965 . T C 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=8.495;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-1.487;QD=16.41;ReadPosRankSum=1.697;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1674,192,0 chrXIV 201973 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=14.89;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1582,180,0 chrXIV 202195 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.97;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1783,201,0 chrXIV 202394 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.79;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1616,177,0 chrXIV 202414 . T A 1754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.199;QD=18.86;ReadPosRankSum=1.694;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1787,198,0 chrXIV 202510 . T C 2255 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.32;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2288,264,0 chrXIV 202654 . A G 1856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=91;Dels=0.00;FS=3.108;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.962;QD=20.40;ReadPosRankSum=1.039;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1889,213,0 chrXIV 202666 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.72;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2146,234,0 chrXIV 202811 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.05;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2199,243,0 chrXIV 202874 . T C 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.073;QD=21.57;ReadPosRankSum=1.703;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2600,294,0 chrXIV 203039 . T A 2431 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.37;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2464,270,0 chrXIV 203210 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.87;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2146,255,0 chrXIV 203324 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.25;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,78:81:99:1754,195,0 chrXIV 203534 . T C 2526 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.6677;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.70;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2559,291,0 chrXIV 203687 . G C 1830 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.05;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1863,207,0 chrXIV 203784 . A G 2181 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.6589;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.58;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2214,252,0 chrXIV 204270 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.85;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1581,174,0 chrXIV 204325 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=-1.651;QD=19.04;ReadPosRankSum=1.691;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1651,189,0 chrXIV 204368 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.77;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2109,231,0 chrXIV 204375 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.55;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1851,216,0 chrXIV 204395 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=17.45;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1673,180,0 chrXIV 204437 . T A 658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-0.751;QD=10.97;ReadPosRankSum=1.675;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:81:691,81,0 chrXIV 204438 . T A 666 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=11.10;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:78:699,78,0 chrXIV 204449 . G A 689 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=11.88;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:81:722,81,0 chrXIV 204668 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.50;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2354,264,0 chrXIV 204752 . C T 1255 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.57;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1288,144,0 chrXIV 204770 . C T 941 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.60;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:974,105,0 chrXIV 204836 . A G 1373 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.07;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1406,159,0 chrXIV 204860 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.53;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1556,168,0 chrXIV 204896 . A G 2371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.679;QD=18.10;ReadPosRankSum=1.705;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,129:131:99:2404,273,0 chrXIV 205138 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.61;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1485,165,0 chrXIV 205199 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.560;QD=19.01;ReadPosRankSum=2.322;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1497,171,0 chrXIV 205208 . T A 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=2.901;HaplotypeScore=4.4962;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.983;QD=19.21;ReadPosRankSum=2.339;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1762,192,0 chrXIV 205874 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.91;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1376,150,0 chrXIV 206552 . T A 1394 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.91;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1427,159,0 chrXIV 206709 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.97;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,141,0 chrXIV 206756 . G C 984 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.94;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1017,114,0 chrXIV 206786 . G A 962 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.04;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:995,108,0 chrXIV 206892 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.04;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1283,144,0 chrXIV 207129 . T C 967 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.34;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1000,114,0 chrXIV 207358 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.40;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1527,174,0 chrXIV 207991 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1036,114,0 chrXIV 208195 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.24;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1255,141,0 chrXIV 208275 . C G 1217 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1250,141,0 chrXIV 209853 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.79;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1480,168,0 chrXIV 209884 . G A 1317 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.55;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1350,147,0 chrXIV 209994 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.33;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1151,132,0 chrXIV 210438 . A T 1453 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.37;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1486,165,0 chrXIV 210474 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.65;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1974,213,0 chrXIV 210544 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.83;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1596,183,0 chrXIV 210617 . A G 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=3.882;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.577;QD=20.85;ReadPosRankSum=1.680;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1430,162,0 chrXIV 210763 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.84;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1313,150,0 chrXIV 210775 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.12;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1505,165,0 chrXIV 210877 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.26;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1431,159,0 chrXIV 211162 . T C 992 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.72;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1025,117,0 chrXIV 211753 . G T 1019 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.68;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1052,117,0 chrXIV 211791 . T C 830 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.28;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:863,99,0 chrXIV 211886 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1144,132,0 chrXIV 211934 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.724;QD=19.00;ReadPosRankSum=1.669;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1078,126,0 chrXIV 212140 . A C 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.10;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,156,0 chrXIV 212482 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.96;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1530,177,0 chrXIV 212538 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.6506;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.70;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1333,147,0 chrXIV 212631 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.51;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1038,120,0 chrXIV 213031 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.18;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1042,120,0 chrXIV 213061 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.9428;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.53;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:904,99,0 chrXIV 213493 . A G 1372 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.440;QD=20.48;ReadPosRankSum=1.681;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1405,165,0 chrXIV 213556 . T A 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.236;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=1.448;QD=18.92;ReadPosRankSum=1.675;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1187,129,0 chrXIV 213580 . G A 899 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.63;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:932,105,0 chrXIV 213646 . A G 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=-0.728;QD=20.40;ReadPosRankSum=1.682;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1461,165,0 chrXIV 213670 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.32;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1760,195,0 chrXIV 213772 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.77;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1445,159,0 chrXIV 213856 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.72;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1220,138,0 chrXIV 213861 . T A 1090 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.03;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1123,129,0 chrXIV 214011 . A G 937 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.513;QD=17.35;ReadPosRankSum=1.604;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:970,108,0 chrXIV 214019 . C A 836 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=16.39;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:869,99,0 chrXIV 214026 . G A 809 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=14.45;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:842,93,0 chrXIV 214071 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=15.00;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1083,120,0 chrXIV 214696 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.43;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1199,138,0 chrXIV 214732 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.62;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1568,171,0 chrXIV 214843 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.1338;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.68;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1399,159,0 chrXIV 214909 . A G 957 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.40;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:990,114,0 chrXIV 214918 . T C 1136 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.62;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1169,132,0 chrXIV 215105 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.732;QD=20.39;ReadPosRankSum=1.691;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1766,204,0 chrXIV 215180 . G A 1829 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.52;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1862,204,0 chrXIV 215285 . C T 2205 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.80;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2238,252,0 chrXIV 215804 . T C 1103 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.38;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1136,135,0 chrXIV 215887 . T A 986 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.43;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1019,114,0 chrXIV 216026 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=27.02;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1627,171,0 chrXIV 217083 . A T 295 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.35;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:36:328,36,0 chrXIV 217872 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.69;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1289,147,0 chrXIV 218071 . A G 1904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=99;Dels=0.00;FS=6.121;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.439;QD=19.23;ReadPosRankSum=2.868;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:1937,216,0 chrXIV 218831 . G T 1151 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.19;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1184,129,0 chrXIV 218903 . A G 627 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7250;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=12.80;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:75:660,75,0 chrXIV 219260 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.71;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1900,204,0 chrXIV 219422 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8279;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.75;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1306,141,0 chrXIV 220228 . A T 279 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.95;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:36:312,36,0 chrXIV 220272 . G A 735 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.27;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:768,84,0 chrXIV 220548 . T G 692 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=16.88;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:725,81,0 chrXIV 220550 . T G 699 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.05;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:732,81,0 chrXIV 220551 . T A 722 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.578;QD=17.19;ReadPosRankSum=1.650;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:81:755,81,0 chrXIV 220632 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.42;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1451,165,0 chrXIV 220663 . A T 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=5.969;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.772;QD=21.76;ReadPosRankSum=1.523;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1839,204,0 chrXIV 220693 . A G 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=6.880;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.622;QD=21.27;ReadPosRankSum=1.688;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1692,198,0 chrXIV 220950 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.52;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1305,147,0 chrXIV 221010 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.91;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1386,153,0 chrXIV 221603 . G T 1144 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.39;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1177,129,0 chrXIV 221673 . T A 903 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.71;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:936,108,0 chrXIV 222506 . A G 670 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.58;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:81:703,81,0 chrXIV 222696 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.17;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1629,183,0 chrXIV 223150 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1197,132,0 chrXIV 223243 . T A 1300 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.12;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1333,150,0 chrXIV 223491 . C A 1230 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.36;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1263,135,0 chrXIV 223531 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=4.135;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.274;QD=19.14;ReadPosRankSum=1.672;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1124,126,0 chrXIV 223567 . A G 1205 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.14;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1238,141,0 chrXIV 223662 . G A 1143 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.483;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.448;QD=18.44;ReadPosRankSum=1.562;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1176,108,0 chrXIV 223792 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.56;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:753,84,0 chrXIV 223849 . T C 519 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=15.26;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:63:552,63,0 chrXIV 223888 . T C 709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=4.228;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.115;QD=15.76;ReadPosRankSum=1.501;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:81:742,81,0 chrXIV 223912 . A G 732 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=14.08;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:90:765,90,0 chrXIV 223969 . C A 891 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=17.47;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:924,108,0 chrXIV 223986 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.55;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:952,105,0 chrXIV 224038 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:830,93,0 chrXIV 224263 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.02;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:916,102,0 chrXIV 224275 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.96;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:949,105,0 chrXIV 224570 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.87;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:972,111,0 chrXIV 224628 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.74;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1008,114,0 chrXIV 224654 . G A 738 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=14.19;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:87:771,87,0 chrXIV 224659 . G T 855 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=16.44;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:888,99,0 chrXIV 224940 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.91;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:929,102,0 chrXIV 224991 . A G 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=1.024;QD=21.18;ReadPosRankSum=1.654;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:965,108,0 chrXIV 225318 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.19;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1875,204,0 chrXIV 225567 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=16.57;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1309,150,0 chrXIV 225699 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.04;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1379,159,0 chrXIV 226012 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.82;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2315,258,0 chrXIV 226114 . C T 2075 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.96;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:2108,234,0 chrXIV 226164 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.075;QD=19.26;ReadPosRankSum=1.694;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1805,207,0 chrXIV 226418 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.11;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2052,237,0 chrXIV 226500 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.1258;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.73;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:2037,234,0 chrXIV 226580 . T C 2197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=3.996;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.039;QD=16.52;ReadPosRankSum=1.706;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2230,255,0 chrXIV 226629 . T A 2414 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2447,270,0 chrXIV 226950 . A T 1945 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1978,216,0 chrXIV 227377 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2034,222,0 chrXIV 227455 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.77;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1650,183,0 chrXIV 227572 . A G 827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=10.1385;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.617;QD=13.78;ReadPosRankSum=1.615;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:96:860,96,0 chrXIV 227933 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.668;QD=20.89;ReadPosRankSum=1.668;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1161,135,0 chrXIV 229890 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=53.1514;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.18;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1264,144,0 chrXIV 230095 . T C 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=45;Dels=0.00;FS=3.647;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.654;QD=20.13;ReadPosRankSum=1.654;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:939,108,0 chrXIV 230464 . A G 841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=44;Dels=0.00;FS=4.873;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.491;QD=19.11;ReadPosRankSum=1.652;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:99:874,99,0 chrXIV 230599 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.73;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1434,159,0 chrXIV 230725 . T C 1887 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=13.3762;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.07;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1920,216,0 chrXIV 230901 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.46;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1179,135,0 chrXIV 230962 . G T 1865 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.94;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1898,207,0 chrXIV 231034 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.06;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3011,324,0 chrXIV 231084 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.46;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2772,306,0 chrXIV 231302 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.73;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1920,207,0 chrXIV 231331 . A G 1969 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.30;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2002,225,0 chrXIV 231426 . A G 1929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.155;QD=16.63;ReadPosRankSum=1.702;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,113:116:99:1962,219,0 chrXIV 231454 . C A 1522 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.12;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1555,174,0 chrXIV 231474 . C T 1746 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.19;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1779,198,0 chrXIV 231538 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.62;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1951,222,0 chrXIV 232094 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.44;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1627,183,0 chrXIV 232190 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.74;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1900,216,0 chrXIV 232241 . G A 2268 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.43;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2301,252,0 chrXIV 232438 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.70;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1716,189,0 chrXIV 232472 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=5.631;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.620;QD=17.13;ReadPosRankSum=2.925;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1626,180,0 chrXIV 232508 . A G 1445 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=16.61;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1478,168,0 chrXIV 232598 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.53;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1540,180,0 chrXIV 232914 . A G 1698 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6244;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.96;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1731,198,0 chrXIV 233054 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.7500;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.42;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2072,237,0 chrXIV 233132 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.09;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2171,246,0 chrXIV 233237 . G C 1830 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.60;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1863,216,0 chrXIV 233293 . A T 2276 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.76;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2309,252,0 chrXIV 233498 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=16.94;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1541,171,0 chrXIV 233507 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.360;QD=15.97;ReadPosRankSum=1.695;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1534,174,0 chrXIV 233560 . T C 1120 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=14.36;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1153,129,0 chrXIV 233585 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=15.26;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:964,111,0 chrXIV 233609 . A G 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.346;QD=13.96;ReadPosRankSum=1.686;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1080,123,0 chrXIV 233897 . A G 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.861;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.065;QD=15.93;ReadPosRankSum=2.364;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:941,108,0 chrXIV 234325 . G A 2260 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2482;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.30;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2293,252,0 chrXIV 234916 . T C 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.060;QD=20.38;ReadPosRankSum=-1.493;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1215,123,0 chrXIV 236629 . A T 1864 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.42;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1897,216,0 chrXIV 236810 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.51;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1711,198,0 chrXIV 237099 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=79;Dels=0.00;FS=7.661;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.044;QD=20.00;ReadPosRankSum=2.263;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1613,186,0 chrXIV 237838 . T G 1502 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.86;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1535,174,0 chrXIV 238429 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.07;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2111,243,0 chrXIV 238793 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.80;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2461,270,0 chrXIV 238963 . T C 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=-1.732;QD=17.03;ReadPosRankSum=1.694;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1583,177,0 chrXIV 238966 . T C 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=95;Dels=0.00;FS=5.312;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.973;QD=16.38;ReadPosRankSum=3.363;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:4,91:95:99:1589,180,0 chrXIV 239581 . G A 2376 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.21;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2409,261,0 chrXIV 240005 . A C 947 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.94;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:980,117,0 chrXIV 240441 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.64;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1617,186,0 chrXIV 240489 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.03;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1756,204,0 chrXIV 240546 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.70;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1903,210,0 chrXIV 240602 . T C 2088 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2121,246,0 chrXIV 241273 . C A 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.36;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1849,204,0 chrXIV 241423 . T G 1360 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.15;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1393,168,0 chrXIV 241440 . G T 1428 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.00;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1461,159,0 chrXIV 242111 . C T 2375 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.31;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2408,267,0 chrXIV 242204 . T C 2161 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.3797;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.86;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2194,249,0 chrXIV 242246 . A G 1855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8787;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.935;QD=18.37;ReadPosRankSum=1.663;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1888,219,0 chrXIV 242444 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.25;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2531,279,0 chrXIV 242475 . A G 2175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.288;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.408;QD=21.32;ReadPosRankSum=1.664;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2208,255,0 chrXIV 242579 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.33;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1811,198,0 chrXIV 242589 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=16.79;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1678,189,0 chrXIV 242759 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.25;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1900,207,0 chrXIV 243194 . G T 1630 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1663,183,0 chrXIV 243226 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1983,219,0 chrXIV 243291 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.04;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2305,252,0 chrXIV 245307 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.72;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2022,231,0 chrXIV 245680 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5796;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.28;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1799,204,0 chrXIV 246051 . C T 2131 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.20;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2164,237,0 chrXIV 246155 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.2534;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.72;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2084,234,0 chrXIV 246306 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.93;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1488,168,0 chrXIV 246333 . T G 1161 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=15.69;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1194,135,0 chrXIV 246342 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=60.3164;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=13.38;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1063,120,0 chrXIV 246378 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.59;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2091,237,0 chrXIV 246481 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2096,228,0 chrXIV 246942 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.05;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1731,189,0 chrXIV 247045 . G A 2087 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.74;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2120,243,0 chrXIV 247168 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.39;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1466,162,0 chrXIV 247246 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.57;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1658,192,0 chrXIV 247374 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8865;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.75;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2284,255,0 chrXIV 247381 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9635;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.87;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2260,252,0 chrXIV 247425 . C A 1763 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=15.74;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1796,204,0 chrXIV 247432 . A G 1594 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.48;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1627,189,0 chrXIV 247691 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.38;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1990,225,0 chrXIV 248282 . A G 1162 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1195,135,0 chrXIV 248423 . G A 2372 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4317;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.20;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2405,267,0 chrXIV 248556 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.08;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1922,219,0 chrXIV 249509 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.00;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1689,183,0 chrXIV 249542 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.24;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1369,153,0 chrXIV 249902 . A G 2226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=104;Dels=0.00;FS=7.938;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.604;QD=21.40;ReadPosRankSum=2.402;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2259,258,0 chrXIV 249918 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.15;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2255,246,0 chrXIV 250008 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.91;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1591,174,0 chrXIV 250019 . C T 1467 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.92;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1500,165,0 chrXIV 250357 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.61;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1632,180,0 chrXIV 250456 . C G 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=68;Dels=0.00;FS=5.250;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.060;QD=19.99;ReadPosRankSum=1.681;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1392,145,0 chrXIV 250504 . G T 1684 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.87;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1717,192,0 chrXIV 250567 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.3969;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.69;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1726,189,0 chrXIV 250619 . G A 2477 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.02;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2510,276,0 chrXIV 250834 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=15.47;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1085,123,0 chrXIV 250840 . T C 1060 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.31;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1093,123,0 chrXIV 250896 . C T 645 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=13.16;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:678,75,0 chrXIV 252203 . C G 2111 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.76;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2144,243,0 chrXIV 253087 . T C 470 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=5;MQRankSum=-0.060;QD=18.08;ReadPosRankSum=2.097;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,24:26:57:503,57,0 chrXIV 253153 . T A 538 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=28;MQRankSum=-0.096;QD=8.41;ReadPosRankSum=1.636;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:17,47:64:63:571,63,0 chrXIV 253156 . T C 517 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=28;QD=8.08;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:16,48:64:63:550,63,0 chrXIV 253645 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.54;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1683,189,0 chrXIV 254579 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9614;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.30;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1804,198,0 chrXIV 254632 . T C 2190 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.26;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2223,255,0 chrXIV 254678 . T C 2585 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.318;QD=21.54;ReadPosRankSum=1.703;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2618,306,0 chrXIV 254966 . G A 1329 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.41;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1362,150,0 chrXIV 255178 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=16.94;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1388,159,0 chrXIV 255189 . A T 1327 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=16.80;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1360,156,0 chrXIV 255192 . C T 1430 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=18.33;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1463,159,0 chrXIV 255215 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=17.67;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1464,156,0 chrXIV 256252 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.43;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1876,207,0 chrXIV 256273 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.37;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1622,177,0 chrXIV 256778 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=15.97;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:1710,189,0 chrXIV 256787 . G C 1722 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.22;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1755,201,0 chrXIV 256857 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7668;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.85;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2012,228,0 chrXIV 256929 . A G 1490 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.92;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1523,180,0 chrXIV 257067 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.07;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1967,219,0 chrXIV 257114 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.9183;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.93;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1963,222,0 chrXIV 257376 . G C 2061 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.92;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2094,243,0 chrXIV 257463 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=17.00;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1189,138,0 chrXIV 257472 . A G 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=67;Dels=0.00;FS=3.068;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.203;QD=16.72;ReadPosRankSum=2.303;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1153,132,0 chrXIV 257643 . A C 1070 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.58;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1103,126,0 chrXIV 257986 . A T 1236 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.24;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1269,138,0 chrXIV 258010 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.56;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1003,111,0 chrXIV 258013 . C T 933 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.20;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:966,105,0 chrXIV 258099 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.19;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1083,120,0 chrXIV 258241 . A T 1032 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.76;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1065,117,0 chrXIV 258320 . A T 530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.945;DP=57;Dels=0.00;FS=10.423;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.776;QD=9.30;ReadPosRankSum=5.922;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:17,40:57:66:563,66,0 chrXIV 258399 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.88;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1149,132,0 chrXIV 258474 . G A 778 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.47;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:811,90,0 chrXIV 258589 . T A 520 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.93;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:60:553,60,0 chrXIV 258590 . G C 496 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.53;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:60:529,60,0 chrXIV 258678 . C G 1061 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.61;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1094,126,0 chrXIV 258735 . A G 1067 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.08;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1100,129,0 chrXIV 258795 . A G 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.570;QD=18.34;ReadPosRankSum=1.678;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1207,138,0 chrXIV 258883 . C T 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126;DP=80;Dels=0.00;FS=3.349;HaplotypeScore=11.3994;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.559;QD=18.56;ReadPosRankSum=0.736;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1518,168,0 chrXIV 258894 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.584;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=6.3789;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.683;QD=16.80;ReadPosRankSum=1.683;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1209,141,0 chrXIV 259059 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.403;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.048;QD=22.12;ReadPosRankSum=1.689;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1847,216,0 chrXIV 259283 . A G 1027 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.3480;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.41;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1060,126,0 chrXIV 259493 . A T 1668 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.74;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1701,192,0 chrXIV 259503 . T G 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=3.628;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-0.730;QD=17.32;ReadPosRankSum=1.649;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1505,174,0 chrXIV 259517 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=15.81;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1250,138,0 chrXIV 259524 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=14.90;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1195,132,0 chrXIV 259563 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.93;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1593,174,0 chrXIV 259694 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.92;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1206,141,0 chrXIV 259989 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.22;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1529,168,0 chrXIV 260057 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.14;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1760,192,0 chrXIV 260099 . A C 1508 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.86;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1541,174,0 chrXIV 260108 . C T 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.027;QD=21.52;ReadPosRankSum=-0.080;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:1475,162,0 chrXIV 260586 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.91;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1435,159,0 chrXIV 260605 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.52;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:996,111,0 chrXIV 260618 . A G 825 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=16.84;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:858,96,0 chrXIV 260980 . T C 878 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=17.22;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:911,102,0 chrXIV 261047 . T C 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.098;QD=19.36;ReadPosRankSum=1.602;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1059,120,0 chrXIV 262265 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.23;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1764,198,0 chrXIV 262301 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.82;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1595,174,0 chrXIV 262310 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.56;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1561,168,0 chrXIV 262513 . T G 1294 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1327,153,0 chrXIV 262766 . G A 1253 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.78;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1286,141,0 chrXIV 262913 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.82;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1678,189,0 chrXIV 263036 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.163;QD=19.01;ReadPosRankSum=1.681;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1326,153,0 chrXIV 263315 . T A 780 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.14;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:813,90,0 chrXIV 263433 . T C 675 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=16.46;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:708,81,0 chrXIV 263968 . T C 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=74;Dels=0.00;FS=8.421;HaplotypeScore=5.6935;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.456;QD=17.64;ReadPosRankSum=2.349;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1338,150,0 chrXIV 264232 . A G 1291 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.17;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1324,150,0 chrXIV 264468 . G T 1756 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.95;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1789,201,0 chrXIV 264537 . A G 2515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.708;QD=21.68;ReadPosRankSum=-1.551;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2548,264,0 chrXIV 265328 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.35;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2308,252,0 chrXIV 266015 . C A 1509 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.96;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1542,174,0 chrXIV 266760 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.10;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1128,126,0 chrXIV 267267 . C T 823 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:856,99,0 chrXIV 268398 . T G 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.140;QD=19.05;ReadPosRankSum=1.701;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2147,243,0 chrXIV 269266 . C G 2659 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.73;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2692,297,0 chrXIV 269553 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4906;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.92;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2423,264,0 chrXIV 270079 . C A 695 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=16.95;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:728,78,0 chrXIV 270094 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=14.93;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:645,72,0 chrXIV 270107 . T G 619 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=14.40;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:652,72,0 chrXIV 270129 . A T 428 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=10.19;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:51:461,51,0 chrXIV 270133 . C T 351 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=8.77;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:45:384,45,0 chrXIV 270160 . T C 456 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=9.31;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:57:489,57,0 chrXIV 270214 . T C 881 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=13.35;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:914,105,0 chrXIV 270237 . T A 637 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=13.55;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:670,81,0 chrXIV 270238 . A T 611 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=13.00;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:644,78,0 chrXIV 270239 . C T 667 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=13.61;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:81:700,81,0 chrXIV 270241 . A T 706 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=13.58;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:739,81,0 chrXIV 270523 . T G 1500 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.13;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1533,171,0 chrXIV 270970 . T C 936 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0389;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=15.34;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:969,111,0 chrXIV 270998 . A C 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=4.412;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.299;QD=14.22;ReadPosRankSum=1.673;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:872,99,0 chrXIV 271001 . T C 857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.207;DP=65;Dels=0.00;FS=5.402;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=-1.406;QD=13.18;ReadPosRankSum=3.317;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:4,61:65:99:890,102,0 chrXIV 271098 . T G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.697;QD=18.52;ReadPosRankSum=1.573;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1644,195,0 chrXIV 271256 . G C 1511 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6512;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.90;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1544,177,0 chrXIV 271443 . T A 2951 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.70;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2984,333,0 chrXIV 271656 . T A 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.310;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.097;QD=19.02;ReadPosRankSum=1.675;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1193,129,0 chrXIV 271921 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.6897;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.56;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1578,171,0 chrXIV 272042 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0889;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.69;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2102,243,0 chrXIV 272165 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6428;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.88;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1946,216,0 chrXIV 272328 . A G 2993 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.85;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3026,336,0 chrXIV 272416 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.285;QD=19.72;ReadPosRankSum=1.704;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2478,282,0 chrXIV 272546 . T A 4248.01 PASS AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=13.9275;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.24;SB=-1.782e+03 GT:AD:DP:GQ:PL 1/1:0,200:200:99:4248,465,0 chrXIV 272669 . C T 2164 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.27;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2197,237,0 chrXIV 272688 . A G 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=84;Dels=0.02;FS=9.020;HaplotypeScore=5.4904;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.107;QD=21.86;ReadPosRankSum=2.237;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1869,210,0 chrXIV 272818 . A G 1548 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=89;Dels=0.00;FS=6.380;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.184;QD=17.39;ReadPosRankSum=2.337;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,85:89:99:1581,180,0 chrXIV 272830 . A G 1661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=89;Dels=0.00;FS=11.499;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.759;QD=18.66;ReadPosRankSum=2.897;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,85:89:99:1694,189,0 chrXIV 273018 . A G 1329 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.72;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1362,153,0 chrXIV 273490 . A G 808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.732;QD=17.57;ReadPosRankSum=1.657;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:93:841,93,0 chrXIV 274721 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.00;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1113,126,0 chrXIV 274731 . C T 1049 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.73;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1082,120,0 chrXIV 274808 . T C 1487 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.053;QD=21.24;ReadPosRankSum=2.380;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1520,174,0 chrXIV 274838 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.83;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1690,189,0 chrXIV 274853 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.07;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1641,180,0 chrXIV 274886 . C A 1331 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=15.66;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1364,150,0 chrXIV 275189 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8688;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.43;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1743,195,0 chrXIV 275212 . T A 1877 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.55;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1910,210,0 chrXIV 275298 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.60;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1908,210,0 chrXIV 275437 . T C 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=4.533;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-0.854;QD=18.49;ReadPosRankSum=1.683;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1364,150,0 chrXIV 275457 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.81;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1244,141,0 chrXIV 275934 . T C 2795 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.01;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2828,321,0 chrXIV 276118 . A C 1270 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.48;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1303,150,0 chrXIV 276149 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.86;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1176,138,0 chrXIV 276550 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.98;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1242,141,0 chrXIV 276799 . C T 2663 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.19;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2696,303,0 chrXIV 276831 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.61;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2182,246,0 chrXIV 276852 . G C 1673 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3046;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=14.18;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1706,195,0 chrXIV 276870 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2145;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.11;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1475,165,0 chrXIV 277361 . G A 2115 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.50;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2148,234,0 chrXIV 277707 . A T 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=1.386;QD=20.14;ReadPosRankSum=1.689;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1664,189,0 chrXIV 277752 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.47;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1589,180,0 chrXIV 277797 . T C 1662 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.02;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1695,192,0 chrXIV 277803 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.61;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1723,189,0 chrXIV 277923 . A G 1572 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=11.6530;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.267;QD=19.17;ReadPosRankSum=1.648;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1605,183,0 chrXIV 278286 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.81;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1237,138,0 chrXIV 278430 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.59;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1167,132,0 chrXIV 278571 . A G 785 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.39;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:818,96,0 chrXIV 278850 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.81;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:928,108,0 chrXIV 279061 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.63;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1309,150,0 chrXIV 279072 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.77;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1298,144,0 chrXIV 279171 . C A 1106 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.75;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1139,129,0 chrXIV 279177 . A G 1018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=9.700;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.019;QD=17.86;ReadPosRankSum=2.364;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1051,117,0 chrXIV 279204 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.07;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1330,147,0 chrXIV 279267 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.40;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1849,207,0 chrXIV 279444 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.8804;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.67;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1808,198,0 chrXIV 279537 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.06;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1618,183,0 chrXIV 279996 . G A 678 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=13.04;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:78:711,78,0 chrXIV 280016 . C A 613 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.57;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:72:646,72,0 chrXIV 280112 . C T 588 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.97;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:621,69,0 chrXIV 280119 . C T 562 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.73;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:595,66,0 chrXIV 280158 . T C 562 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.73;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:66:595,66,0 chrXIV 280722 . C T 2264 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.52;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2297,255,0 chrXIV 280848 . A G 3784.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.80;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3784,420,0 chrXIV 280977 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.47;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1773,201,0 chrXIV 281038 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.12;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1557,171,0 chrXIV 281049 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=15.78;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1327,150,0 chrXIV 281100 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.2752;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=16.91;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1825,207,0 chrXIV 281196 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.95;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2627,285,0 chrXIV 281259 . G A 2538 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0678;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.30;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2571,282,0 chrXIV 281601 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.98;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1963,225,0 chrXIV 281634 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.88;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1921,210,0 chrXIV 281655 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.65;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1681,189,0 chrXIV 282032 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.90;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1517,165,0 chrXIV 282640 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9432;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.67;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1449,159,0 chrXIV 282778 . T C 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.880;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.9594;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=1.675;QD=13.39;ReadPosRankSum=0.028;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:96:863,96,0 chrXIV 282787 . C T 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=1.675;QD=13.70;ReadPosRankSum=-0.710;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:96:869,96,0 chrXIV 282805 . C T 854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.596;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=1.675;QD=14.00;ReadPosRankSum=-1.448;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:887,99,0 chrXIV 282820 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=12.60;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:915,102,0 chrXIV 282824 . A G 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;MQRankSum=1.683;QD=11.31;ReadPosRankSum=-0.247;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:96:825,96,0 chrXIV 282868 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.47;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1176,132,0 chrXIV 282964 . T C 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.895;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.415;QD=19.96;ReadPosRankSum=1.683;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1470,171,0 chrXIV 283562 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.53;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1146,132,0 chrXIV 283571 . T C 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-1.602;QD=19.09;ReadPosRankSum=1.667;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,52:55:99:1083,123,0 chrXIV 283828 . T C 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-1.358;QD=20.74;ReadPosRankSum=1.685;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1568,180,0 chrXIV 283835 . A G 1413 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.90;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1446,165,0 chrXIV 284646 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.49;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2006,222,0 chrXIV 284715 . T A 2087 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.68;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2120,234,0 chrXIV 284733 . T C 1848 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.31;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1881,219,0 chrXIV 284847 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.8407;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.23;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1965,216,0 chrXIV 285069 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.1102;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.97;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1627,186,0 chrXIV 285483 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.76;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1237,141,0 chrXIV 285543 . G C 1509 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.19;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1542,174,0 chrXIV 285930 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.516;QD=20.87;ReadPosRankSum=1.689;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1703,195,0 chrXIV 286055 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.26;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1480,159,0 chrXIV 286433 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.89;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1478,168,0 chrXIV 286831 . A T 1562 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.11;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1595,180,0 chrXIV 286862 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.65;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1469,168,0 chrXIV 287016 . C G 1598 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.97;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1631,186,0 chrXIV 287246 . G A 2409 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=18.82;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2442,276,0 chrXIV 287304 . T C 3384.01 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.66;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3384,387,0 chrXIV 287408 . C A 1442 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.18;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1475,162,0 chrXIV 287435 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.48;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1202,138,0 chrXIV 287444 . C A 1286 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.19;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1319,147,0 chrXIV 287504 . C T 2228 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=15.80;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2261,264,0 chrXIV 287606 . T C 4706.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=204;Dels=0.00;FS=4.288;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.798;QD=23.07;ReadPosRankSum=-1.664;SB=-1.886e+03 GT:AD:DP:GQ:PL 1/1:1,203:204:99:4706,525,0 chrXIV 287672 . T G 2551 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.874;QD=23.19;ReadPosRankSum=1.700;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2584,291,0 chrXIV 288102 . A G 3117 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.59;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:3150,351,0 chrXIV 288146 . A T 2675 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.40;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2708,300,0 chrXIV 288198 . A T 2989 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.91;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:3022,330,0 chrXIV 288447 . A G 3098 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7308;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.672;QD=21.07;ReadPosRankSum=1.685;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3131,357,0 chrXIV 289129 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.65;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:932,105,0 chrXIV 289819 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.2280;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.40;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2002,231,0 chrXIV 289920 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.33;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1781,201,0 chrXIV 289984 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.95;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1416,156,0 chrXIV 289995 . A C 1250 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.66;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1283,147,0 chrXIV 290022 . C T 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.266;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=1.666;QD=16.36;ReadPosRankSum=1.399;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,51:53:99:900,102,0 chrXIV 290043 . C T 303.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;DP=72;Dels=0.00;FS=8.385;HaplotypeScore=4.6519;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=1;MQRankSum=-0.949;QD=4.21;ReadPosRankSum=0.483;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/1:42,30:72:99:333,0,276 chrXIV 290461 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.87;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1230,135,0 chrXIV 291122 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1304,144,0 chrXIV 291360 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.4002;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.37;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1666,186,0 chrXIV 291552 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.52;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1059,117,0 chrXIV 291654 . T A 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.687;QD=17.63;ReadPosRankSum=0.697;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1408,165,0 chrXIV 292005 . A C 1006 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.98;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1039,117,0 chrXIV 292036 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.75;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1164,132,0 chrXIV 292265 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.914;QD=22.64;ReadPosRankSum=1.684;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1663,192,0 chrXIV 292355 . G C 1813 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1846,210,0 chrXIV 292505 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.47;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1901,207,0 chrXIV 292695 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.65;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1879,201,0 chrXIV 292862 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.98;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1250,141,0 chrXIV 292881 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.38;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1157,132,0 chrXIV 292884 . T G 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=3.906;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.088;QD=17.03;ReadPosRankSum=1.674;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1038,117,0 chrXIV 293042 . G A 2797 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.74;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2830,309,0 chrXIV 293332 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.21;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1852,210,0 chrXIV 293347 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.44;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1919,216,0 chrXIV 294334 . G A 2836 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.06;SB=-1.354e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2869,318,0 chrXIV 294681 . A G 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.436;DP=102;Dels=0.00;FS=2.322;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.368;QD=19.75;ReadPosRankSum=3.750;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:5,96:102:99:2047,228,0 chrXIV 294859 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.63;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2137,234,0 chrXIV 294928 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.86;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2077,231,0 chrXIV 294973 . T C 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.536;QD=20.12;ReadPosRankSum=1.650;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1743,198,0 chrXIV 295050 . T C 2206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=2.971;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.977;QD=21.42;ReadPosRankSum=2.377;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:2,100:103:99:2239,252,0 chrXIV 295066 . G A 2343 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.03;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2376,273,0 chrXIV 295803 . A C 1919 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.85;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1952,225,0 chrXIV 296137 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=3.007;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.721;QD=19.47;ReadPosRankSum=2.405;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2194,252,0 chrXIV 296142 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.390;QD=19.04;ReadPosRankSum=1.670;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2185,249,0 chrXIV 296416 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=15.62;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1376,153,0 chrXIV 296479 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.02;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1475,165,0 chrXIV 296824 . A G 1854 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.07;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1887,222,0 chrXIV 297016 . A G 1598 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.292;QD=20.75;ReadPosRankSum=1.687;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1631,186,0 chrXIV 297187 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.35;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2149,246,0 chrXIV 297253 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.49;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1832,207,0 chrXIV 297316 . G C 1776 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=18.89;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1809,207,0 chrXIV 297334 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.53;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1719,198,0 chrXIV 297366 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.5829;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.94;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1755,198,0 chrXIV 297762 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.52;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1123,126,0 chrXIV 298031 . C A 936 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=5.315;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.034;QD=18.35;ReadPosRankSum=1.053;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:969,108,0 chrXIV 298110 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.0367;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.54;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:910,99,0 chrXIV 298403 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.13;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1860,207,0 chrXIV 298431 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0979;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.82;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1449,159,0 chrXIV 298436 . T G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.367;DP=54;Dels=0.00;FS=25.980;HaplotypeScore=3.8865;MLEAC=1;MLEAF=0.500;MQ=55.12;MQ0=0;MQRankSum=-1.377;QD=0.23;ReadPosRankSum=-0.392;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,27:54:42:42,0,170 chrXIV 298878 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.36;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1849,207,0 chrXIV 299288 . T A 1448 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.56;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1481,162,0 chrXIV 299384 . G A 1225 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1258,141,0 chrXIV 299817 . G T 1975 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2008,219,0 chrXIV 300017 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1850,207,0 chrXIV 300185 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.12;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:889,102,0 chrXIV 300215 . T C 945 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.83;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:978,111,0 chrXIV 300432 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.72;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:763,87,0 chrXIV 300452 . T C 582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=37;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.149;QD=15.73;ReadPosRankSum=1.634;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:1,34:37:72:615,72,0 chrXIV 300720 . T C 270 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=12.27;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:303,36,0 chrXIV 300738 . G C 354 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=14.16;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:45:387,45,0 chrXIV 301119 . A T 386 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.73;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:419,45,0 chrXIV 301186 . G T 239 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=11.95;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:30:272,30,0 chrXIV 301290 . T C 807 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.74;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:840,96,0 chrXIV 301506 . A G 679 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.41;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:81:712,81,0 chrXIV 301548 . T A 1033 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.48;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1066,120,0 chrXIV 301618 . A T 1388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.164;QD=22.75;ReadPosRankSum=1.051;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1421,156,0 chrXIV 301653 . C G 1465 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.93;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1498,174,0 chrXIV 301781 . C G 1451 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.15;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1484,168,0 chrXIV 301794 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.58;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1575,177,0 chrXIV 301887 . C G 943 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.13;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:976,114,0 chrXIV 301978 . A T 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=76;Dels=0.00;FS=8.734;HaplotypeScore=11.0335;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.128;QD=11.84;ReadPosRankSum=2.640;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:4,72:76:99:933,105,0 chrXIV 301979 . T C 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=76;Dels=0.00;FS=8.615;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.120;QD=11.54;ReadPosRankSum=2.393;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:4,71:76:99:910,105,0 chrXIV 302073 . T A 1779 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.61;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1812,201,0 chrXIV 302118 . A T 2037 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.22;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2070,237,0 chrXIV 302222 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=67.9258;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.17;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1375,150,0 chrXIV 302243 . C T 1093 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=18.53;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1126,123,0 chrXIV 302333 . T A 77.26 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=37.6938;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=1.61;SB=-4.173e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:15:110,15,0 chrXIV 302384 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=14.12;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:56:93:824,93,0 chrXIV 302463 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.05;FS=0.000;HaplotypeScore=51.2719;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=0.36;SB=-5.128e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:6:53,6,0 chrXIV 302577 . T A 1101 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.32;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1134,126,0 chrXIV 302598 . T G 1051 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=17.23;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1084,123,0 chrXIV 302623 . T A 1037 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=15.48;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1070,117,0 chrXIV 302635 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2560;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=14.65;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1073,120,0 chrXIV 302943 . T C 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.253;QD=20.39;ReadPosRankSum=1.690;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1705,195,0 chrXIV 303090 . T C 967 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.27;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1000,117,0 chrXIV 303243 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.23;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1085,123,0 chrXIV 303460 . G T 1597 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=20.74;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1630,177,0 chrXIV 303465 . T G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.939;QD=18.23;ReadPosRankSum=1.690;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1546,177,0 chrXIV 303479 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=17.12;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1540,174,0 chrXIV 303486 . T C 1529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.767;QD=16.80;ReadPosRankSum=2.923;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:3,88:91:99:1562,180,0 chrXIV 303633 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.37;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1059,117,0 chrXIV 303657 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.02;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:870,96,0 chrXIV 303695 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=16.55;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1324,153,0 chrXIV 303956 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.15;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1316,150,0 chrXIV 304058 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.73;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1438,159,0 chrXIV 304064 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0522;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=16.36;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1391,159,0 chrXIV 304122 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.06;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1899,210,0 chrXIV 304313 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.39;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1623,180,0 chrXIV 304693 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=65.1824;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=18.56;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1425,156,0 chrXIV 304761 . A G 857 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=15.30;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:56:99:890,102,0 chrXIV 304801 . C T 1148 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.79;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1181,135,0 chrXIV 305066 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.13;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1228,144,0 chrXIV 305136 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.79;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1794,204,0 chrXIV 305208 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.19;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1368,153,0 chrXIV 305299 . A G 1685 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=9.222;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.169;QD=21.06;ReadPosRankSum=2.388;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1718,198,0 chrXIV 305568 . A G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.957;QD=20.80;ReadPosRankSum=1.687;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1614,186,0 chrXIV 305637 . G T 1825 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.8771;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.21;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1858,207,0 chrXIV 305670 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=17.51;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1854,219,0 chrXIV 305724 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=16.15;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1745,201,0 chrXIV 305808 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=15.1401;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=16.47;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1845,219,0 chrXIV 305863 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=10.614;HaplotypeScore=8.3155;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.012;QD=20.88;ReadPosRankSum=2.402;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2205,252,0 chrXIV 305936 . T C 1097 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=15.03;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1130,132,0 chrXIV 306024 . T C 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.611;QD=19.95;ReadPosRankSum=1.698;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:2088,246,0 chrXIV 306047 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.10;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2244,243,0 chrXIV 306090 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=21.59;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2386,264,0 chrXIV 306244 . T C 2452 SnpCluster AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=15.04;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:0,159:163:99:2485,285,0 chrXIV 306250 . A G 2217 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.955;DP=156;Dels=0.00;FS=13.500;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;MQRankSum=-2.387;QD=14.21;ReadPosRankSum=2.955;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:2250,264,0 chrXIV 306252 . C T 2340 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=122.7501;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=15.29;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2373,267,0 chrXIV 306286 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=11.46;SB=-1.701e+03 GT:AD:DP:GQ:PL 1/1:0,167:170:99:1981,219,0 chrXIV 306300 . A G 1852 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=12.18;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:1885,213,0 chrXIV 306326 . C T 2454 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=14.18;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:2487,279,0 chrXIV 306487 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.5248;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=11.45;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:0,145:148:99:1727,198,0 chrXIV 306600 . C T 3008 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=18.80;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3041,336,0 chrXIV 307339 . G A 2385 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2418,276,0 chrXIV 307749 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1934,213,0 chrXIV 307785 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2277,267,0 chrXIV 307827 . A G 2387 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.31;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2420,279,0 chrXIV 307869 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.15;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1645,180,0 chrXIV 307902 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.81;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1162,129,0 chrXIV 307920 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.52;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:931,105,0 chrXIV 307944 . C T 869 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.31;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:902,99,0 chrXIV 308304 . G A 1218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=5.209;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.736;QD=16.68;ReadPosRankSum=1.637;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1251,147,0 chrXIV 308305 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=5.149;HaplotypeScore=3.9096;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.626;QD=18.53;ReadPosRankSum=1.684;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1367,156,0 chrXIV 308412 . A G 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.192;QD=17.98;ReadPosRankSum=1.501;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:842,99,0 chrXIV 308641 . G A 1904 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.67;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1937,210,0 chrXIV 308667 . G T 1450 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.42;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1483,165,0 chrXIV 308764 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.02;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1299,147,0 chrXIV 308922 . G C 1386 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.38;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1419,162,0 chrXIV 309027 . T C 1176 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.55;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1209,138,0 chrXIV 309212 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.41;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:870,99,0 chrXIV 309245 . T C 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=58;Dels=0.00;FS=3.039;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.129;QD=17.28;ReadPosRankSum=2.365;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1035,117,0 chrXIV 309362 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.49;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1170,135,0 chrXIV 309497 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=65;Dels=0.00;FS=10.393;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.083;QD=18.26;ReadPosRankSum=2.374;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1220,147,0 chrXIV 309849 . C T 1208 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=15.49;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1241,135,0 chrXIV 310003 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.35;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1577,180,0 chrXIV 310016 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=15.60;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1359,150,0 chrXIV 310045 . A G 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.084;QD=16.66;ReadPosRankSum=2.391;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1416,162,0 chrXIV 310181 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.37;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1622,183,0 chrXIV 310209 . C G 1555 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.21;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1588,177,0 chrXIV 310319 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=16.94;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:931,99,0 chrXIV 310493 . T C 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.087;QD=21.53;ReadPosRankSum=1.522;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2229,252,0 chrXIV 310539 . T C 2173 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.40;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2206,255,0 chrXIV 310616 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=4.179;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.409;QD=21.94;ReadPosRankSum=1.693;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1986,228,0 chrXIV 310729 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.75;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2315,258,0 chrXIV 311115 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.04;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1674,189,0 chrXIV 311231 . A T 2226 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.61;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2259,243,0 chrXIV 311271 . G T 2026 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2059,231,0 chrXIV 311376 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.33;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1270,138,0 chrXIV 311614 . G A 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.114;QD=16.75;ReadPosRankSum=1.299;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:988,114,0 chrXIV 311655 . T A 1366 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.39;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1399,156,0 chrXIV 312291 . A G 1210 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.51;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1243,144,0 chrXIV 312312 . A G 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=88;Dels=0.00;FS=11.059;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.210;QD=15.97;ReadPosRankSum=2.366;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1438,165,0 chrXIV 312912 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.44;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1724,186,0 chrXIV 313160 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.05;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1336,153,0 chrXIV 313182 . C T 1269 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.26;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1302,147,0 chrXIV 313482 . C T 1223 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.46;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1256,147,0 chrXIV 313792 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.03;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1631,183,0 chrXIV 313908 . A G 2480 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.31;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2513,279,0 chrXIV 313965 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.99;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1688,189,0 chrXIV 314331 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=5.389;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.522;QD=17.64;ReadPosRankSum=1.690;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1497,177,0 chrXIV 314373 . C A 1373 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.34;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1406,153,0 chrXIV 314700 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.21;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1508,174,0 chrXIV 314885 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1836,207,0 chrXIV 315396 . A G 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=61;Dels=0.00;FS=2.448;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.102;QD=18.16;ReadPosRankSum=3.045;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:4,57:61:99:1141,132,0 chrXIV 315475 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.96;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1342,147,0 chrXIV 315726 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.34;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1036,123,0 chrXIV 315771 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1145,126,0 chrXIV 315867 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=4.228;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.962;QD=23.22;ReadPosRankSum=1.655;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1078,120,0 chrXIV 315912 . T C 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.247;QD=21.47;ReadPosRankSum=1.662;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1085,123,0 chrXIV 316032 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.69;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1855,210,0 chrXIV 316244 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.78;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1633,180,0 chrXIV 316253 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.67;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1331,153,0 chrXIV 316562 . A G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.005;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.1833;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.525;QD=16.88;ReadPosRankSum=1.045;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1265,141,0 chrXIV 316782 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.31;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1211,135,0 chrXIV 316985 . G A 981 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=15.82;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1014,117,0 chrXIV 317015 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.14;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1194,138,0 chrXIV 317303 . A G 1785 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=14.3972;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.00;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1818,207,0 chrXIV 317588 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.064;QD=19.96;ReadPosRankSum=1.607;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1690,192,0 chrXIV 318003 . C T 2826 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7278;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.36;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2859,315,0 chrXIV 318127 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.3225;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.98;SB=-1.544e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2697,297,0 chrXIV 318591 . G T 2016 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.9167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2049,228,0 chrXIV 318794 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.17;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1889,216,0 chrXIV 318970 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.03;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1631,186,0 chrXIV 319024 . A T 1180 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1213,132,0 chrXIV 319149 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.253;QD=20.22;ReadPosRankSum=1.624;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1974,225,0 chrXIV 319911 . G A 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=95;Dels=0.01;FS=6.509;HaplotypeScore=23.9120;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.700;QD=19.75;ReadPosRankSum=1.695;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1909,190,0 chrXIV 320007 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1644,183,0 chrXIV 320277 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.37;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1724,192,0 chrXIV 320457 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.39;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1155,135,0 chrXIV 321214 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.50;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1017,114,0 chrXIV 321987 . T G 819 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=15.17;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:852,99,0 chrXIV 322144 . C T 623 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,27:28:72:656,72,0 chrXIV 322462 . A G 1294 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1327,159,0 chrXIV 322794 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.77;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1992,219,0 chrXIV 322930 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.87;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1258,138,0 chrXIV 323011 . T G 810 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-0.949;QD=14.46;ReadPosRankSum=2.362;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:843,102,0 chrXIV 323014 . C T 995 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=17.16;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1028,114,0 chrXIV 323069 . A G 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=7.898;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.244;QD=16.90;ReadPosRankSum=2.357;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:1824,207,0 chrXIV 323136 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.24;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2645,309,0 chrXIV 323238 . A C 2254 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.07;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2287,264,0 chrXIV 323309 . A G 1419 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.71;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1452,162,0 chrXIV 323530 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=15.54;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1494,171,0 chrXIV 323774 . G C 1068 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.41;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1101,126,0 chrXIV 323787 . A G 979 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.98;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1012,114,0 chrXIV 323874 . C G 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1280,150,0 chrXIV 323947 . G T 1632 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.74;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1665,183,0 chrXIV 324247 . G C 877 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=15.95;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:910,108,0 chrXIV 324447 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1394,153,0 chrXIV 324866 . T C 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=109;Dels=0.00;FS=2.977;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.330;QD=21.20;ReadPosRankSum=2.404;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2344,261,0 chrXIV 325094 . G A 3041 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.0635;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.20;SB=-1.756e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3074,336,0 chrXIV 325458 . C T 2289 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.88;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2322,255,0 chrXIV 325628 . T A 2106 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.918;HaplotypeScore=6.9688;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.294;QD=19.68;ReadPosRankSum=1.667;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2139,234,0 chrXIV 326003 . G A 2996 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.55;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3029,336,0 chrXIV 326012 . G A 2562 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=17.79;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2595,297,0 chrXIV 326398 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=113;Dels=0.00;FS=2.576;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.223;QD=21.35;ReadPosRankSum=2.884;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2446,285,0 chrXIV 326545 . C A 859 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=12.5450;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=13.85;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:892,99,0 chrXIV 326625 . C G 2053 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2086,240,0 chrXIV 326722 . A G 3149 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.65;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3182,381,0 chrXIV 327569 . T G 1546 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.32;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1579,177,0 chrXIV 327681 . T G 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=61;Dels=0.00;FS=9.258;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.309;QD=16.74;ReadPosRankSum=2.327;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:2,58:61:99:1054,117,0 chrXIV 328022 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.31;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1930,216,0 chrXIV 328483 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1744,192,0 chrXIV 328646 . T C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=88;Dels=0.00;FS=5.520;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.046;QD=22.67;ReadPosRankSum=2.391;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:2028,228,0 chrXIV 328880 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.24;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2306,255,0 chrXIV 330165 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.82;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1653,180,0 chrXIV 330284 . A T 1320 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.00;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1353,150,0 chrXIV 330285 . T G 1326 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.40;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1359,153,0 chrXIV 330365 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.51;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1625,180,0 chrXIV 330395 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1796,198,0 chrXIV 331139 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.51;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:956,105,0 chrXIV 331401 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.30;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2272,255,0 chrXIV 331417 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2274;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.29;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1827,210,0 chrXIV 331500 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.84;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1578,171,0 chrXIV 332278 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.96;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2165,243,0 chrXIV 332293 . T C 1888 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.60;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1921,219,0 chrXIV 332613 . C G 2081 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.75;SB=-1.239e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2114,237,0 chrXIV 333289 . G A 882 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=87.2962;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=9.09;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:915,102,0 chrXIV 333748 . A G 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.121;QD=22.13;ReadPosRankSum=1.681;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1560,180,0 chrXIV 333895 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.09;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1404,153,0 chrXIV 333907 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.40;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1502,171,0 chrXIV 334339 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.47;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1507,165,0 chrXIV 335000 . T A 2093 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.52;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2126,234,0 chrXIV 335002 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.70;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1924,219,0 chrXIV 335033 . A G 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.174;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=-0.834;QD=18.25;ReadPosRankSum=1.689;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1511,177,0 chrXIV 335091 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.01;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1292,150,0 chrXIV 335092 . T A 1408 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.77;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1441,159,0 chrXIV 335197 . G A 2374 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.40;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2407,270,0 chrXIV 335320 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.38;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1786,198,0 chrXIV 335341 . A T 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=92;Dels=0.00;FS=4.323;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.904;QD=17.60;ReadPosRankSum=1.657;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1652,186,0 chrXIV 335376 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=16.85;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1448,165,0 chrXIV 335385 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=16.79;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1326,144,0 chrXIV 335395 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=16.68;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1301,144,0 chrXIV 335616 . C T 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.490;QD=20.67;ReadPosRankSum=1.692;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1852,204,0 chrXIV 336158 . T C 1116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=57;Dels=0.00;FS=4.851;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.472;QD=19.58;ReadPosRankSum=1.669;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1149,132,0 chrXIV 336315 . C G 1150 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.85;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1183,141,0 chrXIV 336465 . A G 1459 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=72;Dels=0.00;FS=10.067;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.198;QD=20.26;ReadPosRankSum=2.379;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,67:72:99:1492,171,0 chrXIV 336508 . A T 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.89;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,195,0 chrXIV 336657 . A G 1814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=88;Dels=0.00;FS=6.480;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.182;QD=20.61;ReadPosRankSum=2.394;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1847,207,0 chrXIV 336812 . T C 2581 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.98;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2614,297,0 chrXIV 336941 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.8717;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.04;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1958,225,0 chrXIV 336952 . A G 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-1.119;QD=14.54;ReadPosRankSum=1.640;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:1705,195,0 chrXIV 336970 . A C 1418 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=13.13;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1451,165,0 chrXIV 337051 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.40;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2303,255,0 chrXIV 337877 . G A 1816 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.21;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1849,201,0 chrXIV 338161 . T C 2549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=3.008;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.577;QD=22.56;ReadPosRankSum=2.232;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2582,300,0 chrXIV 338282 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.0111;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.21;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2642,297,0 chrXIV 338359 . C T 2151 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.30;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2184,246,0 chrXIV 338424 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.70;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2020,222,0 chrXIV 338522 . G T 1839 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.57;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1872,210,0 chrXIV 338586 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.14;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2269,249,0 chrXIV 338610 . T C 2080 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.81;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2113,243,0 chrXIV 338838 . A G 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=2.890;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.434;QD=19.63;ReadPosRankSum=2.377;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1368,156,0 chrXIV 339555 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.02;FS=0.000;HaplotypeScore=13.4104;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.89;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2642,291,0 chrXIV 340266 . A T 1634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=-1.253;QD=17.20;ReadPosRankSum=1.695;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1667,192,0 chrXIV 340286 . A T 1363 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=14.20;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1396,162,0 chrXIV 340288 . A C 1441 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=15.33;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1474,165,0 chrXIV 340306 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=12.54;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1274,138,0 chrXIV 340618 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.64;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1602,183,0 chrXIV 340804 . G T 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.60;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,177,0 chrXIV 340840 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.35;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1501,174,0 chrXIV 340939 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.37;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1422,156,0 chrXIV 340976 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.33;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1483,168,0 chrXIV 341067 . C A 2256 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.12;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2289,252,0 chrXIV 341291 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.56;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1871,207,0 chrXIV 341465 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.1860;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.71;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1736,192,0 chrXIV 341642 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.791;QD=19.41;ReadPosRankSum=1.694;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1838,207,0 chrXIV 341705 . A T 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.402;QD=16.55;ReadPosRankSum=1.691;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1423,162,0 chrXIV 341764 . G C 1839 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.36;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1872,222,0 chrXIV 342049 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2455,273,0 chrXIV 342273 . C G 1576 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1609,189,0 chrXIV 342370 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.27;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1652,183,0 chrXIV 342707 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.28;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1615,183,0 chrXIV 342782 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.77;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1507,168,0 chrXIV 342811 . C A 1302 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.6086;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.34;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1335,147,0 chrXIV 342917 . G T 1325 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=15.23;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1358,153,0 chrXIV 342923 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=15.23;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1236,144,0 chrXIV 342965 . A C 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=5.8637;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.183;QD=15.94;ReadPosRankSum=1.690;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1340,153,0 chrXIV 343067 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.70;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1236,135,0 chrXIV 343155 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.83;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1452,159,0 chrXIV 343922 . G T 1596 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.70;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1629,180,0 chrXIV 344176 . A T 1705 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2160;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.83;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1738,189,0 chrXIV 344260 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.14;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1448,162,0 chrXIV 344398 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.04;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1232,138,0 chrXIV 344873 . T G 2716 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9537;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2749,315,0 chrXIV 345058 . C T 2484 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.21;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2517,273,0 chrXIV 345099 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.000;QD=19.27;ReadPosRankSum=1.653;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1729,195,0 chrXIV 345121 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.64;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1568,174,0 chrXIV 345668 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.232;QD=21.52;ReadPosRankSum=2.337;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1927,216,0 chrXIV 345712 . A G 2445 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.85;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2478,279,0 chrXIV 345744 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.8594;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.71;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2435,279,0 chrXIV 345915 . G A 2662 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.6885;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.75;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2695,291,0 chrXIV 346068 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=15.6777;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.67;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2047,225,0 chrXIV 346103 . T G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=99;Dels=0.00;FS=8.776;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=1.219;QD=19.03;ReadPosRankSum=2.400;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:1917,219,0 chrXIV 346115 . A T 1866 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=18.48;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1899,216,0 chrXIV 346254 . A G 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.256;HaplotypeScore=16.3302;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.019;QD=17.15;ReadPosRankSum=1.580;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1594,180,0 chrXIV 346414 . A C 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.070;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.258;QD=20.00;ReadPosRankSum=1.685;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,72:75:99:1533,177,0 chrXIV 346690 . T A 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.958;DP=113;Dels=0.00;FS=11.006;HaplotypeScore=11.5327;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.580;QD=20.96;ReadPosRankSum=4.101;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:6,107:113:99:2401,264,0 chrXIV 347047 . T C 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=105;Dels=0.00;FS=11.203;HaplotypeScore=10.2284;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.172;QD=19.00;ReadPosRankSum=2.402;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2028,231,0 chrXIV 347194 . T C 2642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.0527;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.097;QD=23.59;ReadPosRankSum=2.405;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:2,109:112:99:2675,303,0 chrXIV 347234 . G A 1505 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.15;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1538,168,0 chrXIV 347517 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.64;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1973,222,0 chrXIV 347615 . T C 758 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.95;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:791,90,0 chrXIV 347622 . T A 722 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.00;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:755,84,0 chrXIV 347708 . G C 1602 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.25;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1635,189,0 chrXIV 347728 . A G 1628 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.26;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1661,186,0 chrXIV 347745 . T C 1261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.006;QD=20.02;ReadPosRankSum=1.621;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1294,147,0 chrXIV 347930 . T C 2459 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.42;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2492,279,0 chrXIV 348083 . A G 2592 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=15.9601;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2625,300,0 chrXIV 348133 . T C 3067 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.92;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3100,348,0 chrXIV 348360 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.689;QD=20.00;ReadPosRankSum=1.646;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1633,186,0 chrXIV 348462 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=18.22;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1472,162,0 chrXIV 348465 . T C 1358 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=16.77;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1391,159,0 chrXIV 348486 . C G 1381 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.48;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1414,162,0 chrXIV 348533 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=15.93;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1753,192,0 chrXIV 348537 . A G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=110;Dels=0.00;FS=13.158;HaplotypeScore=4.0400;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=1.395;QD=14.92;ReadPosRankSum=2.698;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1674,192,0 chrXIV 348669 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.81;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1938,210,0 chrXIV 348734 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.31;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1150,123,0 chrXIV 348745 . A G 784 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.33;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:817,96,0 chrXIV 348823 . T C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.925;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.469;QD=18.65;ReadPosRankSum=2.381;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1357,156,0 chrXIV 348831 . A C 1372 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=6.7823;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.32;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1405,159,0 chrXIV 348874 . T A 1034 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=15.43;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1067,117,0 chrXIV 348895 . A G 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.603;DP=86;Dels=0.00;FS=8.159;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;MQRankSum=-2.603;QD=9.58;ReadPosRankSum=2.145;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:3,81:86:99:857,99,0 chrXIV 348902 . A T 934 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4185;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=11.25;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:967,111,0 chrXIV 348931 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=12.48;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1368,153,0 chrXIV 348956 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=14.60;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1727,198,0 chrXIV 349001 . T A 1723 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.40;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1756,201,0 chrXIV 349014 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.58;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2030,225,0 chrXIV 349259 . A G 2429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=1.252;QD=18.54;ReadPosRankSum=1.705;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2462,279,0 chrXIV 349397 . A G 2102 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.11;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2135,249,0 chrXIV 349523 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.69;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1175,135,0 chrXIV 349556 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.01;FS=3.310;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.393;QD=15.45;ReadPosRankSum=1.547;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1207,138,0 chrXIV 349628 . C T 1246 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.88;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1279,135,0 chrXIV 349972 . T C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.276;QD=17.81;ReadPosRankSum=1.687;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1404,162,0 chrXIV 349976 . T A 1492 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.89;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1525,165,0 chrXIV 350057 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.79;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1461,162,0 chrXIV 350461 . T C 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=64;Dels=0.00;FS=7.454;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.490;QD=18.50;ReadPosRankSum=2.254;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1217,144,0 chrXIV 350489 . A C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=59;Dels=0.00;FS=3.502;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.928;QD=20.75;ReadPosRankSum=1.670;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1257,141,0 chrXIV 350601 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=20.73;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1629,177,0 chrXIV 350657 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=16.72;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1153,132,0 chrXIV 350676 . T C 1099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=42.2163;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=-0.027;QD=17.17;ReadPosRankSum=1.677;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1132,126,0 chrXIV 350727 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.62;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1132,129,0 chrXIV 350837 . C A 816 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.98;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:849,93,0 chrXIV 350848 . A C 748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.472;QD=15.91;ReadPosRankSum=1.496;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:1,43:47:90:781,90,0 chrXIV 350864 . T C 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=5.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=0.955;QD=16.59;ReadPosRankSum=1.662;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:96:846,96,0 chrXIV 350966 . C G 1303 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=14.48;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1336,153,0 chrXIV 350980 . T C 991 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=12.54;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1024,114,0 chrXIV 350992 . A G 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;MQRankSum=-1.644;QD=10.95;ReadPosRankSum=1.644;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:898,105,0 chrXIV 351006 . C G 768 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=9.97;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:93:801,93,0 chrXIV 351009 . A T 751 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=9.51;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:87:784,87,0 chrXIV 351050 . T G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=84;Dels=0.00;FS=2.616;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=0.609;QD=17.64;ReadPosRankSum=2.212;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1515,180,0 chrXIV 351221 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.02;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1168,135,0 chrXIV 351233 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.22;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1044,120,0 chrXIV 351442 . C T 2769 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.33;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2802,315,0 chrXIV 351622 . T G 1810 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=21.29;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1843,210,0 chrXIV 351782 . T C 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=17.9471;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.464;QD=18.32;ReadPosRankSum=1.598;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2396,276,0 chrXIV 351850 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.23;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2345,255,0 chrXIV 351898 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1585,171,0 chrXIV 352022 . G A 2410 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2443,270,0 chrXIV 352437 . C T 420 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=11.67;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:453,51,0 chrXIV 352733 . G C 708 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.09;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:741,84,0 chrXIV 353111 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.40;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2490,273,0 chrXIV 353151 . T C 2681 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.98;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2714,306,0 chrXIV 353234 . A G 2839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=7.543;HaplotypeScore=8.2158;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.259;QD=21.84;ReadPosRankSum=2.411;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2872,330,0 chrXIV 353490 . A G 1618 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.4966;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.60;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1651,189,0 chrXIV 353696 . C T 2071 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.84;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2104,243,0 chrXIV 353786 . A T 1749 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.61;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1782,198,0 chrXIV 353924 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.87;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1202,132,0 chrXIV 354061 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=21.85;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1912,210,0 chrXIV 354131 . G C 1963 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.25;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1996,231,0 chrXIV 354641 . A G 2586 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=22.10;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2619,309,0 chrXIV 354740 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.8367;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.45;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1833,207,0 chrXIV 354851 . A G 1985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=106;Dels=0.00;FS=3.046;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.249;QD=18.73;ReadPosRankSum=2.402;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:2,102:106:99:2018,234,0 chrXIV 354924 . G T 1774 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.63;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1807,195,0 chrXIV 354985 . G A 1439 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=14.39;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1472,165,0 chrXIV 354992 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=13.74;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1421,162,0 chrXIV 355016 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=11.78;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1270,150,0 chrXIV 355031 . G A 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-0.238;QD=12.52;ReadPosRankSum=-0.917;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1310,150,0 chrXIV 355079 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.38;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1855,201,0 chrXIV 355610 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=17.48;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:872,96,0 chrXIV 355617 . T C 707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;MQRankSum=-0.650;QD=14.73;ReadPosRankSum=1.660;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:84:740,84,0 chrXIV 355627 . T A 647 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=12.44;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:78:680,78,0 chrXIV 355641 . G A 434 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.85;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:467,51,0 chrXIV 355643 . G A 419 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.47;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:452,51,0 chrXIV 355644 . A G 416 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.40;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:51:449,51,0 chrXIV 355985 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3149;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=22.53;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2173,240,0 chrXIV 356010 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=22.20;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2120,234,0 chrXIV 356062 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.0516;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.046;QD=19.74;ReadPosRankSum=1.699;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2145,240,0 chrXIV 356343 . G T 1206 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=14.53;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1239,135,0 chrXIV 356361 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=14.22;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1156,129,0 chrXIV 356370 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=13.45;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1163,129,0 chrXIV 356379 . A C 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=87;Dels=0.00;FS=5.200;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=-1.961;QD=14.33;ReadPosRankSum=3.352;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:4,82:87:99:1280,144,0 chrXIV 356473 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.42;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1728,195,0 chrXIV 356489 . T C 1716 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.50;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1749,201,0 chrXIV 356515 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.50;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2003,225,0 chrXIV 356568 . T G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.896;QD=21.36;ReadPosRankSum=1.643;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2511,297,0 chrXIV 356615 . A C 2302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=0.556;QD=21.31;ReadPosRankSum=0.523;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2335,261,0 chrXIV 356637 . G T 1962 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.43;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1995,225,0 chrXIV 356684 . T C 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=104;Dels=0.00;FS=5.349;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.297;QD=19.20;ReadPosRankSum=2.931;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:3,99:104:99:2030,237,0 chrXIV 356726 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.49;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2192,249,0 chrXIV 356876 . A G 1098 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=15.69;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1131,132,0 chrXIV 356906 . A T 1482 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=16.29;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1515,177,0 chrXIV 356935 . T A 1839 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=15.99;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1872,207,0 chrXIV 356959 . T G 1919 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=16.26;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:1952,216,0 chrXIV 357088 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.73;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1552,177,0 chrXIV 357348 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=17.11;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1761,195,0 chrXIV 357361 . A T 1916 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=16.24;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1949,219,0 chrXIV 357370 . A G 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-1.279;QD=15.07;ReadPosRankSum=2.350;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:2,122:125:99:1917,213,0 chrXIV 357524 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.82;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1782,207,0 chrXIV 357854 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.68;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2225,255,0 chrXIV 357873 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0087;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.60;SB=-1.425e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2405,264,0 chrXIV 358067 . T C 2007 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.41;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2040,228,0 chrXIV 358300 . G C 2068 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.3321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.15;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,102:108:99:2101,237,0 chrXIV 358346 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.115;QD=20.08;ReadPosRankSum=1.655;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1840,210,0 chrXIV 358507 . G C 2141 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.95;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2174,243,0 chrXIV 358519 . C G 2206 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.08;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2239,261,0 chrXIV 358643 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3748;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.99;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2012,231,0 chrXIV 358757 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.98;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1527,168,0 chrXIV 358910 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.49;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1447,162,0 chrXIV 359017 . T A 1010 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.41;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1043,117,0 chrXIV 359040 . T C 475 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=17.59;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:57:508,57,0 chrXIV 359088 . C G 429 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.50;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:54:462,54,0 chrXIV 359147 . G A 212.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=15.14;SB=-1.619e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:27:245,27,0 chrXIV 359204 . T C 309 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=4.102;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-1.542;QD=17.17;ReadPosRankSum=1.542;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:1,17:18:39:342,39,0 chrXIV 359506 . T G 424 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.20;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:457,51,0 chrXIV 359582 . A G 605 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=14.76;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:75:638,75,0 chrXIV 360426 . T C 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=70;Dels=0.00;FS=5.987;HaplotypeScore=9.7350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.809;QD=17.86;ReadPosRankSum=2.898;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:3,66:70:99:1283,147,0 chrXIV 360781 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.18;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1386,150,0 chrXIV 361125 . T C 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.024;QD=19.43;ReadPosRankSum=1.658;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1840,207,0 chrXIV 361149 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.24;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1976,219,0 chrXIV 361314 . G T 1155 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.99;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1188,132,0 chrXIV 361325 . C G 1169 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.98;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1202,135,0 chrXIV 361529 . C A 1732 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.24;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1765,192,0 chrXIV 361551 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.95;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1569,174,0 chrXIV 361589 . A G 892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.420;DP=65;Dels=0.00;FS=11.863;HaplotypeScore=10.2064;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.640;QD=13.72;ReadPosRankSum=3.674;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:5,58:65:99:925,108,0 chrXIV 361812 . G C 1264 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.00;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1297,147,0 chrXIV 361814 . C A 1276 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=16.36;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1309,144,0 chrXIV 361923 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.71;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1731,198,0 chrXIV 362483 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.83;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1560,171,0 chrXIV 362538 . T C 973 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=15.44;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1006,114,0 chrXIV 362544 . C A 999 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.93;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1032,117,0 chrXIV 362791 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.36;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1051,114,0 chrXIV 362793 . C T 1038 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.76;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1071,117,0 chrXIV 362878 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5101;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.52;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1195,132,0 chrXIV 362940 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.36;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1059,120,0 chrXIV 362946 . A C 974 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.88;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1007,114,0 chrXIV 362970 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.36;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1153,126,0 chrXIV 362994 . T C 950 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=0.710;QD=15.57;ReadPosRankSum=1.675;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:983,111,0 chrXIV 363057 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.87;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1901,204,0 chrXIV 363141 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.92;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2027,222,0 chrXIV 363238 . T C 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=69;Dels=0.00;FS=8.250;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.520;QD=21.61;ReadPosRankSum=2.379;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1524,174,0 chrXIV 363393 . T A 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=4.293;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.309;QD=21.99;ReadPosRankSum=1.705;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2892,318,0 chrXIV 363496 . T C 1757 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1790,207,0 chrXIV 363549 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1706,186,0 chrXIV 363861 . C T 1324 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.76;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1357,150,0 chrXIV 364317 . A T 1077 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1110,123,0 chrXIV 364561 . T C 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.039;QD=18.02;ReadPosRankSum=1.578;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:96:844,96,0 chrXIV 364611 . T C 936 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:99:969,111,0 chrXIV 364966 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.75;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1882,204,0 chrXIV 365449 . G A 1060 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.67;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1093,120,0 chrXIV 365714 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.79;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1842,198,0 chrXIV 365801 . A T 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=119;Dels=0.00;FS=2.417;HaplotypeScore=2.8210;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=0.578;QD=15.26;ReadPosRankSum=2.802;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:3,116:119:99:1849,207,0 chrXIV 365802 . T G 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=120;Dels=0.00;FS=2.443;HaplotypeScore=2.8210;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=1.641;QD=14.82;ReadPosRankSum=2.684;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:3,115:120:99:1812,207,0 chrXIV 365824 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.09;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2306,258,0 chrXIV 365847 . G A 2272 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.08;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2305,255,0 chrXIV 365949 . C T 2917 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.7794;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.69;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2950,330,0 chrXIV 365984 . C T 2671 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.89;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2704,297,0 chrXIV 366070 . G A 2493 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.43;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2526,288,0 chrXIV 366158 . G T 3107 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=16.2379;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.31;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:3140,348,0 chrXIV 366310 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.12;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2063,234,0 chrXIV 366581 . G T 2489 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.48;SB=-1.344e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2522,279,0 chrXIV 366929 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.99;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1692,189,0 chrXIV 367370 . T C 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=52;Dels=0.00;FS=7.589;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-2.165;QD=17.85;ReadPosRankSum=2.355;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:961,111,0 chrXIV 367502 . A G 1572 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:71:99:1605,189,0 chrXIV 367644 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.91;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1132,132,0 chrXIV 367843 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.43;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1397,150,0 chrXIV 367901 . A G 2304 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.53;SB=-1.437e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2337,261,0 chrXIV 368045 . C T 2771 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.48;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2804,312,0 chrXIV 368183 . C T 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=4.033;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.321;QD=21.71;ReadPosRankSum=1.689;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1813,181,0 chrXIV 368391 . G A 3120 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.37;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3153,348,0 chrXIV 368957 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.45;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1177,132,0 chrXIV 368967 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.26;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1165,132,0 chrXIV 369029 . T A 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=68;Dels=0.00;FS=3.789;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.801;QD=16.50;ReadPosRankSum=1.681;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1155,126,0 chrXIV 369143 . A G 1018 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.36;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1051,123,0 chrXIV 369343 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.53;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1478,159,0 chrXIV 369348 . T C 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.353;QD=18.75;ReadPosRankSum=1.685;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1402,159,0 chrXIV 369363 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.57;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1403,153,0 chrXIV 369447 . A T 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.681;QD=20.71;ReadPosRankSum=1.609;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1193,129,0 chrXIV 369591 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.22;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2007,234,0 chrXIV 369651 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.22;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1691,195,0 chrXIV 369711 . A T 1613 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.16;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1646,183,0 chrXIV 370178 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.78;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,96:101:99:2132,237,0 chrXIV 370196 . T G 2191 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.966;QD=21.07;ReadPosRankSum=1.666;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2224,249,0 chrXIV 371516 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6864;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.56;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2254,255,0 chrXIV 371753 . A T 2942 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=137;Dels=0.00;FS=2.907;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.081;QD=21.47;ReadPosRankSum=2.395;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2975,327,0 chrXIV 371862 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2343,264,0 chrXIV 372107 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.27;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1671,180,0 chrXIV 372259 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.90;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1537,171,0 chrXIV 372366 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.58;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1299,141,0 chrXIV 372715 . T C 1576 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.59;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1609,183,0 chrXIV 372919 . T A 1643 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1676,183,0 chrXIV 373080 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.81;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2212,252,0 chrXIV 373134 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.73;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1700,192,0 chrXIV 373333 . A G 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=4.314;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.235;QD=20.33;ReadPosRankSum=1.689;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1720,204,0 chrXIV 373375 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.13;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1603,171,0 chrXIV 373766 . C A 2533 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=22.82;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2566,282,0 chrXIV 373799 . A G 2089 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=4.349;HaplotypeScore=4.8643;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.626;QD=21.10;ReadPosRankSum=1.661;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2122,240,0 chrXIV 373925 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.06;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1496,174,0 chrXIV 373946 . T C 1606 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.12;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1639,183,0 chrXIV 374054 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=16.95;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2203,240,0 chrXIV 374065 . A G 1757 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.164;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;MQRankSum=-0.341;QD=15.69;ReadPosRankSum=2.406;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:1790,201,0 chrXIV 374157 . T G 1731 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.48;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1764,198,0 chrXIV 374306 . A G 1374 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.63;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1407,162,0 chrXIV 374471 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.05;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1233,138,0 chrXIV 374659 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.91;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1484,168,0 chrXIV 374712 . C G 2074 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.95;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2107,237,0 chrXIV 374839 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.53;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1922,222,0 chrXIV 375301 . A G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=15.758;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.303;QD=23.31;ReadPosRankSum=2.242;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1711,192,0 chrXIV 375782 . A G 1060 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.20;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1093,129,0 chrXIV 375848 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.03;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1415,156,0 chrXIV 375878 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.87;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1248,138,0 chrXIV 376070 . G A 1203 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.43;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1236,141,0 chrXIV 376161 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.05;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1254,138,0 chrXIV 376313 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1815,198,0 chrXIV 376490 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=5.593;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.657;QD=21.32;ReadPosRankSum=1.692;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1909,225,0 chrXIV 376529 . A C 1467 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.57;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1500,168,0 chrXIV 376728 . T C 1856 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.75;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1889,210,0 chrXIV 376841 . T C 1646 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.29;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1679,189,0 chrXIV 376853 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.92;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1646,180,0 chrXIV 377057 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.31;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1983,219,0 chrXIV 377102 . C T 1857 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.87;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1890,210,0 chrXIV 377627 . A G 1499 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.11;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1532,171,0 chrXIV 377864 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.11;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1984,225,0 chrXIV 377887 . G T 1646 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.49;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1679,183,0 chrXIV 378863 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.87;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2308,258,0 chrXIV 379700 . C T 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.315;QD=22.77;ReadPosRankSum=1.365;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1536,168,0 chrXIV 380470 . A G 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.272;QD=20.21;ReadPosRankSum=1.646;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2478,282,0 chrXIV 380870 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.81;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1155,129,0 chrXIV 380871 . C T 1147 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.65;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1180,132,0 chrXIV 380926 . T C 589 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.2460;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=14.37;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:72:622,72,0 chrXIV 381623 . G A 1642 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.09;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1675,189,0 chrXIV 381889 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.25;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1428,156,0 chrXIV 382139 . C T 1279 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.27;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1312,147,0 chrXIV 382260 . T C 773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=53;Dels=0.00;FS=4.685;HaplotypeScore=6.6881;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-1.178;QD=14.58;ReadPosRankSum=1.663;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,49:53:93:806,93,0 chrXIV 382268 . T C 808 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.16;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:841,99,0 chrXIV 382312 . A T 1156 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.95;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1189,129,0 chrXIV 382331 . G A 1067 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.40;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1100,120,0 chrXIV 382352 . G A 1140 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.32;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1173,135,0 chrXIV 382577 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.95;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,71:75:99:1679,192,0 chrXIV 382693 . T A 1359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.91;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1392,162,0 chrXIV 382763 . A G 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.907;QD=21.95;ReadPosRankSum=1.622;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1438,165,0 chrXIV 383402 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.70;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1704,198,0 chrXIV 383543 . A T 1277 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.27;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1310,150,0 chrXIV 383575 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1268,138,0 chrXIV 383709 . A T 2026 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=18.76;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2059,234,0 chrXIV 383790 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=21.42;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1661,186,0 chrXIV 384238 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=90;Dels=0.00;FS=10.275;HaplotypeScore=8.9250;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.648;QD=19.07;ReadPosRankSum=2.876;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:3,86:90:99:1749,204,0 chrXIV 385111 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.19;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1542,171,0 chrXIV 385472 . C T 947 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.59;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:980,108,0 chrXIV 385521 . T A 1436 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.23;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1469,159,0 chrXIV 385702 . A T 1626 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.649;QD=19.36;ReadPosRankSum=1.690;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1659,192,0 chrXIV 386488 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.31;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1130,129,0 chrXIV 386540 . C G 1154 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.37;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1187,135,0 chrXIV 386641 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3673;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.57;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1329,147,0 chrXIV 386898 . A C 1177 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.65;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1210,138,0 chrXIV 387050 . C A 727 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.65;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:760,84,0 chrXIV 387197 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.92;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1765,195,0 chrXIV 387361 . A G 1021 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.9011;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.42;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1054,120,0 chrXIV 387532 . A C 1821 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.42;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1854,210,0 chrXIV 387540 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.882;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=0.512;QD=21.24;ReadPosRankSum=1.614;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1902,210,0 chrXIV 387811 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.96;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1605,177,0 chrXIV 387967 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.92;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1133,126,0 chrXIV 388136 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.87;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1222,135,0 chrXIV 388819 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.53;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1272,141,0 chrXIV 388979 . C A 1574 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.20;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1607,174,0 chrXIV 389281 . T G 956 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.51;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:989,111,0 chrXIV 389282 . A G 938 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.96;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:971,108,0 chrXIV 389323 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.06;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:972,111,0 chrXIV 389356 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.06;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1332,144,0 chrXIV 389396 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.69;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1175,132,0 chrXIV 389635 . A G 1054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.067;DP=59;Dels=0.00;FS=2.833;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.192;QD=17.86;ReadPosRankSum=0.021;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:2,56:59:99:1087,120,0 chrXIV 389671 . G A 975 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.90;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1008,111,0 chrXIV 390089 . G T 1580 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.7001;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.52;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1613,183,0 chrXIV 390137 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.51;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1609,180,0 chrXIV 390377 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1861,207,0 chrXIV 390506 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.46;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2191,240,0 chrXIV 391590 . T C 934 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=13.5854;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=12.79;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:967,111,0 chrXIV 391752 . A G 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=87;Dels=0.00;FS=5.880;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-1.058;QD=17.26;ReadPosRankSum=2.919;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1535,174,0 chrXIV 391772 . C A 1565 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.99;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1598,177,0 chrXIV 391796 . G T 1457 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=16.75;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1490,168,0 chrXIV 391871 . A G 706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=14.71;ReadPosRankSum=1.588;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:84:739,84,0 chrXIV 392063 . A G 652 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.76;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:685,78,0 chrXIV 392734 . A G 2001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=100;Dels=0.00;FS=4.905;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.227;QD=20.01;ReadPosRankSum=1.697;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2034,234,0 chrXIV 392754 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.23;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1631,180,0 chrXIV 393050 . A G 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.622;HaplotypeScore=5.1893;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-1.681;QD=17.29;ReadPosRankSum=2.386;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1364,156,0 chrXIV 393053 . A C 1298 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.6120;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.78;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1331,150,0 chrXIV 393101 . T G 1206 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.74;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1239,144,0 chrXIV 393110 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=19.04;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1537,168,0 chrXIV 393703 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1208,135,0 chrXIV 393915 . T A 2232 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5782;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.86;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2265,252,0 chrXIV 394167 . A G 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.522;QD=14.93;ReadPosRankSum=1.690;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1302,147,0 chrXIV 394187 . T C 1039 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=12.52;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1072,123,0 chrXIV 394241 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=13.97;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:899,102,0 chrXIV 395338 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.17;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1115,129,0 chrXIV 395734 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.40;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1255,144,0 chrXIV 396226 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=16.43;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1216,138,0 chrXIV 397986 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.217;QD=21.20;ReadPosRankSum=1.660;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2068,231,0 chrXIV 397996 . T G 1763 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.16;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1796,210,0 chrXIV 398211 . A G 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.570;DP=73;Dels=0.00;FS=2.623;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.014;QD=18.48;ReadPosRankSum=2.848;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1382,156,0 chrXIV 398221 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.75;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1158,135,0 chrXIV 398280 . A G 834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.513;QD=15.44;ReadPosRankSum=1.412;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:867,102,0 chrXIV 398341 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.63;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1179,132,0 chrXIV 398440 . T C 908 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=15.39;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:941,105,0 chrXIV 398505 . A G 674 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.9225;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=16.85;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:78:707,78,0 chrXIV 398753 . C T 841 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:874,96,0 chrXIV 398822 . A G 653 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.06;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:81:686,81,0 chrXIV 398918 . T C 628 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:75:661,75,0 chrXIV 398966 . A G 598 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.12;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:631,72,0 chrXIV 399107 . G A 1147 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.44;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1180,135,0 chrXIV 399245 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.32;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1163,129,0 chrXIV 399401 . C G 1274 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.55;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1307,150,0 chrXIV 400449 . T C 1509 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=1.683;QD=21.56;ReadPosRankSum=1.683;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1542,174,0 chrXIV 400694 . C G 1310 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=16.58;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1343,150,0 chrXIV 400727 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=16.41;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1576,177,0 chrXIV 400731 . C A 1491 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=16.21;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1524,168,0 chrXIV 400781 . T A 1451 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=14.37;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1484,165,0 chrXIV 400788 . G T 1361 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=14.48;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1394,156,0 chrXIV 400795 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=14.67;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1280,144,0 chrXIV 400901 . G A 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.257;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.155;QD=20.19;ReadPosRankSum=0.577;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2092,240,0 chrXIV 400998 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.83;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1104,123,0 chrXIV 401015 . T A 1152 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.53;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1185,132,0 chrXIV 401240 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.40;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2031,222,0 chrXIV 401251 . A T 2035 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3448;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.15;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2068,228,0 chrXIV 401376 . G T 1447 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.28;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1480,162,0 chrXIV 401852 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.56;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1842,207,0 chrXIV 401891 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9473;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.68;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1529,171,0 chrXIV 401952 . A G 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.481;QD=21.25;ReadPosRankSum=1.684;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1563,177,0 chrXIV 403294 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.80;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1775,201,0 chrXIV 403701 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.07;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1313,147,0 chrXIV 403835 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:968,108,0 chrXIV 404051 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8978;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.54;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1572,186,0 chrXIV 404467 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.85;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2217,240,0 chrXIV 404479 . C T 2323 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.20;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2356,261,0 chrXIV 404770 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.08;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1464,162,0 chrXIV 404995 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.79;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1480,171,0 chrXIV 405028 . T A 1078 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.11;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1111,123,0 chrXIV 405043 . A C 846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.681;QD=15.11;ReadPosRankSum=1.670;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:879,99,0 chrXIV 405097 . G A 1072 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.29;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1105,123,0 chrXIV 405175 . T A 1477 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.04;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1510,165,0 chrXIV 405754 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1811,201,0 chrXIV 405802 . C T 1558 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.61;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1591,180,0 chrXIV 405847 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.754;QD=22.46;ReadPosRankSum=2.387;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1785,207,0 chrXIV 405961 . A T 1973 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.97;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2006,222,0 chrXIV 406074 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.8466;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.45;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2058,228,0 chrXIV 406133 . A G 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.645;QD=20.48;ReadPosRankSum=1.692;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1794,201,0 chrXIV 406190 . T C 2266 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.58;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2299,261,0 chrXIV 406194 . T C 2230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=6.552;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.526;QD=20.27;ReadPosRankSum=2.405;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2263,252,0 chrXIV 406274 . T C 2559 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4777;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.98;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2592,291,0 chrXIV 406293 . C T 2648 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.70;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2681,294,0 chrXIV 406337 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2178,240,0 chrXIV 406495 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=5.185;HaplotypeScore=7.5577;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.192;QD=19.63;ReadPosRankSum=1.662;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1976,225,0 chrXIV 406753 . A T 1738 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.69;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1771,192,0 chrXIV 407152 . T G 1603 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.31;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1636,189,0 chrXIV 407285 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=3.443;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.638;QD=21.57;ReadPosRankSum=1.696;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,94:96:99:2104,237,0 chrXIV 407734 . C T 1350 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.15;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1383,153,0 chrXIV 407806 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.00;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1633,186,0 chrXIV 407884 . C T 1256 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.04;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1289,147,0 chrXIV 408124 . T C 2147 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.91;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2180,240,0 chrXIV 409114 . G A 3182 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.3678;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.01;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,157:159:99:3215,354,0 chrXIV 409315 . T G 2077 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.36;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2110,246,0 chrXIV 409622 . A G 1374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.357;QD=20.21;ReadPosRankSum=1.681;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1407,162,0 chrXIV 410563 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.64;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2427,267,0 chrXIV 410941 . A G 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.7050;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.508;QD=18.95;ReadPosRankSum=1.636;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2117,240,0 chrXIV 411667 . T A 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=4.191;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.237;QD=19.96;ReadPosRankSum=1.691;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1710,189,0 chrXIV 411943 . G C 1851 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.04;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1884,216,0 chrXIV 412116 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.692;QD=19.05;ReadPosRankSum=1.692;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1690,195,0 chrXIV 412258 . G A 2320 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.12;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2353,258,0 chrXIV 412260 . A G 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.873;QD=18.10;ReadPosRankSum=1.704;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2296,258,0 chrXIV 412273 . G A 2597 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.13;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2630,285,0 chrXIV 412313 . C T 1808 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.06;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1841,207,0 chrXIV 412369 . A T 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=3.637;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.491;QD=20.87;ReadPosRankSum=1.681;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1452,162,0 chrXIV 412406 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2038;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.36;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1156,126,0 chrXIV 413550 . C T 902 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.98;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:935,102,0 chrXIV 413686 . G T 1079 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1112,123,0 chrXIV 414010 . T C 2069 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.89;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2102,240,0 chrXIV 414025 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.35;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1852,204,0 chrXIV 414772 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.43;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1279,141,0 chrXIV 415654 . A T 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=6.8968;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.323;QD=22.37;ReadPosRankSum=2.298;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1487,162,0 chrXIV 415788 . A G 674 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=14.65;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:707,78,0 chrXIV 415793 . A T 575 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=12.78;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:608,69,0 chrXIV 415818 . G A 650 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=12.75;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:75:683,75,0 chrXIV 415844 . A G 686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;MQRankSum=-1.668;QD=12.70;ReadPosRankSum=1.668;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:81:719,81,0 chrXIV 415849 . G A 684 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=12.91;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:717,78,0 chrXIV 415877 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.20;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1036,117,0 chrXIV 416164 . T C 598 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.29;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:631,72,0 chrXIV 416179 . T C 638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=32;Dels=0.00;FS=5.883;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-0.280;QD=19.94;ReadPosRankSum=1.621;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,30:32:78:671,78,0 chrXIV 416620 . T G 769 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.09;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:802,93,0 chrXIV 416832 . G T 1484 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.50;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1517,168,0 chrXIV 416991 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.76;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1467,171,0 chrXIV 417156 . T A 1075 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.67;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1108,120,0 chrXIV 417400 . T A 1136 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.21;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1169,129,0 chrXIV 417421 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.90;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1081,120,0 chrXIV 417439 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=17.33;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:986,108,0 chrXIV 417610 . G C 716 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:749,84,0 chrXIV 417659 . G A 660 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.29;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:693,84,0 chrXIV 417758 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.74;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1729,189,0 chrXIV 418012 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=3.480;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.688;QD=18.54;ReadPosRankSum=1.555;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1498,168,0 chrXIV 418066 . A G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.429;QD=15.35;ReadPosRankSum=1.646;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1276,147,0 chrXIV 418123 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.075;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.280;QD=17.49;ReadPosRankSum=1.694;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1642,186,0 chrXIV 418291 . A G 1188 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.56;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1221,141,0 chrXIV 418300 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.12;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1321,150,0 chrXIV 418324 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.19;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1270,141,0 chrXIV 418437 . G A 1304 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.18;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1337,147,0 chrXIV 418511 . T C 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=84;Dels=0.00;FS=4.719;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=0.313;QD=15.33;ReadPosRankSum=1.690;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1321,147,0 chrXIV 418542 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=14.38;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1327,144,0 chrXIV 418565 . T C 1036 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=13.28;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1069,126,0 chrXIV 418723 . T A 739 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=15.40;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:772,87,0 chrXIV 418738 . G A 764 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.61;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:797,90,0 chrXIV 418767 . G A 555 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=12.33;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:66:588,66,0 chrXIV 418776 . G A 669 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=14.23;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:78:702,78,0 chrXIV 419029 . T C 1227 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.54;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1260,141,0 chrXIV 419038 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=23.78;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1127,123,0 chrXIV 419161 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.17;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1049,114,0 chrXIV 419170 . T C 998 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.96;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1031,114,0 chrXIV 419205 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.02;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1134,126,0 chrXIV 419224 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.96;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:966,111,0 chrXIV 419323 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.56;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:981,108,0 chrXIV 419479 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.10;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1779,207,0 chrXIV 420029 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.14;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1682,183,0 chrXIV 420063 . T C 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.970;QD=21.56;ReadPosRankSum=-0.576;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:2,73:77:99:1693,179,0 chrXIV 420094 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.41;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1532,171,0 chrXIV 420283 . C G 1137 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.34;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1170,138,0 chrXIV 420490 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.89;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1261,147,0 chrXIV 420944 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.29;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1593,180,0 chrXIV 421631 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.23;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1549,177,0 chrXIV 421772 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.17;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1701,189,0 chrXIV 422213 . T A 1739 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.90;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1772,195,0 chrXIV 422216 . A T 1661 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.05;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1694,195,0 chrXIV 422360 . T G 901 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=15.81;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:934,108,0 chrXIV 422369 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=16.25;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1057,120,0 chrXIV 422402 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=16.11;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1193,135,0 chrXIV 422411 . A G 1321 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=16.51;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1354,153,0 chrXIV 422528 . A T 1440 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.73;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1473,165,0 chrXIV 422665 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.16;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1086,123,0 chrXIV 422978 . A G 1397 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.54;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1430,165,0 chrXIV 423011 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.68;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1501,165,0 chrXIV 423035 . C A 1419 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.18;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1452,156,0 chrXIV 423266 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.16;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1050,114,0 chrXIV 423311 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.65;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1035,117,0 chrXIV 423792 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.14;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2136,237,0 chrXIV 424297 . T C 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.072;QD=19.56;ReadPosRankSum=1.567;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1265,150,0 chrXIV 424396 . T G 1742 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.93;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1775,204,0 chrXIV 424418 . T C 1695 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.42;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1728,201,0 chrXIV 425075 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.78;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2028,222,0 chrXIV 425369 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=91;Dels=0.00;FS=6.273;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.070;QD=19.09;ReadPosRankSum=2.394;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:2,86:91:99:1770,198,0 chrXIV 425456 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.000;QD=21.14;ReadPosRankSum=1.683;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1534,174,0 chrXIV 425507 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.29;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1651,183,0 chrXIV 425774 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.5323;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.67;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1881,210,0 chrXIV 425816 . G A 2245 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.23;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2278,252,0 chrXIV 425890 . A G 2560 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.16;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2593,285,0 chrXIV 425948 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.60;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1652,180,0 chrXIV 426089 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.92;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2159,240,0 chrXIV 426161 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.5152;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.98;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2026,234,0 chrXIV 426226 . A T 2427 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.0346;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.42;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2460,282,0 chrXIV 426290 . A G 2486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=114;Dels=0.00;FS=3.541;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.609;QD=21.81;ReadPosRankSum=1.426;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2519,282,0 chrXIV 426413 . A C 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=93;Dels=0.00;FS=2.837;HaplotypeScore=11.6161;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.364;QD=18.25;ReadPosRankSum=2.397;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1730,198,0 chrXIV 426473 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.27;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:993,114,0 chrXIV 426629 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=17.49;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1240,141,0 chrXIV 426647 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.70;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1275,141,0 chrXIV 426745 . C G 932 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.26;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:965,111,0 chrXIV 426977 . C A 370 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:403,45,0 chrXIV 427020 . A T 141.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.226;DP=24;Dels=0.00;FS=8.846;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-1.432;QD=5.88;ReadPosRankSum=1.583;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,23:24:21:174,21,0 chrXIV 427042 . C G 1101 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.47;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1134,129,0 chrXIV 427089 . A T 1825 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.33;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1858,201,0 chrXIV 427278 . A G 737 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.75;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:770,90,0 chrXIV 427279 . A G 728 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.33;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:761,84,0 chrXIV 427333 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0013;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.41;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1380,159,0 chrXIV 427388 . C T 2477 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.37;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2510,276,0 chrXIV 427451 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.30;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2040,240,0 chrXIV 427601 . T G 2093 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.80;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2126,240,0 chrXIV 427654 . C T 2476 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.16;SB=-1.421e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2509,273,0 chrXIV 427709 . T C 3284.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.578;DP=172;Dels=0.00;FS=5.898;HaplotypeScore=17.4782;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.589;QD=19.09;ReadPosRankSum=2.935;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:3,167:172:99:3284,372,0 chrXIV 427917 . C T 2241 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=16.48;SB=-1.280e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:2274,261,0 chrXIV 427926 . T C 2137 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.83;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2170,252,0 chrXIV 428064 . T C 2705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=156;Dels=0.00;FS=4.195;HaplotypeScore=6.0480;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.011;QD=17.34;ReadPosRankSum=1.687;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:1,154:156:99:2738,318,0 chrXIV 428076 . T C 2556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=158;Dels=0.00;FS=4.856;HaplotypeScore=12.2894;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.554;QD=16.18;ReadPosRankSum=1.688;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:1,155:158:99:2589,300,0 chrXIV 428450 . T G 1381 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.26;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1414,162,0 chrXIV 428493 . T C 1876 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4004;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=15.76;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1909,216,0 chrXIV 428582 . C G 2375 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.0340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.15;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2408,276,0 chrXIV 428659 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1689;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=16.49;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1633,183,0 chrXIV 428693 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.54;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1478,168,0 chrXIV 428763 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.84;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1330,150,0 chrXIV 428861 . T C 1946 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.27;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1979,222,0 chrXIV 428883 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=7.152;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.365;QD=19.79;ReadPosRankSum=1.700;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2190,246,0 chrXIV 428948 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.37;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1581,177,0 chrXIV 428978 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.87;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1498,168,0 chrXIV 429024 . T C 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.219;QD=17.75;ReadPosRankSum=2.371;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:2,60:63:99:1151,129,0 chrXIV 429042 . T C 1040 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.4581;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.63;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1073,120,0 chrXIV 429060 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.27;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:931,102,0 chrXIV 429773 . T G 847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=27.6940;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.011;QD=17.65;ReadPosRankSum=0.794;SB=-2.360e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:880,99,0 chrXIV 430032 . T C 1743 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.26;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1776,204,0 chrXIV 430147 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4281;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.06;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1798,204,0 chrXIV 430278 . T C 1373 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.81;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1406,162,0 chrXIV 430349 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.22;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1673,186,0 chrXIV 430455 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.64;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1284,147,0 chrXIV 430741 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.51;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1469,168,0 chrXIV 430758 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.33;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1386,159,0 chrXIV 430923 . T A 2285 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=108;Dels=0.00;FS=2.955;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.285;QD=21.16;ReadPosRankSum=2.267;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:2318,264,0 chrXIV 431004 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.05;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2338,252,0 chrXIV 431058 . A G 1627 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.92;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1660,189,0 chrXIV 431063 . T C 1486 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=18.12;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1519,180,0 chrXIV 431072 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.16;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1268,141,0 chrXIV 431214 . T C 1807 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.51;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1840,216,0 chrXIV 431586 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.55;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1266,138,0 chrXIV 431643 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.07;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1679,195,0 chrXIV 431961 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.198;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.247;QD=19.64;ReadPosRankSum=2.384;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1526,174,0 chrXIV 432036 . T C 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.102;QD=19.62;ReadPosRankSum=1.569;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1701,198,0 chrXIV 432357 . T C 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.540;QD=22.16;ReadPosRankSum=1.694;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2050,237,0 chrXIV 432400 . A T 1567 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1600,174,0 chrXIV 433148 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.83;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1728,192,0 chrXIV 433269 . T C 1147 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.85;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1180,135,0 chrXIV 433271 . G A 1218 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.56;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1251,132,0 chrXIV 433278 . T C 1011 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=2.627;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.026;QD=21.06;ReadPosRankSum=2.348;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1044,120,0 chrXIV 433431 . A T 2370 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.346;QD=18.23;ReadPosRankSum=1.679;SB=-1.401e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2403,270,0 chrXIV 433446 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.12;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2099,243,0 chrXIV 433506 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.81;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1598,177,0 chrXIV 433629 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.12;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1043,120,0 chrXIV 433631 . C G 1066 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.77;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1099,120,0 chrXIV 433680 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=17.87;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1141,126,0 chrXIV 433706 . T A 1207 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.47;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1240,138,0 chrXIV 434046 . T G 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.104;QD=21.04;ReadPosRankSum=1.690;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1779,204,0 chrXIV 434340 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.6504;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.02;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1599,180,0 chrXIV 434346 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.6332;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=16.36;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1538,174,0 chrXIV 434619 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.01;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1954,225,0 chrXIV 435082 . T C 2245 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4185;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.87;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2278,258,0 chrXIV 435509 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.78;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1633,177,0 chrXIV 435604 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.37;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1544,177,0 chrXIV 435739 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.86;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1533,177,0 chrXIV 435841 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.78;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1384,159,0 chrXIV 435886 . G T 1042 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.61;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1075,123,0 chrXIV 435955 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1178,132,0 chrXIV 436440 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.28;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1189,132,0 chrXIV 436441 . A G 1105 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.73;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1138,129,0 chrXIV 436534 . A G 844 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=16.88;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:877,99,0 chrXIV 436636 . G A 1360 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.61;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1393,153,0 chrXIV 436888 . A C 1369 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.06;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1402,159,0 chrXIV 436906 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.28;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1276,147,0 chrXIV 436918 . C T 1366 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.46;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1399,156,0 chrXIV 437003 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.53;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1734,189,0 chrXIV 437116 . T C 1917 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.78;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1950,219,0 chrXIV 437153 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.4225;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.69;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1827,207,0 chrXIV 437345 . T A 1501 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=18.76;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1534,171,0 chrXIV 437349 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.04;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1461,156,0 chrXIV 437370 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.90;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1356,159,0 chrXIV 437395 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=70;Dels=0.04;FS=6.929;HaplotypeScore=12.1520;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.066;QD=17.03;ReadPosRankSum=2.151;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:99:1225,138,0 chrXIV 437551 . C T 752 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;QD=10.16;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:90:785,90,0 chrXIV 437581 . G A 762 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=10.16;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:90:795,90,0 chrXIV 437589 . C T 690 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=10.45;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:723,78,0 chrXIV 437591 . A G 631 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=9.56;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:78:664,78,0 chrXIV 437599 . A G 557 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=8.31;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:69:590,69,0 chrXIV 437882 . T C 2215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.866;DP=126;Dels=0.00;FS=7.549;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.223;QD=17.58;ReadPosRankSum=4.050;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:6,120:126:99:2248,258,0 chrXIV 437885 . T C 2155 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.20;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2188,246,0 chrXIV 437942 . A G 2453 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=17.78;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2486,285,0 chrXIV 438050 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.71;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1373,156,0 chrXIV 438155 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.02;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1395,156,0 chrXIV 438374 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1837,210,0 chrXIV 438708 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.88;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1298,153,0 chrXIV 439125 . A G 1907 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1940,216,0 chrXIV 439449 . A T 1541 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.05;FS=0.000;HaplotypeScore=58.3491;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=18.57;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1574,183,0 chrXIV 439647 . A G 1283 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.21;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1316,153,0 chrXIV 440295 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1976,219,0 chrXIV 441069 . T G 930 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.22;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:963,111,0 chrXIV 441185 . T G 994 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=16.57;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1027,114,0 chrXIV 441200 . A T 1914 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.40;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1947,213,0 chrXIV 441233 . T G 2247 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.5009;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=16.64;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2280,261,0 chrXIV 441408 . A G 1348 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.04;FS=0.000;HaplotypeScore=7.9856;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.82;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1381,159,0 chrXIV 441745 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.1056;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=13.89;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1505,177,0 chrXIV 441915 . T C 1383 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=4.004;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.433;QD=15.72;ReadPosRankSum=1.693;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1416,162,0 chrXIV 441996 . T C 1351 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.26;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1384,159,0 chrXIV 442265 . G A 2168 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.05;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2201,243,0 chrXIV 442648 . T A 1970 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4706;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.50;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2003,219,0 chrXIV 442653 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4706;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.30;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1808,207,0 chrXIV 442660 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.11;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1753,192,0 chrXIV 442716 . C T 826 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=14.24;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:859,96,0 chrXIV 442767 . G A 1830 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=24.08;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1863,204,0 chrXIV 442805 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=22.97;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1664,189,0 chrXIV 442838 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=16.53;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1190,132,0 chrXIV 442846 . C T 923 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=13.38;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:956,111,0 chrXIV 442868 . T C 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=84;Dels=0.00;FS=2.735;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;MQRankSum=-0.549;QD=16.02;ReadPosRankSum=2.391;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1379,162,0 chrXIV 442912 . A G 1962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.732;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.765;QD=17.68;ReadPosRankSum=1.701;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1995,228,0 chrXIV 442949 . G T 1725 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.97;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1758,195,0 chrXIV 442970 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.24;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1602,183,0 chrXIV 443131 . C A 175.03 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=3.65;SB=-2.504e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:24:208,24,0 chrXIV 443148 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=18.71;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1137,129,0 chrXIV 443160 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=19.72;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1394,153,0 chrXIV 443191 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=17.84;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1371,156,0 chrXIV 443303 . G A 531 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=14.75;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:564,63,0 chrXIV 443779 . A G 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=3.087;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.069;QD=19.95;ReadPosRankSum=2.359;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1130,126,0 chrXIV 443882 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=21.34;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1463,165,0 chrXIV 443895 . A C 1515 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.20;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1548,180,0 chrXIV 443919 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.82;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1209,132,0 chrXIV 443920 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.17;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1214,132,0 chrXIV 444025 . T C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.064;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=19.59;ReadPosRankSum=1.689;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1639,183,0 chrXIV 444424 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.32;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1374,153,0 chrXIV 444614 . A C 998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.476;QD=18.48;ReadPosRankSum=1.668;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1031,117,0 chrXIV 444798 . G C 1235 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.15;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1268,141,0 chrXIV 444935 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.87;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1565,171,0 chrXIV 445056 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.17;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1123,132,0 chrXIV 445584 . T A 2683 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.80;SB=-1.650e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2716,294,0 chrXIV 445698 . A G 2694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=6.349;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.764;QD=22.08;ReadPosRankSum=2.409;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2727,303,0 chrXIV 445832 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=4.692;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.207;QD=19.36;ReadPosRankSum=1.637;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2143,243,0 chrXIV 445986 . A G 2333 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.83;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2366,267,0 chrXIV 446017 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.44;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2132,234,0 chrXIV 446044 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.09;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1755,204,0 chrXIV 446076 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.14;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1456,165,0 chrXIV 446331 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.29;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1588,174,0 chrXIV 446337 . G A 1312 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=16.20;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1345,153,0 chrXIV 446584 . G C 1470 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6471;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1503,174,0 chrXIV 446677 . G C 1637 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.19;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1670,192,0 chrXIV 446682 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.742;QD=16.99;ReadPosRankSum=1.694;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,90:93:99:1613,180,0 chrXIV 446766 . T A 1790 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.95;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1823,204,0 chrXIV 447382 . G T 3088 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.60;SB=-1.473e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3121,336,0 chrXIV 447433 . A G 2567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=138;Dels=0.00;FS=2.811;HaplotypeScore=7.1718;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.241;QD=18.60;ReadPosRankSum=2.396;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:2600,300,0 chrXIV 448393 . C A 1362 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.03;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1395,153,0 chrXIV 448411 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.48;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1260,138,0 chrXIV 448642 . G A 934 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.30;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:967,108,0 chrXIV 448975 . C G 2383 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=23.36;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2416,288,0 chrXIV 449333 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3092;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=18.49;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2307,249,0 chrXIV 449362 . G A 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.397;QD=18.51;ReadPosRankSum=0.469;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1810,182,0 chrXIV 449371 . C T 1666 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.51;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1699,186,0 chrXIV 449443 . T C 1235 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=15.83;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1268,147,0 chrXIV 449451 . T A 1446 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=19.03;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1479,159,0 chrXIV 449452 . T A 1443 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.507;QD=18.74;ReadPosRankSum=1.687;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1476,159,0 chrXIV 449521 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.07;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1349,147,0 chrXIV 449542 . T A 1294 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.21;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1327,147,0 chrXIV 449640 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.92;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1208,138,0 chrXIV 449677 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=46.7620;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.49;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1240,141,0 chrXIV 449850 . G A 1719 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.96;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1752,192,0 chrXIV 450291 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.169;QD=21.69;ReadPosRankSum=2.386;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1703,192,0 chrXIV 450515 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2480;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.94;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1688,180,0 chrXIV 450550 . C G 1697 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.70;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1730,195,0 chrXIV 450577 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.49;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1645,180,0 chrXIV 450844 . G A 1141 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1174,129,0 chrXIV 450995 . C A 2095 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.29;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2128,228,0 chrXIV 451909 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1507,171,0 chrXIV 452114 . A G 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.038;QD=19.89;ReadPosRankSum=1.578;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:928,105,0 chrXIV 452274 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.99;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1310,144,0 chrXIV 452401 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.59;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1779,204,0 chrXIV 453168 . C G 1487 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.24;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1520,171,0 chrXIV 453313 . T C 2680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=125;Dels=0.00;FS=5.313;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.276;QD=21.44;ReadPosRankSum=2.943;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2713,309,0 chrXIV 453664 . A C 2374 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=19.2935;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.830;QD=20.47;ReadPosRankSum=2.366;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:3,110:116:99:2407,276,0 chrXIV 453766 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3742;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=15.85;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1777,204,0 chrXIV 453937 . C T 2345 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.32;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2378,261,0 chrXIV 454372 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4972;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.11;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1487,162,0 chrXIV 454378 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.27;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1531,168,0 chrXIV 454997 . C T 1657 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.80;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1690,186,0 chrXIV 455941 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.62;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2211,252,0 chrXIV 455969 . G A 2352 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.93;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2385,264,0 chrXIV 456007 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.46;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1921,210,0 chrXIV 456086 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.74;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1346,150,0 chrXIV 456336 . A T 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.405;QD=16.04;ReadPosRankSum=1.635;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1781,198,0 chrXIV 456352 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1227;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=17.89;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1894,210,0 chrXIV 456413 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.36;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2232,264,0 chrXIV 456532 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.81;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1677,186,0 chrXIV 457485 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.57;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1166,129,0 chrXIV 458177 . A G 2171 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.85;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2204,252,0 chrXIV 458514 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.13;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:924,105,0 chrXIV 459023 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:90:819,90,0 chrXIV 459287 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1485,171,0 chrXIV 459918 . C G 1148 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1181,132,0 chrXIV 459920 . G T 1156 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.95;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1189,129,0 chrXIV 460325 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.04;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1596,183,0 chrXIV 460919 . C G 1149 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.45;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1182,132,0 chrXIV 460957 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.35;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1368,156,0 chrXIV 461091 . C G 1302 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.03;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1335,153,0 chrXIV 461244 . G A 612 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.00;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:645,72,0 chrXIV 461267 . G A 574 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.39;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:607,66,0 chrXIV 461618 . T A 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.082;QD=24.52;ReadPosRankSum=1.691;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2117,228,0 chrXIV 461705 . A G 1094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.119;QD=18.86;ReadPosRankSum=1.553;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1127,132,0 chrXIV 461930 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.31;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1193,138,0 chrXIV 461994 . A T 1293 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.59;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1326,147,0 chrXIV 462327 . C A 1865 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.22;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1898,204,0 chrXIV 462632 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1501,165,0 chrXIV 462788 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.84;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2077,222,0 chrXIV 462821 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.71;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1963,225,0 chrXIV 462839 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.76;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2009,228,0 chrXIV 462893 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.968;QD=19.07;ReadPosRankSum=1.681;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1330,153,0 chrXIV 462944 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.60;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1610,177,0 chrXIV 463302 . T C 1239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.572;QD=19.06;ReadPosRankSum=1.679;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1272,144,0 chrXIV 463775 . C T 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=58;Dels=0.00;FS=3.707;HaplotypeScore=2.3537;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.834;QD=23.34;ReadPosRankSum=-1.668;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,54:58:99:1387,134,0 chrXIV 463992 . C G 1034 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1067,123,0 chrXIV 464849 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.44;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1791,204,0 chrXIV 465005 . C T 2496 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.3923;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.33;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2529,273,0 chrXIV 465704 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.70;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:79:99:1668,195,0 chrXIV 465982 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.33;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1599,183,0 chrXIV 466168 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.796;QD=22.96;ReadPosRankSum=1.639;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1732,195,0 chrXIV 466221 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.58;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1587,174,0 chrXIV 466265 . A T 1800 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.69;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1833,201,0 chrXIV 466279 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.11;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1715,192,0 chrXIV 466480 . T A 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=100;Dels=0.00;FS=2.942;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.480;QD=18.89;ReadPosRankSum=2.376;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1922,219,0 chrXIV 466519 . C A 1902 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.2778;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.02;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1935,222,0 chrXIV 466584 . G A 2162 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.20;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2195,237,0 chrXIV 466623 . C T 2113 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.21;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2146,234,0 chrXIV 466878 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1987,228,0 chrXIV 467219 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.36;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1665,189,0 chrXIV 467514 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.47;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1455,165,0 chrXIV 467673 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.53;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1752,204,0 chrXIV 468108 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.24;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2072,240,0 chrXIV 468438 . A G 1224 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.10;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1257,138,0 chrXIV 468483 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.94;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1309,144,0 chrXIV 468488 . A G 1252 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.56;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1285,144,0 chrXIV 468687 . G T 865 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:898,99,0 chrXIV 468807 . C A 1543 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.73;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1576,174,0 chrXIV 468840 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.38;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1551,174,0 chrXIV 468900 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.29;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1413,159,0 chrXIV 469560 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1337,156,0 chrXIV 469673 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1087,123,0 chrXIV 470301 . C T 1072 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1105,120,0 chrXIV 470587 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.70;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1259,138,0 chrXIV 472054 . C T 1713 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.68;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1746,192,0 chrXIV 472094 . A G 1458 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.626;QD=20.25;ReadPosRankSum=1.684;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1491,174,0 chrXIV 472546 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.33;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1774,195,0 chrXIV 472579 . G T 26.19 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.154;DP=88;Dels=0.00;FS=6.148;HaplotypeScore=9.8291;MLEAC=1;MLEAF=0.500;MQ=48.00;MQ0=2;MQRankSum=1.342;QD=0.30;ReadPosRankSum=-4.106;SB=-8.018e+01 GT:AD:DP:GQ:PL 0/1:81,7:88:11:56,0,11 chrXIV 472584 . G C 18.82 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=3.536;HaplotypeScore=4.6024;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=2;MQRankSum=0.724;QD=0.23;ReadPosRankSum=1.688;SB=-8.908e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:6:50,6,0 chrXIV 473146 . G C 2029 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.96;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2062,240,0 chrXIV 473303 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.15;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1175,132,0 chrXIV 473321 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.46;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1106,126,0 chrXIV 473357 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.62;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1053,120,0 chrXIV 473375 . G A 881 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.35;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:914,105,0 chrXIV 473389 . G C 1071 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=19.12;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1104,126,0 chrXIV 473507 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.45;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1706,189,0 chrXIV 473512 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.50;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1476,168,0 chrXIV 473603 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.14;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1386,153,0 chrXIV 473648 . T C 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=1.675;QD=21.54;ReadPosRankSum=1.675;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1347,159,0 chrXIV 473723 . G C 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DP=62;Dels=0.00;FS=4.429;HaplotypeScore=7.4109;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=1.619;QD=18.85;ReadPosRankSum=1.221;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1202,138,0 chrXIV 473725 . T C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.1995;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.568;QD=18.36;ReadPosRankSum=2.058;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1208,141,0 chrXIV 473855 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.90;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,135,0 chrXIV 473894 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.8316;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.47;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1220,135,0 chrXIV 473948 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1649,189,0 chrXIV 474098 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.72;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1624,189,0 chrXIV 474101 . T C 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.672;QD=19.58;ReadPosRankSum=1.691;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1697,192,0 chrXIV 474329 . T A 1608 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.73;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1641,180,0 chrXIV 474540 . T G 2136 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.72;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2169,252,0 chrXIV 474589 . C G 1543 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=16.96;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1576,177,0 chrXIV 474779 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1803,207,0 chrXIV 474941 . T C 1570 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.87;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1603,189,0 chrXIV 475057 . C G 1691 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.89;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1724,198,0 chrXIV 475211 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.90;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1267,144,0 chrXIV 475424 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=3.093;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.756;QD=22.42;ReadPosRankSum=2.359;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:2,52:55:99:1266,141,0 chrXIV 475536 . G A 746 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:779,84,0 chrXIV 476219 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.12;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1421,159,0 chrXIV 476497 . G A 2060 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.73;SB=-1.417e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2093,237,0 chrXIV 476599 . A C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.736;QD=17.95;ReadPosRankSum=1.542;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1343,150,0 chrXIV 476731 . A G 838 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=14.70;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:871,99,0 chrXIV 476888 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=11.15;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,59:60:81:702,81,0 chrXIV 477349 . C T 2676 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.9261;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.68;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2709,300,0 chrXIV 477388 . A G 2362 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.19;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2395,267,0 chrXIV 477496 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.68;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1668,186,0 chrXIV 477505 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=14.96;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1484,165,0 chrXIV 477523 . G T 1254 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=15.48;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1287,141,0 chrXIV 477610 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=18.44;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1582,177,0 chrXIV 477622 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.68;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1854,204,0 chrXIV 477705 . C T 2518 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.14;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2551,282,0 chrXIV 477742 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.29;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2468,279,0 chrXIV 477931 . C A 1116 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.24;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1149,126,0 chrXIV 478041 . T C 2302 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.2093;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.19;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2335,261,0 chrXIV 478186 . A T 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.397;QD=21.53;ReadPosRankSum=1.649;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1820,201,0 chrXIV 478376 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=15.37;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1155,138,0 chrXIV 479345 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.52;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,49:50:96:859,96,0 chrXIV 479462 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.476;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=29.9929;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.256;QD=0.61;ReadPosRankSum=2.232;SB=-1.755e+00 GT:AD:DP:GQ:PL 1/1:32,2:34:6:52,6,0 chrXIV 479609 . T C 1196 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=23.45;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1229,138,0 chrXIV 479875 . T C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;MQRankSum=0.000;QD=14.85;ReadPosRankSum=1.650;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1295,153,0 chrXIV 479932 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=13.89;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:1561,171,0 chrXIV 480082 . A T 2105 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.26;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2138,240,0 chrXIV 480118 . G T 1300 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.31;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1333,150,0 chrXIV 480343 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.5742;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.97;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2150,237,0 chrXIV 480401 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1908,207,0 chrXIV 480487 . A C 1148 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.13;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1181,135,0 chrXIV 480527 . A C 1115 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.28;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1148,132,0 chrXIV 480573 . T C 977 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.029;QD=16.56;ReadPosRankSum=1.615;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1010,120,0 chrXIV 480622 . C A 1554 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.92;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1587,177,0 chrXIV 480652 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.16;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2022,219,0 chrXIV 480718 . G C 1590 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1623,183,0 chrXIV 480883 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8146;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=16.87;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1163,132,0 chrXIV 481081 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.22;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1988,216,0 chrXIV 481383 . A T 1291 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.45;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1324,150,0 chrXIV 481576 . T C 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=3.900;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.647;QD=21.27;ReadPosRankSum=1.219;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1777,198,0 chrXIV 481654 . A G 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.027;QD=16.34;ReadPosRankSum=1.626;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1095,126,0 chrXIV 481825 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=16.60;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:996,111,0 chrXIV 481845 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.78;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1082,117,0 chrXIV 483093 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.46;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1750,192,0 chrXIV 483098 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.85;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1388,165,0 chrXIV 483386 . G T 1286 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.48;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1319,144,0 chrXIV 483741 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1759,201,0 chrXIV 483894 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.16;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1662,198,0 chrXIV 483951 . C T 1660 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.49;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1693,186,0 chrXIV 483985 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.60;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1298,147,0 chrXIV 484017 . C A 1389 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.56;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1422,159,0 chrXIV 484452 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.23;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1629,183,0 chrXIV 484786 . C A 2193 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1816;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.94;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2226,264,0 chrXIV 484851 . A G 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=3.596;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.228;QD=17.99;ReadPosRankSum=1.698;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1904,225,0 chrXIV 484869 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=104;Dels=0.00;FS=9.290;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.211;QD=17.70;ReadPosRankSum=3.321;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:4,100:104:99:1874,213,0 chrXIV 484904 . A G 2246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=132;Dels=0.00;FS=2.979;HaplotypeScore=9.8970;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-2.412;QD=17.02;ReadPosRankSum=2.412;SB=-1.481e+03 GT:AD:DP:GQ:PL 1/1:2,130:132:99:2279,258,0 chrXIV 485076 . T C 2378 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.15;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2411,273,0 chrXIV 485154 . C T 1477 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.58;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1510,174,0 chrXIV 485289 . G A 2654 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.95;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2687,291,0 chrXIV 485525 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.947;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.163;QD=21.32;ReadPosRankSum=1.577;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1483,165,0 chrXIV 485799 . A G 2027 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2060,231,0 chrXIV 485870 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1571,177,0 chrXIV 485972 . T C 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4009;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.428;QD=19.69;ReadPosRankSum=0.857;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1825,213,0 chrXIV 486008 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.63;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1742,192,0 chrXIV 486092 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.652;QD=19.91;ReadPosRankSum=1.695;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1885,219,0 chrXIV 486859 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.7692;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.42;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1889,201,0 chrXIV 487177 . T G 1890 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.48;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1923,219,0 chrXIV 487214 . T C 2218 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.279;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.2359;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.117;QD=20.16;ReadPosRankSum=-1.117;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:2,106:110:99:2251,239,0 chrXIV 487250 . G C 2395 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.38;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2428,273,0 chrXIV 487393 . C G 1888 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=14.6183;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.51;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1921,216,0 chrXIV 487663 . T C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.104;DP=114;Dels=0.00;FS=7.581;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.314;QD=20.89;ReadPosRankSum=4.027;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:6,107:114:99:2414,270,0 chrXIV 487892 . G T 2063 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.12;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2096,243,0 chrXIV 487935 . C T 2598 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.78;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2631,294,0 chrXIV 488208 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.83;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1917,216,0 chrXIV 488281 . C A 2311 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.40;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2344,258,0 chrXIV 488594 . A G 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;MQRankSum=-1.170;QD=17.41;ReadPosRankSum=1.592;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1356,156,0 chrXIV 488598 . G C 1323 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.13;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1356,153,0 chrXIV 488653 . A G 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.602;QD=16.17;ReadPosRankSum=1.696;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1569,183,0 chrXIV 488724 . A G 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.455;QD=15.58;ReadPosRankSum=1.663;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:812,93,0 chrXIV 488736 . T A 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=3.282;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.682;QD=13.94;ReadPosRankSum=1.680;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:967,108,0 chrXIV 488759 . G C 1293 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.24;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1326,147,0 chrXIV 489067 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.07;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1902,210,0 chrXIV 489385 . A G 1835 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=103;Dels=0.00;FS=5.620;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-0.422;QD=17.82;ReadPosRankSum=2.932;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:3,100:103:99:1868,216,0 chrXIV 489386 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.02;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1835,207,0 chrXIV 489397 . G T 1595 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=15.79;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1628,183,0 chrXIV 489468 . G C 1813 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.60;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1846,210,0 chrXIV 489631 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=94;Dels=0.00;FS=3.931;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.460;QD=20.16;ReadPosRankSum=1.693;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,88:94:99:1928,213,0 chrXIV 489759 . A G 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.829;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=1.032;QD=19.12;ReadPosRankSum=1.697;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1926,216,0 chrXIV 489765 . A G 1849 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.78;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1882,219,0 chrXIV 490190 . T A 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DP=123;Dels=0.00;FS=10.757;HaplotypeScore=23.9712;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.727;QD=15.07;ReadPosRankSum=0.595;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:1887,216,0 chrXIV 490355 . T A 1276 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.00;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1309,147,0 chrXIV 491097 . A G 2146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.636;DP=122;Dels=0.00;FS=2.577;HaplotypeScore=10.2433;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.364;QD=17.59;ReadPosRankSum=2.941;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:3,117:122:99:2179,243,0 chrXIV 491107 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.24;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2204,243,0 chrXIV 491219 . C G 2237 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.64;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,116:120:99:2270,261,0 chrXIV 491237 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2109;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.82;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1993,216,0 chrXIV 491255 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.24;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1847,210,0 chrXIV 491381 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.24;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2361,267,0 chrXIV 491385 . A C 2121 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=17.97;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2154,252,0 chrXIV 491900 . T C 1445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.219;QD=16.42;ReadPosRankSum=1.692;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1478,168,0 chrXIV 491913 . T G 1455 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=15.99;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1488,168,0 chrXIV 492185 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.49;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1529,174,0 chrXIV 492190 . G C 1365 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.07;SB=-1.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1398,159,0 chrXIV 492375 . A G 2276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.938;DP=113;Dels=0.00;FS=14.433;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.938;QD=20.14;ReadPosRankSum=2.884;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2309,273,0 chrXIV 492410 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.53;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2218,243,0 chrXIV 492836 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=15.59;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1140,126,0 chrXIV 492841 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=14.93;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1168,129,0 chrXIV 492875 . G A 1615 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1648,183,0 chrXIV 493300 . G A 732 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=26.14;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:84:765,84,0 chrXIV 493333 . T G 422 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.21;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:455,51,0 chrXIV 493533 . G A 867 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.85;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:900,99,0 chrXIV 493553 . A G 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.489;QD=18.33;ReadPosRankSum=2.847;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:3,43:46:99:876,102,0 chrXIV 494028 . T C 1029 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.06;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1062,120,0 chrXIV 494033 . T C 861 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=17.94;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:894,102,0 chrXIV 494598 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.75;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:83:99:1838,204,0 chrXIV 494676 . T A 1220 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.48;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1253,138,0 chrXIV 494733 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=16.56;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1010,114,0 chrXIV 494769 . G T 1141 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.02;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1174,129,0 chrXIV 495101 . A T 1661 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.77;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1694,189,0 chrXIV 495255 . T A 983 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=16.11;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1016,117,0 chrXIV 495396 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.14;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1703,186,0 chrXIV 495494 . A G 836 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=13.70;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:869,96,0 chrXIV 495918 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.18;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1529,168,0 chrXIV 495923 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.01;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1360,153,0 chrXIV 496455 . T C 1857 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.76;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1890,216,0 chrXIV 496505 . G C 2909 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.2526;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.77;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,154:155:99:2942,339,0 chrXIV 496676 . G C 2612 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.06;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2645,303,0 chrXIV 496694 . T C 1798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.601;QD=18.16;ReadPosRankSum=1.697;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1831,210,0 chrXIV 496736 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=14.97;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1350,150,0 chrXIV 496755 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=14.11;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1077,120,0 chrXIV 496792 . T G 1269 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=14.76;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1302,147,0 chrXIV 496825 . T C 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.815;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.178;QD=18.30;ReadPosRankSum=1.697;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1863,219,0 chrXIV 496850 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=16.96;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1950,225,0 chrXIV 497099 . C T 2291 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=14.4795;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.02;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2324,255,0 chrXIV 497303 . C G 1849 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.28;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1882,219,0 chrXIV 497369 . G A 1757 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.6876;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.67;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1790,198,0 chrXIV 497481 . T C 1276 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=84;Dels=0.00;FS=4.825;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.760;QD=15.19;ReadPosRankSum=1.648;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1309,147,0 chrXIV 498032 . A G 2741 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=5.146;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.902;QD=22.47;ReadPosRankSum=1.703;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2774,318,0 chrXIV 498514 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.12;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1744,198,0 chrXIV 498539 . T C 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.299;QD=22.15;ReadPosRankSum=1.684;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1628,192,0 chrXIV 498573 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1136,126,0 chrXIV 498924 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.19;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1368,153,0 chrXIV 499006 . T A 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.111;QD=18.82;ReadPosRankSum=1.659;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:955,105,0 chrXIV 499075 . A T 12.41 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;DP=62;Dels=0.00;FS=6.241;HaplotypeScore=95.8125;MLEAC=1;MLEAF=0.500;MQ=52.06;MQ0=0;MQRankSum=0.260;QD=0.20;ReadPosRankSum=-2.902;SB=17.85 GT:AD:DP:GQ:PL 1/1:48,3:62:6:43,6,0 chrXIV 499150 . T C 680 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.11;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:81:713,81,0 chrXIV 499164 . C T 789 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.93;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:822,90,0 chrXIV 499188 . A G 885 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.44;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:918,105,0 chrXIV 499291 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.02;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1003,114,0 chrXIV 499366 . G A 1034 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.46;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1067,117,0 chrXIV 499402 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.94;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1002,114,0 chrXIV 499579 . T C 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=88;Dels=0.00;FS=7.927;HaplotypeScore=13.3274;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;MQRankSum=0.721;QD=14.80;ReadPosRankSum=3.515;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:5,83:88:99:1335,153,0 chrXIV 499614 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.43;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1995,231,0 chrXIV 499647 . T C 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.333;QD=20.40;ReadPosRankSum=2.408;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2461,285,0 chrXIV 499656 . C T 2724 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=22.51;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2757,303,0 chrXIV 499731 . T C 1925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=88;Dels=0.00;FS=2.441;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.322;QD=21.87;ReadPosRankSum=2.920;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1958,222,0 chrXIV 500187 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.96;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2289,258,0 chrXIV 500387 . A G 1415 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.12;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1448,159,0 chrXIV 500595 . C T 1537 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=17.67;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1570,171,0 chrXIV 500597 . C A 1534 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=18.26;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1567,171,0 chrXIV 500627 . T G 1091 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=13.81;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1124,132,0 chrXIV 500652 . T A 724 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=11.68;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:757,84,0 chrXIV 500701 . T C 670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.954;DP=64;Dels=0.00;FS=9.434;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=1.539;QD=10.47;ReadPosRankSum=3.314;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:4,60:64:81:703,81,0 chrXIV 500711 . T C 919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-1.412;QD=14.14;ReadPosRankSum=1.679;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:952,108,0 chrXIV 500767 . A G 881 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=50.2584;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=14.93;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:914,108,0 chrXIV 500939 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.47;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1474,162,0 chrXIV 501214 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.11;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1466,168,0 chrXIV 501247 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.48;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1112,123,0 chrXIV 501280 . G A 676 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.78;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:709,78,0 chrXIV 501320 . C T 807 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.81;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:840,93,0 chrXIV 501361 . A G 755 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=15.73;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:788,90,0 chrXIV 501363 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=16.25;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:813,90,0 chrXIV 501452 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.62;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1047,120,0 chrXIV 501463 . C A 1187 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.2462;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.49;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1220,132,0 chrXIV 501730 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.52;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1449,159,0 chrXIV 501828 . T C 1989 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.732;QD=20.51;ReadPosRankSum=1.696;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2022,228,0 chrXIV 501910 . A T 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=117;Dels=0.00;FS=6.924;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.326;QD=20.59;ReadPosRankSum=2.387;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,115:117:99:2442,267,0 chrXIV 502322 . A G 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.627;QD=17.35;ReadPosRankSum=-0.221;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1664,195,0 chrXIV 502729 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.28;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1325,156,0 chrXIV 502885 . A G 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=0.206;QD=15.78;ReadPosRankSum=1.674;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,58:60:99:980,114,0 chrXIV 503261 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.02;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1168,132,0 chrXIV 505410 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.89;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1321,150,0 chrXIV 506324 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.77;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1832,201,0 chrXIV 506768 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.1200;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.62;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1594,174,0 chrXIV 506906 . A C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=101;Dels=0.00;FS=7.077;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.305;QD=12.50;ReadPosRankSum=2.401;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1295,147,0 chrXIV 506920 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=15.99;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1408,150,0 chrXIV 507053 . T G 1378 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.97;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1411,162,0 chrXIV 507058 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.92;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1560,165,0 chrXIV 507351 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=7.7591;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.11;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1228,135,0 chrXIV 507355 . T A 1053 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.4242;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=14.83;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1086,123,0 chrXIV 507430 . G T 915 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=18.5954;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=12.53;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:948,102,0 chrXIV 507431 . A T 909 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.337;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=19.5887;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-0.674;QD=12.45;ReadPosRankSum=1.684;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:942,102,0 chrXIV 507432 . A T 918 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.308;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=20.5803;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-1.020;QD=12.41;ReadPosRankSum=1.637;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:951,102,0 chrXIV 507433 . A C 882 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=19.5887;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=11.76;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:915,105,0 chrXIV 507570 . G T 1543 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.53;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1576,174,0 chrXIV 507597 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=15.72;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1306,144,0 chrXIV 507599 . A T 1205 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=15.65;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1238,138,0 chrXIV 507677 . T A 1945 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.91;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1978,219,0 chrXIV 508321 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.68;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1770,198,0 chrXIV 508507 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.53;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1256,138,0 chrXIV 508617 . G A 815 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=14.82;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:848,93,0 chrXIV 508645 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=15.28;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1118,129,0 chrXIV 508667 . A G 845 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=13.85;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:878,99,0 chrXIV 508743 . T C 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.604;QD=22.45;ReadPosRankSum=1.652;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:99:1021,117,0 chrXIV 508757 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=22.23;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:989,108,0 chrXIV 508768 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.36;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:951,111,0 chrXIV 509173 . C A 1416 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.14;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1449,159,0 chrXIV 509478 . C A 1192 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1225,135,0 chrXIV 509580 . G T 1028 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.72;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1061,117,0 chrXIV 510203 . A G 736 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=17.95;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:769,87,0 chrXIV 510274 . C A 1140 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;QD=17.01;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1173,129,0 chrXIV 510300 . T C 1038 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;QD=16.74;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1071,123,0 chrXIV 510362 . T A 512 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=40;Dels=0.00;FS=3.468;HaplotypeScore=5.9747;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-1.646;QD=12.80;ReadPosRankSum=0.260;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:63:545,63,0 chrXIV 510401 . A T 754 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.53;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:787,87,0 chrXIV 510459 . C T 1178 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.67;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1211,132,0 chrXIV 510479 . A G 1117 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.834;QD=20.69;ReadPosRankSum=1.668;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1150,129,0 chrXIV 510728 . G A 1320 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.37;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1353,150,0 chrXIV 510803 . A G 1783 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.476;QD=22.29;ReadPosRankSum=1.689;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1816,210,0 chrXIV 510838 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.13;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1660,195,0 chrXIV 511046 . G C 1040 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.25;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1073,123,0 chrXIV 511838 . T C 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=4.8712;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.866;QD=18.06;ReadPosRankSum=1.663;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1839,210,0 chrXIV 511916 . C T 2413 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.8459;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.49;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2446,276,0 chrXIV 512400 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.91;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1392,147,0 chrXIV 512455 . G A 822 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=48.3254;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.27;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:855,96,0 chrXIV 512530 . A T 1657 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.96;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1690,186,0 chrXIV 512534 . A G 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=9.345;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.564;QD=18.05;ReadPosRankSum=1.692;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1585,183,0 chrXIV 512617 . T C 2419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.327;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.370;QD=21.60;ReadPosRankSum=4.327;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:7,105:112:99:2452,276,0 chrXIV 512905 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.50;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2568,291,0 chrXIV 513243 . T C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.179;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.304;QD=16.59;ReadPosRankSum=1.693;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1526,171,0 chrXIV 513525 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.23;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1552,177,0 chrXIV 513783 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.19;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1530,171,0 chrXIV 513927 . A G 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.547;QD=20.24;ReadPosRankSum=1.641;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1571,177,0 chrXIV 514279 . T A 1760 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.56;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1793,201,0 chrXIV 515028 . C T 2783 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.58;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2816,315,0 chrXIV 515081 . G A 2951 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.80;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2984,327,0 chrXIV 515393 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.49;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1885,213,0 chrXIV 515474 . A T 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.211;QD=19.78;ReadPosRankSum=1.690;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1655,177,0 chrXIV 515478 . C A 1550 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.37;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1583,174,0 chrXIV 515537 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.28;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1203,138,0 chrXIV 515602 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=13.48;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:963,105,0 chrXIV 515604 . T A 935 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=13.75;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:968,108,0 chrXIV 515758 . G C 1267 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.36;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1300,150,0 chrXIV 515949 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.99;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1616,177,0 chrXIV 516034 . A G 1700 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.0056;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=16.67;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1733,198,0 chrXIV 516129 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=17.3630;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.63;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:2016,222,0 chrXIV 516282 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.44;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2220,249,0 chrXIV 516367 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.8480;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.11;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2325,258,0 chrXIV 516484 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.91;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1924,219,0 chrXIV 516536 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.14;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1788,198,0 chrXIV 516881 . A G 928 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.85;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:961,108,0 chrXIV 516960 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.91;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1300,147,0 chrXIV 517017 . T A 881 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:914,105,0 chrXIV 517069 . T C 892 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.24;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:925,105,0 chrXIV 517548 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.44;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1984,228,0 chrXIV 517606 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=4.023;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.120;QD=21.05;ReadPosRankSum=1.664;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2180,246,0 chrXIV 517634 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.39;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1909,213,0 chrXIV 517695 . A T 1374 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.0746;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.82;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1407,162,0 chrXIV 517849 . G A 580 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=7.84;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:613,69,0 chrXIV 518147 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.48;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1958,222,0 chrXIV 518162 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.87;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1782,207,0 chrXIV 518357 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.43;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2540,285,0 chrXIV 518600 . T C 1083 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.16;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1116,129,0 chrXIV 518602 . G T 1106 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.51;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1139,123,0 chrXIV 518686 . G A 1126 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.16;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1159,126,0 chrXIV 519058 . T C 1390 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=21.38;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1423,165,0 chrXIV 519077 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=20.13;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1140,126,0 chrXIV 519166 . T C 15.88 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=3.97;SB=-2.680e+01 GT:AD:DP:GQ:PL 1/1:0,4:4:6:47,6,0 chrXIV 523665 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.30;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,73:73:6:53,6,0 chrXIV 523677 . C T 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.54;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,89:90:9:81,9,0 chrXIV 523680 . A T 45.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.51;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,90:90:9:78,9,0 chrXIV 523685 . A G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.53;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,89:89:9:79,9,0 chrXIV 523686 . G A 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.53;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,89:89:9:79,9,0 chrXIV 523704 . T A 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.57;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,84:84:9:80,9,0 chrXIV 523707 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=0.59;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,84:84:9:82,9,0 chrXIV 523713 . C T 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=0.78;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,64:64:9:82,9,0 chrXIV 523719 . T C 44.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=1.275;QD=0.85;ReadPosRankSum=1.667;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,52:53:9:77,9,0 chrXIV 523722 . T C 54.97 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=1.28;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:0,43:43:9:87,9,0 chrXIV 523728 . A T 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=2.56;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:12:112,12,0 chrXIV 523731 . G A 73.51 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=1;QD=2.37;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,30:31:12:106,12,0 chrXIV 523734 . C T 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=2;QD=2.74;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,29:29:12:112,12,0 chrXIV 523924 . C T 1796.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=7.255;DP=337;Dels=0.00;FS=1.672;HaplotypeScore=24.0616;MLEAC=1;MLEAF=0.500;MQ=39.83;MQ0=0;MQRankSum=0.192;QD=5.33;ReadPosRankSum=0.048;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:222,115:337:99:1826,0,4089 chrXIV 523953 . A G 8280.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=388;Dels=0.00;FS=0.000;HaplotypeScore=11.0379;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=41;MQRankSum=-1.163;QD=21.34;ReadPosRankSum=1.632;SB=-2.581e+03 GT:AD:DP:GQ:PL 1/1:1,387:388:99:8280,933,0 chrXIV 524212 . A G 1318.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.313;DP=747;Dels=0.00;FS=6.945;HaplotypeScore=45.5182;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=75;MQRankSum=-0.798;QD=1.76;ReadPosRankSum=0.719;SB=-6.450e+02 GT:AD:DP:GQ:PL 0/1:509,236:747:99:1348,0,4675 chrXIV 524283 . C T 299.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.891;DP=345;Dels=0.00;FS=0.000;HaplotypeScore=21.5879;MLEAC=1;MLEAF=0.500;MQ=27.83;MQ0=46;MQRankSum=-1.089;QD=0.87;ReadPosRankSum=-1.903;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:272,71:345:99:329,0,3583 chrXIV 524403 . A T 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=9.59;MQ0=133;MQRankSum=0.735;QD=0.11;ReadPosRankSum=0.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,31:167:49:49,0,148 chrXIV 524470 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-4.012;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=125;MQRankSum=0.860;QD=0.06;ReadPosRankSum=2.004;SB=1.34 GT:AD:DP:GQ:PL 1/1:92,112:207:6:43,6,0 chrXIV 525093 . G T 848 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=13.68;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:881,96,0 chrXIV 525096 . A G 889 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=14.11;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:922,102,0 chrXIV 525101 . C T 1033 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=0;QD=13.59;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1066,114,0 chrXIV 525157 . A G 2889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=146;Dels=0.00;FS=3.101;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=0.012;QD=19.79;ReadPosRankSum=1.708;SB=-1.769e+03 GT:AD:DP:GQ:PL 1/1:1,144:146:99:2922,342,0 chrXIV 525249 . C A 1769 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=20.10;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1802,198,0 chrXIV 525274 . A G 821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=1.356;QD=17.85;ReadPosRankSum=1.657;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:96:854,96,0 chrXIV 525379 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=15.86;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1048,117,0 chrXIV 525472 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=20.17;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2252,246,0 chrXIV 525484 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=19.60;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2130,234,0 chrXIV 525522 . T C 1872 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.53;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1905,210,0 chrXIV 525575 . T C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.036;QD=22.30;ReadPosRankSum=1.696;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2218,249,0 chrXIV 525769 . T C 2033 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.2330;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.74;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2066,234,0 chrXIV 525827 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.37;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2373,261,0 chrXIV 525857 . T C 1638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5820;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.535;QD=20.22;ReadPosRankSum=1.689;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1671,192,0 chrXIV 525960 . T C 2360 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=11.4312;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.61;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2393,270,0 chrXIV 526397 . G A 3014 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.96;SB=-1.439e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3047,336,0 chrXIV 526658 . G A 2414 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.99;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2447,273,0 chrXIV 526742 . A T 1771 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.59;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1804,201,0 chrXIV 526838 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.90;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2421,267,0 chrXIV 526877 . T G 2331 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.3027;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.59;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2364,273,0 chrXIV 527048 . G T 2093 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.00;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2126,240,0 chrXIV 527207 . C A 1760 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.43;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1793,198,0 chrXIV 527225 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=15.94;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1691,192,0 chrXIV 527330 . A G 1846 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.51;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1879,219,0 chrXIV 527510 . G A 213.01 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=5.3928;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=2.45;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:27:246,27,0 chrXIV 527794 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.56;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1477,165,0 chrXIV 528195 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.41;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2367,258,0 chrXIV 528641 . C T 2367 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.1525;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2400,264,0 chrXIV 529082 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.9994;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.99;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2518,279,0 chrXIV 529136 . A G 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.279;QD=19.00;ReadPosRankSum=2.199;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:3,109:112:99:2161,227,0 chrXIV 530856 . A G 2620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=6.021;HaplotypeScore=7.2738;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.209;QD=22.39;ReadPosRankSum=1.702;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,115:117:99:2653,303,0 chrXIV 531087 . A G 2753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=3.039;HaplotypeScore=10.9483;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.284;QD=19.12;ReadPosRankSum=2.398;SB=-1.820e+03 GT:AD:DP:GQ:PL 1/1:2,142:144:99:2786,312,0 chrXIV 531505 . G T 2604 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=21.88;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2637,288,0 chrXIV 531656 . G A 2640 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.2481;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.95;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2673,297,0 chrXIV 532165 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.44;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1860,210,0 chrXIV 532220 . G A 1028 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.72;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1061,117,0 chrXIV 532531 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.23;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1826,201,0 chrXIV 532649 . A C 1031 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.04;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1064,120,0 chrXIV 532670 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.59;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1145,126,0 chrXIV 532790 . T A 1867 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.22;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1900,213,0 chrXIV 532945 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.39;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1526,165,0 chrXIV 533039 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.62;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1308,141,0 chrXIV 533180 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.49;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1272,144,0 chrXIV 533288 . T C 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.229;QD=21.06;ReadPosRankSum=1.676;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1339,150,0 chrXIV 533381 . C T 1135 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1168,129,0 chrXIV 533519 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.36;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1245,141,0 chrXIV 533533 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.20;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1358,159,0 chrXIV 533705 . T A 1117 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.08;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1150,126,0 chrXIV 533912 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=1.118;QD=18.89;ReadPosRankSum=1.676;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1204,135,0 chrXIV 533926 . T C 1177 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.95;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1210,135,0 chrXIV 534041 . T A 843 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.09;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:96:876,96,0 chrXIV 534071 . T A 909 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=18.55;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:942,108,0 chrXIV 534077 . G A 839 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=17.12;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,48:49:99:872,102,0 chrXIV 534078 . G A 855 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=18.19;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:888,99,0 chrXIV 534210 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.933;QD=22.94;ReadPosRankSum=1.666;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1226,138,0 chrXIV 534316 . T C 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.073;QD=18.81;ReadPosRankSum=2.322;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1481,165,0 chrXIV 534658 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.5531;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.08;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1946,213,0 chrXIV 535040 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.74;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1607,186,0 chrXIV 535284 . T C 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6529;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.326;QD=22.97;ReadPosRankSum=1.698;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2353,270,0 chrXIV 535369 . A G 1473 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.00;FS=3.337;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.180;QD=20.75;ReadPosRankSum=1.682;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:1,68:71:99:1506,171,0 chrXIV 535580 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.68;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1718,198,0 chrXIV 535584 . A G 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.577;QD=17.01;ReadPosRankSum=1.695;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1615,186,0 chrXIV 535827 . T C 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=6.743;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.797;QD=20.32;ReadPosRankSum=2.390;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1699,192,0 chrXIV 535981 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.60;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1577,180,0 chrXIV 536139 . C T 963 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.06;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:996,114,0 chrXIV 536514 . G T 1434 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5039;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.64;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1467,162,0 chrXIV 536661 . A G 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=10.3451;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.633;QD=20.34;ReadPosRankSum=1.633;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1457,171,0 chrXIV 536830 . G T 870 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.22;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:903,99,0 chrXIV 536942 . T C 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.817;QD=20.40;ReadPosRankSum=2.283;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,57:60:99:1257,144,0 chrXIV 537042 . A G 1190 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.51;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1223,141,0 chrXIV 537303 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3778;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.84;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1562,174,0 chrXIV 537549 . C T 2681 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.28;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2714,297,0 chrXIV 537552 . T G 2488 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.75;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2521,294,0 chrXIV 537637 . A G 2384 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.2983;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2417,273,0 chrXIV 537756 . A G 2338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.130;QD=20.33;ReadPosRankSum=1.702;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:2371,273,0 chrXIV 537771 . A G 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=3.048;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.015;QD=17.08;ReadPosRankSum=1.702;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:1,114:117:99:2031,234,0 chrXIV 537783 . T G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=-1.319;QD=15.92;ReadPosRankSum=1.700;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1768,198,0 chrXIV 537981 . A C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DP=109;Dels=0.00;FS=2.902;HaplotypeScore=10.0146;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.880;QD=17.12;ReadPosRankSum=2.404;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:1899,222,0 chrXIV 538122 . A G 2232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=4.1823;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.796;QD=19.93;ReadPosRankSum=1.701;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2265,258,0 chrXIV 538142 . G A 2365 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.93;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2398,276,0 chrXIV 538315 . G A 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.61;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1327,147,0 chrXIV 538564 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.44;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1770,198,0 chrXIV 538640 . A G 1617 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.00;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1650,195,0 chrXIV 539561 . T C 622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-1.733;QD=16.81;ReadPosRankSum=1.639;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:655,75,0 chrXIV 539576 . A T 683 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=17.97;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:716,78,0 chrXIV 539639 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.06;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1277,144,0 chrXIV 539903 . C T 2358 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=22.0830;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.67;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2391,264,0 chrXIV 539950 . A T 2549 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.17;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2582,288,0 chrXIV 540985 . G A 1392 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.09;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1425,162,0 chrXIV 541168 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1433,165,0 chrXIV 541746 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.28;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1151,126,0 chrXIV 541750 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.306;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.093;QD=16.51;ReadPosRankSum=1.679;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1106,126,0 chrXIV 541892 . A G 2313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.165;QD=19.94;ReadPosRankSum=1.583;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2346,264,0 chrXIV 542236 . G T 1510 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=15.57;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1543,174,0 chrXIV 542386 . G A 1216 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.71;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1249,141,0 chrXIV 542443 . C T 1008 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.68;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1041,120,0 chrXIV 542496 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.42;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1684,189,0 chrXIV 542549 . T C 1963 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.83;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1996,228,0 chrXIV 542570 . G A 2184 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.05;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2217,243,0 chrXIV 542690 . G C 1528 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.56;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1561,180,0 chrXIV 542726 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.43;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1134,126,0 chrXIV 542798 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.69;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1006,111,0 chrXIV 542931 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.36;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1446,165,0 chrXIV 543016 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.2874;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.03;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2145,237,0 chrXIV 543724 . A G 1942 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.85;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1975,231,0 chrXIV 543829 . A T 1568 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.85;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1601,177,0 chrXIV 544060 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1310,144,0 chrXIV 544998 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.40;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1294,153,0 chrXIV 545184 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.62;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1113,126,0 chrXIV 545273 . T C 938 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:971,108,0 chrXIV 545697 . T C 1796 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1829,207,0 chrXIV 545862 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.99;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1495,174,0 chrXIV 546186 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.59;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1929,219,0 chrXIV 546237 . T C 2447 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.39;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2480,288,0 chrXIV 546598 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.48;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1689,192,0 chrXIV 546659 . C T 941 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.10;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:974,105,0 chrXIV 546781 . C T 879 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.94;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:912,99,0 chrXIV 546849 . A T 852 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.39;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:96:885,96,0 chrXIV 546992 . C T 643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.622;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;MQRankSum=2.013;QD=18.91;ReadPosRankSum=1.281;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:2,32:34:42:676,42,0 chrXIV 547197 . G T 236 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=14.75;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:269,30,0 chrXIV 547202 . C A 203.01 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=11.28;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:27:236,27,0 chrXIV 547365 . C G 682 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.00;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:715,84,0 chrXIV 547464 . T C 734 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=15.29;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:87:767,87,0 chrXIV 547614 . C T 676 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.33;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:709,78,0 chrXIV 547721 . A C 1173 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.23;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1206,138,0 chrXIV 547766 . A T 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.4821;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.066;QD=19.29;ReadPosRankSum=2.185;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1113,123,0 chrXIV 548403 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.306;QD=18.13;ReadPosRankSum=1.691;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1574,174,0 chrXIV 548516 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.540;DP=77;Dels=0.00;FS=5.703;HaplotypeScore=9.0317;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.408;QD=19.79;ReadPosRankSum=2.382;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1557,161,0 chrXIV 552035 . C G 2075 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1258;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.54;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2108,240,0 chrXIV 552403 . G A 2278 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.98;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2311,261,0 chrXIV 552429 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.35;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2181,243,0 chrXIV 552668 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.613;QD=19.12;ReadPosRankSum=1.660;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1907,219,0 chrXIV 552682 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.75;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1889,213,0 chrXIV 553403 . C G 1395 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.85;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1428,165,0 chrXIV 554217 . T C 1057 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.94;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1090,123,0 chrXIV 555245 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.91;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2118,237,0 chrXIV 555551 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.03;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1515,174,0 chrXIV 555641 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.58;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1556,174,0 chrXIV 555698 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.16;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1125,126,0 chrXIV 556301 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=8.9357;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1900,210,0 chrXIV 556380 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2006,225,0 chrXIV 556914 . A T 2700 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.31;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2733,300,0 chrXIV 556974 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.47;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2674,300,0 chrXIV 557562 . T C 1279 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.506;QD=19.68;ReadPosRankSum=1.679;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1312,147,0 chrXIV 557698 . G A 1057 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.78;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1090,123,0 chrXIV 558343 . A G 2408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.0354;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.732;QD=16.84;ReadPosRankSum=1.708;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2441,285,0 chrXIV 558811 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.4857;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.99;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2192,252,0 chrXIV 559022 . A G 1342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.811;QD=16.99;ReadPosRankSum=1.688;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1375,156,0 chrXIV 559202 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.56;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1838,204,0 chrXIV 559455 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.19;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:521,60,0 chrXIV 559694 . G T 2036 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=15.1294;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.34;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2069,228,0 chrXIV 559885 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.01;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1651,186,0 chrXIV 559919 . C G 1060 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.83;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1093,126,0 chrXIV 559921 . G A 1179 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.02;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1212,135,0 chrXIV 560119 . A G 2266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=3.033;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.645;QD=21.58;ReadPosRankSum=2.403;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2299,261,0 chrXIV 560302 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4481;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.22;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1794,201,0 chrXIV 560362 . C T 1121 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.33;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1154,126,0 chrXIV 560365 . T C 1104 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.40;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1137,132,0 chrXIV 560371 . G A 990 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.68;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1023,117,0 chrXIV 560592 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=4.771;HaplotypeScore=115.0396;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.419;QD=17.00;ReadPosRankSum=1.143;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:2634,306,0 chrXIV 560611 . T C 2393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=137;Dels=0.00;FS=2.629;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=-1.032;QD=17.47;ReadPosRankSum=2.414;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:2,135:137:99:2426,276,0 chrXIV 560883 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=4.271;HaplotypeScore=6.4074;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.775;QD=20.06;ReadPosRankSum=1.704;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,122:125:99:2540,291,0 chrXIV 561056 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2638;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.49;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1924,213,0 chrXIV 561110 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=24.41;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1449,159,0 chrXIV 561323 . G A 818 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:93:851,93,0 chrXIV 561446 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=25.40;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2243,249,0 chrXIV 561632 . A G 2414 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=23.90;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2447,282,0 chrXIV 561673 . T C 1712 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.554;DP=86;Dels=0.00;FS=3.344;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=5;MQRankSum=0.634;QD=19.91;ReadPosRankSum=2.346;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:8,76:86:99:1745,183,0 chrXIV 561771 . T C 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=81;Dels=0.00;FS=11.358;HaplotypeScore=5.8761;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;MQRankSum=2.359;QD=19.09;ReadPosRankSum=2.389;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1579,177,0 chrXIV 561788 . A T 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=2;MQRankSum=1.516;QD=16.94;ReadPosRankSum=0.180;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:3,95:98:99:1693,186,0 chrXIV 561869 . G A 1638 filter AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=13;QD=15.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,94:107:99:1671,183,0 chrXIV 561942 . T A 3929.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.384;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=13.8337;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=9;MQRankSum=1.976;QD=19.35;ReadPosRankSum=-0.276;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:12,191:203:99:3929,425,0 chrXIV 563059 . T C 80.26 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.75;MQ0=3;QD=6.17;SB=-2.556e-01 GT:AD:DP:GQ:PL 1/1:0,11:13:15:113,15,0 chrXIV 563111 . T A 75.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.04;MQ0=3;QD=3.76;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:108,15,0 chrXIV 563131 . T G 75.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.62;MQ0=3;MQRankSum=-0.116;QD=4.18;ReadPosRankSum=1.504;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:1,17:18:15:108,15,0 chrXIV 563389 . A T 36.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.35;MQ0=0;QD=9.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:9:69,9,0 chrXIV 563408 . T C 244 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.70;MQ0=0;QD=9.04;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:36:277,36,0 chrXIV 563413 . T A 246 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=1;QD=8.79;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:36:279,36,0 chrXIV 563416 . G A 245 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.95;MQ0=3;QD=8.17;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,28:30:36:278,36,0 chrXIV 563428 . G A 245 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.08;MQ0=13;QD=6.12;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,38:40:36:278,36,0 chrXIV 567595 . A G 39.97 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.04;MQ0=63;QD=0.56;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,71:71:9:72,9,0 chrXIV 567612 . T A 39.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.572;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=6.36;MQ0=56;MQRankSum=1.067;QD=0.62;ReadPosRankSum=-0.572;SB=-2.480e+01 GT:AD:DP:GQ:PL 1/1:42,22:64:9:72,9,0 chrXIV 568045 . T A 152.06 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=4.75;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:21:185,21,0 chrXIV 568046 . T C 147.06 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;QD=4.60;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,32:32:21:180,21,0 chrXIV 568095 . G A 972 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=17.05;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1005,111,0 chrXIV 568278 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=14.14;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1009,117,0 chrXIV 568362 . A G 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=69;Dels=0.01;FS=2.858;HaplotypeScore=14.9524;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=0.645;QD=15.61;ReadPosRankSum=2.303;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1110,129,0 chrXIV 568442 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.48;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1323,144,0 chrXIV 568547 . A G 805 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.17;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:838,99,0 chrXIV 568887 . A G 2135 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.01;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2168,255,0 chrXIV 568967 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.62;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1603,183,0 chrXIV 569371 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1745,192,0 chrXIV 569485 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.44;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1724,186,0 chrXIV 569942 . C T 339 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=7;QD=6.28;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:42:372,42,0 chrXIV 569961 . G C 130.13 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.04;MQ0=2;QD=3.34;SB=-5.211e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:18:163,18,0 chrXIV 569967 . C T 67.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;DP=44;Dels=0.00;FS=43.500;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=19.48;MQ0=2;MQRankSum=-2.935;QD=1.52;ReadPosRankSum=1.521;SB=-2.984e+00 GT:AD:DP:GQ:PL 0/1:6,38:44:32:97,0,32 chrXIV 570002 . G A 243.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;DP=48;Dels=0.00;FS=112.854;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=0;MQRankSum=4.710;QD=5.06;ReadPosRankSum=1.322;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:35,13:48:99:273,0,103 chrXIV 570020 . C T 421 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=1;QD=8.42;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:51:454,51,0 chrXIV 570034 . C A 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DP=49;Dels=0.00;FS=112.854;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.26;MQ0=1;MQRankSum=-4.501;QD=0.88;ReadPosRankSum=-2.784;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:14,35:49:73:73,0,240 chrXIV 570249 . G A 66.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;DP=43;Dels=0.00;FS=1.932;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=25.81;MQ0=13;MQRankSum=0.959;QD=1.54;ReadPosRankSum=-0.026;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:32,11:43:96:96,0,376 chrXIV 570276 . A G 207.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;DP=51;Dels=0.00;FS=1.324;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=16;MQRankSum=0.188;QD=4.06;ReadPosRankSum=-1.349;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:32,18:51:99:237,0,329 chrXIV 570307 . G A 238.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;DP=47;Dels=0.02;FS=3.353;HaplotypeScore=5.4434;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=12;MQRankSum=1.249;QD=5.06;ReadPosRankSum=-0.208;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:26,20:46:99:268,0,214 chrXIV 570341 . C T 225.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=54;Dels=0.04;FS=15.542;HaplotypeScore=5.4434;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=14;MQRankSum=0.585;QD=4.17;ReadPosRankSum=-0.642;SB=-1.260e+02 GT:AD:DP:GQ:PL 0/1:26,26:52:99:255,0,173 chrXIV 570367 . C G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;DP=53;Dels=0.00;FS=30.075;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=12;MQRankSum=-1.842;QD=1.34;ReadPosRankSum=2.302;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:30,22:53:99:101,0,311 chrXIV 570395 . A C 495 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=14;QD=9.17;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:60:528,60,0 chrXIV 570456 . A G 716.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DP=75;Dels=0.00;FS=23.250;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=33.65;MQ0=12;MQRankSum=0.742;QD=9.55;ReadPosRankSum=-0.347;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:28,47:75:99:746,0,113 chrXIV 570524 . G A 486.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=1;MLEAF=0.500;MQ=41.36;MQ0=5;MQRankSum=1.215;QD=6.31;ReadPosRankSum=1.190;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:43,32:77:99:516,0,737 chrXIV 570574 . G A 512 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=3;QD=13.84;SB=-6.527e-03 GT:AD:DP:GQ:PL 1/1:0,36:37:60:545,60,0 chrXIV 570581 . C T 279.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=33;Dels=0.00;FS=7.634;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=25.06;MQ0=4;MQRankSum=0.837;QD=8.46;ReadPosRankSum=-0.664;SB=-2.028e-01 GT:AD:DP:GQ:PL 0/1:9,24:33:8:309,0,8 chrXIV 570609 . A G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=20.32;MQ0=7;MQRankSum=-0.785;QD=0.52;ReadPosRankSum=-1.324;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,14:37:49:49,0,152 chrXIV 570623 . C T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;DP=40;Dels=0.00;FS=14.780;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=8;MQRankSum=-0.913;QD=0.63;ReadPosRankSum=0.714;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:19,21:40:55:55,0,130 chrXIV 570632 . A G 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;DP=43;Dels=0.00;FS=4.076;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=8;MQRankSum=-1.303;QD=1.86;ReadPosRankSum=-1.477;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:20,23:43:99:110,0,173 chrXIV 570638 . G A 207.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.886;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=8;MQRankSum=-1.387;QD=4.06;ReadPosRankSum=-1.931;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:22,29:51:99:237,0,141 chrXIV 570645 . C T 555 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.10;MQ0=8;QD=10.28;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:66:588,66,0 chrXIV 570646 . T C 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;DP=55;Dels=0.00;FS=2.509;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=8;MQRankSum=-3.156;QD=2.80;ReadPosRankSum=0.096;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:29,26:55:99:184,0,262 chrXIV 570649 . A G 155.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;DP=55;Dels=0.00;FS=2.509;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=8;MQRankSum=-2.750;QD=2.82;ReadPosRankSum=0.011;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:29,26:55:99:185,0,264 chrXIV 570674 . C A 514.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;DP=89;Dels=0.00;FS=5.631;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=31.47;MQ0=7;MQRankSum=1.405;QD=5.78;ReadPosRankSum=-0.616;SB=-2.800e+02 GT:AD:DP:GQ:PL 0/1:41,46:89:99:544,0,459 chrXIV 570720 . T C 1012.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DP=117;Dels=0.00;FS=3.435;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=36.03;MQ0=5;MQRankSum=3.778;QD=8.65;ReadPosRankSum=-0.168;SB=-5.880e+02 GT:AD:DP:GQ:PL 0/1:53,64:117:99:1042,0,551 chrXIV 570732 . C T 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;DP=123;Dels=0.00;FS=8.240;HaplotypeScore=14.0727;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=5;MQRankSum=-2.926;QD=2.63;ReadPosRankSum=1.162;SB=-1.450e+02 GT:AD:DP:GQ:PL 0/1:75,41:123:99:353,0,1283 chrXIV 570753 . G A 1285.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DP=119;Dels=0.00;FS=15.422;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=39.27;MQ0=6;MQRankSum=2.911;QD=10.80;ReadPosRankSum=1.199;SB=-8.438e+02 GT:AD:DP:GQ:PL 0/1:28,89:119:99:1315,0,191 chrXIV 570761 . C T 1835 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=6;MQRankSum=0.017;QD=16.83;ReadPosRankSum=0.017;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,106:109:99:1868,207,0 chrXIV 570808 . T C 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;DP=114;Dels=0.00;FS=3.021;HaplotypeScore=12.1439;MLEAC=1;MLEAF=0.500;MQ=39.06;MQ0=6;MQRankSum=-1.489;QD=1.06;ReadPosRankSum=-1.778;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:86,28:114:99:151,0,992 chrXIV 570825 . C T 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=104;Dels=0.00;FS=8.781;HaplotypeScore=10.3308;MLEAC=1;MLEAF=0.500;MQ=37.14;MQ0=10;MQRankSum=-0.020;QD=5.91;ReadPosRankSum=-1.184;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:34,70:104:99:645,0,348 chrXIV 570831 . A C 361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;DP=115;Dels=0.00;FS=1.632;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=12;MQRankSum=0.828;QD=3.14;ReadPosRankSum=1.588;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:69,42:115:99:391,0,584 chrXIV 570843 . G T 768.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.2430;MLEAC=1;MLEAF=0.500;MQ=36.20;MQ0=15;MQRankSum=2.339;QD=6.24;ReadPosRankSum=1.156;SB=-5.040e+02 GT:AD:DP:GQ:PL 0/1:61,61:123:99:798,0,431 chrXIV 570890 . G A 2221 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=21;QD=14.42;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,154:154:99:2254,249,0 chrXIV 570941 . T C 1446 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=8;MQRankSum=-1.135;QD=15.22;ReadPosRankSum=1.692;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1479,168,0 chrXIV 570960 . C T 956 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=8;QD=12.58;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:989,108,0 chrXIV 570986 . T C 850 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=10;QD=12.32;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:883,99,0 chrXIV 571049 . G A 603 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=12;QD=10.96;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:69:636,69,0 chrXIV 571100 . C T 1945 filter AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.5697;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=4;QD=15.81;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:1978,219,0 chrXIV 571220 . C A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DP=150;Dels=0.00;FS=3.734;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=42;MQRankSum=-3.789;QD=0.61;ReadPosRankSum=-2.434;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:98,52:150:99:122,0,1439 chrXIV 571276 . T C 877 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=26;QD=12.90;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:910,105,0 chrXIV 571312 . A G 41.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=28;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.25;MQ0=23;MQRankSum=-0.727;QD=1.50;ReadPosRankSum=0.727;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,26:28:9:74,9,0 chrXIV 571347 . C T 241 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=20.33;MQ0=15;QD=8.03;SB=-1.099e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:30:274,30,0 chrXIV 571380 . G A 657 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=11;QD=13.41;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:78:690,78,0 chrXIV 571502 . T C 406.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300;DP=153;Dels=0.00;FS=3.373;HaplotypeScore=9.8388;MLEAC=1;MLEAF=0.500;MQ=16.50;MQ0=40;MQRankSum=0.605;QD=2.65;ReadPosRankSum=-0.245;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:81,71:153:99:436,0,341 chrXIV 571535 . C G 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=122;Dels=0.00;FS=4.536;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=16.73;MQ0=48;MQRankSum=-1.565;QD=1.10;ReadPosRankSum=1.319;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:75,46:122:99:164,0,341 chrXIV 571707 . T C 840 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=12;QD=15.56;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:873,99,0 chrXIV 571715 . T C 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985;DP=64;Dels=0.00;FS=13.412;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=30.01;MQ0=12;MQRankSum=-3.261;QD=1.95;ReadPosRankSum=-0.184;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:35,29:64:99:155,0,544 chrXIV 571751 . G A 415.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.160;DP=86;Dels=0.00;FS=1.846;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=33.76;MQ0=1;MQRankSum=-2.764;QD=4.83;ReadPosRankSum=-0.813;SB=-3.160e+02 GT:AD:DP:GQ:PL 0/1:43,43:86:99:445,0,536 chrXIV 571754 . T A 390.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=33.48;MQ0=1;MQRankSum=-2.792;QD=4.29;ReadPosRankSum=-0.468;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:45,46:91:99:420,0,559 chrXIV 571757 . G A 1208 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=13.27;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1241,138,0 chrXIV 571766 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=12.54;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:1600,183,0 chrXIV 571793 . A G 332.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.344;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=10;MQRankSum=0.864;QD=2.39;ReadPosRankSum=-1.096;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:79,57:139:99:362,0,1056 chrXIV 571802 . A G 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=138;Dels=0.00;FS=4.722;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=31.52;MQ0=16;MQRankSum=0.276;QD=2.22;ReadPosRankSum=-0.397;SB=-2.500e+02 GT:AD:DP:GQ:PL 0/1:80,57:138:99:336,0,1065 chrXIV 571841 . C T 446.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.336;DP=119;Dels=0.00;FS=7.873;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=33;MQRankSum=0.217;QD=3.75;ReadPosRankSum=0.773;SB=-3.510e+02 GT:AD:DP:GQ:PL 0/1:64,54:119:99:476,0,754 chrXIV 571889 . T C 1069 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=22.87;MQ0=35;MQRankSum=1.663;QD=12.58;ReadPosRankSum=1.663;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1102,126,0 chrXIV 571940 . T C 705 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=23.78;MQ0=14;QD=11.56;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:84:738,84,0 chrXIV 571968 . T C 560 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=22.66;MQ0=8;QD=9.82;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:69:593,69,0 chrXIV 571971 . C G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=56;Dels=0.00;FS=36.199;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=6;MQRankSum=-2.858;QD=0.86;ReadPosRankSum=0.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,17:56:78:78,0,366 chrXIV 571979 . C T 524 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=10;QD=8.88;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:63:557,63,0 chrXIV 571992 . T C 577 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=10;QD=8.61;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:69:610,69,0 chrXIV 572008 . G A 556 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=11;QD=8.42;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:66:66:589,66,0 chrXIV 572015 . C T 694 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.9439;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=15;QD=8.16;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:78:727,78,0 chrXIV 572096 . C T 380.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=134;Dels=0.00;FS=7.408;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=25;MQRankSum=-2.234;QD=2.84;ReadPosRankSum=1.282;SB=-2.550e+02 GT:AD:DP:GQ:PL 0/1:69,65:134:99:410,0,625 chrXIV 572097 . C A 395.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;DP=141;Dels=0.00;FS=3.441;HaplotypeScore=4.6085;MLEAC=1;MLEAF=0.500;MQ=32.12;MQ0=25;MQRankSum=-2.072;QD=2.80;ReadPosRankSum=0.790;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:70,68:141:99:425,0,608 chrXIV 572105 . C T 519.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.691;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.9994;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=23;MQRankSum=0.867;QD=3.65;ReadPosRankSum=0.787;SB=-2.160e+02 GT:AD:DP:GQ:PL 0/1:73,68:142:99:549,0,631 chrXIV 572137 . A G 405.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.222;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.0292;MLEAC=1;MLEAF=0.500;MQ=35.27;MQ0=17;MQRankSum=-0.665;QD=2.61;ReadPosRankSum=1.513;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:88,66:155:99:435,0,865 chrXIV 572195 . C T 862 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.75;MQ0=6;QD=10.02;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:895,105,0 chrXIV 572219 . G A 299 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=3;QD=8.54;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:39:332,39,0 chrXIV 572220 . A G 94.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;DP=34;Dels=0.00;FS=41.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.08;MQ0=3;MQRankSum=-1.204;QD=2.76;ReadPosRankSum=0.951;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:11,23:34:99:124,0,151 chrXIV 572224 . G A 356 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=3;QD=9.89;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:389,45,0 chrXIV 572237 . G A 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=35;Dels=0.00;FS=47.926;HaplotypeScore=2.7949;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=4;MQRankSum=1.522;QD=4.57;ReadPosRankSum=-1.364;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:19,16:35:76:190,0,76 chrXIV 572253 . C T 275.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.329;DP=36;Dels=0.00;FS=55.101;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=29.28;MQ0=3;MQRankSum=2.045;QD=7.65;ReadPosRankSum=0.755;SB=-1.641e-01 GT:AD:DP:GQ:PL 0/1:16,20:36:9:305,0,9 chrXIV 572275 . G A 348.08 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;DP=43;Dels=0.00;FS=86.332;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=3;MQRankSum=3.704;QD=8.09;ReadPosRankSum=0.812;SB=-1.809e+01 GT:AD:DP:GQ:PL 1/1:15,28:43:20:381,20,0 chrXIV 572298 . A G 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;DP=53;Dels=0.00;FS=62.682;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=5;MQRankSum=-3.823;QD=0.64;ReadPosRankSum=-0.841;SB=-2.098e+01 GT:AD:DP:GQ:PL 0/1:32,21:53:64:64,0,444 chrXIV 572311 . A G 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;DP=61;Dels=0.00;FS=49.516;HaplotypeScore=2.5105;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=6;MQRankSum=-3.796;QD=2.02;ReadPosRankSum=-0.980;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:34,26:61:99:153,0,357 chrXIV 572330 . C T 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.073;DP=60;Dels=0.00;FS=21.098;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.32;MQ0=5;MQRankSum=-2.659;QD=4.97;ReadPosRankSum=-0.192;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:26,33:60:99:328,0,188 chrXIV 572335 . G A 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.013;DP=57;Dels=0.00;FS=17.422;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.32;MQ0=5;MQRankSum=-1.871;QD=5.51;ReadPosRankSum=-0.009;SB=-4.601e+01 GT:AD:DP:GQ:PL 0/1:23,34:57:99:344,0,175 chrXIV 572360 . G C 503 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.0416;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=7;QD=9.67;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:66:536,66,0 chrXIV 572529 . C T 752.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.057;DP=82;Dels=0.00;FS=1.058;HaplotypeScore=5.0573;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=12;MQRankSum=2.775;QD=9.17;ReadPosRankSum=1.256;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:28,54:82:99:782,0,247 chrXIV 572597 . T C 517 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=1;QD=17.23;SB=-1.210e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:550,63,0 chrXIV 572600 . A G 464 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=2;QD=16.00;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:57:497,57,0 chrXIV 572643 . A G 93.26 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.52;MQ0=7;QD=4.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:15:126,15,0 chrXIV 572878 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;DP=86;Dels=0.00;FS=134.680;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=24.50;MQ0=2;MQRankSum=4.833;QD=0.16;ReadPosRankSum=3.003;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,26:86:44:44,0,971 chrXIV 572925 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.967;DP=87;Dels=0.00;FS=123.744;HaplotypeScore=7.2253;MLEAC=1;MLEAF=0.500;MQ=20.79;MQ0=29;MQRankSum=5.151;QD=0.55;ReadPosRankSum=-3.286;SB=1.18 GT:AD:DP:GQ:PL 0/1:52,35:87:78:78,0,862 chrXIV 573274 . T C 69.51 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=8.93;MQ0=60;QD=0.83;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:30,54:84:12:102,12,0 chrXIV 573505 . A G 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=21;MQRankSum=0.092;QD=3.39;ReadPosRankSum=0.708;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,18:46:99:186,0,169 chrXIV 573537 . T C 895 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=1;MQRankSum=-1.733;QD=22.37;ReadPosRankSum=1.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,38:40:99:928,108,0 chrXIV 573565 . T C 385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=28.08;MQ0=10;MQRankSum=-1.273;QD=5.83;ReadPosRankSum=-0.961;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,35:66:99:415,0,460 chrXIV 573568 . G C 1100 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=12;QD=15.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1133,129,0 chrXIV 573662 . C T 476 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=66;QD=5.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:87:57:509,57,0 chrXIV 573783 . C T 316 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=29;QD=7.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:19,23:42:39:349,39,0 chrXIV 573939 . A C 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=1;MQRankSum=-0.752;QD=14.48;ReadPosRankSum=1.697;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1481,168,0 chrXIV 573972 . C T 377.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DP=73;Dels=0.00;FS=84.674;HaplotypeScore=6.4539;MLEAC=1;MLEAF=0.500;MQ=39.50;MQ0=4;MQRankSum=-1.000;QD=5.16;ReadPosRankSum=-1.380;SB=-1.740e+02 GT:AD:DP:GQ:PL 0/1:28,44:73:99:407,0,295 chrXIV 574001 . A C 283 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=34.7485;MLEAC=2;MLEAF=1.00;MQ=32.97;MQ0=5;QD=6.15;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:36:316,36,0 chrXIV 574012 . C T 176.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=43;Dels=0.00;FS=8.692;HaplotypeScore=4.9421;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=5;MQRankSum=-1.639;QD=4.09;ReadPosRankSum=1.545;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:6,36:43:24:209,24,0 chrXIV 574027 . G A 130.13 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=5;QD=6.20;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:5,16:21:18:163,18,0 chrXIV 574033 . G A 161.06 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=5;QD=7.67;SB=-1.681e+02 GT:AD:DP:GQ:PL 1/1:5,16:21:21:194,21,0 chrXIV 574042 . G A 259 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=5;QD=8.35;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:5,24:31:33:292,33,0 chrXIV 574150 . T C 1700 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=22.97;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1733,201,0 chrXIV 574466 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.79;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1820,201,0 chrXIV 574776 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.7909;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.23;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1692,189,0 chrXIV 575011 . A G 2140 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2173,246,0 chrXIV 575525 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.71;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1380,156,0 chrXIV 576084 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.35;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1421,153,0 chrXIV 576383 . A G 1076 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.30;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1109,129,0 chrXIV 576450 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.60;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1104,120,0 chrXIV 577194 . A G 2027 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.78;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2060,246,0 chrXIV 577416 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.37;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1110,120,0 chrXIV 577421 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.87;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1203,135,0 chrXIV 577433 . G A 1123 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.60;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1156,132,0 chrXIV 577727 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.18;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1486,168,0 chrXIV 577754 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.20;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1346,147,0 chrXIV 577988 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0065;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=16.93;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,93:99:99:1709,198,0 chrXIV 578078 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.33;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2109,228,0 chrXIV 578222 . T C 2097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.577;QD=20.97;ReadPosRankSum=1.697;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2130,243,0 chrXIV 579044 . T A 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.504;QD=20.03;ReadPosRankSum=1.276;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1575,155,0 chrXIV 579121 . A G 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-0.689;QD=17.87;ReadPosRankSum=2.258;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1409,162,0 chrXIV 579133 . G C 1352 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.03;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1385,159,0 chrXIV 580621 . G C 1799 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.21;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1832,210,0 chrXIV 581466 . T C 707 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.64;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:740,84,0 chrXIV 581472 . G A 770 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.81;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:803,90,0 chrXIV 581502 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.38;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:828,93,0 chrXIV 581681 . C A 1018 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1051,120,0 chrXIV 581872 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.12;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1465,162,0 chrXIV 581935 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.47;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1535,177,0 chrXIV 583836 . A G 1692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=86;Dels=0.00;FS=2.613;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.202;QD=19.67;ReadPosRankSum=2.917;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:3,82:86:99:1725,192,0 chrXIV 584121 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.75;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1139,126,0 chrXIV 584126 . C T 1217 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.98;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1250,135,0 chrXIV 584186 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.15;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1810,198,0 chrXIV 584551 . T C 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.667;QD=20.96;ReadPosRankSum=1.699;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2255,255,0 chrXIV 584770 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.73;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1269,141,0 chrXIV 585226 . A G 1277 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.64;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1310,150,0 chrXIV 585550 . C T 953 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.45;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:986,114,0 chrXIV 585962 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1131,126,0 chrXIV 586543 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.80;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1201,135,0 chrXIV 586546 . C G 1263 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.30;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1296,144,0 chrXIV 587725 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.87;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1163,129,0 chrXIV 587752 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=15.30;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1165,132,0 chrXIV 588114 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.26;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1479,159,0 chrXIV 588191 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.04;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1548,177,0 chrXIV 588503 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.36;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1704,192,0 chrXIV 588509 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.730;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.400;QD=17.41;ReadPosRankSum=1.699;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1844,210,0 chrXIV 588959 . T C 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=2.992;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.249;QD=21.49;ReadPosRankSum=2.385;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1666,192,0 chrXIV 589211 . A G 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=10.684;HaplotypeScore=4.3894;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.118;QD=19.07;ReadPosRankSum=2.400;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1902,222,0 chrXIV 589219 . T C 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.543;QD=19.37;ReadPosRankSum=2.370;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1834,210,0 chrXIV 589327 . T A 2374 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.69;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2407,267,0 chrXIV 589342 . T C 2253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=134;Dels=0.00;FS=2.667;HaplotypeScore=10.3553;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.101;QD=16.81;ReadPosRankSum=2.138;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:2,132:134:99:2286,238,0 chrXIV 589451 . T C 2716 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.39;SB=-1.493e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2749,309,0 chrXIV 589622 . A T 3486.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=157;Dels=0.00;FS=3.670;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.710;QD=22.20;ReadPosRankSum=1.710;SB=-1.725e+03 GT:AD:DP:GQ:PL 1/1:1,156:157:99:3486,384,0 chrXIV 589664 . A T 3360.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.008;QD=21.96;ReadPosRankSum=1.687;SB=-1.928e+03 GT:AD:DP:GQ:PL 1/1:1,152:153:99:3360,372,0 chrXIV 589772 . G A 3324.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.61;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3324,363,0 chrXIV 589843 . A G 3160 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.35;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3193,354,0 chrXIV 589946 . A T 2632 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.50;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2665,297,0 chrXIV 590158 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.5723;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.65;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,111:114:99:2159,237,0 chrXIV 590468 . C A 2429 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.49;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2462,267,0 chrXIV 590594 . C T 1988 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.59;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:2021,222,0 chrXIV 590927 . C T 2812 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.97;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2845,315,0 chrXIV 591090 . A G 1159 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.56;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1192,138,0 chrXIV 591091 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.77;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1272,138,0 chrXIV 591344 . G A 2736 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.54;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2769,309,0 chrXIV 591556 . T C 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.410;QD=20.70;ReadPosRankSum=1.652;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:923,108,0 chrXIV 592102 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.98;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1722,189,0 chrXIV 592327 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=5.952;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.082;QD=22.98;ReadPosRankSum=1.622;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1481,168,0 chrXIV 592909 . T C 1134 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.039;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-1.008;QD=16.93;ReadPosRankSum=1.681;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1167,132,0 chrXIV 592912 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.34;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1195,132,0 chrXIV 593322 . C T 1389 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.77;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1422,156,0 chrXIV 595123 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1654,183,0 chrXIV 595549 . A T 2597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=114;Dels=0.00;FS=12.358;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.414;QD=22.78;ReadPosRankSum=2.901;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2630,288,0 chrXIV 595762 . G A 1694 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=16.13;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1727,192,0 chrXIV 595767 . C T 1662 SnpCluster AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.68;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1695,189,0 chrXIV 595772 . C T 1587 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=15.56;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1620,177,0 chrXIV 596346 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1643,180,0 chrXIV 596487 . A G 2172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=104;Dels=0.00;FS=6.500;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.586;QD=20.88;ReadPosRankSum=2.378;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:2,101:104:99:2205,249,0 chrXIV 596700 . A T 1783 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0158;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.59;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1816,207,0 chrXIV 597462 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1528,174,0 chrXIV 597776 . G A 1828 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.37;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1861,204,0 chrXIV 597964 . T A 826 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=16.20;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:859,96,0 chrXIV 597983 . T C 731 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=14.06;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:90:764,90,0 chrXIV 598012 . T C 690 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=13.02;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:81:723,81,0 chrXIV 598013 . A T 716 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=13.51;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:749,81,0 chrXIV 598176 . C T 996 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=5;QD=16.60;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1029,114,0 chrXIV 598229 . T G 206.01 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=8;QD=4.38;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:27:239,27,0 chrXIV 598567 . G A 127.13 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.08;MQ0=55;QD=1.90;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,66:67:18:160,18,0 chrXIV 598661 . C G 1243 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=20.78;MQ0=16;QD=15.16;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1276,150,0 chrXIV 598664 . A G 350.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=1;MLEAF=0.500;MQ=21.35;MQ0=16;MQRankSum=0.347;QD=4.07;ReadPosRankSum=0.992;SB=-2.280e+02 GT:AD:DP:GQ:PL 0/1:50,35:86:99:380,0,667 chrXIV 598724 . T C 615.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.303;DP=97;Dels=0.00;FS=4.607;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.20;MQ0=26;MQRankSum=0.340;QD=6.34;ReadPosRankSum=0.709;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:44,53:97:99:645,0,600 chrXIV 598787 . A G 127.13 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.73;MQ0=70;QD=1.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,81:81:18:160,18,0 chrXIV 598904 . T C 513.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;DP=167;Dels=0.00;FS=9.319;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=15.93;MQ0=55;MQRankSum=1.381;QD=3.07;ReadPosRankSum=1.404;SB=-4.007e+00 GT:AD:DP:GQ:PL 0/1:88,78:167:99:543,0,581 chrXIV 598922 . A G 360.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.380;DP=164;Dels=0.00;FS=6.558;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=15.62;MQ0=54;MQRankSum=-0.403;QD=2.20;ReadPosRankSum=-1.504;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:90,73:164:99:390,0,555 chrXIV 598955 . A G 224.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DP=176;Dels=0.00;FS=3.286;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=15.86;MQ0=57;MQRankSum=-1.146;QD=1.27;ReadPosRankSum=-0.314;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:113,63:176:99:254,0,783 chrXIV 599232 . A G 1061.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=14.4404;MLEAC=1;MLEAF=0.500;MQ=31.31;MQ0=0;MQRankSum=0.135;QD=6.03;ReadPosRankSum=0.440;SB=-4.000e+02 GT:AD:DP:GQ:PL 0/1:82,94:176:99:1091,0,1130 chrXIV 599304 . A G 1240.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;DP=163;Dels=0.00;FS=13.488;HaplotypeScore=19.1330;MLEAC=1;MLEAF=0.500;MQ=24.57;MQ0=33;MQRankSum=-1.869;QD=7.61;ReadPosRankSum=4.425;SB=-2.390e+02 GT:AD:DP:GQ:PL 0/1:67,96:163:99:1270,0,301 chrXIV 599351 . T C 492.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;DP=125;Dels=0.00;FS=146.734;HaplotypeScore=21.9625;MLEAC=1;MLEAF=0.500;MQ=26.15;MQ0=2;MQRankSum=6.754;QD=3.94;ReadPosRankSum=1.965;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,31:125:99:522,0,1194 chrXIV 599441 . T C 539.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;DP=140;Dels=0.00;FS=37.829;HaplotypeScore=8.8735;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=31;MQRankSum=-3.151;QD=3.85;ReadPosRankSum=-0.709;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,65:140:99:569,0,1329 chrXIV 599550 . T C 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853;DP=65;Dels=0.00;FS=1.118;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=11;MQRankSum=-1.128;QD=1.85;ReadPosRankSum=0.174;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:36,29:65:99:150,0,385 chrXIV 599612 . T G 1193 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=3.136;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=4;MQRankSum=0.742;QD=16.12;ReadPosRankSum=1.683;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1226,141,0 chrXIV 599654 . A G 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;DP=73;Dels=0.00;FS=5.747;HaplotypeScore=11.0850;MLEAC=1;MLEAF=0.500;MQ=40.92;MQ0=1;MQRankSum=-1.158;QD=0.48;ReadPosRankSum=-1.686;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:57,16:73:65:65,0,910 chrXIV 599723 . G A 257.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.411;DP=107;Dels=0.00;FS=0.976;HaplotypeScore=1.5518;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=20;MQRankSum=-2.578;QD=2.40;ReadPosRankSum=-1.844;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:70,36:107:99:287,0,821 chrXIV 599866 . C T 476.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=1;MLEAF=0.500;MQ=32.50;MQ0=14;MQRankSum=1.108;QD=5.41;ReadPosRankSum=1.605;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:33,55:88:99:506,0,206 chrXIV 599870 . C A 522.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;DP=85;Dels=0.00;FS=4.801;HaplotypeScore=24.5520;MLEAC=1;MLEAF=0.500;MQ=33.44;MQ0=14;MQRankSum=1.474;QD=6.14;ReadPosRankSum=2.148;SB=-2.670e+02 GT:AD:DP:GQ:PL 0/1:33,52:85:99:552,0,145 chrXIV 599876 . T C 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.367;DP=75;Dels=0.00;FS=0.985;HaplotypeScore=23.5786;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=9;MQRankSum=-1.360;QD=1.09;ReadPosRankSum=-0.800;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:48,27:75:99:112,0,633 chrXIV 599916 . C T 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=6;MQRankSum=-1.947;QD=5.18;ReadPosRankSum=-1.479;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:32,24:56:99:320,0,418 chrXIV 599921 . A G 312.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.051;DP=59;Dels=0.00;FS=2.316;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=39.00;MQ0=6;MQRankSum=2.642;QD=5.29;ReadPosRankSum=1.094;SB=-2.030e+02 GT:AD:DP:GQ:PL 0/1:27,32:59:99:342,0,333 chrXIV 599940 . T C 250.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911;DP=54;Dels=0.00;FS=10.698;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=7;MQRankSum=-1.874;QD=4.63;ReadPosRankSum=2.558;SB=-8.001e+01 GT:AD:DP:GQ:PL 0/1:30,24:54:99:280,0,275 chrXIV 599953 . T C 298.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.322;DP=57;Dels=0.00;FS=10.512;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=5;MQRankSum=-1.821;QD=5.23;ReadPosRankSum=1.711;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:29,28:57:99:328,0,293 chrXIV 599974 . A G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;DP=50;Dels=0.00;FS=25.403;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=5;MQRankSum=-0.730;QD=2.28;ReadPosRankSum=1.819;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,21:50:99:144,0,387 chrXIV 599976 . C T 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=47;Dels=0.00;FS=19.520;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.52;MQ0=5;MQRankSum=0.433;QD=2.68;ReadPosRankSum=1.458;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,21:47:99:156,0,288 chrXIV 599988 . C T 550 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=4;QD=11.96;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:66:583,66,0 chrXIV 599990 . C T 219.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;DP=46;Dels=0.00;FS=13.893;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=4;MQRankSum=-1.146;QD=4.76;ReadPosRankSum=0.264;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:24,22:46:99:249,0,194 chrXIV 599998 . G A 179.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DP=51;Dels=0.00;FS=14.674;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=9;MQRankSum=1.946;QD=3.51;ReadPosRankSum=-0.986;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:25,26:51:99:209,0,240 chrXIV 600014 . C T 277.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.83;MQ0=9;MQRankSum=1.252;QD=5.13;ReadPosRankSum=-1.370;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:23,31:54:99:307,0,156 chrXIV 600027 . C T 860 filter AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.36;MQ0=7;QD=12.29;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:893,102,0 chrXIV 600031 . T C 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;DP=70;Dels=0.00;FS=1.026;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=7;MQRankSum=-1.539;QD=3.90;ReadPosRankSum=-0.503;SB=-1.250e+02 GT:AD:DP:GQ:PL 0/1:44,26:70:99:303,0,554 chrXIV 600064 . T C 798 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.97;MQ0=10;QD=15.35;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:831,96,0 chrXIV 600071 . A T 743 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=16;QD=13.04;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:776,90,0 chrXIV 600101 . C T 635 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=21;QD=10.24;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:78:668,78,0 chrXIV 600114 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;DP=57;Dels=0.00;FS=1.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.27;MQ0=27;MQRankSum=-3.443;QD=0.81;ReadPosRankSum=-1.721;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,27:57:76:76,0,264 chrXIV 600165 . C G 274 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9935;MLEAC=2;MLEAF=1.00;MQ=18.70;MQ0=25;QD=5.83;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:39:307,39,0 chrXIV 600181 . A G 304 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=19.42;MQ0=18;MQRankSum=-1.428;QD=7.60;ReadPosRankSum=2.227;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:42:337,42,0 chrXIV 600188 . G A 302 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=21;QD=6.43;SB=-1.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:42:335,42,0 chrXIV 600236 . G A 991 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=8;QD=15.02;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1024,117,0 chrXIV 600259 . A G 928 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.16;MQ0=6;QD=13.45;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:961,111,0 chrXIV 600272 . G A 856 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=4;QD=14.27;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:889,102,0 chrXIV 600280 . G C 241.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DP=60;Dels=0.00;FS=25.193;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.48;MQ0=3;MQRankSum=-0.489;QD=4.02;ReadPosRankSum=2.059;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:27,33:60:99:271,0,385 chrXIV 600283 . A G 780 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=5;MQRankSum=0.760;QD=12.58;ReadPosRankSum=1.672;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:96:813,96,0 chrXIV 600311 . A G 485 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=58;Dels=0.00;FS=4.449;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=19;MQRankSum=0.222;QD=8.36;ReadPosRankSum=1.377;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:60:518,60,0 chrXIV 600362 . A G 547 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.43;MQ0=43;QD=7.39;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:66:580,66,0 chrXIV 600410 . G A 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;DP=53;Dels=0.00;FS=18.921;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.26;MQ0=35;MQRankSum=-3.065;QD=1.04;ReadPosRankSum=0.222;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:30,23:53:85:85,0,192 chrXIV 600449 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DP=36;Dels=0.00;FS=4.834;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=16;MQRankSum=-1.109;QD=0.72;ReadPosRankSum=0.000;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,14:36:56:56,0,169 chrXIV 600480 . G A 147.06 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.15;MQ0=3;QD=7.74;SB=-4.906e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:21:180,21,0 chrXIV 600485 . G A 163.03 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.54;MQ0=4;QD=6.79;SB=-6.602e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:24:196,24,0 chrXIV 600494 . C T 253 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=3;QD=8.72;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:286,33,0 chrXIV 600497 . A T 78.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.74;MQ0=3;MQRankSum=-0.545;QD=2.23;ReadPosRankSum=-0.503;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:12,23:35:99:108,0,120 chrXIV 600500 . C T 62.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=3;MQRankSum=-0.699;QD=1.68;ReadPosRankSum=-0.321;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:13,24:37:92:92,0,147 chrXIV 600536 . A G 371.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DP=86;Dels=0.00;FS=1.207;HaplotypeScore=3.8385;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=11;MQRankSum=1.041;QD=4.31;ReadPosRankSum=0.963;SB=-1.650e+02 GT:AD:DP:GQ:PL 0/1:32,54:86:99:401,0,300 chrXIV 600544 . A G 957 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=11;QD=10.75;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:990,120,0 chrXIV 600716 . G C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=15.83;MQ0=37;MQRankSum=0.433;QD=1.32;ReadPosRankSum=0.914;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:25,29:56:99:104,0,104 chrXIV 600749 . A G 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.49;MQ0=35;MQRankSum=1.173;QD=2.04;ReadPosRankSum=-0.107;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,29:56:99:144,0,143 chrXIV 600876 . A C 1987 filter AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=31.61;MQ0=10;QD=16.70;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2020,228,0 chrXIV 600928 . G C 1667.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;DP=183;Dels=0.00;FS=8.556;HaplotypeScore=20.6329;MLEAC=1;MLEAF=0.500;MQ=38.30;MQ0=16;MQRankSum=1.076;QD=9.11;ReadPosRankSum=0.005;SB=-9.850e+02 GT:AD:DP:GQ:PL 0/1:70,108:183:99:1697,0,674 chrXIV 600983 . G A 1902.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;DP=181;Dels=0.00;FS=0.647;HaplotypeScore=3.4581;MLEAC=1;MLEAF=0.500;MQ=37.46;MQ0=21;MQRankSum=0.970;QD=10.51;ReadPosRankSum=0.491;SB=-1.008e+03 GT:AD:DP:GQ:PL 0/1:65,116:181:99:1932,0,674 chrXIV 601031 . G T 875.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;DP=114;Dels=0.00;FS=4.020;HaplotypeScore=11.2542;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=36;MQRankSum=0.097;QD=7.68;ReadPosRankSum=1.506;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:33,80:114:99:905,0,222 chrXIV 601112 . T G 241 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=27;Dels=0.00;FS=6.368;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.05;MQ0=14;MQRankSum=1.203;QD=8.93;ReadPosRankSum=-0.668;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:30:274,30,0 chrXIV 601151 . G A 1523 filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=11;QD=15.23;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1556,174,0 chrXIV 601255 . A G 913 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=19;MQRankSum=-3.238;QD=10.74;ReadPosRankSum=3.292;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:946,108,0 chrXIV 601265 . A G 1018 filter AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=19;QD=13.39;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1051,117,0 chrXIV 601295 . C T 972 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=17;QD=11.17;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1005,120,0 chrXIV 601305 . G C 1124 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=16;QD=13.22;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1157,129,0 chrXIV 601361 . C T 728 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=21;QD=8.56;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:0,84:85:84:761,84,0 chrXIV 601364 . A G 691 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.668;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=20;MQRankSum=-2.800;QD=8.43;ReadPosRankSum=3.457;SB=-7.401e+01 GT:AD:DP:GQ:PL 1/1:5,76:82:84:724,84,0 chrXIV 601408 . C A 290.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;DP=79;Dels=0.00;FS=11.512;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=17;MQRankSum=2.278;QD=3.67;ReadPosRankSum=-3.505;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:51,26:79:99:320,0,429 chrXIV 601420 . T G 423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=77;Dels=0.00;FS=14.670;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=21.48;MQ0=17;MQRankSum=3.127;QD=5.49;ReadPosRankSum=-2.290;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:44,33:77:99:453,0,327 chrXIV 601426 . G A 269.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=74;Dels=0.00;FS=16.906;HaplotypeScore=5.6352;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=13;MQRankSum=-3.201;QD=3.64;ReadPosRankSum=0.591;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:35,39:74:99:299,0,485 chrXIV 601443 . A G 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284;DP=67;Dels=0.00;FS=13.836;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=8;MQRankSum=3.548;QD=8.93;ReadPosRankSum=3.515;SB=-3.849e+02 GT:AD:DP:GQ:PL 0/1:26,41:67:99:628,0,170 chrXIV 601465 . G A 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=3;MQRankSum=-1.547;QD=16.62;ReadPosRankSum=1.609;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1030,117,0 chrXIV 601501 . C T 693 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=4;QD=13.86;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:50:84:726,84,0 chrXIV 601519 . G A 512 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.234;DP=37;Dels=0.00;FS=13.103;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=6;MQRankSum=2.506;QD=13.84;ReadPosRankSum=1.503;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:6,31:37:66:545,66,0 chrXIV 601544 . T C 323 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=9;QD=9.50;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,32:34:42:356,42,0 chrXIV 601606 . G A 205.01 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=15;QD=5.13;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:27:238,27,0 chrXIV 601642 . T C 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=55;Dels=0.00;FS=2.614;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=11;MQRankSum=0.482;QD=5.55;ReadPosRankSum=3.109;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:17,37:55:78:335,0,78 chrXIV 601654 . C T 385.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.653;DP=60;Dels=0.00;FS=4.190;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=30.61;MQ0=9;MQRankSum=-1.129;QD=6.42;ReadPosRankSum=2.248;SB=-2.010e+02 GT:AD:DP:GQ:PL 0/1:21,39:60:99:415,0,135 chrXIV 601670 . G A 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;DP=68;Dels=0.00;FS=8.615;HaplotypeScore=4.9012;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=12;MQRankSum=2.200;QD=3.40;ReadPosRankSum=0.781;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:44,23:68:99:261,0,439 chrXIV 601727 . C T 501.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DP=67;Dels=0.00;FS=9.909;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=12;MQRankSum=0.268;QD=7.48;ReadPosRankSum=-0.563;SB=-1.700e+02 GT:AD:DP:GQ:PL 0/1:33,33:67:99:531,0,485 chrXIV 601742 . G A 1193 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=12;QD=18.08;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1226,135,0 chrXIV 601795 . T C 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.723;DP=75;Dels=0.00;FS=27.097;HaplotypeScore=7.1914;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=7;MQRankSum=1.343;QD=7.68;ReadPosRankSum=0.251;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,38:75:99:606,0,564 chrXIV 601856 . T G 1043 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=46.1723;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=6;MQRankSum=-0.881;QD=16.56;ReadPosRankSum=1.672;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1076,123,0 chrXIV 601884 . G C 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=66;Dels=0.00;FS=94.595;HaplotypeScore=5.6310;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=10;MQRankSum=-3.726;QD=1.21;ReadPosRankSum=0.105;SB=-2.902e+01 GT:AD:DP:GQ:PL 0/1:39,25:66:99:110,0,543 chrXIV 601944 . C T 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DP=71;Dels=0.00;FS=12.416;HaplotypeScore=4.1876;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=17;MQRankSum=-1.234;QD=0.52;ReadPosRankSum=-1.352;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:52,19:71:67:67,0,702 chrXIV 601975 . T C 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;DP=73;Dels=0.00;FS=1.492;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.92;MQ0=18;MQRankSum=-0.327;QD=0.97;ReadPosRankSum=0.228;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:54,19:73:99:101,0,757 chrXIV 602002 . C T 222.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;DP=76;Dels=0.00;FS=1.093;HaplotypeScore=4.2772;MLEAC=1;MLEAF=0.500;MQ=27.42;MQ0=16;MQRankSum=0.666;QD=2.92;ReadPosRankSum=0.353;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:50,26:76:99:252,0,554 chrXIV 602168 . A C 1431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.821;DP=122;Dels=0.00;FS=149.607;HaplotypeScore=10.8675;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=3;MQRankSum=5.121;QD=11.73;ReadPosRankSum=0.892;SB=-1.480e+02 GT:AD:DP:GQ:PL 0/1:47,75:122:99:1461,0,484 chrXIV 602218 . T G 394.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;DP=85;Dels=0.00;FS=221.657;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=36.84;MQ0=1;MQRankSum=-2.631;QD=4.64;ReadPosRankSum=-2.105;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,50:85:99:424,0,552 chrXIV 602249 . T G 645 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=8.06;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:78:678,78,0 chrXIV 602285 . G A 512.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=90;Dels=0.00;FS=199.250;HaplotypeScore=6.8106;MLEAC=1;MLEAF=0.500;MQ=30.51;MQ0=1;MQRankSum=5.447;QD=5.69;ReadPosRankSum=0.458;SB=-3.089e+00 GT:AD:DP:GQ:PL 0/1:55,35:90:14:542,0,14 chrXIV 602296 . A G 733 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2609;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=1;QD=8.62;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:87:766,87,0 chrXIV 602387 . T C 803.64 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.203;DP=65;Dels=0.00;FS=12.586;HaplotypeScore=21.3876;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=3;MQRankSum=2.532;QD=12.36;ReadPosRankSum=1.934;SB=-5.106e+02 GT:AD:DP:GQ:PL 1/1:11,53:65:11:836,11,0 chrXIV 602521 . C G 1484 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=16.13;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1517,180,0 chrXIV 602658 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=8.4660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.64;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1077,123,0 chrXIV 602860 . A T 2671 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.43;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2704,300,0 chrXIV 603709 . G A 3681.01 PASS AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.90;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,185:185:99:3681,402,0 chrXIV 603890 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.054;QD=15.60;ReadPosRankSum=1.661;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1546,177,0 chrXIV 604247 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.52;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1380,150,0 chrXIV 605752 . A G 326 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.11;SB=-6.930e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:359,42,0 chrXIV 605755 . T A 373 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.815;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-3.873;QD=14.35;ReadPosRankSum=3.815;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:7,19:26:45:406,45,0 chrXIV 605764 . A T 905 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=18.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:938,108,0 chrXIV 606035 . C T 51.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:84,9,0 chrXIV 606098 . T C 1628 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.85;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1661,186,0 chrXIV 606111 . C A 1659 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.99;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1692,186,0 chrXIV 606283 . T C 530 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:66:563,66,0 chrXIV 606438 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:96:866,96,0 chrXIV 606872 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.59;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2092,228,0 chrXIV 607236 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.17;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1536,168,0 chrXIV 607416 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.74;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2512,273,0 chrXIV 607455 . T C 2789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.668;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.358;QD=22.86;ReadPosRankSum=1.703;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2822,318,0 chrXIV 607581 . C T 2655 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.29;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2688,291,0 chrXIV 607599 . G A 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.0602;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.308;QD=20.86;ReadPosRankSum=1.697;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2140,220,0 chrXIV 607860 . C T 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=4.771;HaplotypeScore=5.1967;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.671;QD=19.84;ReadPosRankSum=-0.030;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2295,252,0 chrXIV 607902 . G A 2537 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=16.5300;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.52;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2570,279,0 chrXIV 607959 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.64;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2221,249,0 chrXIV 608001 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.93;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1833,204,0 chrXIV 608124 . T C 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.528;QD=16.86;ReadPosRankSum=1.651;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1483,168,0 chrXIV 608586 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=14.61;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1523,171,0 chrXIV 609093 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.87;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1373,159,0 chrXIV 609213 . G T 1022 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.77;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1055,117,0 chrXIV 609517 . T C 459 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.00;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:57:492,57,0 chrXIV 609573 . A G 1139 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1172,129,0 chrXIV 610323 . G A 901 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.9647;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.77;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:934,105,0 chrXIV 610512 . A C 800 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.51;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:96:833,96,0 chrXIV 610686 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.96;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1437,162,0 chrXIV 611020 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1562,177,0 chrXIV 611511 . C T 1789 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.10;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1822,195,0 chrXIV 611523 . G A 1917 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.61;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1950,213,0 chrXIV 611973 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.93;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1074,120,0 chrXIV 611974 . G A 1006 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.63;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1039,114,0 chrXIV 612031 . A T 1163 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.37;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1196,129,0 chrXIV 613268 . G A 2386 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.30;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2419,267,0 chrXIV 613373 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.04;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1918,210,0 chrXIV 613459 . A G 1805 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1838,207,0 chrXIV 614395 . C T 2479 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,113:118:99:2512,279,0 chrXIV 614496 . G A 2209 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.54;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2242,249,0 chrXIV 614937 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.322;QD=22.37;ReadPosRankSum=1.687;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1733,198,0 chrXIV 614988 . A T 1425 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.27;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1458,162,0 chrXIV 615001 . T G 1440 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.95;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1473,168,0 chrXIV 615141 . A T 1360 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.94;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1393,153,0 chrXIV 615305 . A C 1194 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.57;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:61:99:1227,141,0 chrXIV 615447 . T C 1428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.796;QD=19.04;ReadPosRankSum=1.685;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1461,165,0 chrXIV 615459 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.95;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1218,138,0 chrXIV 615483 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.60;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1335,150,0 chrXIV 615762 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-1.148;QD=21.40;ReadPosRankSum=1.693;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1938,216,0 chrXIV 616020 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.94;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1688,192,0 chrXIV 616158 . C A 1342 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9528;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=17.66;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1375,153,0 chrXIV 616166 . A G 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=82;Dels=0.00;FS=9.297;HaplotypeScore=3.9395;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;MQRankSum=0.291;QD=14.51;ReadPosRankSum=3.132;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:4,78:82:99:1223,138,0 chrXIV 616170 . T A 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9175;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=0.520;QD=13.70;ReadPosRankSum=1.689;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1170,132,0 chrXIV 616445 . G C 1515 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.93;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1548,177,0 chrXIV 616622 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.13;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1402,153,0 chrXIV 616663 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.55;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1350,156,0 chrXIV 617487 . A T 1537 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.77;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1570,183,0 chrXIV 618073 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.56;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1715,192,0 chrXIV 618287 . A C 1041 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.64;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1074,123,0 chrXIV 618448 . A G 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.625;DP=76;Dels=0.00;FS=2.357;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.293;QD=17.82;ReadPosRankSum=3.709;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:5,71:76:99:1387,162,0 chrXIV 618475 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.75;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1693,189,0 chrXIV 618548 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1583,171,0 chrXIV 618762 . T C 680 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.38;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:81:713,81,0 chrXIV 619110 . T A 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;DP=63;Dels=0.00;FS=4.046;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=0;MQRankSum=-2.903;QD=0.18;ReadPosRankSum=3.275;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:34,29:63:41:41,0,519 chrXIV 619113 . T A 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=61;Dels=0.00;FS=1.185;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.40;MQ0=0;MQRankSum=-3.841;QD=0.33;ReadPosRankSum=5.017;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:34,27:61:50:50,0,459 chrXIV 619117 . G T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=38.26;MQ0=0;MQRankSum=-1.810;QD=0.65;ReadPosRankSum=3.993;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:30,32:62:70:70,0,400 chrXIV 619135 . G C 128.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;DP=56;Dels=0.00;FS=1.240;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=35.14;MQ0=0;MQRankSum=-2.027;QD=2.29;ReadPosRankSum=-6.062;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:37,19:56:99:158,0,193 chrXIV 619714 . T C 1220 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.02;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1253,144,0 chrXIV 620041 . T C 2316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.797;QD=22.71;ReadPosRankSum=1.628;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2349,270,0 chrXIV 620369 . T G 1515 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=16.83;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,86:90:99:1548,180,0 chrXIV 620381 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.72;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1557,180,0 chrXIV 620528 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.90;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2055,237,0 chrXIV 620819 . G A 2040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=104;Dels=0.00;FS=3.011;HaplotypeScore=13.7688;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=2.233;QD=19.62;ReadPosRankSum=1.871;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2073,228,0 chrXIV 621080 . T C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=5.868;HaplotypeScore=6.7175;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.732;QD=16.93;ReadPosRankSum=1.639;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1929,222,0 chrXIV 621098 . T A 2120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=121;Dels=0.00;FS=11.238;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.320;QD=17.52;ReadPosRankSum=2.408;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,119:121:99:2153,240,0 chrXIV 621528 . T C 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=57;Dels=0.00;FS=3.076;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.065;QD=17.72;ReadPosRankSum=2.277;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1043,120,0 chrXIV 622219 . C T 1351 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.58;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1384,150,0 chrXIV 622639 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.36;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1612,189,0 chrXIV 622662 . A C 1341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=3.267;HaplotypeScore=82.0974;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=-1.215;QD=15.24;ReadPosRankSum=1.692;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1374,159,0 chrXIV 622973 . A G 2001 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.99;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2034,228,0 chrXIV 623097 . G T 1631 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.68;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1664,186,0 chrXIV 623557 . A G 2471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.2391;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-1.680;QD=18.44;ReadPosRankSum=1.680;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:1,133:134:99:2504,276,0 chrXIV 623559 . T A 2437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=3.391;HaplotypeScore=2.4504;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-1.732;QD=18.46;ReadPosRankSum=1.626;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2470,273,0 chrXIV 624096 . A G 1712 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.5363;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.14;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1745,201,0 chrXIV 624635 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.52;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1859,207,0 chrXIV 624946 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.10;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1956,213,0 chrXIV 625641 . T G 2024 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.00;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:2057,231,0 chrXIV 625861 . C T 1518 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1551,171,0 chrXIV 625904 . G T 1454 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1487,165,0 chrXIV 626052 . T C 1122 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1155,135,0 chrXIV 626480 . C G 1676 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1709,201,0 chrXIV 626600 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.00;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1839,210,0 chrXIV 627999 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.87;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1561,171,0 chrXIV 628490 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.26;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:823,96,0 chrXIV 628571 . A C 631 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:39:78:664,78,0 chrXIV 628716 . G A 372 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.78;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:45:405,45,0 chrXIV 628775 . A G 182.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=14.00;SB=-3.987e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:215,24,0 chrXIV 628801 . A T 127.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.89;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:160,18,0 chrXIV 628827 . T C 135.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.182;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.322;QD=11.26;ReadPosRankSum=2.041;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,10:12:21:168,21,0 chrXIV 628889 . T C 1078 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.50;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1111,126,0 chrXIV 629119 . A T 1739 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1772,198,0 chrXIV 629307 . A G 442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.267;QD=17.00;ReadPosRankSum=1.600;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:54:475,54,0 chrXIV 629464 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.11;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1772,213,0 chrXIV 630600 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.82;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1866,216,0 chrXIV 630961 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.76;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1276,141,0 chrXIV 631199 . G T 1062 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.67;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1095,123,0 chrXIV 631514 . T A 1028 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=15.58;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1061,117,0 chrXIV 631593 . A G 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.755;QD=19.10;ReadPosRankSum=1.644;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:90:797,90,0 chrXIV 631782 . G A 725 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=21.32;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:758,84,0 chrXIV 631792 . T C 683 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=20.09;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:716,81,0 chrXIV 632045 . A C 311.02 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=36.34;MQ0=0;QD=7.41;SB=3.97 GT:AD:DP:GQ:PL 1/1:0,19:42:39:344,39,0 chrXIV 632080 . G C 284.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=0;MQRankSum=1.855;QD=12.38;ReadPosRankSum=-1.295;SB=-1.767e+00 GT:AD:DP:GQ:PL 0/1:6,17:23:0:313,0,0 chrXIV 632098 . C A 284 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=14.20;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:36:317,36,0 chrXIV 632131 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=0.66;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:0,30:30:6:51,6,0 chrXIV 632192 . T G 634 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=0;MQRankSum=1.314;QD=10.93;ReadPosRankSum=1.673;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:1,57:58:75:667,75,0 chrXIV 632210 . T C 721 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=1;QD=11.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,60:61:87:754,87,0 chrXIV 632262 . A T 274 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.79;MQ0=1;QD=6.23;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:36:307,36,0 chrXIV 632268 . G T 377 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=1;QD=8.57;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:48:410,48,0 chrXIV 632350 . C T 1360 filter AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=19;QD=16.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:16,65:81:99:1393,156,0 chrXIV 633286 . G A 2008 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.50;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2041,222,0 chrXIV 633299 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.86;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1900,216,0 chrXIV 634104 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1349,144,0 chrXIV 634319 . T G 2008 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.59;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2041,228,0 chrXIV 634336 . C T 2143 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.22;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2176,246,0 chrXIV 635049 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.47;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1450,165,0 chrXIV 635247 . G C 1169 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.98;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1202,141,0 chrXIV 635324 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=14.50;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1077,120,0 chrXIV 635334 . T C 894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=67;Dels=0.00;FS=5.825;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.400;QD=13.34;ReadPosRankSum=1.679;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,64:67:99:927,105,0 chrXIV 635359 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5536;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=14.56;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:965,108,0 chrXIV 635465 . T G 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=67;Dels=0.00;FS=3.028;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.497;QD=20.33;ReadPosRankSum=2.376;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1395,156,0 chrXIV 635640 . C T 462 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.50;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:54:495,54,0 chrXIV 635687 . A C 447 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=14.42;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:480,57,0 chrXIV 635788 . C G 1485 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.34;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1518,168,0 chrXIV 635805 . T G 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=82;Dels=0.00;FS=3.869;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.332;QD=20.13;ReadPosRankSum=1.688;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,77:82:99:1684,192,0 chrXIV 635844 . T C 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=81;Dels=0.00;FS=7.616;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.989;QD=20.88;ReadPosRankSum=2.389;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1724,192,0 chrXIV 635919 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.73;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1457,159,0 chrXIV 636688 . G T 1268 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.93;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1301,147,0 chrXIV 636749 . T C 1264 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.06;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1297,144,0 chrXIV 636948 . T A 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=69;Dels=0.00;FS=2.890;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.780;QD=22.55;ReadPosRankSum=2.015;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1589,158,0 chrXIV 637234 . T A 1407 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.51;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1440,162,0 chrXIV 637450 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.50;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1113,126,0 chrXIV 638321 . G A 2142 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.31;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2175,240,0 chrXIV 639068 . A T 1772 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.85;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1805,195,0 chrXIV 639069 . G T 1782 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.96;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1815,198,0 chrXIV 639165 . T G 2182 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2215,246,0 chrXIV 639551 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.33;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2188,243,0 chrXIV 640247 . A T 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.498;QD=18.53;ReadPosRankSum=1.653;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1645,186,0 chrXIV 640431 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.60;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1545,174,0 chrXIV 640932 . T C 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.224;QD=21.28;ReadPosRankSum=1.686;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1629,186,0 chrXIV 641101 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.85;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2218,246,0 chrXIV 641452 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.127;QD=16.38;ReadPosRankSum=-1.479;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1376,165,0 chrXIV 641607 . A G 2484 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.43;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2517,282,0 chrXIV 641892 . A G 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=112;Dels=0.00;FS=10.687;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.009;QD=18.36;ReadPosRankSum=2.936;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:3,107:112:99:2089,237,0 chrXIV 642423 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.98;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1166,135,0 chrXIV 642812 . G C 1065 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.3094;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.73;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1098,123,0 chrXIV 643037 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.47;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2030,225,0 chrXIV 643121 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1618,183,0 chrXIV 643259 . C G 1927 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.41;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1960,228,0 chrXIV 643428 . A T 1778 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.72;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1811,198,0 chrXIV 643585 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.27;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2076,225,0 chrXIV 643599 . A G 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=6.708;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-1.103;QD=18.87;ReadPosRankSum=2.393;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1656,192,0 chrXIV 643797 . G C 1947 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.20;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1980,225,0 chrXIV 644010 . C T 875 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.51;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:908,99,0 chrXIV 645364 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1398,156,0 chrXIV 646157 . A T 1609 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2180;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1642,186,0 chrXIV 646547 . A C 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.828;QD=18.38;ReadPosRankSum=2.375;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1853,207,0 chrXIV 646786 . G T 1526 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=23.12;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1559,168,0 chrXIV 646799 . A G 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.619;QD=20.80;ReadPosRankSum=1.675;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1302,147,0 chrXIV 646869 . T G 1710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.355;QD=18.79;ReadPosRankSum=1.273;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1743,207,0 chrXIV 647124 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.67;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1213,138,0 chrXIV 647174 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=11.7284;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=16.24;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1251,138,0 chrXIV 647815 . G A 1782 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=16.65;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:1815,204,0 chrXIV 647821 . A G 1799 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.13;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1832,207,0 chrXIV 647950 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.80;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1556,171,0 chrXIV 648040 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.25;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1068,120,0 chrXIV 648085 . T C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.219;QD=18.41;ReadPosRankSum=1.692;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1635,189,0 chrXIV 648166 . T A 1738 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.45;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1771,195,0 chrXIV 648289 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.86;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1785,204,0 chrXIV 648473 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.64;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1444,156,0 chrXIV 648482 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=15.53;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1353,156,0 chrXIV 648754 . G A 1118 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=17.75;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1151,129,0 chrXIV 648908 . T C 2511 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.65;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2544,288,0 chrXIV 648982 . G A 3131 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=13.8382;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.53;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3164,351,0 chrXIV 649267 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.32;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2421,267,0 chrXIV 649796 . A T 1831 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.29;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1864,204,0 chrXIV 650114 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.31;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1238,135,0 chrXIV 650269 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1816,198,0 chrXIV 650366 . A C 1734 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1767,207,0 chrXIV 650441 . C A 1771 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.08;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1804,198,0 chrXIV 650501 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.26;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2244,258,0 chrXIV 650568 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.74;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,228,0 chrXIV 650627 . T C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.393;QD=18.53;ReadPosRankSum=1.694;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1738,198,0 chrXIV 650687 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2006,222,0 chrXIV 650816 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.62;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1629,177,0 chrXIV 650873 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.14;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1792,198,0 chrXIV 650921 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.52;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1770,201,0 chrXIV 650977 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.72;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1591,180,0 chrXIV 651098 . T C 2058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.242;QD=23.93;ReadPosRankSum=1.692;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:2091,234,0 chrXIV 651334 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.88;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1223,135,0 chrXIV 651361 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.21;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1475,168,0 chrXIV 651849 . C T 548 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=15.7010;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=14.42;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:581,69,0 chrXIV 651900 . A T 313 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=13.61;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:346,39,0 chrXIV 651906 . A G 322 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=14.00;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:42:355,42,0 chrXIV 651963 . G A 134.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.71;SB=-8.314e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:167,18,0 chrXIV 651964 . G A 135.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.76;SB=-8.514e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:168,18,0 chrXIV 652121 . G A 160.06 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=17.78;SB=-2.294e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:21:193,21,0 chrXIV 652238 . G A 155.06 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.51;SB=-1.079e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:188,21,0 chrXIV 652261 . C T 240 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=15.00;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:273,30,0 chrXIV 652265 . T G 378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-1.733;QD=14.00;ReadPosRankSum=1.348;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:1,26:27:32:411,32,0 chrXIV 652419 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.42;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1562,180,0 chrXIV 652476 . G A 1240 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.97;MQ0=0;QD=22.96;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1273,141,0 chrXIV 652628 . T C 980 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.22;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1013,111,0 chrXIV 652651 . A T 1204 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.42;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1237,135,0 chrXIV 653385 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.63;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:932,105,0 chrXIV 653525 . G A 885 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.29;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:918,102,0 chrXIV 653557 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.35;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1641,183,0 chrXIV 653635 . T C 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.512;DP=70;Dels=0.00;FS=11.057;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.437;QD=19.13;ReadPosRankSum=3.603;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:5,65:70:99:1372,156,0 chrXIV 653665 . C T 1692 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.63;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1725,189,0 chrXIV 654088 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.99;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2027,228,0 chrXIV 654203 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2462;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.29;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2174,234,0 chrXIV 654490 . A G 1001 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.076;QD=18.54;ReadPosRankSum=2.870;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:99:1034,117,0 chrXIV 654646 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=10.5724;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.00;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1073,117,0 chrXIV 654835 . T C 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.853;QD=19.63;ReadPosRankSum=1.681;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1348,156,0 chrXIV 654862 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.54;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1611,177,0 chrXIV 654949 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.93;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1634,180,0 chrXIV 655138 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.00;SB=-1.532e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2739,303,0 chrXIV 655174 . T C 2524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0106;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.577;QD=21.57;ReadPosRankSum=1.703;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2557,291,0 chrXIV 655315 . A G 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.682;QD=17.04;ReadPosRankSum=1.662;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1720,195,0 chrXIV 655324 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=16.60;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1942,219,0 chrXIV 655865 . T G 1862 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.02;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1895,213,0 chrXIV 655873 . A T 1734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.793;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.514;QD=19.05;ReadPosRankSum=1.656;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1767,195,0 chrXIV 655918 . A T 1506 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.82;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1539,168,0 chrXIV 656020 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.37;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2149,249,0 chrXIV 656134 . A G 1510 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.88;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1543,174,0 chrXIV 656419 . G A 1493 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.18;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1526,168,0 chrXIV 656425 . G C 1306 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.14;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1339,150,0 chrXIV 656773 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.151;QD=19.43;ReadPosRankSum=1.619;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1821,213,0 chrXIV 656962 . A T 2341 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.51;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2374,261,0 chrXIV 657202 . C A 1956 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.16;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1989,219,0 chrXIV 657220 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.39;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1872,204,0 chrXIV 657606 . A C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.793;QD=19.78;ReadPosRankSum=1.181;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:2,68:72:99:1457,165,0 chrXIV 657871 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.3209;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.30;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2374,261,0 chrXIV 657913 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.9733;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.99;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2056,225,0 chrXIV 657946 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.31;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1908,213,0 chrXIV 658252 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=87;Dels=0.00;FS=6.159;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.128;QD=19.38;ReadPosRankSum=2.919;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1719,201,0 chrXIV 658306 . T A 2027 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.52;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2060,222,0 chrXIV 658444 . C A 1748 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1781,201,0 chrXIV 658552 . A G 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.745;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.577;QD=18.82;ReadPosRankSum=1.655;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1727,201,0 chrXIV 658624 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.74;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1713,189,0 chrXIV 658675 . C T 1243 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.57;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1276,144,0 chrXIV 658677 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.73;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1271,138,0 chrXIV 658861 . C T 2287 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.37;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2320,261,0 chrXIV 658915 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.420;QD=21.46;ReadPosRankSum=1.698;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2243,258,0 chrXIV 659022 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.81;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1816,201,0 chrXIV 659350 . A G 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.064;QD=19.23;ReadPosRankSum=1.690;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1629,186,0 chrXIV 659362 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.72;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1788,195,0 chrXIV 659467 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.05;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2238,252,0 chrXIV 659794 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.43;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1897,213,0 chrXIV 659821 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.72;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1964,219,0 chrXIV 659869 . C T 1453 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.12;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1486,165,0 chrXIV 659878 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=17.27;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1311,141,0 chrXIV 660538 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=16.16;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1487,174,0 chrXIV 660562 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=12.42;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1225,141,0 chrXIV 661117 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.3277;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.00;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1311,144,0 chrXIV 661734 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=1;QD=18.93;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:904,99,0 chrXIV 661735 . G A 864 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=1;QD=18.78;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:897,99,0 chrXIV 661887 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.76;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1341,156,0 chrXIV 661923 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=14.44;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:957,111,0 chrXIV 661928 . G C 1086 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.21;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1119,126,0 chrXIV 662512 . C A 1011 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=20.63;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1044,114,0 chrXIV 662536 . T A 944 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=17.48;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:977,108,0 chrXIV 662537 . G A 960 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=16.84;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:993,111,0 chrXIV 662542 . C T 1000 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=15.87;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1033,114,0 chrXIV 662586 . A G 947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.054;QD=14.13;ReadPosRankSum=1.678;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:1,63:67:99:980,114,0 chrXIV 662883 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.2453;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=18.99;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1514,165,0 chrXIV 662978 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.99;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1685,192,0 chrXIV 662982 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.68;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1602,183,0 chrXIV 663416 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.19;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1487,171,0 chrXIV 664095 . A G 980 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=65.8275;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.740;QD=12.89;ReadPosRankSum=2.351;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:2,73:76:99:1013,117,0 chrXIV 664499 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.62;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1813,207,0 chrXIV 664650 . G A 2732 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2477;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.21;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2765,306,0 chrXIV 664887 . A G 922 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.18;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:955,108,0 chrXIV 664923 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.08;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1077,120,0 chrXIV 664998 . A C 1506 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=14.48;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1539,171,0 chrXIV 665001 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=14.22;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1540,165,0 chrXIV 665017 . C G 1347 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=13.47;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1380,162,0 chrXIV 665036 . G T 1004 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;QD=10.14;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1037,120,0 chrXIV 665056 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=13.82;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1042,120,0 chrXIV 665064 . T A 1027 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=14.26;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1060,117,0 chrXIV 665097 . T A 1283 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.11;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1316,144,0 chrXIV 665503 . C T 847 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=14.12;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:880,102,0 chrXIV 665506 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=14.03;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:917,105,0 chrXIV 665577 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.48;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1287,144,0 chrXIV 665889 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.98;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1272,138,0 chrXIV 665899 . T C 821 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.47;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:854,99,0 chrXIV 665953 . C G 740 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=12.98;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:773,90,0 chrXIV 665969 . A C 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.641;QD=12.83;ReadPosRankSum=1.687;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1021,117,0 chrXIV 667018 . C T 988 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=13.17;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1021,120,0 chrXIV 667216 . C T 1073 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=5.7938;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1106,126,0 chrXIV 667292 . G A 535 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.72;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:63:568,63,0 chrXIV 667485 . A G 1125 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1158,135,0 chrXIV 667515 . C A 807 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:93:840,93,0 chrXIV 667530 . T A 778 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:96:811,96,0 chrXIV 667685 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.20;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1447,165,0 chrXIV 667737 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.69;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1726,189,0 chrXIV 667749 . C T 2015 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.99;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2048,225,0 chrXIV 667971 . T A 1904 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.04;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1937,207,0 chrXIV 668126 . T C 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.855;HaplotypeScore=52.0378;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=-0.472;QD=12.09;ReadPosRankSum=1.642;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:964,108,0 chrXIV 668179 . T C 931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=6.463;HaplotypeScore=7.7588;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.726;QD=14.78;ReadPosRankSum=1.509;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:964,108,0 chrXIV 668237 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.72;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2055,228,0 chrXIV 668321 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.3457;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=22.74;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,100:103:99:2375,261,0 chrXIV 668876 . G A 1090 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.4292;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.12;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1123,123,0 chrXIV 669030 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1400,159,0 chrXIV 669093 . G A 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DP=61;Dels=0.00;FS=3.310;HaplotypeScore=10.1038;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.559;QD=18.49;ReadPosRankSum=1.213;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1161,126,0 chrXIV 669563 . A G 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.645;QD=17.86;ReadPosRankSum=1.664;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:944,108,0 chrXIV 669924 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.12;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1934,210,0 chrXIV 669930 . A G 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;MQRankSum=-0.454;QD=19.60;ReadPosRankSum=1.691;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1679,192,0 chrXIV 669943 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.380;QD=17.16;ReadPosRankSum=1.690;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1440,168,0 chrXIV 669967 . A C 1153 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.01;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1186,135,0 chrXIV 670017 . G T 1453 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=15.14;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1486,168,0 chrXIV 670369 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.35;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1722,195,0 chrXIV 670370 . A G 1648 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=85;Dels=0.00;FS=3.445;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.454;QD=19.39;ReadPosRankSum=1.650;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1681,189,0 chrXIV 670615 . C A 1745 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.06;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1778,192,0 chrXIV 671139 . A T 1155 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.50;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1188,132,0 chrXIV 671188 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.58;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1325,150,0 chrXIV 671317 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1855,210,0 chrXIV 671629 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.36;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1967,219,0 chrXIV 671826 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.23;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1989,216,0 chrXIV 672220 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.012;QD=19.33;ReadPosRankSum=1.687;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1560,177,0 chrXIV 672239 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=17.67;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1199,132,0 chrXIV 672281 . T C 715 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=15.21;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:748,87,0 chrXIV 672334 . G T 1032 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.47;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1065,120,0 chrXIV 672756 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.06;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1457,162,0 chrXIV 672773 . G T 1634 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2988;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.68;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1667,183,0 chrXIV 673093 . G A 2727 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.31;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2760,303,0 chrXIV 673124 . A C 2178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=108;Dels=0.00;FS=10.323;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.217;QD=20.17;ReadPosRankSum=2.934;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:3,104:108:99:2211,252,0 chrXIV 673268 . T G 1977 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.03;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2010,234,0 chrXIV 673326 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.57;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1816,198,0 chrXIV 673486 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.48;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2488,273,0 chrXIV 673496 . C T 2290 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.17;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2323,258,0 chrXIV 673518 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.17;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2471,273,0 chrXIV 673610 . G A 2556 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=16.6613;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.66;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2589,282,0 chrXIV 673678 . A G 1604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.220;QD=17.82;ReadPosRankSum=0.905;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1637,192,0 chrXIV 673700 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.44;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1600,180,0 chrXIV 673832 . A G 1470 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.34;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1503,177,0 chrXIV 674108 . A G 1598 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.51;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1631,186,0 chrXIV 674132 . C T 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=4.424;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.588;QD=21.29;ReadPosRankSum=1.492;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1566,174,0 chrXIV 674165 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5288;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.52;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1181,135,0 chrXIV 674180 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.74;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1186,132,0 chrXIV 674309 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.35;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1871,216,0 chrXIV 674338 . G C 1799 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.77;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1832,213,0 chrXIV 674407 . T C 2225 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1628;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.25;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2258,255,0 chrXIV 674483 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.69;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1734,189,0 chrXIV 674892 . T C 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.551;QD=21.85;ReadPosRankSum=1.705;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2873,321,0 chrXIV 674949 . A G 1074 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=14.71;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1107,126,0 chrXIV 674958 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.5793;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=14.68;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1119,123,0 chrXIV 675224 . G C 1964 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.5232;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.02;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:1997,225,0 chrXIV 675270 . A T 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.816;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.859;QD=20.03;ReadPosRankSum=2.925;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1896,207,0 chrXIV 675306 . C T 1463 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.77;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1496,168,0 chrXIV 675462 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.05;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1336,147,0 chrXIV 675522 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.98;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1732,192,0 chrXIV 675567 . G A 1323 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1356,150,0 chrXIV 675781 . A G 911 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.38;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:944,108,0 chrXIV 675845 . C G 504 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=14.40;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,34:35:60:537,60,0 chrXIV 675859 . A G 552 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.92;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:66:585,66,0 chrXIV 676029 . T G 602 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.817;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.5006;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.182;QD=12.29;ReadPosRankSum=0.375;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:2,41:49:72:635,72,0 chrXIV 676173 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:995,114,0 chrXIV 676368 . A G 1509 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.22;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1542,174,0 chrXIV 676834 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.44;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1491,168,0 chrXIV 676917 . A C 1522 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.85;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1555,174,0 chrXIV 677581 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.47;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1858,204,0 chrXIV 677649 . C G 1416 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.82;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1449,162,0 chrXIV 677702 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.63;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1539,168,0 chrXIV 677730 . T G 1299 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.68;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1332,156,0 chrXIV 677799 . A G 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.32;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1293,153,0 chrXIV 677841 . A G 1056 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.56;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1089,126,0 chrXIV 678311 . C T 441 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.25;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:54:474,54,0 chrXIV 679026 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.54;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1756,198,0 chrXIV 679089 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.18;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1910,210,0 chrXIV 679168 . G A 3080 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.00;SB=-1.694e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:3113,348,0 chrXIV 679220 . C T 2315 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.79;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2348,258,0 chrXIV 679227 . A G 2039 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.88;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2072,243,0 chrXIV 679461 . T A 2485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=14.0812;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.318;QD=19.57;ReadPosRankSum=2.294;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2518,279,0 chrXIV 679554 . T C 2498 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.8570;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.64;SB=-1.414e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2531,282,0 chrXIV 679605 . C G 2359 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.43;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2392,273,0 chrXIV 679917 . A T 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.118;DP=104;Dels=0.00;FS=7.332;HaplotypeScore=7.8544;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.249;QD=18.71;ReadPosRankSum=2.331;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,102:104:99:1979,222,0 chrXIV 679995 . T C 1729 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.45;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1762,201,0 chrXIV 680044 . A G 2125 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.8816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2158,246,0 chrXIV 680099 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1857,201,0 chrXIV 680172 . C T 1140 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.52;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1173,129,0 chrXIV 680268 . A C 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.462;QD=20.49;ReadPosRankSum=1.687;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1611,180,0 chrXIV 680376 . A G 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.818;QD=18.34;ReadPosRankSum=1.694;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1702,195,0 chrXIV 680435 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.53;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1400,159,0 chrXIV 681186 . A G 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.359;QD=19.89;ReadPosRankSum=2.406;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2281,258,0 chrXIV 681312 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.48;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1988,225,0 chrXIV 681720 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2126;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.69;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1848,213,0 chrXIV 682434 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.91;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1725,198,0 chrXIV 682518 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.74;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1251,138,0 chrXIV 682580 . A T 1385 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.97;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1418,156,0 chrXIV 682590 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.12;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1421,156,0 chrXIV 682893 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.8752;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.82;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1843,201,0 chrXIV 683193 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1407,156,0 chrXIV 683256 . A C 1025 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.71;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1058,123,0 chrXIV 683709 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.06;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1114,126,0 chrXIV 684041 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1743,192,0 chrXIV 684087 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.84;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1234,141,0 chrXIV 684656 . A G 1816 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=17.98;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,97:101:99:1849,207,0 chrXIV 684669 . A G 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=6.154;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-0.286;QD=19.86;ReadPosRankSum=2.350;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1999,237,0 chrXIV 684891 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.50;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1437,165,0 chrXIV 684966 . A G 1904 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.16;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1937,222,0 chrXIV 685065 . A T 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=2.694;HaplotypeScore=6.6981;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.565;QD=18.02;ReadPosRankSum=2.392;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1583,174,0 chrXIV 685071 . A C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.3321;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.713;QD=14.90;ReadPosRankSum=1.569;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1314,147,0 chrXIV 685080 . C G 1267 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=15.84;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1300,147,0 chrXIV 685203 . C T 1522 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.42;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1555,171,0 chrXIV 685773 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.83;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1679,192,0 chrXIV 686126 . T C 2015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=3.279;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.143;QD=19.75;ReadPosRankSum=1.697;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2048,231,0 chrXIV 686348 . A C 2438 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.16;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:2471,276,0 chrXIV 686681 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.63;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2117,246,0 chrXIV 686786 . T C 2537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.255;QD=18.65;ReadPosRankSum=1.656;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:1,135:136:99:2570,300,0 chrXIV 686798 . T C 2300 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.039;QD=17.69;ReadPosRankSum=1.705;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:1,129:130:99:2333,264,0 chrXIV 687249 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=14.25;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1244,138,0 chrXIV 687406 . G C 1513 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.25;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1546,177,0 chrXIV 687661 . G A 2402 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.71;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2435,270,0 chrXIV 687788 . G A 2481 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.39;SB=-1.472e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2514,270,0 chrXIV 687829 . A G 2038 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.05;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2071,240,0 chrXIV 687853 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.52;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2083,234,0 chrXIV 687913 . T A 2002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.6689;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.470;QD=16.68;ReadPosRankSum=1.116;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2035,225,0 chrXIV 688572 . C G 2338 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9907;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.25;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2371,267,0 chrXIV 689057 . A G 1399 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=75;Dels=0.00;FS=5.069;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.681;QD=18.65;ReadPosRankSum=3.335;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:4,70:75:99:1432,162,0 chrXIV 689582 . C G 2162 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.62;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2195,243,0 chrXIV 689791 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.89;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1892,216,0 chrXIV 689914 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=13.18;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1114,126,0 chrXIV 689944 . C G 1212 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=14.09;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1245,138,0 chrXIV 689964 . A C 1566 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=15.50;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1599,183,0 chrXIV 690162 . T G 1109 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1142,132,0 chrXIV 690208 . T A 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.610;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.509;QD=21.79;ReadPosRankSum=1.621;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1384,150,0 chrXIV 690310 . T C 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1268;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.258;QD=23.23;ReadPosRankSum=1.695;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2240,258,0 chrXIV 690707 . A T 1984 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.37;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2017,222,0 chrXIV 691471 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=6.1996;MLEAC=2;MLEAF=1.00;MQ=60.88;MQ0=0;QD=21.39;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1081,126,0 chrXIV 691593 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.97;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1549,168,0 chrXIV 691738 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.38;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1439,162,0 chrXIV 691748 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.21;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1454,159,0 chrXIV 691842 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.19;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1587,174,0 chrXIV 692612 . C T 2439 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.01;FS=0.000;HaplotypeScore=12.8307;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.58;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2472,273,0 chrXIV 692704 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.86;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1869,216,0 chrXIV 692864 . A G 3110 PASS AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.19;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,171:171:99:3143,351,0 chrXIV 693607 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.45;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1272,141,0 chrXIV 693748 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.32;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1760,195,0 chrXIV 693964 . C T 777 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.86;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:810,93,0 chrXIV 694134 . G A 765 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5554;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=15.00;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:87:798,87,0 chrXIV 694158 . T A 1254 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.29;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1287,138,0 chrXIV 694183 . G C 1152 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.58;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1185,132,0 chrXIV 694273 . T C 1157 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.449;QD=24.62;ReadPosRankSum=2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:47:99:1190,135,0 chrXIV 694332 . G C 1883 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1916,207,0 chrXIV 694337 . A G 1821 filter AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1854,207,0 chrXIV 694347 . G C 1673 filter AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1706,192,0 chrXIV 694712 . G C 1111 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=13.72;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1144,129,0 chrXIV 694868 . C T 1049 filter AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1082,120,0 chrXIV 695563 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.2452;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=19.86;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2158,231,0 chrXIV 695572 . A G 1749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=108;Dels=0.00;FS=18.828;HaplotypeScore=3.1055;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.217;QD=16.19;ReadPosRankSum=2.840;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:3,104:108:99:1782,204,0 chrXIV 695585 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.84;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1700,189,0 chrXIV 695662 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.274;QD=19.88;ReadPosRankSum=1.672;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1186,132,0 chrXIV 695748 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.14;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2007,228,0 chrXIV 695861 . T C 1234 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-1.534;QD=17.63;ReadPosRankSum=1.683;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1267,141,0 chrXIV 695864 . C T 1175 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.32;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1208,138,0 chrXIV 695927 . T C 1553 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.52;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1586,183,0 chrXIV 695952 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.41;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1704,189,0 chrXIV 696037 . C G 1285 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.06;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1318,147,0 chrXIV 696194 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.73;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1558,171,0 chrXIV 696302 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.36;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1112,123,0 chrXIV 696344 . A G 1168 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.63;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1201,135,0 chrXIV 696372 . C T 870 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.71;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:903,99,0 chrXIV 696443 . T A 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=7.6089;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.693;QD=21.90;ReadPosRankSum=1.675;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1347,150,0 chrXIV 697132 . A C 1603 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.58;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1636,183,0 chrXIV 697709 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1429,159,0 chrXIV 697791 . T A 2364 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.658;DP=115;Dels=0.00;FS=5.913;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.798;QD=20.56;ReadPosRankSum=2.922;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,112:115:99:2397,273,0 chrXIV 697917 . C T 2670 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.53;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2703,294,0 chrXIV 698238 . C T 2597 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.13;SB=-1.524e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2630,291,0 chrXIV 698660 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.70;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1753,192,0 chrXIV 698753 . A G 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=91;Dels=0.00;FS=9.245;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.474;QD=19.77;ReadPosRankSum=3.301;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:4,87:91:99:1832,207,0 chrXIV 699152 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.7960;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.83;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2178,243,0 chrXIV 699950 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.12;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1625,183,0 chrXIV 700166 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.50;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2432,270,0 chrXIV 700262 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.52;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1792,204,0 chrXIV 700307 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.30;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1577,177,0 chrXIV 700328 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.30;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1442,162,0 chrXIV 700405 . T A 1603 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.43;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1636,183,0 chrXIV 700427 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.907;QD=16.13;ReadPosRankSum=3.205;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:4,95:99:99:1630,186,0 chrXIV 700775 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.04;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1461,162,0 chrXIV 701168 . A G 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=6.555;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.055;QD=20.63;ReadPosRankSum=2.385;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1601,186,0 chrXIV 701450 . T C 899 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.24;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:932,105,0 chrXIV 701567 . T A 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.838;QD=18.97;ReadPosRankSum=1.509;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1797,207,0 chrXIV 701618 . G T 1881 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=20.23;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1914,213,0 chrXIV 701689 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.66;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1959,225,0 chrXIV 702035 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8045;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.40;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2039,237,0 chrXIV 702206 . C T 2271 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.7387;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.92;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2304,252,0 chrXIV 702404 . A C 2121 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6096;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.09;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2154,246,0 chrXIV 702483 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.57;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1755,195,0 chrXIV 702719 . T C 2689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.845;QD=21.51;ReadPosRankSum=1.677;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2722,318,0 chrXIV 702909 . A G 1243 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.03;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1276,144,0 chrXIV 702947 . A T 1143 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.06;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1176,129,0 chrXIV 702991 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.2931;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.07;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1262,144,0 chrXIV 703043 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.50;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2220,246,0 chrXIV 703080 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.9471;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.26;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2156,237,0 chrXIV 703250 . C T 974 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.38;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1007,111,0 chrXIV 703315 . A G 679 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=15.43;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:81:712,81,0 chrXIV 703322 . C T 596 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=14.19;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:629,72,0 chrXIV 703323 . C A 631 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=14.67;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:664,75,0 chrXIV 703330 . C T 541 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=11.76;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:66:574,66,0 chrXIV 703355 . C G 571 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=10.77;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:69:604,69,0 chrXIV 703361 . G A 601 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=10.54;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:69:634,69,0 chrXIV 703454 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.63;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1564,180,0 chrXIV 703536 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.26;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1691,186,0 chrXIV 703603 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.12;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1620,183,0 chrXIV 703674 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8752;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.71;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2236,255,0 chrXIV 703883 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=19.82;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1777,192,0 chrXIV 703902 . G C 1792 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=18.47;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,93:97:99:1825,213,0 chrXIV 703949 . G C 2247 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=15.9008;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.77;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,132:134:99:2280,264,0 chrXIV 704007 . A C 2823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;DP=150;Dels=0.00;FS=2.361;HaplotypeScore=8.2235;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.439;QD=18.82;ReadPosRankSum=0.547;SB=-1.536e+03 GT:AD:DP:GQ:PL 1/1:3,146:150:99:2856,290,0 chrXIV 704114 . C G 2707 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.76;SB=-1.800e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2740,306,0 chrXIV 704155 . G A 2504 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=16.58;SB=-1.559e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2537,270,0 chrXIV 704268 . T C 99.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.969;DP=69;Dels=0.00;FS=35.873;HaplotypeScore=39.2364;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;MQRankSum=0.724;QD=1.44;ReadPosRankSum=-4.204;SB=-3.843e+02 GT:AD:DP:GQ:PL 1/1:26,43:69:15:132,15,0 chrXIV 704275 . C T 254.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;DP=90;Dels=0.00;FS=20.847;HaplotypeScore=66.7040;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-0.093;QD=2.83;ReadPosRankSum=-2.550;SB=-6.993e+02 GT:AD:DP:GQ:PL 1/1:26,64:90:14:287,14,0 chrXIV 704280 . C T 316.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=70.6097;MLEAC=1;MLEAF=0.500;MQ=32.15;MQ0=0;MQRankSum=-1.687;QD=2.90;ReadPosRankSum=3.409;SB=-8.110e+02 GT:AD:DP:GQ:PL 0/1:22,87:109:42:346,0,42 chrXIV 704295 . T A,C 683.98 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.071;DP=163;Dels=0.00;FS=39.161;HaplotypeScore=43.2649;MLEAC=1,1;MLEAF=0.500,0.500;MQ=36.68;MQ0=0;MQRankSum=-0.025;QD=4.20;ReadPosRankSum=5.539;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/2:33,29,101:163:33:743,629,614,114,0,33 chrXIV 704297 . C T 519.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;DP=182;Dels=0.00;FS=1.185;HaplotypeScore=106.8872;MLEAC=1;MLEAF=0.500;MQ=37.40;MQ0=0;MQRankSum=-3.984;QD=2.85;ReadPosRankSum=6.082;SB=-8.490e+02 GT:AD:DP:GQ:PL 0/1:78,104:182:99:549,0,254 chrXIV 704322 . T C 802.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;DP=293;Dels=0.00;FS=0.000;HaplotypeScore=23.8353;MLEAC=1;MLEAF=0.500;MQ=42.53;MQ0=0;MQRankSum=-4.330;QD=2.74;ReadPosRankSum=3.129;SB=-1.489e+03 GT:AD:DP:GQ:PL 0/1:126,165:293:99:832,0,1480 chrXIV 704325 . G T 800.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.385;DP=304;Dels=0.00;FS=3.880;HaplotypeScore=27.8524;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-4.798;QD=2.63;ReadPosRankSum=1.325;SB=-1.226e+03 GT:AD:DP:GQ:PL 0/1:126,178:304:99:830,0,1436 chrXIV 704382 . A G 151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-10.003;DP=515;Dels=0.00;FS=2.535;HaplotypeScore=45.9410;MLEAC=1;MLEAF=0.500;MQ=47.25;MQ0=0;MQRankSum=-1.646;QD=0.29;ReadPosRankSum=0.790;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:427,88:515:99:181,0,5660 chrXIV 704408 . T C 252.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.080;DP=442;Dels=0.00;FS=2.641;HaplotypeScore=88.3929;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=0;MQRankSum=-2.359;QD=0.57;ReadPosRankSum=4.108;SB=-4.150e+02 GT:AD:DP:GQ:PL 0/1:356,85:442:99:282,0,4912 chrXIV 704444 . A T 5391.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=312;Dels=0.00;FS=7.882;HaplotypeScore=15.6069;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.012;QD=17.28;ReadPosRankSum=2.386;SB=-2.730e+03 GT:AD:DP:GQ:PL 1/1:2,309:312:99:5391,594,0 chrXIV 704448 . T C 778.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.344;DP=295;Dels=0.00;FS=2.773;HaplotypeScore=16.9941;MLEAC=1;MLEAF=0.500;MQ=47.71;MQ0=0;MQRankSum=-4.230;QD=2.64;ReadPosRankSum=-1.404;SB=-5.640e+02 GT:AD:DP:GQ:PL 0/1:189,101:295:99:808,0,2818 chrXIV 704472 . G T 2621 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=14.89;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:2654,297,0 chrXIV 704495 . C A 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.764;DP=118;Dels=0.00;FS=43.021;HaplotypeScore=7.7937;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=2.028;QD=13.05;ReadPosRankSum=3.873;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:9,109:118:99:1573,156,0 chrXIV 704514 . A G 682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=92;Dels=0.00;FS=12.229;HaplotypeScore=10.4623;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;MQRankSum=-1.319;QD=7.41;ReadPosRankSum=2.347;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:2,70:92:84:715,84,0 chrXIV 704531 . G T 220.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.619;DP=77;Dels=0.00;FS=115.541;HaplotypeScore=57.8302;MLEAC=1;MLEAF=0.500;MQ=30.45;MQ0=0;MQRankSum=2.874;QD=2.86;ReadPosRankSum=-6.325;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:36,41:77:99:250,0,117 chrXIV 704532 . T C 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;DP=77;Dels=0.00;FS=44.476;HaplotypeScore=57.8302;MLEAC=1;MLEAF=0.500;MQ=30.45;MQ0=0;MQRankSum=1.108;QD=0.30;ReadPosRankSum=4.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,23:77:53:53,0,306 chrXIV 704537 . A C 11.34 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=43;Dels=0.00;FS=11.165;HaplotypeScore=15.7686;MLEAC=1;MLEAF=0.500;MQ=27.17;MQ0=0;MQRankSum=-0.998;QD=0.26;ReadPosRankSum=2.346;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:41:41,0,113 chrXIV 704544 . T C 221.05 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=13.7336;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=0;QD=4.81;SB=-2.771e+02 GT:AD:DP:GQ:PL 1/1:0,35:46:30:254,30,0 chrXIV 704547 . T A 202.42 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;DP=46;Dels=0.00;FS=10.518;HaplotypeScore=19.4889;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=0;MQRankSum=3.126;QD=4.40;ReadPosRankSum=-3.290;SB=-2.944e+02 GT:AD:DP:GQ:PL 0/1:10,35:46:7:232,0,7 chrXIV 704548 . G T 257 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=16.5254;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=5.59;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:46:33:290,33,0 chrXIV 704553 . C T 312.04 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;DP=63;Dels=0.02;FS=19.174;HaplotypeScore=18.5099;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=0;MQRankSum=2.593;QD=4.95;ReadPosRankSum=-3.531;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:10,52:62:23:345,23,0 chrXIV 704556 . C G 315 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=19.5014;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=4.85;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:64:42:348,42,0 chrXIV 704559 . T A 437 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.220;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=16.5786;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=-0.512;QD=6.15;ReadPosRankSum=1.049;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:54:470,54,0 chrXIV 704562 . C T 404 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.660;DP=85;Dels=0.00;FS=2.595;HaplotypeScore=17.1569;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=1.247;QD=4.75;ReadPosRankSum=-1.658;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:35:437,35,0 chrXIV 704565 . T A 458 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=18.9328;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=-1.594;QD=5.39;ReadPosRankSum=1.640;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,74:85:57:491,57,0 chrXIV 704569 . T C 405.17 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.212;DP=84;Dels=0.00;FS=18.772;HaplotypeScore=15.8441;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;MQRankSum=1.392;QD=4.82;ReadPosRankSum=-0.066;SB=-7.372e+02 GT:AD:DP:GQ:PL 1/1:11,73:84:17:438,17,0 chrXIV 704572 . T A 433 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=14.8309;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=0;QD=5.15;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:54:466,54,0 chrXIV 704573 . A T 371.10 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.8392;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=0.071;QD=4.42;ReadPosRankSum=1.685;SB=-7.611e+02 GT:AD:DP:GQ:PL 1/1:1,72:84:45:404,45,0 chrXIV 704577 . A G 537 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.5674;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;MQRankSum=-1.358;QD=4.97;ReadPosRankSum=2.357;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:2,104:108:69:570,69,0 chrXIV 704582 . C T 616.05 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.516;DP=109;Dels=0.00;FS=18.124;HaplotypeScore=9.7522;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;MQRankSum=2.751;QD=5.65;ReadPosRankSum=3.043;SB=-9.169e+02 GT:AD:DP:GQ:PL 1/1:11,98:109:22:649,22,0 chrXIV 704583 . T C 588 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=110;Dels=0.00;FS=15.422;HaplotypeScore=9.7522;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=3.123;QD=5.35;ReadPosRankSum=2.756;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:11,99:110:38:621,38,0 chrXIV 704694 . A G 2859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=148;Dels=0.00;FS=2.926;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.174;QD=19.32;ReadPosRankSum=2.367;SB=-1.587e+03 GT:AD:DP:GQ:PL 1/1:2,146:148:99:2892,330,0 chrXIV 704786 . T C 2922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=199;Dels=0.00;FS=2.727;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=1.660;QD=14.68;ReadPosRankSum=1.648;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:2,195:199:99:2955,326,0 chrXIV 704844 . C T 3142 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=17.85;SB=-1.607e+03 GT:AD:DP:GQ:PL 1/1:0,173:176:99:3175,363,0 chrXIV 705005 . C A 2465 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.21;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2498,276,0 chrXIV 705045 . A G 2487 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.08;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2520,291,0 chrXIV 705111 . G A 2772 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.5861;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.69;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2805,312,0 chrXIV 705188 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1232;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=14.76;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1583,174,0 chrXIV 705191 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=14.51;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,104:106:99:1571,174,0 chrXIV 705204 . G A 1389 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=13.23;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1422,165,0 chrXIV 705208 . A T 1444 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=13.75;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1477,162,0 chrXIV 705221 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=12.23;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1256,138,0 chrXIV 705227 . T A 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.043;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;MQRankSum=0.682;QD=12.72;ReadPosRankSum=1.697;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1305,147,0 chrXIV 705315 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.72;SB=-1.790e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:2873,318,0 chrXIV 705401 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.4683;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.01;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1819,207,0 chrXIV 705451 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.96;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2458,267,0 chrXIV 705452 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=145;Dels=0.00;FS=2.648;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.879;QD=15.97;ReadPosRankSum=2.364;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:2,142:145:99:2348,267,0 chrXIV 705531 . A G 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=8.056;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=0.076;QD=14.19;ReadPosRankSum=2.406;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:1651,189,0 chrXIV 705551 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=15.18;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1733,195,0 chrXIV 705568 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;QD=11.73;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1429,165,0 chrXIV 705570 . C A 1531 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.25;MQ0=0;QD=13.20;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1564,177,0 chrXIV 705599 . T C 1913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=148;Dels=0.00;FS=2.530;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;MQRankSum=-1.320;QD=12.93;ReadPosRankSum=2.939;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,145:148:99:1946,225,0 chrXIV 705631 . A G 2259 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=14.30;SB=-1.612e+03 GT:AD:DP:GQ:PL 1/1:0,157:158:99:2292,264,0 chrXIV 705671 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=15.74;SB=-1.485e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:1953,222,0 chrXIV 705870 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=16.26;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2374,270,0 chrXIV 706438 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.288;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.713;QD=21.57;ReadPosRankSum=1.664;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2233,249,0 chrXIV 706542 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.43;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1821,201,0 chrXIV 706575 . A T 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=104;Dels=0.00;FS=2.922;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.438;QD=20.66;ReadPosRankSum=2.331;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2182,240,0 chrXIV 706720 . T C 2221 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=118;Dels=0.00;FS=5.996;HaplotypeScore=10.2615;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.855;QD=18.82;ReadPosRankSum=2.941;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:3,115:118:99:2254,255,0 chrXIV 706775 . A G 2326 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.38;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2359,264,0 chrXIV 706990 . A C 1431 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=18.83;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1464,168,0 chrXIV 707000 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=17.59;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1458,159,0 chrXIV 707011 . G C 1403 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.70;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1436,162,0 chrXIV 707187 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.7634;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.56;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1926,213,0 chrXIV 707316 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.08;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1303,144,0 chrXIV 707332 . T C 1389 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=16.34;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1422,162,0 chrXIV 707352 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.22;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1445,156,0 chrXIV 707593 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=13.9076;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.69;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1678,183,0 chrXIV 707734 . G A 2237 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.80;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2270,264,0 chrXIV 707760 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=15.68;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1570,177,0 chrXIV 707765 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.37;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1570,183,0 chrXIV 708561 . C G 2353 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9401;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.98;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2386,270,0 chrXIV 708694 . G A 2771 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.8269;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.94;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2804,321,0 chrXIV 708768 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.05;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2012,222,0 chrXIV 708870 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6697;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.99;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1792,195,0 chrXIV 709011 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=129;Dels=0.00;FS=3.045;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.405;QD=18.31;ReadPosRankSum=1.705;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2395,267,0 chrXIV 709059 . T C 2669 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.3969;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.52;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2702,306,0 chrXIV 709119 . G T 1832 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.13;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1865,204,0 chrXIV 709317 . C T 1830 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.94;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1863,207,0 chrXIV 709593 . C A 1247 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=15.99;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1280,144,0 chrXIV 709675 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.07;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1463,162,0 chrXIV 709827 . A G 923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=55;Dels=0.00;FS=2.847;HaplotypeScore=5.7826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.607;QD=16.78;ReadPosRankSum=2.360;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:956,114,0 chrXIV 709906 . T C 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=58;Dels=0.00;FS=8.987;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.243;QD=18.72;ReadPosRankSum=3.207;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:4,54:58:99:1119,126,0 chrXIV 709959 . T C 1434 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.477;QD=21.09;ReadPosRankSum=1.681;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1467,168,0 chrXIV 710347 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.92;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1263,141,0 chrXIV 710457 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.92;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1330,144,0 chrXIV 710466 . T C 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.017;QD=19.71;ReadPosRankSum=1.677;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1275,144,0 chrXIV 710643 . C A 1336 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=16.29;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1369,156,0 chrXIV 710751 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.39;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1705,192,0 chrXIV 710913 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.98;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1094,126,0 chrXIV 711012 . T C 1475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.176;QD=18.21;ReadPosRankSum=1.604;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1508,174,0 chrXIV 711951 . G A 2778 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.84;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2811,312,0 chrXIV 711992 . A G 2744 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.29;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,149:150:99:2777,315,0 chrXIV 712253 . A G 2438 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.6316;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.20;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2471,291,0 chrXIV 712295 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.353;QD=18.83;ReadPosRankSum=1.697;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1878,213,0 chrXIV 712301 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.57;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:99:99:1772,204,0 chrXIV 712325 . C T 1058 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=13.06;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1091,126,0 chrXIV 712361 . C T 1704 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.75;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1737,195,0 chrXIV 712490 . A G 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.845;QD=22.09;ReadPosRankSum=1.675;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2728,309,0 chrXIV 712520 . T A 2624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=8.014;HaplotypeScore=7.0802;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.359;QD=21.87;ReadPosRankSum=2.388;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2657,288,0 chrXIV 712550 . C A 2396 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.48;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2429,276,0 chrXIV 712646 . T C 2759 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.74;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2792,315,0 chrXIV 712844 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.82;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2352,270,0 chrXIV 713149 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1575,174,0 chrXIV 713514 . A G 1254 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1287,147,0 chrXIV 713654 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.87;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1062,123,0 chrXIV 713685 . T G 1147 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.80;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1180,135,0 chrXIV 713775 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.35;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1783,195,0 chrXIV 713826 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.30;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1594,183,0 chrXIV 714025 . C A 2966 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.11;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2999,333,0 chrXIV 714672 . C G 1874 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.12;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1907,219,0 chrXIV 715430 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.933;QD=23.20;ReadPosRankSum=1.694;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2144,252,0 chrXIV 715972 . A G 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=3.041;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.559;QD=18.44;ReadPosRankSum=2.373;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1213,141,0 chrXIV 716055 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.37;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1062,120,0 chrXIV 716316 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.96;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:69:620,69,0 chrXIV 716325 . G A 754 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.18;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:787,87,0 chrXIV 716522 . T C 258 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.50;SB=-7.698e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:33:291,33,0 chrXIV 716564 . G A 237 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.75;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:30:270,30,0 chrXIV 716912 . T C 524 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:63:557,63,0 chrXIV 716972 . A G 683 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.34;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:716,81,0 chrXIV 716990 . C T 545 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.17;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:578,63,0 chrXIV 717023 . A G 476 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.04;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:509,60,0 chrXIV 717134 . A G 1192 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1225,144,0 chrXIV 717218 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1273,141,0 chrXIV 717305 . T C 1406 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.63;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1439,165,0 chrXIV 717379 . T C 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.967;QD=17.47;ReadPosRankSum=1.687;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1378,156,0 chrXIV 717380 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=18.51;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1458,165,0 chrXIV 717528 . T A 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2178,237,0 chrXIV 717731 . C A 1234 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.28;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1267,138,0 chrXIV 717904 . A G 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.682;QD=18.76;ReadPosRankSum=1.697;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,98:101:99:1928,216,0 chrXIV 718496 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=17.06;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1517,171,0 chrXIV 718667 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=23.44;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1697,186,0 chrXIV 718741 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.43;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1769,204,0 chrXIV 719201 . A C 1071 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.47;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1104,123,0 chrXIV 719272 . A G 913 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;MQRankSum=-1.172;QD=13.23;ReadPosRankSum=1.681;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:946,111,0 chrXIV 719281 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=12.89;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1000,114,0 chrXIV 719586 . G A 686 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=14.91;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:81:719,81,0 chrXIV 719595 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.74;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:920,99,0 chrXIV 719790 . C T 3059 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.85;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3092,342,0 chrXIV 719815 . A G 2103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.212;QD=21.03;ReadPosRankSum=1.697;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2136,243,0 chrXIV 719946 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.06;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1638,186,0 chrXIV 719952 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=20.75;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1714,198,0 chrXIV 720135 . T C 2382 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.06;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2415,276,0 chrXIV 720381 . T C 457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.726;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.9032;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;MQRankSum=2.094;QD=4.23;ReadPosRankSum=7.691;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:61,46:108:57:490,57,0 chrXIV 720405 . C T 182.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;DP=103;Dels=0.00;FS=1.987;HaplotypeScore=3.9140;MLEAC=1;MLEAF=0.500;MQ=39.79;MQ0=0;MQRankSum=-2.131;QD=1.77;ReadPosRankSum=-7.471;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:76,27:103:99:212,0,162 chrXIV 720527 . T G 1378 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.41;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1411,162,0 chrXIV 720829 . A G 954 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=47;Dels=0.00;FS=2.667;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.326;QD=20.30;ReadPosRankSum=2.851;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:3,44:47:99:987,114,0 chrXIV 720905 . C T 741 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.03;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:84:774,84,0 chrXIV 721369 . T C 1080 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.00;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1113,126,0 chrXIV 721603 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=16.41;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1083,126,0 chrXIV 721777 . G T 1133 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.88;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1166,129,0 chrXIV 721832 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.28;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1075,120,0 chrXIV 721842 . T G 1013 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.09;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1046,120,0 chrXIV 721994 . A G 691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.280;DP=31;Dels=0.00;FS=4.914;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=1.174;QD=22.29;ReadPosRankSum=-0.056;SB=-2.010e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:81:724,81,0 chrXIV 722023 . G A 646 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=18.46;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:679,75,0 chrXIV 722036 . G A 645 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=18.43;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:678,75,0 chrXIV 722083 . G T 390 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=13.93;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:48:423,48,0 chrXIV 722345 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.03;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1415,159,0 chrXIV 722690 . A G 1569 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.83;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1602,186,0 chrXIV 722746 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.2359;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.35;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1508,168,0 chrXIV 723395 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1206,135,0 chrXIV 723495 . C T 1034 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.54;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1067,117,0 chrXIV 723580 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.72;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1670,183,0 chrXIV 723593 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.41;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1625,177,0 chrXIV 723962 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4002;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.43;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1157,132,0 chrXIV 724322 . T C 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.601;QD=22.08;ReadPosRankSum=1.662;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,48:51:99:1159,129,0 chrXIV 724364 . A G 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=40;Dels=0.00;FS=3.468;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.866;QD=21.85;ReadPosRankSum=1.473;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:907,102,0 chrXIV 724425 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.05;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:909,105,0 chrXIV 724486 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.019;QD=21.22;ReadPosRankSum=1.681;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1497,171,0 chrXIV 724531 . T G 1619 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.16;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1652,186,0 chrXIV 724673 . A T 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=69;Dels=0.00;FS=5.039;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.853;QD=12.49;ReadPosRankSum=1.629;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:895,99,0 chrXIV 724686 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=16.79;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1158,132,0 chrXIV 724916 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.29;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1727,192,0 chrXIV 725093 . C G 1280 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.39;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1313,147,0 chrXIV 725113 . T A 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=7.469;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.801;QD=14.90;ReadPosRankSum=1.474;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1046,117,0 chrXIV 725142 . T C 1403 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.96;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1436,162,0 chrXIV 725181 . G T 1615 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.00;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1648,189,0 chrXIV 725367 . A G 1001 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.56;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1034,120,0 chrXIV 725458 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.21;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1306,150,0 chrXIV 725809 . C T 730 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=16.59;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:763,84,0 chrXIV 725820 . T C 710 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=5.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.083;QD=16.51;ReadPosRankSum=1.568;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:84:743,84,0 chrXIV 725867 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=19.19;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:954,108,0 chrXIV 725883 . A C 985 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.31;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1018,114,0 chrXIV 725988 . C T 2208 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=18.40;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2241,243,0 chrXIV 726052 . G A 1779 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;QD=22.52;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1812,201,0 chrXIV 726053 . C T 1766 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=22.64;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1799,201,0 chrXIV 726058 . A C 1653 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;MQRankSum=-1.584;QD=23.61;ReadPosRankSum=1.633;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1686,192,0 chrXIV 726111 . C G 596 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.55;MQ0=0;QD=20.55;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:629,75,0 chrXIV 726114 . G A 644 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;QD=23.00;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:75:677,75,0 chrXIV 726235 . G A 374 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=13.85;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:45:407,45,0 chrXIV 726237 . T C 350 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=12.96;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,25:27:45:383,45,0 chrXIV 726242 . C T 373 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=14.92;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:45:406,45,0 chrXIV 726943 . A T 76.51 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=1.37;SB=-1.975e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:12:109,12,0 chrXIV 726992 . T C 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=2.659;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;MQRankSum=-1.545;QD=15.01;ReadPosRankSum=2.400;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1504,171,0 chrXIV 727102 . G A 910 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=15.96;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:943,108,0 chrXIV 727111 . G A 808 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=17.57;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:841,93,0 chrXIV 727112 . G A 893 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=19.41;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:926,102,0 chrXIV 727151 . G A 721 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=15.34;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:754,84,0 chrXIV 727265 . C G 756 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=16.80;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:789,90,0 chrXIV 727273 . G A 747 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.23;MQ0=0;QD=16.60;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:780,90,0 chrXIV 727466 . G A 424 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=13.25;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:51:457,51,0 chrXIV 727505 . T C 837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=-0.558;QD=14.19;ReadPosRankSum=1.674;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,58:59:99:870,102,0 chrXIV 727584 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.99;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1880,207,0 chrXIV 727650 . A T 1529 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=24.66;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1562,174,0 chrXIV 727684 . T C 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.021;QD=20.35;ReadPosRankSum=2.822;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:3,48:51:99:1071,123,0 chrXIV 727708 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=17.92;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:929,102,0 chrXIV 727725 . T C 674 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=15.67;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:707,81,0 chrXIV 727758 . G A 733 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=13.09;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:766,90,0 chrXIV 727765 . T C 725 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=12.50;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:90:758,90,0 chrXIV 727778 . A G 949 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=67;Dels=0.00;FS=3.010;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-0.472;QD=14.16;ReadPosRankSum=1.575;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:95:982,95,0 chrXIV 727814 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.29;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1859,204,0 chrXIV 727862 . C T 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.332;DP=104;Dels=0.00;FS=3.358;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.167;QD=20.37;ReadPosRankSum=1.266;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2152,227,0 chrXIV 727930 . A G 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-1.274;QD=16.84;ReadPosRankSum=2.048;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:3,104:107:99:1835,189,0 chrXIV 727944 . G C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;DP=101;Dels=0.00;FS=3.188;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;MQRankSum=-0.416;QD=16.70;ReadPosRankSum=1.351;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1720,175,0 chrXIV 727951 . C T 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.212;DP=100;Dels=0.00;FS=3.279;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-1.143;QD=17.09;ReadPosRankSum=1.663;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1742,168,0 chrXIV 727970 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6953;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.40;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1342,156,0 chrXIV 728021 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=19.94;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1748,201,0 chrXIV 728182 . T C 1251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.215;QD=18.67;ReadPosRankSum=-1.681;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1284,150,0 chrXIV 728185 . C A 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-1.466;QD=19.71;ReadPosRankSum=-1.572;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1334,147,0 chrXIV 728255 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.68;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1589,180,0 chrXIV 728276 . T A 1952 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7474;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=20.99;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1985,213,0 chrXIV 730789 . A G 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.578;QD=23.64;ReadPosRankSum=1.644;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:955,108,0 chrXIV 731247 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.37;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1495,165,0 chrXIV 731735 . T C 2027 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.27;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2060,237,0 chrXIV 731846 . T C 1659 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.52;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1692,195,0 chrXIV 732158 . A C 2263 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.0145;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.95;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2296,258,0 chrXIV 732590 . C G 1880 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.61;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1913,219,0 chrXIV 732677 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.40;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1665,186,0 chrXIV 732854 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.58;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1510,171,0 chrXIV 732856 . A C 1444 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=16.79;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1477,171,0 chrXIV 732887 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.557;QD=17.08;ReadPosRankSum=1.672;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:1,114:115:99:1997,222,0 chrXIV 733142 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.03;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1876,210,0 chrXIV 733258 . A C 161.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=95.8114;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.532;QD=1.53;ReadPosRankSum=1.699;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:24:194,24,0 chrXIV 733303 . T A 1981 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.21;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2014,225,0 chrXIV 733411 . T G 1514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=76;Dels=0.00;FS=2.597;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.535;QD=19.92;ReadPosRankSum=2.905;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:3,72:76:99:1547,180,0 chrXIV 733695 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.99;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1894,216,0 chrXIV 734073 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.89;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1374,147,0 chrXIV 734296 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1718,186,0 chrXIV 734387 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.08;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1700,195,0 chrXIV 734395 . T G 1573 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.73;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1606,186,0 chrXIV 734440 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.67;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1588,174,0 chrXIV 734519 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.96;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1379,150,0 chrXIV 734746 . G A 2692 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.07;SB=-1.326e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2725,300,0 chrXIV 734887 . C T 2854 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3219;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.62;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2887,321,0 chrXIV 734975 . A G 2360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=5.257;HaplotypeScore=10.1835;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.366;QD=22.48;ReadPosRankSum=1.666;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:2393,276,0 chrXIV 735047 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.15;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2390,267,0 chrXIV 735112 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5187;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.91;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2075,240,0 chrXIV 735174 . A G 2769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=151;Dels=0.00;FS=2.707;HaplotypeScore=8.8346;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.516;QD=18.34;ReadPosRankSum=2.368;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:2,149:151:99:2802,327,0 chrXIV 735440 . A G 2412 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=123;Dels=0.00;FS=3.191;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.619;QD=19.61;ReadPosRankSum=-0.380;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2445,276,0 chrXIV 735759 . C T 2824 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.61;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2857,321,0 chrXIV 735817 . A G 3227.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=156;Dels=0.00;FS=9.092;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=49.93;MQ0=0;MQRankSum=-2.035;QD=20.69;ReadPosRankSum=3.403;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:4,152:156:99:3260,378,0 chrXIV 735834 . A T 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.065;QD=21.71;ReadPosRankSum=1.550;SB=-1.712e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2942,324,0 chrXIV 735856 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=20.77;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2338,261,0 chrXIV 735889 . C T 1334 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=15.69;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1367,153,0 chrXIV 735893 . G A 1087 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=14.69;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1120,126,0 chrXIV 736014 . C T 927 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=16.55;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:960,114,0 chrXIV 736035 . C A 1310 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.85;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1343,150,0 chrXIV 736065 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.94;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1624,186,0 chrXIV 736111 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.0540;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.76;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2130,237,0 chrXIV 736153 . A C 1558 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=15.74;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1591,180,0 chrXIV 736251 . T C 843 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=12.97;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:876,99,0 chrXIV 736287 . T C 569 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=8.89;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:69:602,69,0 chrXIV 736290 . G C 568 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=8.87;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:69:601,69,0 chrXIV 736291 . C G 531 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;QD=8.30;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:66:564,66,0 chrXIV 736308 . T C 787 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=10.36;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:93:820,93,0 chrXIV 736327 . T A 978 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=12.87;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1011,114,0 chrXIV 736429 . C T 2228 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.054;QD=24.22;ReadPosRankSum=1.694;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2261,249,0 chrXIV 736458 . G A 1636 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.71;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1669,186,0 chrXIV 736460 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.33;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1554,177,0 chrXIV 736686 . C T 2398 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.41;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2431,264,0 chrXIV 736739 . A G 1653 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.22;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1686,186,0 chrXIV 736767 . T A 1637 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=21.54;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1670,183,0 chrXIV 736790 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=17.39;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1546,180,0 chrXIV 736802 . A T 1406 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=15.45;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1439,165,0 chrXIV 736859 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=15.2074;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=15.92;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1689,192,0 chrXIV 736950 . G C 2050 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.13;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2083,231,0 chrXIV 737054 . G T 1384 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.66;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1417,159,0 chrXIV 737061 . A G 1507 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.16;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1540,171,0 chrXIV 737126 . A C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.370;QD=18.25;ReadPosRankSum=1.681;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1292,147,0 chrXIV 737156 . C T 1627 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.41;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1660,180,0 chrXIV 737202 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.014;QD=19.57;ReadPosRankSum=1.690;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1677,195,0 chrXIV 737420 . A T 1209 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.39;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1242,138,0 chrXIV 737636 . C T 1029 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=16.08;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1062,120,0 chrXIV 737792 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.03;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1442,162,0 chrXIV 737846 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.20;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1325,150,0 chrXIV 737861 . T C 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.732;QD=19.28;ReadPosRankSum=1.626;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1286,150,0 chrXIV 737900 . A G 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.153;QD=18.57;ReadPosRankSum=1.579;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1296,127,0 chrXIV 737930 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.78;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1612,186,0 chrXIV 738000 . C A 1079 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.40;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1112,123,0 chrXIV 738020 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=15.88;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1081,123,0 chrXIV 738023 . A C 1020 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=15.22;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1053,120,0 chrXIV 738132 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.22;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1347,153,0 chrXIV 738251 . A T 1139 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.34;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1172,129,0 chrXIV 738340 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=23.60;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1614,174,0 chrXIV 738443 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.29;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1587,180,0 chrXIV 738533 . C T 795 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.07;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:828,93,0 chrXIV 738536 . G A 836 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=19.44;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:869,96,0 chrXIV 738545 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.04;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:863,96,0 chrXIV 738554 . T G 775 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.02;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:808,93,0 chrXIV 738591 . A G 716 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=15.23;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:749,84,0 chrXIV 738603 . T C 841 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=15.87;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:874,96,0 chrXIV 738607 . A C 830 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=15.37;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:863,96,0 chrXIV 738645 . C G 1198 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=15.56;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1231,138,0 chrXIV 738646 . G C 1154 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=14.99;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1187,138,0 chrXIV 738651 . C A 1313 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=15.45;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1346,150,0 chrXIV 738674 . T A 1226 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6545;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=15.32;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1259,141,0 chrXIV 738697 . C A 1119 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=14.72;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1152,132,0 chrXIV 738707 . C A 985 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.28;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1018,111,0 chrXIV 738758 . T A 759 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.97;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:792,87,0 chrXIV 738775 . C T 825 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.62;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:858,93,0 chrXIV 738859 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.2759;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.00;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1529,168,0 chrXIV 738960 . A G 1644 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.63;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1677,189,0 chrXIV 739015 . T C 1872 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.83;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1905,213,0 chrXIV 739084 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.43;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1259,150,0 chrXIV 739126 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.598;QD=21.33;ReadPosRankSum=-1.228;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1206,138,0 chrXIV 739357 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.47;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1609,174,0 chrXIV 739568 . T C 1409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.713;QD=20.72;ReadPosRankSum=1.681;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1442,168,0 chrXIV 739896 . C T 2700 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.08;SB=-1.394e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2733,300,0 chrXIV 740385 . A T 2234 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.34;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2267,246,0 chrXIV 740460 . C T 2643 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.02;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2676,312,0 chrXIV 740592 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.31;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1752,192,0 chrXIV 740598 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.52;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1737,192,0 chrXIV 740980 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=17.75;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1329,144,0 chrXIV 740985 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=14.99;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1322,144,0 chrXIV 741004 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=15.59;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1530,174,0 chrXIV 741144 . C T 2251 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.24;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2284,252,0 chrXIV 741249 . G C 1221 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.20;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1254,144,0 chrXIV 741378 . G C 1826 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=17.23;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,102:106:99:1859,210,0 chrXIV 741432 . A G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.603;QD=20.24;ReadPosRankSum=1.693;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1834,207,0 chrXIV 741663 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.15;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2004,225,0 chrXIV 742014 . T A 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.903;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.551;QD=20.43;ReadPosRankSum=2.374;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1361,150,0 chrXIV 742015 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.88;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1325,150,0 chrXIV 742180 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.80;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1971,219,0 chrXIV 742206 . T C 1720 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.98;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1753,195,0 chrXIV 742217 . G C 1496 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.81;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1529,177,0 chrXIV 742451 . A G 1507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=72;Dels=0.00;FS=5.950;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.578;QD=20.93;ReadPosRankSum=2.846;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1540,171,0 chrXIV 742485 . T C 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.736;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.444;QD=22.31;ReadPosRankSum=1.688;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1773,198,0 chrXIV 742517 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=17.43;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,128:129:99:2281,258,0 chrXIV 742540 . G A 2564 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=16.98;SB=-1.952e+03 GT:AD:DP:GQ:PL 1/1:0,150:151:99:2597,288,0 chrXIV 742544 . G C 2514 PASS AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=15.91;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,158:158:99:2547,285,0 chrXIV 742656 . G A 2891 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.74;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2924,318,0 chrXIV 742699 . C G 1642 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.27;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1675,192,0 chrXIV 742721 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.28;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2128,234,0 chrXIV 742802 . A T 2435 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.02;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2468,279,0 chrXIV 742817 . G A 2859 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.66;SB=-1.706e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2892,318,0 chrXIV 742847 . C T 2603 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.72;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2636,297,0 chrXIV 743034 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.36;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1853,210,0 chrXIV 743053 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=16.40;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1411,153,0 chrXIV 743089 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.31;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1764,195,0 chrXIV 743137 . T C 2406 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.39;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2439,282,0 chrXIV 743160 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.425;QD=18.29;ReadPosRankSum=1.704;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:1,124:126:99:2338,261,0 chrXIV 743177 . C T 2136 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.80;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2169,237,0 chrXIV 743262 . C A 2503 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.30;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2536,279,0 chrXIV 743408 . A G 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-1.732;QD=18.25;ReadPosRankSum=1.685;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1365,159,0 chrXIV 743430 . A G 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-1.582;QD=16.67;ReadPosRankSum=1.682;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1183,141,0 chrXIV 743434 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=17.92;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1305,150,0 chrXIV 743441 . T G 1239 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=17.96;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1272,147,0 chrXIV 743679 . G C 983 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.27;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1016,114,0 chrXIV 743709 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=15.89;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1050,120,0 chrXIV 743736 . C A 1298 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=19.97;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1331,156,0 chrXIV 743766 . A C 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;MQRankSum=0.325;QD=17.69;ReadPosRankSum=-0.650;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1165,144,0 chrXIV 743791 . C T 656 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=16.00;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:41:87:689,87,0 chrXIV 743793 . G A 644 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=0;QD=16.95;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:677,87,0 chrXIV 743834 . T C 426 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.32;MQ0=0;QD=14.20;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:459,54,0 chrXIV 743855 . C T 630 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=14.00;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:72:663,72,0 chrXIV 743856 . A G 611 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=13.89;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:644,72,0 chrXIV 743863 . A G 692 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.13;MQ0=0;QD=13.06;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:81:725,81,0 chrXIV 743877 . A G 720 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;QD=13.33;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:84:753,84,0 chrXIV 743903 . G A 625 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=13.30;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:72:658,72,0 chrXIV 743905 . C A 630 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=13.12;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:72:663,72,0 chrXIV 743970 . C A 473 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=0;QD=13.51;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:506,57,0 chrXIV 744001 . A C 459 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=13.50;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:492,57,0 chrXIV 744011 . T C 487 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=13.91;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:60:520,60,0 chrXIV 744023 . C T 390 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=10.83;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:423,51,0 chrXIV 744031 . T G 431 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;QD=12.68;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:464,57,0 chrXIV 744101 . G A 473 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=17.52;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:506,63,0 chrXIV 744105 . G A 443 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=14.29;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:60:476,60,0 chrXIV 744115 . G A 423 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=13.65;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:456,54,0 chrXIV 744147 . A G 543 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=13.57;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:69:576,69,0 chrXIV 744175 . A G 769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;MQRankSum=1.613;QD=13.26;ReadPosRankSum=1.673;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:93:802,93,0 chrXIV 744183 . G A 855 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=14.02;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:888,99,0 chrXIV 744202 . T A 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=45.52;MQ0=0;MQRankSum=-1.626;QD=14.17;ReadPosRankSum=1.679;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:954,108,0 chrXIV 744238 . A G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=9.939;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;MQRankSum=-0.309;QD=15.94;ReadPosRankSum=2.377;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1117,126,0 chrXIV 744305 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.40;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:929,105,0 chrXIV 744345 . T C 695 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.78;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:728,84,0 chrXIV 744347 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.03;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:756,87,0 chrXIV 744471 . T C 1093 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.18;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1126,129,0 chrXIV 744819 . T A 1105 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.05;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1138,126,0 chrXIV 744823 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.38;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1154,126,0 chrXIV 744887 . T C 688 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=14.04;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:81:721,81,0 chrXIV 745002 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.06;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1423,159,0 chrXIV 745289 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.81;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1558,171,0 chrXIV 745341 . C T 672 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=14.30;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:705,78,0 chrXIV 745342 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=13.77;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:680,78,0 chrXIV 745494 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.613;QD=17.17;ReadPosRankSum=1.673;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1029,117,0 chrXIV 745524 . A G 1165 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.20;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1198,141,0 chrXIV 745595 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.42;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:1083,129,0 chrXIV 745867 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.62;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1300,144,0 chrXIV 745944 . A C 1277 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=23.22;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1310,150,0 chrXIV 746230 . T C 611 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=11.53;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:75:644,75,0 chrXIV 746238 . A G 520 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=10.40;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:553,63,0 chrXIV 746245 . T G 464 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=8.92;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:57:497,57,0 chrXIV 746254 . T G 427 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.28;MQ0=0;QD=7.91;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:54:460,54,0 chrXIV 746277 . G A 238 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=28.9952;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=5.41;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:30:271,30,0 chrXIV 746338 . G T 363 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=9.55;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:45:396,45,0 chrXIV 746361 . C T 517 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;QD=12.02;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:550,60,0 chrXIV 746386 . G A 611 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.64;MQ0=0;QD=13.28;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:72:644,72,0 chrXIV 746416 . G C 385 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=9.17;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:48:418,48,0 chrXIV 746422 . A G 392 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.82;MQ0=0;QD=8.71;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:51:425,51,0 chrXIV 746431 . A G 483 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=10.50;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:60:516,60,0 chrXIV 746539 . G A 1046 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=20.51;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1079,126,0 chrXIV 746557 . A C 947 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=18.94;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:980,114,0 chrXIV 746569 . C G 866 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=21.65;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:899,105,0 chrXIV 746594 . C T 626 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=17.39;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:659,75,0 chrXIV 746613 . C T 881 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=17.98;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:914,102,0 chrXIV 746653 . G A 1114 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.54;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1147,129,0 chrXIV 746722 . A G 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=1.604;QD=18.80;ReadPosRankSum=1.668;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1048,120,0 chrXIV 746741 . G A 870 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=16.42;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:903,99,0 chrXIV 746746 . C T 790 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=14.36;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:823,93,0 chrXIV 746866 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.68;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1530,171,0 chrXIV 746926 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.75;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1338,150,0 chrXIV 746951 . A G 1121 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.00;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1154,129,0 chrXIV 746952 . T C 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=62;Dels=0.00;FS=2.641;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=0.183;QD=18.50;ReadPosRankSum=2.752;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:3,59:62:99:1180,132,0 chrXIV 747081 . A G 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.404;QD=20.44;ReadPosRankSum=1.639;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1566,183,0 chrXIV 747209 . T A 1474 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=18.20;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1507,165,0 chrXIV 747212 . T C 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=3.055;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.869;QD=18.36;ReadPosRankSum=2.387;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1465,165,0 chrXIV 747242 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=17.60;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1300,144,0 chrXIV 747250 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.176;QD=14.23;ReadPosRankSum=1.632;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1029,117,0 chrXIV 747258 . A G 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=71;Dels=0.00;FS=7.155;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=0.300;QD=13.92;ReadPosRankSum=2.380;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:2,68:71:99:1021,117,0 chrXIV 747434 . A C 1409 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=19.57;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1442,162,0 chrXIV 747437 . T A 1405 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=18.73;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,162,0 chrXIV 747443 . T C 1335 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.909;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.140;QD=16.90;ReadPosRankSum=2.388;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1368,156,0 chrXIV 747445 . C T 1320 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.30;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1353,153,0 chrXIV 747531 . A G 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.605;QD=19.29;ReadPosRankSum=1.690;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1634,189,0 chrXIV 747684 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.13;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2091,231,0 chrXIV 747711 . C A 1649 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.92;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1682,195,0 chrXIV 747725 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=17.67;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1570,174,0 chrXIV 747858 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2896;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.924;QD=18.21;ReadPosRankSum=1.694;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1672,189,0 chrXIV 747936 . A G 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.195;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=0.000;QD=20.69;ReadPosRankSum=1.696;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:2061,240,0 chrXIV 748118 . T C 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=12.9527;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.759;QD=18.58;ReadPosRankSum=1.693;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1742,198,0 chrXIV 748253 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.97;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2010,219,0 chrXIV 748773 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.2520;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.54;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1980,222,0 chrXIV 748858 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.62;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1992,228,0 chrXIV 748885 . T G 1781 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.71;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1814,204,0 chrXIV 748937 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.96;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1739,198,0 chrXIV 749042 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.74;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1738,204,0 chrXIV 749048 . A G 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.055;QD=17.98;ReadPosRankSum=1.696;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1741,201,0 chrXIV 749073 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.88;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1638,189,0 chrXIV 749402 . T C 1114 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.41;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1147,129,0 chrXIV 749410 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=17.86;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1033,114,0 chrXIV 749415 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=17.00;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1036,114,0 chrXIV 749467 . G T 1218 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=15.82;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1251,135,0 chrXIV 749472 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=15.01;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1174,138,0 chrXIV 749513 . C G 1408 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.96;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1441,162,0 chrXIV 749541 . T C 1203 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.71;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1236,144,0 chrXIV 749652 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.10;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1974,222,0 chrXIV 749727 . A C 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=83;Dels=0.00;FS=3.536;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.338;QD=18.77;ReadPosRankSum=1.644;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,78:83:99:1591,177,0 chrXIV 749744 . A G 1789 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.45;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1822,204,0 chrXIV 749934 . A G 1881 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.22;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1914,222,0 chrXIV 750028 . C T 1870 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.28;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1903,207,0 chrXIV 750232 . T G 1922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=1.209;QD=18.13;ReadPosRankSum=1.536;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1955,219,0 chrXIV 750252 . G T 2065 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.12;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,105:108:99:2098,231,0 chrXIV 750427 . T C 2237 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=20.91;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2270,261,0 chrXIV 750473 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=16.99;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1613,183,0 chrXIV 750684 . T C 1437 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=17.11;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1470,165,0 chrXIV 750686 . G A 1389 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=17.36;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1422,156,0 chrXIV 750691 . T C 1372 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.82;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1405,156,0 chrXIV 750702 . C T 978 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.87;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1011,117,0 chrXIV 750706 . A T 976 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.472;QD=14.79;ReadPosRankSum=1.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1009,111,0 chrXIV 750714 . C T 791 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.64;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:90:824,90,0 chrXIV 750716 . T C 753 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,58:58:90:786,90,0 chrXIV 750721 . T C 729 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:90:762,90,0 chrXIV 750732 . A G 789 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:93:822,93,0 chrXIV 750743 . C A 699 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:81:732,81,0 chrXIV 750744 . C T 707 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:81:740,81,0 chrXIV 750761 . C T 573 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.46;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:66:606,66,0 chrXIV 750775 . A G 662 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=1;MQRankSum=1.185;QD=11.41;ReadPosRankSum=1.672;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:2,56:58:78:695,78,0 chrXIV 750776 . T C 675 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=1;QD=11.84;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,56:57:78:708,78,0 chrXIV 750779 . T A 738 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=68;Dels=0.00;FS=36.804;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=1;MQRankSum=0.531;QD=10.85;ReadPosRankSum=2.895;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,64:68:84:771,84,0 chrXIV 750800 . T C 577.09 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=64;Dels=0.00;FS=20.472;HaplotypeScore=3.2046;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=1;MQRankSum=1.136;QD=9.02;ReadPosRankSum=2.330;SB=-6.110e+01 GT:AD:DP:GQ:PL 0/1:7,57:64:14:607,0,14 chrXIV 750821 . T C 649.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DP=74;Dels=0.00;FS=64.151;HaplotypeScore=4.7932;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=1;MQRankSum=-0.137;QD=8.77;ReadPosRankSum=1.435;SB=-7.602e+01 GT:AD:DP:GQ:PL 0/1:14,60:74:90:679,0,90 chrXIV 750827 . G A 135.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=77;Dels=0.00;FS=65.979;HaplotypeScore=2.2424;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=1;MQRankSum=-0.097;QD=1.75;ReadPosRankSum=0.331;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:63,14:77:99:165,0,695 chrXIV 750833 . A G 692.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;DP=78;Dels=0.00;FS=60.795;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=28.47;MQ0=1;MQRankSum=-0.409;QD=8.87;ReadPosRankSum=-0.770;SB=-7.202e+01 GT:AD:DP:GQ:PL 0/1:15,62:78:99:722,0,159 chrXIV 750840 . G A 679.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;DP=77;Dels=0.00;FS=65.908;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=1;MQRankSum=1.475;QD=8.82;ReadPosRankSum=-2.323;SB=-6.302e+01 GT:AD:DP:GQ:PL 0/1:16,61:77:99:709,0,180 chrXIV 750848 . G A 721.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;DP=79;Dels=0.00;FS=67.831;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=1;MQRankSum=1.934;QD=9.13;ReadPosRankSum=-3.079;SB=-7.002e+01 GT:AD:DP:GQ:PL 0/1:15,64:79:99:751,0,186 chrXIV 750850 . A G 705.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=79;Dels=0.00;FS=62.412;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=1;MQRankSum=1.623;QD=8.92;ReadPosRankSum=-2.333;SB=-8.502e+01 GT:AD:DP:GQ:PL 0/1:16,63:79:99:735,0,184 chrXIV 750867 . G A 572.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;DP=61;Dels=0.00;FS=55.475;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.72;MQ0=0;MQRankSum=-0.009;QD=9.38;ReadPosRankSum=-0.386;SB=-6.202e+01 GT:AD:DP:GQ:PL 0/1:14,47:61:99:602,0,195 chrXIV 750875 . A C 481.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DP=53;Dels=0.00;FS=41.449;HaplotypeScore=5.2799;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=0;MQRankSum=0.757;QD=9.08;ReadPosRankSum=1.086;SB=-7.302e+01 GT:AD:DP:GQ:PL 0/1:11,42:53:99:511,0,140 chrXIV 750888 . G A 512.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;DP=46;Dels=0.00;FS=55.244;HaplotypeScore=3.9553;MLEAC=1;MLEAF=0.500;MQ=29.02;MQ0=0;MQRankSum=-1.875;QD=11.13;ReadPosRankSum=1.093;SB=-3.302e+01 GT:AD:DP:GQ:PL 0/1:6,40:46:75:542,0,75 chrXIV 750902 . A G 399.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;DP=49;Dels=0.00;FS=41.967;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=29.37;MQ0=0;MQRankSum=-0.442;QD=8.14;ReadPosRankSum=2.669;SB=-3.502e+01 GT:AD:DP:GQ:PL 0/1:6,43:49:59:429,0,59 chrXIV 750905 . A G 580 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=13.49;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:69:613,69,0 chrXIV 750914 . C T 479 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.95;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:57:512,57,0 chrXIV 750915 . C T 477 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:57:510,57,0 chrXIV 750955 . A G 369 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.18;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:45:402,45,0 chrXIV 750961 . C T 324 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.50;SB=-7.065e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:42:357,42,0 chrXIV 751004 . T C 259 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=13.63;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:292,33,0 chrXIV 751013 . A G 286 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=15.05;SB=-8.683e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:36:319,36,0 chrXIV 751019 . A T 259 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=13.63;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:33:292,33,0 chrXIV 751040 . G T 74.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.54;MQ0=5;MQRankSum=0.747;QD=5.73;ReadPosRankSum=0.747;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:5,8:13:12:107,12,0 chrXIV 751052 . G A 76.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=10;MQRankSum=0.736;QD=4.78;ReadPosRankSum=0.736;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:6,10:16:12:109,12,0 chrXIV 751070 . C G 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.81;MQ0=11;MQRankSum=0.731;QD=2.69;ReadPosRankSum=-0.731;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:7,9:16:9:75,9,0 chrXIV 751148 . C T 81.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:114,12,0 chrXIV 751151 . C T 100.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:133,15,0 chrXIV 751159 . A G 131.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.11;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:164,18,0 chrXIV 751172 . G A 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=13;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=30.37;MQ0=0;MQRankSum=0.660;QD=4.46;ReadPosRankSum=-1.369;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:6,7:13:78:88,0,78 chrXIV 751264 . C T 131.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=21;Dels=0.00;FS=18.451;HaplotypeScore=4.8819;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=0;MQRankSum=-0.419;QD=6.24;ReadPosRankSum=1.977;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:2,19:21:18:164,18,0 chrXIV 751286 . G A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=28;Dels=0.00;FS=25.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=2;MQRankSum=-0.529;QD=1.78;ReadPosRankSum=-1.010;SB=-9.807e-01 GT:AD:DP:GQ:PL 1/1:4,24:28:9:82,9,0 chrXIV 751289 . C T 52.97 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=28;Dels=0.00;FS=25.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=2;MQRankSum=-0.722;QD=1.89;ReadPosRankSum=-0.818;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,24:28:9:85,9,0 chrXIV 751291 . T G 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.241;DP=28;Dels=0.00;FS=25.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.69;MQ0=2;MQRankSum=0.337;QD=1.68;ReadPosRankSum=-0.625;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:4,24:28:9:79,9,0 chrXIV 751301 . C A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.574;DP=36;Dels=0.00;FS=27.490;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=23.42;MQ0=2;MQRankSum=0.329;QD=0.58;ReadPosRankSum=0.183;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:4,32:36:6:52,6,0 chrXIV 751306 . T G 20.80 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=38;Dels=0.00;FS=15.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.36;MQ0=2;MQRankSum=0.385;QD=0.55;ReadPosRankSum=-1.733;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:3,35:38:6:52,6,0 chrXIV 751325 . C G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;DP=38;Dels=0.00;FS=15.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.75;MQ0=2;MQRankSum=0.481;QD=0.57;ReadPosRankSum=0.385;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:3,35:38:6:53,6,0 chrXIV 751343 . G A 19.81 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=41;Dels=0.00;FS=15.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=2;MQRankSum=0.489;QD=0.48;ReadPosRankSum=1.111;SB=-1.774e+00 GT:AD:DP:GQ:PL 1/1:3,38:41:6:51,6,0 chrXIV 751364 . A G 41.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.03;MQ0=3;QD=0.89;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,46:47:9:74,9,0 chrXIV 751373 . G A 41.97 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.66;MQ0=3;QD=0.93;SB=-9.818e-01 GT:AD:DP:GQ:PL 1/1:1,43:45:9:74,9,0 chrXIV 751385 . A C 94.26 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=7;QD=2.19;SB=-2.727e-01 GT:AD:DP:GQ:PL 1/1:2,40:43:15:127,15,0 chrXIV 751529 . A G 415 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.89;MQ0=9;QD=11.86;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:54:448,54,0 chrXIV 751540 . C T 327 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=11;QD=10.22;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:42:360,42,0 chrXIV 751721 . G A 1544 filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=7;QD=16.43;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1577,177,0 chrXIV 751807 . G A 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.2977;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=1.046;QD=22.91;ReadPosRankSum=0.850;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2484,246,0 chrXIV 751913 . T G 1402 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=7;MQRankSum=-1.732;QD=17.97;ReadPosRankSum=1.683;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1435,168,0 chrXIV 751925 . C G 1308 filter AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=7;QD=15.57;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1341,159,0 chrXIV 752030 . A G 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;DP=96;Dels=0.00;FS=8.957;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=1;MQRankSum=2.177;QD=18.02;ReadPosRankSum=1.974;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1763,162,0 chrXIV 752069 . A G 1889 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=1;MQRankSum=-1.167;QD=19.08;ReadPosRankSum=1.661;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1922,219,0 chrXIV 752169 . C T 2520 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.72;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2553,279,0 chrXIV 752223 . C T 2145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.5754;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=1.702;QD=18.49;ReadPosRankSum=1.643;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2178,240,0 chrXIV 752316 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.25;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1835,201,0 chrXIV 752591 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.18;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1706,195,0 chrXIV 752783 . G A 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.739;DP=104;Dels=0.00;FS=26.704;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=3.723;QD=19.22;ReadPosRankSum=-0.649;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:7,97:104:99:2032,138,0 chrXIV 752895 . T C 916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;DP=57;Dels=0.00;FS=3.067;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=2.053;QD=16.07;ReadPosRankSum=-0.066;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:2,54:57:99:949,108,0 chrXIV 752936 . A T 923 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.09;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:956,108,0 chrXIV 752968 . C T 878 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.56;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:911,102,0 chrXIV 753197 . C T 766.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.390;DP=124;Dels=0.00;FS=17.568;HaplotypeScore=6.4974;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=0;MQRankSum=-8.450;QD=6.18;ReadPosRankSum=4.436;SB=-1.530e+02 GT:AD:DP:GQ:PL 0/1:70,53:124:99:796,0,1102 chrXIV 753221 . G A 789.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.905;DP=123;Dels=0.00;FS=28.781;HaplotypeScore=3.2847;MLEAC=1;MLEAF=0.500;MQ=46.21;MQ0=0;MQRankSum=-7.018;QD=6.41;ReadPosRankSum=0.452;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:74,49:123:99:819,0,1273 chrXIV 753250 . C T 94.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=91;Dels=0.00;FS=44.531;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=49.35;MQ0=0;MQRankSum=-5.486;QD=1.03;ReadPosRankSum=-4.728;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,16:91:99:124,0,1255 chrXIV 753254 . A G 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;DP=87;Dels=0.00;FS=39.824;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.81;MQ0=0;MQRankSum=-4.919;QD=0.85;ReadPosRankSum=-5.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,13:87:99:104,0,1230 chrXIV 753269 . C T 1177 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.11;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1210,132,0 chrXIV 753290 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=19.35;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1426,156,0 chrXIV 753318 . T G 795 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=14.45;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:96:828,96,0 chrXIV 753325 . C T 698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=52;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;MQRankSum=-1.133;QD=13.42;ReadPosRankSum=1.466;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:81:731,81,0 chrXIV 753336 . G A 794 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=15.27;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:827,90,0 chrXIV 753372 . G C 541 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.88;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:574,66,0 chrXIV 753373 . T A 558 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.29;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:591,66,0 chrXIV 753377 . T G 559 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.31;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:66:592,66,0 chrXIV 753378 . T C 559 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=13.00;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:66:592,66,0 chrXIV 753380 . A G 542 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.04;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:66:575,66,0 chrXIV 753430 . A G 999 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=15.14;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1032,117,0 chrXIV 753431 . G A 983 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=14.89;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1016,111,0 chrXIV 753436 . G C 913 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=14.05;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:946,108,0 chrXIV 753470 . A T 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.657;QD=18.79;ReadPosRankSum=1.613;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1668,183,0 chrXIV 753507 . T A 52.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DP=113;Dels=0.00;FS=74.981;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=47.89;MQ0=0;MQRankSum=-7.437;QD=0.46;ReadPosRankSum=-1.500;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,34:113:82:82,0,1589 chrXIV 753512 . T G 83.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;DP=116;Dels=0.00;FS=79.306;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=0;MQRankSum=-6.901;QD=0.72;ReadPosRankSum=-1.123;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,34:116:99:113,0,1459 chrXIV 753515 . A C 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.216;DP=111;Dels=0.00;FS=74.704;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=47.33;MQ0=0;MQRankSum=-6.843;QD=0.76;ReadPosRankSum=-0.820;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,33:111:99:114,0,1422 chrXIV 753517 . A C 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173;DP=113;Dels=0.00;FS=74.718;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=47.58;MQ0=0;MQRankSum=-6.949;QD=0.72;ReadPosRankSum=-0.092;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,33:113:99:111,0,1382 chrXIV 753522 . C G 94.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DP=112;Dels=0.00;FS=83.535;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.88;MQ0=0;MQRankSum=-6.805;QD=0.84;ReadPosRankSum=-0.898;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,35:112:99:124,0,1318 chrXIV 753524 . A G 82.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.437;DP=116;Dels=0.00;FS=83.360;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=46.38;MQ0=0;MQRankSum=-7.368;QD=0.71;ReadPosRankSum=-0.487;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,35:116:99:112,0,1389 chrXIV 753530 . C A 1864 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.21;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:1897,213,0 chrXIV 753532 . C T 1871 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.27;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1904,213,0 chrXIV 753535 . G A 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.475;DP=116;Dels=0.00;FS=76.578;HaplotypeScore=4.9328;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=0;MQRankSum=-6.618;QD=0.86;ReadPosRankSum=1.671;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,29:116:99:130,0,1338 chrXIV 753538 . C T 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;DP=116;Dels=0.00;FS=75.865;HaplotypeScore=4.9328;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=0;MQRankSum=-6.758;QD=0.72;ReadPosRankSum=1.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,29:116:99:114,0,1327 chrXIV 753541 . A G 92.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=116;Dels=0.00;FS=60.970;HaplotypeScore=4.9763;MLEAC=1;MLEAF=0.500;MQ=48.70;MQ0=0;MQRankSum=-5.658;QD=0.79;ReadPosRankSum=2.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,25:116:99:122,0,1272 chrXIV 753542 . T C 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.876;DP=113;Dels=0.00;FS=66.262;HaplotypeScore=3.3989;MLEAC=1;MLEAF=0.500;MQ=48.98;MQ0=0;MQRankSum=-7.029;QD=0.58;ReadPosRankSum=2.145;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:88,25:113:96:96,0,1387 chrXIV 753552 . A G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;DP=117;Dels=0.00;FS=64.022;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=50.76;MQ0=0;MQRankSum=-6.044;QD=0.86;ReadPosRankSum=1.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,23:117:99:131,0,1389 chrXIV 753557 . A G 118.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;DP=114;Dels=0.00;FS=67.654;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=-6.614;QD=1.04;ReadPosRankSum=0.531;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,23:114:99:148,0,1299 chrXIV 753568 . G A 121.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;DP=96;Dels=0.00;FS=63.373;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=-5.665;QD=1.26;ReadPosRankSum=-2.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,19:96:99:151,0,1114 chrXIV 753569 . G A 105.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=94;Dels=0.00;FS=63.609;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=0;MQRankSum=-5.696;QD=1.12;ReadPosRankSum=-2.702;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,19:94:99:135,0,1111 chrXIV 753727 . A C 1047 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.81;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1080,126,0 chrXIV 753792 . T C 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.680;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.495;QD=20.30;ReadPosRankSum=1.609;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1170,132,0 chrXIV 754288 . A G 2171 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=22.61;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2204,252,0 chrXIV 754294 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=21.47;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2137,246,0 chrXIV 754370 . A G 920 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=16.14;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:953,114,0 chrXIV 754371 . C A 945 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=16.87;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:978,111,0 chrXIV 754380 . C T 822 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=14.42;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:855,96,0 chrXIV 754384 . C T 847 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=14.36;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:880,99,0 chrXIV 754394 . A C 749 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=12.48;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:90:782,90,0 chrXIV 754397 . A C 799 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=13.78;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:96:832,96,0 chrXIV 754399 . G C 766 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.58;MQ0=0;MQRankSum=-1.559;QD=12.56;ReadPosRankSum=1.213;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:96:799,96,0 chrXIV 754526 . A C 759 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=12.44;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:90:792,90,0 chrXIV 754542 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=11.62;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:81:742,81,0 chrXIV 754545 . T C 673 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=10.85;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:78:706,78,0 chrXIV 754557 . T A 619 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=9.24;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:72:652,72,0 chrXIV 754560 . G A 607 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=9.34;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:72:640,72,0 chrXIV 754562 . T C 558 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=8.58;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:66:591,66,0 chrXIV 754568 . T C 448 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=6.14;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:54:481,54,0 chrXIV 754575 . T C 468 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=6.50;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:60:501,60,0 chrXIV 754579 . T A 517 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=7.49;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:60:550,60,0 chrXIV 754581 . T A 514 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=7.45;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:60:547,60,0 chrXIV 754582 . A C 472 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=6.84;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:60:505,60,0 chrXIV 754592 . G T 305 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=5.00;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:39:338,39,0 chrXIV 754593 . T A 349 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=5.72;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:42:382,42,0 chrXIV 754594 . T C 345 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=5.66;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:42:378,42,0 chrXIV 754599 . A G 327 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=5.27;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:42:360,42,0 chrXIV 754600 . A T 329 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=5.22;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:42:362,42,0 chrXIV 754601 . G A 366 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=5.72;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:45:399,45,0 chrXIV 754607 . G A 560 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=5.96;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,90:94:66:593,66,0 chrXIV 754622 . G A 769 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=7.61;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:87:802,87,0 chrXIV 754752 . T A 919 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=17.02;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:952,111,0 chrXIV 754753 . G A 901 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=16.69;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:934,111,0 chrXIV 754756 . T C 874 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=15.89;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:907,108,0 chrXIV 754761 . A G 899 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=15.24;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:932,111,0 chrXIV 754857 . G A 776 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=18.93;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:809,90,0 chrXIV 754862 . T C 654 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=16.77;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:78:687,78,0 chrXIV 754875 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=16.79;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:503,60,0 chrXIV 754876 . G T 509 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=18.18;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:60:542,60,0 chrXIV 754918 . C T 523.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=45;Dels=0.00;FS=24.250;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;MQRankSum=-0.517;QD=11.63;ReadPosRankSum=-2.458;SB=-2.721e+02 GT:AD:DP:GQ:PL 1/1:7,38:45:1:552,1,0 chrXIV 754930 . A G 657.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-3.875;DP=53;Dels=0.00;FS=27.985;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;MQRankSum=0.250;QD=12.40;ReadPosRankSum=-2.772;SB=-3.164e+02 GT:AD:DP:GQ:PL 1/1:7,46:53:13:690,13,0 chrXIV 755218 . T C 1191 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=2;QD=19.85;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1224,141,0 chrXIV 755323 . A C 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=5.359;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-0.022;QD=24.00;ReadPosRankSum=1.688;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1929,216,0 chrXIV 755348 . A G 277.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.279;DP=56;Dels=0.00;FS=11.183;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=0;MQRankSum=-3.760;QD=4.95;ReadPosRankSum=-1.123;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:39,17:56:99:307,0,578 chrXIV 755359 . G A 483.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;DP=54;Dels=0.00;FS=4.835;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=43.03;MQ0=0;MQRankSum=2.003;QD=8.94;ReadPosRankSum=3.986;SB=-3.620e+02 GT:AD:DP:GQ:PL 0/1:13,41:54:99:513,0,159 chrXIV 755402 . T C 379 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=8.06;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:48:412,48,0 chrXIV 755412 . G C 340 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=34.3134;MLEAC=2;MLEAF=1.00;MQ=29.62;MQ0=0;QD=7.91;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:42:373,42,0 chrXIV 755437 . C T 526 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=1;QD=10.73;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:60:559,60,0 chrXIV 755451 . T C 549 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.083;DP=51;Dels=0.00;FS=4.025;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=3;MQRankSum=1.444;QD=10.76;ReadPosRankSum=0.433;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:4,47:51:45:582,45,0 chrXIV 755457 . A T 568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.315;DP=54;Dels=0.00;FS=8.268;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=3;MQRankSum=2.208;QD=10.52;ReadPosRankSum=1.043;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:5,49:54:44:601,44,0 chrXIV 755545 . T C 550.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;DP=54;Dels=0.00;FS=31.391;HaplotypeScore=16.7770;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=0;MQRankSum=1.550;QD=10.20;ReadPosRankSum=1.862;SB=-3.958e+02 GT:AD:DP:GQ:PL 0/1:12,42:54:0:579,0,0 chrXIV 755548 . T C 505.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;DP=53;Dels=0.00;FS=28.592;HaplotypeScore=14.1984;MLEAC=1;MLEAF=0.500;MQ=39.41;MQ0=0;MQRankSum=2.094;QD=9.54;ReadPosRankSum=1.590;SB=-3.798e+02 GT:AD:DP:GQ:PL 0/1:11,42:53:0:534,0,0 chrXIV 755549 . A G 534.13 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.487;DP=52;Dels=0.00;FS=18.085;HaplotypeScore=11.3249;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;MQRankSum=0.647;QD=10.27;ReadPosRankSum=0.418;SB=-4.021e+02 GT:AD:DP:GQ:PL 1/1:8,44:52:1:563,1,0 chrXIV 755567 . C A 731 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=13.05;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:84:764,84,0 chrXIV 755572 . T G 545.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;DP=56;Dels=0.00;FS=28.062;HaplotypeScore=1.9367;MLEAC=1;MLEAF=0.500;MQ=38.72;MQ0=0;MQRankSum=-0.124;QD=9.73;ReadPosRankSum=1.505;SB=-4.240e+02 GT:AD:DP:GQ:PL 0/1:11,45:56:22:575,0,22 chrXIV 755706 . G A 1623.27 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=1;MLEAF=0.500;MQ=54.19;MQ0=0;MQRankSum=3.727;QD=19.32;ReadPosRankSum=-2.116;SB=-3.401e+02 GT:AD:DP:GQ:PL 0/1:9,75:84:9:1653,0,9 chrXIV 755761 . G T 2350 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7709;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=25.00;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2383,261,0 chrXIV 755812 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.68;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1489,165,0 chrXIV 755923 . T C 735 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=15.31;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:87:768,87,0 chrXIV 756613 . C G 1996 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.66;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2029,231,0 chrXIV 756837 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=79;Dels=0.00;FS=7.030;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.059;QD=20.25;ReadPosRankSum=2.387;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1633,186,0 chrXIV 756903 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1898,210,0 chrXIV 756952 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.84;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1759,195,0 chrXIV 756985 . G A 1601 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.79;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1634,180,0 chrXIV 757123 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.23;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1540,168,0 chrXIV 757207 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.16;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1451,168,0 chrXIV 757236 . T C 1646 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=5.519;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.329;QD=19.83;ReadPosRankSum=2.916;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1679,192,0 chrXIV 757420 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.11;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2024,231,0 chrXIV 757477 . T A 2138 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.04;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2171,234,0 chrXIV 757822 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.78;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2136,252,0 chrXIV 757885 . A T 1592 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.89;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1625,177,0 chrXIV 757924 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.32;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1830,204,0 chrXIV 757948 . G A 2103 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.45;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2136,243,0 chrXIV 758102 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.36;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2476,282,0 chrXIV 758123 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.3762;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.80;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2449,273,0 chrXIV 758159 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=14.20;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:1723,198,0 chrXIV 758169 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=15.92;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1816,201,0 chrXIV 758257 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=16.81;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1546,171,0 chrXIV 758263 . A C 1463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=9.142;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.203;QD=17.21;ReadPosRankSum=2.363;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1496,174,0 chrXIV 758397 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.32;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1773,201,0 chrXIV 758547 . A G 2259 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2402;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.72;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2292,258,0 chrXIV 758691 . G C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=92;Dels=0.00;FS=3.860;HaplotypeScore=6.0332;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=1.578;QD=19.03;ReadPosRankSum=0.154;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1784,204,0 chrXIV 758804 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.130;QD=19.15;ReadPosRankSum=1.658;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1833,210,0 chrXIV 758819 . T G 1693 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.01;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1726,198,0 chrXIV 758938 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.59;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1317,153,0 chrXIV 759083 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=16.51;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1667,189,0 chrXIV 759120 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.46;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1956,225,0 chrXIV 759134 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.06;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1653,183,0 chrXIV 759584 . A T 1705 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1738,195,0 chrXIV 759935 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.63;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1549,171,0 chrXIV 760389 . C T 824 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.13;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:857,93,0 chrXIV 760406 . C T 801 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.07;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:834,90,0 chrXIV 760445 . T C 842 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.54;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:875,99,0 chrXIV 761002 . G T 1456 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.95;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1489,171,0 chrXIV 761005 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.39;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1468,165,0 chrXIV 761123 . C G 980 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.49;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1013,114,0 chrXIV 761147 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.35;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:935,105,0 chrXIV 761171 . G A 872 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.30;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:905,102,0 chrXIV 761193 . A G 861 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=14.35;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:894,102,0 chrXIV 761301 . G A 1100 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.74;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1133,129,0 chrXIV 761636 . A G 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.990;QD=22.26;ReadPosRankSum=1.650;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:99:990,111,0 chrXIV 761851 . C T 1183 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=10.5483;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.66;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1216,135,0 chrXIV 762433 . A C 1214 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.86;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1247,144,0 chrXIV 762511 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.70;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2165,243,0 chrXIV 762827 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.26;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1766,204,0 chrXIV 763059 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.73;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2168,249,0 chrXIV 763381 . A C 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.110;QD=17.03;ReadPosRankSum=1.688;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1378,159,0 chrXIV 763389 . G T 1272 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=16.74;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1305,144,0 chrXIV 763497 . T A 1972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.43;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2005,216,0 chrXIV 763540 . C G 1417 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2185;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.24;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:70:99:1450,165,0 chrXIV 763742 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.84;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1596,177,0 chrXIV 763816 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.70;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1530,174,0 chrXIV 763884 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.46;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1179,135,0 chrXIV 763922 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.07;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1081,120,0 chrXIV 763930 . G A 875 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=13.67;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:908,105,0 chrXIV 763942 . A C 1005 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=16.75;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1038,117,0 chrXIV 764011 . C T 1291 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.18;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1324,147,0 chrXIV 764266 . A T 1434 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.78;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1467,162,0 chrXIV 764311 . T A 1441 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.57;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1474,165,0 chrXIV 764330 . T A 1482 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.76;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1515,168,0 chrXIV 764357 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.32;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1094,123,0 chrXIV 764413 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.61;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:778,87,0 chrXIV 764538 . T G 860 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:893,102,0 chrXIV 764688 . A G 840 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.26;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:873,99,0 chrXIV 765293 . T G 2594 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2419;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.09;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2627,306,0 chrXIV 765330 . T G 2045 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.11;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2078,237,0 chrXIV 765537 . T C 1777 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.368;QD=23.08;ReadPosRankSum=1.687;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1810,207,0 chrXIV 765758 . T A 2923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=142;Dels=0.00;FS=9.997;HaplotypeScore=17.3510;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=0.936;QD=20.58;ReadPosRankSum=2.907;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:3,139:142:99:2956,330,0 chrXIV 766008 . T G 1405 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.62;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1438,168,0 chrXIV 766253 . T C 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.240;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.696;QD=20.16;ReadPosRankSum=1.696;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2009,234,0 chrXIV 766454 . T C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.247;QD=20.38;ReadPosRankSum=1.677;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1317,150,0 chrXIV 766814 . T G 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.590;DP=89;Dels=0.00;FS=5.001;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.009;QD=19.62;ReadPosRankSum=3.465;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:5,84:89:99:1779,198,0 chrXIV 766895 . A T 2536 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.05;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2569,282,0 chrXIV 767726 . A C 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.787;QD=21.19;ReadPosRankSum=1.680;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1453,165,0 chrXIV 768008 . A C 620 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.40;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:75:653,75,0 chrXIV 768365 . A T 1507 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.93;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1540,168,0 chrXIV 768575 . C T 1665 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.06;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1698,195,0 chrXIV 768845 . A C 1606 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8921;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=0.450;QD=15.90;ReadPosRankSum=2.591;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:3,98:101:99:1639,189,0 chrXIV 768862 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=13.53;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1440,165,0 chrXIV 768903 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.88;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1506,171,0 chrXIV 769242 . T A 1445 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.07;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1478,162,0 chrXIV 769375 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.82;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1574,180,0 chrXIV 769532 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.42;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1647,180,0 chrXIV 769652 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.63;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1682,198,0 chrXIV 769803 . T C 530 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.72;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:563,66,0 chrXIV 770068 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.89;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:917,102,0 chrXIV 770112 . T A 488 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.27;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:521,60,0 chrXIV 770149 . A G 291 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.32;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:36:324,36,0 chrXIV 770174 . A G 359 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=15.61;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:392,45,0 chrXIV 770313 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.86;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1352,150,0 chrXIV 770350 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.54;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1309,147,0 chrXIV 770491 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7396;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.38;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1667,186,0 chrXIV 770599 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.16;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2022,225,0 chrXIV 770920 . T C 1990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=3.979;HaplotypeScore=8.1508;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.157;QD=18.09;ReadPosRankSum=1.638;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2023,228,0 chrXIV 771453 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=16.81;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1714,189,0 chrXIV 771471 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.20;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1685,189,0 chrXIV 771589 . A T 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=125;Dels=0.00;FS=2.545;HaplotypeScore=9.5532;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.934;QD=19.98;ReadPosRankSum=2.943;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2530,294,0 chrXIV 771732 . C G 1512 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.79;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1545,174,0 chrXIV 772118 . T G 611 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.97;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:75:644,75,0 chrXIV 772160 . A G 728 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.18;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:761,84,0 chrXIV 772254 . G C 963 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=16.89;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:996,111,0 chrXIV 772272 . A G 1139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.268;QD=16.51;ReadPosRankSum=2.379;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1172,132,0 chrXIV 772448 . G C 579 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.09;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:69:612,69,0 chrXIV 772480 . G A 339 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=10.27;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:42:372,42,0 chrXIV 772541 . C A 473 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;QD=13.14;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:506,57,0 chrXIV 772570 . C G 249 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=13.3442;MLEAC=2;MLEAF=1.00;MQ=31.88;MQ0=0;QD=9.58;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:282,33,0 chrXIV 772594 . C A 199.01 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=11.71;SB=-1.279e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:27:232,27,0 chrXIV 772697 . G C 1901 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=21.12;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1934,219,0 chrXIV 772716 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=19.43;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1840,204,0 chrXIV 772728 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=1;QD=18.21;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1745,195,0 chrXIV 772737 . A G 1453 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=4;QD=16.70;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1486,168,0 chrXIV 772770 . C T 764 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.073;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=6;MQRankSum=0.898;QD=13.40;ReadPosRankSum=0.121;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:3,54:57:90:797,90,0 chrXIV 772834 . T C 257 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=8;QD=7.14;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:290,33,0 chrXIV 772854 . C T 129.13 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=7;QD=4.30;SB=-5.588e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:162,18,0 chrXIV 773034 . T C 1057 filter AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=15;QD=11.62;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1090,126,0 chrXIV 773076 . A G 1019 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=21;MQRankSum=-0.157;QD=11.71;ReadPosRankSum=1.680;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1052,120,0 chrXIV 773217 . A G 1133 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.709;DP=87;Dels=0.00;FS=5.328;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=18;MQRankSum=3.017;QD=13.02;ReadPosRankSum=-0.475;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:12,75:87:99:1166,101,0 chrXIV 773226 . T C 1133 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=16;QD=14.53;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1166,132,0 chrXIV 773244 . A T 1065 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.437;DP=82;Dels=0.00;FS=2.994;HaplotypeScore=3.7368;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=17;MQRankSum=2.070;QD=12.99;ReadPosRankSum=2.374;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:11,71:82:99:1098,104,0 chrXIV 773265 . T G 808 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=18;QD=11.38;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:96:841,96,0 chrXIV 773424 . T G 252 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;DP=26;Dels=0.00;FS=16.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=10;MQRankSum=1.826;QD=9.69;ReadPosRankSum=1.985;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,24:26:33:285,33,0 chrXIV 773664 . T C 100.26 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.02;MQ0=3;QD=8.36;SB=-4.776e+01 GT:AD:DP:GQ:PL 1/1:0,11:12:15:133,15,0 chrXIV 773667 . C T 103.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=12;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.99;MQ0=3;MQRankSum=0.751;QD=8.61;ReadPosRankSum=0.751;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:15:136,15,0 chrXIV 773745 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=1;QD=9.19;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:9:78,9,0 chrXIV 773751 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.57;MQ0=1;QD=9.39;SB=-5.021e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:79,9,0 chrXIV 773805 . T G 124.13 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=13;QD=5.40;SB=-1.247e-01 GT:AD:DP:GQ:PL 1/1:0,23:23:18:157,18,0 chrXIV 773868 . T C 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=1;MLEAF=0.500;MQ=23.28;MQ0=23;MQRankSum=2.170;QD=4.96;ReadPosRankSum=1.503;SB=-4.800e+01 GT:AD:DP:GQ:PL 0/1:20,33:53:42:293,0,42 chrXIV 773895 . A C 15.14 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=44;Dels=0.00;FS=2.548;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=14;MQRankSum=-2.170;QD=0.34;ReadPosRankSum=2.449;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,5:44:45:45,0,266 chrXIV 773898 . C T 12.27 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DP=45;Dels=0.00;FS=2.518;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=22.86;MQ0=14;MQRankSum=-2.283;QD=0.27;ReadPosRankSum=2.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,13:45:42:42,0,297 chrXIV 773901 . A G 399 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=15;QD=8.87;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:51:432,51,0 chrXIV 773934 . T A 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;DP=47;Dels=0.00;FS=5.364;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.80;MQ0=13;MQRankSum=1.848;QD=4.00;ReadPosRankSum=0.681;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:13,34:47:51:218,0,51 chrXIV 773940 . C T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;DP=49;Dels=0.00;FS=5.359;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=15;MQRankSum=-2.033;QD=0.65;ReadPosRankSum=-2.084;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,5:49:62:62,0,129 chrXIV 773949 . T C 128.13 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=19.80;MQ0=16;QD=3.05;SB=-2.141e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:18:161,18,0 chrXIV 774129 . C T 13.94 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.69;MQ0=12;MQRankSum=0.731;QD=0.82;ReadPosRankSum=0.731;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:8,9:17:6:45,6,0 chrXIV 774154 . C T 123.13 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=9;QD=4.93;SB=-5.088e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:18:156,18,0 chrXIV 774219 . T C 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;DP=39;Dels=0.00;FS=5.146;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=9;MQRankSum=-0.245;QD=0.80;ReadPosRankSum=1.618;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:29,10:39:61:61,0,229 chrXIV 774280 . C T 267 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.86;MQ0=14;QD=8.61;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:300,33,0 chrXIV 774285 . C G 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=33;Dels=0.00;FS=24.736;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=14;MQRankSum=-0.784;QD=1.79;ReadPosRankSum=-0.702;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:20,13:33:89:89,0,168 chrXIV 774450 . T C 254 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=6;QD=5.40;SB=-2.500e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:33:287,33,0 chrXIV 774476 . G C 182.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.11;MQ0=2;QD=5.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:24:215,24,0 chrXIV 774482 . G A 71.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.070;DP=32;Dels=0.00;FS=5.425;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.53;MQ0=2;MQRankSum=1.759;QD=2.23;ReadPosRankSum=-0.586;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:22,10:32:12:104,12,0 chrXIV 774484 . T C 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=2;QD=1.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:9:81,9,0 chrXIV 774507 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.651;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=2.9263;MLEAC=2;MLEAF=1.00;MQ=19.25;MQ0=4;MQRankSum=-1.519;QD=1.09;ReadPosRankSum=0.217;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:5,15:20:6:54,6,0 chrXIV 774545 . T G 126.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=20.9401;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=7;MQRankSum=2.872;QD=3.71;ReadPosRankSum=-0.184;SB=-6.013e+01 GT:AD:DP:GQ:PL 1/1:22,11:33:18:159,18,0 chrXIV 774589 . C A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;DP=47;Dels=0.00;FS=1.421;HaplotypeScore=4.9012;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=9;MQRankSum=2.092;QD=2.17;ReadPosRankSum=0.129;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:27,20:47:99:132,0,284 chrXIV 774599 . T C 307.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;DP=45;Dels=0.00;FS=1.608;HaplotypeScore=2.9444;MLEAC=1;MLEAF=0.500;MQ=34.23;MQ0=9;MQRankSum=-2.220;QD=6.82;ReadPosRankSum=1.552;SB=-2.170e+02 GT:AD:DP:GQ:PL 0/1:14,29:45:73:337,0,73 chrXIV 774636 . T G 544 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=17;QD=11.57;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:66:577,66,0 chrXIV 774659 . T G 297.34 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;DP=60;Dels=0.00;FS=12.080;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=21.02;MQ0=24;MQRankSum=1.235;QD=4.96;ReadPosRankSum=1.327;SB=-4.235e+01 GT:AD:DP:GQ:PL 0/1:25,35:60:8:327,0,8 chrXIV 774663 . C A 417 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=24;QD=7.07;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:48:450,48,0 chrXIV 774736 . A G 995.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DP=181;Dels=0.00;FS=0.674;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=27.93;MQ0=20;MQRankSum=-1.196;QD=5.50;ReadPosRankSum=-2.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,92:181:99:1025,0,1217 chrXIV 774840 . A G 611 filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.98;MQ0=30;QD=8.26;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,74:74:75:644,75,0 chrXIV 774888 . G A 407 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.990;DP=64;Dels=0.00;FS=11.614;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=35;MQRankSum=-1.936;QD=6.36;ReadPosRankSum=0.215;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:11,53:64:51:440,51,0 chrXIV 774924 . G A 309 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=59;QD=3.77;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:39:342,39,0 chrXIV 774934 . T C 320.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.1722;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=58;MQRankSum=-1.243;QD=3.23;ReadPosRankSum=2.820;SB=-1.320e+02 GT:AD:DP:GQ:PL 0/1:51,48:99:73:350,0,73 chrXIV 774960 . G A 386.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.911;DP=129;Dels=0.00;FS=2.161;HaplotypeScore=3.3427;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=65;MQRankSum=2.036;QD=2.99;ReadPosRankSum=0.432;SB=-1.680e+02 GT:AD:DP:GQ:PL 0/1:61,68:129:99:416,0,559 chrXIV 774977 . G C 479.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.0348;MLEAC=1;MLEAF=0.500;MQ=22.35;MQ0=60;MQRankSum=-0.779;QD=3.83;ReadPosRankSum=-0.148;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:74,50:125:99:509,0,511 chrXIV 775031 . G A 1795 filter AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.07;MQ0=64;QD=10.20;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:6,170:176:99:1828,207,0 chrXIV 775082 . C T 844.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DP=188;Dels=0.00;FS=53.941;HaplotypeScore=17.3241;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=74;MQRankSum=2.886;QD=4.49;ReadPosRankSum=-1.324;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:77,107:188:99:874,0,212 chrXIV 775095 . T C 902 filter AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=6.0282;MLEAC=2;MLEAF=1.00;MQ=19.39;MQ0=77;QD=5.21;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,172:173:99:935,108,0 chrXIV 775104 . A G 592.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.634;DP=166;Dels=0.00;FS=56.571;HaplotypeScore=6.4786;MLEAC=1;MLEAF=0.500;MQ=21.31;MQ0=64;MQRankSum=2.345;QD=3.57;ReadPosRankSum=-1.204;SB=-4.200e+02 GT:AD:DP:GQ:PL 0/1:64,101:166:99:622,0,153 chrXIV 775119 . A G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.014;DP=165;Dels=0.00;FS=48.344;HaplotypeScore=10.5799;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=49;MQRankSum=-4.436;QD=0.12;ReadPosRankSum=2.660;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,52:165:49:49,0,1202 chrXIV 775344 . T C 37.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=211;Dels=0.00;FS=51.073;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=15.54;MQ0=137;MQRankSum=1.002;QD=0.18;ReadPosRankSum=0.411;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:132,79:211:67:67,0,796 chrXIV 775974 . A G 683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=34;Dels=0.00;FS=7.132;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=3;MQRankSum=1.509;QD=20.09;ReadPosRankSum=1.621;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:81:716,81,0 chrXIV 776073 . T C 311 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.349;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=20;MQRankSum=0.771;QD=8.18;ReadPosRankSum=1.542;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:39:344,39,0 chrXIV 776172 . G A 273.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;DP=96;Dels=0.00;FS=83.184;HaplotypeScore=6.4539;MLEAC=1;MLEAF=0.500;MQ=30.56;MQ0=34;MQRankSum=-0.724;QD=2.84;ReadPosRankSum=2.059;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,41:96:99:303,0,535 chrXIV 776214 . A G 500 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.945;DP=49;Dels=0.00;FS=21.676;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=18;MQRankSum=1.205;QD=10.20;ReadPosRankSum=3.945;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:7,42:49:60:533,60,0 chrXIV 776259 . G A 547 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=2;QD=12.16;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:66:580,66,0 chrXIV 776301 . A T 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;DP=63;Dels=0.00;FS=33.474;HaplotypeScore=45.7715;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=2;MQRankSum=-1.257;QD=0.29;ReadPosRankSum=-1.257;SB=-2.709e+02 GT:AD:DP:GQ:PL 0/1:25,38:63:48:48,0,187 chrXIV 776401 . G A 1194 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=18.66;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1227,135,0 chrXIV 776430 . C G 1282 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.35;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1315,150,0 chrXIV 776452 . A G 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.391;QD=20.29;ReadPosRankSum=1.621;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1291,144,0 chrXIV 776737 . G A 830 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=15.96;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:863,99,0 chrXIV 776784 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.20;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1010,108,0 chrXIV 776872 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.77;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1591,174,0 chrXIV 776904 . T G 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.698;QD=17.03;ReadPosRankSum=1.060;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,66:69:99:1208,138,0 chrXIV 777079 . T C 703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=42;Dels=0.00;FS=3.222;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=61.28;MQ0=0;MQRankSum=-1.238;QD=16.74;ReadPosRankSum=1.650;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:84:736,84,0 chrXIV 777128 . C T 1182 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.73;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1215,135,0 chrXIV 777188 . A G 1203 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.10;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1236,144,0 chrXIV 777259 . T C 393 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=12.68;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:51:426,51,0 chrXIV 777337 . A G 306 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.57;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:39:339,39,0 chrXIV 777389 . A G 367 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.35;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:400,45,0 chrXIV 777435 . G A 463 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.321;QD=17.15;ReadPosRankSum=-0.064;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:1,26:27:54:496,54,0 chrXIV 777773 . A G 559 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:66:592,66,0 chrXIV 777816 . C G 587 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,23:25:69:620,69,0 chrXIV 777944 . T C 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.54;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1245,141,0 chrXIV 777993 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.21;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1301,144,0 chrXIV 778223 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.41;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1564,177,0 chrXIV 778256 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.02;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1189,132,0 chrXIV 778411 . C A 2217 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.09;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2250,243,0 chrXIV 778589 . G C 1452 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.36;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1485,174,0 chrXIV 778731 . A G 1249 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=14.52;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1282,144,0 chrXIV 778746 . G C 1413 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.70;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1446,159,0 chrXIV 778777 . C T 1941 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=18.84;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1974,219,0 chrXIV 778804 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=16.75;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1809,201,0 chrXIV 778831 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=16.95;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1457,168,0 chrXIV 778833 . T C 1359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.981;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;MQRankSum=-0.958;QD=15.99;ReadPosRankSum=1.691;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1392,165,0 chrXIV 778885 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=7.452;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;MQRankSum=-0.115;QD=16.26;ReadPosRankSum=2.322;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:2,94:96:99:1594,177,0 chrXIV 778893 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=17.11;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1676,183,0 chrXIV 779009 . T A 1231 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=19.85;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1264,138,0 chrXIV 779010 . A C 1145 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=18.17;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1178,138,0 chrXIV 779046 . C T 965 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=15.32;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:998,114,0 chrXIV 779067 . G A 872 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=14.06;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:905,102,0 chrXIV 779096 . C A 983 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=17.87;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1016,117,0 chrXIV 779134 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.18;MQ0=0;QD=18.12;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1066,120,0 chrXIV 779143 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=17.11;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:991,114,0 chrXIV 779157 . A C 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=2.759;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;MQRankSum=-0.866;QD=16.18;ReadPosRankSum=2.352;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:842,99,0 chrXIV 779192 . T G 720 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=15.00;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:90:753,90,0 chrXIV 779202 . T A 651 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=15.88;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:684,81,0 chrXIV 779203 . G A 680 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=16.59;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:713,81,0 chrXIV 779204 . T C 642 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=15.66;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:675,81,0 chrXIV 779247 . A G 960 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=16.84;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:993,114,0 chrXIV 779265 . T C 862 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=15.12;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:895,102,0 chrXIV 779288 . T A 773 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=13.56;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:806,90,0 chrXIV 779363 . T C 717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=9.912;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-1.996;QD=14.63;ReadPosRankSum=2.350;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:87:750,87,0 chrXIV 779454 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.98;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1397,156,0 chrXIV 779605 . A G 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=7.559;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.395;QD=15.18;ReadPosRankSum=1.550;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:898,102,0 chrXIV 779825 . G T 1329 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.10;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1362,147,0 chrXIV 779864 . G C 1761 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.74;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1794,207,0 chrXIV 780402 . G C 1564 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.31;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1597,183,0 chrXIV 780598 . G T 1750 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.87;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1783,195,0 chrXIV 780633 . A C 1999 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.73;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2032,228,0 chrXIV 780696 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.42;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2014,228,0 chrXIV 781018 . G C 871 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.36;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:904,102,0 chrXIV 781113 . T C 557 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.9094;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=14.28;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:590,66,0 chrXIV 781271 . G A 1067.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.794;DP=79;Dels=0.00;FS=15.112;HaplotypeScore=13.3149;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=4;MQRankSum=4.074;QD=13.51;ReadPosRankSum=3.700;SB=-3.988e+02 GT:AD:DP:GQ:PL 1/1:19,58:79:29:1100,29,0 chrXIV 781298 . A T 650.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;DP=75;Dels=0.00;FS=15.567;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=4;MQRankSum=2.400;QD=8.67;ReadPosRankSum=1.279;SB=-1.730e+02 GT:AD:DP:GQ:PL 0/1:24,51:75:92:680,0,92 chrXIV 781394 . C A 394.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.322;DP=36;Dels=0.00;FS=28.467;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=1.723;QD=10.94;ReadPosRankSum=0.409;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:11,24:36:33:424,0,33 chrXIV 781404 . A C,G 584.14 PASS AC=1,1;AF=0.500,0.500;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=1,1;MLEAF=0.500,0.500;MQ=27.08;MQ0=0;QD=12.17;SB=-1.542e+02 GT:AD:DP:GQ:PL 1/2:0,18,29:48:42:644,533,518,111,0,42 chrXIV 781495 . A T 382.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.146;DP=44;Dels=0.00;FS=18.995;HaplotypeScore=4.1915;MLEAC=1;MLEAF=0.500;MQ=30.68;MQ0=0;MQRankSum=-1.279;QD=8.68;ReadPosRankSum=-1.801;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:19,25:44:99:412,0,424 chrXIV 781511 . C G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;DP=35;Dels=0.00;FS=61.085;HaplotypeScore=20.0190;MLEAC=1;MLEAF=0.500;MQ=30.62;MQ0=0;MQRankSum=-2.246;QD=1.66;ReadPosRankSum=1.491;SB=7.160e-03 GT:AD:DP:GQ:PL 0/1:26,9:35:88:88,0,536 chrXIV 781523 . T A 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DP=50;Dels=0.00;FS=18.336;HaplotypeScore=10.3308;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=1;MQRankSum=-1.502;QD=4.58;ReadPosRankSum=-2.090;SB=-7.000e+01 GT:AD:DP:GQ:PL 0/1:17,33:50:99:259,0,313 chrXIV 781540 . G A 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;DP=62;Dels=0.00;FS=87.647;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=1;MQRankSum=-0.091;QD=3.19;ReadPosRankSum=1.627;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:38,23:62:99:228,0,603 chrXIV 781550 . C A 201.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=64;Dels=0.00;FS=89.716;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=1;MQRankSum=1.576;QD=3.14;ReadPosRankSum=0.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,27:64:99:231,0,647 chrXIV 781551 . G A 195.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.576;DP=64;Dels=0.00;FS=89.716;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=27.73;MQ0=1;MQRankSum=1.465;QD=3.05;ReadPosRankSum=0.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,27:64:99:225,0,625 chrXIV 781557 . G A 197.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;DP=62;Dels=0.00;FS=85.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=1;MQRankSum=1.256;QD=3.18;ReadPosRankSum=-0.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,27:62:99:227,0,592 chrXIV 781560 . C G 184.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DP=62;Dels=0.00;FS=85.260;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=1;MQRankSum=0.922;QD=2.97;ReadPosRankSum=-1.445;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,27:62:99:214,0,640 chrXIV 781564 . A C 129.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.403;DP=66;Dels=0.00;FS=69.490;HaplotypeScore=43.4538;MLEAC=1;MLEAF=0.500;MQ=27.77;MQ0=1;MQRankSum=1.533;QD=1.95;ReadPosRankSum=-1.038;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,26:66:99:159,0,638 chrXIV 781582 . T C 598.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DP=77;Dels=0.00;FS=11.044;HaplotypeScore=30.1062;MLEAC=1;MLEAF=0.500;MQ=26.74;MQ0=1;MQRankSum=-0.428;QD=7.77;ReadPosRankSum=0.089;SB=-3.592e+02 GT:AD:DP:GQ:PL 0/1:11,66:77:99:628,0,120 chrXIV 781598 . T A 168.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DP=95;Dels=0.00;FS=128.883;HaplotypeScore=14.3994;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=6;MQRankSum=-1.558;QD=1.77;ReadPosRankSum=0.928;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:39,56:95:99:198,0,646 chrXIV 781606 . T C 408.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=91;Dels=0.00;FS=112.376;HaplotypeScore=14.3994;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=7;MQRankSum=-0.646;QD=4.48;ReadPosRankSum=3.303;SB=-6.302e+01 GT:AD:DP:GQ:PL 0/1:21,70:91:99:438,0,328 chrXIV 781648 . G A 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DP=79;Dels=0.00;FS=12.705;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=10;MQRankSum=4.279;QD=1.18;ReadPosRankSum=-1.662;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,38:79:99:123,0,179 chrXIV 781670 . C G 421 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.028;DP=76;Dels=0.00;FS=11.186;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=18.71;MQ0=10;MQRankSum=3.215;QD=5.54;ReadPosRankSum=1.565;SB=-4.574e+01 GT:AD:DP:GQ:PL 1/1:16,59:76:38:454,38,0 chrXIV 781691 . A G 334 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=6;MQRankSum=-0.332;QD=6.30;ReadPosRankSum=1.659;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:1,52:53:42:367,42,0 chrXIV 781699 . A G 369 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.53;MQ0=4;QD=7.53;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:45:402,45,0 chrXIV 781706 . T C 385 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=46;Dels=0.00;FS=16.335;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=3;MQRankSum=1.652;QD=8.37;ReadPosRankSum=1.652;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:2,44:46:48:418,48,0 chrXIV 781725 . G C 282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;DP=44;Dels=0.00;FS=6.128;HaplotypeScore=4.4725;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=3;MQRankSum=2.171;QD=6.41;ReadPosRankSum=-0.046;SB=-6.574e-03 GT:AD:DP:GQ:PL 0/1:13,31:44:45:312,0,45 chrXIV 781727 . G A 248.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.852;DP=44;Dels=0.00;FS=4.988;HaplotypeScore=4.4725;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=3;MQRankSum=1.359;QD=5.64;ReadPosRankSum=-0.042;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,28:44:96:278,0,96 chrXIV 781729 . G A 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.4725;MLEAC=1;MLEAF=0.500;MQ=21.95;MQ0=3;MQRankSum=-1.181;QD=0.37;ReadPosRankSum=0.835;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,10:44:46:46,0,312 chrXIV 781747 . A G 251.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;DP=42;Dels=0.00;FS=2.707;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=6;MQRankSum=1.303;QD=5.98;ReadPosRankSum=-0.365;SB=-6.521e-03 GT:AD:DP:GQ:PL 0/1:16,25:42:61:281,0,61 chrXIV 781758 . T A 403.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=24.58;MQ0=6;MQRankSum=1.292;QD=9.37;ReadPosRankSum=-1.158;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,25:43:99:433,0,99 chrXIV 781759 . G A 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;DP=46;Dels=0.00;FS=2.636;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=7;MQRankSum=-0.328;QD=1.89;ReadPosRankSum=1.170;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,15:46:99:117,0,433 chrXIV 781799 . A G 895 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=6;MQRankSum=1.983;QD=14.67;ReadPosRankSum=2.872;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:3,58:61:99:928,105,0 chrXIV 781830 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=3;MQRankSum=-0.018;QD=0.77;ReadPosRankSum=-1.738;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,7:43:63:63,0,465 chrXIV 781833 . T C 582 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=3;QD=13.86;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,39:42:69:615,69,0 chrXIV 781844 . C A 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DP=38;Dels=0.00;FS=3.424;HaplotypeScore=11.5524;MLEAC=1;MLEAF=0.500;MQ=24.30;MQ0=5;MQRankSum=0.271;QD=1.97;ReadPosRankSum=0.054;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:23,15:38:99:105,0,293 chrXIV 781864 . A C 78.51 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=8.72;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:4,5:9:12:111,12,0 chrXIV 781877 . T C 78.51 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=4;QD=7.85;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:4,6:10:12:111,12,0 chrXIV 781885 . A C 78.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=4;QD=7.14;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:111,12,0 chrXIV 781889 . C T 73.51 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=4;QD=6.68;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:12:106,12,0 chrXIV 781902 . A G 124.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=14;Dels=0.00;FS=6.990;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=4;MQRankSum=1.733;QD=8.87;ReadPosRankSum=-0.480;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:6,8:14:18:157,18,0 chrXIV 781916 . C A 110.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DP=15;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=3;MQRankSum=2.034;QD=7.38;ReadPosRankSum=-1.664;SB=0.476 GT:AD:DP:GQ:PL 0/1:6,9:15:5:140,0,5 chrXIV 781950 . T C 140.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=4;QD=8.75;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:4,12:16:21:173,21,0 chrXIV 781953 . C T 149.06 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=5;QD=8.77;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:5,12:17:21:182,21,0 chrXIV 781971 . T C 103.64 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DP=27;Dels=0.00;FS=2.808;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=17.67;MQ0=12;MQRankSum=1.653;QD=3.84;ReadPosRankSum=0.429;SB=-6.439e-01 GT:AD:DP:GQ:PL 0/1:15,12:27:5:133,0,5 chrXIV 782335 . T A 35.97 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=3;QD=1.06;SB=-7.498e+01 GT:AD:DP:GQ:PL 1/1:2,32:34:9:68,9,0 chrXIV 782404 . G A 40.97 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.23;MQ0=1;QD=10.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:9:73,9,0 chrXIV 783352 . G T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.718;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=18.2291;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=1;MQRankSum=0.259;QD=1.56;ReadPosRankSum=2.047;SB=1.24 GT:AD:DP:GQ:PL 1/1:6,7:14:6:53,6,0 chrXIV 783361 . A C 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=38.1790;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=3;MQRankSum=-1.292;QD=1.14;ReadPosRankSum=1.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,38:57:95:95,0,157 chrXIV 783370 . G A 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=59.0081;MLEAC=1;MLEAF=0.500;MQ=19.91;MQ0=7;MQRankSum=2.433;QD=1.39;ReadPosRankSum=0.306;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,60:95:99:162,0,168 chrXIV 783379 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=43.7651;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=7;MQRankSum=0.706;QD=0.38;ReadPosRankSum=-3.074;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:86,37:126:78:78,0,597 chrXIV 783398 . C T 373.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.088;DP=167;Dels=0.00;FS=72.133;HaplotypeScore=202.3256;MLEAC=1;MLEAF=0.500;MQ=21.87;MQ0=8;MQRankSum=-0.252;QD=2.23;ReadPosRankSum=5.119;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,76:167:99:403,0,605 chrXIV 783404 . T C 385.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.086;DP=166;Dels=0.00;FS=0.940;HaplotypeScore=184.3346;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=9;MQRankSum=-1.886;QD=2.32;ReadPosRankSum=-1.514;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:106,54:166:99:415,0,618 chrXIV 783405 . G A 214.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DP=167;Dels=0.00;FS=34.210;HaplotypeScore=173.6032;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=9;MQRankSum=1.513;QD=1.28;ReadPosRankSum=-1.199;SB=-1.240e+02 GT:AD:DP:GQ:PL 0/1:118,47:167:99:244,0,747 chrXIV 783406 . G A 274.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=167;Dels=0.00;FS=34.523;HaplotypeScore=173.6032;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=9;MQRankSum=1.574;QD=1.64;ReadPosRankSum=-1.180;SB=-1.340e+02 GT:AD:DP:GQ:PL 0/1:119,48:167:99:304,0,740 chrXIV 783436 . A G 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.948;DP=168;Dels=0.00;FS=13.301;HaplotypeScore=54.6812;MLEAC=1;MLEAF=0.500;MQ=21.92;MQ0=8;MQRankSum=-0.620;QD=0.36;ReadPosRankSum=-2.707;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:142,26:168:90:90,0,974 chrXIV 783437 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;DP=170;Dels=0.00;FS=8.781;HaplotypeScore=85.5584;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=8;MQRankSum=-0.255;QD=0.84;ReadPosRankSum=5.726;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:139,31:170:99:172,0,909 chrXIV 783449 . G A 225.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.707;DP=133;Dels=0.00;FS=7.712;HaplotypeScore=143.6162;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=6;MQRankSum=-1.202;QD=1.69;ReadPosRankSum=3.612;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:100,33:133:99:255,0,640 chrXIV 783451 . C T 259.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;DP=128;Dels=0.00;FS=10.683;HaplotypeScore=138.8353;MLEAC=1;MLEAF=0.500;MQ=22.50;MQ0=6;MQRankSum=-1.462;QD=2.02;ReadPosRankSum=2.926;SB=-4.701e+01 GT:AD:DP:GQ:PL 0/1:82,33:128:99:289,0,528 chrXIV 783452 . G T 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.440;DP=126;Dels=0.00;FS=27.114;HaplotypeScore=135.9151;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=6;MQRankSum=-0.691;QD=0.29;ReadPosRankSum=2.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,20:126:67:67,0,719 chrXIV 783485 . G A 148.77 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=22.6751;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=3;MQRankSum=-0.045;QD=4.80;ReadPosRankSum=-2.096;SB=-4.262e+00 GT:AD:DP:GQ:PL 0/1:2,29:31:0:177,0,0 chrXIV 783490 . A C 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.5640;MLEAC=1;MLEAF=0.500;MQ=21.17;MQ0=4;MQRankSum=-1.045;QD=3.59;ReadPosRankSum=1.045;SB=0.012 GT:AD:DP:GQ:PL 0/1:3,26:29:28:134,0,28 chrXIV 783491 . G T 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.969;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=7.5640;MLEAC=1;MLEAF=0.500;MQ=21.17;MQ0=4;MQRankSum=0.849;QD=1.62;ReadPosRankSum=0.082;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,11:29:77:77,0,79 chrXIV 783507 . T A 92.26 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=19.01;MQ0=4;QD=4.61;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:125,15,0 chrXIV 783551 . G A 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=14.19;MQ0=4;QD=1.74;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:1,7:8:6:45,6,0 chrXIV 783643 . T C 59.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.7851;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=3.50;SB=-1.354e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:12:92,12,0 chrXIV 783659 . C T 23.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DP=20;Dels=0.00;FS=13.087;HaplotypeScore=32.5580;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=0;MQRankSum=-1.376;QD=1.16;ReadPosRankSum=1.799;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:3,17:20:13:53,0,13 chrXIV 783664 . A G 23.08 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=47.6861;MLEAC=1;MLEAF=0.500;MQ=24.53;MQ0=0;MQRankSum=-0.081;QD=0.74;ReadPosRankSum=1.638;SB=-7.061e+00 GT:AD:DP:GQ:PL 0/1:26,5:31:16:53,0,16 chrXIV 783682 . A G 219.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;DP=90;Dels=0.00;FS=7.355;HaplotypeScore=61.6648;MLEAC=1;MLEAF=0.500;MQ=24.91;MQ0=1;MQRankSum=2.026;QD=2.43;ReadPosRankSum=1.821;SB=-1.701e+01 GT:AD:DP:GQ:PL 0/1:66,24:90:99:249,0,318 chrXIV 783692 . G A 124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DP=126;Dels=0.02;FS=7.787;HaplotypeScore=144.9976;MLEAC=1;MLEAF=0.500;MQ=24.64;MQ0=3;MQRankSum=-1.966;QD=0.98;ReadPosRankSum=3.235;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:88,35:123:99:154,0,653 chrXIV 783722 . A G 443.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726;DP=193;Dels=0.00;FS=3.677;HaplotypeScore=150.2769;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=8;MQRankSum=-0.812;QD=2.30;ReadPosRankSum=-1.438;SB=-2.340e+02 GT:AD:DP:GQ:PL 0/1:123,68:193:99:473,0,746 chrXIV 783773 . A G 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.223;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=302.1030;MLEAC=1;MLEAF=0.500;MQ=22.63;MQ0=10;MQRankSum=0.678;QD=0.51;ReadPosRankSum=-4.174;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:154,38:192:99:127,0,1508 chrXIV 783779 . T C 139.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;DP=170;Dels=0.01;FS=10.290;HaplotypeScore=190.3726;MLEAC=1;MLEAF=0.500;MQ=22.76;MQ0=8;MQRankSum=-1.543;QD=0.82;ReadPosRankSum=4.347;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:141,28:169:99:169,0,1178 chrXIV 783780 . A G 305.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DP=168;Dels=0.01;FS=0.611;HaplotypeScore=191.3075;MLEAC=1;MLEAF=0.500;MQ=22.68;MQ0=8;MQRankSum=-0.766;QD=1.82;ReadPosRankSum=0.151;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:100,66:167:99:335,0,930 chrXIV 783781 . G A 104.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;DP=154;Dels=0.01;FS=25.246;HaplotypeScore=207.8424;MLEAC=1;MLEAF=0.500;MQ=22.19;MQ0=8;MQRankSum=2.600;QD=0.68;ReadPosRankSum=-2.279;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,20:153:99:134,0,1184 chrXIV 783783 . G T 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=185.8345;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=8;MQRankSum=-2.338;QD=1.47;ReadPosRankSum=3.367;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:109,38:147:99:247,0,940 chrXIV 783789 . C G 102.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;DP=131;Dels=0.01;FS=0.780;HaplotypeScore=168.5039;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=7;MQRankSum=0.040;QD=0.78;ReadPosRankSum=-1.519;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:92,32:130:99:132,0,970 chrXIV 783791 . G C 81.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;DP=123;Dels=0.01;FS=2.979;HaplotypeScore=104.3175;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=7;MQRankSum=0.624;QD=0.66;ReadPosRankSum=-0.358;SB=-9.601e+01 GT:AD:DP:GQ:PL 0/1:94,26:122:99:111,0,969 chrXIV 783796 . G T 883 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=107;Dels=0.00;FS=25.530;HaplotypeScore=85.2636;MLEAC=2;MLEAF=1.00;MQ=21.37;MQ0=6;MQRankSum=-1.316;QD=8.25;ReadPosRankSum=2.633;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:12,94:107:94:916,94,0 chrXIV 783832 . G A 211.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DP=61;Dels=0.00;FS=25.245;HaplotypeScore=58.4312;MLEAC=1;MLEAF=0.500;MQ=20.99;MQ0=3;MQRankSum=-1.193;QD=3.46;ReadPosRankSum=1.849;SB=-1.162e+02 GT:AD:DP:GQ:PL 0/1:20,40:61:2:240,0,2 chrXIV 783846 . A T 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.149;DP=47;Dels=0.00;FS=28.526;HaplotypeScore=19.5176;MLEAC=1;MLEAF=0.500;MQ=20.33;MQ0=3;MQRankSum=-1.361;QD=1.55;ReadPosRankSum=0.842;SB=-4.150e+01 GT:AD:DP:GQ:PL 0/1:33,14:47:45:103,0,45 chrXIV 783850 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=44;Dels=0.00;FS=52.430;HaplotypeScore=13.6215;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=3;MQRankSum=-1.966;QD=0.75;ReadPosRankSum=-0.701;SB=-1.825e+01 GT:AD:DP:GQ:PL 0/1:30,14:44:63:63,0,73 chrXIV 783880 . A G 45.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=112.2563;MLEAC=1;MLEAF=0.500;MQ=23.09;MQ0=0;MQRankSum=-1.640;QD=1.25;ReadPosRankSum=0.487;SB=-1.414e-01 GT:AD:DP:GQ:PL 0/1:22,12:36:12:75,0,12 chrXIV 783914 . T G 63.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.648;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=91.1969;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=0;MQRankSum=0.366;QD=1.44;ReadPosRankSum=0.366;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:2,42:44:12:96,12,0 chrXIV 783918 . G T 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.501;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=92.3231;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=1.290;QD=0.35;ReadPosRankSum=-1.806;SB=1.24 GT:AD:DP:GQ:PL 1/1:10,31:41:6:46,6,0 chrXIV 783920 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=74.7999;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=0.752;QD=0.37;ReadPosRankSum=-1.058;SB=1.24 GT:AD:DP:GQ:PL 1/1:15,28:43:6:47,6,0 chrXIV 783929 . A G 61.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.942;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=51.3721;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=0;MQRankSum=0.549;QD=1.18;ReadPosRankSum=0.824;SB=-4.352e+01 GT:AD:DP:GQ:PL 1/1:3,49:52:12:94,12,0 chrXIV 783962 . A T 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=60;Dels=0.00;FS=26.599;HaplotypeScore=29.8838;MLEAC=1;MLEAF=0.500;MQ=25.18;MQ0=0;MQRankSum=-0.702;QD=0.48;ReadPosRankSum=0.830;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,6:60:59:59,0,61 chrXIV 783968 . C A 126.13 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=36.3314;MLEAC=2;MLEAF=1.00;MQ=24.91;MQ0=0;QD=2.25;SB=-1.281e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:18:159,18,0 chrXIV 783972 . A G 92.30 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=44.2790;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=0;QD=1.78;SB=-9.031e+01 GT:AD:DP:GQ:PL 1/1:0,46:52:15:125,15,0 chrXIV 783984 . T G 113.13 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=86.8537;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=0;QD=2.51;SB=-1.721e+02 GT:AD:DP:GQ:PL 1/1:0,37:44:18:146,18,0 chrXIV 783985 . A G 82.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230;DP=45;Dels=0.02;FS=8.789;HaplotypeScore=97.4766;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=-0.592;QD=1.83;ReadPosRankSum=0.517;SB=-1.252e+02 GT:AD:DP:GQ:PL 0/1:14,30:44:10:112,0,10 chrXIV 784011 . G A 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;DP=37;Dels=0.03;FS=5.204;HaplotypeScore=137.7269;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=0;MQRankSum=1.052;QD=0.31;ReadPosRankSum=-0.091;SB=-6.793e-03 GT:AD:DP:GQ:PL 0/1:31,5:36:39:41,0,39 chrXIV 784013 . G A 17.15 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;DP=37;Dels=0.03;FS=2.021;HaplotypeScore=116.7749;MLEAC=1;MLEAF=0.500;MQ=24.86;MQ0=0;MQRankSum=0.456;QD=0.46;ReadPosRankSum=0.091;SB=1.94 GT:AD:DP:GQ:PL 0/1:20,6:36:18:47,0,18 chrXIV 784138 . G T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=39.5029;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;MQRankSum=-0.776;QD=0.41;ReadPosRankSum=-1.841;SB=1.24 GT:AD:DP:GQ:PL 1/1:36,8:44:6:49,6,0 chrXV 52 . A C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=74.5431;MLEAC=1;MLEAF=0.500;MQ=23.98;MQ0=3;MQRankSum=0.247;QD=0.57;ReadPosRankSum=-0.510;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,7:47:58:58,0,249 chrXV 137 . T A 37.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.768;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=32.2203;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=0;MQRankSum=2.994;QD=0.56;ReadPosRankSum=3.682;SB=-3.152e+00 GT:AD:DP:GQ:PL 0/1:11,55:66:12:67,0,12 chrXV 150 . C T 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;DP=72;Dels=0.00;FS=5.563;HaplotypeScore=12.9751;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-0.308;QD=1.13;ReadPosRankSum=1.176;SB=-6.524e-03 GT:AD:DP:GQ:PL 0/1:20,52:72:57:111,0,57 chrXV 151 . A C 167.12 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.1546;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;MQRankSum=1.010;QD=2.32;ReadPosRankSum=1.010;SB=-3.013e+01 GT:AD:DP:GQ:PL 1/1:1,71:72:5:198,5,0 chrXV 170 . T C 216.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=22.0834;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;MQRankSum=1.481;QD=3.13;ReadPosRankSum=1.632;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:27:249,27,0 chrXV 175 . T G 95.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;DP=67;Dels=0.00;FS=9.037;HaplotypeScore=22.0834;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=0;MQRankSum=0.503;QD=1.42;ReadPosRankSum=-0.412;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,43:67:82:125,0,82 chrXV 178 . C T 125.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=66;Dels=0.00;FS=8.905;HaplotypeScore=22.0834;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=-0.180;QD=1.89;ReadPosRankSum=-0.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,42:66:76:155,0,76 chrXV 183 . C T 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;DP=63;Dels=0.00;FS=4.376;HaplotypeScore=18.2345;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=0;MQRankSum=1.021;QD=2.13;ReadPosRankSum=-0.021;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,40:63:80:164,0,80 chrXV 193 . C T 278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=29.2601;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;MQRankSum=1.540;QD=5.05;ReadPosRankSum=1.668;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:1,53:55:33:311,33,0 chrXV 198 . T C 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DP=51;Dels=0.00;FS=15.852;HaplotypeScore=31.9598;MLEAC=1;MLEAF=0.500;MQ=28.37;MQ0=0;MQRankSum=-0.943;QD=2.43;ReadPosRankSum=1.061;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,29:51:75:154,0,75 chrXV 222 . G C 178.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;DP=41;Dels=0.00;FS=13.901;HaplotypeScore=48.9512;MLEAC=1;MLEAF=0.500;MQ=26.40;MQ0=0;MQRankSum=3.021;QD=4.34;ReadPosRankSum=-1.305;SB=-3.837e+01 GT:AD:DP:GQ:PL 0/1:9,29:41:50:208,0,50 chrXV 228 . C T 51.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=32;Dels=0.00;FS=1.702;HaplotypeScore=34.4072;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=1;MQRankSum=3.489;QD=1.59;ReadPosRankSum=1.383;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:12,20:32:81:81,0,83 chrXV 229 . A C 61.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;DP=33;Dels=0.00;FS=1.702;HaplotypeScore=42.9154;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=1;MQRankSum=3.117;QD=1.85;ReadPosRankSum=1.301;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:12,20:33:91:91,0,99 chrXV 239 . C A 52.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;DP=52;Dels=0.02;FS=1.656;HaplotypeScore=76.7925;MLEAC=1;MLEAF=0.500;MQ=24.00;MQ0=1;MQRankSum=-0.270;QD=1.00;ReadPosRankSum=0.540;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:22,27:51:82:82,0,243 chrXV 247 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;DP=60;Dels=0.02;FS=6.039;HaplotypeScore=79.7246;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=1;MQRankSum=3.925;QD=0.32;ReadPosRankSum=1.857;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:41,18:59:49:49,0,333 chrXV 249 . A G 20.05 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;DP=59;Dels=0.02;FS=15.707;HaplotypeScore=74.7544;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=1;MQRankSum=-1.784;QD=0.34;ReadPosRankSum=2.112;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:49,9:58:50:50,0,345 chrXV 281 . C T 161.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;DP=66;Dels=0.00;FS=4.611;HaplotypeScore=48.9500;MLEAC=1;MLEAF=0.500;MQ=23.51;MQ0=1;MQRankSum=-0.594;QD=2.44;ReadPosRankSum=-1.151;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:18,48:66:99:191,0,146 chrXV 293 . T A 159.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;DP=66;Dels=0.00;FS=8.731;HaplotypeScore=48.9937;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=-0.455;QD=2.41;ReadPosRankSum=-0.601;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:17,49:66:99:189,0,155 chrXV 301 . T C 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;DP=70;Dels=0.00;FS=12.961;HaplotypeScore=51.9656;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=0;MQRankSum=1.395;QD=0.40;ReadPosRankSum=0.218;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,20:70:58:58,0,313 chrXV 302 . G A 116.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;DP=68;Dels=0.00;FS=33.882;HaplotypeScore=44.7000;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=1.810;QD=1.71;ReadPosRankSum=-2.229;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,37:68:99:146,0,221 chrXV 322 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;DP=63;Dels=0.03;FS=7.788;HaplotypeScore=49.8962;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=2;MQRankSum=1.935;QD=0.17;ReadPosRankSum=0.583;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:37,24:61:40:40,0,171 chrXV 348 . T C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;DP=61;Dels=0.00;FS=1.492;HaplotypeScore=46.9090;MLEAC=1;MLEAF=0.500;MQ=24.10;MQ0=4;MQRankSum=-1.301;QD=0.46;ReadPosRankSum=1.285;SB=-8.501e+01 GT:AD:DP:GQ:PL 0/1:35,26:61:58:58,0,100 chrXV 371 . A G 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DP=93;Dels=0.00;FS=37.017;HaplotypeScore=38.0439;MLEAC=1;MLEAF=0.500;MQ=21.53;MQ0=9;MQRankSum=3.786;QD=1.35;ReadPosRankSum=3.387;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,28:93:84:156,0,84 chrXV 380 . C T 231.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.189;DP=98;Dels=0.00;FS=0.982;HaplotypeScore=33.6345;MLEAC=1;MLEAF=0.500;MQ=20.57;MQ0=10;MQRankSum=4.775;QD=2.36;ReadPosRankSum=-0.707;SB=-2.290e+02 GT:AD:DP:GQ:PL 0/1:37,61:98:25:261,0,25 chrXV 405 . C T 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.643;DP=107;Dels=0.00;FS=8.259;HaplotypeScore=29.0507;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=11;MQRankSum=4.651;QD=1.30;ReadPosRankSum=-1.664;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:58,48:107:99:169,0,136 chrXV 408 . A G 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DP=115;Dels=0.00;FS=4.258;HaplotypeScore=31.9426;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=11;MQRankSum=4.213;QD=1.48;ReadPosRankSum=-0.105;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:60,55:115:94:200,0,94 chrXV 430 . C A 123.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;DP=113;Dels=0.04;FS=40.648;HaplotypeScore=147.0745;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=6;MQRankSum=2.612;QD=1.09;ReadPosRankSum=-0.153;SB=-5.005e+00 GT:AD:DP:GQ:PL 0/1:36,73:109:99:153,0,115 chrXV 436 . A C 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;DP=114;Dels=0.04;FS=12.116;HaplotypeScore=123.4393;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=6;MQRankSum=-2.215;QD=0.18;ReadPosRankSum=-1.040;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,28:110:51:51,0,245 chrXV 447 . T C 120.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.415;DP=117;Dels=0.00;FS=22.032;HaplotypeScore=18.3582;MLEAC=1;MLEAF=0.500;MQ=21.29;MQ0=7;MQRankSum=0.928;QD=1.03;ReadPosRankSum=-2.563;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,21:117:99:150,0,234 chrXV 472 . A G 799.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;DP=187;Dels=0.00;FS=53.195;HaplotypeScore=98.9624;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=8;MQRankSum=5.519;QD=4.27;ReadPosRankSum=0.561;SB=-5.050e+02 GT:AD:DP:GQ:PL 0/1:128,59:187:99:829,0,507 chrXV 475 . C A 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;DP=207;Dels=0.00;FS=14.753;HaplotypeScore=113.8306;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=7;MQRankSum=-0.669;QD=1.27;ReadPosRankSum=-1.738;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:98,26:207:99:292,0,1045 chrXV 483 . C A 766.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=219;Dels=0.00;FS=66.242;HaplotypeScore=114.0026;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=5;MQRankSum=-6.114;QD=3.50;ReadPosRankSum=-2.589;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:76,143:219:99:796,0,1102 chrXV 495 . T C 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;DP=299;Dels=0.00;FS=164.391;HaplotypeScore=128.5828;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=4;MQRankSum=-6.601;QD=0.14;ReadPosRankSum=-0.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:178,120:299:72:72,0,2250 chrXV 525 . T C 1299.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.836;DP=411;Dels=0.00;FS=16.542;HaplotypeScore=118.8646;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=8;MQRankSum=-4.911;QD=3.16;ReadPosRankSum=1.709;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:226,184:411:99:1329,0,2615 chrXV 566 . A C 414.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.321;DP=310;Dels=0.00;FS=22.960;HaplotypeScore=273.6357;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=8;MQRankSum=-1.729;QD=1.34;ReadPosRankSum=-1.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:122,80:310:99:444,0,1677 chrXV 568 . T A 429.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=301;Dels=0.00;FS=33.541;HaplotypeScore=284.3872;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=8;MQRankSum=-3.814;QD=1.43;ReadPosRankSum=-0.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,75:300:99:459,0,1566 chrXV 575 . C T 2922 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=279;Dels=0.00;FS=0.000;HaplotypeScore=212.0627;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=8;QD=10.47;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,277:279:99:2955,336,0 chrXV 594 . G A 892 filter AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=6.5937;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=8;QD=5.61;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,158:159:99:925,102,0 chrXV 604 . G A 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.177;DP=156;Dels=0.00;FS=7.880;HaplotypeScore=15.5311;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=6;MQRankSum=0.639;QD=1.29;ReadPosRankSum=-1.761;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,20:156:99:231,0,400 chrXV 618 . T G 514 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.25;MQ0=2;QD=4.80;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:66:547,66,0 chrXV 636 . T G 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.569;DP=91;Dels=0.00;FS=47.128;HaplotypeScore=31.2827;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=3;MQRankSum=-2.754;QD=1.06;ReadPosRankSum=-3.387;SB=-4.687e+01 GT:AD:DP:GQ:PL 0/1:34,57:91:99:126,0,271 chrXV 637 . T C 502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=93;Dels=0.00;FS=3.040;HaplotypeScore=32.8601;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=3;MQRankSum=-2.368;QD=5.40;ReadPosRankSum=2.395;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:66:535,66,0 chrXV 649 . T C 352.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DP=102;Dels=0.00;FS=39.226;HaplotypeScore=12.0209;MLEAC=1;MLEAF=0.500;MQ=28.24;MQ0=2;MQRankSum=-1.132;QD=3.45;ReadPosRankSum=-5.127;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:30,72:102:99:382,0,214 chrXV 674 . T C 1391.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;DP=148;Dels=0.00;FS=45.627;HaplotypeScore=27.5637;MLEAC=1;MLEAF=0.500;MQ=33.24;MQ0=3;MQRankSum=1.892;QD=9.40;ReadPosRankSum=0.357;SB=-8.190e+02 GT:AD:DP:GQ:PL 0/1:35,113:148:52:1421,0,52 chrXV 683 . A C 1725 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=29.7268;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=2;QD=10.71;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,138:161:99:1758,201,0 chrXV 701 . C T 114.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.604;DP=162;Dels=0.00;FS=75.521;HaplotypeScore=11.5193;MLEAC=1;MLEAF=0.500;MQ=37.16;MQ0=2;MQRankSum=-5.406;QD=0.70;ReadPosRankSum=-0.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,47:162:99:144,0,1713 chrXV 732 . G T 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.695;DP=239;Dels=0.00;FS=55.346;HaplotypeScore=40.6479;MLEAC=1;MLEAF=0.500;MQ=37.37;MQ0=11;MQRankSum=-6.781;QD=0.71;ReadPosRankSum=2.442;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,51:239:99:199,0,2626 chrXV 764 . G T 2109.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=8.596;DP=318;Dels=0.00;FS=44.750;HaplotypeScore=111.2093;MLEAC=1;MLEAF=0.500;MQ=31.16;MQ0=16;MQRankSum=7.113;QD=6.63;ReadPosRankSum=2.860;SB=-8.770e+02 GT:AD:DP:GQ:PL 0/1:167,141:318:99:2139,0,1227 chrXV 765 . T C 385.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.098;DP=314;Dels=0.00;FS=89.299;HaplotypeScore=115.8968;MLEAC=1;MLEAF=0.500;MQ=31.23;MQ0=16;MQRankSum=2.354;QD=1.23;ReadPosRankSum=-0.847;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:266,48:314:99:415,0,2997 chrXV 770 . G A 4296.01 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=329;Dels=0.00;FS=0.000;HaplotypeScore=154.4993;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=16;QD=13.06;SB=-1.699e+03 GT:AD:DP:GQ:PL 1/1:0,329:329:99:4296,477,0 chrXV 774 . C T 462.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;DP=331;Dels=0.00;FS=78.308;HaplotypeScore=160.1362;MLEAC=1;MLEAF=0.500;MQ=30.98;MQ0=16;MQRankSum=2.328;QD=1.40;ReadPosRankSum=0.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:269,60:331:99:492,0,2755 chrXV 795 . C T 1465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;DP=359;Dels=0.00;FS=45.558;HaplotypeScore=59.8712;MLEAC=1;MLEAF=0.500;MQ=28.92;MQ0=18;MQRankSum=4.161;QD=4.08;ReadPosRankSum=-1.516;SB=-7.410e+02 GT:AD:DP:GQ:PL 0/1:229,130:359:99:1495,0,2074 chrXV 818 . T C 198.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.709;DP=361;Dels=0.00;FS=19.541;HaplotypeScore=53.9083;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=15;MQRankSum=-0.583;QD=0.55;ReadPosRankSum=2.319;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:301,58:360:99:228,0,3275 chrXV 820 . C T 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.847;DP=362;Dels=0.00;FS=102.887;HaplotypeScore=78.8144;MLEAC=1;MLEAF=0.500;MQ=25.41;MQ0=14;MQRankSum=-2.419;QD=0.92;ReadPosRankSum=1.851;SB=-3.501e+01 GT:AD:DP:GQ:PL 0/1:281,74:362:99:364,0,3080 chrXV 851 . A G 217.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.655;DP=244;Dels=0.00;FS=1.116;HaplotypeScore=211.3762;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=9;MQRankSum=-0.509;QD=0.89;ReadPosRankSum=-3.544;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:194,50:244:99:247,0,2397 chrXV 857 . C G 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;DP=234;Dels=0.01;FS=0.000;HaplotypeScore=235.7940;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=6;MQRankSum=-1.989;QD=0.06;ReadPosRankSum=-0.599;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:195,32:231:43:43,0,2249 chrXV 860 . T C 36.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.478;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=188.2149;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=5;MQRankSum=-0.916;QD=0.16;ReadPosRankSum=-0.002;SB=-2.007e+00 GT:AD:DP:GQ:PL 0/1:192,32:225:66:66,0,1916 chrXV 863 . C T 370.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;DP=220;Dels=0.00;FS=7.223;HaplotypeScore=159.8532;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=6;MQRankSum=-1.490;QD=1.68;ReadPosRankSum=-0.154;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:142,70:219:99:400,0,1698 chrXV 865 . C T 43.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.409;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=145.0987;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=6;MQRankSum=-0.318;QD=0.20;ReadPosRankSum=1.202;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:178,32:211:73:73,0,2136 chrXV 870 . A G 392.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.358;DP=212;Dels=0.00;FS=22.218;HaplotypeScore=171.9147;MLEAC=1;MLEAF=0.500;MQ=26.90;MQ0=6;MQRankSum=-2.100;QD=1.85;ReadPosRankSum=2.469;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:147,65:212:99:422,0,1862 chrXV 872 . G A 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.950;DP=207;Dels=0.00;FS=1.457;HaplotypeScore=172.3275;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=6;MQRankSum=0.147;QD=0.32;ReadPosRankSum=0.844;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:169,38:207:97:97,0,1981 chrXV 881 . G T 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.568;DP=202;Dels=0.00;FS=6.494;HaplotypeScore=156.1899;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=5;MQRankSum=0.685;QD=0.47;ReadPosRankSum=0.578;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:157,41:202:99:125,0,1768 chrXV 884 . T A 427.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.797;DP=192;Dels=0.00;FS=1.338;HaplotypeScore=118.2144;MLEAC=1;MLEAF=0.500;MQ=27.01;MQ0=5;MQRankSum=-3.736;QD=2.22;ReadPosRankSum=1.466;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:122,67:192:99:457,0,1196 chrXV 902 . C A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.770;DP=93;Dels=0.00;FS=15.504;HaplotypeScore=28.6358;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=4;MQRankSum=-0.781;QD=0.28;ReadPosRankSum=0.924;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:66,27:93:56:56,0,734 chrXV 935 . A T 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=66;Dels=0.00;FS=6.088;HaplotypeScore=5.0704;MLEAC=1;MLEAF=0.500;MQ=33.69;MQ0=1;MQRankSum=-1.226;QD=0.89;ReadPosRankSum=-0.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,17:66:89:89,0,726 chrXV 948 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6778;MLEAC=1;MLEAF=0.500;MQ=37.92;MQ0=1;MQRankSum=-0.178;QD=0.35;ReadPosRankSum=-1.018;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,9:63:52:52,0,754 chrXV 976 . T C 872 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=1;QD=15.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:905,102,0 chrXV 1157 . G T 1013.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.490;DP=209;Dels=0.00;FS=9.020;HaplotypeScore=4.2194;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=15;MQRankSum=-8.387;QD=4.85;ReadPosRankSum=-2.369;SB=-5.701e+01 GT:AD:DP:GQ:PL 0/1:125,84:209:99:1043,0,2661 chrXV 1161 . A G 975.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.041;DP=213;Dels=0.00;FS=9.072;HaplotypeScore=6.7883;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=15;MQRankSum=-7.781;QD=4.58;ReadPosRankSum=-0.414;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:128,85:213:99:1005,0,2973 chrXV 1245 . A G 1110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.469;DP=157;Dels=0.01;FS=7.682;HaplotypeScore=16.1727;MLEAC=1;MLEAF=0.500;MQ=38.92;MQ0=6;MQRankSum=-2.844;QD=7.07;ReadPosRankSum=-0.462;SB=-2.901e+01 GT:AD:DP:GQ:PL 0/1:87,67:156:99:1140,0,1940 chrXV 1273 . G A 987.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;DP=147;Dels=0.00;FS=3.637;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=13;MQRankSum=-1.134;QD=6.71;ReadPosRankSum=1.125;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,66:147:99:1017,0,1489 chrXV 1364 . G A 478.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.653;DP=80;Dels=0.00;FS=6.542;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=34.78;MQ0=19;MQRankSum=-2.366;QD=5.98;ReadPosRankSum=0.687;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:42,38:80:99:508,0,625 chrXV 1479 . C T 1154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.286;DP=242;Dels=0.00;FS=6.853;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=22;MQRankSum=-10.629;QD=4.77;ReadPosRankSum=-1.308;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:128,113:242:99:1184,0,2223 chrXV 1491 . C T 1008.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.239;DP=258;Dels=0.00;FS=6.856;HaplotypeScore=9.5076;MLEAC=1;MLEAF=0.500;MQ=44.17;MQ0=25;MQRankSum=-10.476;QD=3.91;ReadPosRankSum=-0.323;SB=-4.090e+02 GT:AD:DP:GQ:PL 0/1:150,108:258:99:1038,0,2705 chrXV 1515 . T A 294.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=254;Dels=0.00;FS=3.852;HaplotypeScore=6.6720;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=36;MQRankSum=-8.503;QD=1.16;ReadPosRankSum=1.489;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:165,89:254:99:324,0,3224 chrXV 1571 . A G 3594.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=220;Dels=0.00;FS=2.329;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=28;MQRankSum=-0.716;QD=16.34;ReadPosRankSum=3.765;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:5,211:220:99:3594,399,0 chrXV 1599 . G A 629.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;DP=182;Dels=0.00;FS=25.934;HaplotypeScore=7.8247;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=23;MQRankSum=-1.744;QD=3.46;ReadPosRankSum=0.043;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:112,70:182:99:659,0,1836 chrXV 1732 . T C 733 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=21.26;MQ0=22;QD=6.72;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:84:766,84,0 chrXV 1737 . C T 684 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=23;QD=6.28;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:81:717,81,0 chrXV 1755 . C T 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;DP=114;Dels=0.00;FS=8.117;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=24;MQRankSum=-1.820;QD=1.88;ReadPosRankSum=-1.391;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:75,39:114:99:244,0,644 chrXV 1782 . A T 1413.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;DP=160;Dels=0.00;FS=25.173;HaplotypeScore=12.8692;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=15;MQRankSum=4.404;QD=8.83;ReadPosRankSum=1.900;SB=-7.840e+02 GT:AD:DP:GQ:PL 0/1:49,111:160:99:1443,0,298 chrXV 1976 . A C 815 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.864;DP=99;Dels=0.00;FS=28.020;HaplotypeScore=13.5462;MLEAC=2;MLEAF=1.00;MQ=21.23;MQ0=16;MQRankSum=-3.172;QD=8.23;ReadPosRankSum=2.561;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:4,93:99:74:848,74,0 chrXV 2192 . T A 2346 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=147;Dels=0.00;FS=38.917;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=14;MQRankSum=4.465;QD=15.96;ReadPosRankSum=0.624;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:17,130:147:99:2379,238,0 chrXV 2294 . G C 2165 filter AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=24;QD=14.06;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,153:154:99:2198,246,0 chrXV 2487 . G T 1952.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DP=161;Dels=0.00;FS=40.221;HaplotypeScore=14.9849;MLEAC=1;MLEAF=0.500;MQ=35.39;MQ0=18;MQRankSum=2.648;QD=12.12;ReadPosRankSum=0.524;SB=-1.153e+03 GT:AD:DP:GQ:PL 0/1:40,118:161:99:1982,0,329 chrXV 2520 . T C 2211.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;DP=153;Dels=0.00;FS=55.106;HaplotypeScore=10.5548;MLEAC=1;MLEAF=0.500;MQ=39.52;MQ0=10;MQRankSum=4.928;QD=14.45;ReadPosRankSum=0.951;SB=-1.333e+03 GT:AD:DP:GQ:PL 0/1:35,118:153:99:2241,0,253 chrXV 2751 . T C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.001;DP=166;Dels=0.00;FS=63.119;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=-6.996;QD=0.20;ReadPosRankSum=-3.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:133,33:166:63:63,0,2560 chrXV 2773 . A T 178.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=194;Dels=0.00;FS=90.269;HaplotypeScore=13.4760;MLEAC=1;MLEAF=0.500;MQ=51.40;MQ0=0;MQRankSum=-8.071;QD=0.92;ReadPosRankSum=1.254;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:148,46:194:99:208,0,2718 chrXV 2795 . G T 200.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;DP=205;Dels=0.00;FS=91.462;HaplotypeScore=5.7087;MLEAC=1;MLEAF=0.500;MQ=51.17;MQ0=0;MQRankSum=-8.489;QD=0.98;ReadPosRankSum=4.541;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:155,50:205:99:230,0,2984 chrXV 3080 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.73;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3054,342,0 chrXV 3125 . C A 3100 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.5493;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.30;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3133,336,0 chrXV 3162 . C T 2743 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.60;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2776,300,0 chrXV 3184 . T G 2493 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.27;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2526,282,0 chrXV 3635 . C T 2990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.442;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=15.9442;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.257;QD=18.81;ReadPosRankSum=-1.553;SB=-1.828e+03 GT:AD:DP:GQ:PL 1/1:1,157:159:99:3023,330,0 chrXV 3831 . C T 2407 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.06;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2440,261,0 chrXV 3832 . C T 2422 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.18;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2455,258,0 chrXV 3852 . A C 2643 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.88;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2676,297,0 chrXV 3889 . A G 3279.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=162;Dels=0.00;FS=5.449;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.431;QD=20.24;ReadPosRankSum=2.956;SB=-1.657e+03 GT:AD:DP:GQ:PL 1/1:3,158:162:99:3279,363,0 chrXV 4179 . T C 2621 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.878;DP=130;Dels=0.00;FS=19.868;HaplotypeScore=12.7614;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.738;QD=20.16;ReadPosRankSum=4.122;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:6,124:130:99:2654,294,0 chrXV 4306 . C A 1362 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.33;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1395,147,0 chrXV 4406 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=7.292;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.710;QD=20.60;ReadPosRankSum=2.276;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1784,195,0 chrXV 4422 . T C 1588 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.05;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,83:88:99:1621,180,0 chrXV 4479 . A C 1732 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.24;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1765,195,0 chrXV 4503 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.84;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1938,204,0 chrXV 4604 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=13.6490;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=20.68;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1956,207,0 chrXV 4713 . A G 1959 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.77;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1992,228,0 chrXV 4892 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.92;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2188,237,0 chrXV 5496 . A G 590 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=11.57;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:69:623,69,0 chrXV 5520 . T A 606 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=13.47;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:639,69,0 chrXV 5676 . T A 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.577;QD=22.58;ReadPosRankSum=1.640;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1749,189,0 chrXV 5871 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.42;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1647,186,0 chrXV 5923 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.31;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2398,264,0 chrXV 6088 . G A 2061 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1952;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=16.10;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2094,231,0 chrXV 6095 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=15.65;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2021,225,0 chrXV 6115 . A C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0857;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;MQRankSum=-0.718;QD=11.94;ReadPosRankSum=1.450;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,122:124:99:1513,168,0 chrXV 6118 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0857;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=12.15;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,123:124:99:1539,174,0 chrXV 6150 . T C 1188 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.0342;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=9.98;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1221,135,0 chrXV 6170 . C A 1568 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;QD=12.96;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1601,174,0 chrXV 6324 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.02;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1967,210,0 chrXV 6453 . G A 2214 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5954;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=19.09;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2247,237,0 chrXV 6848 . A G 3290.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.250;DP=152;Dels=0.00;FS=4.714;HaplotypeScore=5.3319;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.594;QD=21.64;ReadPosRankSum=1.480;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:1,151:152:99:3290,360,0 chrXV 6873 . G A 3568.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.73;SB=-1.899e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3568,376,0 chrXV 7122 . T C 2470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=3.849;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.992;QD=18.85;ReadPosRankSum=1.679;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2503,282,0 chrXV 7665 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.95;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1795,195,0 chrXV 7751 . C G 1739 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.3961;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.32;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:90:99:1772,198,0 chrXV 8256 . T C 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.305;QD=23.87;ReadPosRankSum=2.359;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1322,147,0 chrXV 8298 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.86;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1059,117,0 chrXV 8578 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2435,258,0 chrXV 9255 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.83;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1322,144,0 chrXV 9266 . G T 1517 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.20;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1550,162,0 chrXV 10492 . G A 3890.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.85;SB=-2.247e+03 GT:AD:DP:GQ:PL 1/1:0,175:178:99:3890,426,0 chrXV 10516 . C T 3493.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.70;SB=-1.597e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3493,378,0 chrXV 10618 . T G 2745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=123;Dels=0.00;FS=8.753;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.091;QD=22.32;ReadPosRankSum=3.372;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:4,119:123:99:2778,306,0 chrXV 10682 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.89;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2345,267,0 chrXV 10733 . T G 2140 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.40;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2173,237,0 chrXV 10845 . A G 3138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.2141;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=0.200;QD=21.35;ReadPosRankSum=1.685;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:1,146:147:99:3171,354,0 chrXV 10909 . C T 2292 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=19.76;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2325,246,0 chrXV 10912 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;MQRankSum=0.177;QD=19.08;ReadPosRankSum=2.387;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:2,116:119:99:2303,258,0 chrXV 11046 . T C 294 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=14.70;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:36:327,36,0 chrXV 11172 . A T 100.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=10.50;MQ0=31;MQRankSum=1.932;QD=2.28;ReadPosRankSum=0.536;SB=-2.776e+01 GT:AD:DP:GQ:PL 1/1:23,21:44:15:133,15,0 chrXV 11183 . A G 102.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.23;MQ0=31;MQRankSum=1.580;QD=2.49;ReadPosRankSum=0.296;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:31,10:41:15:135,15,0 chrXV 11423 . T G 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=17;Dels=0.00;FS=4.393;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=6;MQRankSum=-1.739;QD=2.70;ReadPosRankSum=1.423;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:1,16:17:9:78,9,0 chrXV 11612 . G A 2111 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.2141;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;QD=22.95;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2144,243,0 chrXV 11810 . C A 1918 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=102;Dels=0.00;FS=8.332;HaplotypeScore=11.0475;MLEAC=2;MLEAF=1.00;MQ=41.93;MQ0=10;MQRankSum=3.358;QD=18.80;ReadPosRankSum=-3.358;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:13,89:102:99:1951,216,0 chrXV 11858 . A G 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DP=137;Dels=0.00;FS=4.175;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=1;MQRankSum=1.681;QD=18.79;ReadPosRankSum=1.681;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2607,291,0 chrXV 11913 . A G 2055 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=155;Dels=0.00;FS=2.421;HaplotypeScore=11.4392;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;MQRankSum=-2.227;QD=13.26;ReadPosRankSum=2.072;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:3,152:155:99:2088,231,0 chrXV 11930 . T C 1813 SnpCluster AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=12.86;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,141:141:99:1846,207,0 chrXV 11935 . C T 1836 SnpCluster AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.7156;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=13.70;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:1869,198,0 chrXV 11940 . A G 1753 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;DP=133;Dels=0.00;FS=2.472;HaplotypeScore=21.2572;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;MQRankSum=-1.493;QD=13.18;ReadPosRankSum=2.947;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:3,130:133:99:1786,201,0 chrXV 11962 . G A 1058.21 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.349;DP=117;Dels=0.00;FS=14.196;HaplotypeScore=5.1041;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.201;QD=9.04;ReadPosRankSum=6.483;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:19,97:117:16:1091,16,0 chrXV 11966 . A G 1165 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=98;Dels=0.00;FS=8.772;HaplotypeScore=1.9494;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.799;QD=11.89;ReadPosRankSum=3.367;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:4,94:98:99:1198,129,0 chrXV 11969 . A G 1151 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.24;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1184,129,0 chrXV 11970 . A G 1181 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.56;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1214,129,0 chrXV 11972 . A T 1184 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.60;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1217,129,0 chrXV 11984 . A G 867 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.763;DP=113;Dels=0.00;FS=15.652;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.417;QD=7.67;ReadPosRankSum=3.763;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:5,108:113:99:900,99,0 chrXV 11989 . C T 568 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.68;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:66:601,66,0 chrXV 11990 . A G 576 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.78;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:66:609,66,0 chrXV 11992 . T A 606 SnpCluster AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.13;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:66:639,66,0 chrXV 11998 . C T 510 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=5.67;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:60:543,60,0 chrXV 12017 . G T 641 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=7.20;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:72:674,72,0 chrXV 12027 . G A 558 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=6.27;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:63:591,63,0 chrXV 12028 . T C 507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.82;MQ0=0;MQRankSum=-1.576;QD=5.63;ReadPosRankSum=1.693;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:60:540,60,0 chrXV 12048 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=9.95;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:889,99,0 chrXV 12121 . A G 2095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=111;Dels=0.00;FS=6.723;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.996;QD=18.87;ReadPosRankSum=2.405;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:2,108:111:99:2128,237,0 chrXV 12243 . T C 1584 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.32;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1617,180,0 chrXV 12271 . C G 1543 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=19.29;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:80:99:1576,174,0 chrXV 12324 . G C 1690 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=21.95;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1723,186,0 chrXV 12676 . A T 526 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=13.15;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:63:559,63,0 chrXV 12679 . C G 505 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=12.62;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:60:538,60,0 chrXV 12690 . A G 396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;MQRankSum=-2.310;QD=11.31;ReadPosRankSum=2.310;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:48:429,48,0 chrXV 12697 . C A 368 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=10.51;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:401,45,0 chrXV 12701 . A G 334 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=9.28;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:42:367,42,0 chrXV 12704 . T C 354 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=9.57;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:45:387,45,0 chrXV 12714 . T C 523 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=9.87;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:63:556,63,0 chrXV 12721 . A C 598 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=10.31;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:75:631,75,0 chrXV 12725 . C T 499 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=10.18;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:57:532,57,0 chrXV 12728 . C T 482 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=9.27;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:57:515,57,0 chrXV 12733 . G A 585 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=11.47;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:66:618,66,0 chrXV 12739 . C T 603 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=8.37;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:69:636,69,0 chrXV 12770 . C A 1545 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=17.56;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1578,168,0 chrXV 12844 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3710;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.67;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1612,171,0 chrXV 12898 . G C 835 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.18;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:868,93,0 chrXV 12923 . G T 480 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=10.21;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:54:513,54,0 chrXV 12936 . C A 197.03 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=5.33;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:24:230,24,0 chrXV 12943 . A G 101.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=5.149;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-1.636;QD=2.81;ReadPosRankSum=1.540;SB=-2.683e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:15:134,15,0 chrXV 12944 . T A 118.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.517;DP=40;Dels=0.00;FS=5.145;HaplotypeScore=28.4030;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-2.945;QD=2.96;ReadPosRankSum=3.558;SB=-2.783e+02 GT:AD:DP:GQ:PL 1/1:5,35:40:15:151,15,0 chrXV 13395 . A T 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=60;Dels=0.00;FS=11.193;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.018;QD=23.85;ReadPosRankSum=2.849;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:99:1464,156,0 chrXV 13893 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1420,150,0 chrXV 14011 . G A 107.26 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=2.06;SB=-4.303e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:15:140,15,0 chrXV 14017 . G A 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.824;DP=54;Dels=0.00;FS=25.204;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=47.49;MQ0=0;MQRankSum=-0.542;QD=1.44;ReadPosRankSum=-3.129;SB=-1.350e+02 GT:AD:DP:GQ:PL 0/1:29,22:54:74:108,0,74 chrXV 14037 . C T 673 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=13.20;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:78:706,78,0 chrXV 14161 . T G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=3.082;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.447;QD=21.03;ReadPosRankSum=2.365;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1253,141,0 chrXV 14199 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.19;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1339,141,0 chrXV 14256 . A G 1241 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.77;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1274,141,0 chrXV 14268 . A T 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.903;QD=17.75;ReadPosRankSum=1.683;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1293,141,0 chrXV 14399 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.862;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.495;QD=17.38;ReadPosRankSum=1.685;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1302,141,0 chrXV 14447 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.854;QD=19.25;ReadPosRankSum=1.683;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1419,159,0 chrXV 14798 . C A 2647 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.51;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2680,282,0 chrXV 14852 . A G 2069 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.34;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2102,228,0 chrXV 14884 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2029,216,0 chrXV 14956 . T A 2660 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5654;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.74;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2693,285,0 chrXV 14994 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.12;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2179,243,0 chrXV 15151 . G C 2934 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.18;SB=-1.786e+03 GT:AD:DP:GQ:PL 1/1:0,151:153:99:2967,327,0 chrXV 15476 . C A 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=3.259;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.385;QD=21.84;ReadPosRankSum=1.684;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1627,153,0 chrXV 15520 . C A 1740 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.33;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1773,192,0 chrXV 15534 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.71;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1814,195,0 chrXV 15548 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.11;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1541,168,0 chrXV 15626 . A G 2075 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.06;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2108,231,0 chrXV 15682 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=21.47;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1987,219,0 chrXV 15697 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-0.266;QD=19.00;ReadPosRankSum=-0.799;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1515,152,0 chrXV 15727 . G A 957 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=13.87;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:990,108,0 chrXV 15731 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=13.68;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:977,105,0 chrXV 15753 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=0;QD=11.69;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:96:875,96,0 chrXV 15756 . A G 823 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=11.27;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:96:856,96,0 chrXV 15782 . C A 744 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=9.07;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:84:777,84,0 chrXV 15789 . A C 691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;MQRankSum=0.433;QD=8.64;ReadPosRankSum=1.689;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:81:724,81,0 chrXV 15802 . C T 732 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.1573;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=8.93;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:87:765,87,0 chrXV 15948 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.68;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1398,147,0 chrXV 15966 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.14;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1342,147,0 chrXV 16012 . A T 1310 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=16.37;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1343,153,0 chrXV 16136 . G A 2442 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=22.20;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2475,264,0 chrXV 16219 . A G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.170;QD=21.92;ReadPosRankSum=1.698;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2269,252,0 chrXV 16294 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=51.2249;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.93;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1388,150,0 chrXV 16329 . T A 945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.278;QD=15.49;ReadPosRankSum=1.675;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:978,105,0 chrXV 16330 . T C 953 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=15.37;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:986,111,0 chrXV 16421 . T C 1943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.4580;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.017;QD=19.63;ReadPosRankSum=1.697;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1976,216,0 chrXV 16824 . A C 2695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=142;Dels=0.00;FS=3.741;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.585;QD=18.98;ReadPosRankSum=1.708;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2728,300,0 chrXV 16841 . A T 2900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=156;Dels=0.00;FS=3.358;HaplotypeScore=8.4305;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.178;QD=18.59;ReadPosRankSum=1.643;SB=-2.014e+03 GT:AD:DP:GQ:PL 1/1:1,155:156:99:2933,309,0 chrXV 16960 . A G 2926 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.32;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2959,339,0 chrXV 16970 . T C 3162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.883;QD=20.94;ReadPosRankSum=1.709;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,150:151:99:3195,348,0 chrXV 17031 . C A 1657 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=17.44;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1690,189,0 chrXV 17033 . G A 1700 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=17.53;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1733,183,0 chrXV 17074 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.11;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1531,168,0 chrXV 17077 . A G 1511 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=15.58;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1544,171,0 chrXV 17103 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.07;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2064,225,0 chrXV 17662 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.39;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1578,165,0 chrXV 17683 . C T 1249 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=14.87;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1282,144,0 chrXV 17809 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.32;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1354,144,0 chrXV 17831 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.27;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1249,138,0 chrXV 17951 . G A 1026 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.213;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.8259;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.058;QD=17.10;ReadPosRankSum=1.155;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1059,117,0 chrXV 17955 . A G 1096 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=5.8259;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=17.97;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1129,126,0 chrXV 18115 . T C 2087 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.27;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2120,234,0 chrXV 18165 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.93;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1756,183,0 chrXV 18557 . C T 2623 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2656,276,0 chrXV 19033 . A C 1259 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.98;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1292,141,0 chrXV 19181 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.04;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1007,114,0 chrXV 19449 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.87;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1035,114,0 chrXV 19457 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.83;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1050,117,0 chrXV 19474 . C A 911 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.86;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:944,105,0 chrXV 19641 . G C 2275 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9382;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.50;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2308,264,0 chrXV 19911 . G A 2193 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0470;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.69;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2226,243,0 chrXV 20317 . T C 2313 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.4736;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.11;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2346,258,0 chrXV 20484 . A T 2180 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2213,240,0 chrXV 20601 . T G 2109 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2142,237,0 chrXV 22560 . T C 1982 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.485;DP=108;Dels=0.00;FS=10.238;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=9;MQRankSum=2.846;QD=18.35;ReadPosRankSum=2.491;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:15,93:108:99:2015,202,0 chrXV 22633 . G T 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=3;QD=19.94;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1369,147,0 chrXV 22651 . A G 1199 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=4;QD=19.03;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1232,141,0 chrXV 22765 . T C 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=131;Dels=0.00;FS=7.747;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=44.57;MQ0=2;MQRankSum=-2.940;QD=1.09;ReadPosRankSum=-0.467;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:104,26:131:99:173,0,1739 chrXV 22833 . G A 713.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.117;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=28.9983;MLEAC=1;MLEAF=0.500;MQ=45.44;MQ0=2;MQRankSum=-4.660;QD=4.46;ReadPosRankSum=0.893;SB=-2.280e+02 GT:AD:DP:GQ:PL 0/1:108,50:160:99:743,0,1972 chrXV 22834 . A G 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;DP=160;Dels=0.00;FS=40.174;HaplotypeScore=29.7870;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=2;MQRankSum=-3.770;QD=0.31;ReadPosRankSum=-0.363;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:139,21:160:79:79,0,2708 chrXV 23065 . G T 1054.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.702;DP=261;Dels=0.00;FS=26.191;HaplotypeScore=12.8471;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=15;MQRankSum=3.692;QD=4.04;ReadPosRankSum=-3.278;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:163,98:261:99:1084,0,1624 chrXV 23283 . T C 3176 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=18.9942;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=32;MQRankSum=-1.113;QD=15.72;ReadPosRankSum=1.691;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:1,199:202:99:3209,378,0 chrXV 23443 . T C 846.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.601;DP=367;Dels=0.00;FS=0.000;HaplotypeScore=19.2043;MLEAC=1;MLEAF=0.500;MQ=39.48;MQ0=14;MQRankSum=-8.377;QD=2.31;ReadPosRankSum=3.168;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/1:263,102:367:99:876,0,4360 chrXV 23890 . G A 102.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.348;DP=197;Dels=0.00;FS=44.557;HaplotypeScore=12.0331;MLEAC=1;MLEAF=0.500;MQ=26.38;MQ0=21;MQRankSum=-0.616;QD=0.52;ReadPosRankSum=1.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:159,38:197:99:132,0,1456 chrXV 23953 . C G 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DP=192;Dels=0.00;FS=6.095;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=36.02;MQ0=16;MQRankSum=-2.793;QD=0.51;ReadPosRankSum=-1.222;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:153,38:192:99:128,0,2500 chrXV 24010 . T C 1540.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;DP=138;Dels=0.00;FS=48.746;HaplotypeScore=15.7408;MLEAC=1;MLEAF=0.500;MQ=31.14;MQ0=17;MQRankSum=4.183;QD=11.16;ReadPosRankSum=1.820;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:36,102:138:99:1570,0,257 chrXV 24046 . G A 219.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.497;DP=110;Dels=0.00;FS=84.199;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=15;MQRankSum=0.698;QD=1.99;ReadPosRankSum=0.744;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:85,25:110:99:249,0,1097 chrXV 24109 . G A 1118 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=107;Dels=0.00;FS=1.691;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=9;MQRankSum=-1.386;QD=10.45;ReadPosRankSum=-0.956;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:12,95:107:63:1151,63,0 chrXV 24115 . T C 985.02 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.142;DP=101;Dels=0.00;FS=3.807;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=9;MQRankSum=-1.367;QD=9.75;ReadPosRankSum=-1.591;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:11,89:101:26:1018,26,0 chrXV 24136 . A G 750.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DP=104;Dels=0.00;FS=1.700;HaplotypeScore=12.2605;MLEAC=1;MLEAF=0.500;MQ=35.17;MQ0=8;MQRankSum=2.577;QD=7.21;ReadPosRankSum=-0.266;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:46,58:104:99:780,0,398 chrXV 24151 . A G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=110;Dels=0.00;FS=4.450;HaplotypeScore=12.8517;MLEAC=1;MLEAF=0.500;MQ=38.18;MQ0=6;MQRankSum=-3.616;QD=0.61;ReadPosRankSum=2.173;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:85,25:110:97:97,0,1199 chrXV 24190 . C G 1568 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3824;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=17.04;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:92:99:1601,183,0 chrXV 24235 . G A 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.776;DP=111;Dels=0.00;FS=52.930;HaplotypeScore=14.3842;MLEAC=1;MLEAF=0.500;MQ=39.86;MQ0=2;MQRankSum=-2.356;QD=0.81;ReadPosRankSum=0.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,19:111:99:120,0,1228 chrXV 24299 . C T 449.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.709;DP=140;Dels=0.00;FS=31.335;HaplotypeScore=12.9656;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=2;MQRankSum=-4.905;QD=3.21;ReadPosRankSum=3.847;SB=-2.510e+02 GT:AD:DP:GQ:PL 0/1:95,45:140:99:479,0,1518 chrXV 24303 . G A 380.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;DP=144;Dels=0.00;FS=17.935;HaplotypeScore=11.5943;MLEAC=1;MLEAF=0.500;MQ=45.91;MQ0=2;MQRankSum=-5.889;QD=2.64;ReadPosRankSum=3.995;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:97,44:144:99:410,0,1642 chrXV 24335 . T A 254.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;DP=135;Dels=0.00;FS=2.552;HaplotypeScore=15.6519;MLEAC=1;MLEAF=0.500;MQ=43.10;MQ0=2;MQRankSum=-4.550;QD=1.88;ReadPosRankSum=-3.119;SB=-1.290e+02 GT:AD:DP:GQ:PL 0/1:100,35:135:99:284,0,1794 chrXV 24352 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=2;QD=19.43;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2248,249,0 chrXV 24394 . G C 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;DP=121;Dels=0.00;FS=25.712;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=43.70;MQ0=2;MQRankSum=-5.209;QD=0.88;ReadPosRankSum=-2.206;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,25:121:99:137,0,1764 chrXV 24403 . T C 116.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;DP=111;Dels=0.00;FS=41.929;HaplotypeScore=6.7813;MLEAC=1;MLEAF=0.500;MQ=43.27;MQ0=1;MQRankSum=-3.970;QD=1.05;ReadPosRankSum=-0.973;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,24:111:99:146,0,1744 chrXV 24407 . T C 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=115;Dels=0.00;FS=9.098;HaplotypeScore=6.6231;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=1;MQRankSum=-1.515;QD=18.99;ReadPosRankSum=3.380;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:4,110:115:99:2217,240,0 chrXV 24439 . G C 2075.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;DP=158;Dels=0.00;FS=10.454;HaplotypeScore=9.6467;MLEAC=1;MLEAF=0.500;MQ=44.46;MQ0=1;MQRankSum=6.649;QD=13.13;ReadPosRankSum=-1.533;SB=-9.330e+02 GT:AD:DP:GQ:PL 0/1:52,103:158:99:2105,0,717 chrXV 24486 . G C 3069 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=1;QD=22.08;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3102,345,0 chrXV 24643 . C T 144.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.084;DP=79;Dels=0.00;FS=9.459;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=51.17;MQ0=0;MQRankSum=-5.570;QD=1.82;ReadPosRankSum=-1.516;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:57,22:79:99:174,0,1082 chrXV 24654 . A G 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.323;DP=73;Dels=0.00;FS=12.842;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=52.07;MQ0=0;MQRankSum=-5.494;QD=0.18;ReadPosRankSum=1.390;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,13:73:43:43,0,1101 chrXV 24655 . T C 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=73;Dels=0.00;FS=12.926;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=0;MQRankSum=-5.486;QD=0.36;ReadPosRankSum=1.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,13:73:56:56,0,1086 chrXV 24700 . A C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;DP=92;Dels=0.00;FS=17.020;HaplotypeScore=7.1452;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=0;MQRankSum=-6.381;QD=0.11;ReadPosRankSum=-1.577;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,19:92:40:40,0,1343 chrXV 24703 . T C 38.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.816;DP=91;Dels=0.00;FS=14.512;HaplotypeScore=6.3565;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=0;MQRankSum=-6.476;QD=0.42;ReadPosRankSum=-2.304;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,19:91:68:68,0,1323 chrXV 24767 . C G 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.839;DP=100;Dels=0.00;FS=22.609;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-6.209;QD=0.95;ReadPosRankSum=0.185;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,20:100:99:125,0,1464 chrXV 24811 . T C 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.255;DP=119;Dels=0.00;FS=34.093;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=-6.540;QD=0.11;ReadPosRankSum=-1.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,22:119:43:43,0,1888 chrXV 25318 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=20.20;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:99:1245,141,0 chrXV 25319 . T A 1301 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.12;MQ0=0;QD=21.68;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1334,141,0 chrXV 25746 . T C 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;DP=153;Dels=0.00;FS=47.624;HaplotypeScore=9.6671;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=15;MQRankSum=-4.013;QD=0.84;ReadPosRankSum=-0.159;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,37:153:99:158,0,1677 chrXV 25953 . C T 557.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.653;DP=201;Dels=0.00;FS=11.421;HaplotypeScore=9.7056;MLEAC=1;MLEAF=0.500;MQ=30.84;MQ0=25;MQRankSum=-0.511;QD=2.77;ReadPosRankSum=0.182;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:135,66:201:99:587,0,2097 chrXV 25974 . C T 281.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DP=206;Dels=0.00;FS=29.267;HaplotypeScore=13.5396;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=28;MQRankSum=1.853;QD=1.36;ReadPosRankSum=1.053;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:149,56:206:99:311,0,2337 chrXV 26088 . A C 1051.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;DP=127;Dels=0.00;FS=24.340;HaplotypeScore=14.7376;MLEAC=1;MLEAF=0.500;MQ=32.84;MQ0=17;MQRankSum=1.374;QD=8.28;ReadPosRankSum=2.880;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:46,78:127:99:1081,0,495 chrXV 26097 . C T 271.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DP=110;Dels=0.00;FS=17.345;HaplotypeScore=6.3007;MLEAC=1;MLEAF=0.500;MQ=35.54;MQ0=13;MQRankSum=-1.582;QD=2.46;ReadPosRankSum=-4.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,32:110:99:301,0,1186 chrXV 26106 . C T 1361.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;DP=106;Dels=0.00;FS=11.895;HaplotypeScore=10.6565;MLEAC=1;MLEAF=0.500;MQ=37.94;MQ0=6;MQRankSum=-0.440;QD=12.84;ReadPosRankSum=4.283;SB=-4.770e+02 GT:AD:DP:GQ:PL 0/1:25,80:106:99:1391,0,124 chrXV 26112 . T C 1306 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=6;MQRankSum=-0.052;QD=13.06;ReadPosRankSum=5.224;SB=-4.717e+02 GT:AD:DP:GQ:PL 1/1:20,80:100:32:1339,32,0 chrXV 26211 . T A 1673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.926;DP=149;Dels=0.00;FS=5.338;HaplotypeScore=12.6362;MLEAC=1;MLEAF=0.500;MQ=38.06;MQ0=22;MQRankSum=5.244;QD=11.23;ReadPosRankSum=2.830;SB=-6.230e+02 GT:AD:DP:GQ:PL 0/1:45,104:149:99:1703,0,232 chrXV 26289 . C T 1657.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.302;DP=227;Dels=0.00;FS=12.414;HaplotypeScore=19.6369;MLEAC=1;MLEAF=0.500;MQ=38.26;MQ0=10;MQRankSum=4.811;QD=7.30;ReadPosRankSum=0.239;SB=-9.290e+02 GT:AD:DP:GQ:PL 0/1:115,112:227:99:1687,0,1487 chrXV 26304 . C G 1035.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DP=212;Dels=0.00;FS=18.906;HaplotypeScore=12.6301;MLEAC=1;MLEAF=0.500;MQ=37.78;MQ0=11;MQRankSum=-4.116;QD=4.88;ReadPosRankSum=0.587;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:123,87:212:99:1065,0,1708 chrXV 26754 . C T 81.51 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=17.49;MQ0=15;QD=3.26;SB=-4.542e-01 GT:AD:DP:GQ:PL 1/1:0,25:25:12:114,12,0 chrXV 26859 . T C 1129 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=10;QD=18.21;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1162,132,0 chrXV 27033 . T C 154.06 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=50;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=36;MQRankSum=-0.744;QD=3.08;ReadPosRankSum=1.488;SB=-4.743e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:21:187,21,0 chrXV 27254 . A T 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=8.294;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=36.99;MQ0=2;MQRankSum=-6.471;QD=2.90;ReadPosRankSum=0.234;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,26:112:99:355,0,1676 chrXV 27306 . C T 595.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;DP=121;Dels=0.00;FS=13.569;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.36;MQ0=26;MQRankSum=-6.994;QD=4.92;ReadPosRankSum=-0.806;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:79,42:121:99:625,0,1246 chrXV 27321 . T C 287.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;DP=101;Dels=0.00;FS=13.482;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=27.53;MQ0=37;MQRankSum=-5.675;QD=2.84;ReadPosRankSum=-0.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,30:101:99:317,0,918 chrXV 27322 . C G 293.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;DP=101;Dels=0.00;FS=13.210;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=38;MQRankSum=-5.650;QD=2.90;ReadPosRankSum=-0.153;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,29:101:99:323,0,840 chrXV 27515 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.3063;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=0;QD=21.70;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1856,207,0 chrXV 27588 . A G 67.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;DP=82;Dels=0.00;FS=7.727;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=17;MQRankSum=-1.262;QD=0.82;ReadPosRankSum=-2.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,19:82:97:97,0,660 chrXV 27589 . T A 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;DP=83;Dels=0.00;FS=10.176;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=17;MQRankSum=-1.810;QD=0.96;ReadPosRankSum=-2.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:64,19:83:99:110,0,677 chrXV 27624 . T C 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;DP=108;Dels=0.00;FS=16.035;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=26;MQRankSum=-2.350;QD=1.78;ReadPosRankSum=-0.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:80,27:108:99:222,0,680 chrXV 27644 . T C 148.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;DP=109;Dels=0.00;FS=24.695;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=24.99;MQ0=30;MQRankSum=-2.591;QD=1.36;ReadPosRankSum=-1.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,25:109:99:178,0,721 chrXV 28378 . A G 296 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=2;QD=19.73;SB=-7.607e-03 GT:AD:DP:GQ:PL 1/1:0,14:15:36:329,36,0 chrXV 28559 . T C 593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=0.231;QD=19.77;ReadPosRankSum=1.502;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:69:626,69,0 chrXV 29592 . A G 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.826;DP=104;Dels=0.00;FS=6.274;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=5.514;QD=17.86;ReadPosRankSum=5.632;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:13,91:104:99:1890,213,0 chrXV 29606 . C G 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;DP=117;Dels=0.00;FS=17.327;HaplotypeScore=6.6775;MLEAC=1;MLEAF=0.500;MQ=46.59;MQ0=0;MQRankSum=-7.525;QD=0.19;ReadPosRankSum=-4.871;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:86,30:117:52:52,0,1448 chrXV 29618 . C T 202.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;DP=129;Dels=0.00;FS=19.425;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=43.70;MQ0=0;MQRankSum=-8.150;QD=1.57;ReadPosRankSum=-3.448;SB=-2.110e+02 GT:AD:DP:GQ:PL 0/1:80,49:129:99:232,0,1236 chrXV 29642 . A G 634.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;DP=136;Dels=0.00;FS=21.250;HaplotypeScore=3.2945;MLEAC=1;MLEAF=0.500;MQ=42.90;MQ0=0;MQRankSum=-5.383;QD=4.66;ReadPosRankSum=2.174;SB=-3.970e+02 GT:AD:DP:GQ:PL 0/1:59,77:136:99:664,0,808 chrXV 29645 . G A 694.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.229;DP=132;Dels=0.00;FS=24.798;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=42.72;MQ0=0;MQRankSum=-5.287;QD=5.26;ReadPosRankSum=2.688;SB=-4.340e+02 GT:AD:DP:GQ:PL 0/1:53,79:132:99:724,0,697 chrXV 29654 . A T 759.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;DP=133;Dels=0.00;FS=16.100;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=42.24;MQ0=0;MQRankSum=-4.280;QD=5.71;ReadPosRankSum=5.142;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:48,85:133:99:789,0,545 chrXV 29669 . G A 994.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;DP=130;Dels=0.00;FS=5.721;HaplotypeScore=10.5734;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-1.236;QD=7.65;ReadPosRankSum=5.514;SB=-6.630e+02 GT:AD:DP:GQ:PL 0/1:29,101:130:99:1024,0,228 chrXV 29810 . G A 2960 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.09;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2993,315,0 chrXV 29825 . C T 2825 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.62;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2858,306,0 chrXV 29909 . G T 2108 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.9237;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.08;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2141,234,0 chrXV 29966 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=16.45;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1579,171,0 chrXV 29976 . G C 1545 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.77;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1578,171,0 chrXV 29984 . T A 1317 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=12.66;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1350,156,0 chrXV 30136 . G T 2134 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.5717;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.23;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2167,240,0 chrXV 30179 . C T 3017 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.68;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3050,321,0 chrXV 30248 . G A 2599 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6915;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.56;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2632,288,0 chrXV 30265 . C G 2737 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.98;SB=-1.593e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2770,306,0 chrXV 30338 . G T 2540 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.09;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2573,288,0 chrXV 30485 . G A 2322 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.8731;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.02;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2355,249,0 chrXV 30582 . C G 2147 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.2604;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.70;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2180,243,0 chrXV 30707 . A G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.153;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=-0.279;QD=19.43;ReadPosRankSum=1.620;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1859,210,0 chrXV 30904 . C T 2547 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0369;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=22.34;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2580,285,0 chrXV 30947 . T A 1784 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=1;QD=19.18;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1817,201,0 chrXV 30969 . A G 708.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=8.3656;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=1;MQRankSum=-1.973;QD=9.83;ReadPosRankSum=2.723;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:28,42:71:97:738,0,97 chrXV 30971 . T G 705.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;DP=73;Dels=0.01;FS=0.950;HaplotypeScore=9.9429;MLEAC=1;MLEAF=0.500;MQ=37.45;MQ0=1;MQRankSum=-1.205;QD=9.66;ReadPosRankSum=2.206;SB=-3.580e+02 GT:AD:DP:GQ:PL 0/1:31,41:72:98:735,0,98 chrXV 30992 . A G 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;DP=67;Dels=0.00;FS=20.328;HaplotypeScore=13.0437;MLEAC=1;MLEAF=0.500;MQ=39.45;MQ0=1;MQRankSum=-0.223;QD=1.88;ReadPosRankSum=-1.149;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:52,15:67:99:156,0,459 chrXV 30997 . A T 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;DP=70;Dels=0.00;FS=17.231;HaplotypeScore=10.0711;MLEAC=1;MLEAF=0.500;MQ=38.97;MQ0=1;MQRankSum=0.269;QD=0.90;ReadPosRankSum=-1.849;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,14:70:93:93,0,613 chrXV 31025 . T A 645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.241;DP=60;Dels=0.00;FS=13.632;HaplotypeScore=12.0359;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;MQRankSum=1.505;QD=10.75;ReadPosRankSum=2.699;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:9,50:60:38:678,38,0 chrXV 31031 . A G 632.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910;DP=66;Dels=0.00;FS=13.261;HaplotypeScore=37.5333;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=1.099;QD=9.58;ReadPosRankSum=4.042;SB=-2.645e+02 GT:AD:DP:GQ:PL 1/1:17,49:66:23:665,23,0 chrXV 31036 . A T 473.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;DP=65;Dels=0.00;FS=16.968;HaplotypeScore=6.0444;MLEAC=1;MLEAF=0.500;MQ=38.76;MQ0=1;MQRankSum=0.340;QD=7.28;ReadPosRankSum=4.454;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:20,45:65:99:503,0,117 chrXV 31064 . A T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=75;Dels=0.00;FS=8.663;HaplotypeScore=26.3057;MLEAC=1;MLEAF=0.500;MQ=41.18;MQ0=1;MQRankSum=-0.252;QD=0.37;ReadPosRankSum=5.241;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:62,13:75:58:58,0,684 chrXV 31070 . A G 488.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=37.4695;MLEAC=1;MLEAF=0.500;MQ=44.29;MQ0=1;MQRankSum=2.002;QD=5.95;ReadPosRankSum=3.977;SB=-4.030e+02 GT:AD:DP:GQ:PL 0/1:24,57:82:99:518,0,270 chrXV 31075 . A T 506.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DP=89;Dels=0.00;FS=2.015;HaplotypeScore=27.3670;MLEAC=1;MLEAF=0.500;MQ=44.34;MQ0=1;MQRankSum=1.729;QD=5.69;ReadPosRankSum=3.315;SB=-4.120e+02 GT:AD:DP:GQ:PL 0/1:26,62:89:99:536,0,367 chrXV 31103 . A T 355.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;DP=136;Dels=0.00;FS=9.471;HaplotypeScore=62.2473;MLEAC=1;MLEAF=0.500;MQ=45.66;MQ0=1;MQRankSum=-3.866;QD=2.61;ReadPosRankSum=1.200;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:94,42:136:99:385,0,1184 chrXV 31109 . A G 345.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121;DP=141;Dels=0.00;FS=7.943;HaplotypeScore=97.1804;MLEAC=1;MLEAF=0.500;MQ=45.52;MQ0=1;MQRankSum=-4.151;QD=2.45;ReadPosRankSum=1.231;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:96,45:141:99:375,0,1203 chrXV 31125 . A G 265.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;DP=157;Dels=0.00;FS=26.456;HaplotypeScore=11.5780;MLEAC=1;MLEAF=0.500;MQ=44.73;MQ0=0;MQRankSum=-5.451;QD=1.69;ReadPosRankSum=3.294;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:110,46:157:99:295,0,1423 chrXV 31127 . T G 264.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=163;Dels=0.00;FS=26.566;HaplotypeScore=49.6215;MLEAC=1;MLEAF=0.500;MQ=43.98;MQ0=0;MQRankSum=-4.588;QD=1.62;ReadPosRankSum=3.753;SB=-3.301e+01 GT:AD:DP:GQ:PL 0/1:119,44:163:99:294,0,1397 chrXV 31136 . C T 677.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.786;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=91.5135;MLEAC=1;MLEAF=0.500;MQ=42.04;MQ0=0;MQRankSum=-7.377;QD=3.68;ReadPosRankSum=0.334;SB=-6.270e+02 GT:AD:DP:GQ:PL 0/1:80,104:184:99:707,0,1120 chrXV 31142 . A T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;DP=200;Dels=0.00;FS=53.199;HaplotypeScore=157.2212;MLEAC=1;MLEAF=0.500;MQ=40.58;MQ0=0;MQRankSum=-6.052;QD=0.14;ReadPosRankSum=0.937;SB=-1.390e+02 GT:AD:DP:GQ:PL 0/1:149,51:200:57:57,0,1912 chrXV 31148 . G A 75.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;DP=204;Dels=0.00;FS=59.686;HaplotypeScore=6.3762;MLEAC=1;MLEAF=0.500;MQ=39.88;MQ0=0;MQRankSum=-4.490;QD=0.37;ReadPosRankSum=2.591;SB=-1.550e+02 GT:AD:DP:GQ:PL 0/1:151,53:204:99:105,0,1939 chrXV 31151 . G A 64.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.633;DP=213;Dels=0.00;FS=73.796;HaplotypeScore=9.5309;MLEAC=1;MLEAF=0.500;MQ=39.28;MQ0=0;MQRankSum=-3.280;QD=0.30;ReadPosRankSum=3.556;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:156,57:213:94:94,0,1842 chrXV 31157 . G A 117.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.398;DP=203;Dels=0.00;FS=62.120;HaplotypeScore=9.4095;MLEAC=1;MLEAF=0.500;MQ=38.64;MQ0=0;MQRankSum=-3.567;QD=0.58;ReadPosRankSum=3.437;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:148,55:203:99:147,0,1505 chrXV 31184 . G T 95.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;DP=133;Dels=0.00;FS=39.775;HaplotypeScore=6.5872;MLEAC=1;MLEAF=0.500;MQ=36.08;MQ0=0;MQRankSum=-2.093;QD=0.71;ReadPosRankSum=1.003;SB=-1.310e+02 GT:AD:DP:GQ:PL 0/1:95,38:133:99:125,0,895 chrXV 31186 . A G 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;DP=129;Dels=0.00;FS=43.168;HaplotypeScore=5.7985;MLEAC=1;MLEAF=0.500;MQ=35.98;MQ0=0;MQRankSum=-3.273;QD=0.78;ReadPosRankSum=0.602;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:91,38:129:99:130,0,899 chrXV 31188 . A G 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;DP=129;Dels=0.00;FS=39.460;HaplotypeScore=6.4427;MLEAC=1;MLEAF=0.500;MQ=35.98;MQ0=0;MQRankSum=-1.812;QD=0.78;ReadPosRankSum=0.507;SB=-1.370e+02 GT:AD:DP:GQ:PL 0/1:90,39:129:99:130,0,867 chrXV 31190 . T G 115.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DP=124;Dels=0.00;FS=44.720;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=35.36;MQ0=0;MQRankSum=-1.482;QD=0.93;ReadPosRankSum=-0.144;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:86,38:124:99:145,0,759 chrXV 31199 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=8.10;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:892,99,0 chrXV 31205 . A T 722 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=7.76;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:84:755,84,0 chrXV 31211 . G A 588 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.75;MQ0=0;QD=7.95;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:69:621,69,0 chrXV 31214 . G A 591 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=13.8414;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=7.88;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:69:624,69,0 chrXV 31223 . G T 128.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;DP=84;Dels=0.00;FS=9.507;HaplotypeScore=33.0711;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=-0.751;QD=1.52;ReadPosRankSum=-0.677;SB=-4.100e+02 GT:AD:DP:GQ:PL 0/1:31,53:84:99:158,0,163 chrXV 31227 . G A 104.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;DP=55;Dels=0.00;FS=2.811;HaplotypeScore=4.3659;MLEAC=1;MLEAF=0.500;MQ=30.50;MQ0=0;MQRankSum=0.708;QD=1.89;ReadPosRankSum=1.275;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:41,13:55:67:134,0,67 chrXV 31229 . G T 100.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DP=58;Dels=0.00;FS=2.556;HaplotypeScore=4.3659;MLEAC=1;MLEAF=0.500;MQ=30.42;MQ0=0;MQRankSum=0.336;QD=1.72;ReadPosRankSum=-0.663;SB=-6.501e+01 GT:AD:DP:GQ:PL 0/1:44,14:58:71:130,0,71 chrXV 31244 . A T 324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=33.28;MQ0=0;MQRankSum=-0.143;QD=4.76;ReadPosRankSum=2.932;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:39:357,39,0 chrXV 31248 . G A 344.02 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5162;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;MQRankSum=0.940;QD=4.99;ReadPosRankSum=1.124;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:26:377,26,0 chrXV 31310 . A T 1878 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.0472;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=17.89;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1911,204,0 chrXV 31369 . A T 2098 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.6028;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=21.41;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2131,234,0 chrXV 31394 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=19.11;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1562,174,0 chrXV 31429 . T C 664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=50;Dels=0.00;FS=3.590;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;MQRankSum=1.299;QD=13.28;ReadPosRankSum=1.588;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,47:50:81:697,81,0 chrXV 31440 . A G 404 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=31.5633;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=10.63;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:437,54,0 chrXV 31466 . G A 790 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=15.19;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:823,90,0 chrXV 31493 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=16.53;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1058,117,0 chrXV 31639 . T G 2219 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=21.97;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2252,252,0 chrXV 31776 . A G 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=6.084;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-0.628;QD=15.77;ReadPosRankSum=1.682;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1121,123,0 chrXV 31789 . G A 826 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=13.11;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:93:859,93,0 chrXV 31790 . T A 830 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=42.06;MQ0=0;QD=13.17;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:93:863,93,0 chrXV 31801 . C T 787 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=13.12;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:90:820,90,0 chrXV 31814 . A C 627 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=11.20;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:75:660,75,0 chrXV 31946 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.03;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1435,159,0 chrXV 31959 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=20.85;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1576,174,0 chrXV 31977 . A G 1503 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.87;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1536,171,0 chrXV 32012 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=86.9857;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=16.72;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1187,132,0 chrXV 32177 . G C 1177 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.2291;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.68;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1210,135,0 chrXV 32330 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=18.37;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1209,129,0 chrXV 32374 . A G 548 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=0;QD=9.79;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:66:581,66,0 chrXV 32379 . C T 544 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=0;QD=9.89;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:63:577,63,0 chrXV 32386 . C A 550 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=44.6538;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=9.82;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:63:583,63,0 chrXV 32395 . A G 517 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=9.57;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:60:550,60,0 chrXV 32791 . A G 843 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=5.408;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=-1.680;QD=12.77;ReadPosRankSum=1.680;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:96:876,96,0 chrXV 32803 . T C 870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=-0.182;QD=11.45;ReadPosRankSum=1.641;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:903,102,0 chrXV 32809 . C T 979 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=70.0917;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=12.24;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1012,111,0 chrXV 32838 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=14.80;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1232,132,0 chrXV 32865 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.74;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1532,162,0 chrXV 33217 . A C 2065 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.07;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2098,234,0 chrXV 33308 . C A 1818 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.44;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1851,195,0 chrXV 33511 . C G 1417 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.84;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1450,159,0 chrXV 33546 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.74;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1395,156,0 chrXV 33565 . G A 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=0.024;QD=16.39;ReadPosRankSum=0.122;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1197,107,0 chrXV 33571 . G T 1158 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=16.78;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1191,126,0 chrXV 33602 . A G 1153 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.71;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1186,132,0 chrXV 34108 . G C 1803 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.04;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1836,204,0 chrXV 34711 . T C 2425 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2458,270,0 chrXV 35297 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.56;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1973,222,0 chrXV 35486 . A T 2138 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.43;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2171,234,0 chrXV 35596 . A T 1500 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.7132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.30;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1533,168,0 chrXV 35666 . A G 1226 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.30;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1259,141,0 chrXV 35730 . G A 837 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:870,93,0 chrXV 35788 . T A 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.590;QD=22.12;ReadPosRankSum=1.590;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1670,177,0 chrXV 35855 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.78;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1400,156,0 chrXV 35896 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.83;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1272,135,0 chrXV 36047 . A G 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=62;Dels=0.00;FS=4.357;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.462;QD=21.73;ReadPosRankSum=1.559;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:1,59:62:99:1380,153,0 chrXV 36090 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.97;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1249,141,0 chrXV 36091 . C G 1232 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.24;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1265,141,0 chrXV 36348 . G A 1602 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.22;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1635,171,0 chrXV 36403 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.32;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1640,183,0 chrXV 36550 . C G 1756 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.29;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1789,198,0 chrXV 36551 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.66;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1843,192,0 chrXV 36606 . T G 1903 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.03;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1936,216,0 chrXV 36648 . G C 1697 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1730,192,0 chrXV 36760 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.76;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1382,150,0 chrXV 37059 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1460,162,0 chrXV 37107 . C A 1668 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1701,189,0 chrXV 37205 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.3741;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.669;QD=21.25;ReadPosRankSum=1.669;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,109:112:99:2413,267,0 chrXV 37274 . A C 2909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=4.136;HaplotypeScore=11.3637;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.150;QD=22.55;ReadPosRankSum=1.705;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:1,127:129:99:2942,321,0 chrXV 37742 . G A 2510 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=15.3048;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.73;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2543,276,0 chrXV 37812 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.87;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1901,213,0 chrXV 37859 . G T 1735 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7202;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.66;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1768,195,0 chrXV 37887 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.16;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1868,204,0 chrXV 38001 . C G 1670 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.20;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1703,189,0 chrXV 38177 . A C 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=92;Dels=0.00;FS=3.632;HaplotypeScore=9.8550;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.577;QD=19.28;ReadPosRankSum=1.694;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:1,89:92:99:1807,204,0 chrXV 38741 . A C 747 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.19;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:780,87,0 chrXV 38783 . G A 720 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.95;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:81:753,81,0 chrXV 38791 . A C 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.489;QD=18.67;ReadPosRankSum=1.644;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:84:761,84,0 chrXV 38812 . A G 755 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.98;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:788,87,0 chrXV 39068 . T C 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-0.880;QD=19.72;ReadPosRankSum=1.675;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1236,138,0 chrXV 39070 . G C 1181 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=18.75;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1214,135,0 chrXV 39168 . G C 1699 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=22.96;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1732,192,0 chrXV 39321 . A G 1964 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.89;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1997,222,0 chrXV 39380 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=14.43;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1101,120,0 chrXV 39382 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=15.39;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1126,120,0 chrXV 39402 . G C 943 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=12.25;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:976,108,0 chrXV 39405 . T A 887 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=12.15;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:920,99,0 chrXV 39407 . T C 859 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=-0.234;QD=11.61;ReadPosRankSum=1.685;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:892,102,0 chrXV 39416 . A G 665 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.01;FS=3.424;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=0.382;QD=8.53;ReadPosRankSum=1.687;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:84:698,84,0 chrXV 39417 . G A 706 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=4.5231;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=9.17;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:87:739,87,0 chrXV 39418 . G C 742 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;MQRankSum=1.192;QD=9.64;ReadPosRankSum=-0.382;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:90:775,90,0 chrXV 39421 . A G 766 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.279;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=1.526;QD=9.12;ReadPosRankSum=-0.701;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:90:799,90,0 chrXV 39433 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=0;QD=10.51;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:968,108,0 chrXV 39472 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=15.44;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1423,150,0 chrXV 39491 . A T 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=1.742;QD=16.44;ReadPosRankSum=2.397;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1578,165,0 chrXV 39574 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=22.28;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2016,225,0 chrXV 39607 . A C 1752 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.37;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1785,195,0 chrXV 39657 . C T 1832 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.96;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1865,201,0 chrXV 39746 . C A 2290 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.20;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2323,261,0 chrXV 39873 . T A 1106 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.51;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1139,123,0 chrXV 39882 . A G 1238 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.96;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1271,141,0 chrXV 39893 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=13.79;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1164,129,0 chrXV 39962 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.35;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1577,171,0 chrXV 40227 . G A 1736 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.11;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1769,186,0 chrXV 40513 . G A 1409 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.85;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1442,162,0 chrXV 40570 . A G 935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.710;QD=15.33;ReadPosRankSum=1.562;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:968,108,0 chrXV 40593 . A G 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.962;QD=16.15;ReadPosRankSum=1.636;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1212,132,0 chrXV 40697 . A G 1953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.534;DP=117;Dels=0.00;FS=4.917;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.849;QD=16.69;ReadPosRankSum=3.725;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:5,111:117:99:1986,225,0 chrXV 40834 . A G 887 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.63;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:920,105,0 chrXV 41050 . A G 1131 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.4866;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.56;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1164,129,0 chrXV 41137 . T G 1244 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.82;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1277,147,0 chrXV 41221 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0907;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.69;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1688,186,0 chrXV 41495 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1830,195,0 chrXV 41838 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.36;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1528,159,0 chrXV 41989 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.715;QD=23.45;ReadPosRankSum=1.694;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2190,249,0 chrXV 42092 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.87;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1703,180,0 chrXV 42175 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.91;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1111,123,0 chrXV 42247 . G C 1231 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.85;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1264,141,0 chrXV 42267 . T C 988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;MQRankSum=-0.375;QD=13.35;ReadPosRankSum=1.639;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1021,114,0 chrXV 42278 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=11.63;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:96:859,96,0 chrXV 42290 . A G 724 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=10.20;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:84:757,84,0 chrXV 42291 . T C 762 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=10.73;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:87:795,87,0 chrXV 42415 . C T 2090 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.22;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2123,234,0 chrXV 42536 . G A 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4866;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.866;QD=22.18;ReadPosRankSum=1.670;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1275,115,0 chrXV 42617 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.8391;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=19.95;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1689,189,0 chrXV 42967 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=20.32;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1293,144,0 chrXV 43092 . A G 347 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=6.09;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:42:380,42,0 chrXV 43143 . A G 785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;MQRankSum=-1.667;QD=14.81;ReadPosRankSum=1.667;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:93:818,93,0 chrXV 43170 . T C 1001 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=16.68;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1034,114,0 chrXV 43176 . A C 993 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=16.83;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1026,111,0 chrXV 43187 . A G 1006 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=15.97;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1039,114,0 chrXV 43188 . A G 981 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=15.57;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1014,114,0 chrXV 43205 . G T 1019 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;QD=16.17;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1052,111,0 chrXV 43223 . G A 894 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=16.87;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:927,102,0 chrXV 43303 . T C 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=18.77;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1084,129,0 chrXV 43312 . G A 971 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=16.46;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1004,123,0 chrXV 43313 . A G 956 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=16.48;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:989,123,0 chrXV 43318 . A G 990 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=17.37;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1023,123,0 chrXV 43337 . C T 446 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=10.88;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:57:479,57,0 chrXV 43346 . T C 166.03 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=6.15;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:24:199,24,0 chrXV 43351 . C T 73.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=3.20;SB=-1.565e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:12:106,12,0 chrXV 43360 . A G 121.13 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=4.18;SB=-1.621e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:18:154,18,0 chrXV 43366 . A G 147.06 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;QD=5.07;SB=-1.661e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:21:180,21,0 chrXV 43369 . G C 160.06 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=5.72;SB=-1.931e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:21:193,21,0 chrXV 43374 . A G 174.03 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.22;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:207,24,0 chrXV 43376 . T C 173.03 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=6.18;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:206,24,0 chrXV 43415 . A G 255 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.56;MQ0=0;QD=9.81;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:33:288,33,0 chrXV 43444 . T C 190.03 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=6.79;SB=-1.550e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:223,24,0 chrXV 43479 . A T 322 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=11.50;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:39:355,39,0 chrXV 43511 . A G 723 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=15.38;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:756,84,0 chrXV 43599 . C T 1105 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=0;QD=17.27;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1138,132,0 chrXV 43623 . T C 905 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=14.14;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:938,111,0 chrXV 43625 . T C 911 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=14.46;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:944,111,0 chrXV 43628 . C G 847 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=13.44;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:880,105,0 chrXV 43648 . G A 411 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=7.75;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:54:444,54,0 chrXV 43650 . A T 432 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=8.15;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:54:465,54,0 chrXV 43663 . A G 375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.441;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=0;MQRankSum=0.309;QD=6.70;ReadPosRankSum=1.670;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:51:408,51,0 chrXV 43666 . C A 393 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=7.02;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:51:426,51,0 chrXV 43688 . G T 720 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=11.08;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:84:753,84,0 chrXV 43705 . C T 827 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=12.92;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:860,93,0 chrXV 43753 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=19.97;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1191,132,0 chrXV 43786 . C T 884 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=19.64;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:917,102,0 chrXV 43834 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=19.35;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:962,105,0 chrXV 43840 . A C 982 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=19.25;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1015,114,0 chrXV 43853 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=18.34;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1060,114,0 chrXV 43915 . T G 1390 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=20.14;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1423,159,0 chrXV 44092 . T C 1015 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=18.80;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1048,117,0 chrXV 44113 . G A 1158 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=11.1059;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=17.82;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1191,132,0 chrXV 44149 . T A 1524 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=21.46;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1557,174,0 chrXV 44176 . A G 1440 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=21.82;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1473,165,0 chrXV 44181 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=21.94;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1525,171,0 chrXV 44249 . T G 903 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.460;DP=50;Dels=0.00;FS=11.274;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.517;QD=18.06;ReadPosRankSum=3.622;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:5,45:50:99:936,108,0 chrXV 44488 . A G 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;MQRankSum=-1.291;QD=20.04;ReadPosRankSum=1.669;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1135,129,0 chrXV 44491 . G A 1080 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=19.29;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1113,123,0 chrXV 44518 . T C 923 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.23;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:956,105,0 chrXV 44548 . T C 651 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.27;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:684,75,0 chrXV 44554 . A G 590 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.13;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:623,69,0 chrXV 44801 . C T 2298 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.82;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2331,246,0 chrXV 45210 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.214;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.192;QD=22.27;ReadPosRankSum=1.700;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2460,279,0 chrXV 46192 . C T 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8105;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.732;QD=20.18;ReadPosRankSum=1.599;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2132,234,0 chrXV 46201 . T A 1949 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.49;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1982,213,0 chrXV 46732 . A G 2407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=3.365;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.815;QD=23.14;ReadPosRankSum=1.698;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:1,102:104:99:2440,267,0 chrXV 46903 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.93;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2272,252,0 chrXV 47652 . A C 1519 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.672;DP=83;Dels=0.00;FS=2.616;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.134;QD=18.30;ReadPosRankSum=2.818;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1552,174,0 chrXV 47740 . G A 2254 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0013;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.48;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2287,246,0 chrXV 47785 . C T 2599 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.84;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2632,285,0 chrXV 48217 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.81;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2072,222,0 chrXV 48311 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.02;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1817,201,0 chrXV 48326 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=100;Dels=0.00;FS=2.765;HaplotypeScore=3.5429;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.490;QD=18.91;ReadPosRankSum=2.351;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1924,213,0 chrXV 48997 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.22;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:68:99:1408,150,0 chrXV 50002 . C T 1228 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.33;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1261,135,0 chrXV 50010 . A T 1128 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=17.35;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1161,126,0 chrXV 50012 . C T 1158 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.03;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1191,126,0 chrXV 52050 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=10.1048;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.15;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1262,135,0 chrXV 53069 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.53;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1718,183,0 chrXV 53096 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.91;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1339,144,0 chrXV 53357 . G C 1483 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1516,168,0 chrXV 53889 . G A 3169 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.57;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:3202,348,0 chrXV 54961 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.49;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1903,207,0 chrXV 55283 . T A 1297 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=17.53;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1330,141,0 chrXV 55310 . C T 873 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=13.43;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:96:906,96,0 chrXV 55311 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=13.17;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:876,93,0 chrXV 55328 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=9.77;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:81:746,81,0 chrXV 55330 . T C 787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=2.967;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;MQRankSum=-1.587;QD=9.84;ReadPosRankSum=2.357;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:90:820,90,0 chrXV 55423 . C G 2021 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.50;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2054,228,0 chrXV 55506 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.6155;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.34;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1887,210,0 chrXV 56117 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.86;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1493,156,0 chrXV 56429 . C A 1782 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1815,192,0 chrXV 56492 . T A 1253 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=64;Dels=0.00;FS=2.739;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.521;QD=19.58;ReadPosRankSum=2.257;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1286,138,0 chrXV 57520 . A G 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.432;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.347;QD=23.46;ReadPosRankSum=1.700;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:1,107:109:99:2590,288,0 chrXV 57629 . T C 1966 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.135;DP=88;Dels=0.00;FS=5.339;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.371;QD=22.34;ReadPosRankSum=3.355;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:4,84:88:99:1999,222,0 chrXV 57711 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.16;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1949,207,0 chrXV 57712 . T C 1838 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.20;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1871,207,0 chrXV 57777 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.07;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1730,192,0 chrXV 58231 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.61;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1739,189,0 chrXV 58445 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1930,216,0 chrXV 59664 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0538;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.31;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2130,228,0 chrXV 60240 . C T 481 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=15.52;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:54:514,54,0 chrXV 61712 . T C 3111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=7.682;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.079;QD=21.16;ReadPosRankSum=2.416;SB=-1.522e+03 GT:AD:DP:GQ:PL 1/1:2,145:147:99:3144,348,0 chrXV 61766 . T C 2643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=133;Dels=0.00;FS=6.188;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.736;QD=19.87;ReadPosRankSum=2.357;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2676,300,0 chrXV 62039 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.1084;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.78;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3060,330,0 chrXV 62062 . G A 3044 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.06;SB=-1.813e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:3077,321,0 chrXV 62108 . A G 2308 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.92;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2341,258,0 chrXV 62432 . C T 2416 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.17;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2449,261,0 chrXV 62744 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.49;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2102,222,0 chrXV 63109 . T C 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=19.9209;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=-0.338;QD=20.62;ReadPosRankSum=1.479;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:4,81:85:99:1786,201,0 chrXV 63281 . A G 992 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1025,111,0 chrXV 63524 . C T 2159 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2192,228,0 chrXV 64043 . T G 1177 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8961;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.63;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1210,138,0 chrXV 64228 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1335,150,0 chrXV 64300 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.77;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1644,174,0 chrXV 64397 . A G 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.280;QD=21.97;ReadPosRankSum=1.682;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1549,171,0 chrXV 65216 . T C 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.008;QD=18.21;ReadPosRankSum=1.681;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1253,138,0 chrXV 65318 . G C 1272 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.57;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1305,150,0 chrXV 65555 . G A 2303 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.26;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2336,252,0 chrXV 65595 . A T 2575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=5.682;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.453;QD=22.99;ReadPosRankSum=1.670;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2608,279,0 chrXV 65800 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2102,225,0 chrXV 66022 . A T 1682 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.56;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1715,183,0 chrXV 66025 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.28;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1730,186,0 chrXV 67090 . A C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=-0.820;QD=18.07;ReadPosRankSum=1.696;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1750,198,0 chrXV 67130 . C G 1543 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=17.53;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1576,171,0 chrXV 67143 . T G 1432 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=17.25;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1465,165,0 chrXV 67145 . G A 1430 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;QD=17.44;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1463,156,0 chrXV 67147 . A G 1353 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=16.70;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1386,150,0 chrXV 67149 . C T 1315 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.65;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1348,144,0 chrXV 67175 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8366;MLEAC=2;MLEAF=1.00;MQ=41.51;MQ0=0;QD=15.25;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1512,171,0 chrXV 67209 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=15.98;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1407,150,0 chrXV 67210 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=15.87;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1398,147,0 chrXV 67223 . A G 1496 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=14.96;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1529,171,0 chrXV 67526 . T C 1356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.239;QD=19.94;ReadPosRankSum=0.976;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1389,159,0 chrXV 67774 . G A 918 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.96;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:951,102,0 chrXV 67780 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.04;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:890,102,0 chrXV 67831 . A G 951 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.29;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:984,111,0 chrXV 68535 . A G 1333 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.16;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1366,153,0 chrXV 68590 . T C 1226 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=3.163;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.538;QD=21.14;ReadPosRankSum=1.673;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1259,141,0 chrXV 68779 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.06;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1209,129,0 chrXV 68903 . G T 1466 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1499,159,0 chrXV 69357 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.96;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1144,126,0 chrXV 69435 . T C 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.144;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.315;QD=17.31;ReadPosRankSum=1.575;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1193,135,0 chrXV 69442 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.77;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1058,120,0 chrXV 69484 . C G 1170 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=16.25;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1203,138,0 chrXV 69894 . T C 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.122;QD=18.51;ReadPosRankSum=2.311;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1347,153,0 chrXV 70127 . C A 1830 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.28;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1863,201,0 chrXV 70164 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.60;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1934,213,0 chrXV 70221 . T A 2090 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.02;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2123,222,0 chrXV 70272 . C A 2068 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.24;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2101,222,0 chrXV 70322 . A G 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=5.586;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.140;QD=23.14;ReadPosRankSum=1.687;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1792,204,0 chrXV 70447 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.55;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1521,165,0 chrXV 71321 . T G 1695 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.30;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1728,195,0 chrXV 71575 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.86;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2022,219,0 chrXV 71578 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.68;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2006,216,0 chrXV 71596 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.00;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1902,207,0 chrXV 71623 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.81;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1688,180,0 chrXV 71725 . G A 1886 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1919,204,0 chrXV 71821 . C T 2017 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.45;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2050,222,0 chrXV 72741 . A C 1200 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.67;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1233,138,0 chrXV 73175 . A G 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=11.541;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.263;QD=18.05;ReadPosRankSum=2.863;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1495,165,0 chrXV 73180 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.38;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1510,159,0 chrXV 73327 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3126;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.76;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1515,174,0 chrXV 73511 . T A 1584 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.12;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1617,171,0 chrXV 74126 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.45;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1628,174,0 chrXV 74338 . G T 3344.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.00;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,149:152:99:3344,363,0 chrXV 74588 . T G 1312 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=16.40;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1345,150,0 chrXV 74698 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.7761;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.92;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2506,264,0 chrXV 74711 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.30;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2403,264,0 chrXV 74821 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=128;Dels=0.00;FS=3.844;HaplotypeScore=9.3277;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.742;QD=16.13;ReadPosRankSum=1.677;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:1,125:128:99:2098,240,0 chrXV 74966 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=2.835;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.707;QD=22.34;ReadPosRankSum=2.382;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1664,183,0 chrXV 75161 . T C 2138 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0980;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.17;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2171,240,0 chrXV 75243 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.85;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2014,225,0 chrXV 75413 . A C 1564 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.80;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1597,177,0 chrXV 75605 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.82;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1648,180,0 chrXV 75707 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.86;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2570,282,0 chrXV 75794 . T C 1888 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.21;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1921,216,0 chrXV 75953 . A G 2796 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.37;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2829,315,0 chrXV 76001 . C T 3803.01 PASS AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.92;SB=-1.548e+03 GT:AD:DP:GQ:PL 1/1:0,159:159:99:3803,405,0 chrXV 76115 . T A 2207 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.0077;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.25;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2240,243,0 chrXV 76139 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.86;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2223,252,0 chrXV 76208 . A C 1854 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1267;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.31;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1887,210,0 chrXV 76379 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4167;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=14.34;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1352,144,0 chrXV 76391 . T C 890 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=5.229;HaplotypeScore=5.1212;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=0.462;QD=9.57;ReadPosRankSum=1.655;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,89:93:99:923,102,0 chrXV 76416 . A G 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=-0.571;QD=12.96;ReadPosRankSum=2.374;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1290,141,0 chrXV 76655 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.86;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1319,150,0 chrXV 76693 . A C 579 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=7.024;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;MQRankSum=-1.868;QD=11.35;ReadPosRankSum=2.256;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:69:612,69,0 chrXV 76700 . G A 498 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=11.58;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:531,60,0 chrXV 76703 . G A 400 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=11.11;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:45:433,45,0 chrXV 76704 . G C 372 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=10.63;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:405,45,0 chrXV 76707 . A G 383 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=9.34;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:416,45,0 chrXV 76718 . C T 627 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=12.54;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:72:660,72,0 chrXV 76776 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.22;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1032,114,0 chrXV 77289 . T C 1727 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.56;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1760,201,0 chrXV 77324 . A C 1933 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.93;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1966,219,0 chrXV 77377 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=15.02;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1670,189,0 chrXV 77399 . A G 904 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=10.89;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:937,105,0 chrXV 77404 . G A 1005 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=11.55;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1038,111,0 chrXV 77432 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7751;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=14.22;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1156,123,0 chrXV 77697 . C T 2469 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.47;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2502,264,0 chrXV 78123 . G C 2018 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.38;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2051,231,0 chrXV 78272 . T G 1057 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.14;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:1090,120,0 chrXV 78367 . C T 1050 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1083,120,0 chrXV 78663 . T G 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.199;QD=21.79;ReadPosRankSum=1.599;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1166,129,0 chrXV 78910 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.70;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1248,135,0 chrXV 79026 . G A 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=88;Dels=0.00;FS=4.006;HaplotypeScore=8.1045;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-0.104;QD=21.97;ReadPosRankSum=0.063;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,82:88:99:1966,207,0 chrXV 79159 . G A 2857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.135;HaplotypeScore=5.3055;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.246;QD=24.84;ReadPosRankSum=1.702;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2890,303,0 chrXV 79199 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.56;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2469,267,0 chrXV 79278 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=14.12;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1403,147,0 chrXV 79286 . A G 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;MQRankSum=-0.577;QD=12.24;ReadPosRankSum=0.838;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1184,132,0 chrXV 79297 . C G 883 SnpCluster AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=10.64;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:916,102,0 chrXV 79304 . A T 478 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;MQRankSum=0.560;QD=7.35;ReadPosRankSum=1.626;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:57:511,57,0 chrXV 79305 . T A 494 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=7.72;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:60:527,60,0 chrXV 79585 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.11;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1829,198,0 chrXV 79627 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=17.91;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1645,174,0 chrXV 79906 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.40;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1450,156,0 chrXV 79930 . C T 894 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.24;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:927,102,0 chrXV 79941 . T A 842 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=3.892;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=0.177;QD=16.84;ReadPosRankSum=1.520;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:96:875,96,0 chrXV 79976 . T C 408 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=13.16;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:51:441,51,0 chrXV 79987 . T C 538 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.94;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:63:571,63,0 chrXV 80004 . C G 588 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=14.00;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:69:621,69,0 chrXV 80008 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=14.45;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:640,72,0 chrXV 80409 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.60;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1696,180,0 chrXV 80423 . G C 1285 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.90;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1318,147,0 chrXV 80449 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.38;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1254,135,0 chrXV 80586 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.20;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1750,195,0 chrXV 80641 . T C 1559 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.51;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1592,180,0 chrXV 80664 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.37;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2069,216,0 chrXV 80920 . T C 1116 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1149,126,0 chrXV 81355 . T C 936 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:969,108,0 chrXV 81364 . G T 674 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:78:707,78,0 chrXV 81384 . A G 253 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=9.37;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,27:27:33:286,33,0 chrXV 81404 . T C 198.03 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.734;QD=8.25;ReadPosRankSum=1.589;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:24:231,24,0 chrXV 81409 . T G 206.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;MQRankSum=-1.734;QD=8.58;ReadPosRankSum=1.589;SB=-2.381e-02 GT:AD:DP:GQ:PL 1/1:1,23:24:27:239,27,0 chrXV 81416 . G A 274 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=10.96;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,25:25:33:307,33,0 chrXV 81436 . C T 409 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=13.63;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:48:442,48,0 chrXV 81481 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.76;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:737,81,0 chrXV 81486 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.22;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:926,99,0 chrXV 81543 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.53;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1386,147,0 chrXV 81669 . T A 3853.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.5695;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.137;QD=23.49;ReadPosRankSum=1.477;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3853,406,0 chrXV 81796 . T A 3065 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=25.33;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:3098,330,0 chrXV 81934 . T C 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=119;Dels=0.00;FS=6.998;HaplotypeScore=6.5763;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.031;QD=19.02;ReadPosRankSum=1.928;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,117:119:99:2296,240,0 chrXV 81988 . T C 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.735;DP=159;Dels=0.00;FS=22.644;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.132;QD=16.75;ReadPosRankSum=3.675;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:5,153:159:99:2696,300,0 chrXV 82066 . A G 2130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.9797;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.674;QD=17.32;ReadPosRankSum=0.520;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,119:123:99:2163,243,0 chrXV 82183 . T C 2195 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.15;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2228,246,0 chrXV 82213 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=3.027;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.464;QD=19.30;ReadPosRankSum=2.385;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,112:115:99:2252,246,0 chrXV 82279 . C T 2325 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6305;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.79;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2358,249,0 chrXV 82378 . G A 1415 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.0748;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.05;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1448,156,0 chrXV 82642 . A G 1605 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.774;QD=17.07;ReadPosRankSum=1.695;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1638,186,0 chrXV 82666 . T C 1169 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=13.44;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1202,138,0 chrXV 82672 . A G 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.442;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;MQRankSum=-0.603;QD=12.65;ReadPosRankSum=1.693;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1159,129,0 chrXV 82681 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=11.33;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:928,102,0 chrXV 82759 . A G 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.828;QD=20.00;ReadPosRankSum=1.682;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1413,156,0 chrXV 82762 . C G 1331 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.87;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1364,153,0 chrXV 82988 . C T 1913 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=21.02;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1946,210,0 chrXV 82991 . C T 1965 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=20.90;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1998,216,0 chrXV 83002 . A T 2304 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=22.37;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2337,249,0 chrXV 83044 . C G 2073 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=19.19;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2106,234,0 chrXV 83069 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=-1.437;QD=19.95;ReadPosRankSum=1.695;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1928,216,0 chrXV 83321 . G A 1000 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.18;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1033,114,0 chrXV 83453 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0515;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.77;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1253,132,0 chrXV 83506 . G A 80.51 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=50.3159;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=0.96;SB=-6.855e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:12:113,12,0 chrXV 83518 . G A 407 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=5.99;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:48:440,48,0 chrXV 83622 . T C 427 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=17.08;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:51:460,51,0 chrXV 83636 . T A 502 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=13.94;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:57:535,57,0 chrXV 83646 . T A 498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;MQRankSum=-0.796;QD=12.77;ReadPosRankSum=2.197;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:2,37:39:57:531,57,0 chrXV 83647 . T C 477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;DP=41;Dels=0.00;FS=2.652;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=-1.126;QD=11.63;ReadPosRankSum=2.829;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:3,38:41:57:510,57,0 chrXV 83714 . A C 638 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=13.87;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:75:671,75,0 chrXV 83725 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=15.21;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:626,69,0 chrXV 83736 . C T 772 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.7297;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=14.85;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:87:805,87,0 chrXV 83798 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.27;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1429,153,0 chrXV 83863 . T C 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.289;QD=21.85;ReadPosRankSum=1.684;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1606,177,0 chrXV 84190 . A G 2441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.9860;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.058;QD=20.01;ReadPosRankSum=1.646;SB=-1.502e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2474,270,0 chrXV 84226 . G A 2445 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9649;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.90;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2478,267,0 chrXV 84352 . G C 1820 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.41;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1853,207,0 chrXV 84370 . A G 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.536;QD=19.06;ReadPosRankSum=1.691;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1672,186,0 chrXV 84388 . C T 1571 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.14;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1604,171,0 chrXV 84463 . C T 1088 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1121,123,0 chrXV 84628 . C T 2819 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.5765;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.55;SB=-1.488e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2852,303,0 chrXV 85000 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.10;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,80:84:99:1721,180,0 chrXV 85011 . G C 1676 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.95;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1709,189,0 chrXV 85161 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.81;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1858,207,0 chrXV 85524 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1666,183,0 chrXV 85606 . T C 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.302;QD=21.65;ReadPosRankSum=1.677;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,62:65:99:1440,159,0 chrXV 85645 . A G 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=4.956;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.540;QD=21.47;ReadPosRankSum=1.684;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1600,180,0 chrXV 85809 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.247;QD=21.38;ReadPosRankSum=1.547;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2428,273,0 chrXV 85960 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.70;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1791,189,0 chrXV 86056 . C A 966 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=14.86;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:999,111,0 chrXV 86935 . A C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=90;Dels=0.00;FS=5.514;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.993;QD=20.88;ReadPosRankSum=0.214;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1912,191,0 chrXV 86963 . G T 2079 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.90;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:2112,222,0 chrXV 87017 . A G 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.866;QD=19.11;ReadPosRankSum=1.678;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1256,141,0 chrXV 87042 . T C 844 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.23;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:877,96,0 chrXV 87062 . G A 792 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.22;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:825,90,0 chrXV 87079 . C A 1019 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.53;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1052,111,0 chrXV 87126 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.67;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1211,132,0 chrXV 87163 . T A 1209 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.18;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1242,132,0 chrXV 87202 . G A 695 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:728,78,0 chrXV 87288 . T G 592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=4.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.313;QD=17.41;ReadPosRankSum=1.628;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:72:625,72,0 chrXV 87344 . T C 782 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.34;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:815,90,0 chrXV 87454 . C T 612 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=16.11;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:72:645,72,0 chrXV 88581 . T C 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=2.781;HaplotypeScore=11.3393;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.187;QD=21.75;ReadPosRankSum=2.400;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2186,243,0 chrXV 88638 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.57;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1823,195,0 chrXV 88659 . G T 1619 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.49;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1652,177,0 chrXV 88841 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.79;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2008,225,0 chrXV 89223 . T A 795 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=11.87;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:90:828,90,0 chrXV 89229 . A C 740 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=11.75;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:84:773,84,0 chrXV 90174 . A C 995 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.31;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1028,114,0 chrXV 90436 . T C 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.024;DP=73;Dels=0.00;FS=15.974;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.010;QD=17.64;ReadPosRankSum=4.024;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:6,66:73:99:1321,144,0 chrXV 90505 . T A 2566 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.75;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2599,282,0 chrXV 90550 . C T 3209.99 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.50;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,129:131:99:3243,339,0 chrXV 90886 . C T 2736 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.54;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2769,306,0 chrXV 90949 . A G 2162 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.48;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,108:111:99:2195,240,0 chrXV 90982 . A G 2072 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.93;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2105,237,0 chrXV 91199 . G C 1692 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.81;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1725,189,0 chrXV 91489 . A G 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=84;Dels=0.00;FS=2.986;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.846;QD=19.40;ReadPosRankSum=2.391;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1663,186,0 chrXV 91614 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.43;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1132,126,0 chrXV 91686 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.98;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1016,108,0 chrXV 91737 . C T 591 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.38;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:624,66,0 chrXV 91777 . C T 459 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=15.30;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:30:51:492,51,0 chrXV 92619 . C T 820 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=12.42;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:853,96,0 chrXV 92649 . A C 670 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=10.98;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:78:703,78,0 chrXV 92652 . T C 713 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=11.14;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:81:746,81,0 chrXV 92656 . G C 749 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=10.86;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:782,87,0 chrXV 92669 . T C 791 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.63;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:824,93,0 chrXV 92690 . G A 700 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=11.48;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:733,81,0 chrXV 92712 . A C 778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=1.672;QD=13.65;ReadPosRankSum=1.672;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:90:811,90,0 chrXV 92889 . G A 2026 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.46;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2059,219,0 chrXV 93068 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.62;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1132,120,0 chrXV 93082 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-0.543;QD=17.51;ReadPosRankSum=1.681;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1206,135,0 chrXV 93135 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=16.31;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:995,108,0 chrXV 93148 . A C 827 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=14.26;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:860,99,0 chrXV 93175 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.40;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1045,114,0 chrXV 94140 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.54;MQ0=0;QD=21.95;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1679,189,0 chrXV 94445 . A T 1309 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.18;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1342,150,0 chrXV 94574 . C A 1082 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.67;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1115,117,0 chrXV 94646 . T A 693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.945;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;MQRankSum=-1.173;QD=11.18;ReadPosRankSum=1.621;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:78:726,78,0 chrXV 94686 . T A 934 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;MQRankSum=-0.176;QD=13.54;ReadPosRankSum=1.682;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:967,105,0 chrXV 94688 . A T 906 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=12.76;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:939,102,0 chrXV 94694 . G A 895 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=11.78;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:928,102,0 chrXV 94697 . G A 934 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=12.62;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:967,102,0 chrXV 94761 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=18.48;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1234,135,0 chrXV 94782 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.93;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1268,141,0 chrXV 94810 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=266.7831;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=19.31;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1288,141,0 chrXV 95075 . A G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.742;QD=19.86;ReadPosRankSum=1.677;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1304,144,0 chrXV 95393 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.70;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1335,150,0 chrXV 95966 . T A 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=81;Dels=0.00;FS=3.063;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.834;QD=20.46;ReadPosRankSum=2.388;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1690,180,0 chrXV 96035 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1861,207,0 chrXV 96219 . G T 1278 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.66;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1311,141,0 chrXV 96853 . T C 1540 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=75;Dels=0.00;FS=3.436;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.640;QD=20.53;ReadPosRankSum=1.640;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1573,177,0 chrXV 96983 . T A 1571 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.89;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1604,171,0 chrXV 97189 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.28;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1286,144,0 chrXV 97199 . G A 1289 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.41;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1322,147,0 chrXV 97610 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.89;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1955,207,0 chrXV 97633 . C G 1657 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.96;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1690,189,0 chrXV 97809 . C A 979 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1012,108,0 chrXV 97910 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.29;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1119,126,0 chrXV 99704 . A G 1641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.249;QD=19.08;ReadPosRankSum=1.652;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1674,189,0 chrXV 100186 . G T 2646 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.00;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2679,282,0 chrXV 100319 . T C 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=88;Dels=0.00;FS=2.709;HaplotypeScore=14.4337;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.184;QD=20.99;ReadPosRankSum=2.365;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1880,207,0 chrXV 100603 . A G 1905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=87;Dels=0.00;FS=6.173;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.058;QD=21.90;ReadPosRankSum=2.919;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:3,84:87:99:1938,216,0 chrXV 100717 . T C 1893 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=8.335;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.012;QD=18.74;ReadPosRankSum=2.401;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1926,213,0 chrXV 101400 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1847,204,0 chrXV 101577 . C A 1456 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1489,156,0 chrXV 102671 . A T 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.590;QD=21.00;ReadPosRankSum=0.356;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1566,165,0 chrXV 103578 . C T 1919 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.81;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1952,207,0 chrXV 103717 . A G 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.400;QD=21.21;ReadPosRankSum=1.643;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1687,192,0 chrXV 103869 . A G 2114 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.30;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2147,234,0 chrXV 103968 . A C 2392 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.36;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2425,267,0 chrXV 104098 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=16.67;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1300,144,0 chrXV 104119 . A G 1379 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.14;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1412,156,0 chrXV 104197 . A T 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.854;QD=18.35;ReadPosRankSum=1.683;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1409,153,0 chrXV 104229 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.07;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1444,156,0 chrXV 104541 . G C 1678 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.63;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1711,192,0 chrXV 104808 . G C 1379 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.70;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1412,156,0 chrXV 105097 . A G 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.533;QD=21.82;ReadPosRankSum=1.643;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1735,198,0 chrXV 105232 . T G 2045 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.04;SB=-1.508e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2078,231,0 chrXV 105242 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.74;SB=-1.600e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2180,234,0 chrXV 105429 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.71;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2025,222,0 chrXV 105849 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.12;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2002,219,0 chrXV 105888 . G A 2078 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.84;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2111,237,0 chrXV 106156 . C G 1826 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.82;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1859,204,0 chrXV 106251 . A G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.037;QD=17.55;ReadPosRankSum=1.695;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1683,189,0 chrXV 107138 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4462;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.84;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1758,195,0 chrXV 107387 . A G 2327 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.55;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2360,258,0 chrXV 107465 . A G 2356 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=4.260;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.371;QD=21.04;ReadPosRankSum=1.701;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2389,267,0 chrXV 107546 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.27;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2056,225,0 chrXV 107690 . A G 1633 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.94;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1666,189,0 chrXV 108945 . C T 1011 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=15.80;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1044,111,0 chrXV 108947 . G A 1047 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=16.89;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1080,117,0 chrXV 108950 . T A 1023 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.95;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1056,114,0 chrXV 109023 . G C 1268 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.21;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1301,147,0 chrXV 109106 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.38;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1779,186,0 chrXV 109424 . C T 668 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.90;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:701,78,0 chrXV 109604 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.49;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2040,222,0 chrXV 111244 . A G 1872 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.80;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1905,210,0 chrXV 111365 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.52;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1823,204,0 chrXV 112105 . C A 2519 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.2613;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.29;SB=-1.503e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2552,270,0 chrXV 113345 . G C 2594 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2627,294,0 chrXV 113553 . C T 1820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.420;QD=18.02;ReadPosRankSum=-1.628;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1853,177,0 chrXV 113780 . G T 1014 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1047,117,0 chrXV 114249 . G A 1881 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2893;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.67;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1914,213,0 chrXV 114813 . G A 3585.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=14.3654;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=22.27;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,156:161:99:3585,384,0 chrXV 114937 . G A 2734 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.7830;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.53;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2767,306,0 chrXV 115050 . G A 94.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;DP=251;Dels=0.00;FS=7.599;HaplotypeScore=61.9405;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=0;MQRankSum=-5.894;QD=0.37;ReadPosRankSum=-3.917;SB=-7.501e+01 GT:AD:DP:GQ:PL 0/1:197,54:251:99:124,0,3188 chrXV 115059 . A G 215.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DP=252;Dels=0.00;FS=20.510;HaplotypeScore=48.2546;MLEAC=1;MLEAF=0.500;MQ=41.36;MQ0=0;MQRankSum=-4.100;QD=0.85;ReadPosRankSum=-3.388;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:206,46:252:99:245,0,3053 chrXV 115062 . G A 565.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;DP=253;Dels=0.00;FS=22.477;HaplotypeScore=59.4105;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=0;MQRankSum=-3.255;QD=2.23;ReadPosRankSum=-4.406;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:185,68:253:99:595,0,2682 chrXV 115071 . A G 230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;DP=245;Dels=0.00;FS=3.600;HaplotypeScore=125.3836;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-4.141;QD=0.94;ReadPosRankSum=1.283;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:202,43:245:99:260,0,3037 chrXV 115074 . A G 2408.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=244;Dels=0.00;FS=2.716;HaplotypeScore=73.3567;MLEAC=1;MLEAF=0.500;MQ=40.57;MQ0=0;MQRankSum=3.499;QD=9.87;ReadPosRankSum=-4.214;SB=-7.110e+02 GT:AD:DP:GQ:PL 0/1:90,154:244:99:2438,0,859 chrXV 115083 . A G 553.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=234;Dels=0.00;FS=1.403;HaplotypeScore=171.4309;MLEAC=1;MLEAF=0.500;MQ=39.74;MQ0=0;MQRankSum=-3.637;QD=2.36;ReadPosRankSum=4.153;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:173,60:234:99:583,0,2538 chrXV 115086 . A G 1088.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=145.1041;MLEAC=1;MLEAF=0.500;MQ=39.49;MQ0=0;MQRankSum=-2.788;QD=4.84;ReadPosRankSum=-4.473;SB=-3.210e+02 GT:AD:DP:GQ:PL 0/1:149,76:225:99:1118,0,1965 chrXV 115092 . G A 3289.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.888;DP=209;Dels=0.00;FS=4.137;HaplotypeScore=156.9935;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;MQRankSum=-1.331;QD=15.74;ReadPosRankSum=0.173;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:19,190:209:99:3289,279,0 chrXV 115095 . A G 565.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;DP=207;Dels=0.00;FS=27.144;HaplotypeScore=178.1781;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=0;MQRankSum=-3.914;QD=2.73;ReadPosRankSum=4.186;SB=-4.730e+02 GT:AD:DP:GQ:PL 0/1:142,65:207:99:595,0,2071 chrXV 115104 . G A 1621.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;DP=180;Dels=0.00;FS=7.961;HaplotypeScore=101.2507;MLEAC=1;MLEAF=0.500;MQ=39.05;MQ0=0;MQRankSum=-6.811;QD=9.01;ReadPosRankSum=-3.636;SB=-5.120e+02 GT:AD:DP:GQ:PL 0/1:65,115:180:99:1651,0,727 chrXV 115107 . A G 885.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=181;Dels=0.00;FS=7.549;HaplotypeScore=73.1761;MLEAC=1;MLEAF=0.500;MQ=39.00;MQ0=0;MQRankSum=-4.243;QD=4.89;ReadPosRankSum=-5.231;SB=-3.750e+02 GT:AD:DP:GQ:PL 0/1:106,75:181:99:915,0,1457 chrXV 115116 . G A 1215.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=160;Dels=0.00;FS=7.584;HaplotypeScore=90.5856;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=0;MQRankSum=-7.571;QD=7.59;ReadPosRankSum=-4.255;SB=-2.810e+02 GT:AD:DP:GQ:PL 0/1:72,88:160:99:1245,0,923 chrXV 115119 . A G 246.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=158;Dels=0.00;FS=5.828;HaplotypeScore=95.6320;MLEAC=1;MLEAF=0.500;MQ=40.25;MQ0=0;MQRankSum=-2.405;QD=1.56;ReadPosRankSum=-3.996;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:124,34:158:99:276,0,1841 chrXV 115122 . A G 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=110.1919;MLEAC=1;MLEAF=0.500;MQ=40.23;MQ0=0;MQRankSum=-3.294;QD=0.39;ReadPosRankSum=-0.725;SB=-1.501e+01 GT:AD:DP:GQ:PL 0/1:131,22:153:89:89,0,2011 chrXV 115128 . G A 689.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=127;Dels=0.00;FS=6.088;HaplotypeScore=76.2822;MLEAC=1;MLEAF=0.500;MQ=41.91;MQ0=0;MQRankSum=-3.871;QD=5.43;ReadPosRankSum=-3.759;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:70,57:127:99:719,0,1134 chrXV 115164 . A T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=58.70;MQ0=0;MQRankSum=-0.211;QD=1.87;ReadPosRankSum=-1.833;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:15,8:23:73:73,0,227 chrXV 115307 . T C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.923;QD=20.48;ReadPosRankSum=1.700;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,106:111:99:2306,258,0 chrXV 115336 . G T 2450 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.08;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2483,270,0 chrXV 115446 . T C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.047;QD=18.91;ReadPosRankSum=1.692;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1678,183,0 chrXV 115590 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.70;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1940,207,0 chrXV 116045 . T C 959 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.40;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:992,111,0 chrXV 116289 . C T 568 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:601,66,0 chrXV 116385 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.46;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1063,111,0 chrXV 116414 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.80;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1104,126,0 chrXV 116677 . T C 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=60;Dels=0.00;FS=3.485;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.434;QD=18.07;ReadPosRankSum=1.673;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:1,57:60:99:1117,123,0 chrXV 116712 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.79;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1218,129,0 chrXV 116735 . G A 1197 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.00;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1230,132,0 chrXV 116967 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.53;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1456,159,0 chrXV 117014 . T C 1246 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.48;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1279,138,0 chrXV 117089 . G T 1815 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.13;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1848,204,0 chrXV 117527 . T A 1754 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=20.88;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1787,195,0 chrXV 117610 . C T 2124 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=23.34;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2157,228,0 chrXV 117678 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=0;QD=18.62;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1113,120,0 chrXV 117689 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9523;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=16.82;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:857,93,0 chrXV 117698 . C T 510 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.00;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:57:543,57,0 chrXV 123679 . T C 463 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.18;MQ0=0;QD=11.57;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:54:496,54,0 chrXV 125835 . C A 1094 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.64;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1127,120,0 chrXV 126333 . T C 1693 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.54;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1726,189,0 chrXV 126617 . T C 2355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.706;QD=21.81;ReadPosRankSum=1.668;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2388,261,0 chrXV 126866 . C G 1037 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=14.21;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1070,120,0 chrXV 126868 . T G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=77;Dels=0.00;FS=9.720;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.947;QD=15.00;ReadPosRankSum=1.640;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,74:77:99:1188,135,0 chrXV 127096 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.93;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1373,153,0 chrXV 127239 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.47;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1077,114,0 chrXV 127240 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.69;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1088,114,0 chrXV 128405 . G A 2533 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.67;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2566,276,0 chrXV 128527 . T C 1896 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.55;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1929,216,0 chrXV 128585 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.46;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1512,165,0 chrXV 128594 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.30;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1497,165,0 chrXV 128636 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.27;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1714,180,0 chrXV 128970 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.00;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1321,144,0 chrXV 129004 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.12;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1216,126,0 chrXV 129347 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1333,141,0 chrXV 129440 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.24;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1450,159,0 chrXV 130049 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1369,150,0 chrXV 130079 . A C 1834 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.38;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1867,207,0 chrXV 130602 . A G 1109 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.92;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1142,126,0 chrXV 131471 . T G 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.283;DP=98;Dels=0.00;FS=3.191;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.591;QD=21.51;ReadPosRankSum=1.273;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2141,240,0 chrXV 131694 . A G 1638 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.22;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1671,186,0 chrXV 131858 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1420,150,0 chrXV 132086 . T A 1706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.560;DP=86;Dels=0.00;FS=6.162;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.060;QD=19.84;ReadPosRankSum=2.894;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1739,192,0 chrXV 132120 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.36;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2182,234,0 chrXV 132501 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1679,180,0 chrXV 132600 . A G 1579 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=11.072;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.137;QD=24.67;ReadPosRankSum=1.624;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1612,177,0 chrXV 132646 . C G 1555 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.21;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1588,174,0 chrXV 132710 . A G 782 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.34;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:815,90,0 chrXV 132713 . G A 755 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.87;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:84:788,84,0 chrXV 132965 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.68;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2164,231,0 chrXV 133313 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.18;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1395,156,0 chrXV 133472 . C A 962 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.15;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:995,108,0 chrXV 134063 . G A 1277 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.06;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1310,141,0 chrXV 134633 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.90;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1642,186,0 chrXV 135272 . T C 2261 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.53;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2294,255,0 chrXV 135812 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.18;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2096,219,0 chrXV 137304 . G T 1586 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.58;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1619,171,0 chrXV 137721 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=15.24;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:72:658,72,0 chrXV 137900 . T A 776 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.51;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:87:809,87,0 chrXV 137942 . G T 645 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=15.73;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:75:678,75,0 chrXV 138392 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1710,186,0 chrXV 138539 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1300,138,0 chrXV 138847 . T C 2001 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2034,225,0 chrXV 139359 . T G 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.60;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2107,234,0 chrXV 139611 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.90;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1642,180,0 chrXV 139629 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.83;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1762,189,0 chrXV 139719 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.68;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1194,135,0 chrXV 139908 . A G 2223 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.16;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2256,252,0 chrXV 139962 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.62;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1684,189,0 chrXV 140446 . G C 963 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=15.79;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:996,111,0 chrXV 140456 . T C 723 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=13.15;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:756,84,0 chrXV 140480 . G A 734 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=12.88;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:84:767,84,0 chrXV 140491 . T C 717 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=12.80;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:84:750,84,0 chrXV 140493 . T C 720 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;QD=13.09;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:84:753,84,0 chrXV 140532 . A G 928 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.87;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:961,108,0 chrXV 140746 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=19.79;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1616,174,0 chrXV 140760 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=3.6359;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=0.289;QD=19.01;ReadPosRankSum=1.684;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1402,159,0 chrXV 140890 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.05;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1775,201,0 chrXV 141126 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.57;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1501,165,0 chrXV 141147 . T G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=5.535;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.428;QD=18.15;ReadPosRankSum=1.695;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,92:95:99:1757,201,0 chrXV 141677 . A C 1318 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.97;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1351,150,0 chrXV 142346 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.28;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2162,237,0 chrXV 142364 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.91;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2323,246,0 chrXV 143597 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.89;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1981,210,0 chrXV 143811 . G A 1996 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.46;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2029,219,0 chrXV 143896 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.21;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1395,156,0 chrXV 144117 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3932;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.96;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2024,219,0 chrXV 144655 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.87;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1656,177,0 chrXV 145028 . T C 854 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.08;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:887,99,0 chrXV 145331 . A G 1175 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1208,138,0 chrXV 145354 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.98;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1332,150,0 chrXV 145519 . T C 901 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.35;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:934,102,0 chrXV 145551 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1164,123,0 chrXV 145716 . C T 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.102;DP=89;Dels=0.00;FS=4.130;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.693;QD=20.55;ReadPosRankSum=1.299;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1862,178,0 chrXV 146225 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.40;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1604,168,0 chrXV 146231 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.52;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1458,162,0 chrXV 147274 . T A 866 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.62;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:899,96,0 chrXV 147540 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.15;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1942,207,0 chrXV 147582 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.17;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2399,252,0 chrXV 147891 . A C 2273 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.697;QD=22.50;ReadPosRankSum=1.697;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2306,255,0 chrXV 147981 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.31;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1578,174,0 chrXV 148131 . A G 1729 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.45;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1762,195,0 chrXV 148159 . T C 2049 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.49;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2082,231,0 chrXV 148296 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.77;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1240,138,0 chrXV 148695 . C T 895 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.31;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:928,102,0 chrXV 148719 . C G 818 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.40;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:851,93,0 chrXV 148734 . C T 837 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=16.10;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:870,96,0 chrXV 148894 . A G 2009 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=86;Dels=0.00;FS=12.331;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.353;QD=23.36;ReadPosRankSum=2.824;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:2042,228,0 chrXV 148926 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.3706;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.53;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1627,180,0 chrXV 149046 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.68;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:75:99:1584,165,0 chrXV 149100 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.27;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1837,204,0 chrXV 149214 . A G 3190 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.00;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,143:145:99:3223,357,0 chrXV 149247 . G C 3162 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.59;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,138:140:99:3195,357,0 chrXV 149394 . T C 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.320;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.930;QD=16.38;ReadPosRankSum=2.859;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:4,99:103:99:1720,189,0 chrXV 149404 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=17.36;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1717,195,0 chrXV 149706 . A T 2551 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=14.3431;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.62;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2584,279,0 chrXV 150111 . G A 2093 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.27;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2126,231,0 chrXV 150293 . A C 1902 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.45;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1935,213,0 chrXV 150306 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.29;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1859,204,0 chrXV 150390 . G A 2336 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.84;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2369,252,0 chrXV 150501 . C G 1091 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.73;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1124,126,0 chrXV 150653 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.49;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1580,177,0 chrXV 150756 . T A 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.718;QD=23.02;ReadPosRankSum=1.690;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1967,213,0 chrXV 150962 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.87;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2274,255,0 chrXV 151148 . C A 1982 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.18;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,104:109:99:2015,228,0 chrXV 151183 . T C 2163 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.30;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2196,246,0 chrXV 151259 . T C 2476 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=12.4953;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.30;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2509,279,0 chrXV 151304 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=13.3874;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.18;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,115:119:99:2554,270,0 chrXV 151369 . T C 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.783;QD=20.42;ReadPosRankSum=1.542;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1524,168,0 chrXV 151553 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1837,207,0 chrXV 151709 . A C 1834 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.13;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1867,207,0 chrXV 151786 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.02;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1269,141,0 chrXV 151910 . T A 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=83;Dels=0.00;FS=2.970;HaplotypeScore=8.6979;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.887;QD=20.33;ReadPosRankSum=2.390;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1720,192,0 chrXV 151997 . G A 2120 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.32;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2153,237,0 chrXV 152141 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.83;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1104,120,0 chrXV 152407 . T G 1494 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.30;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1527,171,0 chrXV 153180 . T G 2867 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.75;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2900,321,0 chrXV 153242 . C T 2199 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.46;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2232,240,0 chrXV 153262 . T C 1678 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=16.61;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1711,189,0 chrXV 153279 . A T 1950 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.67;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1983,213,0 chrXV 153317 . T C 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.133;QD=14.79;ReadPosRankSum=1.666;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1571,177,0 chrXV 153362 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.33;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1811,192,0 chrXV 153615 . T C 2595 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.76;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2628,288,0 chrXV 154043 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.68;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2032,228,0 chrXV 154056 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.30;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1918,207,0 chrXV 154073 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.90;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1859,195,0 chrXV 154165 . T C 2974 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.65;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3007,333,0 chrXV 154180 . T C 2834 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.28;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2867,315,0 chrXV 154799 . T G 473 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.78;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:506,57,0 chrXV 154898 . A G 1002 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.98;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1035,114,0 chrXV 154995 . A T 596 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.03;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:72:629,72,0 chrXV 155009 . T C 598 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.69;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:69:631,69,0 chrXV 155025 . T C 361 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=14.44;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:45:394,45,0 chrXV 155221 . G A 860 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.05;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:893,99,0 chrXV 155668 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.79;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1563,168,0 chrXV 155674 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.16;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1487,159,0 chrXV 155997 . C A 1682 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7133;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.02;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1715,183,0 chrXV 156059 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=18.58;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1575,177,0 chrXV 156082 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=16.54;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1472,168,0 chrXV 156178 . G A 1610 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.12;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1643,180,0 chrXV 156337 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.21;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1581,177,0 chrXV 156508 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.64;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1506,171,0 chrXV 156684 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.94;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1854,195,0 chrXV 156746 . A G 1314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.051;QD=20.86;ReadPosRankSum=1.619;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:1,60:63:99:1347,150,0 chrXV 156784 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.36;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1369,156,0 chrXV 156847 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.4169;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=14.82;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1041,120,0 chrXV 157101 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.61;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1826,195,0 chrXV 158074 . T C 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.929;QD=21.90;ReadPosRankSum=1.682;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1566,171,0 chrXV 158239 . A G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.155;DP=117;Dels=0.00;FS=12.273;HaplotypeScore=7.5279;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=0.008;QD=18.49;ReadPosRankSum=3.336;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:4,112:117:99:2196,246,0 chrXV 158453 . T C 2618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=3.634;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.268;QD=20.61;ReadPosRankSum=1.650;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2651,288,0 chrXV 158905 . G T 889 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9778;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.91;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:922,96,0 chrXV 159066 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.11;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:922,99,0 chrXV 159092 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=14.56;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:965,105,0 chrXV 159120 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.47;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1425,162,0 chrXV 159369 . G A 655 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.83;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:72:688,72,0 chrXV 159725 . A G 1024 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=23.27;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1057,120,0 chrXV 159763 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=21.98;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1242,150,0 chrXV 160139 . G A 1066 SnpCluster AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8117;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=10.35;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1099,129,0 chrXV 160141 . T C 884 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;MQRankSum=-1.664;QD=8.67;ReadPosRankSum=1.630;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:917,111,0 chrXV 160142 . G T 866 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9796;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;MQRankSum=-1.664;QD=8.49;ReadPosRankSum=1.664;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:899,108,0 chrXV 160153 . G C 806 SnpCluster AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=7.90;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:839,102,0 chrXV 160154 . G A 813 SnpCluster AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=0;QD=7.82;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:846,102,0 chrXV 160163 . G A 877 SnpCluster AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=7.25;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,118:121:99:910,111,0 chrXV 160403 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.65;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1904,204,0 chrXV 160688 . G A 2188 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.26;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2221,237,0 chrXV 160982 . G A 225.01 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=38.9083;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=3.04;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:27:258,27,0 chrXV 161174 . T A 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.559;HaplotypeScore=6.3347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.910;QD=21.00;ReadPosRankSum=1.615;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1293,141,0 chrXV 161509 . T C 1811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.981;QD=21.56;ReadPosRankSum=1.649;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,82:84:99:1844,210,0 chrXV 161695 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.32;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1717,192,0 chrXV 161986 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3666;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.70;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2186,237,0 chrXV 162027 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.77;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2010,216,0 chrXV 162043 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.460;QD=18.49;ReadPosRankSum=1.697;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1864,207,0 chrXV 162065 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.12;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1597,174,0 chrXV 162093 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=116;Dels=0.00;FS=11.286;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.029;QD=16.24;ReadPosRankSum=2.365;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:2,114:116:99:1917,213,0 chrXV 162324 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.48;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2528,273,0 chrXV 162379 . G A 1943 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1521;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.08;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1976,216,0 chrXV 162419 . G C 1618 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.22;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1651,183,0 chrXV 162643 . G T 2484 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.70;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2517,273,0 chrXV 162766 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.27;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2024,222,0 chrXV 163253 . T C 2199 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.55;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2232,249,0 chrXV 163702 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=2.910;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.527;QD=19.80;ReadPosRankSum=2.403;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,103:107:99:2152,234,0 chrXV 163708 . G C 2084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=4.058;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=1.701;QD=18.61;ReadPosRankSum=1.485;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2117,234,0 chrXV 163776 . C G 1345 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=16.60;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1378,153,0 chrXV 163792 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=11.53;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1255,135,0 chrXV 163799 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=12.72;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1420,153,0 chrXV 163852 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.0652;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=15.35;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:1936,210,0 chrXV 163912 . A T 1786 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.86;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1819,201,0 chrXV 163943 . A C 1967 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.91;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2000,219,0 chrXV 163945 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.59;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1898,210,0 chrXV 164284 . T A 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.136;QD=18.51;ReadPosRankSum=1.695;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1754,195,0 chrXV 164320 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.3860;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=19.67;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2079,228,0 chrXV 164632 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.55;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1538,162,0 chrXV 164708 . A G 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.293;DP=97;Dels=0.00;FS=9.236;HaplotypeScore=13.0974;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.136;QD=17.06;ReadPosRankSum=3.366;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1688,183,0 chrXV 164935 . T C 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=81;Dels=0.00;FS=6.762;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.464;QD=18.68;ReadPosRankSum=2.296;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1546,177,0 chrXV 165055 . T C 2744 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.25;SB=-1.407e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2777,303,0 chrXV 165797 . C A 1621 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1654,177,0 chrXV 166007 . A G 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.082;QD=18.67;ReadPosRankSum=1.622;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1209,135,0 chrXV 166009 . A C 1156 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.95;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1189,132,0 chrXV 166046 . T A 1542 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.77;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1575,174,0 chrXV 166088 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.28;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1548,171,0 chrXV 166163 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.42;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1597,168,0 chrXV 166324 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.15;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1175,123,0 chrXV 166700 . A T 1634 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.50;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1667,186,0 chrXV 167021 . A T 2504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=4.464;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.175;QD=22.56;ReadPosRankSum=1.700;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2537,273,0 chrXV 167078 . A T 1733 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1766,189,0 chrXV 167489 . C T 809 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.45;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:56:93:842,93,0 chrXV 167717 . A C 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=48;Dels=0.00;FS=7.301;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.284;QD=22.48;ReadPosRankSum=2.296;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:1112,120,0 chrXV 167933 . C T 2489 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.64;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2522,267,0 chrXV 168295 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.091;QD=21.24;ReadPosRankSum=1.689;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1796,198,0 chrXV 168347 . C G 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.51;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1736,195,0 chrXV 168349 . A C 1722 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.94;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1755,195,0 chrXV 168404 . A C 1909 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.68;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1942,213,0 chrXV 168465 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.26;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2556,273,0 chrXV 168708 . C T 2011 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.52;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2044,228,0 chrXV 168744 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.36;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1913,213,0 chrXV 168885 . C T 2223 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.78;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2256,240,0 chrXV 169333 . T C 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.130;QD=23.00;ReadPosRankSum=1.620;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:1,92:95:99:2218,243,0 chrXV 169755 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.94;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1018,111,0 chrXV 169911 . A G 745 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.632;QD=15.20;ReadPosRankSum=2.350;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,47:49:87:778,87,0 chrXV 170000 . T C 662 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=16.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:81:695,81,0 chrXV 170199 . A G 1057 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1090,123,0 chrXV 170281 . A C 1102 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1135,129,0 chrXV 170583 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.76;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1312,144,0 chrXV 170671 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.62;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1225,138,0 chrXV 170728 . T C 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=11.8421;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.551;QD=19.84;ReadPosRankSum=1.693;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1779,198,0 chrXV 170921 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.76;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2241,249,0 chrXV 171213 . G A 2495 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.10;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2528,270,0 chrXV 171288 . T C 3010 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.65;SB=-1.546e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:3043,342,0 chrXV 171306 . C T 3180 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.63;SB=-1.877e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3213,342,0 chrXV 171983 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5089;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.19;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2067,225,0 chrXV 172515 . T C 3281.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-1.621e+03 GT:AD:DP:GQ:PL 1/1:0,155:156:99:3281,366,0 chrXV 172956 . A G 2505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.526;QD=22.37;ReadPosRankSum=1.701;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2538,285,0 chrXV 173080 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.44;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1505,165,0 chrXV 173112 . T C 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.393;HaplotypeScore=7.4437;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.315;QD=21.51;ReadPosRankSum=1.680;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1474,162,0 chrXV 174201 . A G 2613 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.14;SB=-1.519e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2646,291,0 chrXV 174207 . T C 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.243;QD=21.79;ReadPosRankSum=1.702;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2517,273,0 chrXV 174675 . T C 785 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.39;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:90:818,90,0 chrXV 178377 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.69;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1466,159,0 chrXV 179481 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.00;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1837,198,0 chrXV 180210 . C T 2629 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.66;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,114:116:99:2662,285,0 chrXV 180534 . A G 852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;DP=59;Dels=0.00;FS=2.628;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.397;QD=14.44;ReadPosRankSum=2.467;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:99:885,99,0 chrXV 180685 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1178,126,0 chrXV 180906 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=4.130;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.394;QD=20.44;ReadPosRankSum=1.654;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:99:953,108,0 chrXV 181215 . A G 1287 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.93;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1320,147,0 chrXV 181216 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.18;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1405,147,0 chrXV 181290 . G A 1145 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.89;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1178,126,0 chrXV 181602 . C A 1176 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.67;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1209,135,0 chrXV 181858 . G T 1725 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.30;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1758,186,0 chrXV 182170 . A T 1951 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.71;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1984,216,0 chrXV 182727 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.591;QD=19.32;ReadPosRankSum=1.690;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1617,180,0 chrXV 182737 . A G 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=-0.993;QD=18.89;ReadPosRankSum=1.693;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1714,192,0 chrXV 182738 . C A 1749 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.87;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1782,189,0 chrXV 182884 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.67;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2121,228,0 chrXV 182917 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.88;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1687,186,0 chrXV 182941 . G A 900 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=11.69;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:933,102,0 chrXV 182944 . C T 836 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=11.30;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:96:869,96,0 chrXV 182946 . T C 760 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=10.86;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:90:793,90,0 chrXV 182971 . C T 791 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=11.81;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:90:824,90,0 chrXV 183010 . A T 1036 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.19;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1069,117,0 chrXV 183184 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.29;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1885,204,0 chrXV 183196 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.60;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2013,213,0 chrXV 183205 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.0765;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.37;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2260,240,0 chrXV 183901 . T A 1716 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.88;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1749,189,0 chrXV 183991 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.10;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2009,213,0 chrXV 184072 . G A 927 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.07;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:960,102,0 chrXV 184291 . A C 2502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=0.000;QD=20.85;ReadPosRankSum=1.703;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2535,282,0 chrXV 184609 . T A 1889 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.31;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1922,216,0 chrXV 184627 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.01;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2050,219,0 chrXV 185240 . A T 2288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=102;Dels=0.00;FS=3.365;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.189;QD=22.43;ReadPosRankSum=1.698;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2321,252,0 chrXV 185566 . C A 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.08;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1593,168,0 chrXV 185828 . C T 2355 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.03;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2388,255,0 chrXV 185836 . G A 2243 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.58;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2276,243,0 chrXV 185932 . A T 1885 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=22.44;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1918,207,0 chrXV 185951 . T G 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.178;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.118;QD=21.09;ReadPosRankSum=1.688;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1720,192,0 chrXV 185983 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.02;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2197,237,0 chrXV 186571 . G A 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.501;QD=22.43;ReadPosRankSum=1.594;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1738,186,0 chrXV 186751 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.80;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1617,174,0 chrXV 186759 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.92;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1433,159,0 chrXV 186776 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=15.94;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1101,123,0 chrXV 186810 . T C 1064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.082;QD=16.89;ReadPosRankSum=1.677;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1097,123,0 chrXV 186970 . T G 1803 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9477;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.46;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1836,204,0 chrXV 186998 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.82;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1530,165,0 chrXV 187008 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.10;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1463,162,0 chrXV 187179 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.91;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1810,198,0 chrXV 187197 . A G 2013 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.41;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2046,228,0 chrXV 187293 . A G 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.628;QD=19.73;ReadPosRankSum=1.663;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2006,225,0 chrXV 187423 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0621;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.77;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1840,195,0 chrXV 187590 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.76;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1307,144,0 chrXV 188321 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.55;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1776,189,0 chrXV 188416 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.46;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1298,141,0 chrXV 188616 . A C 1513 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.93;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1546,171,0 chrXV 188662 . A T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.142;QD=22.80;ReadPosRankSum=1.562;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1424,150,0 chrXV 188972 . T C 1173 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=24.44;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1206,135,0 chrXV 189241 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.264;QD=21.85;ReadPosRankSum=1.615;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1322,144,0 chrXV 189256 . G A 1163 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.89;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1196,132,0 chrXV 189304 . A C 1424 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.58;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1457,165,0 chrXV 189446 . G A 864 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=23.35;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:897,96,0 chrXV 189504 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.87;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1202,129,0 chrXV 189653 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.557;QD=23.27;ReadPosRankSum=1.670;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1336,144,0 chrXV 189700 . T A 1129 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.09;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1162,123,0 chrXV 189822 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.46;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1874,210,0 chrXV 189850 . T C 1958 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.51;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1991,219,0 chrXV 190129 . T A 1203 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1865;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=12.66;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1236,132,0 chrXV 191548 . T C 1066 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1099,120,0 chrXV 192333 . T G 1971 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6587;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.97;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2004,225,0 chrXV 192748 . C A 1516 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.63;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1549,168,0 chrXV 193147 . G A 2776 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.4586;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.93;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2809,297,0 chrXV 193217 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.20;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2164,243,0 chrXV 193609 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=12.0241;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.93;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1718,186,0 chrXV 193743 . G A 2292 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.9428;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.14;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2325,252,0 chrXV 193761 . A G 2921 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8761;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.74;SB=-1.841e+03 GT:AD:DP:GQ:PL 1/1:0,147:148:99:2954,327,0 chrXV 193911 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.36;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1592,171,0 chrXV 194198 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.37;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2234,252,0 chrXV 194961 . T G 2127 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=60.50;MQ0=0;MQRankSum=-0.883;QD=20.85;ReadPosRankSum=1.698;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2160,240,0 chrXV 195072 . A C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=89;Dels=0.00;FS=2.966;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.398;QD=20.58;ReadPosRankSum=2.394;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1865,207,0 chrXV 195644 . A C 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=125;Dels=0.00;FS=3.011;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.525;QD=18.87;ReadPosRankSum=2.391;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:2,123:125:99:2392,264,0 chrXV 195929 . A G 2877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=3.035;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.059;QD=19.84;ReadPosRankSum=2.416;SB=-1.798e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2910,327,0 chrXV 195938 . T C 2926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=146;Dels=0.00;FS=3.131;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.685;QD=20.04;ReadPosRankSum=1.685;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,145:146:99:2959,327,0 chrXV 196465 . C T 1301 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1334,141,0 chrXV 196497 . G A 1204 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1237,129,0 chrXV 196554 . C G 1098 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1131,123,0 chrXV 196616 . G A 696 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.47;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:729,78,0 chrXV 196662 . T C 592 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=16.44;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:625,72,0 chrXV 196695 . T C 699 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=14.87;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:732,81,0 chrXV 196803 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=15.64;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1081,117,0 chrXV 197127 . G T 197.03 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=11.59;SB=-2.367e-02 GT:AD:DP:GQ:PL 1/1:0,15:17:24:230,24,0 chrXV 197146 . A T 1187 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1220,129,0 chrXV 197164 . T A 1553 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.892;QD=15.85;ReadPosRankSum=2.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1586,168,0 chrXV 197183 . C T 1840 filter AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1873,204,0 chrXV 197943 . T C 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=5.006;HaplotypeScore=5.5621;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.152;QD=15.97;ReadPosRankSum=1.702;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:1870,213,0 chrXV 197955 . G C 1971 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=16.29;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2004,231,0 chrXV 198213 . A C 1849 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.50;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1882,207,0 chrXV 198516 . G A 2198 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.1170;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.76;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2231,246,0 chrXV 198570 . A G 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.211;QD=20.04;ReadPosRankSum=1.620;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1897,210,0 chrXV 198587 . T G 1480 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.22;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1513,165,0 chrXV 198772 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.58;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1659,186,0 chrXV 198924 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.91;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2026,225,0 chrXV 198980 . A G 1241 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=3.819;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.732;QD=22.56;ReadPosRankSum=1.667;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:1,52:55:99:1274,141,0 chrXV 199130 . T C 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.019;QD=21.68;ReadPosRankSum=1.681;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1507,168,0 chrXV 199186 . T C 1776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=7.4291;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.976;QD=20.41;ReadPosRankSum=1.692;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1809,201,0 chrXV 200443 . C T 2031 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:2064,222,0 chrXV 200683 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.97;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1848,204,0 chrXV 201256 . G A 811 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.34;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:844,93,0 chrXV 201943 . A G 2762 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.5942;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.66;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2795,303,0 chrXV 202185 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.5818;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.86;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1819,192,0 chrXV 202640 . G A 2594 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.95;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2627,285,0 chrXV 202849 . C T 1499 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.82;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1532,168,0 chrXV 203056 . T G 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=4.393;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.708;QD=19.36;ReadPosRankSum=1.708;SB=-1.317e+03 GT:AD:DP:GQ:PL 1/1:1,142:143:99:2801,312,0 chrXV 203132 . C T 2428 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3630;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.39;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2461,261,0 chrXV 203233 . A G 2009 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.08;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:91:99:2042,228,0 chrXV 203284 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.55;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1777,204,0 chrXV 203290 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.79;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1545,174,0 chrXV 203344 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.6353;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=13.90;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1409,150,0 chrXV 203386 . A C 1852 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1885,210,0 chrXV 203557 . T C 3109 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.37;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3142,354,0 chrXV 203632 . T C 2741 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.93;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2774,306,0 chrXV 203890 . T C 2604 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.2795;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.00;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2637,291,0 chrXV 203947 . T C 2100 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1315;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=17.65;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2133,234,0 chrXV 204409 . C T 850 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.35;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:883,93,0 chrXV 204475 . G A 766 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.32;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:799,87,0 chrXV 204593 . C T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.544;DP=74;Dels=0.00;FS=37.579;HaplotypeScore=42.5366;MLEAC=1;MLEAF=0.500;MQ=52.92;MQ0=1;MQRankSum=-1.546;QD=0.38;ReadPosRankSum=-1.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,34:74:58:58,0,311 chrXV 204818 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.46;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2601,282,0 chrXV 205055 . C T 1244 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.14;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1277,138,0 chrXV 205095 . T A 1536 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.69;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1569,168,0 chrXV 205106 . T A 1554 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.19;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1587,168,0 chrXV 205126 . T C 1829 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.05;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1862,201,0 chrXV 205234 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.0142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1845,210,0 chrXV 205723 . C G 2256 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.28;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2289,255,0 chrXV 205739 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.34;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2250,243,0 chrXV 205904 . T A 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=6.370;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.331;QD=22.00;ReadPosRankSum=2.373;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1441,153,0 chrXV 205945 . A T 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.210;HaplotypeScore=10.9393;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.420;QD=22.29;ReadPosRankSum=1.701;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2507,264,0 chrXV 205972 . T C 3023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=163;Dels=0.00;FS=13.211;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.306;QD=18.55;ReadPosRankSum=3.330;SB=-1.834e+03 GT:AD:DP:GQ:PL 1/1:4,159:163:99:3056,342,0 chrXV 205985 . T C 3286.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=176;Dels=0.00;FS=3.680;HaplotypeScore=3.6499;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.366;QD=18.67;ReadPosRankSum=1.435;SB=-1.891e+03 GT:AD:DP:GQ:PL 1/1:1,174:176:99:3286,357,0 chrXV 206166 . T A 2560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=25.35;ReadPosRankSum=1.697;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2593,270,0 chrXV 206259 . T A 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-1.219;QD=20.30;ReadPosRankSum=-0.032;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,107:110:99:2266,246,0 chrXV 206268 . A G 2283 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.02;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2316,261,0 chrXV 206718 . A G 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.112;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.4087;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.016;QD=20.39;ReadPosRankSum=2.290;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,75:79:99:1644,186,0 chrXV 206970 . T C 1945 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.26;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1978,225,0 chrXV 206985 . A G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.261;QD=18.60;ReadPosRankSum=1.698;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:1949,213,0 chrXV 207058 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.71;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1900,213,0 chrXV 207203 . G A 2302 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2335,255,0 chrXV 207236 . T G 2506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.4010;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.490;QD=23.42;ReadPosRankSum=1.699;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2539,282,0 chrXV 207397 . G A 2378 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.63;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,142:143:99:2411,264,0 chrXV 207408 . C T 2565 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.8118;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.19;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:2598,273,0 chrXV 207452 . T G 2467 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.62;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:2500,279,0 chrXV 208002 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.21;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1235,135,0 chrXV 208010 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=16.27;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1237,138,0 chrXV 208100 . A G 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.858;DP=57;Dels=0.00;FS=8.208;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=-0.547;QD=13.23;ReadPosRankSum=3.202;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:4,53:57:87:787,87,0 chrXV 208106 . T C 697 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=14.83;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:730,81,0 chrXV 208220 . C T 1100 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.58;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1133,123,0 chrXV 208309 . T A 1180 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.70;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1213,129,0 chrXV 208421 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.35;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1374,153,0 chrXV 208452 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.91;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1435,156,0 chrXV 208517 . A C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=6.088;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.572;QD=24.12;ReadPosRankSum=1.679;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1625,180,0 chrXV 208556 . T C 2202 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.47;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2235,249,0 chrXV 208643 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.05;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1216,132,0 chrXV 208678 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.22;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1306,144,0 chrXV 208904 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.74;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:1968,207,0 chrXV 208980 . A G 1944 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.68;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1977,225,0 chrXV 209157 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.60;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1681,186,0 chrXV 209576 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.46;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1363,150,0 chrXV 209698 . T C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=8.111;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.132;QD=19.92;ReadPosRankSum=2.382;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1487,165,0 chrXV 209867 . T G 1629 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.36;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1662,183,0 chrXV 209903 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.53;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1691,189,0 chrXV 209963 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=15.57;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1341,141,0 chrXV 209967 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=14.70;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1209,129,0 chrXV 210056 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.39;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1359,150,0 chrXV 210115 . T C 1235 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=77;Dels=0.00;FS=5.430;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;MQRankSum=-1.145;QD=16.04;ReadPosRankSum=2.856;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:3,74:77:99:1268,141,0 chrXV 210116 . T C 1209 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.197;DP=78;Dels=0.00;FS=2.783;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-0.300;QD=15.50;ReadPosRankSum=2.387;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1242,138,0 chrXV 210122 . A G 1260 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9559;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=15.56;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1293,147,0 chrXV 210327 . C A 1037 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.19;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1070,117,0 chrXV 210877 . T C 2633 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.95;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,129:132:99:2666,288,0 chrXV 210958 . A T 3529.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-2.010e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:3529,390,0 chrXV 211015 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.1230;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.57;SB=-1.678e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2945,315,0 chrXV 211164 . C G 1879 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.99;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1912,213,0 chrXV 211180 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.34;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1592,168,0 chrXV 212987 . C T 1513 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.8920;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.10;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1546,165,0 chrXV 213206 . G C 1339 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.09;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1372,150,0 chrXV 213212 . A G 1156 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=15.01;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1189,135,0 chrXV 213233 . A T 1074 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=15.34;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1107,120,0 chrXV 213775 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1732;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.51;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1872,198,0 chrXV 213885 . T C 437 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.48;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:54:470,54,0 chrXV 214699 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.049;QD=20.37;ReadPosRankSum=1.441;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2233,246,0 chrXV 214734 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.20;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1392,153,0 chrXV 214878 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.02;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1781,192,0 chrXV 215043 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.926;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.029;QD=20.00;ReadPosRankSum=2.363;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1733,192,0 chrXV 215265 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0657;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.24;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1188,129,0 chrXV 215310 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1476,165,0 chrXV 215484 . T C 995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.135;QD=17.16;ReadPosRankSum=1.553;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1028,117,0 chrXV 215496 . C G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.447;QD=16.33;ReadPosRankSum=1.509;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1078,120,0 chrXV 215550 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.28;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1714,183,0 chrXV 215865 . G A 2248 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=22.48;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2281,243,0 chrXV 215898 . T G 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.459;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.097;QD=21.26;ReadPosRankSum=2.367;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1925,213,0 chrXV 216039 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.83;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1834,210,0 chrXV 216176 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5916;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;QD=15.93;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1212,132,0 chrXV 216247 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.97;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1770,186,0 chrXV 216376 . A G 2767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=13.156;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.640;QD=22.68;ReadPosRankSum=2.389;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:2,119:122:99:2800,312,0 chrXV 216399 . C A 3003 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0466;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.41;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:3036,321,0 chrXV 217521 . G A 3091 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.47;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,143:144:99:3124,339,0 chrXV 217641 . C T 4064.01 PASS AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.83;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,177:178:99:4064,441,0 chrXV 218142 . G A 981 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.08;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1014,111,0 chrXV 218172 . A G 930 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:963,105,0 chrXV 218547 . C T 1166 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.80;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1199,129,0 chrXV 219137 . C T 3965.01 PASS AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=9.9271;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.33;SB=-1.534e+03 GT:AD:DP:GQ:PL 1/1:0,195:195:99:3965,420,0 chrXV 219832 . T C 1903 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.91;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1936,216,0 chrXV 220335 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.10;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1450,159,0 chrXV 220341 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.36;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1358,144,0 chrXV 220371 . T A 1113 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=15.25;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1146,126,0 chrXV 220591 . T C 2450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=109;Dels=0.00;FS=6.103;HaplotypeScore=5.9710;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.019;QD=22.48;ReadPosRankSum=2.916;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:3,105:109:99:2483,276,0 chrXV 220730 . A G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=0;MQRankSum=1.316;QD=0.41;ReadPosRankSum=-3.115;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:64,4:68:35:58,0,35 chrXV 220880 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2088,222,0 chrXV 220974 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.94;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1688,189,0 chrXV 221075 . G C 2184 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.23;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2217,243,0 chrXV 221112 . A G 1797 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.53;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1830,204,0 chrXV 221114 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.48;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1806,201,0 chrXV 221510 . T C 1329 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.14;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1362,153,0 chrXV 222131 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.21;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1495,162,0 chrXV 222860 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.07;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1659,183,0 chrXV 222869 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.14;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1430,159,0 chrXV 223192 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.81;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1858,204,0 chrXV 223207 . T A 1812 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.36;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1845,195,0 chrXV 223438 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.35;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1063,114,0 chrXV 223663 . A G 1930 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.827;QD=17.23;ReadPosRankSum=1.701;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:1963,219,0 chrXV 224038 . C G 935 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.00;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:968,108,0 chrXV 224207 . C T 405 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=20.25;SB=-6.785e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:438,45,0 chrXV 224217 . C T 285 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=11.87;SB=-8.698e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:36:318,36,0 chrXV 224245 . C T 678 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.60;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:75:711,75,0 chrXV 224453 . T G 2704 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=26.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2737,306,0 chrXV 224504 . C T 1127 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1160,123,0 chrXV 225137 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.52;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1311,144,0 chrXV 225557 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.85;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1930,207,0 chrXV 225662 . A G 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=6.511;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.959;QD=23.04;ReadPosRankSum=1.698;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2406,273,0 chrXV 226333 . T G 925 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.72;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:958,105,0 chrXV 226379 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.42;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1482,159,0 chrXV 226710 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:831,87,0 chrXV 226877 . G T 1294 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.03;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1327,141,0 chrXV 227150 . A C 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.024;QD=23.03;ReadPosRankSum=1.685;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1714,195,0 chrXV 227884 . T G 882 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.00;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:915,99,0 chrXV 227885 . C G 919 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.76;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:952,102,0 chrXV 227890 . C T 798 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.98;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:831,93,0 chrXV 227900 . G A 725 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.14;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:758,81,0 chrXV 227914 . T C 286 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.89;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:319,36,0 chrXV 227916 . T G 270 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.00;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:33:303,33,0 chrXV 227926 . T A 163.06 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=10.87;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:21:196,21,0 chrXV 227931 . A C 46.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.76;MQ0=0;QD=3.61;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:79,9,0 chrXV 227937 . A G 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=6.75;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:86,9,0 chrXV 227940 . T C 166.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=12.77;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:24:199,24,0 chrXV 227968 . A T 754 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=18.39;SB=-2.301e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:84:787,84,0 chrXV 228001 . A C 925 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.79;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:958,105,0 chrXV 228231 . C T 644 filter AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=11.50;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,56:56:72:677,72,0 chrXV 228291 . T C 661 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:78:694,78,0 chrXV 228309 . T C 563 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.11;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:66:596,66,0 chrXV 228425 . C A 46.97 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=0;QD=1.34;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,5:35:9:79,9,0 chrXV 229198 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.02;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2235,252,0 chrXV 229235 . A G 2361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.7925;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.486;QD=20.71;ReadPosRankSum=1.702;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2394,264,0 chrXV 229291 . C A 2769 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.47;SB=-1.568e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2802,303,0 chrXV 229674 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.87;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2370,258,0 chrXV 229744 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.88;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1468,159,0 chrXV 229977 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.77;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1970,219,0 chrXV 230045 . C T 243 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=22.2429;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=3.98;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:30:276,30,0 chrXV 230066 . C T 738 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=12.95;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:771,87,0 chrXV 230105 . G T 1542 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.84;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1575,168,0 chrXV 230282 . C T 2840 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.48;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2873,309,0 chrXV 230379 . A G 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.654;DP=93;Dels=0.00;FS=16.799;HaplotypeScore=4.0215;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=2.598;QD=22.74;ReadPosRankSum=3.739;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:5,88:93:99:2148,237,0 chrXV 230453 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.97;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1873,210,0 chrXV 230491 . G A 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.530;DP=91;Dels=0.00;FS=10.021;HaplotypeScore=7.9294;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=1.226;QD=14.49;ReadPosRankSum=4.076;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:8,82:91:99:1352,150,0 chrXV 230492 . A G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.643;DP=91;Dels=0.00;FS=10.021;HaplotypeScore=7.9294;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.659;QD=14.42;ReadPosRankSum=4.090;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:9,82:91:99:1345,150,0 chrXV 230592 . T A 1806 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5636;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.84;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:1839,195,0 chrXV 230614 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=16.41;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1953,207,0 chrXV 230706 . G A 2569 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.6149;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.96;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2602,279,0 chrXV 230792 . A T 1974 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2092;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.18;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2007,219,0 chrXV 230852 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.86;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1891,210,0 chrXV 231231 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.732;QD=18.63;ReadPosRankSum=1.643;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1486,165,0 chrXV 231541 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.89;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1475,159,0 chrXV 231973 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=5.027;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=22.09;ReadPosRankSum=1.633;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1579,180,0 chrXV 232036 . A C 1048 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.29;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1081,117,0 chrXV 232193 . A G 789 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.2072;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.93;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:93:822,93,0 chrXV 232710 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.88;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1657,183,0 chrXV 232797 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.56;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2469,267,0 chrXV 232893 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.47;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1746,186,0 chrXV 233142 . A G 1410 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.85;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1443,159,0 chrXV 233424 . A G 1289 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.96;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1322,147,0 chrXV 233724 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.67;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1583,168,0 chrXV 234020 . T C 720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.280;QD=23.23;ReadPosRankSum=1.621;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,30:31:84:753,84,0 chrXV 234113 . T A 1288 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.14;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1321,141,0 chrXV 234932 . A T 1736 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.67;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1769,189,0 chrXV 235143 . C T 1956 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.7740;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.74;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1989,219,0 chrXV 235233 . A C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.0526;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.270;QD=15.64;ReadPosRankSum=1.694;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1472,162,0 chrXV 235374 . A G 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=85;Dels=0.00;FS=12.985;HaplotypeScore=48.8688;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.140;QD=17.64;ReadPosRankSum=3.409;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1532,151,0 chrXV 235959 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=15.59;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1187,129,0 chrXV 236076 . C T 2644 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.6628;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2677,288,0 chrXV 236826 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7083;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.83;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1823,201,0 chrXV 236985 . A G 788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.093;HaplotypeScore=48.8040;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-0.490;QD=14.87;ReadPosRankSum=1.667;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:93:821,93,0 chrXV 237006 . G A 514 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=53;Dels=0.00;FS=10.962;HaplotypeScore=6.1174;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=2.119;QD=9.70;ReadPosRankSum=1.766;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:4,49:53:57:547,57,0 chrXV 237471 . A C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=2.865;HaplotypeScore=6.3340;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.482;QD=20.29;ReadPosRankSum=2.388;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1636,183,0 chrXV 237769 . G C 887 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.28;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:920,102,0 chrXV 237922 . G A 1357 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.88;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1390,153,0 chrXV 238432 . C T 2240 filter AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2273,243,0 chrXV 238504 . C A 928 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:44:99:961,99,0 chrXV 238507 . T A 767 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.339;QD=17.43;ReadPosRankSum=1.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,43:44:93:800,93,0 chrXV 238554 . T C 845 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:99:878,99,0 chrXV 238584 . G A 1042 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.84;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1075,114,0 chrXV 238753 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.22;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2116,237,0 chrXV 238924 . A C 2085 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.301;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.452;QD=22.66;ReadPosRankSum=1.657;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:2118,216,0 chrXV 238980 . A C 2030 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.71;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2063,228,0 chrXV 239041 . G T 1932 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.23;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1965,213,0 chrXV 239053 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.82;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1888,204,0 chrXV 239353 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.91;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1843,198,0 chrXV 240089 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.18;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1887,213,0 chrXV 240094 . G A 1998 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.50;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2031,219,0 chrXV 240194 . T A 2120 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.82;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2153,234,0 chrXV 240239 . T A 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.658;QD=23.76;ReadPosRankSum=1.695;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:2243,237,0 chrXV 240538 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.04;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1416,150,0 chrXV 241147 . A C 1653 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=6.198;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.299;QD=22.04;ReadPosRankSum=2.384;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1686,186,0 chrXV 241190 . A C 1265 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.186;QD=22.59;ReadPosRankSum=1.670;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1298,147,0 chrXV 241207 . T G 1293 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.09;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1326,147,0 chrXV 241259 . A G 762 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.05;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:795,90,0 chrXV 241442 . C G 757 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:87:790,87,0 chrXV 241632 . A G 1124 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.249;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.7594;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.652;QD=26.14;ReadPosRankSum=1.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1157,126,0 chrXV 241704 . A G 522 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.73;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:555,60,0 chrXV 242267 . T C 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=2.975;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.964;QD=22.00;ReadPosRankSum=2.334;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2365,264,0 chrXV 242366 . G A 3312.01 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.32;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3312,351,0 chrXV 242598 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0190;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=14.01;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1000,108,0 chrXV 242641 . C G 554 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=11.54;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:66:587,66,0 chrXV 242786 . C T 1077 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.23;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1110,117,0 chrXV 243211 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:842,96,0 chrXV 243303 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0688;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.575;QD=22.33;ReadPosRankSum=1.680;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1529,168,0 chrXV 243335 . C G 1271 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.54;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1304,144,0 chrXV 243874 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1409,153,0 chrXV 244018 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.43;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1375,153,0 chrXV 244031 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.57;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1456,159,0 chrXV 244324 . T A 996 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.13;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1029,114,0 chrXV 244393 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.43;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1160,123,0 chrXV 244803 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.20;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1528,171,0 chrXV 245195 . G A 1821 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.69;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1854,195,0 chrXV 245647 . A T 1321 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6577;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.35;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1354,147,0 chrXV 245875 . G C 1282 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.37;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1315,147,0 chrXV 245956 . G A 1226 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.14;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1259,138,0 chrXV 246022 . T C 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=2.698;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.927;QD=22.77;ReadPosRankSum=2.368;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1399,153,0 chrXV 246679 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.89;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1959,207,0 chrXV 247102 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=14.9641;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.82;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1844,204,0 chrXV 247462 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.86;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1153,126,0 chrXV 247746 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1658,177,0 chrXV 247923 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.73;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1988,222,0 chrXV 248073 . A G 1656 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1689,189,0 chrXV 248196 . G C 1943 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.35;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1976,219,0 chrXV 248262 . C T 2627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.0445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.288;QD=22.45;ReadPosRankSum=1.584;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2660,288,0 chrXV 248365 . C G 2438 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.58;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2471,273,0 chrXV 248406 . G A 2127 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.48;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2160,243,0 chrXV 248998 . G A 1740 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1773,198,0 chrXV 249478 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.39;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1664,180,0 chrXV 249588 . C T 1795 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.01;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1828,198,0 chrXV 249830 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1843;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.915;QD=21.29;ReadPosRankSum=1.693;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1928,216,0 chrXV 250259 . G A 2369 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.34;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2402,264,0 chrXV 250322 . T C 2113 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.34;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2146,243,0 chrXV 250527 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.33;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1923,207,0 chrXV 250953 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=16.63;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1546,168,0 chrXV 251092 . A G 2105 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.636;QD=21.26;ReadPosRankSum=1.697;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2138,240,0 chrXV 251194 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.52;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1656,177,0 chrXV 251243 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.60;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1614,180,0 chrXV 251291 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.40;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1624,180,0 chrXV 251408 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.36;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1400,147,0 chrXV 252485 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.47;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:972,108,0 chrXV 252563 . G T 1555 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.51;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1588,171,0 chrXV 253006 . T C 824 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.53;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:96:857,96,0 chrXV 253929 . C A 1191 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4184;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.61;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1224,138,0 chrXV 253930 . A C 1180 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.44;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1213,138,0 chrXV 253966 . A C 1209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.321;QD=20.49;ReadPosRankSum=1.674;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1242,138,0 chrXV 254016 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.40;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1274,138,0 chrXV 254194 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.18;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1365,144,0 chrXV 254203 . T A 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=4.082;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.704;QD=18.97;ReadPosRankSum=1.678;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1266,138,0 chrXV 254857 . C G 750 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.06;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:87:783,87,0 chrXV 254962 . T C 543 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.103;QD=24.68;ReadPosRankSum=1.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:63:576,63,0 chrXV 255018 . T C 490 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-1.040;QD=16.33;ReadPosRankSum=1.502;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:1,29:30:57:523,57,0 chrXV 255031 . T C 607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.102;QD=17.85;ReadPosRankSum=1.631;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:72:640,72,0 chrXV 255070 . A G 601 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=13.07;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:69:634,69,0 chrXV 255071 . T C 640 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=13.33;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:75:673,75,0 chrXV 255091 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=16.14;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:937,99,0 chrXV 255163 . G A 1375 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.83;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,153,0 chrXV 255181 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.70;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,183,0 chrXV 255268 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.16;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1705,198,0 chrXV 255588 . T C 2386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=121;Dels=0.00;FS=9.370;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.188;QD=19.72;ReadPosRankSum=2.906;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:3,115:121:99:2419,267,0 chrXV 256322 . A C 681 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=13.62;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:714,81,0 chrXV 256324 . T C 686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.297;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;MQRankSum=-0.700;QD=14.60;ReadPosRankSum=1.659;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:81:719,81,0 chrXV 256343 . T C 746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=54;Dels=0.00;FS=5.975;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=0.076;QD=13.81;ReadPosRankSum=2.870;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:87:779,87,0 chrXV 256395 . C T 1327 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.96;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1360,144,0 chrXV 256446 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4934;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.38;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1293,141,0 chrXV 256457 . A G 951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=55;Dels=0.00;FS=8.081;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.012;QD=17.29;ReadPosRankSum=2.316;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:984,111,0 chrXV 256963 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.9942;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.35;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1833,198,0 chrXV 257252 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.48;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1082,120,0 chrXV 257356 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=16.32;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1681,183,0 chrXV 257374 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.04;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1717,189,0 chrXV 257554 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.15;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1148,126,0 chrXV 257615 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.08;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1645,180,0 chrXV 257719 . T C 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.699;QD=21.60;ReadPosRankSum=1.672;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1264,141,0 chrXV 257954 . T C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.334;QD=20.70;ReadPosRankSum=1.700;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2289,252,0 chrXV 257986 . A G 1871 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.09;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1904,213,0 chrXV 258043 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.37;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1721,189,0 chrXV 258304 . A T 2042 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.02;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2075,222,0 chrXV 258539 . G C 2266 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.05;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2299,255,0 chrXV 258574 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.51;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2199,246,0 chrXV 258913 . A G 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;MQRankSum=0.775;QD=22.64;ReadPosRankSum=1.633;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2410,270,0 chrXV 259138 . T G 2745 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=18.0932;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.47;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,137:141:99:2778,312,0 chrXV 259315 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.85;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1462,156,0 chrXV 259644 . T G 2297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-1.134;QD=20.69;ReadPosRankSum=1.701;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2330,264,0 chrXV 259706 . A G 2498 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.35;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2531,282,0 chrXV 259721 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.08;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2526,267,0 chrXV 259779 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.60;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1640,183,0 chrXV 259967 . T C 2243 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.43;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2276,252,0 chrXV 260102 . T A 1322 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.36;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1355,150,0 chrXV 260340 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.78;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1492,165,0 chrXV 260366 . G A 1658 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.82;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1691,186,0 chrXV 260399 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.82;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1843,195,0 chrXV 260576 . A G 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=59;Dels=0.00;FS=10.970;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.259;QD=23.15;ReadPosRankSum=2.881;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:3,56:59:99:1399,153,0 chrXV 260613 . T G 1383 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1416,159,0 chrXV 260759 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.353;QD=19.53;ReadPosRankSum=1.685;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1459,143,0 chrXV 260837 . A G 1430 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.379;QD=22.34;ReadPosRankSum=1.678;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1463,165,0 chrXV 260864 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.51;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1325,147,0 chrXV 260906 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.07;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1063,120,0 chrXV 261263 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4292;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1448,162,0 chrXV 261556 . C A 2130 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.19;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2163,231,0 chrXV 261583 . G A 1974 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.56;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2007,216,0 chrXV 261665 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.60;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1516,168,0 chrXV 262190 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.75;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1967,213,0 chrXV 262868 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.90;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2071,231,0 chrXV 263183 . T C 1108 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=16.06;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1141,126,0 chrXV 263193 . T A 1205 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=17.21;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1238,132,0 chrXV 263431 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.10;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2250,255,0 chrXV 263881 . A T 2003 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.29;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2036,219,0 chrXV 263894 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.48;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1880,207,0 chrXV 264752 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1518,168,0 chrXV 264888 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.58;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1371,144,0 chrXV 264924 . A C 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.552;DP=64;Dels=0.00;FS=4.125;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.025;QD=18.66;ReadPosRankSum=3.377;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:5,59:64:99:1227,138,0 chrXV 264971 . T G 1210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.505;QD=19.52;ReadPosRankSum=1.392;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1243,138,0 chrXV 265043 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.78;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1457,165,0 chrXV 265232 . T A 1403 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.27;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1436,153,0 chrXV 265602 . C T 2457 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.54;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2490,267,0 chrXV 265983 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.85;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1930,210,0 chrXV 266897 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.60;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1480,159,0 chrXV 266963 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.85;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1390,147,0 chrXV 266966 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.55;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1424,153,0 chrXV 267104 . A G 1841 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.506;QD=19.80;ReadPosRankSum=1.619;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1874,207,0 chrXV 267165 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.38;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2137,228,0 chrXV 267212 . A G 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=4.823;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.488;QD=21.81;ReadPosRankSum=1.691;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,84:86:99:1909,213,0 chrXV 267365 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.80;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1468,162,0 chrXV 267515 . A G 1773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.433;QD=16.89;ReadPosRankSum=1.699;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1806,198,0 chrXV 267577 . G A 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.695;QD=21.09;ReadPosRankSum=-0.332;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2015,213,0 chrXV 267689 . A G 1580 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1613,180,0 chrXV 267756 . G A 1003 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=16.44;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1036,111,0 chrXV 267906 . G C 1161 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.07;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1194,135,0 chrXV 267912 . T C 1176 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=68;Dels=0.00;FS=8.675;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.087;QD=17.29;ReadPosRankSum=2.376;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,65:68:99:1209,132,0 chrXV 267950 . T C 1005 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.95;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1038,114,0 chrXV 268134 . G A 1632 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=25.50;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1665,174,0 chrXV 268222 . A G 2182 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.98;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2215,249,0 chrXV 268330 . C T 2002 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.72;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2035,216,0 chrXV 268456 . T C 2817 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.3657;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.47;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2850,315,0 chrXV 269458 . A G 99.26 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=2.48;SB=-3.573e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:15:132,15,0 chrXV 269468 . A G 130.13 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=2.96;SB=-3.811e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:18:163,18,0 chrXV 269591 . A G 766 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.138;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.676;QD=12.35;ReadPosRankSum=3.195;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:4,58:62:90:799,90,0 chrXV 269647 . C T 978 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=13.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1011,120,0 chrXV 269686 . T C 1065 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1098,126,0 chrXV 269696 . T A 1061 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=17.98;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1094,120,0 chrXV 269941 . C T 824 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.3275;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:93:857,93,0 chrXV 270070 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.78;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1626,183,0 chrXV 270102 . T G 2036 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.88;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2069,228,0 chrXV 270370 . T C 2395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.414;QD=21.97;ReadPosRankSum=1.669;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2428,267,0 chrXV 270435 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.063;QD=21.11;ReadPosRankSum=1.653;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1891,210,0 chrXV 270526 . C G 1413 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.19;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1446,159,0 chrXV 270687 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=12.5772;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.23;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1860,210,0 chrXV 270735 . T C 2085 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.85;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2118,240,0 chrXV 271045 . T C 2517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.420;QD=18.78;ReadPosRankSum=1.706;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:1,132:134:99:2550,279,0 chrXV 271365 . T A 2371 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.43;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2404,252,0 chrXV 271388 . C T 1979 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.83;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,107:111:99:2012,219,0 chrXV 271727 . G A 905 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.21;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:938,99,0 chrXV 271758 . T C 867 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.70;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:900,102,0 chrXV 271822 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=13.96;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:968,108,0 chrXV 271895 . G C 1112 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.38;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1145,129,0 chrXV 271928 . T C 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-0.405;QD=15.64;ReadPosRankSum=1.659;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:87:768,87,0 chrXV 271964 . T C 16.85 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.157;DP=49;Dels=0.00;FS=2.719;HaplotypeScore=42.1961;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=-1.290;QD=0.34;ReadPosRankSum=-4.938;SB=-7.676e+01 GT:AD:DP:GQ:PL 1/1:33,15:49:6:48,6,0 chrXV 271973 . T C 38.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=37.4530;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=0;MQRankSum=0.755;QD=0.72;ReadPosRankSum=-1.327;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:29,23:53:64:68,0,64 chrXV 271974 . T C 100.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.901;DP=52;Dels=0.00;FS=1.188;HaplotypeScore=37.4530;MLEAC=2;MLEAF=1.00;MQ=34.82;MQ0=0;MQRankSum=-0.332;QD=1.93;ReadPosRankSum=-4.623;SB=-2.173e+02 GT:AD:DP:GQ:PL 1/1:17,35:52:15:133,15,0 chrXV 272022 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=16.50;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1254,138,0 chrXV 272042 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.67;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1284,138,0 chrXV 272201 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.33;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1931,213,0 chrXV 272231 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.27;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1594,174,0 chrXV 272255 . G C 1347 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.45;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1380,153,0 chrXV 272275 . T C 1022 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=15.25;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1055,120,0 chrXV 272365 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=18.32;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1425,159,0 chrXV 272573 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.0236;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.28;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1843,210,0 chrXV 272726 . A G 1111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.039;QD=20.96;ReadPosRankSum=1.663;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:1,49:53:99:1144,126,0 chrXV 273461 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.55;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1719,180,0 chrXV 273775 . G C 2240 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.93;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2273,246,0 chrXV 273936 . G T 1388 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=16.4666;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.42;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1421,153,0 chrXV 274354 . A C 2103 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.45;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2136,237,0 chrXV 274550 . T G 1673 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=105;Dels=0.00;FS=4.688;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;MQRankSum=1.429;QD=15.93;ReadPosRankSum=1.665;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:1706,192,0 chrXV 274562 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=13.77;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1506,168,0 chrXV 274565 . A G 1442 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=13.87;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1475,165,0 chrXV 274586 . A G 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;DP=98;Dels=0.00;FS=6.247;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=-0.239;QD=11.22;ReadPosRankSum=0.264;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:1133,100,0 chrXV 274592 . T C 1158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=-1.627;QD=11.70;ReadPosRankSum=1.697;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1191,132,0 chrXV 274608 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=10.55;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1193,132,0 chrXV 274614 . T A 1244 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.98;MQ0=0;MQRankSum=-0.969;QD=11.41;ReadPosRankSum=1.700;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:1277,141,0 chrXV 274651 . G C 1625 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.09;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1658,183,0 chrXV 274809 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.70;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2082,222,0 chrXV 274962 . C T 2624 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.1885;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.69;SB=-1.555e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2657,282,0 chrXV 275073 . T C 2000 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.99;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2033,222,0 chrXV 275863 . A T 2340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=4.771;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.315;QD=21.47;ReadPosRankSum=1.700;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2373,252,0 chrXV 276471 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1600,180,0 chrXV 276679 . T C 2183 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.99;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2216,246,0 chrXV 276774 . C G 1369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.84;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1402,156,0 chrXV 277027 . T C 1732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0259;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=-0.787;QD=19.46;ReadPosRankSum=1.653;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1765,198,0 chrXV 277036 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.42;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1871,201,0 chrXV 277085 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.07;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1799,189,0 chrXV 277467 . C G 614 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4131;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.47;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:647,72,0 chrXV 277667 . C T 699 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=18.89;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:732,78,0 chrXV 277668 . A T 727 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=19.65;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:760,81,0 chrXV 277673 . A G 699 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=5.268;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=-1.171;QD=18.89;ReadPosRankSum=1.639;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:81:732,81,0 chrXV 277693 . G C 507 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.92;MQ0=0;QD=13.70;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:60:540,60,0 chrXV 277699 . C A 523 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=13.76;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:556,60,0 chrXV 277705 . T C 521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=2.746;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;MQRankSum=-1.735;QD=11.58;ReadPosRankSum=2.341;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,43:45:63:554,63,0 chrXV 277819 . T A 974 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3846;MLEAC=2;MLEAF=1.00;MQ=63.35;MQ0=0;QD=22.14;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1007,111,0 chrXV 277905 . T C 740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.630;QD=16.82;ReadPosRankSum=1.654;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:87:773,87,0 chrXV 277941 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.69;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1523,162,0 chrXV 278142 . G A 879 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.70;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:912,99,0 chrXV 278256 . T C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.433;QD=19.37;ReadPosRankSum=1.684;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1428,159,0 chrXV 278259 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.6605;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.40;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1488,162,0 chrXV 278268 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7385;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.70;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1730,189,0 chrXV 278901 . A G 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;DP=68;Dels=0.00;FS=2.795;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.054;QD=21.99;ReadPosRankSum=0.672;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1528,152,0 chrXV 279324 . T C 1780 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.53;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1813,201,0 chrXV 279501 . A G 1915 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.80;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1948,222,0 chrXV 279807 . T C 1725 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.17;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1758,195,0 chrXV 279819 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.41;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1931,204,0 chrXV 279839 . G A 1756 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.29;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1789,192,0 chrXV 279942 . T A 1271 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.54;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1304,138,0 chrXV 280108 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.63;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1309,141,0 chrXV 280147 . G A 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.43;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1897,201,0 chrXV 280341 . A G 742 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.26;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:775,87,0 chrXV 280347 . G A 748 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=15.27;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:781,87,0 chrXV 280395 . G A 882 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.21;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:915,99,0 chrXV 280401 . G A 893 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=14.88;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:926,99,0 chrXV 280497 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.11;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1371,153,0 chrXV 280524 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.83;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1389,147,0 chrXV 280587 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.51;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1162,129,0 chrXV 280789 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.03;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1259,138,0 chrXV 281271 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.49;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1513,159,0 chrXV 281328 . G A 1148 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.14;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1181,129,0 chrXV 281493 . G A 1178 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.58;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1211,135,0 chrXV 281614 . C G 1556 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.22;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1589,174,0 chrXV 281671 . C G 1771 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.84;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1804,204,0 chrXV 281680 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.98;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1771,192,0 chrXV 281784 . G C 1238 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.65;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1271,138,0 chrXV 281820 . G C 842 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=7.8218;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.51;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:875,99,0 chrXV 281915 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.75;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1423,150,0 chrXV 281945 . A C 2314 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.7983;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.515;QD=20.48;ReadPosRankSum=1.638;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,110:112:99:2347,264,0 chrXV 282038 . A G 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=7.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=0.983;QD=16.64;ReadPosRankSum=2.317;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1264,144,0 chrXV 282044 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.07;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1399,144,0 chrXV 282101 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.17;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1003,111,0 chrXV 283690 . C A 2016 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.78;SB=-1.289e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2049,219,0 chrXV 283744 . G A 1888 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.5736;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.359;QD=18.15;ReadPosRankSum=1.528;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1921,204,0 chrXV 284521 . A T 1490 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7689;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.69;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1523,168,0 chrXV 284599 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8447;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.28;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1481,165,0 chrXV 284911 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.57;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2255,243,0 chrXV 284917 . G A 2095 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.14;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2128,228,0 chrXV 284983 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1859;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.06;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,107:110:99:1910,210,0 chrXV 285268 . G A 1745 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.63;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1778,198,0 chrXV 285417 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.06;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2164,231,0 chrXV 285590 . A G 1803 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=78.4334;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.81;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1836,204,0 chrXV 286242 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.5235;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.07;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1710,180,0 chrXV 286319 . A C 1709 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.59;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1742,195,0 chrXV 286370 . T C 1898 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.37;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1931,213,0 chrXV 286630 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8294;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.24;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1688,180,0 chrXV 287386 . A G 1726 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.55;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1759,198,0 chrXV 288002 . C T 646 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.19;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:72:679,72,0 chrXV 288095 . T C 319 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=10.63;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:39:352,39,0 chrXV 288104 . T C 288 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=12.52;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:36:321,36,0 chrXV 288161 . C G 107.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=6.70;SB=-2.685e-01 GT:AD:DP:GQ:PL 1/1:0,15:16:15:140,15,0 chrXV 288164 . C T 134.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=6.10;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,21:22:18:167,18,0 chrXV 288310 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.26;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:87:781,87,0 chrXV 288781 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.44;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1433,156,0 chrXV 288918 . A G 1137 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.74;SB=-1.650e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1170,135,0 chrXV 289302 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.75;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1791,204,0 chrXV 289317 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=18.89;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1714,183,0 chrXV 289335 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.83;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,90:94:99:1615,180,0 chrXV 289536 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.45;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1642,180,0 chrXV 289728 . T C 2116 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=100;Dels=0.00;FS=2.881;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.194;QD=21.16;ReadPosRankSum=2.351;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2149,237,0 chrXV 289797 . C A 1955 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.47;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1988,216,0 chrXV 290259 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=11.51;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1126,126,0 chrXV 290268 . G C 1160 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=11.60;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1193,132,0 chrXV 290681 . T C 1190 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.83;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1223,135,0 chrXV 290723 . T A 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.493;QD=19.36;ReadPosRankSum=1.613;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1737,192,0 chrXV 290822 . T G 2814 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.68;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2847,315,0 chrXV 290902 . A T 1641 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.51;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1674,177,0 chrXV 290908 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.01;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1456,153,0 chrXV 290923 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6952;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=15.60;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1156,129,0 chrXV 291010 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.60;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1908,216,0 chrXV 291394 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1880;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.337;QD=16.79;ReadPosRankSum=1.642;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1326,147,0 chrXV 291873 . A G 2060 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4378;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.91;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2093,237,0 chrXV 291910 . A G 2210 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.643;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.558;QD=18.42;ReadPosRankSum=1.644;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2243,255,0 chrXV 292076 . T C 1918 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9820;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.40;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1951,216,0 chrXV 292117 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.58;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2043,222,0 chrXV 292132 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.70;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1875,198,0 chrXV 292307 . T A 2082 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.76;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2115,228,0 chrXV 292448 . A C 1812 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.53;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1845,201,0 chrXV 292493 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2709;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.29;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1970,216,0 chrXV 292642 . C G 1365 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.33;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1398,159,0 chrXV 292744 . A T 1838 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.62;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1871,207,0 chrXV 292883 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.96;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2119,237,0 chrXV 293132 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.40;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1321,147,0 chrXV 293200 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.33;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1497,165,0 chrXV 293263 . G T 972 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.13;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1005,108,0 chrXV 294178 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.74;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2066,225,0 chrXV 294216 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.56;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2007,213,0 chrXV 294323 . C G 1509 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.39;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1542,177,0 chrXV 294330 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.49;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1611,171,0 chrXV 294347 . C A 1437 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.42;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1470,168,0 chrXV 294382 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.14;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1276,147,0 chrXV 294448 . T G 1595 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.71;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1628,183,0 chrXV 294529 . T C 1235 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.69;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:74:99:1268,144,0 chrXV 294547 . C T 1189 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=15.05;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1222,135,0 chrXV 294553 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=15.40;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1219,132,0 chrXV 294636 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.35;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2125,234,0 chrXV 294699 . T C 2243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=2.165;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.143;QD=21.16;ReadPosRankSum=2.934;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:3,103:106:99:2276,255,0 chrXV 294723 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.50;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1968,219,0 chrXV 294840 . A G 1083 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.69;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1116,129,0 chrXV 294882 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.97;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1456,165,0 chrXV 295077 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.16;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2190,234,0 chrXV 295275 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=14.87;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1059,117,0 chrXV 295276 . A G 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.815;QD=14.83;ReadPosRankSum=1.681;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1056,117,0 chrXV 295611 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.31;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2409,258,0 chrXV 295998 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.1595;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.32;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1384,150,0 chrXV 296577 . A C 2381 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.257;QD=23.34;ReadPosRankSum=1.698;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2414,267,0 chrXV 296786 . A G 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=7.568;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.573;QD=19.51;ReadPosRankSum=2.381;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1418,162,0 chrXV 296804 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.260;QD=19.89;ReadPosRankSum=1.680;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1346,144,0 chrXV 296955 . C T 2145 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.24;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2178,231,0 chrXV 296973 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.78;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1817,198,0 chrXV 296990 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.99;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1579,174,0 chrXV 297046 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.91;SB=-1.540e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2354,246,0 chrXV 297073 . C T 2118 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.43;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2151,234,0 chrXV 297107 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.92;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1607,171,0 chrXV 297302 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.29;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1108,123,0 chrXV 297330 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.92;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1267,135,0 chrXV 297467 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.36;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1392,150,0 chrXV 297608 . G A 973 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.27;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1006,114,0 chrXV 297818 . A G 912 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:945,105,0 chrXV 297977 . C T 1564 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.23;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1597,171,0 chrXV 298234 . A G 1962 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1995,222,0 chrXV 298279 . A G 1835 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1868,207,0 chrXV 298337 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.3473;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.08;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1178,129,0 chrXV 298532 . A T 2349 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.35;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2382,261,0 chrXV 298878 . G T 878 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.88;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:96:911,96,0 chrXV 298882 . A G 835 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=15.75;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:96:868,96,0 chrXV 299032 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=55.0910;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.63;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1188,123,0 chrXV 299136 . A G 925 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.393;QD=22.56;ReadPosRankSum=2.330;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:99:958,105,0 chrXV 299731 . G T 1393 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.35;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1426,156,0 chrXV 299792 . A G 1022 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=16.75;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1055,120,0 chrXV 299793 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=18.11;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1138,120,0 chrXV 299839 . A G 992 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=14.17;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1025,114,0 chrXV 299855 . G A 806 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=11.68;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:93:839,93,0 chrXV 299862 . C A 719 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=11.23;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:81:752,81,0 chrXV 299885 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=15.85;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1158,123,0 chrXV 299926 . T C 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.909;QD=16.66;ReadPosRankSum=1.689;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1366,153,0 chrXV 300129 . A T 2267 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=21.59;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2300,249,0 chrXV 300156 . A C 1712 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=-0.322;QD=19.45;ReadPosRankSum=1.652;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1745,195,0 chrXV 300301 . G T 1743 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.88;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1776,189,0 chrXV 300388 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.61;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1395,150,0 chrXV 300404 . G A 1489 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.73;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1522,165,0 chrXV 300495 . C T 1388 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.72;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:67:99:1421,150,0 chrXV 300670 . A G 1535 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.337;QD=21.32;ReadPosRankSum=1.684;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1568,174,0 chrXV 300690 . A T 1180 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=19.67;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1213,129,0 chrXV 300708 . A G 1176 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.28;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1209,132,0 chrXV 300865 . T C 3521.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.732;QD=24.12;ReadPosRankSum=1.708;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,145:146:99:3521,381,0 chrXV 300887 . C T 3589.01 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=22.29;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3589,384,0 chrXV 300895 . T A 3485.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-0.217;QD=21.78;ReadPosRankSum=1.689;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,159:160:99:3485,372,0 chrXV 301024 . A G 1411 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=70;Dels=0.00;FS=3.016;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=1.428;QD=20.16;ReadPosRankSum=2.380;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1444,159,0 chrXV 301075 . T G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=0.367;QD=18.47;ReadPosRankSum=0.735;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1252,141,0 chrXV 301083 . T C 1310 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.99;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1343,147,0 chrXV 301153 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=17.39;SB=-1.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1372,150,0 chrXV 301621 . C G 1314 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.22;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1347,153,0 chrXV 301631 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.02;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1399,153,0 chrXV 302017 . T C 2782 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=2.982;HaplotypeScore=9.2415;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.561;QD=22.08;ReadPosRankSum=2.391;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2815,315,0 chrXV 302184 . T C 2453 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.347e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2486,282,0 chrXV 302514 . T C 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.227;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.394;QD=20.71;ReadPosRankSum=1.690;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1752,195,0 chrXV 302844 . T C 1517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4839;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.577;QD=19.20;ReadPosRankSum=0.622;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1550,152,0 chrXV 302883 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4252;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=18.95;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1170,129,0 chrXV 303066 . A T 1258 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=19.97;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1291,135,0 chrXV 303067 . C T 1193 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.64;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1226,135,0 chrXV 303101 . A G 1268 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.13;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1301,141,0 chrXV 303785 . A G 1423 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.62;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1456,159,0 chrXV 303924 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.20;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1307,144,0 chrXV 303991 . A T 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.847;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.8941;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.690;QD=16.64;ReadPosRankSum=2.004;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:2,98:100:99:1697,163,0 chrXV 304204 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.29;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1248,144,0 chrXV 304242 . T C 958 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.16;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:991,111,0 chrXV 304263 . T C 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.144;QD=19.33;ReadPosRankSum=1.588;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:961,105,0 chrXV 304796 . T C 910 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:943,105,0 chrXV 305375 . T C 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.742;QD=21.98;ReadPosRankSum=1.701;SB=-1.375e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2495,273,0 chrXV 305531 . G A 2176 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.29;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2209,246,0 chrXV 305540 . G A 2202 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.15;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2235,237,0 chrXV 305753 . T C 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.988;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.127;QD=20.46;ReadPosRankSum=1.690;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1711,192,0 chrXV 306086 . C T 1073 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.16;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1106,117,0 chrXV 306087 . C T 1090 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.82;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1123,120,0 chrXV 306089 . G A 1019 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.23;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1052,120,0 chrXV 306464 . A G 2550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=115;Dels=0.00;FS=4.441;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.276;QD=22.17;ReadPosRankSum=1.641;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,113:115:99:2583,285,0 chrXV 306699 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.34;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1925,216,0 chrXV 307004 . T C 1882 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5753;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.91;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1915,216,0 chrXV 307049 . A G 1745 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=18.97;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1778,201,0 chrXV 307058 . G A 1612 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=18.11;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1645,177,0 chrXV 307067 . T A 1451 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=18.37;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1484,159,0 chrXV 307097 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=15.43;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1283,141,0 chrXV 307380 . A G 1134 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=16.68;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1167,129,0 chrXV 307849 . A T 1185 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.1438;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.24;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1218,132,0 chrXV 308212 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.75;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1610,171,0 chrXV 308309 . T C 2119 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.787;QD=23.81;ReadPosRankSum=1.693;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:2152,237,0 chrXV 308513 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.27;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2260,246,0 chrXV 308969 . G A 638 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=16.79;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:72:671,72,0 chrXV 309144 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.59;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1115,123,0 chrXV 309237 . A G 748 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.18;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:781,87,0 chrXV 309334 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.39;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1881,198,0 chrXV 309719 . G A 2225 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2258,240,0 chrXV 309833 . G C 1440 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.20;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:75:99:1473,162,0 chrXV 309859 . T C 1156 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.65;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1189,132,0 chrXV 309869 . T C 1178 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.680;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.742;QD=16.83;ReadPosRankSum=1.683;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1211,135,0 chrXV 310257 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.27;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1330,144,0 chrXV 310258 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=4.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.029;QD=19.95;ReadPosRankSum=1.678;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1330,144,0 chrXV 310348 . T G 1464 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1497,165,0 chrXV 311157 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.11;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2067,228,0 chrXV 311450 . G T 1850 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.56;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1883,207,0 chrXV 311489 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.91;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2044,225,0 chrXV 312065 . A G 2247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.312;QD=22.03;ReadPosRankSum=1.663;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,99:102:99:2280,255,0 chrXV 312171 . T C 2899 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.6464;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.16;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2932,321,0 chrXV 312272 . G T 2264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;DP=117;Dels=0.00;FS=5.166;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.250;QD=19.35;ReadPosRankSum=1.551;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2297,246,0 chrXV 312454 . A G 1980 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.20;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2013,222,0 chrXV 312534 . T C 2664 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.31;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2697,303,0 chrXV 312919 . A G 2081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.999;QD=20.01;ReadPosRankSum=1.699;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2114,231,0 chrXV 313126 . T C 608 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:641,72,0 chrXV 313618 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.51;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1474,162,0 chrXV 313924 . T G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=63;Dels=0.00;FS=3.468;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.808;QD=20.73;ReadPosRankSum=1.675;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,59:63:99:1339,150,0 chrXV 313945 . T C 1402 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.93;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1435,165,0 chrXV 314041 . A G 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=3.522;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.706;QD=15.72;ReadPosRankSum=1.668;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:882,99,0 chrXV 314050 . T C 876 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=15.64;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:909,99,0 chrXV 314073 . G T 881 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=14.93;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:914,99,0 chrXV 314395 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.24;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1323,147,0 chrXV 314514 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.35;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1523,162,0 chrXV 314929 . A G 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=67;Dels=0.00;FS=3.068;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.971;QD=18.91;ReadPosRankSum=2.376;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1300,147,0 chrXV 315031 . C T 183.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.753;DP=97;Dels=0.00;FS=4.576;HaplotypeScore=144.8831;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-1.035;QD=1.89;ReadPosRankSum=-6.128;SB=-7.303e+01 GT:AD:DP:GQ:PL 1/1:71,26:97:24:216,24,0 chrXV 315191 . G C 1467 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.56;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1500,165,0 chrXV 315627 . T A 327.98 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;DP=34;Dels=0.00;FS=9.999;HaplotypeScore=29.1111;MLEAC=1;MLEAF=0.500;MQ=47.97;MQ0=0;MQRankSum=-0.061;QD=9.65;ReadPosRankSum=2.091;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:8,26:34:3:357,0,3 chrXV 315691 . A G 607 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.34;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:640,72,0 chrXV 316008 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.7152;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=20.90;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1350,150,0 chrXV 316044 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=21.03;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1505,159,0 chrXV 316312 . C A 742 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=14.27;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:775,84,0 chrXV 316327 . A C 812 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5810;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=14.76;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:96:845,96,0 chrXV 316342 . T C 803 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=14.34;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:836,93,0 chrXV 316361 . T A 802 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.58;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:835,93,0 chrXV 316431 . T A 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=69;Dels=0.00;FS=25.983;HaplotypeScore=195.0568;MLEAC=1;MLEAF=0.500;MQ=36.67;MQ0=0;MQRankSum=0.328;QD=0.61;ReadPosRankSum=-3.667;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,7:69:72:72,0,103 chrXV 316444 . T A 185.03 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=2.80;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:24:218,24,0 chrXV 316591 . A T 1317 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.24;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1350,150,0 chrXV 316611 . A G 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=4.960;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.290;QD=19.35;ReadPosRankSum=1.659;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:962,105,0 chrXV 317483 . T C 687 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=13.21;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:720,81,0 chrXV 317789 . A T 1158 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.97;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1191,126,0 chrXV 317798 . C T 953 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.72;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:986,105,0 chrXV 317858 . T C 1097 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.214;QD=19.59;ReadPosRankSum=2.362;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1130,126,0 chrXV 318136 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.03;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1444,153,0 chrXV 318512 . G A 2739 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0546;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.40;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2772,303,0 chrXV 318668 . C G 2597 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=18.82;SB=-1.696e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2630,291,0 chrXV 319505 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1613,168,0 chrXV 319628 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.58;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:973,102,0 chrXV 320015 . C G 1748 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.62;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1781,198,0 chrXV 320174 . T G 1189 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.31;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1222,132,0 chrXV 320437 . G A 2634 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.90;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2667,285,0 chrXV 320726 . G A 2076 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8543;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.16;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2109,228,0 chrXV 320822 . C A 2309 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.58;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2342,249,0 chrXV 321352 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.88;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1198,132,0 chrXV 321368 . A C 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=76;Dels=0.00;FS=3.129;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.170;QD=17.79;ReadPosRankSum=1.685;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1385,156,0 chrXV 321655 . C G 2263 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8980;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.35;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,104:106:99:2296,255,0 chrXV 321766 . C T 2357 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.34;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2390,258,0 chrXV 321972 . T C 1123 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=15.82;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1156,129,0 chrXV 322108 . C T 2058 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.6415;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.18;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2091,219,0 chrXV 322138 . G T 2396 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.83;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2429,261,0 chrXV 322263 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.32;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1772,189,0 chrXV 322741 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.9379;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.08;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,86:89:99:1820,192,0 chrXV 322819 . C T 2055 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.97;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2088,231,0 chrXV 323130 . A G 1577 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=81;Dels=0.00;FS=2.891;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.385;QD=19.47;ReadPosRankSum=1.094;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1610,160,0 chrXV 323293 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-1.218;QD=15.76;ReadPosRankSum=2.215;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1357,153,0 chrXV 323295 . T C 1459 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.79;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1492,165,0 chrXV 323335 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.04;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1556,165,0 chrXV 323522 . A C 993 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.13;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1026,114,0 chrXV 323543 . T C 934 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.46;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:967,108,0 chrXV 323567 . A G 790 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.56;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:823,93,0 chrXV 323605 . G A 895 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.46;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:928,99,0 chrXV 323620 . A G 944 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.15;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:977,108,0 chrXV 323974 . A G 989 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.60;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1022,114,0 chrXV 324302 . T G 778 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:811,90,0 chrXV 325269 . A C 1310 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.98;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1343,147,0 chrXV 325359 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.6866;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.42;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1626,186,0 chrXV 325987 . C T 976 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.77;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1009,105,0 chrXV 326267 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=23.55;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1493,165,0 chrXV 326369 . A G 401 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=22.28;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:434,48,0 chrXV 326371 . A C 382 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=21.22;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:45:415,45,0 chrXV 326393 . A G 321 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=22.93;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:354,39,0 chrXV 326413 . A G 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=13.46;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:181,21,0 chrXV 326418 . T C 156.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=14.19;SB=-7.062e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:189,21,0 chrXV 326423 . G A 190.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=15.84;SB=-3.878e-02 GT:AD:DP:GQ:PL 1/1:0,12:12:24:223,24,0 chrXV 326558 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=25.25;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1371,141,0 chrXV 326567 . A C 1182 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=23.18;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1215,132,0 chrXV 326583 . T A 1106 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=23.53;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1139,120,0 chrXV 326619 . A T 183.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.917;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=-2.282;QD=11.44;ReadPosRankSum=1.917;SB=-2.840e+01 GT:AD:DP:GQ:PL 1/1:2,14:16:24:216,24,0 chrXV 326623 . C A 159.06 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=12.24;SB=-2.506e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:21:192,21,0 chrXV 326670 . C T 60.51 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=20.6728;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=2.52;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,23:24:12:93,12,0 chrXV 326915 . A G 460 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=16.43;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:57:493,57,0 chrXV 326918 . C G 534 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=19.07;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:63:567,63,0 chrXV 327002 . C T 1012 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=17.45;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1045,111,0 chrXV 327020 . T C 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.506;QD=18.71;ReadPosRankSum=1.626;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1249,135,0 chrXV 327197 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=10.7078;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.36;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1214,138,0 chrXV 327917 . T C 1528 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.6845;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1561,171,0 chrXV 328029 . A C 2485 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.44;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2518,282,0 chrXV 328049 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.33;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2024,222,0 chrXV 328373 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.0934;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.85;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2808,306,0 chrXV 328457 . C T 2014 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.07;SB=-1.550e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2047,216,0 chrXV 328464 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=15.83;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1869,207,0 chrXV 328519 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=15.96;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1645,180,0 chrXV 328714 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=16.96;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1424,156,0 chrXV 328719 . C G 1390 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=16.16;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1423,159,0 chrXV 328747 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.00;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1491,159,0 chrXV 328791 . C A 1272 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.8651;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=17.42;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1305,138,0 chrXV 328999 . C G 522 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.33;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:555,60,0 chrXV 329015 . T C 428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=5.082;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.179;QD=14.76;ReadPosRankSum=1.494;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:51:461,51,0 chrXV 329046 . A T 609 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.30;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:642,69,0 chrXV 329105 . A C 1199 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.98;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1232,135,0 chrXV 329561 . C G 2257 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7070;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.51;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2290,258,0 chrXV 330217 . T C 1981 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.77;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2014,225,0 chrXV 330566 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.73;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1769,198,0 chrXV 331119 . A T 922 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:955,105,0 chrXV 331250 . T C 879 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=15.16;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:912,102,0 chrXV 331262 . T C 995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.882;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.680;QD=15.08;ReadPosRankSum=1.627;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1028,117,0 chrXV 331520 . T A 2052 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4977;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.06;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2085,225,0 chrXV 331655 . T A 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-0.498;QD=21.15;ReadPosRankSum=0.973;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1577,171,0 chrXV 331767 . A G 2205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.850;QD=19.86;ReadPosRankSum=1.701;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2238,243,0 chrXV 331895 . T C 2510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=122;Dels=0.00;FS=9.582;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.364;QD=20.57;ReadPosRankSum=2.926;SB=-1.478e+03 GT:AD:DP:GQ:PL 1/1:3,119:122:99:2543,282,0 chrXV 332096 . A T 1422 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.47;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1455,159,0 chrXV 332111 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8152;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.44;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1266,135,0 chrXV 332378 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.17;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1910,207,0 chrXV 332899 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=17.56;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:90:823,90,0 chrXV 332916 . C T 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=-1.007;QD=20.14;ReadPosRankSum=1.410;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:96:899,96,0 chrXV 332923 . A G 842 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=19.14;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:875,99,0 chrXV 333273 . C T 813 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.97;SB=-2.390e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:846,93,0 chrXV 333364 . C G 1108 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.31;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1141,126,0 chrXV 333391 . G C 850 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.67;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:883,99,0 chrXV 333403 . T G 849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=-1.092;QD=16.33;ReadPosRankSum=1.868;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:2,49:52:99:882,99,0 chrXV 333897 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.11;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1681,186,0 chrXV 335001 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.09;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1580,180,0 chrXV 335413 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.32;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1780,195,0 chrXV 335429 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.63;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1711,195,0 chrXV 335565 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.38;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1312,147,0 chrXV 336579 . G C 1753 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1786,201,0 chrXV 336629 . C T 2135 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2168,231,0 chrXV 336658 . A G 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.294;QD=20.87;ReadPosRankSum=1.692;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1849,210,0 chrXV 336821 . T C 1864 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=1.431;QD=20.04;ReadPosRankSum=1.694;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1897,213,0 chrXV 337296 . A G 918 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.35;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:951,105,0 chrXV 337425 . A G 3953.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.25;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3953,438,0 chrXV 337464 . T C 3432.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.012;QD=22.14;ReadPosRankSum=1.710;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,153:155:99:3432,387,0 chrXV 337465 . G A 3528.01 PASS AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.91;SB=-1.469e+03 GT:AD:DP:GQ:PL 1/1:0,154:154:99:3528,384,0 chrXV 337546 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.95;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2083,231,0 chrXV 337635 . C T 2470 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.5258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2503,276,0 chrXV 337723 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.5658;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.55;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1985,210,0 chrXV 337772 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.80;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2196,231,0 chrXV 338127 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.56;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1161,129,0 chrXV 338175 . C T 835 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=11.93;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:93:868,93,0 chrXV 338259 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.57;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1314,141,0 chrXV 338412 . G A 1597 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1630,174,0 chrXV 339540 . A T 1680 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8804;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=16.63;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1713,189,0 chrXV 339568 . A G 1689 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2738;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.148;QD=15.93;ReadPosRankSum=1.666;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:1,104:106:99:1722,192,0 chrXV 339637 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.08;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1617,177,0 chrXV 340281 . T C 617 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=18.6669;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=19.90;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:650,72,0 chrXV 340382 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.55;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1163,123,0 chrXV 340440 . C A 1658 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=24.03;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1691,180,0 chrXV 340554 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.04;FS=0.000;HaplotypeScore=4.5070;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=21.91;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1698,180,0 chrXV 340587 . T G 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-1.683;QD=17.80;ReadPosRankSum=1.683;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1297,144,0 chrXV 340588 . T G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.591;QD=17.68;ReadPosRankSum=2.382;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1324,144,0 chrXV 340625 . T C 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.241;QD=18.82;ReadPosRankSum=1.684;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1388,153,0 chrXV 340724 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=14.69;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1414,156,0 chrXV 340736 . A G 1305 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=13.88;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1338,147,0 chrXV 340744 . C T 1136 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=12.76;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1169,123,0 chrXV 340745 . G T 1134 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=12.74;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1167,126,0 chrXV 340746 . C G 1096 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=12.45;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1129,123,0 chrXV 340808 . A G 669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;MQRankSum=-1.732;QD=9.16;ReadPosRankSum=1.685;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:78:702,78,0 chrXV 340815 . T C 672 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.59;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:78:705,78,0 chrXV 340837 . C T 833 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.72;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:866,93,0 chrXV 340839 . T C 887 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=15.84;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:920,102,0 chrXV 340842 . A C 886 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=15.02;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:919,102,0 chrXV 340856 . T G 1270 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=17.40;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1303,147,0 chrXV 340867 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=16.84;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1414,159,0 chrXV 340897 . A G 1707 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=19.18;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1740,192,0 chrXV 340969 . G A 2579 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=24.10;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2612,273,0 chrXV 341165 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.13;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1343,147,0 chrXV 342971 . A G 1461 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.022;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.069;QD=19.48;ReadPosRankSum=2.318;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:2,73:75:99:1494,165,0 chrXV 343103 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.63;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1640,180,0 chrXV 343279 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.49;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2147,231,0 chrXV 343319 . T C 2117 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.33;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2150,237,0 chrXV 343550 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=20.78;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1716,189,0 chrXV 343770 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9758;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.14;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1809,198,0 chrXV 344518 . A C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=3.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.405;QD=22.27;ReadPosRankSum=2.380;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1592,177,0 chrXV 344523 . T C 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=0.453;QD=19.74;ReadPosRankSum=1.679;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1316,147,0 chrXV 344777 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.26;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1238,135,0 chrXV 344813 . T C 685 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=12.69;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:78:718,78,0 chrXV 344829 . A T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=49;Dels=0.00;FS=14.742;HaplotypeScore=6.9318;MLEAC=1;MLEAF=0.500;MQ=37.15;MQ0=0;MQRankSum=2.955;QD=0.27;ReadPosRankSum=-2.764;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,4:49:43:43,0,355 chrXV 344849 . T C 578 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=9.03;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:66:611,66,0 chrXV 344872 . T A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=85;Dels=0.00;FS=0.950;HaplotypeScore=19.5975;MLEAC=1;MLEAF=0.500;MQ=31.38;MQ0=0;MQRankSum=0.526;QD=0.26;ReadPosRankSum=1.920;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:62,23:85:52:52,0,392 chrXV 344882 . T C 367.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.534;DP=82;Dels=0.00;FS=2.302;HaplotypeScore=20.9653;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=0;MQRankSum=-0.932;QD=4.48;ReadPosRankSum=3.909;SB=-3.090e+02 GT:AD:DP:GQ:PL 0/1:19,61:82:41:397,0,41 chrXV 344884 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;DP=80;Dels=0.00;FS=5.404;HaplotypeScore=18.4301;MLEAC=1;MLEAF=0.500;MQ=28.02;MQ0=0;MQRankSum=0.419;QD=0.25;ReadPosRankSum=3.341;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:60,19:80:50:50,0,388 chrXV 344901 . G A 483 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=27.85;MQ0=0;QD=6.11;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:57:516,57,0 chrXV 344907 . C T 27.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;DP=83;Dels=0.00;FS=0.997;HaplotypeScore=8.3369;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=0;MQRankSum=0.146;QD=0.33;ReadPosRankSum=-0.461;SB=-1.280e+02 GT:AD:DP:GQ:PL 0/1:64,19:83:57:57,0,315 chrXV 344910 . A G 31.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;DP=85;Dels=0.00;FS=0.978;HaplotypeScore=8.2934;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=0.482;QD=0.36;ReadPosRankSum=-2.021;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:66,19:85:61:61,0,306 chrXV 344917 . G A 21.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;DP=81;Dels=0.00;FS=1.022;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=27.70;MQ0=0;MQRankSum=1.619;QD=0.26;ReadPosRankSum=-3.732;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:63,18:81:51:51,0,263 chrXV 344921 . T C 365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=59.2705;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;MQRankSum=0.208;QD=4.87;ReadPosRankSum=1.686;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:45:398,45,0 chrXV 344928 . T C 30.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;DP=70;Dels=0.00;FS=12.706;HaplotypeScore=21.7035;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=0.564;QD=0.43;ReadPosRankSum=-2.724;SB=-2.230e+02 GT:AD:DP:GQ:PL 0/1:40,30:70:60:60,0,252 chrXV 344944 . T A 166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=34.2011;MLEAC=1;MLEAF=0.500;MQ=29.43;MQ0=0;MQRankSum=-0.917;QD=2.55;ReadPosRankSum=2.712;SB=-2.140e+02 GT:AD:DP:GQ:PL 0/1:36,29:65:99:196,0,141 chrXV 344954 . T C 312.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.875;DP=69;Dels=0.00;FS=0.997;HaplotypeScore=20.1668;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=0.268;QD=4.52;ReadPosRankSum=2.977;SB=-3.260e+02 GT:AD:DP:GQ:PL 0/1:25,44:69:51:342,0,51 chrXV 344956 . G A 162.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;DP=69;Dels=0.00;FS=2.120;HaplotypeScore=20.1499;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=0.556;QD=2.35;ReadPosRankSum=0.843;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:44,25:69:99:192,0,193 chrXV 344973 . G A 429 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=6.31;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:51:462,51,0 chrXV 344979 . C T 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;DP=66;Dels=0.00;FS=7.041;HaplotypeScore=1.3670;MLEAC=1;MLEAF=0.500;MQ=30.12;MQ0=0;MQRankSum=0.612;QD=0.79;ReadPosRankSum=-3.795;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:51,15:66:82:82,0,276 chrXV 344993 . T C 291 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.0878;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;QD=5.11;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:36:324,36,0 chrXV 345000 . T C 268.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586;DP=54;Dels=0.00;FS=2.624;HaplotypeScore=4.7207;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=2.870;QD=4.97;ReadPosRankSum=1.171;SB=-4.326e+02 GT:AD:DP:GQ:PL 1/1:3,51:54:11:301,11,0 chrXV 345003 . C T 262.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.560;DP=53;Dels=0.00;FS=2.635;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;MQRankSum=2.868;QD=4.96;ReadPosRankSum=0.597;SB=-4.356e+02 GT:AD:DP:GQ:PL 1/1:3,50:53:11:295,11,0 chrXV 345029 . T C 204.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.00;MQ=30.69;MQ0=0;MQRankSum=-1.155;QD=5.67;ReadPosRankSum=1.636;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:27:237,27,0 chrXV 345052 . T A 295.33 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.918;DP=37;Dels=0.00;FS=2.703;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=2.810;QD=7.98;ReadPosRankSum=-1.419;SB=-3.253e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:14:328,14,0 chrXV 345062 . T C 421 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;QD=10.27;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:51:454,51,0 chrXV 345064 . G A 363.03 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;DP=41;Dels=0.00;FS=6.368;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=28.19;MQ0=0;MQRankSum=2.824;QD=8.85;ReadPosRankSum=1.540;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:3,37:41:24:396,24,0 chrXV 345081 . G A 609 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.82;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:69:642,69,0 chrXV 345087 . C T 703 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.04;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:78:736,78,0 chrXV 345090 . A G 664 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.85;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:78:697,78,0 chrXV 345097 . G A 739 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.510;QD=9.47;ReadPosRankSum=1.599;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:81:772,81,0 chrXV 345100 . G T 738 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.71;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:81:771,81,0 chrXV 345101 . T C 706 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.29;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:81:739,81,0 chrXV 345108 . T C 714 SnpCluster AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=7.93;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:81:747,81,0 chrXV 345111 . C T 788 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=8.21;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:90:821,90,0 chrXV 345165 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=11.31;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1164,129,0 chrXV 345183 . C T 1420 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=13.79;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1453,159,0 chrXV 345678 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.78;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1517,165,0 chrXV 345689 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.97;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1418,156,0 chrXV 345964 . T C 1667 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.85;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1700,186,0 chrXV 346309 . A G 944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.144;QD=19.27;ReadPosRankSum=1.660;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:977,108,0 chrXV 346416 . T C 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=7.268;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.983;QD=16.97;ReadPosRankSum=2.319;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1645,183,0 chrXV 346417 . G A 1648 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.53;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1681,183,0 chrXV 346438 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.28;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1898,207,0 chrXV 347064 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.628;QD=22.48;ReadPosRankSum=1.656;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2079,231,0 chrXV 347117 . T A 2047 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.26;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2080,222,0 chrXV 347788 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.70;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1151,129,0 chrXV 347793 . A G 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.604;QD=18.57;ReadPosRankSum=1.668;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1036,117,0 chrXV 347863 . G T 945 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.11;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:978,108,0 chrXV 347921 . A G 873 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.371;QD=17.46;ReadPosRankSum=2.352;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:906,102,0 chrXV 347922 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.10;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:969,105,0 chrXV 348030 . A G 994 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=15.7766;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.88;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1027,117,0 chrXV 348085 . T C 624 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=-0.743;QD=14.86;ReadPosRankSum=1.568;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:75:657,75,0 chrXV 348098 . T C 516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=42;Dels=0.00;FS=3.222;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.330;QD=12.29;ReadPosRankSum=1.485;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:63:549,63,0 chrXV 348149 . C T 601 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.7327;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=13.07;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:634,69,0 chrXV 348182 . A G 768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=45;Dels=0.00;FS=3.782;HaplotypeScore=5.9510;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.846;QD=17.07;ReadPosRankSum=1.652;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,42:45:90:801,90,0 chrXV 348210 . G A 756 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.43;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:789,84,0 chrXV 348325 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.26;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:955,102,0 chrXV 348346 . C T 936 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.10;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:969,108,0 chrXV 348459 . T C 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.485;QD=22.04;ReadPosRankSum=1.663;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1135,129,0 chrXV 348559 . C T 922 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.04;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:955,105,0 chrXV 348744 . A G 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=11.809;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.870;QD=21.40;ReadPosRankSum=2.396;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2002,228,0 chrXV 349053 . T C 2536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.831;DP=113;Dels=0.00;FS=5.523;HaplotypeScore=10.5530;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.134;QD=22.44;ReadPosRankSum=2.884;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:3,110:113:99:2569,282,0 chrXV 349164 . T C 2267 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.24;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2300,255,0 chrXV 349266 . A G 2044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.361;QD=21.29;ReadPosRankSum=1.696;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2077,228,0 chrXV 350879 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.06;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1601,177,0 chrXV 351607 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.72;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2439,267,0 chrXV 351721 . A G 2462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.316;DP=112;Dels=0.00;FS=15.418;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.854;QD=21.98;ReadPosRankSum=3.363;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:4,108:112:99:2495,279,0 chrXV 351780 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.70;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1467,162,0 chrXV 351787 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.74;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1523,162,0 chrXV 351979 . T C 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=86;Dels=0.00;FS=14.382;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.197;QD=19.93;ReadPosRankSum=3.269;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:4,81:86:99:1747,195,0 chrXV 352012 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.88;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1829,198,0 chrXV 352075 . T C 1785 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.40;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1818,204,0 chrXV 352138 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=16.86;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1466,159,0 chrXV 352379 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.96;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1940,207,0 chrXV 352665 . A G 1932 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.71;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1965,219,0 chrXV 352775 . A G 1459 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.20;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1492,165,0 chrXV 353226 . C G 1669 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.34;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1702,189,0 chrXV 353491 . T C 1964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=98;Dels=0.00;FS=8.836;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.499;QD=20.04;ReadPosRankSum=3.366;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:4,93:98:99:1997,219,0 chrXV 353683 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0527;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.09;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1933,204,0 chrXV 353934 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.80;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2439,255,0 chrXV 354230 . C G 724 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.56;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:87:757,87,0 chrXV 354233 . A G 739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.990;QD=17.60;ReadPosRankSum=1.485;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:87:772,87,0 chrXV 354577 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.83;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1428,150,0 chrXV 354687 . G A 1583 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.13;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1616,168,0 chrXV 354753 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.08;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1613,174,0 chrXV 356119 . T G 1052 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.38;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1085,120,0 chrXV 356413 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.60;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1104,120,0 chrXV 356505 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.68;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1941,207,0 chrXV 357029 . C T 1362 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1395,150,0 chrXV 357164 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.62;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1425,159,0 chrXV 357276 . A G 1184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=3.395;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.321;QD=19.73;ReadPosRankSum=1.615;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1217,141,0 chrXV 357367 . C T 956 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.78;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:989,108,0 chrXV 357991 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.62;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1458,162,0 chrXV 358132 . C T 1141 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=16.30;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1174,132,0 chrXV 358738 . T A 1701 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.01;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1734,186,0 chrXV 358922 . C T 2831 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.29;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2864,303,0 chrXV 360359 . G T 1007 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,45:47:99:1040,111,0 chrXV 360406 . A C 1220 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1253,141,0 chrXV 360797 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.31;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1738,186,0 chrXV 360995 . T A 2507 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.00;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2540,276,0 chrXV 361124 . A G 821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=3.324;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.443;QD=18.66;ReadPosRankSum=1.571;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,42:44:96:854,96,0 chrXV 361461 . C A 1433 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1466,156,0 chrXV 363824 . G A 1564 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.34;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1597,168,0 chrXV 363911 . A G 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9801;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.049;QD=18.57;ReadPosRankSum=1.700;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2020,225,0 chrXV 363974 . C A 2450 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.11;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2483,264,0 chrXV 364095 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1115,123,0 chrXV 364145 . C T 1023 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.24;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1056,114,0 chrXV 364302 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.8270;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.59;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1456,156,0 chrXV 365157 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9033;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.70;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2031,225,0 chrXV 365208 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.36;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1913,204,0 chrXV 365792 . T C 2380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.139;QD=21.44;ReadPosRankSum=1.701;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2413,267,0 chrXV 366154 . A G 2747 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.807;QD=20.81;ReadPosRankSum=1.706;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:1,130:132:99:2780,318,0 chrXV 366618 . C T 2912 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-1.398e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2945,318,0 chrXV 366780 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.40;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1430,150,0 chrXV 367673 . A G 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.962;QD=21.78;ReadPosRankSum=1.689;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1797,198,0 chrXV 368025 . A G 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.01;FS=8.451;HaplotypeScore=12.0680;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.926;QD=22.39;ReadPosRankSum=2.333;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2406,258,0 chrXV 368969 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.61;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1558,171,0 chrXV 369165 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.51;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1530,171,0 chrXV 369329 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.23;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1625,177,0 chrXV 369380 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.65;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1428,156,0 chrXV 369399 . A T 1294 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.61;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1327,141,0 chrXV 369488 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.57;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1387,147,0 chrXV 369650 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.31;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1759,198,0 chrXV 369905 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.65;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1487,165,0 chrXV 370133 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.85;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1305,147,0 chrXV 370186 . G A 1219 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6458;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.00;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1252,132,0 chrXV 370229 . T C 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=10.295;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.749;QD=20.16;ReadPosRankSum=2.369;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:1263,144,0 chrXV 370719 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.07;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1120,117,0 chrXV 371126 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.85;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1475,165,0 chrXV 371156 . C A 1305 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=3.6335;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.64;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1338,147,0 chrXV 371158 . A G 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=4.4222;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.805;QD=17.30;ReadPosRankSum=1.586;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1296,144,0 chrXV 371268 . A C 1361 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=15.47;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1394,156,0 chrXV 371543 . G C 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.44;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,174,0 chrXV 371600 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.79;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1820,189,0 chrXV 371932 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.77;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1196,129,0 chrXV 372066 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.85;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1720,186,0 chrXV 372190 . C T 719 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.98;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:81:752,81,0 chrXV 372211 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.96;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:87:796,87,0 chrXV 372266 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.71;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:81:759,81,0 chrXV 372365 . G A 923 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.98;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:956,102,0 chrXV 372460 . T C 881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.090;DP=48;Dels=0.00;FS=8.676;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.109;QD=18.35;ReadPosRankSum=2.348;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:2,46:48:99:914,102,0 chrXV 373083 . T C 3383.01 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.0888;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.16;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,139:140:99:3383,375,0 chrXV 373213 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.41;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1687,186,0 chrXV 373468 . G T 2538 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.51;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2571,273,0 chrXV 373539 . A G 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.686;QD=19.33;ReadPosRankSum=1.667;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1077,120,0 chrXV 373552 . A G 1043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.813;QD=21.29;ReadPosRankSum=1.662;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1076,120,0 chrXV 373586 . T C 924 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.00;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:957,105,0 chrXV 373701 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.86;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1126,120,0 chrXV 373773 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.14;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1259,138,0 chrXV 374751 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1847,198,0 chrXV 374879 . C T 1810 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.67;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1843,195,0 chrXV 375158 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.54;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1559,174,0 chrXV 375315 . G A 2246 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=15.8202;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.53;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2279,252,0 chrXV 375369 . G A 2580 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.64;SB=-1.389e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2613,282,0 chrXV 375591 . G A 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.68;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1956,210,0 chrXV 375648 . C T 2034 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.6924;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.87;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2067,216,0 chrXV 375700 . T C 2254 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=20.87;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2287,252,0 chrXV 375753 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7456;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.02;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1916,213,0 chrXV 375777 . T A 2053 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.33;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2086,222,0 chrXV 375812 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.8677;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.55;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1851,207,0 chrXV 375869 . G C 1570 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5435;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.47;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1603,177,0 chrXV 375910 . T A 1641 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.9366;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=19.77;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1674,177,0 chrXV 376252 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1630,174,0 chrXV 376576 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.11;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1179,126,0 chrXV 376957 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.87;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1702,183,0 chrXV 377032 . T C 1731 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=6.389;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.000;QD=20.13;ReadPosRankSum=2.363;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1764,198,0 chrXV 377174 . C G 2127 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.2888;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.65;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2160,243,0 chrXV 377273 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.47;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2058,222,0 chrXV 377281 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=16.49;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1797,192,0 chrXV 377284 . A G 1740 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=8.061;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.080;QD=15.96;ReadPosRankSum=2.381;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:2,106:109:99:1773,198,0 chrXV 377656 . G A 3184 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=15.6809;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=18.84;SB=-2.025e+03 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3217,342,0 chrXV 377730 . C T 4020.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.05;SB=-2.141e+03 GT:AD:DP:GQ:PL 1/1:0,191:191:99:4020,438,0 chrXV 378043 . T A 2906 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.9171;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.32;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2939,312,0 chrXV 379520 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.97;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1572,171,0 chrXV 379714 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.93;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1971,219,0 chrXV 380446 . T C 1866 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.85;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1899,213,0 chrXV 380513 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.87;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1389,153,0 chrXV 380731 . G A 1254 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.66;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1287,138,0 chrXV 380751 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=16.26;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1334,147,0 chrXV 380767 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=15.94;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1356,147,0 chrXV 380935 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.47;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,92:96:99:1902,213,0 chrXV 381359 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.37;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1356,153,0 chrXV 381445 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.21;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2032,213,0 chrXV 381487 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.07;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1694,186,0 chrXV 381556 . A G 2123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.381;QD=21.23;ReadPosRankSum=1.628;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2156,240,0 chrXV 382531 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.256;QD=20.45;ReadPosRankSum=1.689;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1669,183,0 chrXV 383062 . G C 499 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.10;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,29:31:60:532,60,0 chrXV 383156 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=20.87;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1598,177,0 chrXV 383582 . C G 2587 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.31;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2620,288,0 chrXV 383845 . C A 1415 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.21;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1448,159,0 chrXV 383991 . A G 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.329;QD=21.70;ReadPosRankSum=1.652;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1899,204,0 chrXV 384208 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.95;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2069,219,0 chrXV 384314 . G T 874 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5405;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.19;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:907,96,0 chrXV 384316 . A G 859 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9632;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=16.52;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:892,99,0 chrXV 384361 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=15.52;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1057,114,0 chrXV 384545 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.50;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1632,186,0 chrXV 384663 . G C 935 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=17.64;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:968,108,0 chrXV 384665 . A G 919 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=17.67;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:952,105,0 chrXV 384669 . A G 910 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=16.85;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:943,102,0 chrXV 384747 . A G 603 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.75;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:636,72,0 chrXV 384786 . G A 388 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=12.12;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:421,48,0 chrXV 384791 . G C 357 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=12.75;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:45:390,45,0 chrXV 385049 . A T 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.11;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1426,153,0 chrXV 385189 . C T 605 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=14.76;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:72:638,72,0 chrXV 385213 . G A 419.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.150;DP=101;Dels=0.00;FS=4.151;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.97;MQ0=1;MQRankSum=-0.544;QD=4.15;ReadPosRankSum=5.888;SB=-2.580e+02 GT:AD:DP:GQ:PL 0/1:70,31:101:99:449,0,126 chrXV 385377 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.29;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1896,204,0 chrXV 385654 . A T 1215 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.36;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1248,138,0 chrXV 385806 . G A 1710 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.80;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1743,186,0 chrXV 385862 . A G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.979;QD=21.71;ReadPosRankSum=1.682;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1553,171,0 chrXV 386105 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.40;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1595,171,0 chrXV 386205 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.57;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1501,168,0 chrXV 386207 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.29;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1575,174,0 chrXV 386415 . A C 1829 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.04;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1862,207,0 chrXV 387059 . C A 2142 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.1259;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.02;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2175,231,0 chrXV 387926 . T C 726 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=17.29;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:759,84,0 chrXV 388018 . T C 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.8102;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.543;QD=24.01;ReadPosRankSum=1.577;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1642,160,0 chrXV 388702 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.487;QD=19.00;ReadPosRankSum=1.693;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1724,186,0 chrXV 388707 . A T 1472 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.12;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1505,162,0 chrXV 388869 . T G 1252 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.14;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1285,144,0 chrXV 388875 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.94;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1253,135,0 chrXV 389237 . T G 2163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.511;QD=22.77;ReadPosRankSum=2.397;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2196,246,0 chrXV 389346 . A G 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.415;QD=18.52;ReadPosRankSum=1.683;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1348,147,0 chrXV 390355 . T A 1460 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1493,159,0 chrXV 390692 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.78;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1950,216,0 chrXV 391445 . C A 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=4.3492;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.565;QD=21.39;ReadPosRankSum=1.173;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1359,126,0 chrXV 391475 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=71;Dels=0.00;FS=13.953;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-1.415;QD=20.49;ReadPosRankSum=2.901;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1488,165,0 chrXV 391647 . C G 1105 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.51;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1138,126,0 chrXV 392258 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.01;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1714,183,0 chrXV 393430 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.13;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1746,195,0 chrXV 393958 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.14;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1472,168,0 chrXV 394567 . A G 1023 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.067;QD=19.67;ReadPosRankSum=1.666;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1056,114,0 chrXV 395268 . C T 1862 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.40;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1895,207,0 chrXV 395321 . T C 1498 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.36;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1531,168,0 chrXV 396076 . G C 1665 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.50;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1698,186,0 chrXV 396447 . A C 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.736;QD=19.55;ReadPosRankSum=1.646;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1597,180,0 chrXV 396613 . G A 1755 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.67;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1788,192,0 chrXV 396750 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.51;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1379,147,0 chrXV 396793 . A G 1029 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=16.87;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1062,117,0 chrXV 396805 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.29;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:945,102,0 chrXV 397231 . A T 1045 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.49;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1078,117,0 chrXV 397271 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.47;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1220,138,0 chrXV 397607 . G A 1041 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=20.41;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1074,114,0 chrXV 397645 . C G 1196 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.75;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1229,138,0 chrXV 398023 . G A 1866 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.70;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1899,213,0 chrXV 398242 . C T 1948 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.51;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1981,213,0 chrXV 398416 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.23;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1104,120,0 chrXV 398436 . C A 971 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.74;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1004,108,0 chrXV 398467 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.00;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1485,165,0 chrXV 399016 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.80;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1718,195,0 chrXV 399085 . T C 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=69;Dels=0.00;FS=3.274;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.579;QD=18.86;ReadPosRankSum=1.681;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1334,147,0 chrXV 399212 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1447,153,0 chrXV 399358 . T A 1764 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.51;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1797,195,0 chrXV 399526 . T C 1632 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.219;QD=20.15;ReadPosRankSum=1.689;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1665,186,0 chrXV 399654 . T C 1491 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.818;QD=20.71;ReadPosRankSum=1.588;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1524,171,0 chrXV 399994 . A C 1081 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=15.44;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1114,123,0 chrXV 400021 . T A 857 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=12.42;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:93:890,93,0 chrXV 400022 . T G 852 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=12.35;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:885,96,0 chrXV 400039 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=12.48;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:944,108,0 chrXV 400072 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.60;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1117,120,0 chrXV 400099 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=14.61;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1041,117,0 chrXV 400107 . T C 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=6.428;HaplotypeScore=5.4427;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.657;QD=15.81;ReadPosRankSum=2.386;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1250,141,0 chrXV 400253 . G A 1645 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.09;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1678,177,0 chrXV 400317 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.4901;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.00;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1367,153,0 chrXV 400548 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.40;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2109,240,0 chrXV 400641 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2581;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.29;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1617,174,0 chrXV 401076 . G C 1160 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.09;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1193,132,0 chrXV 401485 . C A 1444 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.06;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1477,162,0 chrXV 402136 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.65;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1505,162,0 chrXV 402498 . A G 2021 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.97;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2054,225,0 chrXV 402509 . A G 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.580;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.370;QD=22.15;ReadPosRankSum=1.693;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2004,225,0 chrXV 402863 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.17;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1607,180,0 chrXV 402926 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.704;QD=20.27;ReadPosRankSum=1.656;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1878,210,0 chrXV 403168 . A G 3021 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.43;SB=-1.787e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3054,348,0 chrXV 403351 . T C 1296 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.75;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1329,147,0 chrXV 404137 . G T 793 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=14.69;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:90:826,90,0 chrXV 404477 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.06;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1732,189,0 chrXV 404516 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.00;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1850,207,0 chrXV 404582 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.18;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1408,153,0 chrXV 405484 . A G 871 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=14.05;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:904,99,0 chrXV 405487 . T G 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.774;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.950;QD=14.43;ReadPosRankSum=1.676;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:942,105,0 chrXV 405535 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=16.93;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1252,141,0 chrXV 405935 . T C 1760 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.73;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1793,198,0 chrXV 406046 . T C 1716 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.225;QD=20.93;ReadPosRankSum=1.690;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1749,195,0 chrXV 406547 . A G 924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.186;QD=19.66;ReadPosRankSum=2.345;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:2,45:47:99:957,108,0 chrXV 406655 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.80;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:898,99,0 chrXV 406687 . A G 930 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.67;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:963,108,0 chrXV 406857 . T C 691 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-0.515;QD=18.68;ReadPosRankSum=1.639;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:81:724,81,0 chrXV 406862 . T C 670 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=18.11;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:78:703,78,0 chrXV 406864 . G C 696 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=18.81;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:729,81,0 chrXV 406895 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.47;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:661,69,0 chrXV 406909 . C A 774 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.59;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:807,90,0 chrXV 407036 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.11;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1470,165,0 chrXV 407061 . G A 1345 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.38;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1378,147,0 chrXV 407249 . T C 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=3.921;HaplotypeScore=9.8549;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.796;QD=18.13;ReadPosRankSum=1.592;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,73:76:99:1411,162,0 chrXV 409021 . C T 1947 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4478;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.28;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1980,219,0 chrXV 409147 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.54;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1820,198,0 chrXV 410118 . A T 1269 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.94;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1302,138,0 chrXV 410132 . G A 1220 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.94;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1253,135,0 chrXV 410471 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.19;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1654,174,0 chrXV 410731 . A T 1612 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=23.36;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1645,174,0 chrXV 410754 . G C 1168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=4.638;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-0.162;QD=18.25;ReadPosRankSum=1.029;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1201,135,0 chrXV 411250 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.181;QD=22.73;ReadPosRankSum=1.681;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1556,171,0 chrXV 411283 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1586,174,0 chrXV 411421 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.00;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1629,180,0 chrXV 411585 . A C 1165 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1198,132,0 chrXV 412174 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.41;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1960,210,0 chrXV 412935 . C G 825 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.26;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:858,93,0 chrXV 412988 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.79;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1515,159,0 chrXV 413171 . T C 2131 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.22;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2164,240,0 chrXV 414198 . A T 2587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=121;Dels=0.01;FS=9.839;HaplotypeScore=19.7412;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.707;QD=21.38;ReadPosRankSum=2.409;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2620,279,0 chrXV 414316 . A G 1625 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=23.21;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1658,186,0 chrXV 414403 . G C 2586 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.85;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2619,291,0 chrXV 414442 . G T 3058 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.69;SB=-1.791e+03 GT:AD:DP:GQ:PL 1/1:0,138:141:99:3091,324,0 chrXV 414454 . G A 2738 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.28;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2771,303,0 chrXV 415035 . A C 1304 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.18;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,64:68:99:1337,150,0 chrXV 415373 . G A 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.9269;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.048;QD=20.53;ReadPosRankSum=0.684;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1593,147,0 chrXV 415944 . T C 757 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:790,87,0 chrXV 416506 . A G 809 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:842,93,0 chrXV 417236 . G A 1973 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.17;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2006,210,0 chrXV 417424 . A G 2183 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.47;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2216,252,0 chrXV 417481 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1672,183,0 chrXV 417628 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1351,150,0 chrXV 417733 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.47;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1880,207,0 chrXV 417786 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.80;MQ0=0;QD=18.17;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1014,108,0 chrXV 418136 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=22.51;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1361,153,0 chrXV 418252 . C A 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.29;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1007,105,0 chrXV 418470 . T C 1320 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.33;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1353,147,0 chrXV 418477 . A T 1256 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=7.3519;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=15.90;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1289,141,0 chrXV 419377 . A G 2010 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.65;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2043,228,0 chrXV 419521 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.67;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1853,195,0 chrXV 419928 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=15.10;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1256,132,0 chrXV 420094 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.50;SB=-1.567e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2431,267,0 chrXV 420114 . T G 2267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=3.346;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.417;QD=18.58;ReadPosRankSum=1.703;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:2300,252,0 chrXV 420184 . T C 2815 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.17;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2848,315,0 chrXV 420277 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.8795;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.11;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2245,243,0 chrXV 421530 . A G 1833 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.56;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1866,204,0 chrXV 422412 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.55;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1341,147,0 chrXV 422702 . T G 1760 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.00;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1793,195,0 chrXV 422707 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.023;QD=19.49;ReadPosRankSum=1.690;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1651,183,0 chrXV 422740 . C T 1466 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.65;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1499,162,0 chrXV 423361 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.42;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1270,138,0 chrXV 423370 . T C 1197 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.62;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1230,138,0 chrXV 423589 . A G 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=2.960;HaplotypeScore=5.7297;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.197;QD=17.86;ReadPosRankSum=2.397;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:2,92:95:99:1730,192,0 chrXV 423598 . A C 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=91;Dels=0.00;FS=1.971;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.069;QD=16.85;ReadPosRankSum=3.162;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:4,86:91:99:1566,177,0 chrXV 423658 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.36;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1594,171,0 chrXV 424102 . A G 2344 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.21;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2377,264,0 chrXV 424140 . G C 1907 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.54;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1940,216,0 chrXV 424341 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.50;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1188,135,0 chrXV 424779 . G C 1755 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.6858;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.47;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1788,198,0 chrXV 425050 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.55;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1615,180,0 chrXV 425179 . T C 1895 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.22;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1928,213,0 chrXV 425221 . G T 1869 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4413;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=15.97;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1902,207,0 chrXV 425237 . T G 1870 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.48;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1903,210,0 chrXV 425464 . T C 1537 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.96;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1570,177,0 chrXV 425518 . T C 1591 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.40;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1624,180,0 chrXV 426767 . G C 1416 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.78;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1449,162,0 chrXV 427406 . T C 2822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.650;QD=22.40;ReadPosRankSum=1.650;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2855,315,0 chrXV 427750 . T C 3065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=5.095;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.735;QD=21.89;ReadPosRankSum=1.682;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3098,354,0 chrXV 427917 . G A 508.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;DP=128;Dels=0.00;FS=3.346;HaplotypeScore=240.0629;MLEAC=1;MLEAF=0.500;MQ=38.07;MQ0=0;MQRankSum=2.017;QD=3.97;ReadPosRankSum=-5.863;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:55,37:128:99:538,0,198 chrXV 427920 . G T 361.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.555;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=67.4564;MLEAC=1;MLEAF=0.500;MQ=36.50;MQ0=0;MQRankSum=0.535;QD=2.96;ReadPosRankSum=-6.233;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:91,30:122:99:391,0,336 chrXV 427923 . G A 380.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.611;DP=110;Dels=0.00;FS=6.864;HaplotypeScore=52.1889;MLEAC=1;MLEAF=0.500;MQ=33.84;MQ0=0;MQRankSum=-2.189;QD=3.45;ReadPosRankSum=-3.380;SB=-2.601e+01 GT:AD:DP:GQ:PL 0/1:57,53:110:99:410,0,212 chrXV 427926 . G T 299.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DP=102;Dels=0.00;FS=7.547;HaplotypeScore=92.4673;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=0;MQRankSum=-1.954;QD=2.93;ReadPosRankSum=-4.047;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:55,46:102:99:329,0,229 chrXV 427929 . A G 308.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.919;DP=100;Dels=0.00;FS=12.558;HaplotypeScore=134.7639;MLEAC=1;MLEAF=0.500;MQ=33.77;MQ0=0;MQRankSum=0.608;QD=3.08;ReadPosRankSum=2.550;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:34,66:100:99:338,0,187 chrXV 427932 . A T 173.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DP=98;Dels=0.00;FS=12.693;HaplotypeScore=129.7552;MLEAC=1;MLEAF=0.500;MQ=32.70;MQ0=0;MQRankSum=-2.181;QD=1.77;ReadPosRankSum=-3.262;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,31:98:99:203,0,240 chrXV 427944 . A G 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;DP=89;Dels=0.00;FS=12.274;HaplotypeScore=236.0232;MLEAC=1;MLEAF=0.500;MQ=33.18;MQ0=0;MQRankSum=-2.375;QD=1.80;ReadPosRankSum=-4.071;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,24:89:99:190,0,193 chrXV 427977 . G A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.759;DP=44;Dels=0.00;FS=1.837;HaplotypeScore=8.7254;MLEAC=1;MLEAF=0.500;MQ=34.20;MQ0=0;MQRankSum=-1.134;QD=0.46;ReadPosRankSum=-0.858;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:35,9:44:50:50,0,126 chrXV 427989 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=13.9776;MLEAC=1;MLEAF=0.500;MQ=34.92;MQ0=0;MQRankSum=0.617;QD=1.12;ReadPosRankSum=-3.796;SB=-1.200e+02 GT:AD:DP:GQ:PL 0/1:23,18:42:77:77,0,97 chrXV 428019 . A G 250 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=5.00;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:33:283,33,0 chrXV 428028 . A G 301 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=5.79;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:39:334,39,0 chrXV 428967 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.84;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1598,168,0 chrXV 429219 . G A 1642 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2172;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.78;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1675,186,0 chrXV 429660 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.78;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1384,150,0 chrXV 429969 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=4.199;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.195;QD=20.42;ReadPosRankSum=1.683;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1483,162,0 chrXV 431558 . G T 1780 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3540;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.45;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1813,198,0 chrXV 431730 . G T 1930 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.11;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1963,213,0 chrXV 431735 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.268;QD=18.17;ReadPosRankSum=1.696;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:1814,207,0 chrXV 431766 . A G 1186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=6.284;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.255;QD=17.44;ReadPosRankSum=1.681;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1219,135,0 chrXV 431789 . A C 956 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=16.48;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:989,108,0 chrXV 431849 . G C 1054 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:51:99:1087,120,0 chrXV 432749 . T C 1049 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1082,120,0 chrXV 433059 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.561;QD=21.20;ReadPosRankSum=1.683;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1538,177,0 chrXV 433431 . T A 2115 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.53;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2148,231,0 chrXV 434336 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.96;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1493,162,0 chrXV 434999 . A T 1478 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9008;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.42;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1511,165,0 chrXV 435038 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=24.86;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1947,216,0 chrXV 435055 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.52;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1326,147,0 chrXV 435062 . C G 1147 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.21;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1180,135,0 chrXV 435177 . A G 633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.615;QD=19.78;ReadPosRankSum=1.621;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,30:32:75:666,75,0 chrXV 435528 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1073,120,0 chrXV 435714 . G A 1155 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.65;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1188,132,0 chrXV 435862 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.28;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1473,159,0 chrXV 435953 . G A 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.818;QD=21.19;ReadPosRankSum=0.433;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1559,174,0 chrXV 436175 . A G 2071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.264;QD=22.27;ReadPosRankSum=1.657;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2104,231,0 chrXV 436196 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.02;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2195,234,0 chrXV 436490 . C G 1533 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.59;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1566,174,0 chrXV 436610 . G C 1829 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.76;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1862,207,0 chrXV 436723 . A G 1108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.553;QD=23.57;ReadPosRankSum=1.659;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1141,126,0 chrXV 436826 . T C 1389 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.832;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;MQRankSum=0.777;QD=23.95;ReadPosRankSum=1.673;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1422,159,0 chrXV 436950 . A G 2023 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.08;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2056,228,0 chrXV 437266 . A T 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.968;QD=20.23;ReadPosRankSum=1.630;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1429,153,0 chrXV 437324 . A T 935 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.33;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:968,102,0 chrXV 437342 . A G 1015 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.81;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1048,117,0 chrXV 437851 . A T 2669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=121;Dels=0.00;FS=4.628;HaplotypeScore=13.6695;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.044;QD=22.06;ReadPosRankSum=1.645;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2702,282,0 chrXV 437900 . G A 2509 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.12;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2542,267,0 chrXV 438605 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1582,171,0 chrXV 438975 . A T 2062 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.41;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2095,231,0 chrXV 440013 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6115;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1566,177,0 chrXV 440166 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1870,210,0 chrXV 440656 . C T 1535 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.72;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1568,165,0 chrXV 440747 . A C 1235 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.16;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1268,141,0 chrXV 441487 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.07;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1742,189,0 chrXV 441965 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.89;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2025,216,0 chrXV 442226 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.01;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2432,264,0 chrXV 442592 . A T 2226 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.43;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2259,240,0 chrXV 442786 . T C 2039 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.055;QD=23.44;ReadPosRankSum=1.692;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:2072,231,0 chrXV 442914 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.64;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1532,162,0 chrXV 442941 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.44;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1513,171,0 chrXV 442944 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=15.79;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1517,168,0 chrXV 443051 . C T 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7369;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.060;QD=16.84;ReadPosRankSum=0.100;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1515,162,0 chrXV 443071 . G C 1529 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.78;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1562,174,0 chrXV 443358 . T C 1452 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.62;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1485,165,0 chrXV 443587 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.59;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1609,171,0 chrXV 443611 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.94;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1499,162,0 chrXV 443738 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.70;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,84:92:99:1569,180,0 chrXV 443811 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.84;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1426,159,0 chrXV 444165 . G T 1421 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.30;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1454,156,0 chrXV 444178 . T C 1165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-1.072;QD=18.20;ReadPosRankSum=1.677;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1198,129,0 chrXV 444322 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1177,126,0 chrXV 444439 . G A 1243 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.83;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1276,135,0 chrXV 444443 . G A 1152 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=17.45;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1185,129,0 chrXV 445855 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4672;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.54;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1647,183,0 chrXV 445951 . C T 2641 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.0434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.45;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2674,291,0 chrXV 446089 . C G 2484 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.35;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2517,279,0 chrXV 447858 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.29;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2061,231,0 chrXV 447942 . C T 1469 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.7214;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.59;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1502,162,0 chrXV 449353 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=16.93;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,42:44:87:778,87,0 chrXV 449867 . A C 1825 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1858,207,0 chrXV 450146 . C A 2227 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.71;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2260,255,0 chrXV 450216 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=14.9971;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.48;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1696,183,0 chrXV 450301 . T C 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.030;QD=18.78;ReadPosRankSum=1.592;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1423,162,0 chrXV 450987 . G A 2006 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.57;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2039,222,0 chrXV 451996 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.13;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1288,141,0 chrXV 452290 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.21;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1570,165,0 chrXV 452446 . T C 1751 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.479;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.605;QD=21.10;ReadPosRankSum=1.605;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1784,181,0 chrXV 453707 . T C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.265;QD=22.01;ReadPosRankSum=2.386;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1728,192,0 chrXV 453731 . A G 1470 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=6.849;HaplotypeScore=8.4341;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.840;QD=20.14;ReadPosRankSum=2.313;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1503,168,0 chrXV 453762 . C T 1686 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.07;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1719,186,0 chrXV 454214 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.01;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1654,174,0 chrXV 454284 . A G 1421 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.56;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1454,165,0 chrXV 454535 . C G 1230 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.21;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1263,144,0 chrXV 454559 . A G 1093 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.87;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1126,123,0 chrXV 454610 . C T 1248 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6650;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.81;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1281,141,0 chrXV 455108 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.38;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1594,177,0 chrXV 456420 . G T 2643 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.87;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2676,282,0 chrXV 457110 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.74;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,219,0 chrXV 457188 . A T 2359 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.13;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2392,258,0 chrXV 457470 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.68;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1359,153,0 chrXV 457531 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.03;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1836,201,0 chrXV 457898 . T C 2349 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.2651;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.16;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2382,267,0 chrXV 458232 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.75;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2096,225,0 chrXV 458312 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.97;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1968,210,0 chrXV 458343 . C A 2203 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=14.3395;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=17.91;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2236,243,0 chrXV 458453 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.30;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1312,138,0 chrXV 458617 . T G 1211 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.25;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1244,141,0 chrXV 458665 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.75;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1534,162,0 chrXV 458817 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.462;DP=74;Dels=0.00;FS=8.245;HaplotypeScore=19.2618;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.278;QD=20.97;ReadPosRankSum=3.702;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:5,68:74:99:1585,177,0 chrXV 458946 . C T 1411 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1444,153,0 chrXV 459102 . T C 912 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.4382;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.00;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:945,105,0 chrXV 459840 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.15;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1796,189,0 chrXV 459980 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=9.7971;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.01;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1852,198,0 chrXV 460848 . T A 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.479;QD=18.12;ReadPosRankSum=1.648;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1519,159,0 chrXV 460866 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.35;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1813,195,0 chrXV 461253 . A T 1754 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.03;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1787,192,0 chrXV 461429 . A G 1700 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=15.855;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.939;QD=20.73;ReadPosRankSum=2.791;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1733,192,0 chrXV 461644 . T C 1124 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=60;Dels=0.00;FS=6.247;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.613;QD=18.73;ReadPosRankSum=2.325;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:2,57:60:99:1157,129,0 chrXV 461776 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.25;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1188,129,0 chrXV 462906 . C G 1008 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.67;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1041,117,0 chrXV 462964 . C T 1039 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.89;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1072,114,0 chrXV 462984 . T A 1006 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.96;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1039,111,0 chrXV 463015 . A C 1021 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.60;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1054,117,0 chrXV 463112 . A C 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5838;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.84;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1157,126,0 chrXV 463185 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.06;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1360,144,0 chrXV 463343 . T A 1304 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.08;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1337,141,0 chrXV 463433 . C A 1043 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.19;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1076,114,0 chrXV 463766 . G T 900 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.3910;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.57;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:933,99,0 chrXV 463787 . A C 881 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.74;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:914,102,0 chrXV 463865 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.02;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1555,162,0 chrXV 463870 . A G 1388 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.14;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1421,159,0 chrXV 463933 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.74;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1270,138,0 chrXV 464215 . A C 822 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;MQRankSum=-1.732;QD=17.12;ReadPosRankSum=1.659;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:93:855,93,0 chrXV 464235 . G C 650 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=14.44;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:75:683,75,0 chrXV 464238 . A G 692 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=0;QD=14.72;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:78:725,78,0 chrXV 464244 . G T 668 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=13.63;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:75:701,75,0 chrXV 464274 . G A 548 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;QD=11.42;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:63:581,63,0 chrXV 464339 . A T 709 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.26;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:742,78,0 chrXV 464594 . T A 652 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.18;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:685,72,0 chrXV 464595 . T A 625 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=1.238;QD=17.86;ReadPosRankSum=1.634;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:72:658,72,0 chrXV 464863 . C T 709 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.66;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:38:78:742,78,0 chrXV 465313 . T C 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-1.732;QD=18.71;ReadPosRankSum=1.584;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1343,147,0 chrXV 465319 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.56;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1461,156,0 chrXV 465410 . C G 1521 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.28;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:88:99:1554,171,0 chrXV 465622 . A G 1974 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.18;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2007,228,0 chrXV 465655 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=16.93;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1455,162,0 chrXV 465661 . G A 1477 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=17.80;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1510,171,0 chrXV 465693 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=15.56;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1293,144,0 chrXV 465910 . G A 2293 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.93;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2326,252,0 chrXV 465934 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.74;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:2207,231,0 chrXV 466090 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.36;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1592,168,0 chrXV 466144 . C G 1546 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.89;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1579,177,0 chrXV 466157 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.92;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1699,186,0 chrXV 466231 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.30;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1661,180,0 chrXV 467044 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.88;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1891,201,0 chrXV 467149 . T A 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=113;Dels=0.00;FS=6.218;HaplotypeScore=7.3708;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.560;QD=21.04;ReadPosRankSum=2.362;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2410,255,0 chrXV 467407 . A G 1465 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1205;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.305;QD=19.80;ReadPosRankSum=1.685;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1498,151,0 chrXV 467641 . T C 2596 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.38;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2629,297,0 chrXV 468284 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.97;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2277,255,0 chrXV 468336 . A G 2569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.841;DP=121;Dels=0.01;FS=2.515;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.319;QD=21.23;ReadPosRankSum=2.891;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:3,117:120:99:2602,288,0 chrXV 468364 . T C 2379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.217;DP=118;Dels=0.00;FS=10.657;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.232;QD=20.16;ReadPosRankSum=3.262;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:4,113:118:99:2412,267,0 chrXV 468561 . A G 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.279;QD=21.32;ReadPosRankSum=1.676;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1376,153,0 chrXV 468569 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.46;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1464,153,0 chrXV 468674 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.94;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1373,153,0 chrXV 468772 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.28;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1899,210,0 chrXV 469093 . C T 2517 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5007;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.27;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2550,270,0 chrXV 469535 . T G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.180;QD=22.07;ReadPosRankSum=1.230;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1578,171,0 chrXV 469545 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.58;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1414,150,0 chrXV 469548 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.71;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1379,147,0 chrXV 469853 . T C 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=3.622;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.402;QD=22.82;ReadPosRankSum=1.697;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2338,255,0 chrXV 470004 . C T 1234 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.28;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1267,138,0 chrXV 470034 . G A 1112 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.80;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1145,123,0 chrXV 470456 . C A 1408 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.35;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1441,162,0 chrXV 470872 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.10;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1695,189,0 chrXV 471315 . G T 1484 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1517,162,0 chrXV 472362 . A G 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3763;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.588;QD=19.75;ReadPosRankSum=1.703;SB=-1.562e+03 GT:AD:DP:GQ:PL 1/1:1,119:122:99:2443,270,0 chrXV 472668 . C T 2376 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.8303;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.00;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2409,267,0 chrXV 472765 . A C 2252 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.65;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2285,252,0 chrXV 473069 . A G 2476 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.72;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2509,282,0 chrXV 473696 . G A 2965 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.4539;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.59;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2998,315,0 chrXV 474069 . A G 1986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=98;Dels=0.00;FS=3.055;HaplotypeScore=7.4868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.093;QD=20.27;ReadPosRankSum=0.741;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2019,225,0 chrXV 474686 . T C 858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=2.952;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.278;QD=17.51;ReadPosRankSum=2.299;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:891,99,0 chrXV 474687 . T C 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.466;QD=17.48;ReadPosRankSum=1.532;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:942,102,0 chrXV 474725 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.79;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1616,189,0 chrXV 475809 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.46;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1664,183,0 chrXV 476648 . A C 780 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:813,90,0 chrXV 477077 . T C 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.291;QD=21.64;ReadPosRankSum=1.606;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1223,135,0 chrXV 477839 . T C 970 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.794;QD=20.21;ReadPosRankSum=1.660;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1003,111,0 chrXV 477881 . G A 881 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.15;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,44:46:99:914,102,0 chrXV 478354 . A G 2081 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.81;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2114,231,0 chrXV 478679 . A G 2305 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.04;SB=-1.515e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2338,258,0 chrXV 478865 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.20;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1941,204,0 chrXV 479299 . T C 353 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.863;QD=18.58;ReadPosRankSum=2.192;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,17:19:45:386,45,0 chrXV 479565 . T C 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.176;QD=24.05;ReadPosRankSum=2.372;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1572,174,0 chrXV 480144 . G A 2433 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5186;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.34;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2466,264,0 chrXV 480180 . G A 1875 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.74;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1908,207,0 chrXV 480717 . A G 1050 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=14.00;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1083,123,0 chrXV 480718 . A T 1050 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=14.00;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1083,117,0 chrXV 480719 . C T 1054 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=14.24;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1087,120,0 chrXV 480751 . T C 805 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1159;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=10.06;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:96:838,96,0 chrXV 480906 . G A 2370 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.79;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2403,261,0 chrXV 480960 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.91;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1792,192,0 chrXV 481308 . C T 2689 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6657;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.60;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2722,297,0 chrXV 481447 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.17;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1471,165,0 chrXV 481630 . C T 1024 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=14.03;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1057,111,0 chrXV 481843 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=24.02;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1306,141,0 chrXV 481860 . T A 1281 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.87;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1314,141,0 chrXV 482608 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.5421;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.86;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2259,243,0 chrXV 483363 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.96;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1153,129,0 chrXV 483971 . C T 2268 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.38;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2301,243,0 chrXV 484524 . C T 1786 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.77;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1819,192,0 chrXV 484571 . G C 2118 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.39;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2151,243,0 chrXV 484875 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4339;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.16;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1847,210,0 chrXV 484953 . G T 1969 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2002,213,0 chrXV 485031 . A G 1518 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1551,177,0 chrXV 485571 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.75;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1455,156,0 chrXV 485588 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.38;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1658,174,0 chrXV 486135 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.11;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1483,162,0 chrXV 486141 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=15.58;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1435,159,0 chrXV 486494 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.25;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1329,141,0 chrXV 486511 . G C 1169 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.19;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1202,135,0 chrXV 487406 . G C 1419 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.92;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:75:99:1452,162,0 chrXV 487809 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.72;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1380,153,0 chrXV 487820 . T C 1350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=73;Dels=0.00;FS=9.401;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-1.042;QD=18.49;ReadPosRankSum=2.904;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:3,70:73:99:1383,159,0 chrXV 487838 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.99;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1343,141,0 chrXV 488252 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.97;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1374,147,0 chrXV 488381 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.85;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1586,177,0 chrXV 488780 . A G 2172 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.16;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2205,249,0 chrXV 488927 . C T 1981 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.87;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2014,222,0 chrXV 489005 . A T 1758 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.32;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1791,192,0 chrXV 489152 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.66;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1763,195,0 chrXV 489625 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.37;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1622,174,0 chrXV 489886 . A C 880 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.95;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:913,99,0 chrXV 489887 . A T 782 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.62;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:815,93,0 chrXV 489971 . T C 677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=3.632;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.231;QD=22.57;ReadPosRankSum=1.617;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:78:710,78,0 chrXV 490896 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1341,147,0 chrXV 491189 . A G 900 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=5.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.884;QD=18.37;ReadPosRankSum=1.662;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:933,102,0 chrXV 491190 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=5.141;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.106;QD=18.78;ReadPosRankSum=1.450;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:953,102,0 chrXV 491483 . C T 1452 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.11;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1485,159,0 chrXV 491651 . T G 1413 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.19;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1446,159,0 chrXV 492191 . C G 2200 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.95;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2233,249,0 chrXV 492287 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.08;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1805,204,0 chrXV 492545 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.22;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2070,225,0 chrXV 492865 . C G 1390 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.53;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1423,159,0 chrXV 492927 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.85;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1934,207,0 chrXV 493377 . T G 1632 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1665,186,0 chrXV 493534 . C T 1104 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.53;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1137,123,0 chrXV 493975 . T C 1259 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.291;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.650;QD=19.37;ReadPosRankSum=1.678;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1292,147,0 chrXV 494421 . G C 1735 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.01;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1768,201,0 chrXV 494571 . A G 2505 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.41;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2538,282,0 chrXV 495525 . A C 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.090;DP=111;Dels=0.00;FS=2.401;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-0.838;QD=15.01;ReadPosRankSum=3.377;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:4,107:111:99:1699,186,0 chrXV 495528 . T C 1671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=5.077;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.732;QD=15.91;ReadPosRankSum=1.698;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1704,189,0 chrXV 496393 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:929,99,0 chrXV 496482 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.98;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1343,144,0 chrXV 503779 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.03;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1884,204,0 chrXV 503846 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.27;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1837,204,0 chrXV 503975 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.74;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1523,168,0 chrXV 504718 . T C 1153 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=19.88;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1186,132,0 chrXV 505541 . C G 1698 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.46;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1731,195,0 chrXV 507802 . C A 2231 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6961;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.25;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2264,255,0 chrXV 508002 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.48;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2616,285,0 chrXV 508404 . A C 2188 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2221,249,0 chrXV 508812 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.95;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2170,231,0 chrXV 508977 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.57;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1703,183,0 chrXV 509207 . T C 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=2.967;HaplotypeScore=6.7054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.556;QD=22.07;ReadPosRankSum=2.388;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1799,198,0 chrXV 509814 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.24;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1350,141,0 chrXV 510382 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.630;QD=21.10;ReadPosRankSum=1.681;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1468,159,0 chrXV 510495 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.90;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1446,156,0 chrXV 510586 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.82;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1341,144,0 chrXV 511377 . C G 1074 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.53;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1107,126,0 chrXV 511443 . T C 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.354;QD=19.24;ReadPosRankSum=1.669;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1091,120,0 chrXV 512729 . A C 1590 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.87;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1623,180,0 chrXV 513625 . T G 1401 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.48;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1434,159,0 chrXV 513637 . A T 1530 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.79;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1563,171,0 chrXV 514366 . C T 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,114:118:99:2556,273,0 chrXV 514625 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.15;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1982,207,0 chrXV 514664 . G C 1716 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.43;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1749,192,0 chrXV 514715 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.47;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1357,153,0 chrXV 514962 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=16.8228;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=14.93;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:78:705,78,0 chrXV 516037 . G A 2349 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.26;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2382,249,0 chrXV 516270 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.28;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2038,222,0 chrXV 516832 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1224,129,0 chrXV 517216 . T C 1133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=57;Dels=0.00;FS=3.174;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.385;QD=19.88;ReadPosRankSum=1.604;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,53:57:99:1166,132,0 chrXV 517247 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.80;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1036,111,0 chrXV 517639 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1520,162,0 chrXV 517647 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.45;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1481,159,0 chrXV 517833 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.74;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1415,159,0 chrXV 517857 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.61;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1249,138,0 chrXV 518278 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.82;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1303,144,0 chrXV 518743 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.69;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1088,120,0 chrXV 520009 . G A 2306 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.54;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2339,255,0 chrXV 520142 . G C 1189 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.02;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1222,135,0 chrXV 520264 . T A 1067 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.52;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1100,117,0 chrXV 520292 . T C 959 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.76;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:992,111,0 chrXV 520321 . C G 718 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.96;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,43:45:84:751,84,0 chrXV 520339 . A T 884 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=17.68;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:917,102,0 chrXV 520515 . T G 1523 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.43;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1556,174,0 chrXV 520674 . C A 1943 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.83;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1976,225,0 chrXV 520701 . A T 1451 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.35;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1484,165,0 chrXV 521081 . T C 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=3.571;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.630;QD=19.21;ReadPosRankSum=1.680;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1320,147,0 chrXV 521161 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.42;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1303,135,0 chrXV 521442 . G C 1489 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8700;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.85;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1522,171,0 chrXV 521727 . T C 1631 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=86;Dels=0.00;FS=11.196;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.777;QD=18.97;ReadPosRankSum=2.918;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:3,83:86:99:1664,189,0 chrXV 522303 . A G 1756 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=21.95;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1789,195,0 chrXV 523000 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.28;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1523,165,0 chrXV 523506 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.25;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1818,198,0 chrXV 523989 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.695;QD=16.76;ReadPosRankSum=1.695;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1592,177,0 chrXV 524311 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9850;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.52;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1755,186,0 chrXV 524711 . T A 1200 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1233,126,0 chrXV 525016 . T C 1340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.108;QD=21.97;ReadPosRankSum=1.675;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1373,150,0 chrXV 525568 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.31;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:779,87,0 chrXV 525601 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.45;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:947,105,0 chrXV 525838 . T C 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=92;Dels=0.00;FS=2.403;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.074;QD=19.36;ReadPosRankSum=3.359;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:4,87:92:99:1814,198,0 chrXV 525850 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.68;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1804,201,0 chrXV 525919 . A G 1694 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.00;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1727,195,0 chrXV 526210 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.36;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1598,171,0 chrXV 526267 . T C 1318 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.274;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.353;QD=20.59;ReadPosRankSum=1.624;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1351,153,0 chrXV 526390 . T C 1303 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.2176;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.36;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1336,147,0 chrXV 527323 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.2698;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.56;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1246,138,0 chrXV 527429 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1872,207,0 chrXV 528085 . G T 856 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.53;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:889,96,0 chrXV 528477 . C T 656 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.26;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:689,78,0 chrXV 528487 . C T 582 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.64;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:615,66,0 chrXV 529675 . G A 2235 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.29;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2268,243,0 chrXV 529807 . G C 2368 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.355e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2401,264,0 chrXV 530989 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.10;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1359,150,0 chrXV 531055 . T C 784 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.23;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:817,90,0 chrXV 531379 . T C 433 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.32;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:51:466,51,0 chrXV 532110 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1410,150,0 chrXV 532911 . G A 1322 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.61;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1355,144,0 chrXV 533224 . A G 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.668;DP=59;Dels=0.00;FS=10.232;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.878;QD=19.58;ReadPosRankSum=2.774;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:3,55:59:99:1188,135,0 chrXV 533398 . A C 1107 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.50;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1140,126,0 chrXV 533423 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.36;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1208,129,0 chrXV 533487 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.21;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2006,228,0 chrXV 533520 . A G 2053 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6640;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.32;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2086,237,0 chrXV 533636 . T C 1381 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=63.6950;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.45;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1414,156,0 chrXV 533847 . C A 1743 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.43;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1776,198,0 chrXV 533850 . T C 1786 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.60;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1819,204,0 chrXV 533983 . T C 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=70;Dels=0.00;FS=10.915;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.806;QD=21.26;ReadPosRankSum=2.747;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:3,65:70:99:1521,168,0 chrXV 536537 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.33;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1212,135,0 chrXV 537181 . C T 487 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.14;SB=-6.534e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:57:520,57,0 chrXV 537204 . A C 522 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.75;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:63:555,63,0 chrXV 537484 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.67;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2204,246,0 chrXV 537974 . G A 1328 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.77;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1361,150,0 chrXV 538149 . C A 1992 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.89;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2025,216,0 chrXV 538230 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.38;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2517,267,0 chrXV 538480 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.61;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1991,213,0 chrXV 538489 . A G 1838 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.98;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1871,201,0 chrXV 539037 . G A 2384 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2417,258,0 chrXV 539133 . C T 2727 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2760,300,0 chrXV 539184 . A G 2229 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2262,255,0 chrXV 539660 . T C 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=69;Dels=0.00;FS=11.729;HaplotypeScore=9.1885;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.672;QD=17.87;ReadPosRankSum=2.377;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1266,147,0 chrXV 540789 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=4.102;HaplotypeScore=9.2012;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.463;QD=21.42;ReadPosRankSum=1.694;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1961,219,0 chrXV 540930 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.24;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1346,147,0 chrXV 541437 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6659;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.77;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1910,207,0 chrXV 541674 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.35;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1736,189,0 chrXV 541939 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.15;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2021,225,0 chrXV 542199 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.26;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1904,204,0 chrXV 542337 . T C 1510 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.61;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1543,171,0 chrXV 542349 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.46;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1238,138,0 chrXV 542472 . T G 2748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=2.882;HaplotypeScore=7.8254;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.467;QD=21.30;ReadPosRankSum=2.412;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2781,312,0 chrXV 543498 . T C 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=1.359;QD=22.14;ReadPosRankSum=1.679;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1472,165,0 chrXV 544630 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.48;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1610,177,0 chrXV 544702 . C A 926 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=16.25;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:959,102,0 chrXV 544718 . C A 799 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=14.02;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:832,87,0 chrXV 544722 . A G 719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=-1.321;QD=12.19;ReadPosRankSum=1.615;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:84:752,84,0 chrXV 544732 . T C 774 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=38.99;MQ0=0;QD=11.91;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:90:807,90,0 chrXV 544740 . A G 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;MQRankSum=-0.529;QD=11.17;ReadPosRankSum=1.684;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:96:837,96,0 chrXV 544812 . C T 1161 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.02;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1194,129,0 chrXV 545406 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.21;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1810,204,0 chrXV 546123 . A C 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=5.191;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=22.08;ReadPosRankSum=1.641;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1755,195,0 chrXV 546340 . T C 1861 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.59;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1894,213,0 chrXV 546819 . C T 2130 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6781;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.19;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2163,231,0 chrXV 547180 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.23;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1764,195,0 chrXV 547205 . G T 1725 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.40;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1758,186,0 chrXV 547325 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1334,147,0 chrXV 547486 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1480,162,0 chrXV 548086 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.92;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1896,207,0 chrXV 548158 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.91;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2003,219,0 chrXV 548428 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.89;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1434,159,0 chrXV 548602 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.47;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1219,135,0 chrXV 548673 . C A 1438 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.57;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1471,159,0 chrXV 548912 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.45;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1342,150,0 chrXV 549059 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.53;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1605,174,0 chrXV 549281 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.43;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1729,186,0 chrXV 549308 . A G 1291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.039;QD=14.34;ReadPosRankSum=1.693;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1324,144,0 chrXV 549314 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=16.01;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1378,144,0 chrXV 549932 . C T 1306 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.77;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1339,144,0 chrXV 550196 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.92;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1263,135,0 chrXV 550213 . C T 1204 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.11;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1237,135,0 chrXV 550314 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.70;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1053,111,0 chrXV 550436 . A G 626 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:659,72,0 chrXV 550493 . G C 554 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.87;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:587,66,0 chrXV 550623 . T C 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=55;Dels=0.00;FS=2.915;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.202;QD=17.36;ReadPosRankSum=2.271;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:988,111,0 chrXV 550671 . T G 1114 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.14;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1147,126,0 chrXV 550672 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.487;QD=16.51;ReadPosRankSum=1.678;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1106,123,0 chrXV 550812 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1196,132,0 chrXV 550922 . C G 1568 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.06;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1601,177,0 chrXV 551128 . A G 1830 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.16;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1863,207,0 chrXV 551234 . A G 1676 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.05;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1709,192,0 chrXV 551437 . A G 1856 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.13;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1889,213,0 chrXV 552340 . A G 2237 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.83;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2270,258,0 chrXV 553024 . G T 555 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=7.9614;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.86;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:588,63,0 chrXV 553076 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2303;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.51;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1406,150,0 chrXV 554893 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.48;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2169,246,0 chrXV 554987 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.75;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1613,171,0 chrXV 555037 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.72;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1749,189,0 chrXV 555261 . A G 2134 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.8638;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.13;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2167,237,0 chrXV 555652 . T C 2741 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2774,306,0 chrXV 555694 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.617;HaplotypeScore=9.4992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.256;QD=20.00;ReadPosRankSum=1.672;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:1,114:116:99:2353,267,0 chrXV 557044 . C A 1528 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1561,174,0 chrXV 557623 . T C 1295 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.216;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.253;QD=19.92;ReadPosRankSum=1.679;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1328,147,0 chrXV 557722 . T C 1175 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.417;QD=21.36;ReadPosRankSum=1.606;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1208,135,0 chrXV 558497 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1325,141,0 chrXV 559459 . T C 2168 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=6.065;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.637;QD=21.68;ReadPosRankSum=2.401;SB=-1.215e+03 GT:AD:DP:GQ:PL 1/1:2,98:100:99:2201,246,0 chrXV 559477 . T C 2048 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2412;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.11;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2081,231,0 chrXV 559591 . A G 1490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.663;QD=18.17;ReadPosRankSum=1.604;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1523,165,0 chrXV 559768 . T G 1483 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.77;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1516,168,0 chrXV 560060 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.56;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1202,135,0 chrXV 560174 . A C 1419 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.27;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1452,165,0 chrXV 560334 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.44;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1963,213,0 chrXV 560610 . A G 2131 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.91;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2164,240,0 chrXV 560807 . A G 641 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=12.1433;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.135;QD=11.05;ReadPosRankSum=1.553;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:78:674,78,0 chrXV 561454 . T C 2419 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2452,273,0 chrXV 561754 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2078,222,0 chrXV 562162 . C T 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.379;QD=19.27;ReadPosRankSum=0.000;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1305,138,0 chrXV 562225 . A T 1068 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7297;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.54;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1101,123,0 chrXV 562357 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1386;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.22;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1455,153,0 chrXV 562468 . A G 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.732;QD=21.94;ReadPosRankSum=1.683;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1569,174,0 chrXV 562666 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.962;QD=19.36;ReadPosRankSum=1.689;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1601,177,0 chrXV 562672 . G C 1524 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.05;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1557,174,0 chrXV 562947 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1007,105,0 chrXV 563008 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.21;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1306,138,0 chrXV 563766 . T C 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.731;QD=23.70;ReadPosRankSum=1.694;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:2190,243,0 chrXV 564207 . T G 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.419;QD=20.42;ReadPosRankSum=2.345;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,115:118:99:2442,279,0 chrXV 564208 . C A 2536 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.05;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2569,267,0 chrXV 564299 . G C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=3.070;HaplotypeScore=5.0363;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.925;QD=19.76;ReadPosRankSum=-0.024;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1495,168,0 chrXV 564321 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.82;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1699,186,0 chrXV 564623 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.58;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2314,249,0 chrXV 565616 . T C 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.139;QD=21.29;ReadPosRankSum=1.653;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1885,207,0 chrXV 565891 . T C 1810 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1843,207,0 chrXV 566126 . T A 1430 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.67;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1463,162,0 chrXV 566165 . T C 1483 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.49;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1516,168,0 chrXV 566210 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.15;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1343,147,0 chrXV 566353 . G A 1383 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.69;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1416,150,0 chrXV 566373 . A C 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;DP=71;Dels=0.00;FS=4.363;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.147;QD=19.97;ReadPosRankSum=0.024;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1451,137,0 chrXV 566430 . G T 1146 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.10;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1179,123,0 chrXV 566502 . A G 1247 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.942;DP=68;Dels=0.00;FS=2.835;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.889;QD=18.34;ReadPosRankSum=2.341;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1280,144,0 chrXV 566564 . A C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=8.092;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.134;QD=23.75;ReadPosRankSum=2.331;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:2004,228,0 chrXV 568346 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1214,135,0 chrXV 568462 . A T 1278 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.27;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1311,138,0 chrXV 568494 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.4045;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.382;QD=17.55;ReadPosRankSum=1.642;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1402,159,0 chrXV 568761 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1683,180,0 chrXV 569013 . T A 2468 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.74;SB=-1.393e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2501,273,0 chrXV 569770 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.85;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1475,159,0 chrXV 569787 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.98;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1292,144,0 chrXV 569838 . T C 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=64;Dels=0.00;FS=6.232;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.078;QD=19.61;ReadPosRankSum=2.293;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1288,144,0 chrXV 570373 . A T 1657 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.70;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1690,180,0 chrXV 571256 . A C 2493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.899;DP=131;Dels=0.00;FS=2.543;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.774;QD=19.03;ReadPosRankSum=2.899;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,126:131:99:2526,276,0 chrXV 571521 . T A 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=3.286;QD=17.81;ReadPosRankSum=-1.206;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:4,50:54:99:995,108,0 chrXV 571585 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.16;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1142,132,0 chrXV 571687 . G A 208.01 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.9324;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;QD=6.12;SB=-5.602e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:27:241,27,0 chrXV 571837 . T A 437 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=15.07;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:51:470,51,0 chrXV 571876 . T G 264 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=11.48;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:33:297,33,0 chrXV 571945 . C T 916 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=22.90;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:949,102,0 chrXV 572041 . G A 668 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=16.29;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:75:701,75,0 chrXV 572098 . G A 757 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=13.28;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:87:790,87,0 chrXV 572101 . A C 721 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.67;MQ0=0;QD=12.65;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:87:754,87,0 chrXV 572102 . C T 721 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=12.43;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:754,84,0 chrXV 572107 . T G 685 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=5.689;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;MQRankSum=-1.732;QD=10.87;ReadPosRankSum=1.677;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:84:718,84,0 chrXV 573068 . T A 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.754;DP=115;Dels=0.00;FS=15.311;HaplotypeScore=19.6856;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.389;QD=18.90;ReadPosRankSum=3.909;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:6,109:115:99:2207,234,0 chrXV 573127 . T C 3007 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.6642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.11;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,134:136:99:3040,339,0 chrXV 573228 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.02;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2135,240,0 chrXV 573248 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.07;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1845,204,0 chrXV 573324 . A T 1336 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.55;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1369,150,0 chrXV 573358 . A G 1377 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=16.79;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1410,159,0 chrXV 573377 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=15.22;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1159,126,0 chrXV 573378 . A G 1103 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.000;QD=15.32;ReadPosRankSum=1.636;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1136,123,0 chrXV 573434 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6142;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=15.81;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1614,180,0 chrXV 573819 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.61;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1416,156,0 chrXV 574266 . A T 1729 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.09;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1762,186,0 chrXV 574378 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.88;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2390,252,0 chrXV 574716 . C T 860 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.70;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:893,99,0 chrXV 576960 . C T 229 filter AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.20;MQ0=72;QD=2.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:35,62:97:30:262,30,0 chrXV 577212 . C T 228.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;DP=119;Dels=0.00;FS=87.599;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=30;MQRankSum=5.274;QD=1.92;ReadPosRankSum=1.804;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,34:119:99:258,0,1163 chrXV 577242 . C T 390.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.197;DP=114;Dels=0.00;FS=128.191;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=1;MQRankSum=7.619;QD=3.42;ReadPosRankSum=-1.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:86,28:114:99:420,0,1415 chrXV 577326 . C T 720 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=82;Dels=0.00;FS=33.241;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=44;MQRankSum=2.830;QD=8.78;ReadPosRankSum=2.259;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:22,60:82:61:753,61,0 chrXV 577407 . C T 1375.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.779;DP=107;Dels=0.00;FS=82.760;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=34.05;MQ0=26;MQRankSum=4.528;QD=12.85;ReadPosRankSum=1.568;SB=-2.310e+02 GT:AD:DP:GQ:PL 0/1:27,80:107:64:1405,0,64 chrXV 577503 . C T 784 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=11;QD=12.44;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:90:817,90,0 chrXV 577509 . A G 809 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=15;QD=12.64;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:842,93,0 chrXV 577827 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.56;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1871,198,0 chrXV 577890 . C T 733 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=18.32;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:766,84,0 chrXV 578881 . T G 1754 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1787,210,0 chrXV 578986 . T C 1700 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.77;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1733,192,0 chrXV 579079 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1633,177,0 chrXV 579277 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.9614;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.73;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2272,240,0 chrXV 580206 . A G 519 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:60:552,60,0 chrXV 580333 . C G 1209 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.25;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1242,135,0 chrXV 580351 . C T 1149 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.94;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1182,129,0 chrXV 580924 . G A 1621 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.33;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1654,177,0 chrXV 581450 . T C 852 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.39;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,47:49:99:885,99,0 chrXV 582005 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1140,120,0 chrXV 582590 . G A 751 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.76;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:38:84:784,84,0 chrXV 582812 . G C 1482 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1515,168,0 chrXV 582877 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.10;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1771,198,0 chrXV 583109 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.21;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1916,213,0 chrXV 584081 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.13;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1305,144,0 chrXV 584668 . T C 2809 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.2749;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.36;SB=-1.753e+03 GT:AD:DP:GQ:PL 1/1:0,153:153:99:2842,312,0 chrXV 584993 . C T 2559 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.31;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2592,285,0 chrXV 585299 . A G 1805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DP=102;Dels=0.00;FS=5.318;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.543;QD=17.70;ReadPosRankSum=2.836;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:4,98:102:99:1838,204,0 chrXV 585644 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.05;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2238,249,0 chrXV 585683 . T C 1645 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.14;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1678,183,0 chrXV 585698 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.732;QD=16.29;ReadPosRankSum=1.693;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1499,171,0 chrXV 585808 . T C 1750 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.33;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1783,201,0 chrXV 586092 . C G 1302 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=15.69;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1335,153,0 chrXV 586304 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.15;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1794,201,0 chrXV 587316 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.78;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,88:94:99:1986,219,0 chrXV 587394 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.30;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,103:112:99:2083,237,0 chrXV 587428 . A G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=2.603;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.794;QD=19.52;ReadPosRankSum=2.932;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:3,100:103:99:2044,228,0 chrXV 587565 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.30;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1503,165,0 chrXV 588756 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.75;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1988,216,0 chrXV 589536 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1351,150,0 chrXV 589839 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.15;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1158,123,0 chrXV 590260 . A T 1030 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1063,114,0 chrXV 590800 . G A 1573 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.97;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1606,177,0 chrXV 591118 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.64;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1349,144,0 chrXV 591121 . A G 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.544;QD=18.64;ReadPosRankSum=1.683;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1338,147,0 chrXV 591904 . G A 1637 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=17.99;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1670,183,0 chrXV 592330 . C A 2670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.1862;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.039;QD=21.19;ReadPosRankSum=1.704;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,124:126:99:2703,300,0 chrXV 592827 . A T 1833 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.82;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1866,201,0 chrXV 592863 . T G 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.947;DP=98;Dels=0.00;FS=6.431;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.143;QD=20.57;ReadPosRankSum=2.349;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:2,96:98:99:2049,225,0 chrXV 593587 . A G 836 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.42;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:96:869,96,0 chrXV 593734 . A G 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=3.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-2.199;QD=18.95;ReadPosRankSum=2.283;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1151,129,0 chrXV 593812 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.55;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1714,186,0 chrXV 594267 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.97;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2150,234,0 chrXV 594292 . A C 1715 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6764;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.94;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1748,195,0 chrXV 594439 . T A 789 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=17.93;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:1,43:44:90:822,90,0 chrXV 594440 . G T 782 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=17.38;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:90:815,90,0 chrXV 594455 . G C 808 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.96;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:93:841,93,0 chrXV 594686 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=8.59;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrXV 594737 . C T 304 filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=25.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:12:36:337,36,0 chrXV 595082 . G A 71.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.04;MQ0=3;QD=10.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:104,12,0 chrXV 595083 . T C 71.51 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.04;MQ0=3;QD=10.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,4:7:12:104,12,0 chrXV 595098 . A T 97.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=3;QD=9.73;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:3,7:10:15:130,15,0 chrXV 595107 . C T 94.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=2;QD=10.47;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:2,7:9:15:127,15,0 chrXV 595110 . C A 102.26 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=2;QD=11.36;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:2,7:9:15:135,15,0 chrXV 600680 . A T 43.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=4;QD=3.14;SB=-9.731e-01 GT:AD:DP:GQ:PL 1/1:4,10:14:9:76,9,0 chrXV 600689 . C T 68.51 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=2;QD=5.27;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:2,11:13:12:101,12,0 chrXV 600692 . C A 75.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=1;QD=6.29;SB=-5.183e-01 GT:AD:DP:GQ:PL 1/1:1,11:12:12:108,12,0 chrXV 600777 . T A 654 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=14.53;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:687,72,0 chrXV 600811 . C G 1119 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=21.94;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1152,129,0 chrXV 600847 . A G 1205 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=6.463;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.782;QD=19.44;ReadPosRankSum=1.565;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1238,141,0 chrXV 600857 . A C 1160 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=17.58;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1193,138,0 chrXV 600864 . A T 1062 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=18.00;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1095,117,0 chrXV 600919 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.32;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1308,147,0 chrXV 600978 . G C 1306 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.41;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1339,147,0 chrXV 600980 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.59;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1289,147,0 chrXV 601015 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=16.55;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1059,120,0 chrXV 601064 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.20;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1427,159,0 chrXV 601255 . C T 1796 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.38;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1829,201,0 chrXV 601307 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.71;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1827,192,0 chrXV 601569 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.83;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1520,162,0 chrXV 601746 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.5858;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.81;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2246,246,0 chrXV 601761 . A G 1810 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.57;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1843,204,0 chrXV 601911 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.01;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1614,180,0 chrXV 602229 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=21.57;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1284,135,0 chrXV 602238 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=20.97;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1249,132,0 chrXV 602250 . G A 1223 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.82;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1256,135,0 chrXV 602578 . A G 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.010;QD=23.79;ReadPosRankSum=1.636;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1746,195,0 chrXV 602700 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.20;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1751,186,0 chrXV 602945 . C T 1844 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2376;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.95;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1877,198,0 chrXV 603179 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.36;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1336,138,0 chrXV 603257 . C G 1348 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.64;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1381,150,0 chrXV 603266 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.25;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1253,135,0 chrXV 603325 . G A 1135 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=16.69;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1168,123,0 chrXV 603538 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.23;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1300,144,0 chrXV 603549 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.16;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1239,135,0 chrXV 604762 . G C 2403 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9043;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.25;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2436,270,0 chrXV 605161 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.01;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2080,228,0 chrXV 605644 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.35;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,80:83:99:1805,189,0 chrXV 605914 . T A 2687 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.37;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2720,306,0 chrXV 605978 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=24.89;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2124,231,0 chrXV 606232 . G A 2664 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.03;FS=0.000;HaplotypeScore=12.1698;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.59;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2697,288,0 chrXV 606234 . C T 2561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=11.3811;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.799;QD=19.11;ReadPosRankSum=1.679;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:1,129:132:99:2594,276,0 chrXV 606329 . G T 1657 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.97;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1690,186,0 chrXV 606337 . A G 1632 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.76;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1665,189,0 chrXV 606373 . A G 1472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=80;Dels=0.00;FS=5.366;HaplotypeScore=11.6208;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.168;QD=18.40;ReadPosRankSum=3.343;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:4,75:80:99:1505,168,0 chrXV 606670 . C A 1216 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.42;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1249,141,0 chrXV 606771 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.4655;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.46;SB=-1.323e+03 GT:AD:DP:GQ:PL 1/1:0,109:113:99:2345,249,0 chrXV 606849 . G T 1675 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1708,186,0 chrXV 606886 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1817,192,0 chrXV 607151 . G C 1131 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.84;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1164,129,0 chrXV 607332 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.91;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1194,135,0 chrXV 608418 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.73;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1318,144,0 chrXV 608505 . T C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=4.708;HaplotypeScore=7.4060;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.357;QD=18.34;ReadPosRankSum=1.630;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1317,144,0 chrXV 608673 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.48;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1202,135,0 chrXV 608682 . T C 1067 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.08;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1100,129,0 chrXV 608850 . T C 906 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.42;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:939,105,0 chrXV 608958 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2277;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.92;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1395,159,0 chrXV 609135 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=15.5813;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=10.81;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:78:714,78,0 chrXV 609344 . G T 1546 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=16.10;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1579,171,0 chrXV 609550 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.24;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1611,171,0 chrXV 609836 . T C 2557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.705;DP=121;Dels=0.00;FS=4.897;HaplotypeScore=10.4033;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.257;QD=21.13;ReadPosRankSum=3.718;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:5,116:121:99:2590,288,0 chrXV 610300 . T C 1632 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.43;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1665,189,0 chrXV 610549 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1127;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.36;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1732,183,0 chrXV 610554 . C G 1546 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.34;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1579,177,0 chrXV 610660 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.89;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1724,186,0 chrXV 610864 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.87;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1139,129,0 chrXV 610882 . A C 998 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.19;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1031,114,0 chrXV 610901 . T C 965 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.30;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:998,111,0 chrXV 610939 . T C 1396 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.16;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1429,156,0 chrXV 611138 . T C 1942 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.22;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1975,219,0 chrXV 611686 . A G 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=9.778;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.860;QD=23.44;ReadPosRankSum=2.363;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2682,297,0 chrXV 612123 . G A 1744 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.53;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1777,189,0 chrXV 612840 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.64;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1418,159,0 chrXV 614674 . A G 2573 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.20;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2606,288,0 chrXV 614917 . A C 2654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=7.639;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.191;QD=20.90;ReadPosRankSum=2.314;SB=-1.265e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2687,303,0 chrXV 614998 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.06;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1875,207,0 chrXV 615019 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.95;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1848,198,0 chrXV 615172 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=17.84;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1888,204,0 chrXV 615175 . A G 1787 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-1.572;QD=17.69;ReadPosRankSum=2.401;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:1820,207,0 chrXV 615199 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.86;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1768,189,0 chrXV 615511 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.19;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1622,171,0 chrXV 615643 . A G 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.51;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1428,159,0 chrXV 615985 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1573,171,0 chrXV 616818 . A T 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.645;QD=17.69;ReadPosRankSum=1.664;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:988,105,0 chrXV 616830 . T C 875 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=17.50;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:908,102,0 chrXV 616846 . C T 1069 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.80;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1102,117,0 chrXV 616962 . C G 814 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.70;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:46:93:847,93,0 chrXV 617145 . A G 740 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.47;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:773,84,0 chrXV 617178 . T A 736 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=7.586;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.272;QD=18.40;ReadPosRankSum=2.327;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:81:769,81,0 chrXV 617296 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.67;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1121,117,0 chrXV 617325 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.56;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1329,141,0 chrXV 617354 . C A 1156 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.23;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1189,126,0 chrXV 617389 . C T 1131 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1164,123,0 chrXV 617695 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.63;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1323,141,0 chrXV 617892 . A G 1613 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.72;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1646,183,0 chrXV 618571 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=21.68;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1399,147,0 chrXV 618586 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=20.22;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1206,135,0 chrXV 618618 . G T 1047 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=18.37;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1080,120,0 chrXV 618723 . G A 1281 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.84;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1314,147,0 chrXV 618788 . G A 527 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=9.94;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:60:560,60,0 chrXV 618805 . C T 475 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=9.69;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:54:508,54,0 chrXV 618815 . G A 480 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=9.06;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:57:513,57,0 chrXV 618829 . C T 568 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=11.83;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:601,63,0 chrXV 618848 . T C 421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=7.068;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;MQRankSum=0.985;QD=8.59;ReadPosRankSum=2.350;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:51:454,51,0 chrXV 618889 . G A 594 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;QD=11.65;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:627,72,0 chrXV 618898 . C A 513 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=10.06;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:63:546,63,0 chrXV 618915 . C T 641 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=12.09;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:674,78,0 chrXV 618919 . G C 632 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=13.17;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:665,78,0 chrXV 618920 . A G 584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.82;MQ0=0;MQRankSum=-0.361;QD=11.68;ReadPosRankSum=1.660;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,47:50:52:617,52,0 chrXV 618941 . G A 757 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=12.62;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:87:790,87,0 chrXV 618956 . T C 643 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=11.28;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:78:676,78,0 chrXV 618968 . A G 631 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=11.07;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:75:664,75,0 chrXV 618989 . C T 534 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=11.12;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:63:567,63,0 chrXV 619017 . T C 457 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=12.35;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:490,54,0 chrXV 619018 . C T 461 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;QD=12.46;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:494,54,0 chrXV 619031 . C G 429 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=10.46;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,38:41:51:462,51,0 chrXV 619052 . G T 839 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0538;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=13.98;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:872,96,0 chrXV 619168 . C T 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5011;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=24.26;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2483,267,0 chrXV 619211 . A G 1880 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=20.43;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1913,222,0 chrXV 619220 . G A 1840 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=21.90;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1873,204,0 chrXV 619251 . G C 697 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=14.22;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:730,90,0 chrXV 619268 . G A 185.01 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=7.40;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:27:218,27,0 chrXV 619285 . G A 86.26 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=3.92;SB=-9.327e+01 GT:AD:DP:GQ:PL 1/1:0,21:22:15:119,15,0 chrXV 619293 . C T 117.13 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;QD=4.69;SB=-1.381e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:18:150,18,0 chrXV 619317 . A G 329 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=10.61;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:42:362,42,0 chrXV 619338 . G A 314 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=10.83;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:42:347,42,0 chrXV 619352 . G A 394 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=12.31;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:48:427,48,0 chrXV 619392 . T C 265 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=7.57;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:35:36:298,36,0 chrXV 619398 . A G 263 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=7.74;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:36:296,36,0 chrXV 619406 . G C 264 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=0;QD=7.33;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:36:297,36,0 chrXV 619417 . C T 389 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=7.78;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:48:422,48,0 chrXV 619456 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=0.801;QD=10.71;ReadPosRankSum=1.695;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1029,117,0 chrXV 619485 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=13.16;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1270,135,0 chrXV 619579 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=15.75;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1120,126,0 chrXV 619601 . A G 850 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;MQRankSum=-0.304;QD=13.93;ReadPosRankSum=2.329;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:2,59:61:99:883,102,0 chrXV 619644 . T C 176.01 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=5.03;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:27:209,27,0 chrXV 619666 . G A 368 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=27.8509;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=8.98;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:401,45,0 chrXV 619772 . T C 438 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=14.13;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:471,54,0 chrXV 619776 . G A 477 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=15.39;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:54:510,54,0 chrXV 619795 . C T 631 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=13.43;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:664,75,0 chrXV 619836 . A C 1188 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.16;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1221,135,0 chrXV 619861 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.49;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1300,150,0 chrXV 620022 . G C 1343 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=21.32;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1376,153,0 chrXV 620082 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.52;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1389,150,0 chrXV 620433 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1205,129,0 chrXV 620535 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.38;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1734,183,0 chrXV 620580 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=69;Dels=0.00;FS=4.393;HaplotypeScore=8.0892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.207;QD=22.64;ReadPosRankSum=1.627;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,65:69:99:1595,177,0 chrXV 620613 . G A 1869 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.07;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1902,213,0 chrXV 620652 . C A 1703 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.35;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1736,195,0 chrXV 620691 . G A 1919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.469;QD=22.06;ReadPosRankSum=0.754;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1952,195,0 chrXV 620962 . G A 2113 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.32;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2146,234,0 chrXV 621636 . C T 1663 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.88;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1696,180,0 chrXV 621667 . T A 1672 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.533;QD=21.44;ReadPosRankSum=1.688;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1705,180,0 chrXV 621669 . A G 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.949;QD=19.38;ReadPosRankSum=1.691;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1700,189,0 chrXV 623040 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.17;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1341,147,0 chrXV 623184 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.32;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1549,165,0 chrXV 623349 . G C 1032 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.11;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1065,117,0 chrXV 623358 . A T 1026 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.65;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1059,114,0 chrXV 623415 . T C 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=75;Dels=0.00;FS=14.320;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.014;QD=14.39;ReadPosRankSum=2.821;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:3,71:75:99:1112,126,0 chrXV 623422 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=15.64;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1190,126,0 chrXV 623604 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4068;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.93;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1456,156,0 chrXV 623880 . A G 2486 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3858;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.25;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2519,285,0 chrXV 624057 . C T 1687 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1720,183,0 chrXV 625581 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.34;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1615,174,0 chrXV 626516 . A T 897 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=14.47;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:930,96,0 chrXV 626519 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=15.05;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:951,99,0 chrXV 626602 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.48;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2439,261,0 chrXV 626802 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.80;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1302,147,0 chrXV 627315 . C T 2341 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5646;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=21.48;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2374,258,0 chrXV 628042 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:79:99:1745,195,0 chrXV 628552 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.25;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2058,222,0 chrXV 628572 . C A 1904 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.13;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1937,210,0 chrXV 628846 . A G 1747 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=15.46;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1780,198,0 chrXV 628888 . T C 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.272;QD=17.28;ReadPosRankSum=1.703;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2124,237,0 chrXV 628909 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=16.76;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2162,237,0 chrXV 629011 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.51;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1990,216,0 chrXV 629093 . A T 1583 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.54;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1616,177,0 chrXV 629470 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.36;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1318,141,0 chrXV 629650 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.23;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1054,117,0 chrXV 631404 . T C 2452 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.2652;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.32;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2485,276,0 chrXV 631620 . T C 1180 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.3422;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.73;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1213,135,0 chrXV 631668 . C G 1435 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.94;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1468,162,0 chrXV 632823 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.034;DP=88;Dels=0.00;FS=2.917;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.694;QD=21.26;ReadPosRankSum=0.156;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,85:88:99:1904,173,0 chrXV 633004 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.33;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1462,153,0 chrXV 633069 . C T 2694 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.43;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2727,294,0 chrXV 633360 . T C 3021 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.9274;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.73;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3054,336,0 chrXV 634307 . T C 2056 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2089,225,0 chrXV 634711 . T C 1955 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1988,222,0 chrXV 635248 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.07;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1357,147,0 chrXV 635737 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1629,183,0 chrXV 635929 . T C 1079 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.6280;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.16;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1112,123,0 chrXV 636791 . A G 2282 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.242;QD=21.53;ReadPosRankSum=1.699;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2315,249,0 chrXV 637662 . T G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=108;Dels=0.00;FS=10.916;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.760;QD=18.79;ReadPosRankSum=2.933;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2062,228,0 chrXV 637710 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.68;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1938,216,0 chrXV 637752 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.72;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1571,180,0 chrXV 637866 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.39;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1688,192,0 chrXV 638028 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=15.81;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1535,171,0 chrXV 638037 . G A 1137 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=13.70;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1170,132,0 chrXV 638040 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=13.14;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1084,123,0 chrXV 638088 . C T 1623 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.08;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1656,177,0 chrXV 638136 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.22;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2122,234,0 chrXV 638427 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.659;QD=18.41;ReadPosRankSum=1.537;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1340,150,0 chrXV 638439 . C A 1283 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.59;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1316,141,0 chrXV 638499 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=14.96;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1140,120,0 chrXV 638526 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.3355;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.81;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1075,117,0 chrXV 638958 . T C 2135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-0.324;QD=22.47;ReadPosRankSum=2.398;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2168,240,0 chrXV 639120 . T C 2613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=127;Dels=0.00;FS=6.407;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.261;QD=20.57;ReadPosRankSum=2.411;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:2,125:127:99:2646,288,0 chrXV 639154 . G T 2023 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.73;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2056,222,0 chrXV 639159 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=16.07;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1720,192,0 chrXV 639226 . A G 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.048;QD=16.06;ReadPosRankSum=1.684;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1189,132,0 chrXV 639243 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.93;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1218,126,0 chrXV 639299 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=16.15;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1616,177,0 chrXV 639307 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5129;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=16.12;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1532,168,0 chrXV 639313 . G T 1625 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3282;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=17.29;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1658,177,0 chrXV 639334 . G A 1934 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=18.42;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1967,207,0 chrXV 639347 . T A 1811 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=19.27;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1844,201,0 chrXV 639365 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=18.15;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1648,183,0 chrXV 639455 . G T 2115 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=102;Dels=0.02;FS=0.000;HaplotypeScore=27.4775;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.990;QD=20.74;ReadPosRankSum=0.212;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2148,237,0 chrXV 639717 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.31;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1929,225,0 chrXV 639758 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.37;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1890,198,0 chrXV 639978 . A G 3113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=155;Dels=0.00;FS=4.743;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.235;QD=20.08;ReadPosRankSum=1.687;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:1,154:155:99:3146,342,0 chrXV 639982 . T C 2968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=156;Dels=0.00;FS=2.579;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.065;QD=19.03;ReadPosRankSum=2.942;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:3,153:156:99:3001,336,0 chrXV 640127 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.83;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1897,210,0 chrXV 640481 . A G 1957 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.46;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1990,216,0 chrXV 640538 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.67;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1548,162,0 chrXV 640649 . G A 2458 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.19;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2491,264,0 chrXV 640992 . G A 2382 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.47;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2415,258,0 chrXV 641108 . C A 1306 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.41;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1339,144,0 chrXV 641196 . C T 2275 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.95;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2308,243,0 chrXV 641229 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.62;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2182,231,0 chrXV 641337 . T G 1330 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.02;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1363,150,0 chrXV 641351 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=14.51;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1165,132,0 chrXV 641453 . T C 2152 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.42;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2185,240,0 chrXV 641462 . T A 1972 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.41;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2005,228,0 chrXV 641468 . A G 1912 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.48;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1945,219,0 chrXV 641537 . T C 921 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=15.88;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:954,105,0 chrXV 641538 . T A 962 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=0;QD=16.59;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:995,105,0 chrXV 641550 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=15.57;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1076,114,0 chrXV 641551 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=14.77;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1052,120,0 chrXV 641585 . C G 1579 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=17.74;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1612,174,0 chrXV 641601 . C G 1483 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=17.87;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1516,168,0 chrXV 641755 . T A 2484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.378;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-0.140;QD=21.98;ReadPosRankSum=1.670;SB=-1.348e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2517,270,0 chrXV 642038 . C T 1273 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.91;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1306,147,0 chrXV 642126 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.892;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=0.071;QD=18.76;ReadPosRankSum=1.697;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1871,204,0 chrXV 642138 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.25;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2017,225,0 chrXV 642164 . A G 1355 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9606;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.532;QD=13.42;ReadPosRankSum=1.698;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1388,156,0 chrXV 642294 . G T 1548 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=79.0181;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.83;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1581,171,0 chrXV 642380 . G A 1899 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.99;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,95:100:99:1932,213,0 chrXV 642471 . A G 2465 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.89;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2498,285,0 chrXV 642646 . G A 2856 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.41;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2889,306,0 chrXV 643206 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.37;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1487,156,0 chrXV 643346 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.92;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1729,186,0 chrXV 643604 . G A 1759 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;DP=80;Dels=0.00;FS=3.239;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.444;QD=21.99;ReadPosRankSum=1.555;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1792,195,0 chrXV 643871 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.1444;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.47;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1763,189,0 chrXV 643999 . A G 1230 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.78;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1263,141,0 chrXV 644421 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7486;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.33;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1774,198,0 chrXV 644459 . C G 1542 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.13;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1575,171,0 chrXV 644486 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.63;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1682,192,0 chrXV 644536 . A G 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=2.988;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.270;QD=19.11;ReadPosRankSum=1.629;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1887,210,0 chrXV 644548 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.91;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2082,225,0 chrXV 644578 . C T 2210 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.56;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2243,237,0 chrXV 644790 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.36;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1849,204,0 chrXV 644937 . A G 2249 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.05;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2282,255,0 chrXV 644964 . T A 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=6.383;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.727;QD=21.85;ReadPosRankSum=1.594;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2240,240,0 chrXV 645045 . C T 2569 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.14;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2602,273,0 chrXV 645075 . C T 2889 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.4249;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.69;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2922,309,0 chrXV 645801 . G A 1272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.664;QD=24.94;ReadPosRankSum=-1.325;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1305,141,0 chrXV 645971 . A G 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.525;QD=20.27;ReadPosRankSum=1.680;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1371,156,0 chrXV 646140 . G A 2648 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.22;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2681,285,0 chrXV 646281 . T A 1779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.652;QD=23.10;ReadPosRankSum=1.687;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1812,195,0 chrXV 646392 . A C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.791;QD=20.08;ReadPosRankSum=0.834;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1700,189,0 chrXV 646578 . G A 1701 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.49;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1734,183,0 chrXV 646794 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.79;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1339,150,0 chrXV 646866 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1247,138,0 chrXV 646904 . A T 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.933;QD=21.86;ReadPosRankSum=1.679;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1476,156,0 chrXV 646997 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1257,141,0 chrXV 647201 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.31;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1272,141,0 chrXV 647253 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.02;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1134,120,0 chrXV 647541 . G A 1122 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.44;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1155,123,0 chrXV 647759 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8332;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.81;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2246,252,0 chrXV 647930 . A T 2263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=4.349;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.449;QD=23.09;ReadPosRankSum=1.697;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2296,249,0 chrXV 648168 . T G 1878 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.59;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1911,210,0 chrXV 648172 . T G 1748 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.40;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1781,198,0 chrXV 648204 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=16.00;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1345,144,0 chrXV 648663 . A G 3299.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.075;DP=154;Dels=0.00;FS=7.508;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.095;QD=21.42;ReadPosRankSum=4.065;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:6,147:154:99:3299,372,0 chrXV 648801 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.20;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1326,147,0 chrXV 649028 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.49;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1495,159,0 chrXV 649497 . A G 1204 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.89;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1237,141,0 chrXV 649752 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1362,147,0 chrXV 650571 . A G 2077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.405;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.506;QD=22.33;ReadPosRankSum=1.694;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2110,234,0 chrXV 650943 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.56;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2027,225,0 chrXV 650976 . T C 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.254;QD=21.51;ReadPosRankSum=1.692;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1904,213,0 chrXV 651060 . C A 1357 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.96;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1390,150,0 chrXV 651210 . C T 1414 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1447,153,0 chrXV 651516 . C T 417 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.13;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:450,51,0 chrXV 651549 . C T 435 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.73;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:54:468,54,0 chrXV 651690 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.35;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1226,135,0 chrXV 651798 . G A 110.26 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-5.630e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:15:143,15,0 chrXV 652283 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.10;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1641,183,0 chrXV 652485 . C T 1406 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.03;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1439,153,0 chrXV 652513 . A G 1469 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.504;QD=19.33;ReadPosRankSum=1.687;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1502,168,0 chrXV 652865 . C A 1569 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.79;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1602,174,0 chrXV 652895 . G A 1114 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.57;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1147,129,0 chrXV 652952 . A T 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.93;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,162,0 chrXV 652958 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.56;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1462,159,0 chrXV 653138 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.67;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1482,165,0 chrXV 653186 . A T 1305 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9470;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.17;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1338,147,0 chrXV 653363 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.30;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1862,210,0 chrXV 653435 . A G 1593 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.702;QD=21.53;ReadPosRankSum=1.685;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1626,177,0 chrXV 653618 . C T 1328 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.25;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1361,144,0 chrXV 653625 . A G 1267 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.63;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1300,141,0 chrXV 653627 . A G 1199 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.63;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1232,138,0 chrXV 653702 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.02;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1783,192,0 chrXV 653732 . A G 2061 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.2824;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.08;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2094,231,0 chrXV 653896 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.36;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1978,210,0 chrXV 653929 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.20;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1770,198,0 chrXV 653975 . A T 2191 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.27;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2224,243,0 chrXV 654602 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.33;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1591,183,0 chrXV 654698 . A G 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.1038;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.571;QD=18.45;ReadPosRankSum=1.605;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1380,153,0 chrXV 654734 . G A 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=72;Dels=0.00;FS=5.149;HaplotypeScore=6.2840;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.636;QD=19.10;ReadPosRankSum=1.684;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1408,153,0 chrXV 654809 . T A 1605 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.26;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1638,183,0 chrXV 655035 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.90;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,126,0 chrXV 655064 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.63;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1188,129,0 chrXV 655070 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.47;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1143,126,0 chrXV 655103 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.83;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1104,120,0 chrXV 655223 . A G 1320 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.64;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1353,150,0 chrXV 655286 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=25.56;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1720,186,0 chrXV 655583 . T C 1102 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.33;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1135,126,0 chrXV 655592 . A G 1076 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=16.30;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:66:99:1109,123,0 chrXV 655599 . A G 1133 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=16.91;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1166,132,0 chrXV 655671 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.45;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1685,189,0 chrXV 655685 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.50;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1833,210,0 chrXV 656165 . T G 2264 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.34;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2297,261,0 chrXV 656264 . G T 1737 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0389;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.27;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1770,186,0 chrXV 656389 . C T 1003 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.00;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1036,123,0 chrXV 656534 . T C 1833 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.50;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1866,204,0 chrXV 656567 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.37;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1459,156,0 chrXV 656602 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.57;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1207,132,0 chrXV 656825 . T G 1409 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=20.72;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1442,159,0 chrXV 656851 . G C 1105 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=19.05;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1138,129,0 chrXV 656854 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=19.35;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1078,117,0 chrXV 656887 . A G 600 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=16.67;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:633,69,0 chrXV 656906 . A G 408 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=12.75;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:48:441,48,0 chrXV 656909 . G C 454 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=12.61;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:487,54,0 chrXV 656944 . A G 703 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.57;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:736,81,0 chrXV 656980 . C A 1024 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.32;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1057,114,0 chrXV 657104 . A G 65.51 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=11.4734;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=1.77;SB=-2.895e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:12:98,12,0 chrXV 657129 . C T 637 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=10.27;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:72:670,72,0 chrXV 657201 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9995;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.67;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1321,141,0 chrXV 657204 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=5.9995;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=18.74;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1345,147,0 chrXV 657269 . T A 1710 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4627;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=20.85;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1743,183,0 chrXV 657752 . C T 2614 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=20.4801;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.22;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2647,291,0 chrXV 658010 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=19.39;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1894,201,0 chrXV 658022 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.11;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,94:97:99:1596,177,0 chrXV 658040 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.07;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1569,174,0 chrXV 658097 . A G 2035 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.50;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2068,231,0 chrXV 658645 . A G 2521 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.34;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2554,291,0 chrXV 658711 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.7801;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.03;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2866,306,0 chrXV 658744 . G A 2456 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.9527;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.81;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2489,279,0 chrXV 660208 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.03;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1645,180,0 chrXV 660741 . A G 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;DP=87;Dels=0.00;FS=2.846;HaplotypeScore=4.8690;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.536;QD=17.52;ReadPosRankSum=1.464;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:2,83:87:99:1557,153,0 chrXV 660805 . G A 2013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.780;QD=21.41;ReadPosRankSum=0.933;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2046,199,0 chrXV 661048 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3944;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.53;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1745,189,0 chrXV 661255 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.01;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1861,207,0 chrXV 661543 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.07;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1888,201,0 chrXV 661998 . T C 705 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=19.58;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:738,84,0 chrXV 662174 . T C 1063 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1096,123,0 chrXV 662208 . C A 1013 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1046,120,0 chrXV 662272 . C A 842 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.71;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:875,99,0 chrXV 662281 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.27;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:837,93,0 chrXV 663812 . C T 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.3308;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=0.99;SB=-1.648e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:6:53,6,0 chrXV 663915 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.26;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1564,165,0 chrXV 663919 . C G 1417 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.96;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1450,162,0 chrXV 664099 . T G 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:50,6,0 chrXV 664107 . T A 82.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.31;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:115,12,0 chrXV 664116 . C T 109.26 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.93;SB=-1.141e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:15:142,15,0 chrXV 664118 . G T 118.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.74;SB=-9.707e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:151,18,0 chrXV 664132 . A C 423 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=12.82;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:456,51,0 chrXV 664181 . G T 1623 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.79;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1656,177,0 chrXV 664333 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=16.1417;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.11;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1982,216,0 chrXV 664473 . T C 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;MQRankSum=-0.100;QD=21.91;ReadPosRankSum=1.692;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1939,213,0 chrXV 664814 . T A 48.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.13;MQ0=2;MQRankSum=0.736;QD=6.03;ReadPosRankSum=-0.736;SB=-2.713e+00 GT:AD:DP:GQ:PL 0/1:3,5:8:10:78,0,10 chrXV 665469 . T A 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=4.216;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;MQRankSum=0.105;QD=21.77;ReadPosRankSum=1.522;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1470,162,0 chrXV 666010 . G A 881 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.02;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:914,96,0 chrXV 666379 . A G 1344 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.00;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1377,150,0 chrXV 666502 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.33;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1377,147,0 chrXV 666572 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.04;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1569,165,0 chrXV 666607 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.41;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1547,162,0 chrXV 666884 . T C 1420 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=80;Dels=0.00;FS=2.997;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.447;QD=17.75;ReadPosRankSum=2.327;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1453,162,0 chrXV 667729 . G C 49.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=9.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:82,9,0 chrXV 668080 . A T 1401 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=24.16;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1434,153,0 chrXV 668250 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.04;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1807,201,0 chrXV 668816 . T C 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=3.057;HaplotypeScore=5.3810;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;MQRankSum=-1.766;QD=18.17;ReadPosRankSum=2.340;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1668,195,0 chrXV 668833 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=18.87;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1599,171,0 chrXV 668837 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.9120;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;QD=18.22;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1472,165,0 chrXV 668880 . G A 1098 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=15.46;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1131,123,0 chrXV 669239 . T C 2218 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.75;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2251,255,0 chrXV 669462 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2238;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.82;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1572,171,0 chrXV 669720 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.65;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1726,186,0 chrXV 669828 . A G 1314 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.27;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1347,147,0 chrXV 670050 . G T 1328 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.82;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1361,147,0 chrXV 670051 . C A 1287 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.93;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1320,144,0 chrXV 670150 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.8094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.17;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1586,177,0 chrXV 670200 . C T 2149 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.62;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2182,237,0 chrXV 670245 . T G 1937 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.06;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1970,222,0 chrXV 670328 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.04;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1642,186,0 chrXV 670439 . A T 104.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=89;Dels=0.00;FS=14.025;HaplotypeScore=82.9627;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=-2.239;QD=1.17;ReadPosRankSum=2.648;SB=-7.893e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:15:137,15,0 chrXV 670513 . C A 2150 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.12;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2183,237,0 chrXV 670735 . G A 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DP=97;Dels=0.00;FS=14.458;HaplotypeScore=16.6889;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=0.771;QD=0.18;ReadPosRankSum=-5.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,20:97:47:47,0,368 chrXV 670862 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.50;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1151,129,0 chrXV 670894 . A T 871 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.77;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:904,99,0 chrXV 670961 . T A 1032 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.85;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1065,114,0 chrXV 671235 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7565;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.03;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2199,243,0 chrXV 671302 . T A 1569 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.86;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1602,171,0 chrXV 671534 . A G 3335.01 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.2303;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.70;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:3335,369,0 chrXV 671818 . A G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.503;DP=121;Dels=0.00;FS=4.296;HaplotypeScore=13.3461;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.503;QD=18.85;ReadPosRankSum=0.959;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:2314,255,0 chrXV 672196 . C A 1318 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.56;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1351,144,0 chrXV 672202 . T C 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=-0.099;QD=16.61;ReadPosRankSum=1.683;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1196,135,0 chrXV 672316 . A G 1792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.941;QD=19.27;ReadPosRankSum=1.694;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1825,204,0 chrXV 672347 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=16.94;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1642,186,0 chrXV 672370 . T C 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=102;Dels=0.00;FS=6.045;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.480;QD=16.71;ReadPosRankSum=2.929;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:3,96:102:99:1737,189,0 chrXV 672392 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.98;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1798,195,0 chrXV 672638 . A G 2033 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2896;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.10;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2066,234,0 chrXV 672740 . A C 1721 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.95;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1754,198,0 chrXV 672776 . C T 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.010;QD=24.64;ReadPosRankSum=-0.337;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1856,195,0 chrXV 673058 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.86;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1337,141,0 chrXV 673284 . T G 912 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=17.88;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:945,102,0 chrXV 673291 . A T 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=4.314;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;MQRankSum=1.668;QD=15.20;ReadPosRankSum=-1.155;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:96:869,96,0 chrXV 673296 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=16.92;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:913,102,0 chrXV 673312 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.21;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:816,93,0 chrXV 673509 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.24;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:995,111,0 chrXV 673570 . T C 652 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.03;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:685,75,0 chrXV 673605 . A G 482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;MQRankSum=-0.365;QD=12.68;ReadPosRankSum=1.550;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:57:515,57,0 chrXV 673607 . T G 542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=40;Dels=0.00;FS=5.546;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.181;QD=13.55;ReadPosRankSum=2.824;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:3,37:40:66:575,66,0 chrXV 673674 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=14.28;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1047,117,0 chrXV 673675 . A G 1116 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=15.29;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1149,129,0 chrXV 674074 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.52;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1595,177,0 chrXV 674206 . C A 696 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.33;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:78:729,78,0 chrXV 674210 . T C 642 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.000;QD=18.88;ReadPosRankSum=1.631;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:72:675,72,0 chrXV 674212 . T G 638 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.76;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:72:671,72,0 chrXV 674227 . A G 675 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=17.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:39:81:708,81,0 chrXV 674300 . G A 591 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.38;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:624,72,0 chrXV 674308 . A G 551 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.74;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:66:584,66,0 chrXV 674309 . G C 555 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.32;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:588,66,0 chrXV 674364 . G A 651 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.69;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:72:684,72,0 chrXV 674526 . C G 1461 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.49;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1494,165,0 chrXV 675063 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.98;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1018,117,0 chrXV 675258 . G A 581 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:614,66,0 chrXV 675376 . A G 568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.158;QD=16.71;ReadPosRankSum=1.628;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:1,32:34:69:601,69,0 chrXV 675643 . A T 889 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.79;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:922,96,0 chrXV 675665 . A T 1066 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.38;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1099,120,0 chrXV 675701 . T C 1172 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=9.853;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=1.726;QD=19.86;ReadPosRankSum=2.365;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1205,132,0 chrXV 675894 . C G 1762 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.14;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1795,198,0 chrXV 675959 . A C 695 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.42;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:728,81,0 chrXV 675995 . G T 1099 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1132,123,0 chrXV 676094 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=22.15;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:919,102,0 chrXV 676100 . C T 908 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.18;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:941,105,0 chrXV 676127 . G A 1029 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.42;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1062,120,0 chrXV 676463 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.83;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1296,144,0 chrXV 676532 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.05;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2084,225,0 chrXV 677126 . C G 1812 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.32;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1845,210,0 chrXV 677201 . T C 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;DP=131;Dels=0.00;FS=5.288;HaplotypeScore=17.2915;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.569;QD=18.71;ReadPosRankSum=3.364;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:4,127:131:99:2484,279,0 chrXV 677289 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.13;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,79:82:99:1438,153,0 chrXV 677294 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.68;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1090,120,0 chrXV 677365 . C T 1316 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.32;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1349,144,0 chrXV 677846 . T A 2597 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.4404;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.46;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2630,285,0 chrXV 677977 . G A 996 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.64;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1029,111,0 chrXV 678070 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.98;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:932,102,0 chrXV 678100 . C G 1332 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.84;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1365,150,0 chrXV 678625 . A T 2038 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.55;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2071,222,0 chrXV 679055 . G A 898 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.63;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:931,102,0 chrXV 679088 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:691,78,0 chrXV 679794 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.01;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1714,183,0 chrXV 679983 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1404,150,0 chrXV 680922 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.25;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1190,126,0 chrXV 681204 . T A 374 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:407,42,0 chrXV 681705 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.66;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2027,225,0 chrXV 682563 . C A 2758 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.55;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,124:128:99:2791,309,0 chrXV 682629 . C A 2358 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=5.419;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=1.458;QD=23.12;ReadPosRankSum=0.703;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2391,264,0 chrXV 682723 . T G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.644;DP=88;Dels=0.00;FS=2.598;HaplotypeScore=6.7463;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.564;QD=20.87;ReadPosRankSum=2.782;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:3,85:88:99:1870,210,0 chrXV 682752 . T A 1584 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.05;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1617,171,0 chrXV 682813 . G C 1705 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=20.30;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1738,192,0 chrXV 682818 . C A 1459 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.79;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1492,165,0 chrXV 682956 . T C 1851 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.5430;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=15.82;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,113:117:99:1884,210,0 chrXV 682961 . C T 1546 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.5155;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;MQRankSum=-0.219;QD=14.31;ReadPosRankSum=-1.026;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:1,103:108:99:1579,177,0 chrXV 682964 . T A 1650 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=16.50;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1683,177,0 chrXV 682981 . G T 1765 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4250;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.50;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1798,192,0 chrXV 683128 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8713;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.78;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1992,216,0 chrXV 683158 . G A 2231 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.99;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2264,246,0 chrXV 683302 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.82;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1886,201,0 chrXV 683351 . T C 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.214;QD=20.84;ReadPosRankSum=-0.261;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1554,153,0 chrXV 683474 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=9.5646;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.27;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1397,150,0 chrXV 683731 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.19;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1406,153,0 chrXV 683812 . T G 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=49;Dels=0.00;FS=3.590;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.155;QD=15.53;ReadPosRankSum=1.516;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:90:794,90,0 chrXV 684557 . C T 3103 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.5220;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.27;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3136,345,0 chrXV 684893 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.00;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1534,174,0 chrXV 684920 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=94;Dels=0.00;FS=14.353;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.328;QD=20.15;ReadPosRankSum=3.362;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:4,90:94:99:1927,213,0 chrXV 686417 . T C 1174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=56;Dels=0.00;FS=2.915;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.326;QD=20.96;ReadPosRankSum=2.360;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,53:56:99:1207,135,0 chrXV 686985 . G A 1097 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.95;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1130,120,0 chrXV 688168 . C T 2107 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.1168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2140,240,0 chrXV 688433 . T A 1718 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.91;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1751,189,0 chrXV 688719 . T C 2222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.233;DP=126;Dels=0.00;FS=18.220;HaplotypeScore=3.8234;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.505;QD=17.63;ReadPosRankSum=4.417;SB=-1.521e+03 GT:AD:DP:GQ:PL 1/1:7,118:126:99:2255,249,0 chrXV 688982 . T C 1848 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.27;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1881,210,0 chrXV 689641 . T C 2347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=120;Dels=0.00;FS=6.130;HaplotypeScore=16.8087;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.581;QD=19.56;ReadPosRankSum=2.872;SB=-1.340e+03 GT:AD:DP:GQ:PL 1/1:3,115:120:99:2380,270,0 chrXV 690980 . G C 1556 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.22;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1589,180,0 chrXV 691291 . T A 1789 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.54;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1822,198,0 chrXV 691396 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.12;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2400,258,0 chrXV 691507 . T C 2533 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.90;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2566,282,0 chrXV 691977 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.41;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1414,150,0 chrXV 692038 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.08;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1425,159,0 chrXV 692057 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.55;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1753,189,0 chrXV 692169 . A C 1734 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0561;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.67;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1767,198,0 chrXV 692736 . T G 1501 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.75;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1534,174,0 chrXV 692737 . T C 1516 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.21;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1549,171,0 chrXV 693081 . C A 2202 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.2869;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.47;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2235,234,0 chrXV 693300 . G C 1832 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.06;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1865,207,0 chrXV 693526 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1473;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.06;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1818,201,0 chrXV 693793 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.01;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1662,183,0 chrXV 693898 . A G 1250 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.84;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1283,141,0 chrXV 693923 . T G 1086 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.11;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1119,126,0 chrXV 693989 . A G 1204 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.61;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1237,135,0 chrXV 694061 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.75;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1338,144,0 chrXV 694220 . C A 996 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.60;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1029,111,0 chrXV 694231 . C T 993 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=16.28;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1026,111,0 chrXV 694271 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.33;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1395,147,0 chrXV 694301 . G C 1307 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.15;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1340,147,0 chrXV 694394 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.63;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1262,132,0 chrXV 694427 . C G 1006 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.96;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1039,114,0 chrXV 694439 . G A 1036 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.56;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1069,114,0 chrXV 694471 . T C 997 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.90;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1030,114,0 chrXV 694591 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.29;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1883,201,0 chrXV 694619 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.36;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1742,192,0 chrXV 695116 . T C 1926 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.71;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1959,216,0 chrXV 695150 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.55;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1490,165,0 chrXV 695231 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=80;Dels=0.00;FS=3.349;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.689;QD=21.71;ReadPosRankSum=0.909;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1770,195,0 chrXV 695843 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.43;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2134,231,0 chrXV 695870 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.75;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1475,159,0 chrXV 696122 . G T 1477 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.18;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1510,162,0 chrXV 696143 . G T 1364 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.94;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1397,150,0 chrXV 696273 . T C 1224 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.47;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1257,141,0 chrXV 696614 . C T 1248 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.20;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1281,135,0 chrXV 696650 . A G 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4627;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.328;QD=18.96;ReadPosRankSum=1.639;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1436,159,0 chrXV 696980 . A T 1282 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.19;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1315,144,0 chrXV 697548 . A G 1424 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.51;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1457,159,0 chrXV 697884 . G C 1256 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.59;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1289,144,0 chrXV 697906 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8686;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.33;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1718,183,0 chrXV 698025 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.57;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1520,165,0 chrXV 698112 . A T 1904 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.14;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1937,207,0 chrXV 698124 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.49;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1922,210,0 chrXV 698306 . T C 798 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=67;Dels=0.00;FS=2.712;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.475;QD=11.91;ReadPosRankSum=1.918;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,64:67:96:831,96,0 chrXV 698579 . T G 1492 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.72;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1525,168,0 chrXV 698616 . A G 1407 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.346;QD=20.10;ReadPosRankSum=1.683;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1440,159,0 chrXV 699602 . A G 2138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.069;QD=22.74;ReadPosRankSum=1.658;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2171,240,0 chrXV 700142 . C G 1296 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.64;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1329,147,0 chrXV 700484 . C T 599 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.97;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:632,69,0 chrXV 700514 . A G 755 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.41;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:90:788,90,0 chrXV 700551 . C T 1125 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.45;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1158,123,0 chrXV 700856 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.52;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:2166,240,0 chrXV 700968 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.17;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1621,183,0 chrXV 701028 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.872;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.242;QD=20.38;ReadPosRankSum=1.697;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2071,231,0 chrXV 701347 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=23.72;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2002,216,0 chrXV 701442 . G T 1423 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.24;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1456,153,0 chrXV 701450 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.10;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1435,162,0 chrXV 701574 . G T 2631 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.55;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2664,285,0 chrXV 701599 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.36;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2236,255,0 chrXV 702217 . A C 1299 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.39;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1332,147,0 chrXV 702223 . A C 1118 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=15.97;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1151,126,0 chrXV 702337 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.45;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1620,180,0 chrXV 702338 . T A 1626 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.91;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1659,183,0 chrXV 702475 . T C 1969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.966;QD=20.73;ReadPosRankSum=1.623;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2002,225,0 chrXV 702546 . G T 1772 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=19.47;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1805,189,0 chrXV 702553 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=19.55;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1812,189,0 chrXV 702674 . C A 1286 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.41;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1319,138,0 chrXV 702890 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.93;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2565,291,0 chrXV 702913 . T A 2943 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.30;SB=-1.645e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2976,321,0 chrXV 702970 . A G 2539 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.47;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2572,285,0 chrXV 703059 . T C 908 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9453;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.976;QD=16.51;ReadPosRankSum=-0.094;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:941,105,0 chrXV 703061 . C T 932 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9453;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.176;QD=16.64;ReadPosRankSum=-0.062;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:965,102,0 chrXV 703091 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.41;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1008,108,0 chrXV 703124 . C G 995 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.9514;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=17.16;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1028,114,0 chrXV 703302 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.11;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2288,240,0 chrXV 703324 . A G 1443 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=86;Dels=0.00;FS=3.032;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.203;QD=16.78;ReadPosRankSum=2.392;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1476,165,0 chrXV 703419 . A G 1644 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.193;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.495;QD=22.52;ReadPosRankSum=1.542;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1677,186,0 chrXV 703690 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=21.95;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1789,195,0 chrXV 709391 . A G 179.03 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.38;MQ0=27;QD=2.84;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,63:63:24:212,24,0 chrXV 709398 . C T 181.03 filter AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.96;MQ0=30;QD=2.74;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,66:66:24:214,24,0 chrXV 709409 . A C 154.06 filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=37;QD=2.14;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:1,71:72:21:187,21,0 chrXV 709416 . T C 197.01 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=43;QD=2.56;SB=-2.380e-02 GT:AD:DP:GQ:PL 1/1:1,76:77:27:230,27,0 chrXV 709436 . A T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=13.45;MQ0=62;MQRankSum=1.425;QD=0.26;ReadPosRankSum=0.323;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,50:94:54:54,0,157 chrXV 709696 . A G 782 filter AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=61;QD=6.26;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,125:125:96:815,96,0 chrXV 709698 . G A 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;DP=125;Dels=0.00;FS=6.596;HaplotypeScore=1.9810;MLEAC=1;MLEAF=0.500;MQ=18.67;MQ0=61;MQRankSum=-0.548;QD=1.54;ReadPosRankSum=1.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,30:125:99:222,0,517 chrXV 709766 . T A 458.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DP=64;Dels=0.00;FS=8.164;HaplotypeScore=12.0362;MLEAC=1;MLEAF=0.500;MQ=25.68;MQ0=15;MQRankSum=-1.096;QD=7.16;ReadPosRankSum=-2.949;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:20,44:64:99:488,0,149 chrXV 710181 . G A 389 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=18.52;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:422,45,0 chrXV 710182 . A T 394 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=18.76;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:45:427,45,0 chrXV 710305 . A G 958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.270;DP=64;Dels=0.00;FS=2.466;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;MQRankSum=1.048;QD=14.97;ReadPosRankSum=2.096;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:991,111,0 chrXV 710553 . C T 738 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.06;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:84:771,84,0 chrXV 710606 . T A 503 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=15.72;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:536,57,0 chrXV 710609 . T C 600 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.65;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:69:633,69,0 chrXV 710699 . G A 969 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.53;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1002,105,0 chrXV 711252 . A G 1162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5997;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.308;QD=23.71;ReadPosRankSum=-1.520;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1195,132,0 chrXV 711322 . T C 1400 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.14;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1433,162,0 chrXV 711503 . G C 1350 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=25.00;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1383,150,0 chrXV 711533 . G A 718 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=16.32;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:81:751,81,0 chrXV 711540 . A C 776 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=17.24;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:809,90,0 chrXV 711604 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.60;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1461,156,0 chrXV 711743 . C A 2135 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.01;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2168,243,0 chrXV 712214 . C G 1927 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1304;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.66;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1960,216,0 chrXV 712306 . C T 1747 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.80;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1780,192,0 chrXV 712481 . T C 819 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2967;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.38;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:852,99,0 chrXV 712727 . C A 200.01 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=7.41;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:233,27,0 chrXV 712794 . C T 2638 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=26.12;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2671,285,0 chrXV 712982 . G A 1069 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.24;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1102,120,0 chrXV 713039 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.94;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1309,141,0 chrXV 713054 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.40;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1358,153,0 chrXV 713264 . A T 1951 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4820;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.44;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1984,216,0 chrXV 713325 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=13.77;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1052,111,0 chrXV 713345 . A G 1015 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.652;QD=13.18;ReadPosRankSum=1.597;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1048,117,0 chrXV 713393 . T C 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.563;QD=15.65;ReadPosRankSum=1.690;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1363,150,0 chrXV 713519 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.01;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1828,204,0 chrXV 713612 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.29;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2173,240,0 chrXV 713926 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1689,186,0 chrXV 714100 . A G 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=1.556;QD=20.76;ReadPosRankSum=1.674;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1258,138,0 chrXV 714243 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1784,195,0 chrXV 714318 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.32;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1291,138,0 chrXV 714391 . G C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.655;DP=47;Dels=0.00;FS=5.740;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.808;QD=21.51;ReadPosRankSum=0.115;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:1,44:47:99:1044,117,0 chrXV 714566 . A G 1409 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.85;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1442,159,0 chrXV 714582 . T A 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.155;DP=71;Dels=0.00;FS=5.389;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.436;QD=18.48;ReadPosRankSum=3.279;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:4,67:71:99:1345,128,0 chrXV 714848 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.67;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1094,114,0 chrXV 715193 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:913,96,0 chrXV 715572 . A T 1672 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.22;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1705,180,0 chrXV 715611 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.87;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1794,189,0 chrXV 715653 . C A 1716 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.88;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1749,186,0 chrXV 715665 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.78;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1601,168,0 chrXV 715815 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.70;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1894,213,0 chrXV 715851 . A T 2213 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.05;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2246,243,0 chrXV 716103 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2282,252,0 chrXV 716400 . C T 2775 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.5254;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=21.51;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2808,306,0 chrXV 716635 . C A 1641 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=23.44;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1674,186,0 chrXV 716951 . G C 2262 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=22.40;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2295,249,0 chrXV 717052 . C T 2472 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.77;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2505,267,0 chrXV 717193 . T A 2736 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.19;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2769,291,0 chrXV 717277 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.7598;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.43;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1810,201,0 chrXV 717703 . T C 2602 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.4165;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.15;SB=-1.566e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2635,300,0 chrXV 718015 . A T 2839 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-1.591e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2872,309,0 chrXV 718180 . T C 2619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.8839;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.160;QD=22.01;ReadPosRankSum=1.674;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2652,294,0 chrXV 718406 . G A 2091 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.78;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2124,234,0 chrXV 718599 . G A 1384 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.66;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1417,150,0 chrXV 719433 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.91;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1659,183,0 chrXV 720426 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=13.1800;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=13.80;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2131,234,0 chrXV 720674 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.21;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1341,150,0 chrXV 720752 . A G 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.858;QD=17.68;ReadPosRankSum=1.701;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,110:113:99:2031,231,0 chrXV 720799 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1758,195,0 chrXV 721121 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3071;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.43;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2235,234,0 chrXV 721240 . A T 1627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.143;QD=19.14;ReadPosRankSum=-1.080;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1660,177,0 chrXV 721322 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.12;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1762,195,0 chrXV 721661 . A C 1028 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.87;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1061,120,0 chrXV 721768 . C A 1191 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8114;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=15.47;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1224,135,0 chrXV 721815 . C T 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6622;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;MQRankSum=-0.144;QD=10.71;ReadPosRankSum=-0.830;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1061,114,0 chrXV 721920 . A G 2796 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=7.231;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.732;QD=25.19;ReadPosRankSum=1.701;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2829,312,0 chrXV 721957 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.15;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2255,240,0 chrXV 722033 . A C 1781 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.54;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1814,201,0 chrXV 722554 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.63;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1461,168,0 chrXV 722718 . A C 1670 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.98;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1703,189,0 chrXV 722724 . A G 1573 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.29;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1606,180,0 chrXV 723226 . A C 1526 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.61;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1559,174,0 chrXV 723942 . T C 1875 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.95;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1908,207,0 chrXV 724989 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1370,153,0 chrXV 725534 . T A 1893 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.01;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1926,207,0 chrXV 725848 . G T 2126 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.62;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2159,228,0 chrXV 725969 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.07;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1980,222,0 chrXV 725984 . C G 1872 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.00;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1905,210,0 chrXV 725988 . C T 1983 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.63;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2016,213,0 chrXV 726044 . A T 1524 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=15.39;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1557,171,0 chrXV 726404 . T C 1259 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.08;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1292,144,0 chrXV 726448 . T C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=5.185;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.735;QD=21.25;ReadPosRankSum=1.680;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1457,162,0 chrXV 726499 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1449,159,0 chrXV 726893 . G A 1525 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1558,174,0 chrXV 727008 . G A 1812 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.49;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1845,195,0 chrXV 727355 . G C 992 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.37;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1025,114,0 chrXV 727477 . A G 1534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.025;QD=22.23;ReadPosRankSum=1.682;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1567,171,0 chrXV 727823 . C G 1526 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.12;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1559,174,0 chrXV 727969 . G A 1408 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1441,153,0 chrXV 728063 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.02;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1609,168,0 chrXV 728105 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.99;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1792,198,0 chrXV 728123 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.16;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1747,198,0 chrXV 728288 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.54;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1543,165,0 chrXV 729128 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.68;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1575,177,0 chrXV 729380 . A T 2649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.701;QD=24.08;ReadPosRankSum=1.701;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2682,282,0 chrXV 729585 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.464;QD=19.83;ReadPosRankSum=1.683;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1441,159,0 chrXV 729726 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.71;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1698,186,0 chrXV 729728 . G T 1713 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=19.03;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1746,186,0 chrXV 729765 . A C 908 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=12.27;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:941,105,0 chrXV 729766 . G T 891 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=12.04;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:924,102,0 chrXV 729770 . T C 838 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=11.97;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:871,96,0 chrXV 729812 . C T 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=60;Dels=0.00;FS=2.702;HaplotypeScore=4.5958;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-0.762;QD=16.08;ReadPosRankSum=-1.297;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:998,105,0 chrXV 729813 . G C 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3298;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;MQRankSum=-0.693;QD=14.72;ReadPosRankSum=-1.213;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:916,105,0 chrXV 729831 . A G 852 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=16.38;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:885,99,0 chrXV 729917 . T A 1472 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.33;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1505,162,0 chrXV 729918 . T C 1501 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=21.44;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1534,171,0 chrXV 729943 . A T 2141 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.41;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2174,234,0 chrXV 730011 . C T 3620.01 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=24.97;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:3620,381,0 chrXV 730479 . G A 3305.01 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.48;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3305,348,0 chrXV 730763 . A G 1829 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.27;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1862,204,0 chrXV 730821 . A G 2249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.017;QD=21.83;ReadPosRankSum=1.698;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2282,249,0 chrXV 731874 . A T 2640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;DP=119;Dels=0.00;FS=9.481;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=2.094;QD=22.18;ReadPosRankSum=2.941;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:3,116:119:99:2673,288,0 chrXV 732006 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.96;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1360,147,0 chrXV 732393 . C T 2467 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.84;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2500,273,0 chrXV 732609 . A G 2478 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.55;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2511,282,0 chrXV 732852 . C T 2366 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2399,255,0 chrXV 732999 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.20;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1770,189,0 chrXV 733101 . C T 1852 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.31;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1885,198,0 chrXV 733293 . T C 2246 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.40;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2279,249,0 chrXV 733347 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.51;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1883,207,0 chrXV 733380 . T C 1429 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.71;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1462,162,0 chrXV 733385 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.80;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1330,150,0 chrXV 733489 . A G 1055 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.54;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1088,120,0 chrXV 733608 . A G 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.453;QD=20.29;ReadPosRankSum=1.692;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1798,198,0 chrXV 733667 . C G 1711 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.80;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1744,192,0 chrXV 733951 . T C 2019 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.60;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2052,225,0 chrXV 733953 . A G 1919 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.99;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1952,216,0 chrXV 734077 . T C 1539 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.52;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1572,174,0 chrXV 734684 . C T 1323 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.67;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1356,144,0 chrXV 735107 . T A 2440 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.40;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2473,258,0 chrXV 735517 . G A 2484 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6289;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.41;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2517,276,0 chrXV 735547 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.79;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2084,222,0 chrXV 735678 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.477;QD=21.53;ReadPosRankSum=1.579;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1497,168,0 chrXV 735877 . G T 1312 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.88;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1345,147,0 chrXV 735907 . A G 923 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=14.65;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:956,108,0 chrXV 735970 . A G 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.516;QD=17.33;ReadPosRankSum=1.689;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1437,159,0 chrXV 736006 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=16.09;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1079,120,0 chrXV 736467 . A G 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.982;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.289;QD=22.78;ReadPosRankSum=1.328;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1400,137,0 chrXV 736963 . C T 2173 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.70;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2206,243,0 chrXV 737103 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6184;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.77;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1965,210,0 chrXV 737281 . A G 1923 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.10;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1956,210,0 chrXV 737295 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.24;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1774,195,0 chrXV 737529 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.10;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1845,204,0 chrXV 737961 . A T 1084 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.07;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1117,123,0 chrXV 738026 . T C 1103 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.08;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1136,123,0 chrXV 738093 . C G 1589 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.08;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1622,180,0 chrXV 738277 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1632,174,0 chrXV 738454 . C T 827 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.98;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:90:860,90,0 chrXV 738717 . T A 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=11.461;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.825;QD=18.12;ReadPosRankSum=1.650;SB=-4.801e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:84:794,84,0 chrXV 739134 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=11.4240;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.09;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1910,204,0 chrXV 739347 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.60;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1588,177,0 chrXV 739494 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1639,174,0 chrXV 740148 . G A 1508 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7156;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.38;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1541,168,0 chrXV 740202 . A G 1253 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.37;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1286,147,0 chrXV 740490 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=19.20;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1204,126,0 chrXV 741440 . T C 1883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.232;QD=21.64;ReadPosRankSum=2.365;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1916,210,0 chrXV 741453 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.44;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1791,195,0 chrXV 742127 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.51;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1631,180,0 chrXV 742150 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.10;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1380,156,0 chrXV 742253 . G A 1128 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.62;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1161,129,0 chrXV 742344 . G C 751 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=15.65;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:784,90,0 chrXV 742634 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.71;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1532,168,0 chrXV 743206 . G C 1987 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.10;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2020,225,0 chrXV 743656 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1973;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.35;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2275,243,0 chrXV 744303 . C A 1829 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.15;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1862,195,0 chrXV 744491 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.5977;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.00;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1275,141,0 chrXV 744503 . T C 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.526;QD=19.30;ReadPosRankSum=2.911;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:3,76:79:99:1558,168,0 chrXV 744578 . A G 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.846;QD=15.97;ReadPosRankSum=1.692;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1406,162,0 chrXV 744580 . T C 1387 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.32;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1420,165,0 chrXV 744706 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1367,147,0 chrXV 744769 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.25;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1823,198,0 chrXV 744847 . C T 2534 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.03;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2567,279,0 chrXV 744871 . A G 2051 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.31;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2084,231,0 chrXV 744964 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=20.79;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1613,180,0 chrXV 744967 . G C 1548 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.50;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1581,174,0 chrXV 745114 . G T 962 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=14.36;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:995,111,0 chrXV 745180 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.84;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1460,156,0 chrXV 745192 . T C 1403 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=4.293;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.088;QD=15.94;ReadPosRankSum=1.692;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,85:88:99:1436,159,0 chrXV 745409 . A G 1054 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2426;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.08;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1087,120,0 chrXV 745446 . A C 1089 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.35;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1122,126,0 chrXV 745467 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=1.254;QD=20.98;ReadPosRankSum=1.673;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1271,144,0 chrXV 745547 . A T 2092 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.33;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2125,228,0 chrXV 745698 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.44;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1447,159,0 chrXV 745778 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.545;QD=18.34;ReadPosRankSum=1.685;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1390,153,0 chrXV 745929 . G A 1619 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=16.86;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1652,183,0 chrXV 746045 . C T 1391 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1424,153,0 chrXV 746189 . G T 1056 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.47;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1089,114,0 chrXV 746313 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.06;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1056,111,0 chrXV 746609 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=20.00;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1233,135,0 chrXV 746695 . C T 1903 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1936,204,0 chrXV 746845 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.53;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1745,198,0 chrXV 747091 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.420;QD=18.48;ReadPosRankSum=1.680;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1253,138,0 chrXV 747125 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.71;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1380,153,0 chrXV 747181 . T A 1943 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.03;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1976,216,0 chrXV 747315 . C T 1608 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.10;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1641,174,0 chrXV 747519 . G T 1832 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.34;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1865,201,0 chrXV 747612 . C G 1180 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.00;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1213,135,0 chrXV 747648 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1615,180,0 chrXV 747741 . A G 1997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.665;DP=99;Dels=0.00;FS=17.450;HaplotypeScore=9.6804;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.468;QD=20.17;ReadPosRankSum=3.584;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:5,93:99:99:2030,228,0 chrXV 747774 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.09;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2227,246,0 chrXV 748004 . A C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=2.133;QD=14.91;ReadPosRankSum=2.380;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1077,120,0 chrXV 748605 . T C 2205 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.73;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2238,249,0 chrXV 748655 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.19;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1507,171,0 chrXV 748713 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.95;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1416,162,0 chrXV 748737 . T G 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.309;QD=22.00;ReadPosRankSum=2.269;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1529,171,0 chrXV 748780 . A G 1398 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.84;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1431,159,0 chrXV 748819 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1474,165,0 chrXV 748866 . G T 1496 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.24;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1529,168,0 chrXV 748991 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.6051;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.517;QD=19.43;ReadPosRankSum=2.398;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:2,93:97:99:1918,210,0 chrXV 749608 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.55;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1734,192,0 chrXV 749636 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.39;SB=-1.116e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2001,210,0 chrXV 749731 . T C 1665 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.35;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1698,189,0 chrXV 750300 . A G 1707 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=79;Dels=0.00;FS=3.020;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.016;QD=21.61;ReadPosRankSum=2.387;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1740,192,0 chrXV 750644 . A G 1608 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0048;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.16;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1641,189,0 chrXV 751145 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.68;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1588,177,0 chrXV 751193 . T C 659 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=14.64;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,39:45:75:692,75,0 chrXV 751330 . C G 1393 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.33;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1426,159,0 chrXV 751374 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.4620;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.47;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1987,213,0 chrXV 751433 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1993;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=18.26;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1804,198,0 chrXV 751442 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.61;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1711,189,0 chrXV 751445 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=18.56;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1833,192,0 chrXV 751476 . T G 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=5.1682;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.122;QD=16.84;ReadPosRankSum=1.312;SB=-1.169e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1700,192,0 chrXV 751511 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=13.92;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1439,159,0 chrXV 751523 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=15.58;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1482,159,0 chrXV 751571 . C A 1711 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.44;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1744,189,0 chrXV 752064 . G A 2339 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.16;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2372,255,0 chrXV 752146 . A G 1310 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.628;QD=18.71;ReadPosRankSum=1.682;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1343,150,0 chrXV 752184 . A G 1204 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.12;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1237,141,0 chrXV 752228 . C G 914 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.65;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:947,105,0 chrXV 752247 . T C 814 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.09;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:847,93,0 chrXV 752248 . T C 817 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.57;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:850,93,0 chrXV 752415 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.05;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1777,201,0 chrXV 752538 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.81;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1490,165,0 chrXV 752580 . C T 1340 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.33;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1373,147,0 chrXV 752598 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.34;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1111,126,0 chrXV 752616 . G A 959 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.3068;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=15.47;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:992,114,0 chrXV 752721 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1476,165,0 chrXV 752751 . A G 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.732;QD=21.70;ReadPosRankSum=1.680;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1487,165,0 chrXV 753445 . C G 1074 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.52;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1107,123,0 chrXV 753645 . G A 2512 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.84;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2545,276,0 chrXV 753808 . T C 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.690;QD=21.15;ReadPosRankSum=2.374;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1408,156,0 chrXV 754003 . T G 2072 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.92;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2105,234,0 chrXV 754376 . T G 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=57;Dels=0.00;FS=6.577;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.195;QD=18.79;ReadPosRankSum=2.364;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1104,123,0 chrXV 754590 . A C 1603 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.66;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1636,186,0 chrXV 754721 . G A 1749 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.82;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1782,198,0 chrXV 754893 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.23;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1725,192,0 chrXV 754908 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.38;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1577,171,0 chrXV 755003 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=16.22;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1363,150,0 chrXV 755016 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=16.63;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1430,153,0 chrXV 755099 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=14.52;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1427,153,0 chrXV 755104 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=13.54;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1238,135,0 chrXV 755116 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=13.89;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1269,141,0 chrXV 755170 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=15.20;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1477,159,0 chrXV 755561 . A G 1767 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.602;QD=22.09;ReadPosRankSum=1.689;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1800,198,0 chrXV 755735 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5720;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.91;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1523,168,0 chrXV 756307 . A T 3665.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.652;QD=20.82;ReadPosRankSum=1.692;SB=-1.821e+03 GT:AD:DP:GQ:PL 1/1:1,175:176:99:3665,393,0 chrXV 756405 . C A 1635 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2179;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.21;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1668,186,0 chrXV 756425 . C G 1767 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.63;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1800,198,0 chrXV 756575 . G A 2452 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.96;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2485,261,0 chrXV 756630 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.90;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2207,234,0 chrXV 756728 . A G 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.604;DP=105;Dels=0.00;FS=16.139;HaplotypeScore=7.3883;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.302;QD=19.09;ReadPosRankSum=3.724;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:5,100:105:99:2037,225,0 chrXV 756913 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1554,171,0 chrXV 757291 . A C 1987 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.92;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2020,225,0 chrXV 757318 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.37;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2063,219,0 chrXV 757677 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.90;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2070,219,0 chrXV 757746 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.52;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1592,174,0 chrXV 757952 . C T 1585 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1618,171,0 chrXV 758539 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.11;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1382,156,0 chrXV 759277 . C A 2220 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.97;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2253,246,0 chrXV 759307 . C T 2222 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.64;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2255,237,0 chrXV 759410 . A G 979 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.40;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1012,114,0 chrXV 759629 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=17.57;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1052,117,0 chrXV 759919 . A G 1753 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.07;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1786,204,0 chrXV 759944 . C T 2245 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.63;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:2278,237,0 chrXV 760240 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.22;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2055,222,0 chrXV 760339 . G A 1218 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.03;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1251,138,0 chrXV 760354 . A G 1069 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=14.64;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1102,120,0 chrXV 760954 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.35;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1307,147,0 chrXV 761321 . C T 587 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=11.08;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:69:620,69,0 chrXV 762046 . A G 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=87;Dels=0.00;FS=2.963;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.411;QD=15.76;ReadPosRankSum=0.807;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1404,132,0 chrXV 762067 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.57;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1491,165,0 chrXV 762399 . T C 2633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.9573;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.206;QD=23.51;ReadPosRankSum=1.670;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2666,297,0 chrXV 762537 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.95;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1772,198,0 chrXV 762665 . T C 1552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=3.415;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.000;QD=17.24;ReadPosRankSum=1.694;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1585,174,0 chrXV 763568 . T G 1735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.328;QD=19.28;ReadPosRankSum=2.395;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1768,201,0 chrXV 763613 . C T 1561 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.81;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1594,171,0 chrXV 763657 . C T 1090 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.79;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1123,120,0 chrXV 763671 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.175;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.019;QD=16.25;ReadPosRankSum=1.579;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1154,126,0 chrXV 763679 . C G 1130 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.12;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1163,129,0 chrXV 763784 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.32;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1833,201,0 chrXV 763868 . T C 2410 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1789;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.284;QD=20.78;ReadPosRankSum=1.643;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2443,267,0 chrXV 763915 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.17;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1663,177,0 chrXV 763953 . T C 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-0.176;QD=15.33;ReadPosRankSum=1.682;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1091,123,0 chrXV 763970 . T C 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-0.840;QD=16.98;ReadPosRankSum=1.680;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1154,126,0 chrXV 763973 . A G 1068 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=16.18;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1101,123,0 chrXV 764062 . G A 1541 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1781;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.33;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1574,168,0 chrXV 764138 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=90;Dels=0.00;FS=10.752;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.157;QD=20.73;ReadPosRankSum=2.855;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1899,207,0 chrXV 764174 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.72;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1985,222,0 chrXV 764185 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.83;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,97:100:99:1916,213,0 chrXV 764224 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.3071;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.00;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1682,186,0 chrXV 764348 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.62;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1456,153,0 chrXV 764381 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.79;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1273,141,0 chrXV 764453 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2477;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.39;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1565,168,0 chrXV 764588 . A G 993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.186;QD=17.73;ReadPosRankSum=1.670;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1026,114,0 chrXV 764698 . G A 967 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.49;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1000,108,0 chrXV 764789 . C T 950 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.92;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:983,105,0 chrXV 764849 . C T 959 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.44;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:992,108,0 chrXV 764969 . T C 1571 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1604,177,0 chrXV 765269 . T C 2240 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=2.686;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.591;QD=21.96;ReadPosRankSum=2.401;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:2,100:102:99:2273,249,0 chrXV 765690 . A C 1533 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.90;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1566,174,0 chrXV 766370 . T C 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=3.352;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.364;QD=19.00;ReadPosRankSum=1.674;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2294,261,0 chrXV 766376 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.87;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2260,243,0 chrXV 766455 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.63;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1655,183,0 chrXV 766612 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.45;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1272,135,0 chrXV 766681 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.16;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1704,183,0 chrXV 766799 . G A 579 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=14.85;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:66:612,66,0 chrXV 766910 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.73;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1380,153,0 chrXV 766986 . T C 968 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.604;QD=22.51;ReadPosRankSum=1.652;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1001,114,0 chrXV 767082 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.33;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1096,117,0 chrXV 767093 . T G 814 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.28;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:96:847,96,0 chrXV 767237 . C A 1890 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.77;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1923,204,0 chrXV 767292 . A G 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.227;QD=21.24;ReadPosRankSum=1.660;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:2093,234,0 chrXV 767830 . C T 1680 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.00;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1713,183,0 chrXV 767859 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.7200;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.57;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1910,216,0 chrXV 767905 . T A 1766 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.07;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1799,192,0 chrXV 768090 . T C 1030 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.81;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1063,117,0 chrXV 768226 . A G 933 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=15.30;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:966,108,0 chrXV 768428 . G A 899 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.43;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:932,99,0 chrXV 768429 . T C 826 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.77;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:859,96,0 chrXV 768642 . T C 2640 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8163;MLEAC=2;MLEAF=1.00;MQ=62.43;MQ0=0;QD=23.57;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2673,294,0 chrXV 768822 . G C 1879 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.85;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1912,222,0 chrXV 769458 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.2518;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.58;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1854,201,0 chrXV 770027 . A T 1212 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.25;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1245,132,0 chrXV 770037 . T C 1055 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.44;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1088,117,0 chrXV 770068 . A G 875 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.83;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:908,99,0 chrXV 770094 . A C 979 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.58;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1012,111,0 chrXV 770118 . A C 1065 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.46;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1098,126,0 chrXV 770179 . T C 892 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=-0.163;QD=16.83;ReadPosRankSum=1.667;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:925,102,0 chrXV 770183 . G A 980 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=18.49;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1013,111,0 chrXV 770184 . G A 998 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=18.83;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,111,0 chrXV 770215 . T G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.206;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=1.763;QD=15.13;ReadPosRankSum=2.313;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:96:850,96,0 chrXV 770241 . A C 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.840;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=-0.979;QD=14.93;ReadPosRankSum=1.657;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:81:720,81,0 chrXV 770280 . A G 992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.866;QD=19.08;ReadPosRankSum=1.599;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1025,114,0 chrXV 770554 . T C 1014 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.13;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1047,117,0 chrXV 770734 . A G 2105 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2138,234,0 chrXV 771042 . G C 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.186;QD=22.16;ReadPosRankSum=0.873;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2736,306,0 chrXV 771180 . G A 1929 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7004;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.91;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1962,207,0 chrXV 771351 . T C 2390 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.11;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2423,270,0 chrXV 771765 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.36;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1621,174,0 chrXV 772708 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=16.5076;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.37;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2029,216,0 chrXV 772966 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=96;Dels=0.00;FS=3.343;HaplotypeScore=12.2417;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.185;QD=18.81;ReadPosRankSum=1.659;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1839,201,0 chrXV 773149 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.34;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1965,207,0 chrXV 773455 . A G 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.164;QD=21.89;ReadPosRankSum=1.675;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1368,150,0 chrXV 773755 . G T 1127 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.82;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1160,126,0 chrXV 773959 . T C 1138 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.907;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.560;QD=17.51;ReadPosRankSum=1.519;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1171,129,0 chrXV 773995 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=18.25;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:71:99:1329,144,0 chrXV 774085 . T G 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;MQRankSum=0.606;QD=19.07;ReadPosRankSum=1.083;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1559,171,0 chrXV 774112 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=17.08;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1041,111,0 chrXV 774129 . C T 677 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=11.28;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:60:78:710,78,0 chrXV 774148 . A C 618 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=12.61;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:75:651,75,0 chrXV 774153 . G A 581 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=10.76;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:66:614,66,0 chrXV 774203 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=19.81;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1063,111,0 chrXV 774251 . A T 881 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.02;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:914,96,0 chrXV 774265 . C G 786 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=19.17;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:819,87,0 chrXV 774269 . C T 789 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=19.24;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:87:822,87,0 chrXV 774457 . G C 1302 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.07;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1335,150,0 chrXV 774673 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.75;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1593,177,0 chrXV 774747 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.04;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1577,168,0 chrXV 774866 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.25;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1568,177,0 chrXV 774965 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1560,171,0 chrXV 775432 . G A 2283 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.17;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2316,258,0 chrXV 775735 . T A 2527 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.97;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2560,267,0 chrXV 776223 . A G 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.973;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=2.521;QD=20.28;ReadPosRankSum=2.521;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1534,147,0 chrXV 776340 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.72;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1601,177,0 chrXV 776725 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.08;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1846,198,0 chrXV 776874 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1556,168,0 chrXV 776943 . A C 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=96;Dels=0.00;FS=5.119;HaplotypeScore=18.7772;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.161;QD=21.62;ReadPosRankSum=1.694;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:1,90:96:99:2109,231,0 chrXV 777063 . G A 1896 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.39;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1929,213,0 chrXV 777123 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.53;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2401,255,0 chrXV 777138 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.5626;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.03;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2390,255,0 chrXV 777201 . G A 2022 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.22;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2055,225,0 chrXV 777225 . C T 2328 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.56;SB=-1.528e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2361,252,0 chrXV 777268 . A G 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.781;QD=17.59;ReadPosRankSum=1.698;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1827,204,0 chrXV 777290 . G C 1861 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1970;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.99;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1894,210,0 chrXV 777500 . A C 1812 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0111;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.661;QD=19.07;ReadPosRankSum=2.320;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1845,204,0 chrXV 777645 . G A 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=13.1927;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.811;QD=18.65;ReadPosRankSum=-0.285;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1544,168,0 chrXV 777720 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.71;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1618,180,0 chrXV 778024 . C T 1398 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1431,153,0 chrXV 778545 . T C 1431 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.412;QD=22.71;ReadPosRankSum=1.677;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1464,165,0 chrXV 779051 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.43;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1749,186,0 chrXV 779089 . A C 1880 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.509;QD=20.22;ReadPosRankSum=1.695;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1913,210,0 chrXV 779132 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.78;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1378,147,0 chrXV 779194 . A G 1940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.054;QD=20.00;ReadPosRankSum=1.696;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1973,216,0 chrXV 779309 . G C 2364 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.89;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2397,264,0 chrXV 779773 . T C 864 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=17.28;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:897,99,0 chrXV 779788 . T A 890 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=18.54;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:923,102,0 chrXV 779821 . A T 590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.558;DP=40;Dels=0.00;FS=2.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-1.227;QD=14.75;ReadPosRankSum=3.558;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:5,35:40:66:623,66,0 chrXV 779845 . T C 676 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.78;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:78:709,78,0 chrXV 780034 . T C 310 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;QD=11.92;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:39:343,39,0 chrXV 780065 . C A 370 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=12.76;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:403,45,0 chrXV 780068 . T C 336 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;MQRankSum=-1.502;QD=11.20;ReadPosRankSum=1.617;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:42:369,42,0 chrXV 780072 . C A 212.45 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=-0.866;QD=6.64;ReadPosRankSum=0.975;SB=-2.814e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:7:244,7,0 chrXV 780077 . G A 399 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=11.40;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:48:432,48,0 chrXV 780180 . T C 449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.156;QD=18.71;ReadPosRankSum=1.589;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:54:482,54,0 chrXV 780221 . C T 521 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.97;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:554,60,0 chrXV 780235 . T A 472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.595;QD=18.88;ReadPosRankSum=1.595;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:57:505,57,0 chrXV 780477 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.89;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1193,129,0 chrXV 780631 . C T 2139 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.05;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2172,231,0 chrXV 780669 . G A 2397 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.40;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2430,273,0 chrXV 780728 . A G 1920 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.20;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1953,219,0 chrXV 780732 . C A 1872 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.50;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1905,204,0 chrXV 780764 . C G 1738 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=18.10;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1771,192,0 chrXV 780823 . G T 1556 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.21;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1589,174,0 chrXV 780858 . G C 2310 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.59;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,98:107:99:2343,255,0 chrXV 781222 . T C 1370 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.30;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1403,159,0 chrXV 781811 . G C 1155 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.26;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1188,132,0 chrXV 781897 . C A 1350 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=15.88;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1383,159,0 chrXV 781943 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.99;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1766,186,0 chrXV 782160 . C T 1167 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=17.16;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1200,129,0 chrXV 782167 . G T 1121 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3125;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.01;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1154,129,0 chrXV 782356 . A C 1292 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.90;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1325,147,0 chrXV 782474 . G C 1335 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.53;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1368,150,0 chrXV 782578 . G A 985 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.58;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1018,111,0 chrXV 782587 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.45;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1064,114,0 chrXV 782716 . G A 1233 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.80;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1266,132,0 chrXV 782821 . A T 1356 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.83;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1389,153,0 chrXV 783203 . A G 1515 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.435;QD=21.64;ReadPosRankSum=1.485;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1548,171,0 chrXV 783238 . C T 1618 filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1651,180,0 chrXV 783414 . T G 403 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.21;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:48:436,48,0 chrXV 783444 . C G 281 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.56;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:36:314,36,0 chrXV 783455 . A G 288 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.00;SB=-8.426e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:36:321,36,0 chrXV 783522 . C G 209.01 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.00;SB=-1.514e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:27:242,27,0 chrXV 783587 . G A 546 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.20;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,28:30:66:579,66,0 chrXV 783669 . T C 1049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.898;QD=19.07;ReadPosRankSum=1.668;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1082,123,0 chrXV 783674 . T C 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.732;QD=18.02;ReadPosRankSum=1.543;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1024,114,0 chrXV 783919 . G A 1172 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.94;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1205,129,0 chrXV 784001 . G A 1031 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.48;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1064,114,0 chrXV 784606 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.58;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1659,183,0 chrXV 784642 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.58;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1772,189,0 chrXV 784734 . C T 1427 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.62;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1460,156,0 chrXV 784813 . C G 1243 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.20;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1276,144,0 chrXV 785050 . T C 1563 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.01;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1596,177,0 chrXV 785112 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.70;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,177,0 chrXV 785151 . A C 991 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=14.36;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1024,114,0 chrXV 785154 . T G 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=72;Dels=0.00;FS=3.058;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-0.771;QD=13.76;ReadPosRankSum=2.381;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1024,111,0 chrXV 785163 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=13.96;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:996,105,0 chrXV 785203 . A C 883 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=13.80;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:916,99,0 chrXV 785252 . A G 1623 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.86;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1656,180,0 chrXV 785674 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5839;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.329;QD=19.57;ReadPosRankSum=1.557;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1579,177,0 chrXV 785820 . T A 1417 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1450,159,0 chrXV 785982 . C T 1084 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1117,123,0 chrXV 786510 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.63;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1466,168,0 chrXV 786645 . A G 1954 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=24.42;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1987,219,0 chrXV 786708 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.78;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1531,162,0 chrXV 786840 . T C 1180 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.536;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.642;QD=21.45;ReadPosRankSum=1.540;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1213,132,0 chrXV 786986 . T A 2858 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.41;SB=-1.626e+03 GT:AD:DP:GQ:PL 1/1:0,140:140:99:2891,321,0 chrXV 787002 . A T 2342 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=102.4499;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.758;QD=18.16;ReadPosRankSum=1.570;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,128:129:99:2375,264,0 chrXV 787507 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.56;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1770,186,0 chrXV 787600 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.90;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:848,93,0 chrXV 787943 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.90;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1682,183,0 chrXV 788137 . C A 2405 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.67;SB=-1.402e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2438,258,0 chrXV 788235 . T C 2773 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.803;QD=22.54;ReadPosRankSum=1.704;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:2806,318,0 chrXV 788275 . C T 2885 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.6018;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.87;SB=-1.236e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2918,309,0 chrXV 788305 . G A 2947 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.16;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,132:133:99:2980,330,0 chrXV 788535 . A G 1508 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7952;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.39;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1541,171,0 chrXV 789017 . G A 654 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:687,72,0 chrXV 789110 . T C 968 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.61;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1001,114,0 chrXV 789588 . G A 1062 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.04;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1095,117,0 chrXV 789595 . T C 1044 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.7097;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.490;QD=16.57;ReadPosRankSum=1.941;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1077,117,0 chrXV 789672 . A G 1149 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=14.73;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1182,135,0 chrXV 789673 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.51;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1258,135,0 chrXV 789868 . T A 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=10.4546;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.047;QD=18.70;ReadPosRankSum=1.692;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1641,180,0 chrXV 790119 . A C 2282 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.13;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2315,255,0 chrXV 790680 . A C 1645 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.31;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1678,186,0 chrXV 790688 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.03;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1517,165,0 chrXV 790997 . T C 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.490;QD=19.86;ReadPosRankSum=2.404;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:2,106:115:99:2317,261,0 chrXV 791498 . T C 1328 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.140;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.357;QD=19.25;ReadPosRankSum=1.630;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1361,153,0 chrXV 791600 . A G 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=4.327;HaplotypeScore=5.8819;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.240;QD=23.35;ReadPosRankSum=1.679;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1574,174,0 chrXV 792267 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4036;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.51;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1736,186,0 chrXV 792544 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.04;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1379,141,0 chrXV 793037 . A G 1661 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.54;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1694,186,0 chrXV 794018 . A C 2116 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.04;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2149,243,0 chrXV 794688 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1567,165,0 chrXV 794866 . T A 1775 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.39;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1808,192,0 chrXV 795549 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.1632;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.82;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1242,135,0 chrXV 795596 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.94;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1143,120,0 chrXV 796275 . C T 2242 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2275,246,0 chrXV 796340 . T G 1863 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.441;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.9063;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=17.41;ReadPosRankSum=0.567;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1896,210,0 chrXV 796472 . C A 1991 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.12;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2024,213,0 chrXV 796590 . G A 2857 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.5298;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.70;SB=-1.913e+03 GT:AD:DP:GQ:PL 1/1:0,142:145:99:2890,303,0 chrXV 797036 . A G 1984 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.55;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2017,225,0 chrXV 797362 . C T 1230 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.85;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1263,132,0 chrXV 798206 . A T 1554 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1587,171,0 chrXV 798886 . C T 938 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.54;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:971,102,0 chrXV 798916 . T C 947 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.54;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:980,108,0 chrXV 799117 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.87;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1245,132,0 chrXV 799894 . T A 1247 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1280,135,0 chrXV 799973 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.00;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1413,156,0 chrXV 800155 . C T 833 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.2314;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.35;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:866,93,0 chrXV 800527 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.66;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1370,153,0 chrXV 800594 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.32;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1852,198,0 chrXV 800964 . T C 2037 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.14;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2070,231,0 chrXV 801084 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.56;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1580,171,0 chrXV 801285 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.59;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1825,201,0 chrXV 801441 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.00;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2494,264,0 chrXV 802374 . T C 869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=5.850;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.455;QD=17.38;ReadPosRankSum=1.663;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:902,99,0 chrXV 802733 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.1600;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.62;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1229,132,0 chrXV 803637 . C A 1488 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=19.84;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1521,168,0 chrXV 804330 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=20.52;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1736,192,0 chrXV 804331 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=21.23;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1795,201,0 chrXV 804445 . T A 1291 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.36;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1324,144,0 chrXV 804513 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.097;QD=23.11;ReadPosRankSum=1.615;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:2113,234,0 chrXV 804694 . C T 1880 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.38;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1913,213,0 chrXV 804790 . A G 1513 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.73;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1546,174,0 chrXV 804850 . A T 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0472;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.959;QD=19.89;ReadPosRankSum=1.665;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2082,231,0 chrXV 804884 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.60;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1476,165,0 chrXV 805104 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.00;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1459,162,0 chrXV 805146 . A G 925 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=15.95;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:958,108,0 chrXV 805168 . A G 744 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.9060;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=11.81;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:87:777,87,0 chrXV 805185 . A C 699 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0853;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=11.46;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:732,81,0 chrXV 805345 . T A 1703 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.71;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1736,189,0 chrXV 805549 . C T 1091 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.14;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1124,120,0 chrXV 805851 . T C 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;DP=91;Dels=0.00;FS=8.445;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.881;QD=20.55;ReadPosRankSum=3.340;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:4,87:91:99:1903,216,0 chrXV 805899 . C A 2257 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.57;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2290,255,0 chrXV 806194 . G A 1867 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.08;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1900,210,0 chrXV 806226 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.184;QD=18.40;ReadPosRankSum=1.695;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1763,195,0 chrXV 806232 . A G 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8889;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.177;QD=17.28;ReadPosRankSum=0.212;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,97:101:99:1778,201,0 chrXV 806274 . A G 1806 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.283;QD=18.43;ReadPosRankSum=1.661;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1839,204,0 chrXV 806319 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.33;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2020,219,0 chrXV 806847 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.84;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1325,147,0 chrXV 806960 . G T 964 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.08;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:997,108,0 chrXV 807285 . T G 614 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=14.98;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:647,72,0 chrXV 807324 . A G 580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.495;QD=13.81;ReadPosRankSum=1.650;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:69:613,69,0 chrXV 807337 . T C 748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.405;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=0.377;QD=16.26;ReadPosRankSum=1.657;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:87:781,87,0 chrXV 807453 . C T 1495 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.76;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1528,168,0 chrXV 807631 . A C 989 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.98;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1022,114,0 chrXV 807798 . G C 1769 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.68;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1802,201,0 chrXV 807840 . T A 1646 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=21.38;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1679,180,0 chrXV 807849 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.19;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1653,183,0 chrXV 807953 . G A 683 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.07;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:716,75,0 chrXV 808135 . C A 1672 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.90;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1705,180,0 chrXV 808141 . G A 1543 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.78;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1576,165,0 chrXV 808174 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.41;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1275,144,0 chrXV 808281 . T C 1928 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.10;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1961,216,0 chrXV 808425 . A G 1270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.341;QD=20.48;ReadPosRankSum=1.676;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1303,147,0 chrXV 808472 . A G 1517 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.64;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1550,171,0 chrXV 808584 . C G 2092 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.57;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2125,231,0 chrXV 808677 . G A 2050 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.71;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2083,222,0 chrXV 809001 . A G 1864 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1897,213,0 chrXV 809071 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.00;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2049,216,0 chrXV 809274 . G A 2502 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.38;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2535,267,0 chrXV 809343 . A G 2507 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.11;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2540,285,0 chrXV 809376 . T C 2304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.9314;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.492;QD=22.81;ReadPosRankSum=1.664;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2337,261,0 chrXV 809460 . C T 2740 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.25;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2773,300,0 chrXV 809724 . C T 1817 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.19;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1850,198,0 chrXV 809812 . A G 2110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.353;QD=18.35;ReadPosRankSum=1.701;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,112:115:99:2143,240,0 chrXV 809895 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.01;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2034,216,0 chrXV 809913 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.55;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2006,210,0 chrXV 809961 . A G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=0.438;QD=19.61;ReadPosRankSum=1.690;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1661,189,0 chrXV 810088 . T G 1327 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.12;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1360,153,0 chrXV 810364 . G T 1854 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.60;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1887,204,0 chrXV 810557 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3134;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.91;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1567,168,0 chrXV 810780 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.33;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1590,177,0 chrXV 810838 . G C 1867 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.63;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1900,210,0 chrXV 811578 . A G 2408 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.08;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2441,273,0 chrXV 811738 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.83;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1561,168,0 chrXV 812092 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.32;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1334,147,0 chrXV 812219 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.85;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:919,102,0 chrXV 812380 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6292;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.98;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1921,210,0 chrXV 812644 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.43;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1136,123,0 chrXV 812662 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.63;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1330,141,0 chrXV 812674 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=16.38;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1458,153,0 chrXV 813043 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.58;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1309,147,0 chrXV 813776 . T A 1895 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.29;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1928,216,0 chrXV 813966 . C T 91.20 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;DP=93;Dels=0.00;FS=10.007;HaplotypeScore=81.4586;MLEAC=1;MLEAF=0.500;MQ=54.88;MQ0=0;MQRankSum=1.614;QD=0.98;ReadPosRankSum=-4.358;SB=-2.197e+00 GT:AD:DP:GQ:PL 0/1:84,8:93:2:120,0,2 chrXV 814261 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.08;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2594,276,0 chrXV 814826 . C T 2019 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3061;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.71;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2052,222,0 chrXV 815003 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.61;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1249,141,0 chrXV 815030 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.29;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1638,180,0 chrXV 815061 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.61;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1546,174,0 chrXV 815222 . A G 1839 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.66;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1872,213,0 chrXV 815249 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.27;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1898,201,0 chrXV 815267 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.67;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1601,174,0 chrXV 815746 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.11;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1275,141,0 chrXV 815934 . C T 1198 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.96;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1231,132,0 chrXV 816109 . C T 2478 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.38;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2511,267,0 chrXV 816176 . A G 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=131;Dels=0.00;FS=16.080;HaplotypeScore=5.6929;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.366;QD=22.63;ReadPosRankSum=2.412;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:2,129:131:99:2997,345,0 chrXV 816215 . C G 1747 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.30;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1780,201,0 chrXV 816326 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.01;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1640,186,0 chrXV 816467 . A T 1984 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.54;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2017,222,0 chrXV 816611 . A G 1899 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.83;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1932,219,0 chrXV 816620 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.26;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2079,228,0 chrXV 816745 . A G 2703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=5.307;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.402;QD=23.92;ReadPosRankSum=1.701;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2736,297,0 chrXV 816857 . C T 2690 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.23;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2723,288,0 chrXV 816997 . G A 2247 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.03;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2280,243,0 chrXV 817966 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.37;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2069,228,0 chrXV 818089 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.66;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1926,210,0 chrXV 818263 . G T 1923 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.36;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1956,219,0 chrXV 818546 . G A 969 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.63;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1002,108,0 chrXV 819302 . T C 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=97;Dels=0.00;FS=21.019;HaplotypeScore=5.0226;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.642;QD=19.36;ReadPosRankSum=3.329;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:4,93:97:99:1911,213,0 chrXV 819348 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.40;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1915,204,0 chrXV 819520 . G A 2313 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.90;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2346,255,0 chrXV 819609 . A G 2035 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.36;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,88:91:99:2068,237,0 chrXV 819667 . T C 1875 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.07;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1908,210,0 chrXV 819714 . A G 2052 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.30;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2085,231,0 chrXV 820011 . G T 1909 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.94;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1942,210,0 chrXV 820207 . T G 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=-1.815;QD=22.60;ReadPosRankSum=2.374;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2225,246,0 chrXV 820227 . C G 2190 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.90;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2223,246,0 chrXV 820407 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9204;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.23;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1880,204,0 chrXV 820504 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.99;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:2079,228,0 chrXV 820732 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=20.28;ReadPosRankSum=1.668;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1128,126,0 chrXV 820854 . C G 991 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.02;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1024,111,0 chrXV 820953 . A G 1129 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.408;DP=59;Dels=0.00;FS=7.927;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.441;QD=19.14;ReadPosRankSum=3.657;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:5,53:59:99:1162,132,0 chrXV 821078 . G C 1646 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.55;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1679,186,0 chrXV 821142 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.91;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1478,162,0 chrXV 821187 . G T 1295 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.12;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1328,144,0 chrXV 821223 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.17;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1097,120,0 chrXV 821439 . C T 2706 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2739,297,0 chrXV 821660 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=4.586;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.481;QD=20.11;ReadPosRankSum=1.682;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1441,162,0 chrXV 821916 . A G 2227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=100;Dels=0.00;FS=3.329;HaplotypeScore=5.0812;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.227;QD=22.27;ReadPosRankSum=1.697;SB=-1.134e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:2260,249,0 chrXV 822089 . A G 2426 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.01;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2459,279,0 chrXV 822154 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6543;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.15;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1584,177,0 chrXV 822183 . T C 1233 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.90;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1266,144,0 chrXV 822553 . C G 1278 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.82;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1311,144,0 chrXV 822966 . T C 144.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.687;DP=103;Dels=0.00;FS=15.554;HaplotypeScore=11.9452;MLEAC=1;MLEAF=0.500;MQ=57.73;MQ0=0;MQRankSum=-1.340;QD=1.40;ReadPosRankSum=-5.326;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,16:103:99:174,0,965 chrXV 822969 . T C 843.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DP=99;Dels=0.00;FS=18.209;HaplotypeScore=7.8536;MLEAC=1;MLEAF=0.500;MQ=57.64;MQ0=0;MQRankSum=1.461;QD=8.52;ReadPosRankSum=6.165;SB=-9.040e+02 GT:AD:DP:GQ:PL 0/1:17,82:99:99:873,0,223 chrXV 822978 . T C 1060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;DP=98;Dels=0.00;FS=1.749;HaplotypeScore=5.1859;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.953;QD=10.82;ReadPosRankSum=3.633;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:5,93:98:58:1093,58,0 chrXV 823202 . G T 1893 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.2090;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.90;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,109:112:99:1926,210,0 chrXV 823625 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.76;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1467,156,0 chrXV 823983 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.59;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1502,168,0 chrXV 824472 . A G 1435 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.50;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1468,162,0 chrXV 824520 . A G 1809 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.90;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1842,198,0 chrXV 824577 . T A 957 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.522;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.476;QD=17.72;ReadPosRankSum=1.668;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:990,111,0 chrXV 824646 . A G 1164 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.354;QD=20.79;ReadPosRankSum=1.669;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1197,132,0 chrXV 824928 . T C 768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.462;QD=21.33;ReadPosRankSum=2.239;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,33:36:87:801,87,0 chrXV 824954 . G A 752 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.32;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:785,87,0 chrXV 825198 . G A 938 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.81;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:971,108,0 chrXV 825345 . A G 1852 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.37;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1885,207,0 chrXV 826212 . A T 2012 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.54;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2045,222,0 chrXV 826528 . A G 2268 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.20;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2301,258,0 chrXV 826621 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.64;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1408,156,0 chrXV 827016 . A T 2264 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.88;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2297,243,0 chrXV 827048 . A G 2040 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.42;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2073,228,0 chrXV 827194 . A T 2048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=90;Dels=0.00;FS=9.544;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.955;QD=22.76;ReadPosRankSum=2.367;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:2081,225,0 chrXV 827284 . T A 1697 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.51;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1730,189,0 chrXV 828529 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1583,177,0 chrXV 828571 . C T 1289 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=16.32;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1322,147,0 chrXV 829129 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.26;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1431,153,0 chrXV 829210 . G A 1865 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.02;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1898,204,0 chrXV 829795 . A T 1518 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.46;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1551,171,0 chrXV 830744 . T A 602 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.81;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:635,69,0 chrXV 830783 . C A 448 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.67;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:51:481,51,0 chrXV 830785 . C T 391 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=16.29;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,23:24:48:424,48,0 chrXV 830894 . C A 432 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.00;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:51:465,51,0 chrXV 831051 . C T 2875 filter AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2908,312,0 chrXV 832222 . G T 1511 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.7838;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.43;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1544,168,0 chrXV 832236 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.93;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1396,150,0 chrXV 832576 . G A 2098 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.41;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2131,231,0 chrXV 832602 . C G 1685 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7250;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.52;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1718,189,0 chrXV 832616 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=18.15;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1358,150,0 chrXV 832633 . C T 809 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=15.26;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:90:842,90,0 chrXV 832648 . T A 585 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=10.09;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:66:618,66,0 chrXV 832664 . T A 778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=-1.228;QD=14.15;ReadPosRankSum=1.669;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:87:811,87,0 chrXV 832805 . A G 2109 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7577;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.92;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2142,237,0 chrXV 832871 . T C 2060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=100;Dels=0.00;FS=2.935;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.655;QD=20.60;ReadPosRankSum=2.373;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:3,95:100:99:2093,237,0 chrXV 833083 . A G 2382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.160;DP=109;Dels=0.00;FS=3.653;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.874;QD=21.85;ReadPosRankSum=0.874;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2415,251,0 chrXV 833145 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.77;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2145,231,0 chrXV 833904 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.68;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1942,216,0 chrXV 834371 . A G 2184 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=99;Dels=0.00;FS=5.244;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.696;QD=22.06;ReadPosRankSum=1.696;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,96:99:99:2217,249,0 chrXV 834738 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.84;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2096,222,0 chrXV 834770 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.04;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2185,237,0 chrXV 834976 . C T 1992 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.92;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2025,222,0 chrXV 835445 . T G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=4.973;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.682;QD=20.39;ReadPosRankSum=1.680;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1379,150,0 chrXV 835817 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=17.98;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1148,120,0 chrXV 836272 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.85;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1372,147,0 chrXV 836722 . T C 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.152;QD=23.19;ReadPosRankSum=1.550;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1355,150,0 chrXV 836747 . A C 1275 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.98;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1308,144,0 chrXV 837247 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.06;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:99:1402,147,0 chrXV 837685 . A G 1619 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.46;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1652,180,0 chrXV 838080 . A C 1592 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1625,186,0 chrXV 838118 . A G 1550 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3266;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.729;QD=20.13;ReadPosRankSum=1.550;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1583,177,0 chrXV 838159 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4968;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.01;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1838,204,0 chrXV 838228 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4481;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.39;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2182,240,0 chrXV 838573 . C T 2653 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.11;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2686,291,0 chrXV 839012 . A G 2043 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.51;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2076,228,0 chrXV 839433 . C T 1759 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.45;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1792,186,0 chrXV 839776 . G T 1310 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.47;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1343,144,0 chrXV 839947 . A T 1937 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.52;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1970,210,0 chrXV 840149 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.42;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1404,150,0 chrXV 840176 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.79;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1613,180,0 chrXV 840302 . A G 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.055;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.304;QD=21.76;ReadPosRankSum=1.696;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2144,243,0 chrXV 840713 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.28;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1845,204,0 chrXV 840781 . T A 2697 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.74;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2730,294,0 chrXV 841378 . T G 2000 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.05;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2033,231,0 chrXV 841912 . G T 1823 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.7538;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.68;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1856,198,0 chrXV 842069 . A G 1129 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.21;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1162,129,0 chrXV 842085 . C T 1034 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=16.68;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1067,114,0 chrXV 842107 . C T 808 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=13.25;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:93:841,93,0 chrXV 842131 . T C 637 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=10.98;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:75:670,75,0 chrXV 842137 . C A 652 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=10.87;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:60:75:685,75,0 chrXV 843188 . T C 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.330;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.299;QD=19.48;ReadPosRankSum=1.673;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1163,132,0 chrXV 843195 . A G 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.056;QD=19.61;ReadPosRankSum=1.676;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1249,120,0 chrXV 843866 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.54;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1318,138,0 chrXV 843892 . A G 902 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.61;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:935,105,0 chrXV 843925 . G A 1024 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.69;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1057,114,0 chrXV 845796 . A G 1613 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.40;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1646,183,0 chrXV 845929 . C T 1651 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.17;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1684,180,0 chrXV 848614 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.04;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1577,171,0 chrXV 848780 . G C 1432 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.74;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1465,165,0 chrXV 849039 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4038;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=22.87;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2526,267,0 chrXV 849266 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=20.22;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1711,177,0 chrXV 849267 . A T 1640 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=19.76;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1673,177,0 chrXV 849390 . A G 1525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=-1.227;QD=15.89;ReadPosRankSum=1.696;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1558,174,0 chrXV 849394 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=15.11;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1529,171,0 chrXV 849415 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=16.97;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1866,198,0 chrXV 849439 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.35;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1855,204,0 chrXV 849514 . C T 1874 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.34;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1907,198,0 chrXV 849841 . T C 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.73;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2006,219,0 chrXV 851249 . T A 1646 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=16.80;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1679,186,0 chrXV 851261 . C T 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=3.936;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.102;QD=19.37;ReadPosRankSum=0.857;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,98:101:99:1989,210,0 chrXV 852044 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.43;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1199,132,0 chrXV 852208 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.56;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:917,102,0 chrXV 852451 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.68;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1129,126,0 chrXV 852538 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.91;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1304,147,0 chrXV 852722 . T A 1731 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.37;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1764,189,0 chrXV 854531 . T C 104.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:137,15,0 chrXV 854533 . T C 101.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:134,15,0 chrXV 855289 . C T 512 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:545,57,0 chrXV 856328 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.68;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2618,288,0 chrXV 859563 . T A 2033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.912;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.263;QD=21.18;ReadPosRankSum=-0.541;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2066,228,0 chrXV 859857 . T C 1815 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.17;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1848,210,0 chrXV 859965 . C G 3209.99 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.8585;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.60;SB=-1.573e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:3243,360,0 chrXV 860275 . A G 2087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=100;Dels=0.00;FS=2.587;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.101;QD=20.87;ReadPosRankSum=2.930;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:3,97:100:99:2120,231,0 chrXV 860337 . T A 2284 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.55;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2317,252,0 chrXV 860789 . C T 571 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.30;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:66:604,66,0 chrXV 861110 . A G 780 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:813,90,0 chrXV 861653 . T C 949 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.98;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:982,108,0 chrXV 861787 . A G 1182 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=3.074;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.691;QD=20.03;ReadPosRankSum=2.367;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1215,138,0 chrXV 862116 . T C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.150;QD=21.52;ReadPosRankSum=1.604;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1776,195,0 chrXV 862224 . A T 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=4.680;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.958;QD=23.57;ReadPosRankSum=1.695;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2272,240,0 chrXV 862275 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1567,177,0 chrXV 862998 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7079;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.64;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1604,180,0 chrXV 863103 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.54;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1430,162,0 chrXV 863148 . C T 1486 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.23;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1519,165,0 chrXV 863403 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.71;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1532,165,0 chrXV 863813 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.26;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1415,153,0 chrXV 863844 . T C 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=93;Dels=0.00;FS=9.638;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.252;QD=18.88;ReadPosRankSum=2.291;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1789,201,0 chrXV 864477 . A C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7245;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.562;QD=21.51;ReadPosRankSum=-0.328;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1625,186,0 chrXV 864723 . G A 1983 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.79;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:2016,213,0 chrXV 864882 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.15;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1795,201,0 chrXV 866689 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.03;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2192,240,0 chrXV 866753 . G A 1839 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.77;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1872,210,0 chrXV 866817 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.61;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1459,153,0 chrXV 866840 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.26;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1458,159,0 chrXV 867041 . G A 3122 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6598;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.13;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,132:135:99:3155,330,0 chrXV 867169 . T G 2600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.283;QD=23.64;ReadPosRankSum=1.701;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2633,291,0 chrXV 867347 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.2250;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.75;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2354,252,0 chrXV 867358 . A G 2203 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.98;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2236,255,0 chrXV 868024 . A G 446 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=-0.743;QD=12.74;ReadPosRankSum=1.634;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:54:479,54,0 chrXV 868038 . G A 480 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=13.33;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:54:513,54,0 chrXV 868053 . T C 266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=14.8849;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;MQRankSum=-1.325;QD=7.82;ReadPosRankSum=1.631;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:33:299,33,0 chrXV 868056 . C G 264 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=17.8494;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;QD=7.76;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:33:297,33,0 chrXV 868096 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.30;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1241,132,0 chrXV 868474 . G A 2717 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.63;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2750,288,0 chrXV 868576 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.17;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2160,234,0 chrXV 868630 . T C 1571 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1604,180,0 chrXV 868909 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.03;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1275,135,0 chrXV 869099 . C T 915 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=19.06;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:948,102,0 chrXV 869133 . G A 1011 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=17.74;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1044,111,0 chrXV 869134 . A C 957 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=16.79;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:990,111,0 chrXV 869158 . A C 440 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=10.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:54:473,54,0 chrXV 869174 . T C 426 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=9.47;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:51:459,51,0 chrXV 869184 . G A 420 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=9.77;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:48:453,48,0 chrXV 869373 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.93;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1661,177,0 chrXV 869434 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=20.69;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1585,168,0 chrXV 869435 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=19.64;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1486,168,0 chrXV 869473 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=18.46;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1436,150,0 chrXV 869524 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=22.13;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1383,156,0 chrXV 869837 . T C 1429 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=3.490;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.577;QD=21.01;ReadPosRankSum=1.629;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1462,162,0 chrXV 870105 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.0234;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.92;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1351,147,0 chrXV 870333 . G A 2240 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3159;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.13;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2273,255,0 chrXV 870396 . G A 2405 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.69;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2438,264,0 chrXV 870449 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1751,195,0 chrXV 870516 . A G 1312 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.82;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1345,153,0 chrXV 870951 . T C 1248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.400;QD=18.91;ReadPosRankSum=1.679;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1281,144,0 chrXV 871008 . C A 1685 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.55;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1718,180,0 chrXV 871028 . A G 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.641;HaplotypeScore=8.2008;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.796;QD=18.03;ReadPosRankSum=1.639;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1367,150,0 chrXV 871710 . G T 1126 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1159,123,0 chrXV 871819 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.30;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1460,156,0 chrXV 871928 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.29;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1549,162,0 chrXV 872836 . A T 1823 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1856,198,0 chrXV 873788 . G A 1061 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.40;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1094,120,0 chrXV 873789 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.02;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1074,123,0 chrXV 873823 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.96;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1018,114,0 chrXV 873866 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.06;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1023,114,0 chrXV 874225 . A G 1006 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.53;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1039,117,0 chrXV 874238 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.68;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1052,111,0 chrXV 874326 . C A 2331 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.20;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2364,258,0 chrXV 874350 . A C 2300 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.77;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2333,258,0 chrXV 874388 . A T 2234 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.9095;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.28;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2267,246,0 chrXV 874455 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.17;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1718,192,0 chrXV 874665 . C T 2723 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.69;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2756,300,0 chrXV 874666 . T C 2671 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-0.919;QD=22.26;ReadPosRankSum=1.702;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:1,114:118:99:2704,297,0 chrXV 875004 . T C 965 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=13.40;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:998,114,0 chrXV 875332 . A T 1307 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.11;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1340,147,0 chrXV 875566 . C A 1658 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=19.51;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1691,183,0 chrXV 875572 . A C 1548 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=17.20;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1581,177,0 chrXV 875585 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=16.00;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1569,168,0 chrXV 875652 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.11;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1159,129,0 chrXV 875886 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.11;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1237,135,0 chrXV 876178 . G C 707 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:740,81,0 chrXV 876460 . A G 1448 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.35;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1481,168,0 chrXV 876653 . C A 1084 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.68;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1117,120,0 chrXV 876891 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2128,237,0 chrXV 877083 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8182;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=12.31;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1190,126,0 chrXV 877263 . G A 1945 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7278;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.10;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1978,213,0 chrXV 877527 . C T 1652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.8247;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.111;QD=17.57;ReadPosRankSum=-0.958;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1685,183,0 chrXV 877723 . C G 72.51 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=81.4356;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=0.80;SB=-9.415e+02 GT:AD:DP:GQ:PL 1/1:0,85:91:12:105,12,0 chrXV 877788 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=8.268;HaplotypeScore=5.5115;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-2.222;QD=17.92;ReadPosRankSum=2.404;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:2,106:108:99:1968,219,0 chrXV 877812 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3906;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.27;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1999,213,0 chrXV 877951 . T G 1560 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.157;QD=17.73;ReadPosRankSum=1.693;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1593,177,0 chrXV 877953 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.57;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1657,174,0 chrXV 877970 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=16.09;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1481,159,0 chrXV 878115 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.9397;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.78;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1853,204,0 chrXV 878163 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.93;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1434,162,0 chrXV 878178 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.97;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1456,156,0 chrXV 878260 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.05;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2075,219,0 chrXV 878721 . A C 745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.275;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3231;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.405;QD=13.80;ReadPosRankSum=1.602;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:87:778,87,0 chrXV 878999 . G A 1465 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.03;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1498,162,0 chrXV 879013 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3212;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=15.86;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1349,150,0 chrXV 879022 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=15.24;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1252,141,0 chrXV 879067 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.7757;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=16.47;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1285,138,0 chrXV 879097 . T G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.280;QD=20.79;ReadPosRankSum=1.582;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1488,168,0 chrXV 879127 . A G 1279 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.38;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1312,147,0 chrXV 879175 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.52;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:909,99,0 chrXV 879184 . C A 854 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.0744;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.25;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:887,96,0 chrXV 879343 . T A 1871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.434;QD=19.90;ReadPosRankSum=1.546;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1904,195,0 chrXV 879406 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.75;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1876,204,0 chrXV 879676 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.21;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1993,213,0 chrXV 880012 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.88;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1910,204,0 chrXV 880027 . G A 2307 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9047;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.06;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2340,249,0 chrXV 880543 . T C 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=78;Dels=0.00;FS=4.437;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.901;QD=16.82;ReadPosRankSum=1.686;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,74:78:99:1345,153,0 chrXV 880556 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.115;QD=19.78;ReadPosRankSum=1.675;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1220,132,0 chrXV 880789 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.61;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2171,234,0 chrXV 881292 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2289,246,0 chrXV 881375 . T A 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.459;QD=22.51;ReadPosRankSum=1.681;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1586,168,0 chrXV 881412 . C T 1545 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1578,171,0 chrXV 881726 . C T 2731 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.75;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2764,303,0 chrXV 881960 . T C 1954 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.76;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1987,228,0 chrXV 882091 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.8090;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.64;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2365,261,0 chrXV 882131 . T C 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=111;Dels=0.00;FS=3.041;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.987;QD=18.44;ReadPosRankSum=2.383;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2080,237,0 chrXV 882294 . A G 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=81;Dels=0.00;FS=3.020;HaplotypeScore=7.7509;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.249;QD=15.21;ReadPosRankSum=2.387;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1265,144,0 chrXV 882343 . A G 1399 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.41;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1432,159,0 chrXV 882384 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.94;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1662,183,0 chrXV 882544 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1171,126,0 chrXV 882721 . T C 1198 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;DP=53;Dels=0.00;FS=3.263;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.667;QD=22.60;ReadPosRankSum=1.079;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1231,132,0 chrXV 882911 . G C 1775 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.99;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1808,195,0 chrXV 883135 . A G 2608 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.2432;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.86;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,121:125:99:2641,297,0 chrXV 883315 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1718,192,0 chrXV 883432 . A G 2707 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.20;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2740,306,0 chrXV 883847 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.72;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1836,195,0 chrXV 883966 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.82;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1681,183,0 chrXV 884571 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=21.32;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1483,156,0 chrXV 884596 . T C 1280 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.82;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1313,144,0 chrXV 884606 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.45;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1214,129,0 chrXV 885329 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=14.076;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.297;QD=17.14;ReadPosRankSum=2.371;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1661,189,0 chrXV 885669 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.92;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1500,168,0 chrXV 885692 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.31;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1483,165,0 chrXV 885908 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.03;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1479,165,0 chrXV 885962 . A G 1780 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.14;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1813,201,0 chrXV 886037 . A G 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.308;DP=85;Dels=0.00;FS=3.060;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.044;QD=19.99;ReadPosRankSum=1.628;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1732,189,0 chrXV 886052 . T C 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.218;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.983;QD=19.69;ReadPosRankSum=2.186;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1687,186,0 chrXV 886097 . T C 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;DP=90;Dels=0.00;FS=5.471;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.011;QD=19.44;ReadPosRankSum=2.921;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:4,86:90:99:1783,195,0 chrXV 886562 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8767;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.73;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1897,216,0 chrXV 887066 . C T 2030 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.31;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2063,219,0 chrXV 887399 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1116;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.04;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1611,174,0 chrXV 888126 . A G 837 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.02;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:870,96,0 chrXV 888458 . C T 1540 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.65;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1573,174,0 chrXV 888891 . C A 694 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.6152;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.76;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:81:727,81,0 chrXV 889108 . T C 1242 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.88;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1275,141,0 chrXV 889642 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.30;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:33:60:538,60,0 chrXV 889741 . G A 209.01 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=8.71;SB=-2.327e-02 GT:AD:DP:GQ:PL 1/1:0,24:24:27:242,27,0 chrXV 889988 . A T 1126 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.59;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1159,123,0 chrXV 890036 . C G 1141 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.82;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1174,132,0 chrXV 890242 . G C 1574 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8200;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.99;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1607,180,0 chrXV 890409 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.28;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1629,180,0 chrXV 890476 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1707;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.24;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1626,177,0 chrXV 890566 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.84;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1825,201,0 chrXV 890957 . G A 2267 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.38;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2300,243,0 chrXV 891275 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.91;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2071,222,0 chrXV 891444 . T C 1466 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.79;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1499,168,0 chrXV 891758 . C T 1079 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1112,123,0 chrXV 891827 . G C 1011 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1044,114,0 chrXV 892334 . T G 1268 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5296;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.457;QD=19.81;ReadPosRankSum=0.577;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1301,147,0 chrXV 892736 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.16;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1341,141,0 chrXV 892829 . A C 1219 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.02;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1252,141,0 chrXV 892863 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.72;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1290,147,0 chrXV 893162 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.41;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1391,150,0 chrXV 893238 . T C 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=71;Dels=0.00;FS=7.618;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.127;QD=19.03;ReadPosRankSum=0.519;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:2,67:71:99:1384,139,0 chrXV 893597 . T G 1058 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1091,120,0 chrXV 893796 . T A 1573 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1606,171,0 chrXV 894566 . T G 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.732;QD=21.11;ReadPosRankSum=1.636;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1553,171,0 chrXV 894596 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.04;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1139,120,0 chrXV 895062 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.40;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1671,180,0 chrXV 895152 . T C 1701 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.427;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.339;QD=17.54;ReadPosRankSum=1.661;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1734,189,0 chrXV 895158 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.92;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1807,201,0 chrXV 895522 . C A 1107 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.57;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1140,123,0 chrXV 895667 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=17.82;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:746,84,0 chrXV 895706 . T G 688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=5.006;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.550;QD=18.11;ReadPosRankSum=1.641;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:81:721,81,0 chrXV 896048 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.70;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1270,135,0 chrXV 896084 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.08;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1389,153,0 chrXV 896125 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.49;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1450,159,0 chrXV 896376 . C G 1610 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.64;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1643,183,0 chrXV 896879 . C T 62.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;DP=103;Dels=0.02;FS=0.935;HaplotypeScore=8.5207;MLEAC=1;MLEAF=0.500;MQ=53.13;MQ0=0;MQRankSum=-3.877;QD=0.60;ReadPosRankSum=-5.558;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:72,29:101:92:92,0,1495 chrXV 896882 . T C 177.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.808;DP=105;Dels=0.00;FS=3.208;HaplotypeScore=10.5007;MLEAC=1;MLEAF=0.500;MQ=52.78;MQ0=0;MQRankSum=-3.115;QD=1.69;ReadPosRankSum=-5.464;SB=-1.130e+02 GT:AD:DP:GQ:PL 0/1:71,34:105:99:207,0,1412 chrXV 896888 . C T 2017 SnpCluster AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0007;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.50;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2050,219,0 chrXV 896924 . G T 345.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DP=93;Dels=0.00;FS=9.055;HaplotypeScore=5.1175;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=1.391;QD=3.71;ReadPosRankSum=-5.206;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:66,27:93:99:375,0,925 chrXV 896933 . T G 141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.647;DP=93;Dels=0.00;FS=3.911;HaplotypeScore=4.3288;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-0.979;QD=1.52;ReadPosRankSum=-4.707;SB=-1.401e+01 GT:AD:DP:GQ:PL 0/1:76,17:93:99:171,0,1156 chrXV 897452 . T C 2580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.259;DP=117;Dels=0.00;FS=8.926;HaplotypeScore=11.8480;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.878;QD=22.05;ReadPosRankSum=3.259;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:4,111:117:99:2613,291,0 chrXV 897596 . A G 2309 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.0368;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.47;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2342,258,0 chrXV 898013 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.34;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1731,186,0 chrXV 898552 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7012;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.58;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1212,138,0 chrXV 898703 . A C 1284 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.14;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1317,150,0 chrXV 898841 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1742,195,0 chrXV 898990 . C A 1578 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.91;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1611,174,0 chrXV 899008 . A G 1474 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.47;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1507,171,0 chrXV 899059 . T C 2466 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.05;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2499,279,0 chrXV 899349 . C A 1759 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.55;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1792,192,0 chrXV 899806 . T A 2063 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.72;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2096,231,0 chrXV 900929 . T C 1899 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.422;QD=22.88;ReadPosRankSum=1.690;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1932,216,0 chrXV 900947 . T C 1858 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.041;QD=21.86;ReadPosRankSum=1.485;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1891,207,0 chrXV 901125 . T C 2174 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.76;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2207,249,0 chrXV 901517 . G A 1228 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.0314;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.61;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1261,135,0 chrXV 901621 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.93;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1665,192,0 chrXV 902182 . T C 1396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.379;QD=21.81;ReadPosRankSum=1.678;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1429,156,0 chrXV 902817 . A T 1606 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.5594;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.67;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1639,177,0 chrXV 902953 . A G 1407 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.07;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1440,159,0 chrXV 903002 . A G 1277 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.93;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1310,147,0 chrXV 903164 . A G 1345 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.018;QD=19.49;ReadPosRankSum=2.343;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1378,150,0 chrXV 903193 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.13;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1533,165,0 chrXV 903220 . T C 1350 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.45;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1383,153,0 chrXV 903319 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.25;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1037,117,0 chrXV 903503 . A T 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=4.597;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.672;QD=23.61;ReadPosRankSum=1.591;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1190,129,0 chrXV 903530 . A G 886 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.14;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:919,102,0 chrXV 903669 . A G 1896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.054;QD=20.61;ReadPosRankSum=1.694;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1929,213,0 chrXV 903729 . C G 1649 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.61;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1682,183,0 chrXV 903843 . T G 935 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.70;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:968,108,0 chrXV 903846 . C T 992 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.24;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1025,108,0 chrXV 903919 . G T 1236 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.31;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1269,135,0 chrXV 904342 . T C 852 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.52;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:885,99,0 chrXV 904817 . A G 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=23.38;ReadPosRankSum=0.962;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1085,120,0 chrXV 904872 . G C 694 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.83;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,33:35:81:727,81,0 chrXV 904900 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.62;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:837,93,0 chrXV 905332 . A T 978 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.45;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1011,111,0 chrXV 905341 . G A 730 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.59;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:763,84,0 chrXV 905380 . A G 864 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=14.90;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:897,102,0 chrXV 905464 . C T 1369 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.56;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1402,153,0 chrXV 905482 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.90;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1413,153,0 chrXV 905729 . A G 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.674;QD=15.87;ReadPosRankSum=1.380;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:985,108,0 chrXV 905751 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=15.32;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:952,102,0 chrXV 905801 . C T 1095 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=11.5750;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.25;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1128,120,0 chrXV 905895 . G A 1165 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=10.4365;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.80;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1198,126,0 chrXV 906845 . T C 2344 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.000;QD=22.54;ReadPosRankSum=1.632;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2377,267,0 chrXV 907000 . T C 2523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=139;Dels=0.00;FS=6.448;HaplotypeScore=11.0233;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.045;QD=18.15;ReadPosRankSum=2.395;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:2,135:139:99:2556,282,0 chrXV 907142 . T C 2452 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=133;Dels=0.00;FS=4.485;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.155;QD=18.44;ReadPosRankSum=1.706;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2485,273,0 chrXV 907702 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.17;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:96:905,96,0 chrXV 907705 . T C 865 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=17.65;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:898,99,0 chrXV 907868 . G T 1070 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=18.77;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1103,120,0 chrXV 908297 . A T 794 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.47;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:827,90,0 chrXV 908299 . T C 786 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=18.28;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:819,93,0 chrXV 908634 . A G 1692 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=20.39;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1725,189,0 chrXV 908641 . C G 1687 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.39;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1720,192,0 chrXV 908691 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=17.18;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1339,147,0 chrXV 908694 . G C 1148 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=14.91;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1181,132,0 chrXV 908860 . T A 1594 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.84;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1627,174,0 chrXV 909597 . G A 2079 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.18;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2112,234,0 chrXV 910022 . G A 3129 PASS AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2337;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.45;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:3162,333,0 chrXV 910701 . T G 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=70;Dels=0.00;FS=2.919;HaplotypeScore=8.9805;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.198;QD=20.11;ReadPosRankSum=2.343;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1441,159,0 chrXV 911862 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.23;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,57:61:99:1511,159,0 chrXV 911894 . T C 1003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.802;QD=18.57;ReadPosRankSum=2.267;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:1036,114,0 chrXV 911906 . T C 1113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-1.307;QD=19.53;ReadPosRankSum=1.672;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1146,126,0 chrXV 912636 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.94;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1898,204,0 chrXV 912655 . G C 1784 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=75.2986;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.27;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1817,201,0 chrXV 912729 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.40;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1317,144,0 chrXV 913133 . T A 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.005;QD=21.98;ReadPosRankSum=1.689;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1835,201,0 chrXV 913164 . C G 1746 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.38;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1779,204,0 chrXV 914264 . T C 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.182;QD=22.35;ReadPosRankSum=1.622;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1441,162,0 chrXV 914282 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.89;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1434,153,0 chrXV 914306 . T C 1252 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.96;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1285,138,0 chrXV 914621 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.35;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2125,231,0 chrXV 915217 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.44;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1238,138,0 chrXV 915310 . C G 1196 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=17.85;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1229,138,0 chrXV 915402 . T A 2134 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.56;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2167,228,0 chrXV 915406 . T C 2004 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.24;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2037,231,0 chrXV 915416 . A G 1847 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.627;QD=19.65;ReadPosRankSum=1.622;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1880,210,0 chrXV 915553 . A C 1492 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.06;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1525,171,0 chrXV 915644 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.92;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1918,207,0 chrXV 915675 . G A 1426 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5983;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=18.76;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1459,156,0 chrXV 915687 . T C 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-1.254;QD=15.87;ReadPosRankSum=1.692;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:1,86:88:99:1430,159,0 chrXV 915710 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.42;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1912,204,0 chrXV 915759 . G A 1770 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.89;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1803,198,0 chrXV 915972 . C A 1829 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=21.02;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1862,198,0 chrXV 915979 . G T 1836 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.18;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,88:91:99:1869,201,0 chrXV 916053 . C T 2025 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=18.58;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2058,228,0 chrXV 916056 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.55;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2034,225,0 chrXV 916094 . C G 1749 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3347;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.76;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1782,198,0 chrXV 916104 . A G 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=105;Dels=0.00;FS=3.416;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;MQRankSum=-0.326;QD=13.97;ReadPosRankSum=1.698;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,100:105:99:1500,165,0 chrXV 916139 . A T 1746 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.98;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1779,192,0 chrXV 916839 . G A 2271 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.75;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2304,261,0 chrXV 916890 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=14.2742;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.49;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2492,270,0 chrXV 917139 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1783,198,0 chrXV 918228 . T A 2267 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2300,243,0 chrXV 918499 . G A 1960 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1993,222,0 chrXV 919101 . A T 1710 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.00;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1743,192,0 chrXV 919242 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.55;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1647,183,0 chrXV 919539 . T C 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.122;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.285;QD=19.97;ReadPosRankSum=1.676;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1271,141,0 chrXV 919734 . A G 1347 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-1.492;QD=18.45;ReadPosRankSum=-0.096;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1380,130,0 chrXV 919749 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.244;QD=17.03;ReadPosRankSum=1.683;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,70:74:99:1293,147,0 chrXV 919989 . T C 1583 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.11;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1616,183,0 chrXV 920281 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.03;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1575,171,0 chrXV 920343 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.20;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1771,195,0 chrXV 920814 . A C 1809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.350;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.019;QD=19.24;ReadPosRankSum=1.695;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1842,207,0 chrXV 920857 . G A 3056 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.25;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3089,330,0 chrXV 921242 . C A 2276 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.1747;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.47;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2309,243,0 chrXV 921473 . G A 2222 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.42;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2255,237,0 chrXV 922090 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.22;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1477,159,0 chrXV 922453 . A C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.547;QD=18.08;ReadPosRankSum=1.687;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1425,159,0 chrXV 922567 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.68;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1332,144,0 chrXV 922757 . A G 1092 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.50;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1125,123,0 chrXV 922957 . C T 404 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.36;SB=-6.655e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:437,48,0 chrXV 923567 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.279;QD=19.65;ReadPosRankSum=1.988;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1625,180,0 chrXV 923772 . A G 2346 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.33;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2379,273,0 chrXV 923922 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9561;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=17.33;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1575,171,0 chrXV 923937 . T A 1752 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.37;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1785,192,0 chrXV 924450 . T C 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=2.736;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.014;QD=21.98;ReadPosRankSum=2.396;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:2,89:91:99:2033,225,0 chrXV 924485 . A C 2003 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=94;Dels=0.00;FS=7.520;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.870;QD=21.31;ReadPosRankSum=2.396;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:2,90:94:99:2036,231,0 chrXV 924831 . T C 1112 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.44;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1145,126,0 chrXV 924975 . T A 1188 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.8036;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.00;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1221,132,0 chrXV 925008 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.03;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1169,126,0 chrXV 925525 . C T 1861 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.86;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1894,201,0 chrXV 925933 . A G 1920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.423;QD=21.33;ReadPosRankSum=1.617;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1953,222,0 chrXV 926126 . C T 1943 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.35;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1976,213,0 chrXV 926881 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.93;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1468,156,0 chrXV 926925 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1507,159,0 chrXV 927067 . T A 971 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.94;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1004,111,0 chrXV 927418 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1610,180,0 chrXV 927595 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.90;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1347,144,0 chrXV 927616 . T A 1536 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.59;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1569,165,0 chrXV 928129 . G A 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.11;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,153,0 chrXV 928399 . C T 1228 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.47;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1261,135,0 chrXV 928405 . G A 1335 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.19;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1368,144,0 chrXV 928450 . C T 1008 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.38;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1041,111,0 chrXV 928483 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.34;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1335,141,0 chrXV 928570 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.68;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1017,111,0 chrXV 928579 . T C 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.693;QD=17.18;ReadPosRankSum=1.594;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:892,99,0 chrXV 928755 . A G 1896 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.12;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1929,213,0 chrXV 928916 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.34;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1527,168,0 chrXV 929121 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.32;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2122,225,0 chrXV 929173 . C T 2146 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.06;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2179,243,0 chrXV 929593 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1666,183,0 chrXV 929887 . T C 1674 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1707,192,0 chrXV 929923 . A G 1937 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1970,219,0 chrXV 930026 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.03;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1515,168,0 chrXV 930118 . A G 2051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.933;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=-1.400;QD=21.82;ReadPosRankSum=1.658;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2084,237,0 chrXV 930244 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.78;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2031,225,0 chrXV 930310 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.94;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1359,150,0 chrXV 930799 . A G 1071 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.79;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1104,126,0 chrXV 931409 . C G 1505 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.0638;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.50;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1538,168,0 chrXV 931516 . A G 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=52.5357;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=17.37;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1110,123,0 chrXV 931568 . T C 1028 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=12.5466;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=17.13;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1061,117,0 chrXV 931616 . T C 714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.577;QD=15.87;ReadPosRankSum=1.578;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:81:747,81,0 chrXV 931623 . A G 856 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.21;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:889,99,0 chrXV 932032 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=14.91;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1077,126,0 chrXV 932327 . C T 1868 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.51;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1901,207,0 chrXV 933245 . G A 1686 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.34;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1719,183,0 chrXV 933254 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.97;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1543,168,0 chrXV 933449 . T C 1277 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.35;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1310,141,0 chrXV 933470 . C A 1057 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.92;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1090,120,0 chrXV 933555 . C T 704 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.60;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:78:737,78,0 chrXV 933560 . C T 646 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.46;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:679,75,0 chrXV 933812 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.97;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1706,183,0 chrXV 933920 . A G 1000 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.26;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1033,117,0 chrXV 934022 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.68;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1217,129,0 chrXV 934060 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1011,111,0 chrXV 934157 . C T 1843 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0963;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.04;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1876,198,0 chrXV 934286 . T C 1838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.102;QD=23.87;ReadPosRankSum=1.687;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1871,201,0 chrXV 934518 . A C 2599 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.13;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2632,288,0 chrXV 934730 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.37;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1503,171,0 chrXV 934883 . A G 2385 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.35;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2418,264,0 chrXV 935126 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.92;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1827,192,0 chrXV 935276 . T C 1527 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.104;QD=17.76;ReadPosRankSum=1.607;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,82:86:99:1560,177,0 chrXV 935480 . G C 2119 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.54;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2152,234,0 chrXV 935504 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.70;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1772,192,0 chrXV 935702 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.67;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1705,192,0 chrXV 935933 . A G 1715 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.87;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1748,189,0 chrXV 936263 . T G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=53;Dels=0.00;FS=4.065;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.238;QD=19.72;ReadPosRankSum=1.664;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,50:53:99:1078,123,0 chrXV 936401 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.17;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1003,111,0 chrXV 936534 . A T 1783 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.16;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1816,192,0 chrXV 936652 . A C 2433 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4449;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.85;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2466,273,0 chrXV 936863 . T C 2424 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.24;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2457,273,0 chrXV 936884 . C T 2699 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.88;SB=-1.479e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2732,288,0 chrXV 936962 . T C 2768 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=145;Dels=0.00;FS=8.470;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.534;QD=19.09;ReadPosRankSum=2.382;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2801,309,0 chrXV 936998 . T G 2935 PASS AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=17.90;SB=-1.714e+03 GT:AD:DP:GQ:PL 1/1:0,162:164:99:2968,330,0 chrXV 937019 . C T 2566 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=16.88;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2599,273,0 chrXV 937100 . G A 4038.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.14;SB=-1.662e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:4038,432,0 chrXV 937658 . C G 1827 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.8217;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.84;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,93:97:99:1860,201,0 chrXV 937693 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.42;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2073,216,0 chrXV 937901 . T C 1882 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.39;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1915,213,0 chrXV 937997 . G T 1906 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.72;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1939,204,0 chrXV 938134 . G T 1771 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.59;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1804,195,0 chrXV 938476 . A G 1965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2788;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.659;QD=20.68;ReadPosRankSum=1.513;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1998,219,0 chrXV 939173 . T G 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.93;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,168,0 chrXV 939212 . G A 1266 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.34;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1299,144,0 chrXV 939394 . A G 826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.388;QD=12.33;ReadPosRankSum=1.681;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,66:67:93:859,93,0 chrXV 939870 . C T 1630 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1663,174,0 chrXV 940002 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=1.039;QD=19.95;ReadPosRankSum=1.076;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1928,210,0 chrXV 940023 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.64;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2095,228,0 chrXV 940429 . T C 2230 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.08;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,100:101:99:2263,255,0 chrXV 940454 . A G 1587 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.04;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1620,177,0 chrXV 940838 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1081,117,0 chrXV 941405 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.62;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1465,159,0 chrXV 941433 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.85;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1193,132,0 chrXV 941715 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.90;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:946,105,0 chrXV 941950 . T C 1337 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.66;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1370,150,0 chrXV 942165 . C T 1560 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.67;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1593,168,0 chrXV 942309 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.61;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1504,156,0 chrXV 942317 . C T 1387 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.56;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1420,159,0 chrXV 942594 . T C 2517 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.88;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2550,282,0 chrXV 942630 . A G 2336 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.3127;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.83;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2369,255,0 chrXV 942722 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.78;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1993,225,0 chrXV 942759 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2436;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.91;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,94:97:99:2061,231,0 chrXV 943167 . A C 1910 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4613;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.91;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1943,216,0 chrXV 943283 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=81;Dels=0.00;FS=2.619;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.304;QD=20.43;ReadPosRankSum=2.836;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1688,186,0 chrXV 943688 . C T 1766 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=16.66;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1799,192,0 chrXV 944039 . A T 1863 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=12.5970;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.25;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1896,204,0 chrXV 944430 . T C 679 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=12.81;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:78:712,78,0 chrXV 945000 . C T 2640 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.2904;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.16;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2673,291,0 chrXV 945150 . A C 1445 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.57;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1478,159,0 chrXV 945252 . G A 2119 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7056;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.57;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2152,228,0 chrXV 945621 . G A 1613 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=18.54;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1646,174,0 chrXV 945624 . T C 1476 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=17.36;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1509,171,0 chrXV 945647 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.46;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1430,156,0 chrXV 945693 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=101;Dels=0.00;FS=5.478;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-0.071;QD=18.50;ReadPosRankSum=2.909;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:3,96:101:99:1902,210,0 chrXV 945747 . C T 2568 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.93;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2601,279,0 chrXV 945784 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.81;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1955,210,0 chrXV 945787 . A G 1902 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=8.071;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.565;QD=19.21;ReadPosRankSum=2.349;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:2,96:99:99:1935,213,0 chrXV 945918 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.62;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1262,135,0 chrXV 946296 . T C 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.214;QD=23.73;ReadPosRankSum=1.693;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2145,237,0 chrXV 946490 . A C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=2.723;HaplotypeScore=5.2903;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.931;QD=17.77;ReadPosRankSum=1.931;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:2,93:95:99:1721,192,0 chrXV 947691 . T C 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.498;QD=18.77;ReadPosRankSum=1.692;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1666,186,0 chrXV 947892 . A G 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=117;Dels=0.00;FS=5.376;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.698;QD=20.09;ReadPosRankSum=2.940;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2383,261,0 chrXV 948120 . G T 2007 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.82;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2040,216,0 chrXV 948387 . A G 2403 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.08;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2436,273,0 chrXV 948744 . T G 1566 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.57;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1599,174,0 chrXV 948819 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=2.648;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.921;QD=20.37;ReadPosRankSum=2.362;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1174,129,0 chrXV 949455 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=20.01;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1614,171,0 chrXV 949488 . G C 880 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=13.75;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:913,102,0 chrXV 949494 . A G 826 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=57.7793;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=12.71;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:96:859,96,0 chrXV 949570 . C G 1469 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=17.91;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1502,168,0 chrXV 949582 . G A 1531 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.14;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1564,168,0 chrXV 949640 . A C 2735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=140;Dels=0.00;FS=3.038;HaplotypeScore=10.3716;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.378;QD=19.54;ReadPosRankSum=2.397;SB=-1.661e+03 GT:AD:DP:GQ:PL 1/1:2,138:140:99:2768,309,0 chrXV 949992 . A G 2680 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.61;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2713,300,0 chrXV 950075 . A G 2555 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.136;QD=18.65;ReadPosRankSum=2.377;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:2,134:137:99:2588,285,0 chrXV 950129 . C T 2947 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.67;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2980,315,0 chrXV 950356 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.66;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1429,153,0 chrXV 950622 . T G 1057 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.54;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1090,120,0 chrXV 950741 . T C 1718 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.61;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1751,198,0 chrXV 950765 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.05;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1687,180,0 chrXV 950909 . G A 967 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.96;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1000,105,0 chrXV 950916 . A G 817 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.34;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:96:850,96,0 chrXV 951044 . T C 1262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.522;QD=19.12;ReadPosRankSum=1.627;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1295,147,0 chrXV 951548 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.87;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1367,150,0 chrXV 951742 . G C 1842 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.02;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:80:99:1875,207,0 chrXV 951869 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.05;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1617,177,0 chrXV 952020 . A G 1597 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1630,183,0 chrXV 952140 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.78;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1279,135,0 chrXV 952250 . G T 1739 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.88;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1772,189,0 chrXV 952322 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.14;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1472,165,0 chrXV 952413 . T C 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.131;DP=59;Dels=0.00;FS=8.362;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.111;QD=20.05;ReadPosRankSum=3.657;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:5,53:59:99:1216,132,0 chrXV 952654 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.97;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1231,138,0 chrXV 952737 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.67;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1484,165,0 chrXV 952962 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.22;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1122,117,0 chrXV 953078 . G T 1560 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.00;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1593,171,0 chrXV 953577 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.55;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1022,114,0 chrXV 953682 . G A 1559 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.25;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1592,171,0 chrXV 953761 . A G 1147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.253;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-1.732;QD=17.65;ReadPosRankSum=1.626;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1180,116,0 chrXV 954013 . G A 890 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.70;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:923,99,0 chrXV 954038 . T C 748 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.37;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:781,87,0 chrXV 954231 . A T 641 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.44;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:674,75,0 chrXV 954310 . G A 2114 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.75;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:2147,228,0 chrXV 954766 . A G 1643 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.716;QD=21.91;ReadPosRankSum=1.686;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1676,192,0 chrXV 955162 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.97;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1399,156,0 chrXV 955633 . G A 852 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:96:885,96,0 chrXV 956028 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.22;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1179,126,0 chrXV 956137 . C T 1103 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.21;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1136,126,0 chrXV 956617 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=16.85;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1044,117,0 chrXV 956880 . G C 1766 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=80.8177;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.02;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:98:99:1799,201,0 chrXV 957207 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.94;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:2008,210,0 chrXV 957460 . A G 1890 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.20;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1923,207,0 chrXV 957501 . G A 1513 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.61;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1546,171,0 chrXV 958088 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.4028;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.087;QD=17.47;ReadPosRankSum=2.346;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:99:1326,147,0 chrXV 958154 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1377,156,0 chrXV 958219 . A G 2165 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.683;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.768;QD=22.32;ReadPosRankSum=1.696;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2198,243,0 chrXV 958310 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.84;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1179,132,0 chrXV 958333 . C T 973 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.02;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1006,108,0 chrXV 958713 . G A 3096 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1402;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.38;SB=-1.449e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:3129,330,0 chrXV 958743 . C A 2828 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.18;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2861,303,0 chrXV 958901 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.5962;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.74;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2003,222,0 chrXV 959231 . T C 2652 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.189;QD=22.29;ReadPosRankSum=1.703;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2685,300,0 chrXV 959394 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2061,225,0 chrXV 959511 . G A 2221 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.0916;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.15;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2254,252,0 chrXV 959637 . T C 2152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.1248;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.233;QD=19.39;ReadPosRankSum=1.701;SB=-1.368e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2185,243,0 chrXV 959820 . G A 2003 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2036,219,0 chrXV 960232 . A C 799 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.65;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:832,93,0 chrXV 960346 . C A 945 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.50;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:978,105,0 chrXV 960428 . G A 645 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.81;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:678,75,0 chrXV 960509 . A C 382 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.61;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:45:415,45,0 chrXV 960575 . G A 534 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.78;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:60:567,60,0 chrXV 960599 . A G 405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.347;QD=16.20;ReadPosRankSum=1.595;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:48:438,48,0 chrXV 960624 . T A 473 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.52;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:506,54,0 chrXV 960650 . A G 355 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=16.14;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:42:388,42,0 chrXV 961004 . G A 1356 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.58;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1389,150,0 chrXV 961391 . A G 2443 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.41;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2476,276,0 chrXV 961586 . C T 1950 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.43;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1983,219,0 chrXV 962816 . C T 2436 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4236;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.00;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2469,267,0 chrXV 963149 . G A 1948 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1981,207,0 chrXV 963377 . G A 1766 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.35;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1799,198,0 chrXV 964208 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.16;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1451,156,0 chrXV 964349 . T C 1886 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=89;Dels=0.00;FS=6.480;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.070;QD=21.19;ReadPosRankSum=2.310;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1919,210,0 chrXV 964421 . A G 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.334;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.966;QD=19.79;ReadPosRankSum=1.701;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2289,255,0 chrXV 964661 . T C 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=74;Dels=0.00;FS=2.150;HaplotypeScore=10.7286;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.343;QD=18.30;ReadPosRankSum=2.768;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:3,71:74:99:1387,159,0 chrXV 965123 . A G 1817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.615;QD=20.42;ReadPosRankSum=1.654;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1850,204,0 chrXV 965240 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.35;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2149,231,0 chrXV 966067 . C A 2127 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8633;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.12;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2160,228,0 chrXV 966276 . T G 800 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.02;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:96:833,96,0 chrXV 966317 . C T 390 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=14.44;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:45:423,45,0 chrXV 966318 . A G 377 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=13.46;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:45:410,45,0 chrXV 966325 . A G 426 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=23.8070;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.584;QD=13.31;ReadPosRankSum=2.141;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:2,30:32:51:459,51,0 chrXV 966422 . T C 827 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.22;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:96:860,96,0 chrXV 966428 . C T 856 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.02;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:93:889,93,0 chrXV 966472 . G T 1766 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.41;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1799,192,0 chrXV 966610 . A G 1414 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=17.924;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.397;QD=22.09;ReadPosRankSum=1.676;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,61:64:99:1447,150,0 chrXV 966621 . A G 1388 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1421,162,0 chrXV 966892 . A G 1678 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=4.710;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.512;QD=23.31;ReadPosRankSum=1.683;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1711,189,0 chrXV 967170 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.90;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2071,222,0 chrXV 967253 . T G 2121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.917;HaplotypeScore=5.9824;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.972;QD=22.33;ReadPosRankSum=2.372;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:2,93:95:99:2154,243,0 chrXV 967506 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=13.7349;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.64;SB=-1.285e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2427,261,0 chrXV 967667 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.85;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1263,141,0 chrXV 967862 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.70;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1550,165,0 chrXV 968047 . C T 883 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.20;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:916,96,0 chrXV 968067 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.13;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:740,84,0 chrXV 968286 . T A 184.03 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=4.49;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:24:217,24,0 chrXV 968332 . T G 616 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=12.83;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:649,75,0 chrXV 968360 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=17.38;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1076,117,0 chrXV 968465 . T C 1278 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.619;QD=20.95;ReadPosRankSum=1.675;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1311,147,0 chrXV 968504 . T C 1654 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.05;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1687,183,0 chrXV 968531 . A G 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=1.417;QD=20.31;ReadPosRankSum=1.687;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1597,180,0 chrXV 968735 . G A 1212 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.04;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1245,132,0 chrXV 968918 . A T 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;MQRankSum=-0.661;QD=18.21;ReadPosRankSum=1.606;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1053,111,0 chrXV 968934 . T C 974 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=17.39;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1007,111,0 chrXV 968938 . G A 911 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=0;QD=17.86;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:944,102,0 chrXV 968942 . C T 954 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=16.74;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:987,108,0 chrXV 968970 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.43;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:922,99,0 chrXV 968991 . C T 880 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=18.33;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:913,99,0 chrXV 969023 . A G 744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=0.330;QD=17.71;ReadPosRankSum=1.650;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:87:777,87,0 chrXV 969046 . G A 481 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=15.52;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:514,57,0 chrXV 969067 . T C 359 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=14.96;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:45:392,45,0 chrXV 969164 . A G 765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.088;QD=17.79;ReadPosRankSum=1.652;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,42:43:87:798,87,0 chrXV 969198 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.15;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:66:599,66,0 chrXV 969264 . A G 989 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=20.60;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1022,111,0 chrXV 969272 . G A 916 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=19.49;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:949,105,0 chrXV 969326 . T G 715 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=0.433;QD=14.90;ReadPosRankSum=1.660;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:84:748,84,0 chrXV 969355 . A G 716 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=15.23;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:84:749,84,0 chrXV 969361 . T G 719 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=14.98;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:84:752,84,0 chrXV 969364 . T C 714 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=14.57;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:84:747,84,0 chrXV 969389 . C T 345 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=9.08;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:42:378,42,0 chrXV 969390 . T C 340 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;MQRankSum=-1.555;QD=8.72;ReadPosRankSum=1.644;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:42:373,42,0 chrXV 969502 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=19.02;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1174,132,0 chrXV 969510 . G A 1053 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=15.72;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1086,123,0 chrXV 969519 . G A 692 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=11.34;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:725,81,0 chrXV 969551 . G A 624 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=8.67;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:72:657,72,0 chrXV 969557 . C A 573 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=2.621;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;MQRankSum=-2.027;QD=7.54;ReadPosRankSum=2.774;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:66:606,66,0 chrXV 969558 . G C 546 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=7.18;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:66:579,66,0 chrXV 969591 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=15.79;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1565,168,0 chrXV 969857 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=22.03;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2324,246,0 chrXV 969936 . A G 2490 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=121;Dels=0.00;FS=3.083;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;MQRankSum=1.039;QD=20.58;ReadPosRankSum=1.703;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:1,119:121:99:2523,279,0 chrXV 969961 . A G 2413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.502;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-1.175;QD=21.54;ReadPosRankSum=1.701;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2446,270,0 chrXV 970020 . G T 2502 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=22.34;SB=-1.342e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2535,270,0 chrXV 970110 . G A 1679 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=19.08;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1712,186,0 chrXV 970113 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=19.73;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1730,189,0 chrXV 970131 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=16.46;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1284,147,0 chrXV 970141 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.82;MQ0=0;QD=16.87;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1197,132,0 chrXV 970171 . C G 1020 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=17.00;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1053,117,0 chrXV 970172 . C T 963 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=16.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:996,114,0 chrXV 970181 . C T 990 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=16.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1023,108,0 chrXV 970186 . G A 984 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=15.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1017,111,0 chrXV 970210 . A G 72.51 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.25;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,58:58:12:105,12,0 chrXV 970213 . A G 805 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.42;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:90:838,90,0 chrXV 970228 . T A 732 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:81:765,81,0 chrXV 970235 . T C 646 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.42;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,62:62:75:679,75,0 chrXV 970266 . A G 804 filter AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=11.82;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,68:68:93:837,93,0 chrXV 972651 . C A 78.51 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=23;QD=1.71;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,46:46:12:111,12,0 chrXV 972666 . G A 62.51 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.16;MQ0=14;QD=1.49;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:0,42:42:12:95,12,0 chrXV 972678 . C A 168.06 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=5;QD=3.23;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,52:52:21:201,21,0 chrXV 972690 . A G 193.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.206;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=4;MQRankSum=2.357;QD=3.27;ReadPosRankSum=0.483;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:7,52:59:24:226,24,0 chrXV 972693 . A G 191.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=4;QD=3.24;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,59:59:24:224,24,0 chrXV 972694 . T G 184.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=4;MQRankSum=2.518;QD=2.92;ReadPosRankSum=3.302;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:4,59:63:24:217,24,0 chrXV 972717 . G A 717 filter AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=21.2975;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=32;QD=3.09;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,214:232:84:750,84,0 chrXV 972777 . T C 1644 filter AC=2;AF=1.00;AN=2;DP=447;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=13.53;MQ0=91;QD=3.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,446:447:99:1677,192,0 chrXV 972828 . T C 522 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.405;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=8.9622;MLEAC=2;MLEAF=1.00;MQ=11.45;MQ0=79;MQRankSum=-1.146;QD=2.17;ReadPosRankSum=3.253;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,233:241:66:555,66,0 chrXV 973108 . G A 7003.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;DP=936;Dels=0.00;FS=11.208;HaplotypeScore=56.1884;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=4;MQRankSum=5.922;QD=7.48;ReadPosRankSum=1.361;SB=-3.275e+03 GT:AD:DP:GQ:PL 0/1:288,644:936:99:7003,0,1625 chrXV 973344 . G A 161.06 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.12;MQ0=37;QD=2.04;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,79:79:21:194,21,0 chrXV 973604 . A C 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-9.116;DP=468;Dels=0.00;FS=2.973;HaplotypeScore=11.0246;MLEAC=1;MLEAF=0.500;MQ=16.16;MQ0=72;MQRankSum=-0.054;QD=0.07;ReadPosRankSum=-0.074;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:392,72:468:63:63,0,2080 chrXV 973659 . G C 419 filter AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.19;MQ0=14;QD=3.84;SB=-6.587e-03 GT:AD:DP:GQ:PL 1/1:0,109:109:51:452,51,0 chrXV 973677 . C T 186.03 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=19.55;MQ0=9;QD=4.43;SB=-4.041e-02 GT:AD:DP:GQ:PL 1/1:0,42:42:24:219,24,0 chrXV 973916 . C T 922.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.941;DP=772;Dels=0.00;FS=1.647;HaplotypeScore=63.1883;MLEAC=1;MLEAF=0.500;MQ=23.46;MQ0=44;MQRankSum=-2.141;QD=1.19;ReadPosRankSum=-4.691;SB=-5.550e+02 GT:AD:DP:GQ:PL 0/1:493,274:772:99:952,0,5481 chrXV 973940 . C T 2543.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=9.976;DP=721;Dels=0.00;FS=0.286;HaplotypeScore=62.3236;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=27;MQRankSum=5.554;QD=3.53;ReadPosRankSum=-0.767;SB=-1.547e+03 GT:AD:DP:GQ:PL 0/1:443,265:721:99:2573,0,2860 chrXV 973957 . A G 735.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;DP=600;Dels=0.00;FS=0.747;HaplotypeScore=29.9947;MLEAC=1;MLEAF=0.500;MQ=20.35;MQ0=44;MQRankSum=0.388;QD=1.23;ReadPosRankSum=-0.828;SB=-3.960e+02 GT:AD:DP:GQ:PL 0/1:456,139:600:99:765,0,2985 chrXV 974127 . T C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.23;MQ0=3;QD=0.42;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,50:50:6:52,6,0 chrXV 974193 . G A 413 filter AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.13;MQ0=54;QD=2.74;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,151:151:48:446,48,0 chrXV 974250 . G A 663 filter AC=2;AF=1.00;AN=2;DP=265;Dels=0.00;FS=0.000;HaplotypeScore=6.3459;MLEAC=2;MLEAF=1.00;MQ=14.56;MQ0=73;QD=2.50;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,265:265:75:696,75,0 chrXV 976373 . A C 124.13 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=5.64;SB=-2.614e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:157,18,0 chrXV 976385 . T A 131.13 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=5.96;SB=-5.314e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:18:164,18,0 chrXV 976389 . G A 50.97 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=3.64;SB=-5.598e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:83,9,0 chrXV 976390 . C G 48.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=3.50;SB=-5.498e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:81,9,0 chrXV 976397 . T A 212.01 SnpCluster AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=13.25;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:27:245,27,0 chrXV 976399 . C A 213.01 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=12.53;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:27:246,27,0 chrXV 976400 . A G 198.01 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=11.65;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:27:231,27,0 chrXV 976544 . C G 795 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=34.5167;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=20.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:93:828,93,0 chrXV 976550 . T G 785 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=36.7007;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=20.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:90:818,90,0 chrXV 976552 . A G 823 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=36.7007;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;MQRankSum=1.368;QD=21.66;ReadPosRankSum=0.547;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:1,37:38:93:856,93,0 chrXV 976981 . T C 505 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=20.2880;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=17.41;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:60:538,60,0 chrXV 976993 . T G 87.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.291;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=8.0697;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=0.153;QD=2.49;ReadPosRankSum=-1.335;SB=-2.226e+01 GT:AD:DP:GQ:PL 1/1:29,6:35:15:120,15,0 chrXV 977533 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1375,147,0 chrXV 977599 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.37;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1602,174,0 chrXV 977636 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.05;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1797,201,0 chrXV 978096 . A G 1376 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.729;QD=17.87;ReadPosRankSum=1.687;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1409,159,0 chrXV 978361 . T G 2086 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.44;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2119,237,0 chrXV 978537 . A G 2104 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2706;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.15;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2137,240,0 chrXV 978614 . T G 1849 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.049;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.290;QD=19.67;ReadPosRankSum=1.622;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1882,213,0 chrXV 978665 . G A 2189 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.1190;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.27;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2222,246,0 chrXV 978778 . A C 1264 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.75;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1297,147,0 chrXV 978930 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.1364;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.28;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1952,219,0 chrXV 978953 . C A 1893 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9071;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.56;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1926,207,0 chrXV 978995 . G T 2253 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.6639;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.94;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2286,249,0 chrXV 979059 . G A 2367 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.7474;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.41;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2400,255,0 chrXV 979094 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.18;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2207,234,0 chrXV 979379 . C T 2399 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.50;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2432,261,0 chrXV 979419 . T C 2388 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=126;Dels=0.00;FS=8.199;HaplotypeScore=12.1034;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=0.953;QD=18.95;ReadPosRankSum=2.409;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:2,118:126:99:2421,270,0 chrXV 979457 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.66;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2344,249,0 chrXV 979605 . A G 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.866;QD=22.25;ReadPosRankSum=1.681;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1546,171,0 chrXV 979760 . C G 1899 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.58;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1932,219,0 chrXV 979813 . A C 2139 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.1966;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.81;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2172,240,0 chrXV 979903 . A G 2211 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=22.79;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2244,243,0 chrXV 979929 . G C 1752 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=21.37;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1785,201,0 chrXV 979973 . T A 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.01;FS=6.203;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=1.132;QD=21.23;ReadPosRankSum=2.315;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1604,171,0 chrXV 979981 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=22.87;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1497,168,0 chrXV 980032 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.57;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2125,225,0 chrXV 980448 . A G 57.51 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.04;MQ0=1;QD=4.79;SB=-4.355e+01 GT:AD:DP:GQ:PL 1/1:1,11:12:12:90,12,0 chrXV 980604 . C T 190.01 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=8.26;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:27:223,27,0 chrXV 980648 . C T 1036 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=21.14;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1069,114,0 chrXV 980701 . A T 1880 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=23.21;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1913,207,0 chrXV 980913 . C A 1969 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=22.90;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2002,213,0 chrXV 981009 . T C 2170 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.27;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2203,246,0 chrXV 981018 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=21.12;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2145,228,0 chrXV 981230 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.54;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1068,111,0 chrXV 981233 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.87;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1034,111,0 chrXV 981273 . A G 1263 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=0.403;QD=17.30;ReadPosRankSum=1.685;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1296,144,0 chrXV 981291 . T G 1326 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.22;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1359,153,0 chrXV 981304 . A T 1387 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.749;QD=18.74;ReadPosRankSum=1.685;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1420,156,0 chrXV 981378 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.26;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1079,114,0 chrXV 981447 . T C 1080 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.18;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1113,123,0 chrXV 981456 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.372;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=-0.832;QD=20.49;ReadPosRankSum=1.663;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,49:51:99:1078,117,0 chrXV 981571 . A G 1184 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.34;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1217,135,0 chrXV 981860 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.23;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1186,135,0 chrXV 982089 . A G 1282 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.02;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1315,144,0 chrXV 982131 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.70;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1342,153,0 chrXV 982145 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.23;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1163,129,0 chrXV 982160 . C T 1030 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.07;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1063,120,0 chrXV 982250 . C A 1263 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1296,141,0 chrXV 982533 . G A 1156 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.08;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1189,129,0 chrXV 982665 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.26;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2159,231,0 chrXV 982860 . C A 1822 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.70;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1855,201,0 chrXV 983290 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.90;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2323,246,0 chrXV 983366 . T C 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.760;DP=80;Dels=0.00;FS=5.545;HaplotypeScore=6.6832;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.266;QD=20.67;ReadPosRankSum=2.912;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1687,186,0 chrXV 983694 . T C 2086 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.07;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2119,237,0 chrXV 983798 . A C 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;DP=74;Dels=0.00;FS=10.983;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.792;QD=21.58;ReadPosRankSum=2.904;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:3,70:74:99:1630,183,0 chrXV 983852 . T C 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.973;QD=23.26;ReadPosRankSum=1.685;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1754,192,0 chrXV 983903 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.65;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1330,144,0 chrXV 983939 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.31;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1150,129,0 chrXV 984011 . T C 1458 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.09;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1491,168,0 chrXV 984169 . A T 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.247;QD=17.95;ReadPosRankSum=1.670;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1128,120,0 chrXV 984290 . A G 991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.389;QD=20.22;ReadPosRankSum=1.591;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1024,114,0 chrXV 984300 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.10;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1067,120,0 chrXV 984323 . C T 767 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.18;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:800,87,0 chrXV 984647 . C T 467 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=13.74;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:54:500,54,0 chrXV 984654 . T A 495 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.50;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:528,57,0 chrXV 984859 . T C 787 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.0642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.74;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:820,93,0 chrXV 984910 . T A 1092 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.00;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1125,120,0 chrXV 984992 . C T 1594 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=24.52;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1627,177,0 chrXV 985335 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9455;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.28;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1884,210,0 chrXV 985377 . A G 1266 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.787;QD=14.39;ReadPosRankSum=1.693;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1299,144,0 chrXV 985386 . A G 1161 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=13.50;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1194,135,0 chrXV 985518 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.12;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1933,216,0 chrXV 985932 . A G 1256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=6.464;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.199;QD=17.44;ReadPosRankSum=2.381;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:2,69:72:99:1289,141,0 chrXV 986343 . A G 1534 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.18;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1567,177,0 chrXV 986699 . G A 913 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.26;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:946,99,0 chrXV 986764 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=22.32;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1417,150,0 chrXV 986792 . T C 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.246;QD=22.67;ReadPosRankSum=1.611;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1325,147,0 chrXV 986838 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.01;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1874,210,0 chrXV 986977 . C T 2165 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.42;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2198,240,0 chrXV 986991 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0516;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.22;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2028,225,0 chrXV 987418 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.0383;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.29;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1923,210,0 chrXV 987547 . A G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.165;DP=82;Dels=0.00;FS=7.259;HaplotypeScore=5.1414;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.430;QD=15.93;ReadPosRankSum=4.587;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:8,74:82:99:1339,150,0 chrXV 987667 . G A 937 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.62;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:970,105,0 chrXV 988096 . G A 1413 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.41;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:66:99:1446,159,0 chrXV 988441 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.99;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1400,159,0 chrXV 988671 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.96;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:96:881,96,0 chrXV 988993 . C T 2270 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2303,252,0 chrXV 989061 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.64;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1278,138,0 chrXV 989204 . G A 2356 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.87;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2389,255,0 chrXV 989343 . G C 1362 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.92;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1395,153,0 chrXV 989690 . A G 820 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=52;Dels=0.00;FS=10.382;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.374;QD=15.77;ReadPosRankSum=-0.667;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:93:853,93,0 chrXV 989742 . A G 734 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=3.332;HaplotypeScore=9.4708;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.733;QD=14.98;ReadPosRankSum=1.339;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:87:767,87,0 chrXV 989863 . G A 636 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.71;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:669,72,0 chrXV 990949 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.96;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1488,162,0 chrXV 990952 . G T 1539 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.11;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1572,168,0 chrXV 991009 . G T 1428 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.11;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1461,153,0 chrXV 991111 . C T 1714 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.48;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1747,186,0 chrXV 991137 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.11;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1651,174,0 chrXV 991168 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.34;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1348,153,0 chrXV 991243 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.61;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1596,180,0 chrXV 991374 . A G 1553 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.91;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1586,177,0 chrXV 991545 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.61;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1445,159,0 chrXV 991595 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.60;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1955,207,0 chrXV 991649 . C A 2449 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.32;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2482,261,0 chrXV 991809 . G A 1363 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=23.91;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1396,147,0 chrXV 991825 . C T 1209 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.82;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1242,132,0 chrXV 991846 . T G 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.851;QD=15.34;ReadPosRankSum=1.674;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:938,105,0 chrXV 991864 . C T 624 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=12.00;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:69:657,69,0 chrXV 991870 . G A 618 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=12.61;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:69:651,69,0 chrXV 991945 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.71;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2001,222,0 chrXV 992008 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.191;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=-1.691;QD=17.76;ReadPosRankSum=1.650;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1543,174,0 chrXV 992014 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.49;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1549,168,0 chrXV 992083 . T C 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=4.160;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.524;QD=16.85;ReadPosRankSum=1.692;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1482,165,0 chrXV 992155 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.27;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1695,177,0 chrXV 992356 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=14.88;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1000,108,0 chrXV 992374 . A G 849 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.724;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;MQRankSum=-0.577;QD=12.67;ReadPosRankSum=1.680;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:882,99,0 chrXV 992377 . A G 851 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=0;QD=13.09;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:884,99,0 chrXV 992383 . A T 741 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=11.40;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:87:774,87,0 chrXV 992413 . C A 796 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=10.47;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:90:829,90,0 chrXV 992458 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=15.44;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1129,126,0 chrXV 992467 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=16.75;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1222,135,0 chrXV 992674 . C A 1421 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.86;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1454,159,0 chrXV 992758 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=23.22;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1705,177,0 chrXV 993116 . C G 1250 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1283,144,0 chrXV 993617 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.74;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1352,144,0 chrXV 993650 . T C 1192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.453;QD=19.23;ReadPosRankSum=1.565;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1225,138,0 chrXV 993703 . G A 1160 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.35;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1193,132,0 chrXV 993796 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.1171;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.91;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1270,135,0 chrXV 994160 . A T 761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.478;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.672;QD=15.53;ReadPosRankSum=1.662;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:84:794,84,0 chrXV 994161 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=16.50;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:825,87,0 chrXV 994342 . T C 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.116;QD=18.84;ReadPosRankSum=1.655;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:881,99,0 chrXV 994833 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1865,210,0 chrXV 994997 . G A 1022 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.44;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1055,111,0 chrXV 995489 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.61;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1870,207,0 chrXV 995783 . A C 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.582;QD=20.68;ReadPosRankSum=1.682;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1460,162,0 chrXV 996308 . A G 1991 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=97;Dels=0.00;FS=9.283;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.862;QD=20.53;ReadPosRankSum=3.347;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:4,93:97:99:2024,225,0 chrXV 996329 . C T 2114 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.57;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2147,231,0 chrXV 996462 . A G 1992 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.485;QD=19.92;ReadPosRankSum=1.697;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2025,225,0 chrXV 996585 . G C 1386 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.99;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1419,156,0 chrXV 996592 . T C 1312 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.74;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1345,147,0 chrXV 996601 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.10;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1318,147,0 chrXV 996702 . A T 1531 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.6123;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.01;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1564,168,0 chrXV 996745 . T C 1769 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.06;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1802,201,0 chrXV 996800 . G A 1207 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.49;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1240,138,0 chrXV 996801 . A G 1203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-1.195;QD=16.94;ReadPosRankSum=1.391;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1236,138,0 chrXV 996969 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.95;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1269,141,0 chrXV 996989 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.84;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1201,129,0 chrXV 997011 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.54;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1238,132,0 chrXV 997118 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.53;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1454,165,0 chrXV 997162 . T A 981 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=20.87;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1014,111,0 chrXV 997192 . A G 945 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=12.27;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:978,111,0 chrXV 997197 . T A 1023 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-1.557;QD=12.79;ReadPosRankSum=1.688;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1056,117,0 chrXV 997202 . A G 1064 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=4.277;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=-0.897;QD=12.52;ReadPosRankSum=1.690;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,82:85:99:1097,123,0 chrXV 997326 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.40;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1873,210,0 chrXV 997395 . T C 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=4.102;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.818;QD=21.76;ReadPosRankSum=1.684;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1600,177,0 chrXV 997446 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.49;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1754,189,0 chrXV 997473 . C T 1525 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.81;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1558,168,0 chrXV 997902 . G C 1330 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1363,153,0 chrXV 998046 . C T 656 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.22;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:689,75,0 chrXV 998121 . A G 320 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=13.91;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:353,39,0 chrXV 998421 . G A 901 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:99:934,99,0 chrXV 998591 . G A 1167 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.31;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:48:99:1200,129,0 chrXV 998864 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.54;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1820,192,0 chrXV 998921 . G A 2332 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.20;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2365,261,0 chrXV 999189 . C T 4033.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=19.0783;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.28;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,178:181:99:4033,424,0 chrXV 1001053 . A C 1383 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.05;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1416,159,0 chrXV 1001107 . G C 1258 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.16;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1291,141,0 chrXV 1001210 . G A 901 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.71;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:934,99,0 chrXV 1001234 . G A 955 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.49;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:988,114,0 chrXV 1001411 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.60;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1699,189,0 chrXV 1001444 . C T 1720 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.70;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1753,192,0 chrXV 1002113 . G A 992 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.75;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1025,114,0 chrXV 1002123 . T C 929 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7128;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=14.29;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:962,108,0 chrXV 1002519 . C T 2353 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.26;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2386,252,0 chrXV 1002597 . T C 1851 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.12;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1884,207,0 chrXV 1002614 . C T 1556 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.31;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1589,168,0 chrXV 1002620 . T C 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=3.590;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.606;QD=17.21;ReadPosRankSum=1.689;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1427,159,0 chrXV 1002911 . T C 2079 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.35;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2112,231,0 chrXV 1002944 . C T 1739 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.47;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1772,192,0 chrXV 1003101 . C T 1875 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=21.55;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1908,201,0 chrXV 1003120 . A T 1718 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.88;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1751,189,0 chrXV 1003121 . G A 1650 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.33;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1683,186,0 chrXV 1003427 . C A 1276 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.97;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1309,141,0 chrXV 1003494 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=15.64;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1190,129,0 chrXV 1003506 . C G 1391 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=16.36;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1424,159,0 chrXV 1003790 . T C 465 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.50;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:57:498,57,0 chrXV 1003809 . C A 391 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=15.64;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:45:424,45,0 chrXV 1003942 . G A 1013 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=26.66;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1046,108,0 chrXV 1003977 . G A 284 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=20.29;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:33:317,33,0 chrXV 1004045 . C A 134.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.77;SB=-5.688e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:167,18,0 chrXV 1004103 . A C 188.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.89;SB=-5.397e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:221,24,0 chrXV 1004149 . T C 153.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=19.13;SB=-4.781e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:186,21,0 chrXV 1004168 . A T 342 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.00;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:375,39,0 chrXV 1004312 . A C 105.26 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.54;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:15:138,15,0 chrXV 1004327 . A G 146.06 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.26;SB=-5.194e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:21:179,21,0 chrXV 1004484 . C T 77.51 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=6.6809;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=7.05;SB=-1.063e+02 GT:AD:DP:GQ:PL 1/1:0,11:11:12:110,12,0 chrXV 1004534 . T C 71.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=10.22;SB=-7.655e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:104,12,0 chrXV 1004661 . G A 487 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.14;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,21:22:57:520,57,0 chrXV 1004868 . A T 729 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:762,81,0 chrXV 1005541 . C T 1253 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1286,141,0 chrXV 1005694 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.31;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1639,183,0 chrXV 1005814 . C A 1153 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.75;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1186,129,0 chrXV 1005955 . T C 1226 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.70;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1259,141,0 chrXV 1006168 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.22;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1144,129,0 chrXV 1006228 . C A 1588 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.1012;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.01;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1621,174,0 chrXV 1006381 . T C 1055 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.44;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1088,123,0 chrXV 1006767 . A T 692 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=4.9285;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=13.31;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:725,78,0 chrXV 1006876 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.68;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1489,159,0 chrXV 1007117 . C T 1238 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.30;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1271,141,0 chrXV 1007259 . C G 1307 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.78;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1340,150,0 chrXV 1007338 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.29;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1352,150,0 chrXV 1007445 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.67;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1587,177,0 chrXV 1007511 . T C 1441 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=3.347;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=21.19;ReadPosRankSum=1.629;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1474,162,0 chrXV 1007594 . A G 1568 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.40;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1601,177,0 chrXV 1007685 . G C 1978 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.55;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2011,222,0 chrXV 1007713 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.70;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,180,0 chrXV 1008393 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.35;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1194,135,0 chrXV 1008432 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.62;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1053,117,0 chrXV 1008666 . A T 1741 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=17.77;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1774,198,0 chrXV 1008669 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.67;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1881,204,0 chrXV 1009143 . A T 109.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.825;QD=9.93;ReadPosRankSum=2.003;SB=-2.920e+01 GT:AD:DP:GQ:PL 1/1:2,9:11:15:142,15,0 chrXV 1009187 . A T 506 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.10;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:57:539,57,0 chrXV 1009233 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.84;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1151,132,0 chrXV 1009425 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2021;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.09;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1469,165,0 chrXV 1009862 . T C 2798 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6655;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.36;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2831,315,0 chrXV 1009919 . C T 2369 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.80;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2402,255,0 chrXV 1009927 . G T 2256 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.62;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2289,243,0 chrXV 1009965 . A G 1889 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.33;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:1922,213,0 chrXV 1009993 . G A 1593 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.95;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1626,171,0 chrXV 1010000 . A C 1553 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.07;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1586,180,0 chrXV 1010114 . G A 2025 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=14.57;SB=-1.625e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2058,228,0 chrXV 1010116 . A C 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.014;DP=139;Dels=0.00;FS=15.543;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.663;QD=14.42;ReadPosRankSum=4.129;SB=-1.569e+03 GT:AD:DP:GQ:PL 1/1:6,132:139:99:2037,228,0 chrXV 1010147 . T C 2128 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.4992;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=14.99;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2161,243,0 chrXV 1010424 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.168;QD=16.57;ReadPosRankSum=1.450;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1458,162,0 chrXV 1011440 . C T 2668 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.2435;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.17;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2701,297,0 chrXV 1012127 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.87;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1165,123,0 chrXV 1012998 . A G 422 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.21;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:48:455,48,0 chrXV 1013328 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.00;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1111,123,0 chrXV 1013943 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1614,180,0 chrXV 1014504 . A G 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.507;QD=19.12;ReadPosRankSum=1.592;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:1,98:100:99:1945,222,0 chrXV 1015451 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.5690;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.39;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1583,171,0 chrXV 1015648 . A G 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.258;QD=21.02;ReadPosRankSum=1.658;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2009,222,0 chrXV 1015664 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=21.18;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1918,204,0 chrXV 1015979 . A T 1177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.852;QD=18.39;ReadPosRankSum=1.622;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1210,129,0 chrXV 1015982 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.48;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:96:890,96,0 chrXV 1016156 . A G 1373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.172;DP=81;Dels=0.00;FS=13.059;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.033;QD=16.95;ReadPosRankSum=3.346;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:4,77:81:99:1406,156,0 chrXV 1016174 . A T 1620 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3923;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.52;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1653,174,0 chrXV 1016429 . A G 883 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.678;QD=19.20;ReadPosRankSum=1.506;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:916,102,0 chrXV 1017032 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.07;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1694,183,0 chrXV 1017296 . G A 1466 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.65;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1499,168,0 chrXV 1017497 . G A 1151 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.51;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1184,129,0 chrXV 1017579 . A T 1416 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.52;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1449,153,0 chrXV 1017691 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.6672;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.97;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2192,243,0 chrXV 1017967 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.55;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1753,189,0 chrXV 1018423 . G T 2452 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.1320;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.78;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,115:118:99:2485,267,0 chrXV 1018594 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.07;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1578,177,0 chrXV 1018794 . G A 1882 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.01;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1915,210,0 chrXV 1019036 . C G 1246 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.12;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1279,144,0 chrXV 1019095 . A G 917 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=60;Dels=0.00;FS=3.065;HaplotypeScore=41.8451;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=-1.668;QD=15.28;ReadPosRankSum=2.368;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:950,105,0 chrXV 1019284 . T G 1580 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.59;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1613,183,0 chrXV 1019356 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.78;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1514,165,0 chrXV 1019407 . A T 1484 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=22.83;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1517,162,0 chrXV 1019418 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=21.37;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1294,147,0 chrXV 1019470 . T C 884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.423;QD=19.64;ReadPosRankSum=1.655;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:917,102,0 chrXV 1019650 . T C 520 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=14.05;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:553,63,0 chrXV 1019659 . C T 639 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=15.97;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:72:672,72,0 chrXV 1019789 . C T 116.13 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=6.83;SB=-2.712e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:18:149,18,0 chrXV 1019800 . G C 117.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=9.76;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:150,18,0 chrXV 1019801 . T G 119.13 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=9.93;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:152,18,0 chrXV 1019806 . C T 184.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=12.27;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:24:217,24,0 chrXV 1019853 . C G 372 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.17;SB=-6.792e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:45:405,45,0 chrXV 1020003 . C T 648 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.92;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:72:681,72,0 chrXV 1020058 . C T 980 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1013,108,0 chrXV 1020116 . A G 1001 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.30;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1034,120,0 chrXV 1020132 . A G 1014 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.57;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1047,117,0 chrXV 1020191 . T C 479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-2.007;QD=17.11;ReadPosRankSum=2.275;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:57:512,57,0 chrXV 1020208 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.48;SB=-5.801e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:775,84,0 chrXV 1020452 . C A 2246 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.81;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2279,246,0 chrXV 1020508 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.48;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1687,177,0 chrXV 1020567 . A G 1703 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.52;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1736,195,0 chrXV 1020660 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1406,150,0 chrXV 1020710 . A G 1698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.561;QD=20.71;ReadPosRankSum=1.689;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1731,195,0 chrXV 1020807 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.9392;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.80;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1572,177,0 chrXV 1021257 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1746,195,0 chrXV 1021311 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1238,132,0 chrXV 1021635 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1993,222,0 chrXV 1021923 . G T 1751 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.85;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1784,195,0 chrXV 1022325 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.64;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:88:99:1761,189,0 chrXV 1022391 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.90;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1496,162,0 chrXV 1022713 . C G 1311 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.57;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1344,147,0 chrXV 1023174 . T C 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=73;Dels=0.01;FS=17.705;HaplotypeScore=5.5101;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.509;QD=18.84;ReadPosRankSum=3.655;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:5,67:72:99:1408,153,0 chrXV 1023427 . T C 1283 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.758;QD=20.05;ReadPosRankSum=1.678;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1316,144,0 chrXV 1023697 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.36;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1208,132,0 chrXV 1023944 . A T 1939 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=24.54;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1972,210,0 chrXV 1024047 . G T 1307 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.34;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1340,147,0 chrXV 1024262 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.55;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1718,192,0 chrXV 1024298 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=17.64;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1409,150,0 chrXV 1024308 . G A 1237 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=17.42;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1270,135,0 chrXV 1024343 . T C 782 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=11.33;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:69:93:815,93,0 chrXV 1024346 . C T 781 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=14.20;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:87:814,87,0 chrXV 1024352 . T C 866 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=15.75;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:899,99,0 chrXV 1024379 . T C 895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=6.284;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.393;QD=17.55;ReadPosRankSum=1.597;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:928,105,0 chrXV 1024421 . T G 1348 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.74;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1381,150,0 chrXV 1024543 . A G 1286 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.09;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1319,144,0 chrXV 1024678 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=25.06;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1311,138,0 chrXV 1024766 . A G 1107 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.71;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1140,126,0 chrXV 1025597 . T C 2373 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=105;Dels=0.00;FS=5.806;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.741;QD=22.60;ReadPosRankSum=2.914;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2406,267,0 chrXV 1025751 . C T 1521 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.89;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1554,168,0 chrXV 1025760 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5446;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.53;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1289,138,0 chrXV 1025857 . T C 2577 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-1.297e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2610,294,0 chrXV 1026039 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.14;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1926,204,0 chrXV 1026427 . A C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.994;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.520;QD=22.80;ReadPosRankSum=1.675;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1401,156,0 chrXV 1026836 . T C 1414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.773;QD=21.42;ReadPosRankSum=0.613;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1447,159,0 chrXV 1026863 . A G 1634 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0957;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.50;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1667,186,0 chrXV 1026977 . G C 2669 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-1.529e+03 GT:AD:DP:GQ:PL 1/1:0,120:123:99:2702,294,0 chrXV 1027094 . A G 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=2.520;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.528;QD=19.77;ReadPosRankSum=2.936;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:3,106:109:99:2188,240,0 chrXV 1028091 . A T 848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.575;QD=18.84;ReadPosRankSum=1.654;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:93:881,93,0 chrXV 1029077 . A C 914 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:947,108,0 chrXV 1029127 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1945,210,0 chrXV 1029990 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.66;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1743,189,0 chrXV 1030315 . C A 1150 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.91;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1183,129,0 chrXV 1030332 . G T 1490 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.59;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1523,165,0 chrXV 1030847 . A G 1744 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=15.85;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1777,198,0 chrXV 1031126 . T C 1712 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.95;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1745,198,0 chrXV 1031303 . A G 937 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.82;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:970,108,0 chrXV 1031632 . C T 1684 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.07;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1717,186,0 chrXV 1031678 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2915;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.492;QD=20.36;ReadPosRankSum=1.588;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1499,171,0 chrXV 1032017 . T C 2128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.707;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.513;QD=19.70;ReadPosRankSum=1.636;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2161,243,0 chrXV 1032089 . T C 2695 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.39;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,138:139:99:2728,300,0 chrXV 1032162 . T C 2169 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=16.31;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2202,246,0 chrXV 1032536 . C A 2807 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.59;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2840,300,0 chrXV 1032998 . G A 2259 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.03;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2292,249,0 chrXV 1033361 . A T 2328 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1722;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.96;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2361,255,0 chrXV 1033439 . T G 1549 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=18.66;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1582,180,0 chrXV 1033446 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.09;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1615,171,0 chrXV 1034221 . G T 1632 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.36;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1665,177,0 chrXV 1034311 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.63;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1807,198,0 chrXV 1034515 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.65;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2434,255,0 chrXV 1034658 . T G 1215 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.50;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1248,138,0 chrXV 1034962 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.96;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1458,159,0 chrXV 1035182 . A G 806 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.39;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:839,93,0 chrXV 1035290 . C T 1202 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1235,141,0 chrXV 1035608 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.70;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1668,180,0 chrXV 1035656 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1450,156,0 chrXV 1036058 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.85;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1290,144,0 chrXV 1036154 . T C 106.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4667;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=0;MQRankSum=-1.677;QD=1.71;ReadPosRankSum=-3.258;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,8:62:99:136,0,226 chrXV 1036157 . T C 60.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=-1.385;QD=1.03;ReadPosRankSum=-3.435;SB=-1.001e+01 GT:AD:DP:GQ:PL 0/1:53,5:58:90:90,0,216 chrXV 1036160 . T C 200.03 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=0;MQRankSum=1.274;QD=3.39;ReadPosRankSum=3.657;SB=-6.700e+02 GT:AD:DP:GQ:PL 0/1:6,53:59:19:230,0,19 chrXV 1036163 . T C 238.51 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=1.363;QD=3.98;ReadPosRankSum=2.743;SB=-6.865e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:12:271,12,0 chrXV 1036343 . A G 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=8.675;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.055;QD=21.70;ReadPosRankSum=2.340;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1487,165,0 chrXV 1036412 . G A 1959 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.26;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1992,213,0 chrXV 1036829 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.22;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1671,180,0 chrXV 1036992 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.25;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1498,162,0 chrXV 1037142 . T C 1240 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.33;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1273,141,0 chrXV 1037163 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.11;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1320,141,0 chrXV 1037514 . A C 403 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=18.32;SB=-6.653e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:48:436,48,0 chrXV 1037520 . T C 405 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.29;SB=-6.648e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:48:438,48,0 chrXV 1037523 . T C 374 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.70;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:407,45,0 chrXV 1037526 . T C 353 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.61;SB=-6.998e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:386,42,0 chrXV 1037529 . T C 298.26 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.306;QD=17.54;ReadPosRankSum=1.123;SB=-2.384e-01 GT:AD:DP:GQ:PL 1/1:1,16:17:15:331,15,0 chrXV 1037552 . G A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=1.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:15:6:54,6,0 chrXV 1037595 . G C 1510 filter AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1543,171,0 chrXV 1037751 . C T 781 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:87:814,87,0 chrXV 1037757 . A G 644 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=15.71;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:75:677,75,0 chrXV 1037977 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.57;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2190,234,0 chrXV 1038496 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.97;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1417,156,0 chrXV 1038535 . C T 1304 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.18;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1337,144,0 chrXV 1038675 . T C 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.438;QD=21.68;ReadPosRankSum=1.694;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2006,222,0 chrXV 1038711 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.45;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1251,138,0 chrXV 1038714 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.72;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1231,135,0 chrXV 1038822 . G T 1522 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.74;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1555,165,0 chrXV 1039293 . G A 1594 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2897;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.25;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1627,180,0 chrXV 1039398 . C T 1840 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=13.0488;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.52;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1873,201,0 chrXV 1039540 . T A 1248 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.46;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1281,135,0 chrXV 1039586 . A G 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.793;QD=16.25;ReadPosRankSum=1.615;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:992,111,0 chrXV 1039607 . A T 1033 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.207;QD=15.65;ReadPosRankSum=1.680;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1066,114,0 chrXV 1039786 . A G 1853 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.06;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1886,207,0 chrXV 1040442 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.45;SB=-1.000e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1878,198,0 chrXV 1040775 . T C 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.00;FS=3.245;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.912;QD=18.86;ReadPosRankSum=1.641;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1504,171,0 chrXV 1040793 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.39;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1681,186,0 chrXV 1041018 . T C 1996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.740;DP=97;Dels=0.00;FS=5.338;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.865;QD=20.58;ReadPosRankSum=2.928;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:2029,228,0 chrXV 1041126 . A T 2146 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.35;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2179,237,0 chrXV 1041177 . A G 1386 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.38;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1419,159,0 chrXV 1041571 . G A 612 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:69:645,69,0 chrXV 1041617 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1125,117,0 chrXV 1042440 . A G 1913 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1946,216,0 chrXV 1042833 . C T 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.027;QD=20.62;ReadPosRankSum=1.457;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1332,121,0 chrXV 1043118 . T C 1795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=6.566;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.257;QD=19.73;ReadPosRankSum=2.396;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,89:91:99:1828,201,0 chrXV 1043121 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.27;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1878,198,0 chrXV 1043151 . A T 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.713;HaplotypeScore=7.1205;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.055;QD=18.60;ReadPosRankSum=1.692;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1670,183,0 chrXV 1043458 . T C 1533 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.41;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1566,180,0 chrXV 1043737 . C G 1378 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.62;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1411,156,0 chrXV 1043801 . G A 723 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=12.25;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:84:756,84,0 chrXV 1043807 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=14.02;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:90:832,90,0 chrXV 1043837 . A G 857 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=13.39;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:890,99,0 chrXV 1043845 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=12.99;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:929,105,0 chrXV 1044139 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.47;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1561,168,0 chrXV 1044165 . A G 1040 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=56;Dels=0.00;FS=11.463;HaplotypeScore=7.1045;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.831;QD=18.57;ReadPosRankSum=2.719;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:3,52:56:99:1073,120,0 chrXV 1044459 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.30;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1474,156,0 chrXV 1044504 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.15;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1362,144,0 chrXV 1044558 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.060;DP=61;Dels=0.00;FS=9.492;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-0.769;QD=15.67;ReadPosRankSum=3.302;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:4,55:61:99:989,108,0 chrXV 1044559 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=16.97;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1051,114,0 chrXV 1044645 . G A 1785 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.83;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1818,192,0 chrXV 1045051 . A G 1813 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.37;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1846,210,0 chrXV 1045091 . T A 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=105;Dels=0.00;FS=13.904;HaplotypeScore=8.1866;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.862;QD=21.48;ReadPosRankSum=3.273;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:4,101:105:99:2288,243,0 chrXV 1045111 . T C 2057 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.59;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2090,231,0 chrXV 1045263 . T A 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=2.991;HaplotypeScore=2.8248;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=0.436;QD=19.73;ReadPosRankSum=1.548;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1651,189,0 chrXV 1045264 . A T 1623 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=82;Dels=0.00;FS=5.336;HaplotypeScore=2.8248;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-0.127;QD=19.79;ReadPosRankSum=0.634;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1656,189,0 chrXV 1045298 . C G 1452 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.17;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1485,165,0 chrXV 1045483 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=18.79;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1912,207,0 chrXV 1045508 . T G 1319 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=16.49;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1352,150,0 chrXV 1045603 . A T 79.51 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=1.12;SB=-6.365e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:12:112,12,0 chrXV 1045615 . G A 218.01 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=2.66;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:27:251,27,0 chrXV 1045703 . A C 1645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.140;QD=21.36;ReadPosRankSum=1.687;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1678,186,0 chrXV 1046363 . A G 1102 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.405;QD=20.41;ReadPosRankSum=1.667;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1135,123,0 chrXV 1046564 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.890;QD=20.91;ReadPosRankSum=1.685;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1580,174,0 chrXV 1047359 . C A 1254 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.59;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1287,141,0 chrXV 1047398 . T A 1574 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.15;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1607,171,0 chrXV 1047512 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.00;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:90:99:1923,210,0 chrXV 1047566 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.44;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1674,186,0 chrXV 1047599 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.88;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1325,141,0 chrXV 1047731 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.63;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1232,129,0 chrXV 1047746 . T C 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=3.010;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.472;QD=16.91;ReadPosRankSum=1.680;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:1,65:68:99:1183,132,0 chrXV 1047779 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.99;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1400,150,0 chrXV 1047912 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.51;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1791,192,0 chrXV 1047968 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.37;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1405,156,0 chrXV 1047996 . G C 1854 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=17.6895;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.00;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1887,213,0 chrXV 1048033 . A G 2183 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.21;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2216,249,0 chrXV 1048050 . C T 2013 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=19.54;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2046,222,0 chrXV 1048059 . T C 2043 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=19.46;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2076,237,0 chrXV 1048103 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.34;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1262,138,0 chrXV 1048151 . A G 1141 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=12.97;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1174,132,0 chrXV 1048158 . T G 1061 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=12.20;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1094,123,0 chrXV 1048159 . T C 1098 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=12.62;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1131,129,0 chrXV 1048182 . A C 900 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=10.59;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:933,105,0 chrXV 1048196 . A G 1123 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;MQRankSum=-0.759;QD=12.62;ReadPosRankSum=1.693;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1156,132,0 chrXV 1048227 . C A 863 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.15;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:96:896,96,0 chrXV 1048427 . T C 794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;MQRankSum=-0.318;QD=11.51;ReadPosRankSum=2.804;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:5,64:69:96:827,96,0 chrXV 1048437 . C T 802 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=11.79;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:835,96,0 chrXV 1048488 . C T 1187 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=18.84;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1220,129,0 chrXV 1048531 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.88;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1544,171,0 chrXV 1048565 . C G 1451 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.32;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1484,165,0 chrXV 1048767 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.40;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:953,108,0 chrXV 1048836 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.68;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1702,189,0 chrXV 1048841 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.25;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1724,186,0 chrXV 1048886 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.19;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1580,174,0 chrXV 1048953 . T C 2368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.386;QD=23.68;ReadPosRankSum=1.697;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2401,258,0 chrXV 1048990 . T C 2964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=22.80;ReadPosRankSum=2.393;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2997,333,0 chrXV 1049114 . G A 1507 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.2327;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.32;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1540,165,0 chrXV 1049580 . A G 1827 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=7.189;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.218;QD=21.49;ReadPosRankSum=2.391;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1860,207,0 chrXV 1049615 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.40;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1870,198,0 chrXV 1049756 . T C 2073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=105;Dels=0.00;FS=7.854;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.203;QD=19.74;ReadPosRankSum=2.402;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:2,102:105:99:2106,234,0 chrXV 1049902 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.39;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1664,183,0 chrXV 1050066 . T G 1835 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.17;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1868,213,0 chrXV 1050281 . T C 2186 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.00;FS=6.137;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.011;QD=19.01;ReadPosRankSum=2.406;SB=-1.406e+03 GT:AD:DP:GQ:PL 1/1:2,111:115:99:2219,249,0 chrXV 1050311 . G T 2143 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.4982;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.01;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2176,237,0 chrXV 1050335 . C T 2288 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.7101;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.25;SB=-1.346e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2321,249,0 chrXV 1050809 . T C 2095 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9801;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.22;SB=-1.430e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2128,237,0 chrXV 1050821 . A G 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9171;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.266;QD=18.02;ReadPosRankSum=1.699;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1907,216,0 chrXV 1051162 . G A 1884 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.17;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1917,204,0 chrXV 1051227 . A G 2103 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=23.11;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2136,237,0 chrXV 1051258 . T C 1765 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.40;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1798,201,0 chrXV 1051267 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=17.95;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1559,171,0 chrXV 1051284 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3273;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.34;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1647,177,0 chrXV 1051319 . A G 1224 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=71;Dels=0.00;FS=4.752;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.156;QD=17.24;ReadPosRankSum=0.886;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1257,123,0 chrXV 1051487 . A G 2037 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.69;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2070,234,0 chrXV 1051607 . G A 2436 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.00;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2469,264,0 chrXV 1051637 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=16.75;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:1926,204,0 chrXV 1051814 . G T 3478.01 PASS AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=10.7163;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.22;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,181:181:99:3478,381,0 chrXV 1051958 . C G 1938 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.40;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1971,222,0 chrXV 1051994 . C T 1864 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.67;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:86:99:1897,201,0 chrXV 1052051 . T A 1407 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8788;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.81;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1440,168,0 chrXV 1052288 . A C 2768 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.46;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2801,309,0 chrXV 1052408 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1892,204,0 chrXV 1052746 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.15;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2106,228,0 chrXV 1052900 . A T 2280 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2023;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.49;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2313,249,0 chrXV 1053054 . C T 1927 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.90;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1960,210,0 chrXV 1053103 . A T 1229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.371;QD=21.95;ReadPosRankSum=-0.557;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1262,135,0 chrXV 1053179 . G A 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.072;QD=24.10;ReadPosRankSum=1.516;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1214,129,0 chrXV 1053218 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=24.13;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1722,186,0 chrXV 1053246 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;QD=22.54;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1498,168,0 chrXV 1053278 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=18.04;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1242,141,0 chrXV 1053286 . A G 1129 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=18.82;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1162,129,0 chrXV 1053302 . G T 867 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=18.85;SB=-4.401e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:96:900,96,0 chrXV 1053324 . C T 763 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=36.7189;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=18.17;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:796,84,0 chrXV 1053325 . C T 742 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=36.7189;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=17.67;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:84:775,84,0 chrXV 1053378 . T C 558 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=14.68;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:591,66,0 chrXV 1053394 . G A 619 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=15.10;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:69:652,69,0 chrXV 1053408 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=17.29;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:569,60,0 chrXV 1053414 . T A 515 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=14.31;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:548,60,0 chrXV 1053506 . G T 542 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=14.65;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:63:575,63,0 chrXV 1053511 . C T 539 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.85;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:60:572,60,0 chrXV 1053584 . T A 121.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=9.32;SB=-2.814e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:154,18,0 chrXV 1053586 . T G 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=15;Dels=0.00;FS=8.751;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;MQRankSum=-0.116;QD=8.80;ReadPosRankSum=1.273;SB=-2.707e+01 GT:AD:DP:GQ:PL 1/1:1,14:15:21:165,21,0 chrXV 1053595 . C T 162.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=13.51;SB=-2.906e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:21:195,21,0 chrXV 1053727 . T C 887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=-1.096;QD=18.10;ReadPosRankSum=1.662;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:920,102,0 chrXV 1053732 . G A 846 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=16.27;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:879,99,0 chrXV 1053752 . A G 794 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=15.88;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:93:827,93,0 chrXV 1053769 . C T 501 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=12.22;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:57:534,57,0 chrXV 1053770 . G A 486 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=11.57;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:42:57:519,57,0 chrXV 1053882 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=18.29;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:783,84,0 chrXV 1053942 . G A 707 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=14.14;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:740,81,0 chrXV 1053953 . C T 647 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.48;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:78:680,78,0 chrXV 1054123 . G A 829 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.42;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:862,99,0 chrXV 1054204 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.23;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1668,174,0 chrXV 1054263 . A G 1784 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.24;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1817,198,0 chrXV 1054294 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.68;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1596,177,0 chrXV 1054347 . G C 870 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=16.73;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:903,99,0 chrXV 1054352 . G T 786 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.09;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:87:819,87,0 chrXV 1054371 . G A 646 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.15;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:679,72,0 chrXV 1054416 . A G 898 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.96;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:931,102,0 chrXV 1054511 . A G 1082 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.98;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1115,123,0 chrXV 1054794 . A G 801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.181;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7630;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.787;QD=17.80;ReadPosRankSum=1.654;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,43:45:93:834,93,0 chrXV 1054799 . A G 745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.5390;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.646;QD=18.62;ReadPosRankSum=1.126;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:84:778,84,0 chrXV 1054920 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.64;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1292,138,0 chrXV 1054937 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=17.76;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:63:99:1152,126,0 chrXV 1055015 . A G 1383 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=19.21;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1416,162,0 chrXV 1055026 . A C 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=9.420;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.123;QD=19.70;ReadPosRankSum=2.309;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1412,159,0 chrXV 1055044 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.27;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1513,165,0 chrXV 1055076 . G C 1492 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.42;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1525,171,0 chrXV 1055157 . A G 1204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=3.945;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.335;QD=19.11;ReadPosRankSum=1.676;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1237,135,0 chrXV 1055169 . T A 1201 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.66;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1234,129,0 chrXV 1055227 . T A 660 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.2832;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=17.37;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:75:693,75,0 chrXV 1055325 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.85;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1162,129,0 chrXV 1055396 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.06;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1864,195,0 chrXV 1055524 . T C 1750 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.414;QD=19.02;ReadPosRankSum=1.619;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1783,198,0 chrXV 1055525 . T C 1669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=0.038;QD=18.34;ReadPosRankSum=1.694;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1702,186,0 chrXV 1055801 . G A 2780 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.0472;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.06;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2813,300,0 chrXV 1055838 . C T 2609 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.92;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2642,282,0 chrXV 1055878 . G A 2416 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.83;SB=-1.328e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2449,267,0 chrXV 1055920 . A G 2751 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.83;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2784,306,0 chrXV 1056175 . A C 1491 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.18;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1524,171,0 chrXV 1056183 . T C 1561 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=7.230;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.983;QD=17.34;ReadPosRankSum=2.394;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1594,177,0 chrXV 1056207 . C G 1273 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=15.91;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1306,144,0 chrXV 1056258 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.33;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1321,144,0 chrXV 1056279 . C T 1364 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.94;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1397,150,0 chrXV 1056327 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=16.79;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1494,165,0 chrXV 1056358 . A G 1877 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.17;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1910,210,0 chrXV 1056412 . C T 2059 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.67;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2092,225,0 chrXV 1056618 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.28;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1351,150,0 chrXV 1056819 . T C 1748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=88;Dels=0.00;FS=2.780;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.332;QD=19.86;ReadPosRankSum=2.364;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,84:88:99:1781,201,0 chrXV 1056865 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.0181;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.77;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2101,225,0 chrXV 1056939 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2075;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.31;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1922,216,0 chrXV 1056959 . A C 1968 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.68;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2001,219,0 chrXV 1056993 . C T 1962 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=19.82;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1995,213,0 chrXV 1057081 . T C 3121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=7.880;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.757;QD=22.62;ReadPosRankSum=2.378;SB=-1.343e+03 GT:AD:DP:GQ:PL 1/1:2,136:138:99:3154,357,0 chrXV 1057468 . A T 2032 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=19.92;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2065,225,0 chrXV 1057474 . G C 1845 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.84;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1878,207,0 chrXV 1057489 . A G 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.081;QD=17.69;ReadPosRankSum=1.692;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1572,174,0 chrXV 1057536 . A G 1024 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.758;QD=16.00;ReadPosRankSum=1.678;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1057,117,0 chrXV 1057626 . T C 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=7.782;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.898;QD=16.19;ReadPosRankSum=1.540;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:907,102,0 chrXV 1057751 . C G 1313 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.52;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1346,147,0 chrXV 1057752 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=20.27;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1330,147,0 chrXV 1057774 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.47;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1104,120,0 chrXV 1057907 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.26;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:69:630,69,0 chrXV 1057969 . A T 360 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=9.47;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:45:393,45,0 chrXV 1057993 . C T 181.03 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=5.49;SB=-7.704e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:24:214,24,0 chrXV 1058006 . G A 275 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=6.88;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:33:308,33,0 chrXV 1058015 . A T 276 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=5.75;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:309,33,0 chrXV 1058016 . A T 281 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=5.85;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:33:314,33,0 chrXV 1058024 . A C 211.64 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;MQRankSum=-0.069;QD=4.23;ReadPosRankSum=1.039;SB=-3.636e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:11:244,11,0 chrXV 1058045 . A C 293 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=5.75;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:36:326,36,0 chrXV 1058063 . G C 272 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=6.63;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:305,33,0 chrXV 1058065 . T C 269 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=6.56;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:33:302,33,0 chrXV 1058190 . T C 962 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.46;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:995,111,0 chrXV 1058342 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=19.23;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:71:99:1398,153,0 chrXV 1058421 . T A 1237 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=15.66;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1270,147,0 chrXV 1058494 . G A 2417 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=25.99;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2450,258,0 chrXV 1058538 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.42;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2133,234,0 chrXV 1058568 . A G 1816 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.54;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1849,207,0 chrXV 1058627 . T G 1395 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.47;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1428,162,0 chrXV 1058657 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.49;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1513,159,0 chrXV 1058775 . T C 1301 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.33;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1334,150,0 chrXV 1058791 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.756;QD=20.58;ReadPosRankSum=1.683;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1515,168,0 chrXV 1058818 . G C 1507 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=18.16;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1540,174,0 chrXV 1058868 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=13.14;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:966,105,0 chrXV 1058977 . G C 1680 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.11;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1713,189,0 chrXV 1059193 . A G 796 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.41;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:93:829,93,0 chrXV 1059223 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.04;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1022,114,0 chrXV 1059487 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.79;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1697,183,0 chrXV 1059502 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=1.319;QD=21.05;ReadPosRankSum=2.347;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1570,174,0 chrXV 1059558 . A G 2340 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.87;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,100:107:99:2373,261,0 chrXV 1059725 . T C 2301 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.91;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2334,261,0 chrXV 1059727 . C G 2267 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.23;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2300,249,0 chrXV 1059872 . C A 1246 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=16.84;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1279,141,0 chrXV 1059890 . C T 725 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=11.69;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:84:758,84,0 chrXV 1060089 . A G 1052 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=-0.866;QD=17.53;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1085,120,0 chrXV 1060103 . G A 1041 filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=16.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1074,117,0 chrXV 1060135 . C T 838 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=15.81;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:96:871,96,0 chrXV 1060136 . A G 871 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.1635;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=-1.667;QD=16.43;ReadPosRankSum=1.667;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:96:904,96,0 chrXV 1060145 . G A 814 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=36.3489;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=16.28;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:90:847,90,0 chrXV 1060239 . T C 1096 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=26.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1129,120,0 chrXV 1060419 . C T 2178 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=25.03;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2211,240,0 chrXV 1060654 . G A 2018 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.02;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2051,225,0 chrXV 1060732 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.8531;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=1;QD=21.42;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2411,264,0 chrXV 1060864 . G A 1382 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.46;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1415,153,0 chrXV 1061020 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.52;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1891,204,0 chrXV 1061061 . G A 1079 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.29;SB=-1.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1112,120,0 chrXV 1061596 . G A 1714 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.90;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1747,195,0 chrXV 1061626 . A G 2052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.523;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.632;QD=24.14;ReadPosRankSum=1.691;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2085,231,0 chrXV 1061963 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.33;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1825,204,0 chrXV 1062226 . G A 2435 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.14;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2468,264,0 chrXV 1062538 . A G 2918 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.85;SB=-1.586e+03 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2951,330,0 chrXV 1062547 . C T 3051 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.95;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:0,160:161:99:3084,345,0 chrXV 1062786 . C T 1763 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.50;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1796,201,0 chrXV 1062865 . G A 2233 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.87;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2266,243,0 chrXV 1063177 . C T 1803 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.59;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1836,198,0 chrXV 1063183 . G A 1734 SnpCluster AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.34;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1767,186,0 chrXV 1063186 . G A 1763 SnpCluster AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=16.79;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1796,195,0 chrXV 1063375 . A G 2997 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.8394;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.96;SB=-1.749e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:3030,336,0 chrXV 1063605 . G C 1420 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.44;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1453,162,0 chrXV 1063841 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.87;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1493,168,0 chrXV 1063847 . G A 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;MQRankSum=-1.142;QD=15.14;ReadPosRankSum=1.693;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1365,153,0 chrXV 1064163 . G A 1905 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.27;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1938,207,0 chrXV 1064229 . A G 2236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.917;QD=21.92;ReadPosRankSum=1.698;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:2269,252,0 chrXV 1064267 . T C 2295 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=15.1203;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.65;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2328,258,0 chrXV 1064342 . G A 2816 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.71;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2849,303,0 chrXV 1064590 . T A 2077 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=21.64;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2110,225,0 chrXV 1064897 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=13.44;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1404,153,0 chrXV 1064921 . A G 934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=-1.253;QD=9.94;ReadPosRankSum=1.695;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:967,108,0 chrXV 1064926 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.13;MQ0=0;QD=9.83;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:937,105,0 chrXV 1064944 . C T 644 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=6.92;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:75:677,75,0 chrXV 1064948 . A G 508 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=5.91;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:63:541,63,0 chrXV 1064952 . C T 488 SnpCluster AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=5.61;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:57:521,57,0 chrXV 1065076 . G C 69.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;DP=93;Dels=0.00;FS=28.907;HaplotypeScore=5.7215;MLEAC=1;MLEAF=0.500;MQ=51.60;MQ0=0;MQRankSum=-6.907;QD=0.74;ReadPosRankSum=-0.919;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:62,28:93:99:99,0,1015 chrXV 1065089 . G A 313.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;DP=111;Dels=0.00;FS=17.180;HaplotypeScore=4.8903;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-6.748;QD=2.82;ReadPosRankSum=-1.585;SB=-3.420e+02 GT:AD:DP:GQ:PL 0/1:64,46:111:99:343,0,911 chrXV 1065111 . C G 538.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DP=108;Dels=0.00;FS=12.945;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=50.87;MQ0=0;MQRankSum=-5.519;QD=4.98;ReadPosRankSum=1.231;SB=-4.510e+02 GT:AD:DP:GQ:PL 0/1:55,52:108:99:568,0,905 chrXV 1065166 . A G 957.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;DP=133;Dels=0.00;FS=0.652;HaplotypeScore=10.9667;MLEAC=1;MLEAF=0.500;MQ=49.55;MQ0=0;MQRankSum=5.053;QD=7.20;ReadPosRankSum=0.346;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:73,60:133:99:987,0,1087 chrXV 1065304 . G A 443.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;DP=100;Dels=0.00;FS=5.471;HaplotypeScore=10.4508;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=0;MQRankSum=-0.181;QD=4.43;ReadPosRankSum=-0.425;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:68,32:100:99:473,0,1168 chrXV 1065320 . C T 542.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.468;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=1;MLEAF=0.500;MQ=50.20;MQ0=0;MQRankSum=-2.527;QD=5.71;ReadPosRankSum=-1.044;SB=-3.240e+02 GT:AD:DP:GQ:PL 0/1:61,34:95:99:572,0,927 chrXV 1065362 . A T 583.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.358;DP=94;Dels=0.00;FS=2.733;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=51.24;MQ0=0;MQRankSum=-3.741;QD=6.20;ReadPosRankSum=1.476;SB=-3.280e+02 GT:AD:DP:GQ:PL 0/1:50,43:94:99:613,0,745 chrXV 1065393 . T A 914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;DP=97;Dels=0.00;FS=4.349;HaplotypeScore=14.3249;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=-3.231;QD=9.42;ReadPosRankSum=0.622;SB=-4.550e+02 GT:AD:DP:GQ:PL 0/1:40,57:97:99:944,0,390 chrXV 1065443 . A G 539.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;DP=109;Dels=0.00;FS=1.565;HaplotypeScore=13.3529;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=3.576;QD=4.95;ReadPosRankSum=-0.258;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:67,42:109:99:569,0,1056 chrXV 1065461 . A G 1156.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.435;DP=122;Dels=0.00;FS=5.833;HaplotypeScore=11.3330;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.008;QD=9.48;ReadPosRankSum=1.055;SB=-5.010e+02 GT:AD:DP:GQ:PL 0/1:50,71:122:99:1186,0,739 chrXV 1065522 . A G 3544.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=149;Dels=0.00;FS=5.604;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.314;QD=23.79;ReadPosRankSum=1.662;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,148:149:99:3544,387,0 chrXV 1065565 . T C 1437.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.466;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-0.322;QD=8.76;ReadPosRankSum=-0.283;SB=-4.070e+02 GT:AD:DP:GQ:PL 0/1:83,81:164:99:1467,0,1696 chrXV 1065584 . G A 1073.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.026;DP=141;Dels=0.00;FS=2.614;HaplotypeScore=7.7085;MLEAC=1;MLEAF=0.500;MQ=51.43;MQ0=0;MQRankSum=-0.296;QD=7.61;ReadPosRankSum=1.079;SB=-2.630e+02 GT:AD:DP:GQ:PL 0/1:75,66:141:99:1103,0,1389 chrXV 1065620 . T A 1107.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.222;DP=145;Dels=0.00;FS=0.651;HaplotypeScore=10.1293;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-1.367;QD=7.63;ReadPosRankSum=-0.691;SB=-4.790e+02 GT:AD:DP:GQ:PL 0/1:74,71:145:99:1137,0,1503 chrXV 1065654 . T C 985.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.742;DP=118;Dels=0.00;FS=2.430;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=0;MQRankSum=-0.194;QD=8.35;ReadPosRankSum=0.032;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:59,59:118:99:1015,0,1043 chrXV 1065715 . G A 1288.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.146;DP=120;Dels=0.00;FS=2.433;HaplotypeScore=9.3547;MLEAC=1;MLEAF=0.500;MQ=45.38;MQ0=0;MQRankSum=-0.156;QD=10.73;ReadPosRankSum=0.611;SB=-4.980e+02 GT:AD:DP:GQ:PL 0/1:53,67:120:99:1318,0,945 chrXV 1065778 . T C 1388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.696;DP=126;Dels=0.00;FS=4.436;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=1.611;QD=11.02;ReadPosRankSum=0.297;SB=-5.990e+02 GT:AD:DP:GQ:PL 0/1:53,73:126:99:1418,0,1009 chrXV 1065807 . A G 875.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.319;DP=152;Dels=0.00;FS=2.045;HaplotypeScore=4.2973;MLEAC=1;MLEAF=0.500;MQ=53.27;MQ0=0;MQRankSum=-0.157;QD=5.76;ReadPosRankSum=2.636;SB=-6.050e+02 GT:AD:DP:GQ:PL 0/1:89,63:152:99:905,0,1649 chrXV 1065809 . A G 3192 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.59;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3225,354,0 chrXV 1065861 . C T 917.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.600;DP=193;Dels=0.00;FS=1.269;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=53.93;MQ0=0;MQRankSum=0.157;QD=4.75;ReadPosRankSum=-1.389;SB=-4.310e+02 GT:AD:DP:GQ:PL 0/1:109,84:193:99:947,0,1774 chrXV 1065886 . C T 1020.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.874;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=9.9229;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=0;MQRankSum=1.508;QD=5.70;ReadPosRankSum=0.775;SB=-4.060e+02 GT:AD:DP:GQ:PL 0/1:99,74:179:99:1050,0,1462 chrXV 1065927 . G T 628.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=140;Dels=0.00;FS=23.412;HaplotypeScore=290.5262;MLEAC=1;MLEAF=0.500;MQ=42.31;MQ0=0;MQRankSum=-4.404;QD=4.49;ReadPosRankSum=2.365;SB=-6.260e+02 GT:AD:DP:GQ:PL 0/1:68,69:140:99:658,0,1073 chrXV 1065928 . A G 567.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;DP=141;Dels=0.00;FS=28.389;HaplotypeScore=293.7173;MLEAC=1;MLEAF=0.500;MQ=42.23;MQ0=0;MQRankSum=-5.223;QD=4.02;ReadPosRankSum=3.134;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:76,65:141:99:597,0,1194 chrXV 1065973 . A T 639.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.324;DP=107;Dels=0.00;FS=95.292;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=36.33;MQ0=0;MQRankSum=-2.018;QD=5.97;ReadPosRankSum=1.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,39:107:99:669,0,543 chrXV 1065976 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=35.20;MQ0=0;QD=14.13;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1460,165,0 chrXV 1065987 . T C 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=104;Dels=0.00;FS=3.638;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;MQRankSum=-1.232;QD=11.15;ReadPosRankSum=1.566;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1193,116,0 chrXV 1065998 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=0;QD=12.25;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1319,144,0 chrXV 1066016 . T C 691.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DP=115;Dels=0.00;FS=69.383;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=35.20;MQ0=0;MQRankSum=0.915;QD=6.01;ReadPosRankSum=2.842;SB=-8.290e+02 GT:AD:DP:GQ:PL 0/1:39,76:115:99:721,0,521 chrXV 1066028 . T C 389.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=105;Dels=0.00;FS=55.796;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=34.24;MQ0=0;MQRankSum=-2.330;QD=3.70;ReadPosRankSum=-3.167;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,30:105:99:419,0,722 chrXV 1066043 . C T 323.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=6.227;DP=103;Dels=0.00;FS=53.350;HaplotypeScore=21.1760;MLEAC=1;MLEAF=0.500;MQ=33.22;MQ0=0;MQRankSum=-1.842;QD=3.14;ReadPosRankSum=-1.027;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,25:103:99:353,0,657 chrXV 1066080 . A G 405.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;DP=107;Dels=0.00;FS=51.524;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=37.40;MQ0=0;MQRankSum=-0.576;QD=3.79;ReadPosRankSum=1.275;SB=-6.940e+02 GT:AD:DP:GQ:PL 0/1:39,68:107:66:435,0,66 chrXV 1066092 . C T 420.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=113;Dels=0.00;FS=42.171;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.60;MQ0=0;MQRankSum=-2.392;QD=3.72;ReadPosRankSum=-0.588;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:41,72:113:99:450,0,179 chrXV 1066098 . A G 210.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;DP=118;Dels=0.00;FS=44.607;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.99;MQ0=0;MQRankSum=0.989;QD=1.78;ReadPosRankSum=1.334;SB=-1.007e+00 GT:AD:DP:GQ:PL 0/1:77,41:118:99:240,0,553 chrXV 1066106 . T G 1071 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=9.00;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1104,123,0 chrXV 1066180 . C A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DP=108;Dels=0.00;FS=33.086;HaplotypeScore=10.8065;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-5.216;QD=0.12;ReadPosRankSum=-1.801;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,21:108:43:43,0,1683 chrXV 1066448 . T C 1722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9364;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.365;QD=22.08;ReadPosRankSum=1.687;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:99:1755,192,0 chrXV 1066877 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.15;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,101:103:99:2211,243,0 chrXV 1066963 . G A 1993 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.90;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2026,222,0 chrXV 1067351 . G A 1070 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.11;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1103,117,0 chrXV 1067607 . T A 645 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.36;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:75:678,75,0 chrXV 1067609 . C T 630 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=14.65;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:72:663,72,0 chrXV 1067693 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.95;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1227,135,0 chrXV 1067871 . A G 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=86;Dels=0.00;FS=16.608;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.154;QD=22.98;ReadPosRankSum=3.312;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:4,82:86:99:2009,225,0 chrXV 1067969 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.88;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1520,171,0 chrXV 1068152 . C A 1829 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.27;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1862,204,0 chrXV 1068167 . A G 1550 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.13;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1583,177,0 chrXV 1068179 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.74;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1685,177,0 chrXV 1068242 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.70;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1530,171,0 chrXV 1068299 . A G 1233 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1266,141,0 chrXV 1068515 . A G 1141 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=1.263;QD=19.02;ReadPosRankSum=1.674;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1174,129,0 chrXV 1068527 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.59;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1307,138,0 chrXV 1068559 . A T 1579 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.05;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1612,174,0 chrXV 1068590 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.14;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1277,141,0 chrXV 1068722 . G A 953 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:986,111,0 chrXV 1069113 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=25.37;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2037,216,0 chrXV 1069372 . C T 1448 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.94;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1481,156,0 chrXV 1069379 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.16;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1374,144,0 chrXV 1069465 . G C 1817 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.30;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,101:105:99:1850,201,0 chrXV 1069479 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.05;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1995,219,0 chrXV 1069504 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=17.48;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2096,228,0 chrXV 1069590 . A T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=4.494;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.501;QD=17.61;ReadPosRankSum=1.687;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1424,165,0 chrXV 1069591 . T A 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.329;QD=17.28;ReadPosRankSum=1.513;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1398,165,0 chrXV 1069608 . C G 1176 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.97;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1209,132,0 chrXV 1069696 . C T 948 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.75;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:981,105,0 chrXV 1070370 . T A 1422 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.9428;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=18.71;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1455,159,0 chrXV 1070458 . A T 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.649;DP=64;Dels=0.00;FS=6.879;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=3;MQRankSum=2.241;QD=15.23;ReadPosRankSum=0.901;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:4,60:64:63:1008,63,0 chrXV 1070645 . C G 272.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;DP=49;Dels=0.00;FS=1.939;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=13;MQRankSum=0.851;QD=5.55;ReadPosRankSum=2.311;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:17,30:49:99:302,0,208 chrXV 1070650 . G C 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.82;MQ0=12;MQRankSum=0.102;QD=3.14;ReadPosRankSum=-1.972;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:28,15:44:99:168,0,275 chrXV 1070669 . C T 277 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=13.5791;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=12;QD=7.10;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:33:310,33,0 chrXV 1070689 . G T 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;DP=47;Dels=0.00;FS=11.429;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=37.76;MQ0=13;MQRankSum=-1.002;QD=0.41;ReadPosRankSum=-1.342;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,18:47:49:49,0,412 chrXV 1070807 . A G 943 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=52;Dels=0.00;FS=3.297;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=4;MQRankSum=0.111;QD=18.13;ReadPosRankSum=1.659;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:976,105,0 chrXV 1070855 . A G 366 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=2;QD=12.62;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:45:399,45,0 chrXV 1070870 . T G 200.01 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=4;MQRankSum=-1.734;QD=7.69;ReadPosRankSum=1.419;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:27:233,27,0 chrXV 1070871 . C T 183.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=5;QD=7.04;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:1,25:26:24:216,24,0 chrXV 1070872 . A T 187.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=5;QD=6.45;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:24:220,24,0 chrXV 1070895 . T A 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=61;Dels=0.00;FS=32.429;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=39.26;MQ0=9;MQRankSum=-2.106;QD=2.26;ReadPosRankSum=-2.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,13:61:99:168,0,637 chrXV 1070965 . G T 737.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;DP=77;Dels=0.00;FS=64.629;HaplotypeScore=2.1010;MLEAC=1;MLEAF=0.500;MQ=43.88;MQ0=9;MQRankSum=3.579;QD=9.57;ReadPosRankSum=-1.340;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:30,46:77:99:767,0,368 chrXV 1071091 . G A 808 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.24;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:841,93,0 chrXV 1071098 . A G 941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-1.568;QD=21.88;ReadPosRankSum=1.650;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,41:43:99:974,102,0 chrXV 1071160 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=20.13;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1080,117,0 chrXV 1071203 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=19.59;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1365,153,0 chrXV 1071268 . A T 1371 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=21.76;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1404,153,0 chrXV 1071284 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=23.07;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1325,147,0 chrXV 1071359 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=24.12;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1480,156,0 chrXV 1071405 . T C 788 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=23.88;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:821,90,0 chrXV 1071436 . T C 547 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=3;QD=19.54;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:3,25:28:66:580,66,0 chrXV 1071470 . T C 439.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;DP=49;Dels=0.00;FS=45.552;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=32.32;MQ0=3;MQRankSum=2.307;QD=8.96;ReadPosRankSum=0.236;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:21,28:49:99:469,0,290 chrXV 1071476 . T G 431.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DP=51;Dels=0.00;FS=52.416;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.05;MQ0=3;MQRankSum=2.806;QD=8.45;ReadPosRankSum=-0.333;SB=-5.300e+01 GT:AD:DP:GQ:PL 0/1:24,27:51:99:461,0,324 chrXV 1071487 . C T 449.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.155;DP=49;Dels=0.00;FS=52.162;HaplotypeScore=55.8072;MLEAC=1;MLEAF=0.500;MQ=30.00;MQ0=3;MQRankSum=-1.983;QD=9.16;ReadPosRankSum=0.565;SB=-1.032e+02 GT:AD:DP:GQ:PL 0/1:20,29:49:99:479,0,265 chrXV 1071518 . G A 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;DP=54;Dels=0.00;FS=72.307;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.14;MQ0=1;MQRankSum=3.114;QD=3.48;ReadPosRankSum=-3.836;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,22:54:99:218,0,602 chrXV 1071534 . C T 510.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.546;DP=67;Dels=0.00;FS=69.835;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=-2.328;QD=7.61;ReadPosRankSum=2.592;SB=-3.175e+01 GT:AD:DP:GQ:PL 0/1:35,32:67:99:540,0,343 chrXV 1071555 . G A 485.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;DP=67;Dels=0.00;FS=70.684;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.84;MQ0=1;MQRankSum=2.401;QD=7.24;ReadPosRankSum=0.211;SB=-3.275e+01 GT:AD:DP:GQ:PL 0/1:23,44:67:99:515,0,308 chrXV 1071567 . C T 866 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=1;QD=13.12;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:96:899,96,0 chrXV 1071583 . G A 874 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=1;QD=12.49;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:96:907,96,0 chrXV 1071604 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=1;QD=10.49;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:96:862,96,0 chrXV 1071618 . C A 910 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.027;DP=80;Dels=0.00;FS=73.263;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=2;MQRankSum=4.130;QD=11.37;ReadPosRankSum=0.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,65:80:99:943,102,0 chrXV 1071619 . A G 898 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=2;QD=11.51;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:931,102,0 chrXV 1071642 . C G 799 filter AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=4;QD=10.65;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,75:75:93:832,93,0 chrXV 1071669 . A G 674 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.168;DP=72;Dels=0.00;FS=47.390;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=10;MQRankSum=3.053;QD=9.36;ReadPosRankSum=-0.947;SB=-1.801e+01 GT:AD:DP:GQ:PL 1/1:17,55:72:37:707,37,0 chrXV 1071676 . C T 587.02 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.423;DP=71;Dels=0.03;FS=38.910;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=15;MQRankSum=2.468;QD=8.27;ReadPosRankSum=-1.058;SB=-1.803e+01 GT:AD:DP:GQ:PL 1/1:20,49:69:25:620,25,0 chrXV 1071883 . A G 617.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;DP=139;Dels=0.00;FS=17.107;HaplotypeScore=17.2415;MLEAC=1;MLEAF=0.500;MQ=19.94;MQ0=50;MQRankSum=-0.966;QD=4.44;ReadPosRankSum=0.303;SB=-2.860e+02 GT:AD:DP:GQ:PL 0/1:54,80:139:99:647,0,455 chrXV 1072045 . A G 451 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=58;QD=5.71;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,78:79:57:484,57,0 chrXV 1072171 . A C 350.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=136;Dels=0.00;FS=9.178;HaplotypeScore=8.1880;MLEAC=1;MLEAF=0.500;MQ=16.21;MQ0=73;MQRankSum=1.110;QD=2.57;ReadPosRankSum=-2.016;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:59,76:136:99:380,0,257 chrXV 1072492 . A G 1793.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.948;DP=190;Dels=0.00;FS=5.521;HaplotypeScore=8.6388;MLEAC=1;MLEAF=0.500;MQ=38.69;MQ0=2;MQRankSum=-0.126;QD=9.44;ReadPosRankSum=0.510;SB=-7.320e+02 GT:AD:DP:GQ:PL 0/1:91,99:190:99:1823,0,1638 chrXV 1072596 . G T 635.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=24.59;MQ0=43;MQRankSum=-1.179;QD=4.04;ReadPosRankSum=-0.403;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,76:157:99:665,0,1087 chrXV 1073023 . T C 1877 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5208;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=4;MQRankSum=1.689;QD=22.08;ReadPosRankSum=0.706;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1910,213,0 chrXV 1073311 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=1;QD=16.65;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1165,126,0 chrXV 1073312 . G A 1170 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=17.21;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1203,126,0 chrXV 1073665 . T C 1069 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.981;DP=52;Dels=0.00;FS=10.962;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=2.119;QD=20.56;ReadPosRankSum=2.708;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:99:1102,120,0 chrXV 1073695 . T G 1086 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.88;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1119,126,0 chrXV 1074123 . A G 467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=39;Dels=0.00;FS=2.181;HaplotypeScore=7.3919;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=-0.529;QD=11.97;ReadPosRankSum=2.341;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:4,32:39:57:500,57,0 chrXV 1074193 . T A 1007 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=10.8748;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.102;QD=17.98;ReadPosRankSum=1.669;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,54:56:99:1040,117,0 chrXV 1074803 . A G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.664;DP=132;Dels=0.00;FS=39.430;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=9;MQRankSum=-5.422;QD=0.30;ReadPosRankSum=2.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:108,24:132:69:69,0,2254 chrXV 1074881 . T C 317.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.648;DP=140;Dels=0.00;FS=28.706;HaplotypeScore=13.3529;MLEAC=1;MLEAF=0.500;MQ=29.61;MQ0=22;MQRankSum=-2.496;QD=2.26;ReadPosRankSum=1.472;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,46:140:99:347,0,1521 chrXV 1075223 . C T 299.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.180;DP=176;Dels=0.00;FS=44.641;HaplotypeScore=13.6122;MLEAC=1;MLEAF=0.500;MQ=49.15;MQ0=1;MQRankSum=-6.790;QD=1.70;ReadPosRankSum=0.049;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:116,56:176:99:329,0,2170 chrXV 1075226 . C T 282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.697;DP=175;Dels=0.00;FS=52.932;HaplotypeScore=11.2462;MLEAC=1;MLEAF=0.500;MQ=48.87;MQ0=2;MQRankSum=-6.379;QD=1.61;ReadPosRankSum=-0.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,59:175:99:312,0,2288 chrXV 1075230 . C T 267.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.563;DP=179;Dels=0.00;FS=32.756;HaplotypeScore=11.6199;MLEAC=1;MLEAF=0.500;MQ=48.64;MQ0=2;MQRankSum=-6.929;QD=1.49;ReadPosRankSum=-0.086;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:118,58:179:99:297,0,2271 chrXV 1075231 . A G 233.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;DP=175;Dels=0.00;FS=30.765;HaplotypeScore=9.2539;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=2;MQRankSum=-7.103;QD=1.33;ReadPosRankSum=-0.248;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:118,57:175:99:263,0,2382 chrXV 1075245 . A G 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;DP=168;Dels=0.00;FS=18.892;HaplotypeScore=6.6227;MLEAC=1;MLEAF=0.500;MQ=46.54;MQ0=4;MQRankSum=-7.720;QD=0.21;ReadPosRankSum=-0.763;SB=-1.100e+02 GT:AD:DP:GQ:PL 0/1:115,52:168:66:66,0,2140 chrXV 1075310 . C T 804.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;DP=192;Dels=0.00;FS=2.670;HaplotypeScore=13.3963;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=6;MQRankSum=-0.996;QD=4.19;ReadPosRankSum=0.383;SB=-4.650e+02 GT:AD:DP:GQ:PL 0/1:119,73:192:99:834,0,2045 chrXV 1075521 . A G 787.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=168;Dels=0.00;FS=12.088;HaplotypeScore=13.7581;MLEAC=1;MLEAF=0.500;MQ=49.38;MQ0=1;MQRankSum=-5.799;QD=4.68;ReadPosRankSum=-1.329;SB=-1.920e+02 GT:AD:DP:GQ:PL 0/1:107,60:168:99:817,0,2064 chrXV 1075556 . A C 1296.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259;DP=188;Dels=0.00;FS=0.549;HaplotypeScore=11.8624;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=0;MQRankSum=-6.164;QD=6.89;ReadPosRankSum=2.030;SB=-7.040e+02 GT:AD:DP:GQ:PL 0/1:113,75:188:99:1326,0,2075 chrXV 1075901 . A G 224.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.983;DP=120;Dels=0.00;FS=58.577;HaplotypeScore=7.4571;MLEAC=1;MLEAF=0.500;MQ=41.93;MQ0=2;MQRankSum=-1.524;QD=1.87;ReadPosRankSum=-0.668;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,28:120:99:254,0,1625 chrXV 1075946 . A G 396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.411;DP=118;Dels=0.00;FS=70.405;HaplotypeScore=4.5163;MLEAC=1;MLEAF=0.500;MQ=33.17;MQ0=23;MQRankSum=-0.305;QD=3.36;ReadPosRankSum=0.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,49:118:99:426,0,1086 chrXV 1076035 . G A 348.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.408;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=18;MQRankSum=-1.407;QD=3.28;ReadPosRankSum=0.409;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:61,45:106:99:378,0,710 chrXV 1076053 . A G 368.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890;DP=101;Dels=0.00;FS=2.890;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=39.37;MQ0=11;MQRankSum=-3.493;QD=3.64;ReadPosRankSum=2.044;SB=-2.210e+02 GT:AD:DP:GQ:PL 0/1:61,40:101:99:398,0,953 chrXV 1076060 . T G 423.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;DP=112;Dels=0.00;FS=1.652;HaplotypeScore=7.2505;MLEAC=1;MLEAF=0.500;MQ=41.65;MQ0=10;MQRankSum=-4.492;QD=3.78;ReadPosRankSum=1.537;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:66,45:112:99:453,0,1017 chrXV 1076104 . G A 309.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.022;DP=114;Dels=0.00;FS=26.001;HaplotypeScore=4.5579;MLEAC=1;MLEAF=0.500;MQ=47.64;MQ0=0;MQRankSum=-6.985;QD=2.71;ReadPosRankSum=-1.422;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:74,39:114:99:339,0,1345 chrXV 1076112 . G A 188.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DP=114;Dels=0.00;FS=30.539;HaplotypeScore=6.0997;MLEAC=1;MLEAF=0.500;MQ=48.50;MQ0=0;MQRankSum=-7.151;QD=1.65;ReadPosRankSum=-0.468;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:80,34:114:99:218,0,1429 chrXV 1076141 . T G 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;DP=118;Dels=0.00;FS=69.751;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=47.73;MQ0=0;MQRankSum=-7.798;QD=1.17;ReadPosRankSum=-0.499;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:82,36:118:99:168,0,1432 chrXV 1076146 . T C 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=115;Dels=0.00;FS=62.036;HaplotypeScore=32.9961;MLEAC=1;MLEAF=0.500;MQ=48.19;MQ0=0;MQRankSum=-7.810;QD=0.88;ReadPosRankSum=0.848;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,32:115:99:131,0,1435 chrXV 1076387 . C T 1079.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;DP=147;Dels=0.00;FS=7.375;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=45.84;MQ0=8;MQRankSum=-0.423;QD=7.34;ReadPosRankSum=0.579;SB=-1.610e+02 GT:AD:DP:GQ:PL 0/1:73,74:147:99:1109,0,1304 chrXV 1076396 . G A 1180.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.721;DP=153;Dels=0.00;FS=5.540;HaplotypeScore=6.6261;MLEAC=1;MLEAF=0.500;MQ=46.63;MQ0=6;MQRankSum=-1.460;QD=7.71;ReadPosRankSum=0.333;SB=-1.910e+02 GT:AD:DP:GQ:PL 0/1:78,74:153:99:1210,0,1434 chrXV 1076426 . G T 2447 filter AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=9;QD=19.27;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2480,264,0 chrXV 1076454 . A G 472.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.856;DP=135;Dels=0.00;FS=1.449;HaplotypeScore=10.3398;MLEAC=1;MLEAF=0.500;MQ=46.07;MQ0=7;MQRankSum=-6.307;QD=3.50;ReadPosRankSum=-0.172;SB=-3.380e+02 GT:AD:DP:GQ:PL 0/1:80,54:135:99:502,0,1522 chrXV 1076471 . G A 493.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DP=127;Dels=0.00;FS=10.488;HaplotypeScore=9.8894;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=4;MQRankSum=-6.631;QD=3.88;ReadPosRankSum=-0.083;SB=-1.570e+02 GT:AD:DP:GQ:PL 0/1:77,49:127:99:523,0,1331 chrXV 1077090 . A G 812 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=47;MQRankSum=-0.421;QD=6.71;ReadPosRankSum=1.592;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:2,119:121:96:845,96,0 chrXV 1077350 . A G 521 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.49;MQ0=38;QD=8.27;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:63:554,63,0 chrXV 1077431 . T C 70.51 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.77;MQ0=29;QD=1.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:40:12:103,12,0 chrXV 1077587 . G A 438 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=17;QD=11.84;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:51:471,51,0 chrXV 1077923 . T C 78.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.079;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=8;MQRankSum=-1.449;QD=2.80;ReadPosRankSum=2.205;SB=-5.375e+01 GT:AD:DP:GQ:PL 1/1:2,26:28:12:111,12,0 chrXV 1077928 . T C 107.26 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.30;MQ0=7;QD=4.66;SB=-5.476e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:15:140,15,0 chrXV 1078011 . A G 427 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=1;QD=17.79;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:460,51,0 chrXV 1078060 . T A 244.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=12;MQRankSum=1.300;QD=4.60;ReadPosRankSum=-0.355;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:31,22:53:99:274,0,477 chrXV 1078080 . A G 933 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=14;MQRankSum=0.542;QD=15.05;ReadPosRankSum=2.348;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:2,60:62:99:966,108,0 chrXV 1078236 . A G 37.05 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=10.0023;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=3;MQRankSum=0.978;QD=2.65;ReadPosRankSum=-0.382;SB=0.120 GT:AD:DP:GQ:PL 0/1:4,10:14:17:67,0,17 chrXV 1078278 . G A 80.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=3;MQRankSum=0.742;QD=8.05;ReadPosRankSum=0.742;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:2,8:10:12:113,12,0 chrXV 1079148 . T A 58.97 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.55;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,9:9:9:91,9,0 chrXV 1079160 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.72;SB=-1.740e+00 GT:AD:DP:GQ:PL 1/1:0,8:8:6:53,6,0 chrXV 1079205 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=1;QD=2.97;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:52,6,0 chrXV 1079471 . G A 167.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=2;QD=15.19;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:200,21,0 chrXV 1079479 . G A 165.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=2;QD=15.01;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:21:198,21,0 chrXV 1079504 . C T 218.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=16.77;SB=-5.002e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:251,27,0 chrXV 1079580 . C T 72.51 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=15;QD=3.63;SB=-2.355e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:12:105,12,0 chrXV 1079581 . C G 68.51 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=15;QD=3.43;SB=-2.355e+01 GT:AD:DP:GQ:PL 1/1:0,19:20:12:101,12,0 chrXV 1079620 . C T 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.52;MQ0=25;QD=0.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:6:48,6,0 chrXV 1079652 . T C 86.26 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.94;MQ0=43;QD=1.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,23:52:15:119,15,0 chrXV 1079816 . G T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=5.55;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:59,6,0 chrXV 1079855 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrXV 1079856 . A G 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:53,6,0 chrXV 1083260 . A G 123.13 filter AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.05;MQ0=120;QD=0.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,134:136:18:156,18,0 chrXV 1083302 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.41;MQ0=78;QD=0.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,85:87:6:53,6,0 chrXV 1083499 . G A 266.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.632;DP=50;Dels=0.00;FS=1.194;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=7;MQRankSum=1.300;QD=5.32;ReadPosRankSum=-0.595;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:24,26:50:99:296,0,152 chrXVI 6821 . G A 195 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=0;QD=19.50;SB=-7.595e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:228,30,0 chrXVI 6824 . T C 199 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=0;QD=19.90;SB=-8.095e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:232,30,0 chrXVI 6825 . C T 205 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=0;QD=20.50;SB=-8.595e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:238,30,0 chrXVI 6830 . C T 204 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=0;QD=20.40;SB=-8.495e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:30:237,30,0 chrXVI 6851 . C T 247 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=0;QD=20.58;SB=-8.499e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:280,36,0 chrXVI 6879 . T C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXVI 6880 . C T 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXVI 6888 . G C 12.04 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:43,6,0 chrXVI 6903 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=2;QD=3.01;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:43,6,0 chrXVI 7122 . T C 32.97 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.68;MQ0=31;QD=0.92;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:27,8:36:9:65,9,0 chrXVI 7142 . T C 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.25;MQ0=25;QD=1.60;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:16,17:33:12:87,12,0 chrXVI 7148 . A T 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.64;MQ0=22;QD=1.76;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:21,10:31:12:87,12,0 chrXVI 7151 . C A 54.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.79;MQ0=21;QD=1.82;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:5,9:30:12:87,12,0 chrXVI 7164 . T C 54.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.79;MQ0=21;QD=1.82;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:3,27:30:12:87,12,0 chrXVI 7165 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.79;MQ0=21;QD=1.82;SB=-4.882e-01 GT:AD:DP:GQ:PL 1/1:18,12:30:12:87,12,0 chrXVI 7190 . T C 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.66;MQ0=20;QD=1.22;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:20,7:27:9:65,9,0 chrXVI 7191 . C G 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.66;MQ0=20;QD=1.22;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:20,7:27:9:65,9,0 chrXVI 7192 . C T 32.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.82;MQ0=19;QD=1.27;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:0,26:26:9:65,9,0 chrXVI 7202 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.35;MQ0=22;QD=0.42;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:22,7:29:6:43,6,0 chrXVI 9175 . A G 59.51 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.43;MQ0=16;QD=2.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:21:12:92,12,0 chrXVI 11402 . G C 45.97 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.68;MQ0=11;QD=2.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:9:78,9,0 chrXVI 11625 . C T 135.13 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=9;QD=7.51;SB=-1.029e+02 GT:AD:DP:GQ:PL 1/1:7,11:18:18:168,18,0 chrXVI 11629 . A G 156.06 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=10;QD=7.80;SB=-1.028e+02 GT:AD:DP:GQ:PL 1/1:6,14:20:21:189,21,0 chrXVI 11653 . G A 295 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=12;QD=9.52;SB=-1.870e+02 GT:AD:DP:GQ:PL 1/1:7,21:30:36:328,36,0 chrXVI 11742 . C T 116.13 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=12.32;MQ0=44;QD=2.15;SB=-2.788e+01 GT:AD:DP:GQ:PL 1/1:14,39:54:18:149,18,0 chrXVI 12707 . T C 134.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.39;MQ0=20;MQRankSum=2.914;QD=3.53;ReadPosRankSum=1.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,14:38:99:164,0,169 chrXVI 12711 . T C 159.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=24;MQRankSum=3.002;QD=3.79;ReadPosRankSum=1.325;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,16:42:99:189,0,103 chrXVI 12717 . T C 165.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=26;MQRankSum=2.914;QD=3.75;ReadPosRankSum=0.883;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,18:44:99:195,0,168 chrXVI 12748 . A G 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=13.21;MQ0=46;MQRankSum=2.776;QD=1.93;ReadPosRankSum=0.665;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,32:75:99:175,0,277 chrXVI 12866 . C T 60.18 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=5;MQRankSum=-0.736;QD=5.47;ReadPosRankSum=0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:3,8:11:11:90,0,11 chrXVI 12908 . T C 14.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=4;MQRankSum=0.406;QD=1.42;ReadPosRankSum=0.406;SB=-4.963e-02 GT:AD:DP:GQ:PL 0/1:5,5:10:17:44,0,17 chrXVI 13064 . T C 653 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=8;MQRankSum=-0.306;QD=15.55;ReadPosRankSum=1.631;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:1,41:42:75:686,75,0 chrXVI 13084 . A T 216.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=53;Dels=0.00;FS=8.598;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=11;MQRankSum=-0.401;QD=4.08;ReadPosRankSum=0.997;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,18:53:99:246,0,557 chrXVI 13130 . C G 894 filter AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=5;QD=16.56;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:927,108,0 chrXVI 13133 . T C 927 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=5;MQRankSum=-1.216;QD=17.83;ReadPosRankSum=1.659;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:960,108,0 chrXVI 13200 . G A 502 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=7;QD=12.87;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:63:535,63,0 chrXVI 13207 . A G 389 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=14;QD=8.84;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:48:422,48,0 chrXVI 13243 . A G 146.06 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=14;QD=4.87;SB=-2.806e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:21:179,21,0 chrXVI 13552 . C T 212.01 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=27;QD=4.61;SB=-2.702e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:27:245,27,0 chrXVI 13728 . C T 338 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.56;MQ0=33;QD=5.37;SB=-7.063e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:42:371,42,0 chrXVI 13789 . T C 290 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.68;MQ0=36;QD=5.27;SB=-8.632e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:36:323,36,0 chrXVI 14448 . T A 32.97 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=13.04;MQ0=19;QD=1.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,28:28:9:65,9,0 chrXVI 14550 . C T 2866 filter AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=7;QD=24.29;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2899,315,0 chrXVI 14612 . G T 216.01 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.49;MQ0=5;QD=15.43;SB=-2.699e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:249,27,0 chrXVI 14667 . G T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=5;QD=2.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrXVI 14669 . C T 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=5;QD=2.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:6:52,6,0 chrXVI 14703 . A T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=6;QD=2.86;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:6:57,6,0 chrXVI 14741 . G A 130.13 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.17;MQ0=3;QD=13.01;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:163,18,0 chrXVI 15018 . C T 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=1;QD=1.38;SB=-1.757e+00 GT:AD:DP:GQ:PL 1/1:0,18:18:6:56,6,0 chrXVI 15080 . A C 63.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=10;MQRankSum=0.315;QD=1.97;ReadPosRankSum=1.261;SB=-2.636e+00 GT:AD:DP:GQ:PL 0/1:3,29:32:12:93,0,12 chrXVI 15087 . T C 63.14 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.50;MQ0=11;MQRankSum=-0.709;QD=1.86;ReadPosRankSum=1.800;SB=-2.864e+01 GT:AD:DP:GQ:PL 0/1:4,30:34:12:93,0,12 chrXVI 15105 . C T 117.52 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.75;MQ0=17;MQRankSum=0.456;QD=3.26;ReadPosRankSum=0.091;SB=-3.056e+01 GT:AD:DP:GQ:PL 0/1:10,26:36:6:147,0,6 chrXVI 15194 . T C 220 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=21;QD=6.47;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:10,24:34:30:253,30,0 chrXVI 15418 . C G 1576 filter AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=6;QD=19.22;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1609,189,0 chrXVI 15522 . T G 256 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=1;QD=11.64;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:33:289,33,0 chrXVI 15669 . C A 578 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=17.52;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:66:611,66,0 chrXVI 15762 . C A 101.26 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=5;QD=4.82;SB=-2.707e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:15:134,15,0 chrXVI 15768 . G A 48.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=3;QD=3.50;SB=-9.645e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:81,9,0 chrXVI 16197 . A G 191.01 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=25;QD=4.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,39:39:27:224,27,0 chrXVI 16500 . A G 1575 filter AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=15;QD=18.10;SB=-8.001e+01 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1608,192,0 chrXVI 16608 . T A 1457 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=83;Dels=0.00;FS=4.505;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=4;MQRankSum=0.943;QD=17.55;ReadPosRankSum=1.601;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1490,162,0 chrXVI 16847 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=17.18;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1373,162,0 chrXVI 16980 . T A 801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=10.0858;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;MQRankSum=-0.072;QD=16.69;ReadPosRankSum=1.660;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:90:834,90,0 chrXVI 17068 . G A 561 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.10;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:594,69,0 chrXVI 17345 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=13.78;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:901,99,0 chrXVI 17370 . T C 831 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.89;MQ0=0;QD=14.84;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:864,96,0 chrXVI 17384 . T C 955 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=16.75;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:988,108,0 chrXVI 17412 . A T 847 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=15.12;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:880,96,0 chrXVI 17474 . A G 909 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=53;Dels=0.00;FS=3.017;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=1.284;QD=17.15;ReadPosRankSum=2.357;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:2,51:53:88:942,88,0 chrXVI 17536 . T C 1454 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.000;QD=20.77;ReadPosRankSum=1.683;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1487,165,0 chrXVI 17634 . T G 750 filter AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=4;QD=10.87;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:87:783,87,0 chrXVI 17669 . A C 43.97 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=18.3748;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=3;QD=1.10;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,40:40:9:76,9,0 chrXVI 17787 . C T 811 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.9236;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=3;MQRankSum=-0.645;QD=14.75;ReadPosRankSum=-0.781;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:73:844,73,0 chrXVI 17820 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=3;QD=18.27;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1330,153,0 chrXVI 17895 . T C 1783 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=83.6216;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=3;QD=19.59;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1816,210,0 chrXVI 17926 . G A 1102 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=4;QD=18.07;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1135,126,0 chrXVI 17980 . T C 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=2;QD=2.07;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,11:11:6:54,6,0 chrXVI 19227 . A G 164.06 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.76;MQ0=10;QD=8.63;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:6,13:19:21:197,21,0 chrXVI 19230 . G C 149.06 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=7;QD=9.32;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:21:182,21,0 chrXVI 19252 . T G 154.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=1;QD=14.01;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:21:187,21,0 chrXVI 19253 . T C 153.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=1;QD=13.91;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:11:21:186,21,0 chrXVI 19268 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;QD=8.99;SB=-7.155e-01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:77,9,0 chrXVI 19289 . C T 51.97 PASS AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.99;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:0,4:4:9:84,9,0 chrXVI 19305 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.59;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:57,6,0 chrXVI 19385 . G A 228 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=3;QD=12.00;SB=-8.198e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:30:261,30,0 chrXVI 19482 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=17.48;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1099,120,0 chrXVI 19545 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=22.40;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1041,117,0 chrXVI 19582 . C T 310 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=36.77;MQ0=0;QD=10.00;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,29:31:39:343,39,0 chrXVI 19596 . A G 249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=10.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.27;MQ0=0;MQRankSum=-0.946;QD=11.32;ReadPosRankSum=1.576;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,21:22:33:282,33,0 chrXVI 19604 . G C 167.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=8.79;SB=-4.094e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:200,24,0 chrXVI 19639 . G A 105.26 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.26;SB=-2.627e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:15:138,15,0 chrXVI 19655 . G C 71.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.21;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:104,12,0 chrXVI 19657 . C T 86.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=5.09;SB=-3.252e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:119,12,0 chrXVI 19659 . G A 79.51 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=4.68;SB=-2.952e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:112,12,0 chrXVI 19695 . C T 77.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=4.56;SB=-5.452e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:110,12,0 chrXVI 19696 . C T 76.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=4.50;SB=-5.352e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:12:109,12,0 chrXVI 19706 . G A 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=1.43;SB=-5.577e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:6:57,6,0 chrXVI 19727 . C T 325 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=11.61;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:39:358,39,0 chrXVI 19738 . A G 368 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=12.69;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:45:401,45,0 chrXVI 19740 . A G 419 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=13.52;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,30:31:51:452,51,0 chrXVI 19792 . A G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;MQRankSum=1.675;QD=21.51;ReadPosRankSum=1.675;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1345,150,0 chrXVI 19818 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=22.69;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1644,177,0 chrXVI 19898 . C T 1052 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2682;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=-1.354;QD=18.79;ReadPosRankSum=1.669;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1085,120,0 chrXVI 19918 . T C 870 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=18.51;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:903,105,0 chrXVI 19964 . T C 628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=3.493;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;MQRankSum=-1.094;QD=16.53;ReadPosRankSum=1.641;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:75:661,75,0 chrXVI 20018 . C G 443 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;QD=14.77;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,29:30:54:476,54,0 chrXVI 20036 . G T 530 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=15.59;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,32:34:63:563,63,0 chrXVI 20054 . T G 559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=3.802;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;MQRankSum=-1.251;QD=15.53;ReadPosRankSum=1.636;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:69:592,69,0 chrXVI 20075 . T G 657 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=15.64;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:81:690,81,0 chrXVI 20093 . G C 673 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=14.96;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:81:706,81,0 chrXVI 20127 . T A 825 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=15.87;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:858,93,0 chrXVI 20134 . C T 746 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=14.63;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:84:779,84,0 chrXVI 20140 . G A 698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;MQRankSum=0.034;QD=13.69;ReadPosRankSum=-0.238;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:78:731,78,0 chrXVI 20186 . G A 136.13 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=4.54;SB=-8.514e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:18:169,18,0 chrXVI 20220 . A G 450 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;QD=15.52;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:483,54,0 chrXVI 20272 . C T 619 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=17.19;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:652,75,0 chrXVI 20283 . C T 526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=0.060;QD=18.14;ReadPosRankSum=1.494;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:63:559,63,0 chrXVI 20295 . A G 406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;MQRankSum=0.867;QD=16.24;ReadPosRankSum=1.589;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:1,23:25:51:439,51,0 chrXVI 20347 . T C 719 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=22.47;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:752,87,0 chrXVI 20374 . G A 858 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=19.95;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:891,99,0 chrXVI 20495 . G C 642 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=19.45;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:675,78,0 chrXVI 20538 . A G 442 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=17.00;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:57:475,57,0 chrXVI 20546 . A G 378 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=15.75;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:48:411,48,0 chrXVI 20554 . G A 310 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=13.48;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:39:343,39,0 chrXVI 20565 . G C 266 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=11.08;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:36:299,36,0 chrXVI 20591 . G T 265 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=12.62;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:33:298,33,0 chrXVI 20613 . C T 474 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=14.36;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:507,57,0 chrXVI 20631 . C T 765 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=16.28;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:798,90,0 chrXVI 20666 . G C 868 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=15.50;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:901,102,0 chrXVI 20668 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=15.80;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:965,105,0 chrXVI 20681 . T C 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;MQRankSum=0.812;QD=16.32;ReadPosRankSum=1.678;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:1,63:65:99:1094,126,0 chrXVI 20704 . C T 101.26 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=41.5366;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=1.78;SB=-6.833e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:15:134,15,0 chrXVI 20793 . G T 1752 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=21.63;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1785,195,0 chrXVI 20832 . A G 726 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=14.52;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:87:759,87,0 chrXVI 20853 . C T 630 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=36.74;MQ0=0;QD=12.35;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:72:663,72,0 chrXVI 20867 . T C 313 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.69;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:42:346,42,0 chrXVI 20903 . T A 213 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=0;QD=6.09;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:30:246,30,0 chrXVI 20916 . T C 314 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.85;MQ0=0;QD=8.97;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:347,42,0 chrXVI 20924 . T C 347 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=10.52;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:45:380,45,0 chrXVI 20927 . C T 367 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=10.79;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:45:400,45,0 chrXVI 20964 . G A 740 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=14.51;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:51:84:773,84,0 chrXVI 21048 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=16.26;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1106,120,0 chrXVI 21082 . G C 686 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=13.19;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:719,84,0 chrXVI 21094 . T C 703 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=13.52;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:736,84,0 chrXVI 21096 . A G 702 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;MQRankSum=-1.599;QD=13.50;ReadPosRankSum=1.599;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:84:735,84,0 chrXVI 21102 . G A 718 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=11.77;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:81:751,81,0 chrXVI 21112 . T C 718 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.81;MQ0=0;QD=11.22;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:84:751,84,0 chrXVI 21161 . G A 902 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=13.67;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:935,108,0 chrXVI 21163 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=13.27;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:922,108,0 chrXVI 21172 . T A 811 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.41;MQ0=0;QD=12.48;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:844,99,0 chrXVI 21201 . A G 1144 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=17.33;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1177,138,0 chrXVI 21273 . T G 1984 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;MQRankSum=-1.647;QD=21.57;ReadPosRankSum=2.396;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:2017,228,0 chrXVI 21314 . C A 2444 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=23.50;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2477,270,0 chrXVI 21346 . G A 2104 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=22.62;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2137,231,0 chrXVI 21363 . A T 1792 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=21.59;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1825,201,0 chrXVI 21404 . T C 1550 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=20.95;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1583,180,0 chrXVI 21507 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=20.59;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1536,162,0 chrXVI 21518 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=19.22;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1628,180,0 chrXVI 21542 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=19.37;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1738,195,0 chrXVI 21603 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=17.92;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1664,183,0 chrXVI 21607 . T C 1546 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=18.19;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1579,177,0 chrXVI 21630 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=16.31;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1599,180,0 chrXVI 21642 . T A 1741 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=16.42;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1774,201,0 chrXVI 21690 . A C 1395 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=-1.509;QD=15.00;ReadPosRankSum=1.695;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1428,165,0 chrXVI 21691 . G A 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=14.54;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1371,150,0 chrXVI 21700 . C G 1338 SnpCluster AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=15.93;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1371,153,0 chrXVI 21806 . G T 930 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.31;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:963,111,0 chrXVI 21810 . C T 890 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=14.83;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:923,102,0 chrXVI 21824 . G C 910 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=14.92;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:943,108,0 chrXVI 21870 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.06;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1329,150,0 chrXVI 21970 . C A 760 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.5953;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.10;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:87:793,87,0 chrXVI 21980 . C T 752 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=18.80;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:785,87,0 chrXVI 22192 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=11.3210;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=22.85;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1724,192,0 chrXVI 22304 . T A 1520 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.683;QD=21.71;ReadPosRankSum=1.683;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1553,168,0 chrXVI 22333 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=17.94;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1325,153,0 chrXVI 22373 . A T 1055 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=15.07;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1088,117,0 chrXVI 22388 . C T 1089 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=14.72;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1122,123,0 chrXVI 22524 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.447;QD=20.24;ReadPosRankSum=1.691;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1753,204,0 chrXVI 22543 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.53;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1812,195,0 chrXVI 22544 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.32;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1696,192,0 chrXVI 22571 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.2303;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=16.58;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1558,180,0 chrXVI 22695 . T A 1154 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=14.61;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1187,135,0 chrXVI 22824 . G A 1333 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.90;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1366,147,0 chrXVI 22826 . A T 1290 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.25;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1323,144,0 chrXVI 22892 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.72;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1486,165,0 chrXVI 23027 . T G 1140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.496;DP=148;Dels=0.00;FS=30.185;HaplotypeScore=11.7755;MLEAC=1;MLEAF=0.500;MQ=54.04;MQ0=0;MQRankSum=4.629;QD=7.70;ReadPosRankSum=-0.702;SB=-5.090e+02 GT:AD:DP:GQ:PL 0/1:71,77:148:99:1170,0,1163 chrXVI 23156 . T C 978.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;DP=110;Dels=0.00;FS=11.220;HaplotypeScore=12.0258;MLEAC=1;MLEAF=0.500;MQ=54.92;MQ0=0;MQRankSum=1.606;QD=8.89;ReadPosRankSum=1.588;SB=-5.850e+02 GT:AD:DP:GQ:PL 0/1:48,62:110:99:1008,0,669 chrXVI 23219 . A T 2387 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.50;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2420,267,0 chrXVI 23234 . A G 2525 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=141;Dels=0.00;FS=6.836;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=1.256;QD=17.91;ReadPosRankSum=2.379;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:2,138:141:99:2558,294,0 chrXVI 23426 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.57;SB=-1.459e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2734,306,0 chrXVI 23456 . A G 2406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.2706;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.248;QD=17.56;ReadPosRankSum=1.707;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:1,135:137:99:2439,279,0 chrXVI 23495 . G T 2541 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.11;SB=-1.695e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2574,279,0 chrXVI 23600 . T C 3226.07 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=180;Dels=0.00;FS=2.968;HaplotypeScore=16.5481;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.815;QD=17.92;ReadPosRankSum=2.422;SB=-1.912e+03 GT:AD:DP:GQ:PL 1/1:2,176:180:99:3259,372,0 chrXVI 23750 . C T 3524.01 PASS AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=18.5717;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.37;SB=-1.619e+03 GT:AD:DP:GQ:PL 1/1:0,172:173:99:3524,384,0 chrXVI 23790 . C T 1203.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.088;DP=149;Dels=0.00;FS=3.951;HaplotypeScore=9.5656;MLEAC=1;MLEAF=0.500;MQ=53.47;MQ0=0;MQRankSum=3.818;QD=8.07;ReadPosRankSum=-2.594;SB=-6.560e+02 GT:AD:DP:GQ:PL 0/1:74,74:149:99:1233,0,1337 chrXVI 23831 . A T 4187.01 PASS AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=12.3169;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.39;SB=-1.507e+03 GT:AD:DP:GQ:PL 1/1:0,179:179:99:4187,456,0 chrXVI 23906 . A G 4403.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=9.1163;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.92;SB=-2.084e+03 GT:AD:DP:GQ:PL 1/1:0,219:221:99:4403,510,0 chrXVI 23951 . T C 3622.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=222;Dels=0.00;FS=10.864;HaplotypeScore=5.7606;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.597;QD=16.32;ReadPosRankSum=2.941;SB=-2.467e+03 GT:AD:DP:GQ:PL 1/1:3,219:222:99:3622,411,0 chrXVI 23952 . G A 3720.01 PASS AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=6.5493;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.83;SB=-2.539e+03 GT:AD:DP:GQ:PL 1/1:0,220:221:99:3720,405,0 chrXVI 24044 . G A 3945.01 SnpCluster AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=16.58;SB=-2.684e+03 GT:AD:DP:GQ:PL 1/1:0,238:238:99:3945,435,0 chrXVI 24047 . T C 3598.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=3.383;DP=247;Dels=0.00;FS=4.962;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=41.24;MQ0=0;MQRankSum=-1.238;QD=14.57;ReadPosRankSum=3.291;SB=-2.538e+03 GT:AD:DP:GQ:PL 1/1:4,243:247:99:3598,423,0 chrXVI 24050 . G A 3555.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=248;Dels=0.00;FS=3.522;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;MQRankSum=-0.649;QD=14.33;ReadPosRankSum=1.718;SB=-2.557e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:3555,402,0 chrXVI 24053 . A T 3639.01 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=248;Dels=0.00;FS=0.000;HaplotypeScore=5.9412;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;MQRankSum=-0.196;QD=14.67;ReadPosRankSum=1.648;SB=-2.956e+03 GT:AD:DP:GQ:PL 1/1:1,247:248:99:3639,402,0 chrXVI 24087 . C A 3372.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=222;Dels=0.00;FS=3.133;HaplotypeScore=12.3694;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;MQRankSum=-0.722;QD=15.19;ReadPosRankSum=-0.064;SB=-2.665e+03 GT:AD:DP:GQ:PL 1/1:1,219:222:99:3372,369,0 chrXVI 24125 . G A 4232.01 PASS AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.96;SB=-2.322e+03 GT:AD:DP:GQ:PL 1/1:0,208:212:99:4232,459,0 chrXVI 24149 . G A 1596.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.228;DP=222;Dels=0.00;FS=7.580;HaplotypeScore=12.7019;MLEAC=1;MLEAF=0.500;MQ=54.03;MQ0=0;MQRankSum=-1.898;QD=7.19;ReadPosRankSum=0.573;SB=-8.170e+02 GT:AD:DP:GQ:PL 0/1:115,105:222:99:1626,0,1909 chrXVI 24159 . T C 1516.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.967;DP=219;Dels=0.00;FS=11.157;HaplotypeScore=15.8364;MLEAC=1;MLEAF=0.500;MQ=54.17;MQ0=0;MQRankSum=-4.585;QD=6.92;ReadPosRankSum=0.594;SB=-7.550e+02 GT:AD:DP:GQ:PL 0/1:113,106:219:99:1546,0,1972 chrXVI 24212 . C T 1216.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.534;DP=181;Dels=0.00;FS=14.650;HaplotypeScore=4.3523;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-0.651;QD=6.72;ReadPosRankSum=-0.156;SB=-6.540e+02 GT:AD:DP:GQ:PL 0/1:101,80:181:99:1246,0,1697 chrXVI 24321 . T C 1573.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.309;DP=197;Dels=0.00;FS=1.755;HaplotypeScore=9.1017;MLEAC=1;MLEAF=0.500;MQ=55.39;MQ0=0;MQRankSum=1.317;QD=7.98;ReadPosRankSum=0.912;SB=-8.580e+02 GT:AD:DP:GQ:PL 0/1:97,99:197:99:1603,0,1737 chrXVI 24422 . G A 1420.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;DP=165;Dels=0.00;FS=3.941;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=0;MQRankSum=2.078;QD=8.61;ReadPosRankSum=1.746;SB=-6.070e+02 GT:AD:DP:GQ:PL 0/1:71,94:165:99:1450,0,1071 chrXVI 24446 . C A 1341.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;DP=139;Dels=0.00;FS=2.426;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=53.27;MQ0=0;MQRankSum=-0.234;QD=9.65;ReadPosRankSum=-0.308;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:58,80:139:99:1371,0,806 chrXVI 24524 . T C 982.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.715;DP=152;Dels=0.00;FS=1.315;HaplotypeScore=9.2591;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=0;MQRankSum=-2.933;QD=6.46;ReadPosRankSum=1.523;SB=-4.820e+02 GT:AD:DP:GQ:PL 0/1:82,68:152:99:1012,0,1457 chrXVI 24530 . T C 973.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;DP=161;Dels=0.00;FS=4.834;HaplotypeScore=17.9346;MLEAC=1;MLEAF=0.500;MQ=48.96;MQ0=0;MQRankSum=-3.379;QD=6.04;ReadPosRankSum=2.007;SB=-4.520e+02 GT:AD:DP:GQ:PL 0/1:90,71:161:99:1003,0,1267 chrXVI 24539 . T C 987.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.729;DP=159;Dels=0.00;FS=5.869;HaplotypeScore=6.5124;MLEAC=1;MLEAF=0.500;MQ=48.84;MQ0=0;MQRankSum=-3.052;QD=6.21;ReadPosRankSum=0.926;SB=-5.080e+02 GT:AD:DP:GQ:PL 0/1:88,71:159:99:1017,0,1589 chrXVI 24572 . G A 1137.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.722;DP=172;Dels=0.00;FS=5.472;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=46.40;MQ0=0;MQRankSum=-2.862;QD=6.61;ReadPosRankSum=-2.414;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:86,85:172:99:1167,0,1617 chrXVI 24575 . T C 1462.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.864;DP=168;Dels=0.00;FS=5.605;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=2.435;QD=8.70;ReadPosRankSum=3.159;SB=-7.500e+02 GT:AD:DP:GQ:PL 0/1:86,80:168:99:1492,0,1070 chrXVI 24587 . G T 906.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.685;DP=167;Dels=0.00;FS=0.575;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=44.17;MQ0=0;MQRankSum=-3.662;QD=5.43;ReadPosRankSum=-0.041;SB=-7.570e+02 GT:AD:DP:GQ:PL 0/1:83,82:167:99:936,0,1569 chrXVI 24614 . A G 800.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;DP=150;Dels=0.00;FS=0.618;HaplotypeScore=9.9749;MLEAC=1;MLEAF=0.500;MQ=46.02;MQ0=0;MQRankSum=-2.016;QD=5.33;ReadPosRankSum=3.047;SB=-6.060e+02 GT:AD:DP:GQ:PL 0/1:70,80:150:99:830,0,1100 chrXVI 24634 . A G 973.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880;DP=154;Dels=0.00;FS=4.191;HaplotypeScore=5.1717;MLEAC=1;MLEAF=0.500;MQ=48.88;MQ0=0;MQRankSum=-2.238;QD=6.32;ReadPosRankSum=1.192;SB=-6.300e+02 GT:AD:DP:GQ:PL 0/1:67,87:154:99:1003,0,1188 chrXVI 24641 . T G 1002.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DP=155;Dels=0.00;FS=4.349;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=49.86;MQ0=0;MQRankSum=2.566;QD=6.46;ReadPosRankSum=1.194;SB=-2.480e+02 GT:AD:DP:GQ:PL 0/1:91,62:155:99:1032,0,1122 chrXVI 24645 . G A 2758 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=18.26;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:2791,306,0 chrXVI 24708 . C T 1036.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.306;DP=150;Dels=0.00;FS=0.608;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=55.71;MQ0=0;MQRankSum=-1.550;QD=6.91;ReadPosRankSum=-0.147;SB=-5.850e+02 GT:AD:DP:GQ:PL 0/1:81,69:150:99:1066,0,1331 chrXVI 24809 . T C 1130.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.160;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=-0.751;QD=10.09;ReadPosRankSum=-0.603;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:50,62:112:99:1160,0,922 chrXVI 24844 . T C 2104 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.48;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2137,249,0 chrXVI 24847 . G T 914.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.718;DP=107;Dels=0.00;FS=0.717;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-1.231;QD=8.54;ReadPosRankSum=-0.811;SB=-5.900e+02 GT:AD:DP:GQ:PL 0/1:48,59:107:99:944,0,734 chrXVI 24867 . G A 878.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.698;DP=105;Dels=0.00;FS=3.692;HaplotypeScore=4.8527;MLEAC=1;MLEAF=0.500;MQ=51.14;MQ0=0;MQRankSum=-1.131;QD=8.36;ReadPosRankSum=-0.127;SB=-6.040e+02 GT:AD:DP:GQ:PL 0/1:43,62:105:99:908,0,591 chrXVI 24885 . T C 459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;DP=108;Dels=0.00;FS=6.212;HaplotypeScore=9.2539;MLEAC=1;MLEAF=0.500;MQ=47.57;MQ0=0;MQRankSum=-1.526;QD=4.25;ReadPosRankSum=-1.755;SB=-2.240e+02 GT:AD:DP:GQ:PL 0/1:59,48:108:99:489,0,767 chrXVI 24903 . G A 437.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DP=119;Dels=0.00;FS=9.089;HaplotypeScore=7.2253;MLEAC=1;MLEAF=0.500;MQ=44.78;MQ0=0;MQRankSum=-3.551;QD=3.67;ReadPosRankSum=0.487;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:69,50:119:99:467,0,1088 chrXVI 24944 . A G 234.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=44.27;MQ0=0;MQRankSum=-6.291;QD=2.21;ReadPosRankSum=1.584;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/1:68,38:106:99:264,0,1214 chrXVI 24945 . T C 237.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;DP=104;Dels=0.00;FS=1.646;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=43.92;MQ0=0;MQRankSum=-6.433;QD=2.28;ReadPosRankSum=1.332;SB=-2.820e+02 GT:AD:DP:GQ:PL 0/1:66,38:104:99:267,0,1294 chrXVI 24947 . A T 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;DP=101;Dels=0.00;FS=0.762;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=0;MQRankSum=-5.058;QD=2.56;ReadPosRankSum=1.370;SB=-3.000e+02 GT:AD:DP:GQ:PL 0/1:63,38:101:99:289,0,1189 chrXVI 24950 . G A 1374 SnpCluster AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=13.60;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1407,153,0 chrXVI 24954 . T C 232.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.922;DP=100;Dels=0.00;FS=0.773;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=43.78;MQ0=0;MQRankSum=-5.493;QD=2.32;ReadPosRankSum=1.893;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/1:62,38:100:99:262,0,1184 chrXVI 24955 . A G 1036.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.095;DP=103;Dels=0.00;FS=0.773;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=44.34;MQ0=0;MQRankSum=5.131;QD=10.06;ReadPosRankSum=-1.878;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:38,62:103:99:1066,0,301 chrXVI 24956 . C T 259.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.082;DP=105;Dels=0.00;FS=0.757;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=44.69;MQ0=0;MQRankSum=-6.025;QD=2.47;ReadPosRankSum=2.046;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:66,39:105:99:289,0,1142 chrXVI 24957 . T C 249.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;DP=107;Dels=0.00;FS=2.642;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=0;MQRankSum=-6.271;QD=2.33;ReadPosRankSum=2.251;SB=-2.930e+02 GT:AD:DP:GQ:PL 0/1:69,38:107:99:279,0,1158 chrXVI 24966 . A T 347.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=43.28;MQ0=0;MQRankSum=-7.555;QD=2.50;ReadPosRankSum=-1.204;SB=-5.280e+02 GT:AD:DP:GQ:PL 0/1:76,63:139:99:377,0,1449 chrXVI 24974 . G T 411.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.617;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=62.2787;MLEAC=1;MLEAF=0.500;MQ=43.62;MQ0=0;MQRankSum=-7.510;QD=2.82;ReadPosRankSum=-2.534;SB=-5.890e+02 GT:AD:DP:GQ:PL 0/1:74,72:146:99:441,0,1296 chrXVI 24980 . A T 364.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=142;Dels=0.00;FS=0.625;HaplotypeScore=67.2281;MLEAC=1;MLEAF=0.500;MQ=44.01;MQ0=0;MQRankSum=-7.544;QD=2.56;ReadPosRankSum=-0.976;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:76,66:142:99:394,0,1373 chrXVI 25057 . G A 692.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.640;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=1;MLEAF=0.500;MQ=55.07;MQ0=0;MQRankSum=-1.403;QD=4.71;ReadPosRankSum=-0.949;SB=-5.250e+02 GT:AD:DP:GQ:PL 0/1:84,63:147:99:722,0,1364 chrXVI 25069 . T C 800.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-4.406;DP=142;Dels=0.00;FS=3.053;HaplotypeScore=6.0830;MLEAC=1;MLEAF=0.500;MQ=55.63;MQ0=0;MQRankSum=-2.254;QD=5.63;ReadPosRankSum=0.127;SB=-5.500e+02 GT:AD:DP:GQ:PL 0/1:82,60:142:99:830,0,1474 chrXVI 25078 . T C 728.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.731;DP=144;Dels=0.00;FS=1.348;HaplotypeScore=6.0584;MLEAC=1;MLEAF=0.500;MQ=55.87;MQ0=0;MQRankSum=-1.551;QD=5.06;ReadPosRankSum=1.567;SB=-5.220e+02 GT:AD:DP:GQ:PL 0/1:88,56:144:99:758,0,1627 chrXVI 25079 . G A 776.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.719;DP=145;Dels=0.00;FS=1.355;HaplotypeScore=6.8470;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=0;MQRankSum=-2.463;QD=5.35;ReadPosRankSum=1.691;SB=-5.380e+02 GT:AD:DP:GQ:PL 0/1:89,56:145:99:806,0,1549 chrXVI 25149 . C T 835.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.415;DP=116;Dels=0.00;FS=4.629;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=0;MQRankSum=-0.331;QD=7.20;ReadPosRankSum=1.733;SB=-4.700e+02 GT:AD:DP:GQ:PL 0/1:66,49:116:99:865,0,1133 chrXVI 25185 . C T 843.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;DP=97;Dels=0.00;FS=0.783;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=53.48;MQ0=0;MQRankSum=1.888;QD=8.69;ReadPosRankSum=0.938;SB=-4.670e+02 GT:AD:DP:GQ:PL 0/1:42,52:97:99:873,0,723 chrXVI 25194 . A G 586.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.393;DP=85;Dels=0.00;FS=4.129;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=0;MQRankSum=-1.883;QD=6.89;ReadPosRankSum=-1.213;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:46,39:85:99:616,0,884 chrXVI 25200 . C T 556.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.838;DP=82;Dels=0.00;FS=2.970;HaplotypeScore=3.2847;MLEAC=1;MLEAF=0.500;MQ=51.36;MQ0=0;MQRankSum=-1.168;QD=6.78;ReadPosRankSum=-0.539;SB=-2.970e+02 GT:AD:DP:GQ:PL 0/1:46,35:82:99:586,0,824 chrXVI 25209 . T G 434.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;DP=82;Dels=0.00;FS=4.180;HaplotypeScore=5.7188;MLEAC=1;MLEAF=0.500;MQ=51.23;MQ0=0;MQRankSum=-0.984;QD=5.29;ReadPosRankSum=-0.155;SB=-2.750e+02 GT:AD:DP:GQ:PL 0/1:48,34:82:99:464,0,805 chrXVI 25269 . T C 2377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=3.042;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=0.541;QD=22.21;ReadPosRankSum=2.381;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2410,276,0 chrXVI 25365 . C T 1527.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.040;DP=148;Dels=0.00;FS=0.614;HaplotypeScore=12.4311;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=3.911;QD=10.32;ReadPosRankSum=-1.229;SB=-8.080e+02 GT:AD:DP:GQ:PL 0/1:67,79:148:99:1557,0,1176 chrXVI 25407 . G A 3138 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=11.8758;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.20;SB=-1.647e+03 GT:AD:DP:GQ:PL 1/1:0,146:148:99:3171,339,0 chrXVI 25497 . T C 2994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.6645;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.000;QD=21.39;ReadPosRankSum=1.658;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:1,139:140:99:3027,351,0 chrXVI 25524 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.9918;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.12;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2672,303,0 chrXVI 25566 . T C 2234 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=18.46;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2267,258,0 chrXVI 25569 . C T 722.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;DP=131;Dels=0.00;FS=3.193;HaplotypeScore=4.9534;MLEAC=1;MLEAF=0.500;MQ=49.29;MQ0=0;MQRankSum=-2.226;QD=5.51;ReadPosRankSum=-0.729;SB=-3.800e+02 GT:AD:DP:GQ:PL 0/1:68,62:131:99:752,0,1090 chrXVI 25623 . T C 2482 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=18.66;SB=-1.545e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2515,294,0 chrXVI 25632 . A G 2582 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=19.13;SB=-1.604e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2615,294,0 chrXVI 25648 . G A 1093.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.071;DP=157;Dels=0.00;FS=1.286;HaplotypeScore=6.9603;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=0;MQRankSum=-4.527;QD=6.96;ReadPosRankSum=0.192;SB=-5.360e+02 GT:AD:DP:GQ:PL 0/1:85,71:157:99:1123,0,1356 chrXVI 25667 . G A 1099.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.060;DP=181;Dels=0.00;FS=4.484;HaplotypeScore=8.9169;MLEAC=1;MLEAF=0.500;MQ=50.94;MQ0=0;MQRankSum=-3.207;QD=6.07;ReadPosRankSum=-0.444;SB=-6.570e+02 GT:AD:DP:GQ:PL 0/1:104,74:181:99:1129,0,1560 chrXVI 26085 . A G 2762 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.431;QD=18.05;ReadPosRankSum=2.417;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:2,149:153:99:2795,303,0 chrXVI 26114 . A G 3293.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.159;DP=150;Dels=0.00;FS=8.503;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=1.497;QD=21.95;ReadPosRankSum=2.942;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:4,145:150:99:3293,320,0 chrXVI 26200 . C T 2027 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=17.47;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2060,225,0 chrXVI 26204 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=18.70;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2183,231,0 chrXVI 26222 . T C 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=-1.286;QD=14.49;ReadPosRankSum=2.405;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:1627,183,0 chrXVI 26261 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=13.49;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1099,123,0 chrXVI 26265 . G C 986 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=13.15;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1019,117,0 chrXVI 26289 . G A 1142 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=14.64;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1175,123,0 chrXVI 26299 . T A 1029 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=13.19;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1062,114,0 chrXVI 26330 . C T 270 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;QD=7.30;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:33:303,33,0 chrXVI 26358 . C G 247 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=6.86;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:280,33,0 chrXVI 26365 . G A 300 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=7.89;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:36:333,36,0 chrXVI 26373 . A G 260 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=7.22;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:33:293,33,0 chrXVI 26397 . A G 351 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;QD=10.03;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:45:384,45,0 chrXVI 26402 . G A 363 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.03;MQ0=0;QD=9.81;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:45:396,45,0 chrXVI 26429 . T C 862 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=6.532;HaplotypeScore=3.5825;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.082;QD=13.68;ReadPosRankSum=1.677;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:895,102,0 chrXVI 26433 . T C 909 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.5490;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=13.57;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:942,111,0 chrXVI 26434 . G A 1022 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3376;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-1.060;QD=15.03;ReadPosRankSum=0.853;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1055,120,0 chrXVI 26592 . T C 3334.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.5508;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.045;QD=21.65;ReadPosRankSum=1.642;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,153:154:99:3334,387,0 chrXVI 26641 . A G 2427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=121;Dels=0.00;FS=6.589;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=0.444;QD=20.06;ReadPosRankSum=2.326;SB=-1.396e+03 GT:AD:DP:GQ:PL 1/1:2,117:121:99:2460,285,0 chrXVI 26688 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=24.03;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1883,204,0 chrXVI 26755 . T C 927 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.17;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:960,111,0 chrXVI 26758 . C T 939 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=17.72;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:972,108,0 chrXVI 26764 . T C 862 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;MQRankSum=-0.252;QD=15.96;ReadPosRankSum=2.359;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:2,52:54:99:895,105,0 chrXVI 26802 . A G 985 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=12.31;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1018,117,0 chrXVI 26818 . A G 1189 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.405;QD=12.65;ReadPosRankSum=1.658;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1222,141,0 chrXVI 26836 . T C 1501 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=3.268;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-1.199;QD=14.43;ReadPosRankSum=1.699;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1534,174,0 chrXVI 26869 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=16.66;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1882,204,0 chrXVI 27022 . C T 2850 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.4987;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.92;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2883,312,0 chrXVI 27052 . G A 2475 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.97;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2508,276,0 chrXVI 27058 . G A 2396 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.02;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2429,267,0 chrXVI 27128 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.76;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1756,192,0 chrXVI 27168 . T C 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=89;Dels=0.00;FS=12.634;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.230;QD=21.11;ReadPosRankSum=2.897;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,85:89:99:1912,216,0 chrXVI 27460 . A G 1041 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.54;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1074,120,0 chrXVI 27466 . C T 904 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=13.70;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:937,102,0 chrXVI 27655 . T C 1801 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.19;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1834,210,0 chrXVI 27817 . G T 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.11;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1280,141,0 chrXVI 27841 . A G 945 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=20.54;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:978,114,0 chrXVI 27877 . C T 761 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.02;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:794,87,0 chrXVI 27919 . A G 836 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.58;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:869,102,0 chrXVI 27981 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.68;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1584,171,0 chrXVI 28006 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.60;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1459,168,0 chrXVI 28054 . A G 1455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.300;QD=16.17;ReadPosRankSum=2.340;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1488,171,0 chrXVI 28147 . T G 1199 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.04;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:57:99:1232,135,0 chrXVI 28206 . G A 1191 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.61;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1224,135,0 chrXVI 28214 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.64;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1133,126,0 chrXVI 28237 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=17.83;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1103,120,0 chrXVI 28261 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=55.8796;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=17.35;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1109,123,0 chrXVI 28312 . C A 1365 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.50;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1398,153,0 chrXVI 28409 . G A 115.13 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=1.62;SB=-4.513e+01 GT:AD:DP:GQ:PL 1/1:0,12:71:18:148,18,0 chrXVI 28513 . T A 1844 SnpCluster AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.72;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1877,204,0 chrXVI 28514 . T G 1752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.723;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.927;QD=19.69;ReadPosRankSum=2.367;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1785,204,0 chrXVI 28521 . T G 1718 SnpCluster AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.52;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1751,201,0 chrXVI 28641 . A G 2009 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=18.78;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2042,234,0 chrXVI 28674 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=19.71;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1866,201,0 chrXVI 28686 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.3810;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=17.21;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1806,201,0 chrXVI 28821 . G A 2596 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.28;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2629,297,0 chrXVI 28890 . T C 2776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.388;DP=126;Dels=0.00;FS=8.918;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.913;QD=22.03;ReadPosRankSum=3.388;SB=-1.419e+03 GT:AD:DP:GQ:PL 1/1:4,122:126:99:2809,318,0 chrXVI 28948 . T A 2742 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=23.84;SB=-1.440e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2775,297,0 chrXVI 29018 . C T 1007 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=10.83;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1040,114,0 chrXVI 29021 . T C 918 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.680;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;MQRankSum=-1.661;QD=9.37;ReadPosRankSum=1.697;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:951,111,0 chrXVI 29036 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=10.54;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1161,129,0 chrXVI 29091 . A G 2223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.045;DP=122;Dels=0.00;FS=4.107;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.417;QD=18.22;ReadPosRankSum=1.102;SB=-1.146e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2256,255,0 chrXVI 29134 . A G 2863 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.60;SB=-1.592e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2896,333,0 chrXVI 29156 . T G 2385 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.49;SB=-1.563e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2418,273,0 chrXVI 29188 . A G 2012 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.05;SB=-1.195e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2045,243,0 chrXVI 29202 . A C 1743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.708;DP=125;Dels=0.00;FS=12.050;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.736;QD=13.94;ReadPosRankSum=3.733;SB=-1.431e+03 GT:AD:DP:GQ:PL 1/1:5,118:125:99:1776,204,0 chrXVI 29222 . G A 1985 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=15.51;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2018,225,0 chrXVI 29290 . A G 2472 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=3.668;HaplotypeScore=7.5960;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.514;QD=19.31;ReadPosRankSum=1.705;SB=-1.335e+03 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2505,291,0 chrXVI 29296 . T C 2379 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9557;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.19;SB=-1.380e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2412,276,0 chrXVI 29325 . T A 1961 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.20;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1994,222,0 chrXVI 29370 . C T 1497 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.45;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1530,171,0 chrXVI 29433 . T G 1868 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7463;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.87;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1901,216,0 chrXVI 29599 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=80.9626;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=16.98;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1765,204,0 chrXVI 29749 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.86;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1410,153,0 chrXVI 30033 . A G 1723 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.38;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1756,204,0 chrXVI 30747 . G A 2561 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.01;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2594,282,0 chrXVI 30844 . A G 2284 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.58;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2317,267,0 chrXVI 30877 . A T 2349 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.74;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2382,258,0 chrXVI 31264 . G T 1590 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.93;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1623,183,0 chrXVI 31780 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1176,129,0 chrXVI 33001 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.64;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1663,192,0 chrXVI 33006 . C T 1695 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.87;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1728,189,0 chrXVI 33642 . A T 1378 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1411,153,0 chrXVI 33723 . A G 654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.144;QD=15.21;ReadPosRankSum=2.336;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:75:687,75,0 chrXVI 33753 . T C 522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=33;Dels=0.00;FS=3.081;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.051;QD=15.82;ReadPosRankSum=2.297;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:60:555,60,0 chrXVI 33804 . T C 798 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:831,96,0 chrXVI 33858 . A G 1019 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1052,120,0 chrXVI 33951 . T C 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.947;QD=18.89;ReadPosRankSum=1.686;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1469,168,0 chrXVI 34248 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.28;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1709,189,0 chrXVI 34350 . A T 1666 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.636;QD=20.32;ReadPosRankSum=1.601;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1699,186,0 chrXVI 34401 . T C 1153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=63;Dels=0.00;FS=9.545;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.737;QD=18.30;ReadPosRankSum=2.371;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1186,135,0 chrXVI 34470 . T C 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=14.3512;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.19;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1288,150,0 chrXVI 34506 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.90;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1386,156,0 chrXVI 34641 . A G 1884 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.83;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1917,222,0 chrXVI 34674 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.154;QD=20.12;ReadPosRankSum=1.694;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1864,213,0 chrXVI 34989 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7438;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.93;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2356,264,0 chrXVI 35005 . C T 2235 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.94;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2268,252,0 chrXVI 35220 . C T 1788 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=25.18;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1821,198,0 chrXVI 35338 . T A 1289 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=17.66;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1322,150,0 chrXVI 35342 . A G 1226 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;MQRankSum=-0.385;QD=16.79;ReadPosRankSum=1.636;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1259,144,0 chrXVI 35346 . T C 1213 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=16.85;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1246,144,0 chrXVI 35385 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.35;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1465,159,0 chrXVI 35451 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8822;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.51;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1668,183,0 chrXVI 35512 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.16;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1545,177,0 chrXVI 35541 . C T 1884 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.41;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1917,216,0 chrXVI 35577 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6723;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.76;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2383,258,0 chrXVI 35664 . G A 1482 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=18.30;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1515,168,0 chrXVI 35667 . G A 1366 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=17.29;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1399,156,0 chrXVI 35673 . G T 1424 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=18.26;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1457,162,0 chrXVI 35711 . C T 1180 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=16.86;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1213,132,0 chrXVI 35724 . T C 1102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=16.95;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1135,129,0 chrXVI 35760 . C T 1106 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=18.13;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1139,129,0 chrXVI 35776 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=15.63;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,70:76:99:1221,135,0 chrXVI 35931 . C T 1932 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4504;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.71;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1965,216,0 chrXVI 36074 . T C 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.393;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=0.000;QD=20.67;ReadPosRankSum=1.575;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1873,213,0 chrXVI 36081 . C T 1778 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=19.54;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1811,204,0 chrXVI 36100 . T C 2012 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.32;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2045,231,0 chrXVI 36252 . G C 889 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.79;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:922,105,0 chrXVI 36315 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.77;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1388,150,0 chrXVI 36342 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.03;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1375,150,0 chrXVI 36372 . G A 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.19;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1288,141,0 chrXVI 36468 . G A 2459 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.42;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:1,102:105:99:2492,270,0 chrXVI 36549 . C T 1082 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1115,120,0 chrXVI 36714 . A G 1858 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.39;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1891,213,0 chrXVI 36818 . G A 2059 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.14;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2092,228,0 chrXVI 36977 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.1364;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.29;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1692,183,0 chrXVI 37078 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.21;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1839,198,0 chrXVI 37088 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.82;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1615,177,0 chrXVI 37233 . A G 2358 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=22.25;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2391,279,0 chrXVI 37347 . A C 1905 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.93;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1938,219,0 chrXVI 37424 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=13.22;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1381,150,0 chrXVI 37447 . C A 1207 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=11.39;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1240,135,0 chrXVI 37452 . T A 1193 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=10.75;SB=-1.206e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1226,135,0 chrXVI 37458 . T C 1069 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=33.83;MQ0=0;QD=9.81;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1102,126,0 chrXVI 37477 . T C 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=2.910;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.52;MQ0=0;MQRankSum=-2.028;QD=9.76;ReadPosRankSum=2.309;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:2,103:105:99:1058,120,0 chrXVI 37482 . T C 990 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=9.80;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1023,120,0 chrXVI 37527 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=10.39;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1082,126,0 chrXVI 37556 . T C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.291;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.811;QD=11.18;ReadPosRankSum=1.658;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1084,126,0 chrXVI 37569 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=11.01;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1068,117,0 chrXVI 37575 . G A 942 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=10.95;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:975,105,0 chrXVI 37721 . A C 1915 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.944;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=2.220;QD=18.96;ReadPosRankSum=3.829;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:6,95:101:99:1948,219,0 chrXVI 37722 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.04;FS=0.000;HaplotypeScore=6.3092;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.81;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2014,219,0 chrXVI 37911 . A G 2391 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.14;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2424,270,0 chrXVI 37953 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.10;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1983,225,0 chrXVI 38082 . A G 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.366;QD=20.09;ReadPosRankSum=1.699;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,103:109:99:2223,255,0 chrXVI 38237 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.35;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1581,174,0 chrXVI 38357 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.05;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2033,228,0 chrXVI 38388 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.69;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1884,201,0 chrXVI 38391 . G A 1614 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=16.99;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1647,183,0 chrXVI 38453 . C A 2037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-1.227;QD=21.00;ReadPosRankSum=1.047;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2070,228,0 chrXVI 38493 . T G 2390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.3252;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=1.171;QD=22.76;ReadPosRankSum=1.699;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2423,273,0 chrXVI 38521 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7033;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.74;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1875,201,0 chrXVI 38867 . C G 656 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=13.96;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:78:689,78,0 chrXVI 38891 . G A 41.11 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.810;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9704;MLEAC=1;MLEAF=0.500;MQ=47.89;MQ0=0;MQRankSum=-2.699;QD=1.11;ReadPosRankSum=2.142;SB=-2.511e+01 GT:AD:DP:GQ:PL 0/1:34,3:37:13:71,0,13 chrXVI 38892 . T C 39.06 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.9704;MLEAC=1;MLEAF=0.500;MQ=47.89;MQ0=0;MQRankSum=-2.643;QD=1.06;ReadPosRankSum=2.142;SB=-1.806e+01 GT:AD:DP:GQ:PL 0/1:34,3:37:16:69,0,16 chrXVI 38907 . G T 180.03 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=9.6700;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=6.92;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:24:213,24,0 chrXVI 39040 . C T 521 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=26.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:60:554,60,0 chrXVI 39105 . A G 756 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:34:87:789,87,0 chrXVI 39420 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.40;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1253,144,0 chrXVI 39840 . T C 1930 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.69;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1963,225,0 chrXVI 40325 . A G 1941 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1974,225,0 chrXVI 40976 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=2.921;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.178;QD=18.76;ReadPosRankSum=2.340;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:2,88:90:99:1721,198,0 chrXVI 40996 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.68;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1589,183,0 chrXVI 41008 . G C 1423 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=80.3030;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=17.35;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1456,165,0 chrXVI 41075 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.96;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1782,195,0 chrXVI 41264 . T C 2040 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.55;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2073,240,0 chrXVI 41379 . T A 2675 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.57;SB=-1.588e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2708,291,0 chrXVI 42125 . G T 2216 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0139;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.33;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2249,249,0 chrXVI 42254 . A G 2156 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.60;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2189,249,0 chrXVI 42781 . T G 1326 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.68;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1359,153,0 chrXVI 42883 . C A 848 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.56;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:881,96,0 chrXVI 43601 . A G 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=72;Dels=0.00;FS=6.849;HaplotypeScore=9.2474;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=2.381;QD=18.93;ReadPosRankSum=1.628;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1396,153,0 chrXVI 43682 . A G 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.042;DP=74;Dels=0.00;FS=2.464;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.012;QD=12.30;ReadPosRankSum=3.236;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:4,69:74:99:943,111,0 chrXVI 43754 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.03;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2031,228,0 chrXVI 43802 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.94;SB=-1.356e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2373,255,0 chrXVI 43892 . T A 1286 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1319,141,0 chrXVI 44051 . A C 1480 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.00;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1513,171,0 chrXVI 44122 . G T 1939 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.63;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1972,210,0 chrXVI 44191 . G A 1455 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.40;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1488,162,0 chrXVI 44258 . A G 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.192;QD=21.33;ReadPosRankSum=1.604;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1185,135,0 chrXVI 44377 . T G 636 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=15.14;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:75:669,75,0 chrXVI 44552 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.484;QD=18.85;ReadPosRankSum=2.294;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1522,171,0 chrXVI 44755 . T C 853 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.96;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:886,99,0 chrXVI 44764 . T C 824 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.91;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:857,99,0 chrXVI 44799 . G A 1049 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.79;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1082,117,0 chrXVI 44845 . G C 1410 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.69;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1443,162,0 chrXVI 44920 . C G 1665 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=13.87;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:1,118:120:99:1698,198,0 chrXVI 44929 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=13.97;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:1668,183,0 chrXVI 45173 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4751;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.77;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1535,165,0 chrXVI 45271 . G A 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.905;QD=12.90;ReadPosRankSum=-0.079;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1168,126,0 chrXVI 45292 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=12.93;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:938,102,0 chrXVI 45800 . G T 1598 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.31;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1631,174,0 chrXVI 45967 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.12;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1914,207,0 chrXVI 46105 . T A 1371 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.78;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1404,153,0 chrXVI 46114 . C A 1236 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.91;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1269,138,0 chrXVI 46273 . A G 1280 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=17.53;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1313,147,0 chrXVI 46282 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=15.93;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1196,132,0 chrXVI 46291 . A G 1198 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=15.76;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1231,141,0 chrXVI 46435 . T C 1205 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.78;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1238,138,0 chrXVI 46547 . A G 1095 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=62;Dels=0.00;FS=2.793;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.578;QD=17.66;ReadPosRankSum=2.371;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:1128,129,0 chrXVI 46551 . G T 1130 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=19.15;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1163,126,0 chrXVI 46637 . A G 859 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3651;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.07;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:892,102,0 chrXVI 46831 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.67;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1869,222,0 chrXVI 46921 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.84;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1563,180,0 chrXVI 47208 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.74;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1326,147,0 chrXVI 47273 . T C 1590 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.545;QD=21.49;ReadPosRankSum=-1.358;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1623,180,0 chrXVI 47999 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.16;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1585,171,0 chrXVI 48109 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.28;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2204,252,0 chrXVI 48355 . A G 1903 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1936,219,0 chrXVI 48458 . G T 1835 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9902;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.17;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1868,204,0 chrXVI 48853 . A G 1002 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;MQRankSum=-0.936;QD=13.54;ReadPosRankSum=1.639;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1035,117,0 chrXVI 48861 . A G 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=6.113;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=-2.581;QD=14.14;ReadPosRankSum=2.900;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:99:1023,117,0 chrXVI 48872 . G C 1007 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.35;MQ0=0;QD=14.59;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1040,120,0 chrXVI 48882 . G A 854 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=11.70;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:887,99,0 chrXVI 48890 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.49;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:96:814,96,0 chrXVI 48893 . G A 660 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.85;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:78:693,78,0 chrXVI 48910 . C T 691 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.34;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:78:724,78,0 chrXVI 48912 . C T 727 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.98;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:81:760,81,0 chrXVI 48923 . A G 675 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=10.55;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:81:708,81,0 chrXVI 48925 . T C 778 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=11.44;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:811,93,0 chrXVI 48927 . A C 836 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=11.45;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:869,99,0 chrXVI 48951 . A G 921 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=12.79;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:954,108,0 chrXVI 48995 . A G 1089 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=15.78;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1122,129,0 chrXVI 49036 . A G 1031 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=6.946;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.562;QD=18.75;ReadPosRankSum=2.360;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1064,126,0 chrXVI 49093 . A G 1046 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.35;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1079,126,0 chrXVI 49416 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1374,150,0 chrXVI 50190 . C T 1517 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1550,168,0 chrXVI 50846 . A G 1169 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.98;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1202,135,0 chrXVI 50850 . A G 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=5.825;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.506;QD=17.12;ReadPosRankSum=1.626;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,64:66:99:1163,135,0 chrXVI 50873 . G A 1074 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.84;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1107,117,0 chrXVI 51430 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.96;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1752,195,0 chrXVI 52021 . C T 1787 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1820,198,0 chrXVI 52066 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1928,210,0 chrXVI 52180 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1506,168,0 chrXVI 52231 . G A 1462 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.24;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1495,165,0 chrXVI 52375 . A C 2154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=4.586;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.490;QD=23.16;ReadPosRankSum=1.694;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:2187,249,0 chrXVI 52500 . G A 1511 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.59;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1544,168,0 chrXVI 52597 . C T 1584 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1617,177,0 chrXVI 52965 . A G 685 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.581;QD=13.43;ReadPosRankSum=2.782;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:3,48:51:84:718,84,0 chrXVI 53017 . C G 1033 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=17.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1066,120,0 chrXVI 53041 . T A 896 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:929,99,0 chrXVI 53084 . A C 597 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=16.14;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,35:37:75:630,75,0 chrXVI 53120 . A T 817 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.03;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:93:850,93,0 chrXVI 53226 . G A 574 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.94;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:69:607,69,0 chrXVI 53320 . G A 818 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.06;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:93:851,93,0 chrXVI 53378 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.93;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,41:44:90:778,90,0 chrXVI 53381 . T C 871 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.02;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:904,105,0 chrXVI 53425 . A T 2817 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=17.28;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2850,309,0 chrXVI 53429 . C T 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=166;Dels=0.00;FS=5.574;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.584;QD=17.30;ReadPosRankSum=-0.480;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:1,165:166:99:2904,315,0 chrXVI 53867 . A G 1724 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2758;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.409;QD=19.16;ReadPosRankSum=1.693;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1757,198,0 chrXVI 54725 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.9797;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.37;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2426,273,0 chrXVI 54755 . T C 1964 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.84;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1997,225,0 chrXVI 54761 . A G 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=6.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.857;QD=18.73;ReadPosRankSum=0.717;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1887,216,0 chrXVI 55209 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=21.70;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2116,237,0 chrXVI 55232 . C T 1533 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=19.91;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1566,177,0 chrXVI 55247 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.18;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1339,153,0 chrXVI 55257 . G T 1397 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.91;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1430,153,0 chrXVI 55362 . C T 2515 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.1065;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.87;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2548,273,0 chrXVI 55419 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1734,195,0 chrXVI 55474 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.07;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1158,132,0 chrXVI 55625 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.52;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1490,159,0 chrXVI 55881 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.47;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1741,195,0 chrXVI 55961 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.496;DP=93;Dels=0.01;FS=7.551;HaplotypeScore=7.4341;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.240;QD=21.91;ReadPosRankSum=3.668;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:5,87:92:99:2071,240,0 chrXVI 56011 . C A 2279 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=22.13;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2312,252,0 chrXVI 56116 . A G 2177 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-1.428;QD=19.61;ReadPosRankSum=2.937;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:3,108:111:99:2210,252,0 chrXVI 56137 . C T 1952 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=20.99;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1985,213,0 chrXVI 56154 . G A 1414 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7979;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=19.92;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1447,159,0 chrXVI 56155 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7979;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=19.26;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1381,150,0 chrXVI 56290 . T C 1532 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.15;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1565,180,0 chrXVI 56381 . A T 1134 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=0;MQRankSum=-1.732;QD=22.68;ReadPosRankSum=1.663;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1167,126,0 chrXVI 56383 . C T 1051 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=21.45;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1084,120,0 chrXVI 56388 . C A 933 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=22.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:966,105,0 chrXVI 56389 . G C 898 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=21.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:931,105,0 chrXVI 56392 . G A 926 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=22.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:959,105,0 chrXVI 56397 . C T 909 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=22.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:99:942,102,0 chrXVI 56404 . C T 846 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=22.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:96:879,96,0 chrXVI 56714 . T C 46.97 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=5;QD=5.87;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:5,3:8:9:79,9,0 chrXVI 56724 . C A 111.26 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=4;QD=11.13;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:4,6:10:15:144,15,0 chrXVI 56772 . C A 153.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=13.91;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:1,10:11:21:186,21,0 chrXVI 56774 . T C 148.06 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=2;QD=13.46;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:2,9:11:21:181,21,0 chrXVI 56785 . C T 167.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=1;QD=16.71;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:10:21:200,21,0 chrXVI 62944 . G A 522 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=20.08;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:555,63,0 chrXVI 62987 . A C 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=5.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:48,6,0 chrXVI 62992 . T C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=7.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:46,6,0 chrXVI 63147 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=3.37;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:48,6,0 chrXVI 63159 . A C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=2.48;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:46,6,0 chrXVI 63190 . A T 17.84 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=3.57;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,5:5:6:49,6,0 chrXVI 63267 . A G 272 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=19.43;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:305,36,0 chrXVI 63276 . A G 260 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=18.57;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:293,36,0 chrXVI 63292 . C T 417 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=18.13;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:450,51,0 chrXVI 63327 . A G 605 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=20.17;SB=-1.820e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:638,78,0 chrXVI 63378 . T A 185.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;QD=18.50;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:218,27,0 chrXVI 63379 . T C 179.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=0;QD=17.90;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:212,27,0 chrXVI 63398 . C T 54.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=13.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:87,12,0 chrXVI 63416 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=1.00;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:6:43,6,0 chrXVI 63455 . T C 672 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=23.17;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:87:705,87,0 chrXVI 63459 . G A 672 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.03;MQ0=0;QD=21.00;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:0,29:32:87:705,87,0 chrXVI 63473 . T C 912 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=22.80;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:945,120,0 chrXVI 63532 . A G 476 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=19.83;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:509,66,0 chrXVI 63549 . G A 374 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=0;QD=19.68;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:51:407,51,0 chrXVI 63550 . G A 372 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=20.67;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:51:405,51,0 chrXVI 63565 . A G 154.03 PASS AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=17.11;SB=-2.597e+01 GT:AD:DP:GQ:PL 1/1:0,9:9:24:187,24,0 chrXVI 63582 . C T 22.79 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:54,6,0 chrXVI 63583 . A C 20.80 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:52,6,0 chrXVI 63584 . C T 24.78 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,2:2:6:56,6,0 chrXVI 63616 . A G 94.26 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=11.78;SB=-2.220e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:15:127,15,0 chrXVI 63623 . A G 119.13 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=10.83;SB=-2.213e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:152,18,0 chrXVI 63627 . G A 122.13 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=10.18;SB=-2.214e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:18:155,18,0 chrXVI 63657 . A G 268 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=14.11;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:36:301,36,0 chrXVI 63673 . T C 283 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=14.15;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:316,39,0 chrXVI 63681 . T A 247 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=14.53;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:280,33,0 chrXVI 63705 . G A 246 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=16.40;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:279,33,0 chrXVI 63706 . G A 252 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=16.80;SB=-1.032e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:33:285,33,0 chrXVI 63712 . T C 240 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=0;QD=14.12;SB=-1.060e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:273,33,0 chrXVI 63723 . T A 243 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=14.29;SB=-1.073e-02 GT:AD:DP:GQ:PL 1/1:0,17:17:33:276,33,0 chrXVI 63727 . T C 209 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=13.06;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:0,16:16:30:242,30,0 chrXVI 63738 . A G 208 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;MQRankSum=0.102;QD=12.24;ReadPosRankSum=1.531;SB=-1.506e-02 GT:AD:DP:GQ:PL 1/1:1,16:17:30:241,30,0 chrXVI 63762 . G A 202 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=9.18;SB=-1.519e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:30:235,30,0 chrXVI 63783 . A G 149.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=0;QD=6.77;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,21:22:24:182,24,0 chrXVI 63784 . C G 149.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=0;QD=6.77;SB=-4.096e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:182,24,0 chrXVI 63792 . A G 147.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.56;MQ0=0;QD=6.68;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,22:22:24:180,24,0 chrXVI 63801 . T G 151.03 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=0;QD=8.39;SB=-4.093e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:24:184,24,0 chrXVI 63806 . G C 148.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=0;QD=7.79;SB=-4.094e-02 GT:AD:DP:GQ:PL 1/1:0,19:19:24:181,24,0 chrXVI 63812 . C T 102.13 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=5.67;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,18:18:18:135,18,0 chrXVI 63815 . T G 123.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.32;MQ0=0;QD=6.15;SB=-7.496e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:21:156,21,0 chrXVI 63823 . T A 127.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.06;SB=-7.490e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:160,21,0 chrXVI 63825 . C A 127.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.06;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:160,21,0 chrXVI 63827 . C T 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.28;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:164,21,0 chrXVI 63831 . G A 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.28;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:164,21,0 chrXVI 63833 . A T 131.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.28;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:164,21,0 chrXVI 63835 . G A 134.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.03;MQ0=0;QD=7.45;SB=-7.494e-02 GT:AD:DP:GQ:PL 1/1:0,18:18:21:167,21,0 chrXVI 63843 . A G 109.13 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=0;QD=5.20;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,21:21:18:142,18,0 chrXVI 63849 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=5.12;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:99,12,0 chrXVI 63850 . A G 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=4.81;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:95,12,0 chrXVI 63853 . C G 62.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=4.81;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:95,12,0 chrXVI 63854 . C T 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=5.04;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:98,12,0 chrXVI 63863 . G A 67.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=5.19;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:100,12,0 chrXVI 63864 . A C 61.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=4.73;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:94,12,0 chrXVI 63865 . A G 63.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=4.89;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:96,12,0 chrXVI 63868 . G A 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=5.12;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:99,12,0 chrXVI 63870 . A G 64.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=4.96;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:97,12,0 chrXVI 63872 . T C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.39;MQ0=0;QD=5.12;SB=-5.215e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:12:99,12,0 chrXVI 63877 . A G 65.51 SnpCluster AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=4.68;SB=-5.221e-01 GT:AD:DP:GQ:PL 1/1:0,14:14:12:98,12,0 chrXVI 63883 . G C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.25;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:71,9,0 chrXVI 63885 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.25;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:71,9,0 chrXVI 63888 . A T 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.25;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:71,9,0 chrXVI 63890 . G A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.25;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:71,9,0 chrXVI 63900 . C A 38.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=3.00;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:71,9,0 chrXVI 64043 . C T 71.51 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=3.11;SB=-2.852e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:12:104,12,0 chrXVI 64053 . A G 63.51 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=0;QD=2.89;SB=-2.752e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:12:96,12,0 chrXVI 64086 . C T 160.06 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=4.33;SB=-7.497e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:21:193,21,0 chrXVI 64090 . G A 208.01 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=33.8278;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=5.62;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,37:37:27:241,27,0 chrXVI 64109 . A C 204.01 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.25;SB=-2.382e-02 GT:AD:DP:GQ:PL 1/1:0,48:48:27:237,27,0 chrXVI 64140 . A C 405 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.10;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:51:438,51,0 chrXVI 64149 . G A 471 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.81;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:54:504,54,0 chrXVI 64155 . T C 439 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.96;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:54:472,54,0 chrXVI 64165 . G A 383 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.70;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:416,45,0 chrXVI 64166 . T G 370 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.41;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:45:403,45,0 chrXVI 64188 . T C 314 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=0;QD=6.68;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:39:347,39,0 chrXVI 64204 . C T 515 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=10.73;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:60:548,60,0 chrXVI 64208 . G C 485 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=9.15;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:53:57:518,57,0 chrXVI 64229 . G C 474 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=9.48;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:57:507,57,0 chrXVI 64299 . C T 408 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=7.70;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:48:441,48,0 chrXVI 64309 . G T 244 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.85;MQ0=0;QD=5.67;SB=-4.502e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:30:277,30,0 chrXVI 64310 . C T 246 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=5.86;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:30:279,30,0 chrXVI 64316 . G A 214 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=4.86;SB=-4.902e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:30:247,30,0 chrXVI 64326 . T C 224 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=6.05;SB=-4.602e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:30:257,30,0 chrXVI 64540 . A C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=0.182;QD=20.61;ReadPosRankSum=1.687;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1599,180,0 chrXVI 64673 . C A 989 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=15.95;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1022,111,0 chrXVI 64923 . T A 1135 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1168,129,0 chrXVI 65188 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2075,225,0 chrXVI 66210 . A G 1687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=2.972;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.225;QD=18.14;ReadPosRankSum=2.132;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1720,195,0 chrXVI 66216 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.00;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1705,192,0 chrXVI 66237 . C T 1764 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.37;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1797,201,0 chrXVI 66393 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.36;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2150,234,0 chrXVI 66527 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.45;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1251,144,0 chrXVI 66703 . C T 1694 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.193;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.258;QD=23.21;ReadPosRankSum=-0.831;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1727,192,0 chrXVI 66802 . T G 1580 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.51;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,77:81:99:1613,183,0 chrXVI 67558 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1081,123,0 chrXVI 68882 . G C 1504 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.89;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1537,177,0 chrXVI 68965 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;DP=68;Dels=0.00;FS=6.172;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.508;QD=20.07;ReadPosRankSum=2.718;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1398,156,0 chrXVI 69311 . A T 1066 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1099,117,0 chrXVI 69402 . T A 909 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:942,102,0 chrXVI 69661 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:948,102,0 chrXVI 69892 . T A 1142 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.76;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1175,132,0 chrXVI 70081 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.87;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,76:79:99:1524,171,0 chrXVI 70261 . A G 1448 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.280;QD=20.69;ReadPosRankSum=1.682;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1481,168,0 chrXVI 70402 . A G 2692 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=142;Dels=0.00;FS=3.577;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.885;QD=18.96;ReadPosRankSum=1.707;SB=-1.461e+03 GT:AD:DP:GQ:PL 1/1:1,138:142:99:2725,306,0 chrXVI 70567 . A C 2084 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2117,240,0 chrXVI 70801 . C T 2610 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2643,288,0 chrXVI 70885 . T C 1752 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=5.465;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.276;QD=19.91;ReadPosRankSum=1.653;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1785,210,0 chrXVI 71060 . A G 1323 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.42;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1356,150,0 chrXVI 71516 . A G 1244 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.47;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1277,141,0 chrXVI 71576 . G T 1211 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.53;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1244,141,0 chrXVI 71603 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=16.75;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:837,96,0 chrXVI 71610 . T C 835 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.15;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:868,96,0 chrXVI 71643 . G A 809 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.59;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:842,93,0 chrXVI 71807 . G A 987 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.67;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1020,108,0 chrXVI 72506 . G T 1888 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.31;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1921,213,0 chrXVI 72844 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.86;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1760,189,0 chrXVI 72872 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.06;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1655,186,0 chrXVI 73071 . G A 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=65;Dels=0.00;FS=15.119;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.506;QD=16.40;ReadPosRankSum=1.519;SB=-2.201e+01 GT:AD:DP:GQ:PL 1/1:1,64:65:97:1099,97,0 chrXVI 73249 . T A 571 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=14.27;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:66:604,66,0 chrXVI 73338 . C G 1202 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1235,141,0 chrXVI 74040 . G C 809 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.47;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:96:842,96,0 chrXVI 74327 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.20;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2144,237,0 chrXVI 74884 . G C 1465 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.28;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1498,168,0 chrXVI 74885 . C T 1458 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.18;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1491,168,0 chrXVI 75329 . T C 1172 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.49;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1205,138,0 chrXVI 75355 . A G 896 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.57;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:929,105,0 chrXVI 75461 . G A 833 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.33;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:866,99,0 chrXVI 75921 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.96;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2318,249,0 chrXVI 76198 . C T 1985 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.55;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2018,225,0 chrXVI 76413 . G C 1817 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.97;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1850,213,0 chrXVI 76532 . A G 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=0.219;QD=15.48;ReadPosRankSum=1.613;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1426,162,0 chrXVI 76538 . C T 1440 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.82;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1473,159,0 chrXVI 76573 . A C 1415 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=15.05;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1448,168,0 chrXVI 76639 . A G 2861 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.58;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2894,333,0 chrXVI 76655 . G C 2700 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=20.15;SB=-1.615e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2733,300,0 chrXVI 76657 . A C 2607 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.60;SB=-1.617e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:2640,297,0 chrXVI 76987 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2939;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.08;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2036,225,0 chrXVI 77082 . G A 2118 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.97;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2151,234,0 chrXVI 77183 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2546;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.34;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1160,126,0 chrXVI 77339 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.77;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1650,177,0 chrXVI 77440 . A G 1431 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.45;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1464,168,0 chrXVI 77452 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.27;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1466,162,0 chrXVI 77707 . G C 1806 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6368;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.02;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1839,207,0 chrXVI 78844 . A G 1086 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.536;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=-0.257;QD=20.11;ReadPosRankSum=1.668;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1119,132,0 chrXVI 78895 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.08;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1298,153,0 chrXVI 79182 . T C 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=5.006;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=-1.489;QD=12.11;ReadPosRankSum=1.672;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:84:723,84,0 chrXVI 79263 . T A 1287 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=15.89;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1320,141,0 chrXVI 79268 . C A 1362 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.24;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1395,150,0 chrXVI 79421 . T C 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.017;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.732;QD=16.83;ReadPosRankSum=1.613;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1009,114,0 chrXVI 79518 . A G 1101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.955;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=65.7811;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.470;QD=16.43;ReadPosRankSum=2.683;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1134,126,0 chrXVI 79588 . A G 2149 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3826;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.39;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2182,243,0 chrXVI 79670 . T A 1842 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.02;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1875,210,0 chrXVI 79795 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.82;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2106,228,0 chrXVI 79913 . T C 2521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=135;Dels=0.00;FS=6.118;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-0.446;QD=18.67;ReadPosRankSum=2.286;SB=-1.653e+03 GT:AD:DP:GQ:PL 1/1:2,133:135:99:2554,288,0 chrXVI 79964 . T G 2389 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.11;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2422,276,0 chrXVI 79994 . C T 2007 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7464;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.58;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2040,222,0 chrXVI 80417 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.42;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1304,147,0 chrXVI 80834 . T C 1230 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.64;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1263,141,0 chrXVI 80857 . A G 1277 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.578;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.420;QD=19.06;ReadPosRankSum=1.680;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1310,150,0 chrXVI 80890 . G A 1503 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.79;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1536,174,0 chrXVI 80908 . A G 1030 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.09;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1063,123,0 chrXVI 80992 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.09;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1331,150,0 chrXVI 81006 . C T 1363 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=20.04;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1396,150,0 chrXVI 81007 . A G 1256 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=18.47;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1289,147,0 chrXVI 81010 . T A 1236 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=17.17;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1269,147,0 chrXVI 81079 . A G 1690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=85;Dels=0.00;FS=13.576;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.601;QD=19.88;ReadPosRankSum=2.391;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:2,82:85:99:1723,192,0 chrXVI 81157 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.18;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1431,153,0 chrXVI 81248 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.68;SB=-1.150e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2158,234,0 chrXVI 81619 . A G 2311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=115;Dels=0.00;FS=7.597;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.769;QD=20.10;ReadPosRankSum=2.384;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:2,110:115:99:2344,264,0 chrXVI 81763 . G A 2203 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2236,243,0 chrXVI 81896 . T C 1737 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.91;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1770,207,0 chrXVI 82072 . T C 2477 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.5974;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.50;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2510,282,0 chrXVI 82826 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1013,111,0 chrXVI 83471 . A T 1921 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.46;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1954,216,0 chrXVI 83873 . A G 2566 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.0842;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.20;SB=-1.535e+03 GT:AD:DP:GQ:PL 1/1:0,123:127:99:2599,282,0 chrXVI 84812 . T C 2096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=118;Dels=0.00;FS=5.907;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.598;QD=17.76;ReadPosRankSum=1.671;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,112:118:99:2129,243,0 chrXVI 84945 . G A 1976 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.48;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2009,228,0 chrXVI 85148 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.11;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1720,195,0 chrXVI 85175 . C T 1712 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.40;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1745,195,0 chrXVI 85280 . G A 1259 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.64;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1292,141,0 chrXVI 85327 . C T 921 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=14.85;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:954,111,0 chrXVI 85358 . T C 680 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=11.15;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:713,81,0 chrXVI 85364 . C T 626 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=10.61;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:72:659,72,0 chrXVI 85399 . G A 289 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=47.9640;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=4.98;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:36:322,36,0 chrXVI 85516 . A C 2685 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.37;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2718,306,0 chrXVI 85601 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.127;QD=21.74;ReadPosRankSum=2.377;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1511,168,0 chrXVI 85621 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.90;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1496,174,0 chrXVI 85729 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.71;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1466,162,0 chrXVI 86146 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.69;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1984,225,0 chrXVI 86233 . C T 2119 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.54;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2152,234,0 chrXVI 86390 . C T 3347.01 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=12.7704;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.24;SB=-1.733e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3347,360,0 chrXVI 86437 . T C 2942 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=19.88;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2975,342,0 chrXVI 86446 . A G 2959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=152;Dels=0.00;FS=4.270;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.695;QD=19.47;ReadPosRankSum=1.709;SB=-1.364e+03 GT:AD:DP:GQ:PL 1/1:1,146:152:99:2992,336,0 chrXVI 86479 . A C 2679 PASS AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.14;SB=-1.432e+03 GT:AD:DP:GQ:PL 1/1:0,137:140:99:2712,306,0 chrXVI 86542 . T C 2665 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.49;SB=-1.438e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2698,303,0 chrXVI 86653 . T C 1125 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=14.06;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1158,138,0 chrXVI 86686 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=12.79;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:96:890,96,0 chrXVI 86689 . T C 774 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=11.73;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:93:807,93,0 chrXVI 86716 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6797;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=12.93;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:964,105,0 chrXVI 86878 . C T 1907 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.96;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1940,213,0 chrXVI 86905 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.44;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2138,231,0 chrXVI 87058 . G T 1697 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.96;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1730,186,0 chrXVI 87311 . A C 1761 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.7853;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.22;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1794,204,0 chrXVI 87434 . A G 2063 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.43;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2096,240,0 chrXVI 87500 . T C 1421 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=16.52;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1454,165,0 chrXVI 87503 . T G 1545 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=84;Dels=0.00;FS=4.613;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.406;QD=18.39;ReadPosRankSum=1.604;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,80:84:99:1578,174,0 chrXVI 87521 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.77;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1792,198,0 chrXVI 87677 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.06;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1844,201,0 chrXVI 87803 . T C 1522 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=91;Dels=0.01;FS=6.063;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.326;QD=16.73;ReadPosRankSum=2.832;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:3,87:90:99:1555,174,0 chrXVI 87892 . A C 1851 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.34;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1884,216,0 chrXVI 87944 . A G 1834 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.936;QD=21.08;ReadPosRankSum=1.692;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1867,210,0 chrXVI 88210 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.32;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1653,186,0 chrXVI 88281 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.4557;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.197;QD=17.46;ReadPosRankSum=1.688;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1412,159,0 chrXVI 88438 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.51;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1489,174,0 chrXVI 88600 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.424;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.260;QD=20.34;ReadPosRankSum=1.680;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1396,159,0 chrXVI 88778 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.56;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1588,174,0 chrXVI 88834 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.85;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1672,189,0 chrXVI 89075 . G T 1251 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.95;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1284,138,0 chrXVI 89089 . A G 1110 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.86;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1143,129,0 chrXVI 89101 . T G 1175 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.03;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1208,138,0 chrXVI 89283 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.14;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1483,168,0 chrXVI 89305 . A G 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.241;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.057;QD=20.81;ReadPosRankSum=1.687;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1635,180,0 chrXVI 89899 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3210;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.28;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2012,228,0 chrXVI 90568 . A G 1181 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1214,138,0 chrXVI 91540 . T C 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.118;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.676;QD=20.63;ReadPosRankSum=1.605;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:1,81:84:99:1766,195,0 chrXVI 91999 . T C 1162 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.13;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1195,135,0 chrXVI 92875 . A G 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.019;QD=23.28;ReadPosRankSum=0.102;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1616,180,0 chrXVI 92986 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1581,171,0 chrXVI 93712 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.33;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1766,210,0 chrXVI 93759 . G C 1798 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.33;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1831,207,0 chrXVI 93996 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1083,120,0 chrXVI 94218 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1085,123,0 chrXVI 94369 . T C 1031 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.04;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1064,120,0 chrXVI 94414 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.77;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1217,135,0 chrXVI 95158 . T C 2140 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=102;Dels=0.00;FS=4.480;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.017;QD=20.98;ReadPosRankSum=1.664;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2173,243,0 chrXVI 95370 . C G 1378 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.23;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1411,156,0 chrXVI 95576 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.56;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1585,171,0 chrXVI 95750 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.38;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:950,105,0 chrXVI 96130 . T C 666 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.18;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:699,78,0 chrXVI 96310 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=4.890;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.234;QD=21.80;ReadPosRankSum=1.685;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1646,183,0 chrXVI 96363 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.922;QD=18.10;ReadPosRankSum=1.687;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1427,162,0 chrXVI 96371 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.64;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1303,144,0 chrXVI 96475 . T A 1118 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=15.75;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1151,126,0 chrXVI 96486 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=15.39;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1218,135,0 chrXVI 96613 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.20;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1538,171,0 chrXVI 97135 . C T 1659 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.55;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1692,183,0 chrXVI 97177 . T C 1470 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.94;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1503,168,0 chrXVI 97252 . A G 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=3.067;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-2.141;QD=18.77;ReadPosRankSum=2.185;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1084,126,0 chrXVI 97603 . G A 811 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=12.10;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:96:844,96,0 chrXVI 97609 . A G 924 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5238;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=13.39;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:957,114,0 chrXVI 97663 . T C 1075 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.08;MQ0=0;QD=14.73;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1108,129,0 chrXVI 97672 . T C 1075 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;QD=14.73;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1108,126,0 chrXVI 97696 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=0;QD=17.91;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1179,132,0 chrXVI 97714 . C T 792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=5.7764;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;MQRankSum=0.928;QD=14.14;ReadPosRankSum=1.670;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:93:825,93,0 chrXVI 97885 . G A 1169 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.2595;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.71;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1202,132,0 chrXVI 98068 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.97;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1342,153,0 chrXVI 98320 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.58;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1325,150,0 chrXVI 98464 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1534,168,0 chrXVI 98717 . G A 1073 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.87;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1106,120,0 chrXVI 98881 . G T 929 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.12;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:962,102,0 chrXVI 98933 . T C 1001 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.24;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1034,117,0 chrXVI 98969 . C A 1021 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.63;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1054,117,0 chrXVI 98992 . G A 1014 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=16.90;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1047,117,0 chrXVI 99018 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.61;SB=-2.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1019,111,0 chrXVI 99074 . T G 1061 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.29;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1094,123,0 chrXVI 99139 . C T 931 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.62;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:964,105,0 chrXVI 99146 . C T 910 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.22;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:943,102,0 chrXVI 99260 . A C 917 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.51;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:950,105,0 chrXVI 99582 . A C 1371 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2563;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.247;QD=21.42;ReadPosRankSum=0.522;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1404,146,0 chrXVI 100535 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.37;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1561,177,0 chrXVI 100633 . C T 1658 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1691,183,0 chrXVI 101698 . C T 1642 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.52;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1675,186,0 chrXVI 101755 . A G 1352 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=2.679;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.948;QD=19.59;ReadPosRankSum=2.307;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1385,156,0 chrXVI 101890 . C T 1957 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.60;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1990,219,0 chrXVI 101962 . T C 1877 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1910,213,0 chrXVI 102324 . A G 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=87;Dels=0.00;FS=2.761;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.204;QD=19.31;ReadPosRankSum=2.365;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:2,85:87:99:1713,198,0 chrXVI 102751 . G T 1397 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.54;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1430,162,0 chrXVI 102951 . A G 1187 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.46;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1220,141,0 chrXVI 103007 . A C 1014 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.10;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1047,123,0 chrXVI 103016 . A T 926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.426;QD=15.18;ReadPosRankSum=1.675;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:959,108,0 chrXVI 103137 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1380,153,0 chrXVI 104754 . T C 204.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.69;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:237,27,0 chrXVI 104784 . C T 478 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:54:511,54,0 chrXVI 104905 . A T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=3.76;SB=-5.080e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:50,6,0 chrXVI 105285 . C T 1439 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.25;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1472,159,0 chrXVI 105527 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6445;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.52;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2024,222,0 chrXVI 105737 . A G 585 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=30.7083;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.73;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:618,72,0 chrXVI 105817 . T A 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=11.919;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.012;QD=20.59;ReadPosRankSum=2.403;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:2,103:105:99:2195,240,0 chrXVI 105914 . C T 1871 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.79;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1904,207,0 chrXVI 105960 . T C 1199 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;MQRankSum=-0.091;QD=15.57;ReadPosRankSum=1.687;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1232,141,0 chrXVI 105966 . T C 1103 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;MQRankSum=-0.607;QD=14.32;ReadPosRankSum=1.687;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1136,129,0 chrXVI 105969 . A T 1071 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=13.91;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1104,120,0 chrXVI 106300 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.10;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1943,210,0 chrXVI 106318 . T G 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=0.019;QD=16.59;ReadPosRankSum=1.618;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:1559,183,0 chrXVI 106351 . T C 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1190;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.371;QD=17.63;ReadPosRankSum=1.577;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2008,225,0 chrXVI 106396 . G A 2583 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.66;SB=-1.498e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2616,288,0 chrXVI 106429 . A G 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=7.509;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.011;QD=19.42;ReadPosRankSum=2.366;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:2,116:118:99:2324,267,0 chrXVI 106450 . G A 2153 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.058;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7797;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.664;QD=18.89;ReadPosRankSum=0.773;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:2,111:114:99:2186,222,0 chrXVI 106507 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.50;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2248,246,0 chrXVI 106600 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.9725;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=16.61;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1677,186,0 chrXVI 106812 . A G 2355 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.03;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2388,264,0 chrXVI 106893 . T C 1717 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.823;QD=21.20;ReadPosRankSum=1.689;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1750,198,0 chrXVI 107496 . T C 1223 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.909;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.046;QD=15.29;ReadPosRankSum=2.107;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:2,77:80:99:1256,144,0 chrXVI 107814 . T A 2781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=128;Dels=0.00;FS=2.634;HaplotypeScore=7.2709;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.701;QD=21.73;ReadPosRankSum=2.411;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:2,126:128:99:2814,306,0 chrXVI 108350 . T C 1847 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=13.5843;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.08;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,89:92:99:1880,213,0 chrXVI 109353 . A G 2332 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.42;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2365,279,0 chrXVI 110811 . C A 1467 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.5878;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.89;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1500,162,0 chrXVI 110925 . T C 1772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=96;Dels=0.00;FS=11.134;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.734;QD=18.46;ReadPosRankSum=2.926;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:3,92:96:99:1805,210,0 chrXVI 114050 . G A 2513 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.13;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2546,276,0 chrXVI 115170 . G T 1091 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1124,123,0 chrXVI 115392 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.49;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1765,207,0 chrXVI 115785 . A T 2002 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2035,228,0 chrXVI 116203 . C A 1901 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.7775;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.60;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,89:97:99:1934,213,0 chrXVI 116499 . T C 1521 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=7.453;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.265;QD=17.09;ReadPosRankSum=1.693;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1554,177,0 chrXVI 116778 . C T 1159 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1192,129,0 chrXVI 117949 . C G 1978 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.82;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2011,228,0 chrXVI 117982 . A G 1735 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.53;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1768,201,0 chrXVI 118097 . C G 1756 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.05;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,101:103:99:1789,201,0 chrXVI 118152 . T C 1915 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.34;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1948,219,0 chrXVI 118252 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.37;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1744,195,0 chrXVI 118260 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.90;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1768,207,0 chrXVI 119014 . G A 2069 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.11;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2102,225,0 chrXVI 119106 . G A 2660 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.7032;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.54;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2693,291,0 chrXVI 119500 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.23;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1856,198,0 chrXVI 119575 . T C 2249 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.39;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2282,261,0 chrXVI 119623 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.791;QD=20.11;ReadPosRankSum=1.647;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:85:99:1742,198,0 chrXVI 119669 . C T 1997 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.44;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2030,219,0 chrXVI 120397 . G A 1162 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.78;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1195,129,0 chrXVI 120598 . A G 2173 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3335;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.23;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2206,258,0 chrXVI 120748 . T C 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.458;QD=18.69;ReadPosRankSum=1.699;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2051,228,0 chrXVI 121006 . A T 2840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=145;Dels=0.00;FS=2.813;HaplotypeScore=7.7002;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.301;QD=19.59;ReadPosRankSum=2.415;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:2,143:145:99:2873,306,0 chrXVI 121018 . A G 2423 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.83;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,140:144:99:2456,282,0 chrXVI 121081 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.83;SB=-1.102e+03 GT:AD:DP:GQ:PL 1/1:0,104:107:99:1941,219,0 chrXVI 121959 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.88;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:807,90,0 chrXVI 122768 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.21;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1763,198,0 chrXVI 123092 . G A 1856 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.09;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1889,207,0 chrXVI 123192 . T G 1793 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9062;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.70;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1826,210,0 chrXVI 123371 . T C 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=6.398;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.084;QD=17.98;ReadPosRankSum=2.391;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:2,81:84:99:1543,180,0 chrXVI 123389 . A G 1471 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.51;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1504,168,0 chrXVI 123680 . T C 1948 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8909;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.17;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1981,225,0 chrXVI 123818 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7942;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.87;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1637,189,0 chrXVI 124031 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.41;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1993,219,0 chrXVI 124310 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.5484;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.70;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1679,186,0 chrXVI 124850 . T C 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.390;QD=21.80;ReadPosRankSum=1.694;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:1,90:92:99:2039,225,0 chrXVI 124946 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1121;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.18;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2251,246,0 chrXVI 125111 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4749;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1855,216,0 chrXVI 125504 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.57;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1892,207,0 chrXVI 125654 . G A 2701 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2734,306,0 chrXVI 125757 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.40;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2094,222,0 chrXVI 126095 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1807,204,0 chrXVI 126838 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1547,183,0 chrXVI 127887 . G A 1175 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.4432;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.51;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1208,132,0 chrXVI 127901 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.3215;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.36;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1113,120,0 chrXVI 127985 . C T 1905 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1938,210,0 chrXVI 128710 . G A 1989 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2022,222,0 chrXVI 128965 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.9064;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=17.74;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1754,189,0 chrXVI 129067 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3638;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.03;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1804,198,0 chrXVI 129189 . C G 2995 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.09;SB=-1.411e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:3028,339,0 chrXVI 129227 . C T 2335 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.9036;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.30;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,116:121:99:2368,255,0 chrXVI 129263 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.81;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2291,249,0 chrXVI 129341 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=16.87;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1669,180,0 chrXVI 129343 . A T 1529 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.44;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1562,177,0 chrXVI 129709 . T C 2424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.176;QD=20.54;ReadPosRankSum=1.673;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2457,279,0 chrXVI 129787 . T C 2772 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.83;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2805,318,0 chrXVI 130644 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.7625;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.20;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1615,177,0 chrXVI 130647 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=90;Dels=0.00;FS=6.170;HaplotypeScore=5.6286;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.374;QD=16.73;ReadPosRankSum=2.394;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,87:90:99:1539,177,0 chrXVI 130737 . A G 2456 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.95;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2489,291,0 chrXVI 130793 . A C 1801 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1834,210,0 chrXVI 130935 . G A 2020 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7130;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.04;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2053,225,0 chrXVI 130944 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.01;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1839,213,0 chrXVI 131043 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.14;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2578,297,0 chrXVI 131289 . C T 1647 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.56;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1680,183,0 chrXVI 131325 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.77;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1483,159,0 chrXVI 131623 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1533,165,0 chrXVI 131754 . T C 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.256;QD=15.25;ReadPosRankSum=1.602;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1253,147,0 chrXVI 131758 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.07;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1296,141,0 chrXVI 131820 . C A 1484 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.8921;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.46;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1517,168,0 chrXVI 132377 . A G 90.26 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:15:123,15,0 chrXVI 132681 . G T 404 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=13.93;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:48:437,48,0 chrXVI 132693 . C T 387 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.33;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:420,45,0 chrXVI 132838 . A C 1043 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.96;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1076,120,0 chrXVI 132855 . T C 986 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.346;QD=18.96;ReadPosRankSum=1.663;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:2,50:52:99:1019,114,0 chrXVI 132909 . A G 738 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=13.18;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:87:771,87,0 chrXVI 132915 . A G 785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=7.926;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.444;QD=12.27;ReadPosRankSum=2.373;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:93:818,93,0 chrXVI 133150 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.22;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1600,174,0 chrXVI 133177 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=15.81;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1298,141,0 chrXVI 133186 . G A 1202 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=15.61;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1235,135,0 chrXVI 133289 . A G 2042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=3.090;HaplotypeScore=10.4333;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-1.638;QD=18.56;ReadPosRankSum=1.638;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2075,234,0 chrXVI 133367 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=17.25;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2224,249,0 chrXVI 133388 . C G 2335 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=16.92;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,135:138:99:2368,270,0 chrXVI 133543 . A G 1299 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.560;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.8425;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.223;QD=19.10;ReadPosRankSum=1.528;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1332,132,0 chrXVI 133582 . T A 1157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=74;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.144;QD=15.64;ReadPosRankSum=1.684;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1190,132,0 chrXVI 133621 . A C 1001 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=13.53;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1034,117,0 chrXVI 133867 . T A 1155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.789;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.474;QD=16.99;ReadPosRankSum=1.681;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1188,129,0 chrXVI 133951 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.02;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:1168,129,0 chrXVI 134014 . A G 1990 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.70;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2023,237,0 chrXVI 134125 . T C 1828 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.107;QD=22.02;ReadPosRankSum=2.389;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:2,79:83:99:1861,207,0 chrXVI 134176 . T C 1675 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.18;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1708,198,0 chrXVI 134206 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.28;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1629,186,0 chrXVI 134476 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.6156;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.49;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1782,201,0 chrXVI 134518 . T C 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=112;Dels=0.00;FS=3.037;HaplotypeScore=11.4118;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.347;QD=18.64;ReadPosRankSum=2.315;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:2,108:112:99:2121,240,0 chrXVI 135326 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.88;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2207,249,0 chrXVI 135712 . T C 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.770;QD=19.31;ReadPosRankSum=1.668;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1095,123,0 chrXVI 135960 . T C 647 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.49;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,37:37:75:680,75,0 chrXVI 136128 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;MQRankSum=-1.732;QD=21.81;ReadPosRankSum=1.696;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2127,240,0 chrXVI 136628 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=22.26;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1302,150,0 chrXVI 136917 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1590,177,0 chrXVI 137386 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.68;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1378,159,0 chrXVI 137442 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=61.4963;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.38;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1293,150,0 chrXVI 137748 . T C 1611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.102;QD=20.65;ReadPosRankSum=1.687;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1644,186,0 chrXVI 138435 . G A 1009 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=25.22;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:40:99:1042,108,0 chrXVI 138747 . G A 1388 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.41;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1421,159,0 chrXVI 139202 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.14;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1870,207,0 chrXVI 139546 . C A 955 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:988,126,0 chrXVI 139547 . T A 895 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=12.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:928,122,0 chrXVI 139548 . A G 869 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=12.24;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:902,119,0 chrXVI 139583 . C T 340 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=7.39;SB=-7.059e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:42:373,42,0 chrXVI 139611 . C T 481 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.52;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:63:514,63,0 chrXVI 139660 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.98;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1228,132,0 chrXVI 139685 . G T 1299 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.51;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1332,147,0 chrXVI 139893 . T A 652 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.48;SB=-1.350e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:75:685,75,0 chrXVI 140178 . A G 559 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.47;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,30:32:69:592,69,0 chrXVI 140372 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.68;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1023,117,0 chrXVI 140565 . G A 1017 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.95;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1050,117,0 chrXVI 140586 . T C 1141 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.67;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1174,132,0 chrXVI 140784 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.78;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1405,153,0 chrXVI 141211 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1945,210,0 chrXVI 141333 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=16.75;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1356,159,0 chrXVI 141645 . G C 1128 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.49;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1161,135,0 chrXVI 141675 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=17.18;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1493,162,0 chrXVI 141699 . G T 1487 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=16.90;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1520,165,0 chrXVI 141900 . C T 733 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=15.60;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:84:766,84,0 chrXVI 141903 . A T 739 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=16.07;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:84:772,84,0 chrXVI 142384 . A T 1366 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.936;QD=18.46;ReadPosRankSum=1.404;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1399,153,0 chrXVI 142530 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.42;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1688,183,0 chrXVI 142545 . A T 1497 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.04;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1530,165,0 chrXVI 142584 . C T 1267 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.10;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1300,141,0 chrXVI 143242 . A G 1608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;DP=99;Dels=0.00;FS=5.208;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.169;QD=16.24;ReadPosRankSum=3.368;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:4,95:99:99:1641,186,0 chrXVI 143261 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.00;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1563,168,0 chrXVI 143341 . C G 973 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3512;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=14.31;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1006,114,0 chrXVI 143342 . T A 1086 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4726;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=16.45;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1119,123,0 chrXVI 143447 . A T 1438 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.46;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1471,162,0 chrXVI 143469 . A G 1250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=65;Dels=0.02;FS=10.119;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.725;QD=19.23;ReadPosRankSum=2.293;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1283,144,0 chrXVI 143626 . A C 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=17.37;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1110,126,0 chrXVI 143745 . A G 1132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.075;QD=19.19;ReadPosRankSum=1.673;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1165,138,0 chrXVI 143773 . T C 1143 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.71;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1176,132,0 chrXVI 143841 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.98;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1132,123,0 chrXVI 143864 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.05;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1119,123,0 chrXVI 143870 . C T 903 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.04;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:936,102,0 chrXVI 143885 . C T 1044 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.32;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1077,117,0 chrXVI 143935 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.35;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1009,111,0 chrXVI 143952 . G A 1161 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2340;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=16.83;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,65:69:99:1194,129,0 chrXVI 144102 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=24.05;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1524,165,0 chrXVI 144259 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.42;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1768,198,0 chrXVI 144415 . C T 1341 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.89;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1374,150,0 chrXVI 144429 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.40;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1284,141,0 chrXVI 144486 . T C 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;DP=74;Dels=0.00;FS=6.330;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.223;QD=18.41;ReadPosRankSum=2.381;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:2,70:74:99:1395,156,0 chrXVI 144595 . G A 2242 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.65;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2275,252,0 chrXVI 144737 . T C 790 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;MQRankSum=-1.237;QD=12.34;ReadPosRankSum=1.347;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:96:823,96,0 chrXVI 145101 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-0.226;QD=19.07;ReadPosRankSum=1.682;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1368,156,0 chrXVI 145109 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.07;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1398,159,0 chrXVI 145227 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.43;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1738,195,0 chrXVI 145251 . A G 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.195;QD=22.17;ReadPosRankSum=1.683;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1607,180,0 chrXVI 145329 . A G 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=0.650;QD=21.86;ReadPosRankSum=1.660;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:99:1104,123,0 chrXVI 145358 . A T 1133 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.23;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1166,126,0 chrXVI 145367 . T G 1074 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.26;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1107,120,0 chrXVI 145411 . A T 1587 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.04;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1620,174,0 chrXVI 145599 . C G 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.32;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1293,147,0 chrXVI 145717 . G C 1356 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.19;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1389,159,0 chrXVI 145885 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1153,135,0 chrXVI 145943 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.96;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1493,168,0 chrXVI 146064 . C T 1970 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2003,222,0 chrXVI 146345 . T C 1033 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.13;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1066,120,0 chrXVI 146388 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.57;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1070,117,0 chrXVI 146533 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.79;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1947,219,0 chrXVI 146758 . T G 1030 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.91;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1063,120,0 chrXVI 146933 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.53;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1429,159,0 chrXVI 146952 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.97;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1111,120,0 chrXVI 146964 . G A 974 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.79;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1007,111,0 chrXVI 147195 . T C 1032 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.20;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1065,120,0 chrXVI 147209 . C T 970 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=14.70;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1003,111,0 chrXVI 147215 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=14.76;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1125,126,0 chrXVI 147254 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.53;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1225,138,0 chrXVI 147305 . C T 1514 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.29;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1547,168,0 chrXVI 147862 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=8.623;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.463;QD=21.42;ReadPosRankSum=2.313;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1575,180,0 chrXVI 147934 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1503,165,0 chrXVI 148159 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1601,186,0 chrXVI 148309 . G A 1372 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1405,159,0 chrXVI 149427 . T G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.565;DP=87;Dels=0.00;FS=6.169;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.165;QD=18.17;ReadPosRankSum=2.918;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:3,83:87:99:1614,183,0 chrXVI 149499 . A T 1306 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.66;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1339,147,0 chrXVI 149586 . C T 1694 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1727,189,0 chrXVI 149714 . T C 1451 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.61;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1484,171,0 chrXVI 150165 . A G 856 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.450;QD=17.47;ReadPosRankSum=1.662;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:889,102,0 chrXVI 150219 . C A 1548 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.10;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1581,171,0 chrXVI 150295 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.36;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1411,153,0 chrXVI 150500 . T C 2136 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.02;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2169,246,0 chrXVI 151045 . A G 1738 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=95;Dels=0.00;FS=5.430;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.053;QD=18.29;ReadPosRankSum=2.926;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:3,92:95:99:1771,204,0 chrXVI 151173 . G A 1999 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7567;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.40;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2032,222,0 chrXVI 151370 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.62;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1302,147,0 chrXVI 151590 . A C 646 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.00;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:679,78,0 chrXVI 151591 . G T 644 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.52;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:677,72,0 chrXVI 151839 . C T 3359.01 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.52;SB=-1.542e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:3359,357,0 chrXVI 152392 . A G 1146 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.207;QD=17.10;ReadPosRankSum=1.680;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1179,138,0 chrXVI 152472 . A G 936 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.02;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:969,111,0 chrXVI 153125 . C T 1639 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.62;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1672,189,0 chrXVI 153447 . A G 1370 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1403,159,0 chrXVI 153797 . T C 1970 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.18;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2003,228,0 chrXVI 154089 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.75;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1514,162,0 chrXVI 154152 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1449,156,0 chrXVI 154194 . A G 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.942;QD=16.85;ReadPosRankSum=2.325;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1027,117,0 chrXVI 154283 . A C 757 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.92;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:790,87,0 chrXVI 154334 . T C 776 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.42;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:93:809,93,0 chrXVI 154558 . C T 561 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.34;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:66:594,66,0 chrXVI 154623 . A G 660 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:693,81,0 chrXVI 154971 . T A 1505 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1538,174,0 chrXVI 155088 . T G 1900 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1933,222,0 chrXVI 155233 . T C 1165 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.27;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1198,135,0 chrXVI 155280 . T C 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.896;QD=21.16;ReadPosRankSum=1.673;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1260,147,0 chrXVI 155901 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.67;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1666,192,0 chrXVI 156304 . T A 845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=57.2622;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.821;QD=14.82;ReadPosRankSum=1.003;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:878,102,0 chrXVI 156309 . C T 488 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=50.5866;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=8.87;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:69:521,69,0 chrXVI 156745 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.10;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1845,213,0 chrXVI 156772 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.13;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1315,141,0 chrXVI 156922 . A G 2554 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.28;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2587,288,0 chrXVI 157382 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.81;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:984,105,0 chrXVI 157700 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.10;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1315,141,0 chrXVI 157722 . G A 1171 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.69;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1204,132,0 chrXVI 157745 . T C 1155 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.79;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1188,135,0 chrXVI 158127 . A G 1171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=3.655;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.613;QD=19.85;ReadPosRankSum=1.613;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1204,141,0 chrXVI 158238 . A T 1044 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.64;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1077,117,0 chrXVI 158279 . A C 874 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.84;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:907,105,0 chrXVI 158444 . T G 1632 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.40;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1665,192,0 chrXVI 159629 . T C 2038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.196;QD=21.01;ReadPosRankSum=1.696;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2071,240,0 chrXVI 160357 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.92;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1458,156,0 chrXVI 160565 . T A 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.595;QD=21.03;ReadPosRankSum=1.678;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1400,153,0 chrXVI 160706 . A G 1771 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.531;QD=20.59;ReadPosRankSum=1.692;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1804,204,0 chrXVI 160790 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1849,201,0 chrXVI 160868 . A G 1432 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.519;QD=22.03;ReadPosRankSum=1.679;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1465,165,0 chrXVI 161120 . T C 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.202;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.022;QD=19.27;ReadPosRankSum=1.687;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1517,157,0 chrXVI 161445 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9870;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=17.72;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1592,171,0 chrXVI 161456 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=18.07;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1352,144,0 chrXVI 161462 . C T 1247 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.78;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1280,144,0 chrXVI 161489 . C T 894 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=12.42;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:927,102,0 chrXVI 161498 . T C 809 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=3.461;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;MQRankSum=-0.415;QD=11.24;ReadPosRankSum=1.049;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:842,99,0 chrXVI 161510 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=10.85;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:890,105,0 chrXVI 161519 . G A 1084 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=12.90;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1117,123,0 chrXVI 161768 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.85;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1815,207,0 chrXVI 161856 . G A 1759 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.91;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1792,198,0 chrXVI 161895 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.05;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1858,201,0 chrXVI 161906 . A G 1687 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.85;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1720,195,0 chrXVI 161921 . G A 1844 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=19.83;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1877,207,0 chrXVI 161957 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.82;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1539,171,0 chrXVI 161996 . A T 1594 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-0.577;QD=19.20;ReadPosRankSum=1.689;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1627,177,0 chrXVI 162002 . G C 1581 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.60;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1614,183,0 chrXVI 162337 . C T 1086 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.39;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1119,120,0 chrXVI 162394 . A T 460 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=23;Dels=0.04;FS=13.424;HaplotypeScore=6.3593;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.158;QD=20.00;ReadPosRankSum=1.576;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:57:493,57,0 chrXVI 162442 . T G 802 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.91;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:93:835,93,0 chrXVI 162467 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.47;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:99:925,105,0 chrXVI 162487 . G A 549 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.96;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:63:582,63,0 chrXVI 162525 . G A 604 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=8.7435;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.57;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,26:27:69:637,69,0 chrXVI 162596 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.60;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1378,153,0 chrXVI 162746 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=23.44;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1252,141,0 chrXVI 162815 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.69;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1485,168,0 chrXVI 162884 . A T 1688 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.34;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1721,186,0 chrXVI 163022 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5350;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.36;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1892,210,0 chrXVI 163025 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.9566;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.05;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1824,201,0 chrXVI 163124 . G A 1354 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;DP=82;Dels=0.00;FS=3.846;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.563;QD=16.51;ReadPosRankSum=0.823;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,79:82:99:1387,136,0 chrXVI 163127 . A G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=77;Dels=0.00;FS=4.393;HaplotypeScore=3.9594;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=1.012;QD=17.14;ReadPosRankSum=1.417;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1353,128,0 chrXVI 163169 . C T 1552 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.69;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1585,177,0 chrXVI 163239 . A G 2150 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.72;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2183,246,0 chrXVI 163301 . T A 3122 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.96;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:3155,345,0 chrXVI 163406 . G T 1977 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.97;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2010,216,0 chrXVI 163412 . C A 1688 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.22;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1721,198,0 chrXVI 163478 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4364;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=14.71;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1386,153,0 chrXVI 163613 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.41;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,129:130:99:2556,282,0 chrXVI 163732 . T C 2088 SnpCluster AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.48;SB=-1.291e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2121,240,0 chrXVI 163733 . G T 2200 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=19.13;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2233,240,0 chrXVI 163739 . A G 1989 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=117;Dels=0.00;FS=5.886;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.400;QD=17.00;ReadPosRankSum=2.783;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:3,113:117:99:2022,231,0 chrXVI 163777 . C A 1880 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.00;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1913,207,0 chrXVI 163861 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.75;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1610,174,0 chrXVI 164063 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=18.84;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1427,153,0 chrXVI 164740 . A G 1163 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.914;QD=15.93;ReadPosRankSum=1.684;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,71:73:99:1196,135,0 chrXVI 165213 . T C 1426 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.39;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1459,168,0 chrXVI 165244 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.56;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1578,180,0 chrXVI 165730 . T C 676 filter AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=9.26;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,73:73:81:709,81,0 chrXVI 165775 . T A 1080 filter AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4750;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=10.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1113,120,0 chrXVI 165823 . C T 96.26 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=2.35;SB=-2.729e-01 GT:AD:DP:GQ:PL 1/1:0,41:41:15:129,15,0 chrXVI 165899 . C G 750 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:90:783,90,0 chrXVI 165921 . T A 985 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=25.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1018,105,0 chrXVI 166118 . A C 1399 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.54;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1432,165,0 chrXVI 166158 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1532,168,0 chrXVI 166274 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.044;QD=20.10;ReadPosRankSum=1.688;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1621,180,0 chrXVI 166465 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1654,177,0 chrXVI 166927 . G C 1365 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8682;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.00;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1398,156,0 chrXVI 167227 . T C 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=81;Dels=0.00;FS=6.189;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.494;QD=18.30;ReadPosRankSum=2.887;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:3,77:81:99:1515,171,0 chrXVI 167661 . A C 2070 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.71;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2103,240,0 chrXVI 167905 . C G 1073 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.90;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1106,126,0 chrXVI 167998 . G A 674 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=14.65;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:78:707,78,0 chrXVI 167999 . A G 698 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=15.17;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:731,84,0 chrXVI 168007 . G T 779 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=13.91;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:90:812,90,0 chrXVI 168021 . T C 696 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=12.43;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:81:729,81,0 chrXVI 168022 . C T 692 SnpCluster AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=12.36;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:81:725,81,0 chrXVI 168031 . C T 686 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;QD=11.25;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:81:719,81,0 chrXVI 168037 . T C 738 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=11.01;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:87:771,87,0 chrXVI 168040 . T C 769 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=5.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;MQRankSum=-1.435;QD=10.99;ReadPosRankSum=1.584;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:90:802,90,0 chrXVI 168073 . T G 868 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=11.57;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:901,105,0 chrXVI 168076 . A G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;MQRankSum=1.553;QD=11.25;ReadPosRankSum=2.322;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:899,99,0 chrXVI 168354 . T A 1100 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.00;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1133,123,0 chrXVI 168374 . C T 1018 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=19.96;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1051,114,0 chrXVI 168450 . C T 1533 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=1.282;QD=19.65;ReadPosRankSum=1.687;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1566,168,0 chrXVI 169035 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.62;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1289,144,0 chrXVI 169165 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.61;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1546,174,0 chrXVI 169475 . G A 910 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.78;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:943,102,0 chrXVI 169544 . G A 566 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=12.30;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:66:599,66,0 chrXVI 169613 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.6293;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.13;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1219,132,0 chrXVI 169651 . A G 877 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=13.92;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:910,105,0 chrXVI 169653 . A G 838 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=13.97;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:871,99,0 chrXVI 169654 . A T 872 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=7.361;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=-1.874;QD=14.53;ReadPosRankSum=2.368;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:905,99,0 chrXVI 169696 . G C 661 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=13.77;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:81:694,81,0 chrXVI 170172 . A G 1456 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.10;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1489,165,0 chrXVI 170487 . T A 976 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.22;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1009,111,0 chrXVI 170630 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.37;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:808,93,0 chrXVI 170647 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=17.67;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:43:87:793,87,0 chrXVI 170670 . T A 804 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.530;QD=16.08;ReadPosRankSum=1.591;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:93:837,93,0 chrXVI 170718 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.69;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1175,135,0 chrXVI 170759 . A G 1206 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1239,144,0 chrXVI 171270 . A T 1612 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.635;QD=22.70;ReadPosRankSum=1.635;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1645,180,0 chrXVI 171525 . G A 1687 SnpCluster AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.54;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1720,195,0 chrXVI 171529 . A C 1733 SnpCluster AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.63;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1766,201,0 chrXVI 171534 . A G 1576 SnpCluster AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.33;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1609,180,0 chrXVI 171564 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=15.81;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1361,156,0 chrXVI 171612 . C T 1264 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.72;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1297,138,0 chrXVI 171708 . T C 1087 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.41;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1120,129,0 chrXVI 171729 . T C 829 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=17.64;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:862,99,0 chrXVI 171822 . G A 1674 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.67;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1707,186,0 chrXVI 172109 . C T 2202 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.18;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2235,243,0 chrXVI 172192 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1486;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.32;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1841,210,0 chrXVI 172402 . A G 1944 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.122;QD=19.64;ReadPosRankSum=1.662;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1977,222,0 chrXVI 172453 . T C 2140 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.11;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2173,240,0 chrXVI 172786 . T C 932 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:965,111,0 chrXVI 172925 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1143,129,0 chrXVI 173054 . A T 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.247;QD=21.37;ReadPosRankSum=1.670;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1230,132,0 chrXVI 173330 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.1367;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.85;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1621,183,0 chrXVI 173535 . T G 993 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.39;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1026,117,0 chrXVI 173680 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.93;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1833,201,0 chrXVI 173979 . C T 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.621;QD=18.40;ReadPosRankSum=0.621;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:1,52:55:96:1045,96,0 chrXVI 173981 . T C 979 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=18.47;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1012,117,0 chrXVI 174059 . G A 1308 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=16.99;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1341,147,0 chrXVI 174069 . T C 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.732;DP=89;Dels=0.00;FS=18.640;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=4.744;QD=17.79;ReadPosRankSum=5.009;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:11,77:89:99:1616,180,0 chrXVI 174555 . G A 706 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.67;MQ0=15;QD=13.84;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:6,45:51:81:739,81,0 chrXVI 174782 . T C 1927 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.469;QD=20.95;ReadPosRankSum=2.396;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1960,228,0 chrXVI 175312 . G A 1952 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.8536;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.44;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1985,219,0 chrXVI 175582 . A G 2083 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.47;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2116,237,0 chrXVI 175958 . C A 2783 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.00;SB=-1.492e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2816,306,0 chrXVI 175997 . C T 2258 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=103.4121;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.14;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2291,252,0 chrXVI 176099 . G A 1888 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.27;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1921,213,0 chrXVI 177590 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1761,195,0 chrXVI 177880 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.08;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1424,159,0 chrXVI 178076 . G A 1208 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.83;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1241,135,0 chrXVI 178167 . T C 1107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=3.321;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.896;QD=18.76;ReadPosRankSum=1.673;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1140,129,0 chrXVI 178232 . C G 1323 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.69;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1356,156,0 chrXVI 178256 . C G 1304 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.03;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:62:99:1337,153,0 chrXVI 178519 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.57;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1435,156,0 chrXVI 178571 . A G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.688;QD=24.09;ReadPosRankSum=1.643;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1912,210,0 chrXVI 179066 . G A 963 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0556;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:996,108,0 chrXVI 179572 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.28;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2350,258,0 chrXVI 180404 . T C 1255 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.64;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1288,150,0 chrXVI 180436 . A G 1212 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=61;Dels=0.00;FS=8.071;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.503;QD=19.87;ReadPosRankSum=2.286;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,58:61:99:1245,138,0 chrXVI 180828 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.38;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1197,141,0 chrXVI 181334 . G A 2544 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.20;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2577,282,0 chrXVI 181480 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.00;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1593,183,0 chrXVI 181552 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.48;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1142,126,0 chrXVI 181659 . C A 1822 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.44;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1855,201,0 chrXVI 181857 . T C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.952;QD=20.33;ReadPosRankSum=1.683;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1497,171,0 chrXVI 182353 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.15;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1096,120,0 chrXVI 182715 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.32;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1603,171,0 chrXVI 182784 . G A 774 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:807,87,0 chrXVI 182943 . C G 675 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.29;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:81:708,81,0 chrXVI 183101 . T C 683 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:78:716,78,0 chrXVI 183385 . A G 1244 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1277,150,0 chrXVI 183470 . C T 1210 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.51;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1243,135,0 chrXVI 183482 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.74;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1251,141,0 chrXVI 183510 . G A 1232 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.12;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1265,138,0 chrXVI 184605 . G A 2281 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.93;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2314,252,0 chrXVI 184681 . A T 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=108;Dels=0.00;FS=5.689;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.438;QD=19.15;ReadPosRankSum=2.934;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:3,105:108:99:2101,231,0 chrXVI 185261 . A G 2245 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=4.114;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.591;QD=22.68;ReadPosRankSum=1.697;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2278,258,0 chrXVI 185449 . T A 1007 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=13.43;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1040,111,0 chrXVI 185506 . G A 2638 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.98;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2671,288,0 chrXVI 186082 . A G 2386 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0823;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.88;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2419,276,0 chrXVI 186136 . C G 2087 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.68;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2120,240,0 chrXVI 186190 . A G 2322 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.30;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,106:109:99:2355,270,0 chrXVI 186214 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.85;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2204,240,0 chrXVI 186418 . G A 2052 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=19.00;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2085,234,0 chrXVI 186706 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.06;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2076,225,0 chrXVI 186736 . T C 1551 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.43;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1584,183,0 chrXVI 186760 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.45;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1786,192,0 chrXVI 186772 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=97;Dels=0.00;FS=7.669;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=-0.218;QD=15.53;ReadPosRankSum=2.398;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1539,177,0 chrXVI 186790 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=11.93;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1059,114,0 chrXVI 186811 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=11.59;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1041,117,0 chrXVI 186844 . A G 743 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=2.976;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-0.318;QD=11.26;ReadPosRankSum=2.226;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:87:776,87,0 chrXVI 186862 . T C 823 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=14.44;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:96:856,96,0 chrXVI 187240 . T C 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.154;QD=21.78;ReadPosRankSum=1.698;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:2233,258,0 chrXVI 187312 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=52.8752;MLEAC=2;MLEAF=1.00;MQ=62.02;MQ0=0;QD=17.39;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1859,222,0 chrXVI 187528 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.93;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1754,192,0 chrXVI 187673 . A T 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.8826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.397;QD=18.81;ReadPosRankSum=2.372;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:2,126:129:99:2459,267,0 chrXVI 187711 . G A 2933 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2966,321,0 chrXVI 188250 . A C 1267 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.501;QD=21.12;ReadPosRankSum=1.675;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1300,150,0 chrXVI 188889 . T C 1044 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2861;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.64;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1077,123,0 chrXVI 189099 . C T 1144 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.58;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1177,129,0 chrXVI 189266 . A G 908 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:941,108,0 chrXVI 189500 . T C 797 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.11;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:830,96,0 chrXVI 189526 . C G 787 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.40;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:48:93:820,93,0 chrXVI 189850 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.51;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1428,156,0 chrXVI 189891 . A C 1309 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.78;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1342,150,0 chrXVI 190020 . A G 1541 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.00;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1574,174,0 chrXVI 190367 . A T 2148 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.85;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2181,237,0 chrXVI 190515 . A G 1245 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1278,144,0 chrXVI 190713 . T C 1971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.693;QD=22.40;ReadPosRankSum=1.653;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:1,87:88:99:2004,228,0 chrXVI 190807 . G C 1387 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.49;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:75:99:1420,159,0 chrXVI 190868 . A G 1489 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.68;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1522,174,0 chrXVI 191121 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.61;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1435,159,0 chrXVI 191167 . T G 824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=4.367;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.141;QD=20.10;ReadPosRankSum=1.648;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:857,99,0 chrXVI 191183 . T C 763 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.17;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:93:796,93,0 chrXVI 191256 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.89;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:84:789,84,0 chrXVI 191290 . C T 784 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.1421;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.82;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:87:817,87,0 chrXVI 191540 . T C 523 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.92;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:556,63,0 chrXVI 191816 . C A 1545 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.76;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1578,177,0 chrXVI 191944 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.74;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1195,135,0 chrXVI 192044 . A G 2598 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.83;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2631,297,0 chrXVI 192260 . T C 2256 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.043;DP=115;Dels=0.00;FS=2.739;HaplotypeScore=9.0133;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.187;QD=19.62;ReadPosRankSum=2.364;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2289,258,0 chrXVI 192948 . C T 947 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.92;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:38:99:980,108,0 chrXVI 193046 . G C 1152 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1185,132,0 chrXVI 193187 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.42;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1438,156,0 chrXVI 193476 . G A 2153 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.15;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2186,234,0 chrXVI 193737 . G C 1137 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.30;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1170,132,0 chrXVI 193773 . A G 1319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.545;QD=17.59;ReadPosRankSum=1.685;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1352,153,0 chrXVI 193935 . A G 1251.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.868;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-1.091;QD=11.69;ReadPosRankSum=4.051;SB=-6.920e+02 GT:AD:DP:GQ:PL 0/1:37,70:107:99:1281,0,594 chrXVI 193968 . A C 1356 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=1;QD=16.34;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1389,162,0 chrXVI 193987 . C T 106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.706;DP=74;Dels=0.00;FS=6.427;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.02;MQ0=1;MQRankSum=-2.941;QD=1.43;ReadPosRankSum=-1.959;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:43,30:74:99:136,0,758 chrXVI 194019 . A G 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;DP=60;Dels=0.00;FS=16.035;HaplotypeScore=7.7500;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=2;MQRankSum=-2.093;QD=3.40;ReadPosRankSum=2.950;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:19,41:60:99:234,0,184 chrXVI 194050 . C T 216.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.152;DP=43;Dels=0.00;FS=1.227;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=1;MQRankSum=-0.359;QD=5.02;ReadPosRankSum=1.537;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:25,18:43:99:246,0,149 chrXVI 194061 . G A 195.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;DP=55;Dels=0.00;FS=1.141;HaplotypeScore=7.1505;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=1;MQRankSum=-1.014;QD=3.55;ReadPosRankSum=-0.702;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:35,18:55:99:225,0,343 chrXVI 194082 . A G 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742;DP=65;Dels=0.00;FS=1.426;HaplotypeScore=5.8098;MLEAC=1;MLEAF=0.500;MQ=52.02;MQ0=1;MQRankSum=-0.618;QD=0.22;ReadPosRankSum=-3.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,10:65:44:44,0,757 chrXVI 194152 . C T 1260 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1293,138,0 chrXVI 194653 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.28;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1459,165,0 chrXVI 194725 . A G 1212 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.24;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1245,144,0 chrXVI 194758 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.73;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1572,180,0 chrXVI 194832 . T C 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.391;QD=18.97;ReadPosRankSum=1.695;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1797,207,0 chrXVI 195006 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.05;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1612,174,0 chrXVI 195007 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.71;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1545,168,0 chrXVI 195093 . T C 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=2.920;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.347;QD=16.78;ReadPosRankSum=2.385;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1308,153,0 chrXVI 195109 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.67;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1233,138,0 chrXVI 195142 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.30;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1223,135,0 chrXVI 195253 . A G 1500 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.00;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1533,174,0 chrXVI 195558 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.16;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1374,150,0 chrXVI 195564 . C A 1179 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.84;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1212,138,0 chrXVI 195862 . C G 2028 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.86;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2061,231,0 chrXVI 195879 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.87;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1849,204,0 chrXVI 196496 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.9236;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.85;SB=-1.192e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2109,228,0 chrXVI 196580 . A G 867 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=58;Dels=0.00;FS=2.510;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.229;QD=14.95;ReadPosRankSum=2.809;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:3,55:58:99:900,105,0 chrXVI 196610 . T C 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.632;QD=19.62;ReadPosRankSum=1.677;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1269,144,0 chrXVI 196727 . A T 1736 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.17;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1769,195,0 chrXVI 197168 . A G 1926 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.999;QD=18.52;ReadPosRankSum=1.666;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:1959,228,0 chrXVI 197348 . T A 2048 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.79;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2081,228,0 chrXVI 197471 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.338;QD=17.33;ReadPosRankSum=1.605;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1454,162,0 chrXVI 197495 . A G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.881;QD=16.14;ReadPosRankSum=2.322;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1276,147,0 chrXVI 197642 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.31;SB=-1.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1595,171,0 chrXVI 197759 . G A 321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;DP=25;Dels=0.00;FS=2.673;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.408;QD=12.84;ReadPosRankSum=1.001;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:4,21:25:39:354,39,0 chrXVI 197765 . A G 333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.555;DP=23;Dels=0.00;FS=8.953;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.527;QD=14.48;ReadPosRankSum=2.312;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:4,19:23:42:366,42,0 chrXVI 198072 . G A 1035 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=25.24;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1068,114,0 chrXVI 198304 . A T 1502 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.76;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1535,165,0 chrXVI 198355 . A T 1597 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.84;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1630,180,0 chrXVI 198405 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=18.83;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1596,180,0 chrXVI 198409 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.217;QD=18.89;ReadPosRankSum=1.689;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1544,177,0 chrXVI 198637 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.45;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1453,165,0 chrXVI 198653 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7570;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=16.97;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1357,144,0 chrXVI 198810 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.75;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1169,132,0 chrXVI 198866 . T A 1407 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.82;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1440,162,0 chrXVI 199138 . T C 705 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:738,84,0 chrXVI 199177 . G A 827 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.80;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:860,96,0 chrXVI 199210 . C A 758 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.44;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:791,87,0 chrXVI 199239 . C T 762 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.59;SB=-8.501e+01 GT:AD:DP:GQ:PL 1/1:0,36:37:84:795,84,0 chrXVI 199516 . A G 2279 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=25.04;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2312,258,0 chrXVI 199576 . T A 1285 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.669;QD=23.36;ReadPosRankSum=1.669;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1318,147,0 chrXVI 199685 . A G 811 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.27;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:844,93,0 chrXVI 199707 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=14.29;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:81:719,81,0 chrXVI 199717 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=15.08;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:832,93,0 chrXVI 199801 . T C 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=3.188;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.935;QD=18.75;ReadPosRankSum=1.663;SB=-1.235e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:1927,219,0 chrXVI 199864 . A G 1762 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.45;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1795,207,0 chrXVI 199875 . G A 1730 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.30;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1763,189,0 chrXVI 199884 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.67;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1823,204,0 chrXVI 200053 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.06;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1534,165,0 chrXVI 200068 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.20;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1461,168,0 chrXVI 200221 . T C 2481 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.03;SB=-1.445e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2514,288,0 chrXVI 200253 . A G 2324 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.21;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2357,261,0 chrXVI 200515 . A G 1510 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.133;QD=19.36;ReadPosRankSum=1.688;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1543,174,0 chrXVI 200534 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.79;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1577,168,0 chrXVI 200545 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.943;QD=18.99;ReadPosRankSum=1.688;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1533,177,0 chrXVI 200605 . C G 1595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.225;QD=19.22;ReadPosRankSum=0.634;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1628,180,0 chrXVI 200631 . A G 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=1.685;QD=17.51;ReadPosRankSum=1.685;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1329,147,0 chrXVI 200650 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.44;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1250,141,0 chrXVI 200671 . A G 1099 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.28;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1132,129,0 chrXVI 200894 . C T 1290 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.55;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1323,144,0 chrXVI 200983 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.11;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1335,144,0 chrXVI 201034 . C T 867 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.08;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:900,99,0 chrXVI 201192 . A G 781 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=15.94;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:814,93,0 chrXVI 201196 . T C 798 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=53;Dels=0.02;FS=2.651;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.099;QD=15.06;ReadPosRankSum=2.865;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:3,49:52:96:831,96,0 chrXVI 201198 . C T 807 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=4.372;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;MQRankSum=0.067;QD=15.52;ReadPosRankSum=1.666;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:93:840,93,0 chrXVI 201262 . A T 1017 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.53;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1050,120,0 chrXVI 202708 . T C 712 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.95;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:84:745,84,0 chrXVI 202791 . C T 631 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.35;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:664,72,0 chrXVI 202808 . C T 463 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=15.97;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:496,54,0 chrXVI 202900 . C T 804 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:837,90,0 chrXVI 203409 . T A 2467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=102;Dels=0.00;FS=5.166;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.384;QD=24.19;ReadPosRankSum=3.369;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:4,98:102:99:2500,276,0 chrXVI 203462 . T C 2698 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.333;QD=24.75;ReadPosRankSum=2.290;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:2,106:109:99:2731,309,0 chrXVI 203786 . G A 3066 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=10.1907;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.00;SB=-1.883e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3099,336,0 chrXVI 203880 . C A 2650 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.3356;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.03;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,125:126:99:2683,294,0 chrXVI 204396 . A G 2362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.278;QD=20.90;ReadPosRankSum=1.701;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:1,111:113:99:2395,276,0 chrXVI 204653 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2121,231,0 chrXVI 204722 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1364,147,0 chrXVI 204785 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.51;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1961,210,0 chrXVI 204854 . T G 1934 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0277;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.94;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1967,216,0 chrXVI 205023 . C A 2260 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.8723;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.83;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2293,258,0 chrXVI 205415 . C G 2218 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.74;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,123:125:99:2251,261,0 chrXVI 206195 . T G 1064 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1097,123,0 chrXVI 206288 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.73;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1277,144,0 chrXVI 206683 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.66;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1110,126,0 chrXVI 207823 . A T 2049 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=2.905;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.084;QD=19.89;ReadPosRankSum=2.378;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:2,101:103:99:2082,231,0 chrXVI 208076 . C T 2001 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2034,219,0 chrXVI 208816 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.59;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1706,183,0 chrXVI 208843 . T C 1460 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.22;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1493,165,0 chrXVI 209844 . G A 1074 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.37;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1107,120,0 chrXVI 209982 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.94;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1369,150,0 chrXVI 210131 . C T 2057 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.09;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2090,231,0 chrXVI 210171 . C T 2107 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.437;QD=22.41;ReadPosRankSum=0.553;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:2140,240,0 chrXVI 210288 . T G 1066 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.523;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.153;QD=15.68;ReadPosRankSum=1.579;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1099,123,0 chrXVI 210299 . C T 1231 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.483;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.542;QD=16.86;ReadPosRankSum=1.400;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1264,135,0 chrXVI 210604 . A G 1523 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=-1.404;QD=20.58;ReadPosRankSum=1.685;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1556,174,0 chrXVI 210669 . A G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=3.015;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.651;QD=21.11;ReadPosRankSum=2.339;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:2,87:89:99:1912,216,0 chrXVI 210711 . T A 1835 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.62;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1868,210,0 chrXVI 210762 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.38;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1810,195,0 chrXVI 210832 . C T 1410 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.38;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1443,159,0 chrXVI 210923 . T A 968 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.36;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1001,108,0 chrXVI 210964 . A T 1021 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.91;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1054,120,0 chrXVI 210983 . C T 926 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.81;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:959,108,0 chrXVI 211043 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=15.38;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:925,102,0 chrXVI 211065 . C G 825 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.84;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:858,93,0 chrXVI 211075 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=17.16;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:977,105,0 chrXVI 211162 . T C 995 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.13;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1028,117,0 chrXVI 211433 . C G 1155 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=22.65;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1188,138,0 chrXVI 211577 . T A 268 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.40;SB=-1.084e-02 GT:AD:DP:GQ:PL 1/1:0,20:20:33:301,33,0 chrXVI 211951 . T A 131.13 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=2.73;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,48:48:18:164,18,0 chrXVI 211965 . A C 119.13 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=21.8443;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=3.05;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:0,39:39:18:152,18,0 chrXVI 212295 . C A 1557 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=19.22;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1590,174,0 chrXVI 212370 . A G 2318 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.07;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2351,270,0 chrXVI 212526 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.65;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1212,141,0 chrXVI 212736 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=16.73;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:953,111,0 chrXVI 212773 . G A 1387 filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0500;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1420,162,0 chrXVI 213150 . C T 2105 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.48;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2138,231,0 chrXVI 213381 . T C 2290 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.20;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2323,261,0 chrXVI 213597 . T A 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.074;QD=19.60;ReadPosRankSum=1.695;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1915,219,0 chrXVI 214028 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.97;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1396,159,0 chrXVI 214333 . G A 979 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.25;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1012,108,0 chrXVI 214358 . A C 955 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.22;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:988,114,0 chrXVI 214684 . T G 1626 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.39;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1659,183,0 chrXVI 214724 . C T 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.439;QD=19.99;ReadPosRankSum=0.317;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1512,165,0 chrXVI 214866 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.45;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1453,168,0 chrXVI 214888 . T A 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0170;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.167;QD=20.09;ReadPosRankSum=2.267;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,80:82:99:1680,183,0 chrXVI 214963 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.45;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2119,243,0 chrXVI 215112 . A C 899 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=15.50;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:932,105,0 chrXVI 215126 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=16.05;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:932,108,0 chrXVI 215183 . T C 702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=2.973;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=-1.643;QD=15.26;ReadPosRankSum=2.343;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:2,44:46:81:735,81,0 chrXVI 215186 . T C 687 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=14.02;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:81:720,81,0 chrXVI 215378 . C A 814 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=16.28;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:93:847,93,0 chrXVI 215587 . G C 899 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.13;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:932,105,0 chrXVI 215619 . T A 766 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.81;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:90:799,90,0 chrXVI 215715 . T G 362 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=10.65;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,33:34:45:395,45,0 chrXVI 215749 . G A 542 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=17.48;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:575,66,0 chrXVI 215778 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.81;SB=-1.710e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:890,96,0 chrXVI 215926 . A C 1316 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.9117;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.56;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1349,156,0 chrXVI 216015 . A G 1035 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.53;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1068,120,0 chrXVI 216037 . T C 1020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=0.728;QD=18.21;ReadPosRankSum=2.362;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:99:1053,123,0 chrXVI 216100 . G A 1550 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.85;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1583,171,0 chrXVI 216582 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.38;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1926,210,0 chrXVI 216683 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.23;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1567,183,0 chrXVI 216714 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.19;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1557,168,0 chrXVI 216780 . T C 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=50;Dels=0.00;FS=9.369;HaplotypeScore=9.0833;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.076;QD=14.08;ReadPosRankSum=1.541;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:2,47:50:81:737,81,0 chrXVI 216822 . T A 1203 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.74;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1236,135,0 chrXVI 217014 . T C 1526 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=81;Dels=0.00;FS=6.168;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.013;QD=18.84;ReadPosRankSum=2.863;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1559,180,0 chrXVI 217016 . A G 1518 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=3.4437;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.064;QD=18.74;ReadPosRankSum=1.689;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1551,177,0 chrXVI 217064 . T C 1242 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.562;QD=15.72;ReadPosRankSum=1.687;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:1,76:79:99:1275,147,0 chrXVI 217075 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=15.44;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1284,135,0 chrXVI 217188 . T C 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.641;QD=22.03;ReadPosRankSum=1.550;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1707,192,0 chrXVI 217218 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.87;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1305,153,0 chrXVI 217275 . A C 2131 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1436;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2164,240,0 chrXVI 217425 . T A 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.666;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=-0.793;QD=19.21;ReadPosRankSum=1.667;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2089,222,0 chrXVI 217557 . A C 1898 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2219;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.61;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1931,225,0 chrXVI 217929 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.35;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1559,183,0 chrXVI 218115 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.51;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1294,141,0 chrXVI 218188 . T C 1052 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.63;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1085,120,0 chrXVI 218294 . G C 1330 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.97;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1363,153,0 chrXVI 218530 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.31;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1346,153,0 chrXVI 218554 . C G 1240 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.79;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1273,141,0 chrXVI 218575 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.33;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1270,144,0 chrXVI 218810 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.99;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2216,243,0 chrXVI 219029 . C T 2141 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.63;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2174,237,0 chrXVI 219131 . G A 2285 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.16;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2318,252,0 chrXVI 219314 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.85;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1513,165,0 chrXVI 219860 . T C 2209 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=120;Dels=0.00;FS=16.005;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.517;QD=18.41;ReadPosRankSum=3.702;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:5,114:120:99:2242,261,0 chrXVI 220130 . T A 2281 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6875;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.66;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2314,249,0 chrXVI 220163 . T C 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=3.590;HaplotypeScore=8.5396;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.516;QD=19.19;ReadPosRankSum=1.670;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:2182,243,0 chrXVI 221029 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.96;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1342,159,0 chrXVI 221076 . T C 1182 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.49;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1215,141,0 chrXVI 221149 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.67;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1008,111,0 chrXVI 221325 . A G 1121 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-1.307;QD=19.33;ReadPosRankSum=1.672;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1154,129,0 chrXVI 221327 . A T 1143 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.71;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1176,129,0 chrXVI 221382 . C T 998 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.36;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1031,111,0 chrXVI 221495 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:901,96,0 chrXVI 221729 . T A 1096 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.30;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1129,123,0 chrXVI 221764 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.20;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1365,147,0 chrXVI 222062 . A G 1124 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.84;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1157,132,0 chrXVI 222162 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.60;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1679,180,0 chrXVI 222346 . G C 982 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1015,117,0 chrXVI 222390 . T C 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=74;Dels=0.00;FS=2.693;HaplotypeScore=8.8589;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.117;QD=17.15;ReadPosRankSum=2.383;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1302,147,0 chrXVI 222598 . G A 2126 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5993;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.38;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2159,237,0 chrXVI 222732 . C A 2135 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.14;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2168,240,0 chrXVI 222796 . G T 2434 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.28;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2467,270,0 chrXVI 222840 . A G 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=1.053;QD=16.39;ReadPosRankSum=1.698;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,101:105:99:1754,198,0 chrXVI 222846 . G A 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.232;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2935;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.339;QD=16.69;ReadPosRankSum=1.661;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1652,177,0 chrXVI 222884 . A T 2242 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=20.02;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2275,243,0 chrXVI 222905 . G A 2232 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.86;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2265,252,0 chrXVI 222908 . T G 2232 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.30;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2265,252,0 chrXVI 222957 . G C 2005 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.9090;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.43;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,113:115:99:2038,231,0 chrXVI 223706 . C T 2104 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.38;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2137,231,0 chrXVI 224305 . T G 1317 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.32;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1350,150,0 chrXVI 224569 . G A 2450 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2483,267,0 chrXVI 224815 . T C 2194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.742;QD=22.39;ReadPosRankSum=1.697;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2227,258,0 chrXVI 224848 . A G 2578 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5674;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.48;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2611,297,0 chrXVI 225065 . G A 1859 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.36;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1892,204,0 chrXVI 225172 . C T 2460 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.07;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2493,279,0 chrXVI 225206 . T C 2352 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.93;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2385,273,0 chrXVI 225452 . G T 779 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=11.80;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:87:812,87,0 chrXVI 225486 . T A 1138 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.78;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1171,126,0 chrXVI 225550 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.09;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1383,162,0 chrXVI 225805 . C A 1492 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.62;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1525,165,0 chrXVI 225823 . T C 1566 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-0.373;QD=19.82;ReadPosRankSum=1.688;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1599,183,0 chrXVI 225893 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.08;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1645,183,0 chrXVI 226103 . G A 3217.04 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=144;Dels=0.00;FS=4.771;HaplotypeScore=9.8199;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.995;QD=22.34;ReadPosRankSum=0.504;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:1,142:144:99:3250,357,0 chrXVI 226571 . C A 1950 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=15.12;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:1983,216,0 chrXVI 226573 . A C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=128;Dels=0.00;FS=12.688;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.302;QD=13.24;ReadPosRankSum=3.388;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:4,121:128:99:1728,198,0 chrXVI 226604 . C T 2091 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.18;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2124,231,0 chrXVI 226631 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=16.62;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1861,204,0 chrXVI 226841 . C G 1977 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=16.61;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2010,231,0 chrXVI 227051 . A G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=15.3177;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.385;QD=17.74;ReadPosRankSum=1.655;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1630,186,0 chrXVI 227828 . A G 1337 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.96;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1370,162,0 chrXVI 227850 . G C 1205 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.75;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1238,141,0 chrXVI 227861 . G A 1168 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.43;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1201,132,0 chrXVI 227925 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.84;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1514,168,0 chrXVI 228950 . G A 3027 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.76;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,129:133:99:3060,330,0 chrXVI 229246 . A C 1079 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.93;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1112,129,0 chrXVI 229636 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.81;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1226,141,0 chrXVI 229768 . C T 1041 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.41;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1074,117,0 chrXVI 229960 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.60;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1205,141,0 chrXVI 230063 . G C 1082 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.67;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1115,126,0 chrXVI 230335 . A G 862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.301;QD=18.74;ReadPosRankSum=1.657;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:895,99,0 chrXVI 230687 . T A 831 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.77;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:864,90,0 chrXVI 230809 . G A 638 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=13.87;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:75:671,75,0 chrXVI 231052 . T C 1380 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.483;QD=21.90;ReadPosRankSum=1.675;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1413,156,0 chrXVI 231179 . T G 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693;DP=89;Dels=0.00;FS=4.531;HaplotypeScore=8.7414;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.496;QD=21.87;ReadPosRankSum=1.575;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1979,208,0 chrXVI 231457 . A G 1516 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.32;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1549,174,0 chrXVI 231473 . G C 1672 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.90;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1705,192,0 chrXVI 231483 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.98;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1671,183,0 chrXVI 232653 . G A 2080 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2113,231,0 chrXVI 232790 . G C 1662 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=17.68;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1695,198,0 chrXVI 232961 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.79;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1367,156,0 chrXVI 233007 . G A 1578 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.56;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1611,177,0 chrXVI 233289 . T C 753 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.51;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:87:786,87,0 chrXVI 233537 . T C 1107 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.14;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1140,132,0 chrXVI 233620 . T C 1571 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.699;QD=22.77;ReadPosRankSum=2.379;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1604,186,0 chrXVI 233712 . T C 1596 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1629,186,0 chrXVI 233829 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.31;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1885,207,0 chrXVI 233841 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.93;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1448,159,0 chrXVI 234054 . G A 1825 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1858,204,0 chrXVI 234171 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.08;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1365,150,0 chrXVI 234188 . G A 1262 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.56;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1295,141,0 chrXVI 234189 . C A 1262 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.56;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1295,141,0 chrXVI 234285 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.89;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1307,144,0 chrXVI 234333 . C T 885 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.06;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:918,99,0 chrXVI 234336 . A T 817 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.67;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:850,96,0 chrXVI 234888 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.44;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1238,138,0 chrXVI 235149 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.33;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1172,135,0 chrXVI 235155 . G A 1146 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=22.04;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1179,129,0 chrXVI 235215 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.93;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:950,111,0 chrXVI 235371 . C T 1462 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.89;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1495,162,0 chrXVI 235830 . A C 1773 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.70;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1806,201,0 chrXVI 235850 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.27;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1458,165,0 chrXVI 235895 . T C 1541 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=93;Dels=0.00;FS=3.058;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.790;QD=16.57;ReadPosRankSum=2.369;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1574,180,0 chrXVI 235980 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.14;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1507,162,0 chrXVI 236129 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=16.54;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1588,171,0 chrXVI 236142 . C A 1753 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.26;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1786,198,0 chrXVI 236366 . A C 1375 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.84;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1408,165,0 chrXVI 236391 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.48;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1773,192,0 chrXVI 236505 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.01;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1614,186,0 chrXVI 236868 . A T 2443 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2476,270,0 chrXVI 237235 . G A 2667 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.04;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2700,294,0 chrXVI 237316 . T C 1260 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.32;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1293,150,0 chrXVI 237387 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.62;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1395,153,0 chrXVI 237675 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.45;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1839,204,0 chrXVI 237745 . T C 1751 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.32;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1784,201,0 chrXVI 238051 . A G 1418 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9889;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=17.51;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1451,162,0 chrXVI 238082 . C T 1476 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.45;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:80:99:1509,162,0 chrXVI 238111 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=18.36;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1520,174,0 chrXVI 238515 . G A 2011 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.66;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2044,219,0 chrXVI 238556 . G A 1131 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.24;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1164,132,0 chrXVI 238578 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.65;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1437,156,0 chrXVI 238659 . T G 2092 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.478;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.919;QD=21.13;ReadPosRankSum=1.626;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2125,243,0 chrXVI 238781 . T C 1609 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.17;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1642,186,0 chrXVI 238845 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=5.740;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.686;QD=18.70;ReadPosRankSum=1.686;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1454,165,0 chrXVI 238991 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.62;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1053,123,0 chrXVI 239629 . A T 1172 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.92;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1205,132,0 chrXVI 239744 . G A 1305 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.75;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1338,150,0 chrXVI 240133 . C G 1529 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6161;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.95;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1562,177,0 chrXVI 240215 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.26;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1883,201,0 chrXVI 240445 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.44;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1608,171,0 chrXVI 240469 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=16.69;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1502,168,0 chrXVI 240478 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.96;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1581,171,0 chrXVI 240681 . C G 1529 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.18;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1562,180,0 chrXVI 240946 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.522;QD=20.23;ReadPosRankSum=1.690;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1712,198,0 chrXVI 241053 . G C 1595 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4170;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.76;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1628,186,0 chrXVI 241174 . A C 2655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=3.046;HaplotypeScore=9.4518;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.444;QD=21.76;ReadPosRankSum=1.703;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,120:122:99:2688,303,0 chrXVI 241467 . C T 2297 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.27;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2330,258,0 chrXVI 241547 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.95;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2383,258,0 chrXVI 241650 . T C 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=5.682;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.562;QD=17.55;ReadPosRankSum=1.685;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1349,153,0 chrXVI 241678 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.79;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:1812,204,0 chrXVI 241702 . A G 2270 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.321;QD=21.02;ReadPosRankSum=1.668;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,107:108:99:2303,258,0 chrXVI 242099 . A G 1979 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.251;QD=18.16;ReadPosRankSum=1.315;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2012,240,0 chrXVI 242227 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.00;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2511,273,0 chrXVI 242449 . A G 1754 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0436;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.66;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,91:94:99:1787,204,0 chrXVI 242716 . A T 2402 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.975;DP=115;Dels=0.00;FS=2.887;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.615;QD=20.89;ReadPosRankSum=2.407;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,113:115:99:2435,270,0 chrXVI 242761 . G A 2426 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.78;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2459,267,0 chrXVI 242816 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.08;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1382,150,0 chrXVI 243021 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.66;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1190,138,0 chrXVI 243196 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.26;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:78:99:1769,192,0 chrXVI 244301 . G A 826 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:93:859,93,0 chrXVI 244502 . A G 1305 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.10;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1338,147,0 chrXVI 244562 . T C 1162 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=25.26;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1195,132,0 chrXVI 244633 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.57;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1284,144,0 chrXVI 244724 . A G 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.732;QD=23.04;ReadPosRankSum=1.683;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1646,189,0 chrXVI 244785 . G A 2092 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.71;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2125,240,0 chrXVI 244939 . T C 2008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=1.137;QD=20.28;ReadPosRankSum=1.697;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2041,231,0 chrXVI 244964 . C T 1696 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.84;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1729,195,0 chrXVI 245159 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.74;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1612,183,0 chrXVI 245345 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.46;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1731,192,0 chrXVI 245420 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1310,141,0 chrXVI 245609 . A T 1657 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4618;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.49;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1690,186,0 chrXVI 245683 . A G 1333 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.20;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1366,156,0 chrXVI 245982 . A T 2011 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2044,222,0 chrXVI 246320 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.6223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-1.158e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2207,243,0 chrXVI 246509 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.14;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1699,186,0 chrXVI 246539 . A T 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=71;Dels=0.00;FS=5.891;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.129;QD=18.35;ReadPosRankSum=2.701;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1336,144,0 chrXVI 246558 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.04;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1516,165,0 chrXVI 247112 . A C 1199 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.80;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1232,144,0 chrXVI 247153 . C A 1321 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.78;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1354,147,0 chrXVI 247661 . C T 1379 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.03;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1412,159,0 chrXVI 247847 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1718,195,0 chrXVI 247931 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.11;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1943,210,0 chrXVI 248123 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=15.13;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1380,150,0 chrXVI 248992 . C G 1995 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.17;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2028,237,0 chrXVI 249056 . G A 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.0680;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.548;QD=18.62;ReadPosRankSum=0.590;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,94:96:99:1821,177,0 chrXVI 249257 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.59;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1907,222,0 chrXVI 249494 . C T 2507 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.3533;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.25;SB=-1.470e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2540,276,0 chrXVI 249821 . A G 1648 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3195;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.62;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1681,189,0 chrXVI 250784 . G A 773 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:87:806,87,0 chrXVI 251068 . T C 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.1242;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.999;QD=19.52;ReadPosRankSum=1.651;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,84:88:99:1751,195,0 chrXVI 251210 . A T 1478 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.71;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1511,171,0 chrXVI 251405 . C A 1193 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.34;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1226,138,0 chrXVI 251492 . C G 2334 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.95;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2367,267,0 chrXVI 251559 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1498;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.95;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1856,204,0 chrXVI 251641 . G A 2677 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.69;SB=-1.332e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2710,291,0 chrXVI 252004 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.102;DP=99;Dels=0.00;FS=3.044;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.734;QD=18.64;ReadPosRankSum=2.375;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1878,213,0 chrXVI 252117 . G A 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.577;QD=23.21;ReadPosRankSum=0.840;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:1611,152,0 chrXVI 252265 . A T 132.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;DP=63;Dels=0.00;FS=7.122;HaplotypeScore=150.4506;MLEAC=1;MLEAF=0.500;MQ=34.67;MQ0=0;MQRankSum=1.967;QD=2.10;ReadPosRankSum=-0.828;SB=-2.650e+02 GT:AD:DP:GQ:PL 0/1:34,29:63:65:162,0,65 chrXVI 252274 . T A 126.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;DP=72;Dels=0.00;FS=14.465;HaplotypeScore=119.9998;MLEAC=1;MLEAF=0.500;MQ=31.68;MQ0=0;MQRankSum=1.511;QD=1.75;ReadPosRankSum=0.929;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:51,21:72:97:156,0,97 chrXVI 252280 . T A 91.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;DP=75;Dels=0.00;FS=5.412;HaplotypeScore=59.4368;MLEAC=1;MLEAF=0.500;MQ=31.58;MQ0=0;MQRankSum=-1.322;QD=1.21;ReadPosRankSum=1.225;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:23,52:75:99:121,0,151 chrXVI 252283 . T A 119.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DP=73;Dels=0.00;FS=10.688;HaplotypeScore=29.6275;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=-0.193;QD=1.63;ReadPosRankSum=0.753;SB=-3.920e+02 GT:AD:DP:GQ:PL 0/1:16,57:73:76:149,0,76 chrXVI 252286 . A T 46.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;DP=79;Dels=0.00;FS=4.638;HaplotypeScore=52.9780;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=-0.578;QD=0.58;ReadPosRankSum=-0.088;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:66,13:79:76:76,0,149 chrXVI 252292 . T A 16.11 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=83;Dels=0.00;FS=14.114;HaplotypeScore=56.4315;MLEAC=1;MLEAF=0.500;MQ=30.80;MQ0=0;MQRankSum=-0.689;QD=0.19;ReadPosRankSum=0.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,12:83:46:46,0,156 chrXVI 252362 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=12.84;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1484,162,0 chrXVI 252372 . T A 1387 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=12.17;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1420,153,0 chrXVI 252490 . A G 1800 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.732;QD=19.35;ReadPosRankSum=1.695;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1833,213,0 chrXVI 252501 . A G 1696 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=93;Dels=0.00;FS=3.774;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.099;QD=18.24;ReadPosRankSum=1.583;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1729,198,0 chrXVI 252578 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.68;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2069,237,0 chrXVI 252618 . C T 2837 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5983;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.98;SB=-1.408e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2870,315,0 chrXVI 252946 . G T 1736 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.87;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1769,192,0 chrXVI 252991 . A G 2019 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7075;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.41;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2052,234,0 chrXVI 253090 . G A 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.4121;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-0.697;QD=19.38;ReadPosRankSum=-0.816;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1719,189,0 chrXVI 253113 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.10;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1752,189,0 chrXVI 253164 . T A 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=6.232;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.371;QD=16.71;ReadPosRankSum=1.691;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1437,156,0 chrXVI 253233 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=-1.732;QD=18.40;ReadPosRankSum=1.621;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:65:99:1229,141,0 chrXVI 253285 . T A 728 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.627;QD=15.49;ReadPosRankSum=1.659;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:87:761,87,0 chrXVI 253286 . T C 761 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.53;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:90:794,90,0 chrXVI 253297 . G A 866 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=15.46;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:899,99,0 chrXVI 253375 . C T 1043 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.31;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1076,120,0 chrXVI 253447 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.19;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1305,144,0 chrXVI 253655 . A G 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=5.019;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.155;QD=20.47;ReadPosRankSum=1.668;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1159,129,0 chrXVI 253677 . T A 1257 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.424;QD=18.76;ReadPosRankSum=2.303;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1290,138,0 chrXVI 253690 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=15.57;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1154,132,0 chrXVI 253705 . T C 1262 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.53;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1295,144,0 chrXVI 253842 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.23;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1379,162,0 chrXVI 253892 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.08;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1425,162,0 chrXVI 253909 . A T 1437 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.11;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1470,165,0 chrXVI 254020 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.08;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1931,210,0 chrXVI 254053 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=14.7669;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=18.87;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1996,216,0 chrXVI 254101 . T C 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.753;DP=104;Dels=0.00;FS=8.119;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.198;QD=18.12;ReadPosRankSum=3.723;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:5,99:104:99:1917,225,0 chrXVI 254117 . G A 1958 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.05;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1991,222,0 chrXVI 254147 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.56;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:90:99:1883,213,0 chrXVI 254530 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.65;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1334,147,0 chrXVI 254741 . C T 984 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=19.29;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1017,114,0 chrXVI 254772 . A T 912 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=17.54;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:945,102,0 chrXVI 254778 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=16.46;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:955,102,0 chrXVI 254813 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=16.19;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1134,126,0 chrXVI 255611 . C T 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1730,189,0 chrXVI 255696 . A G 952 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:49:99:985,111,0 chrXVI 256359 . T G 826 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.65;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:859,99,0 chrXVI 256672 . G A 804 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:837,90,0 chrXVI 257654 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.58;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1738,204,0 chrXVI 257780 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1564,171,0 chrXVI 257972 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=22.64;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2433,264,0 chrXVI 258236 . C T 2777 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.56;SB=-1.584e+03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2810,312,0 chrXVI 258271 . T C 2123 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=18.15;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2156,246,0 chrXVI 258272 . A T 2222 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=18.99;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2255,246,0 chrXVI 258329 . G A 1166 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=11.21;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1199,129,0 chrXVI 258332 . A T 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;MQRankSum=-1.664;QD=11.15;ReadPosRankSum=1.698;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1170,129,0 chrXVI 258347 . C T 1128 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=11.06;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1161,126,0 chrXVI 258362 . A G 1181 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.51;MQ0=0;MQRankSum=-0.257;QD=11.69;ReadPosRankSum=1.698;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1214,138,0 chrXVI 258364 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=12.26;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1284,138,0 chrXVI 258374 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.97;MQ0=0;QD=10.71;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1232,132,0 chrXVI 258410 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=15.43;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1591,171,0 chrXVI 258521 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.582;QD=20.06;ReadPosRankSum=1.694;SB=-1.210e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1899,213,0 chrXVI 258598 . T A 1818 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9643;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.36;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1851,201,0 chrXVI 258671 . A G 1897 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6846;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.80;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1930,216,0 chrXVI 258970 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.52;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1859,201,0 chrXVI 258984 . C T 1838 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.15;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1871,204,0 chrXVI 259360 . T C 657 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=15.64;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:690,78,0 chrXVI 259417 . G T 582 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=14.55;SB=-1.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:69:615,69,0 chrXVI 259430 . C G 580 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.50;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:613,72,0 chrXVI 259987 . C A 1964 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.84;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1997,216,0 chrXVI 260089 . G A 2748 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.5203;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.98;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2781,309,0 chrXVI 260252 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.11;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1963,213,0 chrXVI 260871 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3142;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,66:69:99:1378,156,0 chrXVI 261137 . C G 755 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:788,90,0 chrXVI 261357 . T A 546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516;DP=32;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.625;QD=17.06;ReadPosRankSum=1.300;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:63:579,63,0 chrXVI 261906 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.01;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1662,180,0 chrXVI 262213 . A G 1368 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.73;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1401,162,0 chrXVI 262228 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.04;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1118,123,0 chrXVI 262452 . T G 1237 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.67;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1270,147,0 chrXVI 262502 . T G 1573 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.18;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1606,186,0 chrXVI 262681 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.46;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1590,186,0 chrXVI 263119 . A G 2585 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.0206;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.19;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2618,294,0 chrXVI 263263 . A G 2044 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=14.5184;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.47;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,97:105:99:2077,234,0 chrXVI 263635 . C A 1814 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.09;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1847,201,0 chrXVI 263656 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.549;QD=17.72;ReadPosRankSum=1.690;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1486,174,0 chrXVI 263710 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.45;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1751,195,0 chrXVI 263733 . A T 1702 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.11;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1735,186,0 chrXVI 263788 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.05;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1874,207,0 chrXVI 263800 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=15.59;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1842,204,0 chrXVI 263823 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.27;SB=-1.514e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:1986,216,0 chrXVI 263857 . A G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-1.422;QD=14.64;ReadPosRankSum=1.704;SB=-1.262e+03 GT:AD:DP:GQ:PL 1/1:1,122:123:99:1834,213,0 chrXVI 263938 . T C 1117 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=15.30;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1150,132,0 chrXVI 264124 . A G 1479 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=22.07;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1512,171,0 chrXVI 264248 . T A 1884 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=2.892;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.228;QD=20.48;ReadPosRankSum=2.396;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:2,90:92:99:1917,213,0 chrXVI 264333 . A T 1644 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.55;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1677,183,0 chrXVI 264524 . A C 1400 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=13.59;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1433,159,0 chrXVI 264530 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=12.77;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1425,156,0 chrXVI 264574 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=14.97;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2084,225,0 chrXVI 264576 . A T 2035 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=14.75;SB=-1.392e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2068,225,0 chrXVI 264609 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=19.08;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2304,264,0 chrXVI 264641 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6594;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.96;SB=-1.145e+03 GT:AD:DP:GQ:PL 1/1:0,125:127:99:2568,279,0 chrXVI 264690 . A G 1932 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.00;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1965,228,0 chrXVI 264726 . T C 1399 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.2514;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.65;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1432,165,0 chrXVI 264745 . A G 620 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0603;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.365;QD=7.95;ReadPosRankSum=1.687;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,75:78:75:653,75,0 chrXVI 264839 . A C 999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=0.924;QD=11.10;ReadPosRankSum=1.655;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1032,117,0 chrXVI 264882 . T A 1911 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=15.79;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:1944,210,0 chrXVI 264964 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.31;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2328,252,0 chrXVI 264998 . G T 1722 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.56;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1755,192,0 chrXVI 265000 . A T 1567 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.857;QD=15.51;ReadPosRankSum=1.592;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1600,177,0 chrXVI 265144 . T C 891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=0.621;QD=16.81;ReadPosRankSum=1.667;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:924,108,0 chrXVI 265153 . C T 953 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.33;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:986,105,0 chrXVI 265753 . T C 2396 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.78;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2429,276,0 chrXVI 266023 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.66;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1603,174,0 chrXVI 266276 . G A 956 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=14.48;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:989,111,0 chrXVI 266771 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.7076;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.12;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1317,147,0 chrXVI 267131 . G A 773 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.1075;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=14.05;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:90:806,90,0 chrXVI 267298 . C T 3534.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.72;SB=-1.409e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3534,378,0 chrXVI 267632 . A T 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.139;QD=18.72;ReadPosRankSum=1.656;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:1,136:137:99:2597,288,0 chrXVI 267655 . G A 2870 PASS AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.39;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,148:148:99:2903,318,0 chrXVI 267803 . C T 2111 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2144,237,0 chrXVI 268208 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.38;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1582,171,0 chrXVI 268907 . G A 2217 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.84;SB=-1.220e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2250,246,0 chrXVI 269012 . C T 1065 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.05;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1098,120,0 chrXVI 269358 . A G 869 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.73;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:902,102,0 chrXVI 269789 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1212,138,0 chrXVI 269886 . G A 941 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:974,105,0 chrXVI 270158 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.66;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1311,147,0 chrXVI 270515 . T C 1779 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.13;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1812,204,0 chrXVI 270630 . T C 1733 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.15;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1766,201,0 chrXVI 270633 . A T 1757 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.89;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1790,195,0 chrXVI 271011 . C T 713 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.37;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:746,84,0 chrXVI 271083 . T A 984 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.39;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1017,114,0 chrXVI 271095 . C T 1145 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1178,129,0 chrXVI 271460 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.32;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1739,189,0 chrXVI 271555 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.24;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1812,195,0 chrXVI 271666 . C T 1529 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.88;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1562,171,0 chrXVI 271944 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.28;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2306,249,0 chrXVI 272032 . A G 1564 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.77;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1597,177,0 chrXVI 272038 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.12;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1642,183,0 chrXVI 272093 . C G 1187 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.26;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1220,138,0 chrXVI 272485 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.55;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2649,288,0 chrXVI 273202 . A G 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.71;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1413,159,0 chrXVI 273221 . A T 1547 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.49;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1580,168,0 chrXVI 273874 . T C 577 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.90;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:610,69,0 chrXVI 273875 . T C 577 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.90;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:610,69,0 chrXVI 273980 . A G 683 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.09;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:78:716,78,0 chrXVI 274407 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.40;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2116,228,0 chrXVI 274844 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.65;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1635,177,0 chrXVI 275198 . T A 1914 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1947,210,0 chrXVI 275270 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1764,192,0 chrXVI 275384 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.44;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1271,138,0 chrXVI 275387 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.70;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1272,138,0 chrXVI 275594 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1730,198,0 chrXVI 275818 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.82;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1553,168,0 chrXVI 275836 . C A 1669 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.68;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1702,183,0 chrXVI 275949 . G A 1777 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1810,201,0 chrXVI 276243 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.72;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1575,171,0 chrXVI 276934 . G A 1395 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.14;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1428,153,0 chrXVI 277142 . A G 821 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.10;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:96:854,96,0 chrXVI 277547 . A G 1035 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.12;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1068,123,0 chrXVI 277562 . G T 1066 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.38;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1099,117,0 chrXVI 277579 . G A 998 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.83;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1031,111,0 chrXVI 277807 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.11;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1581,171,0 chrXVI 279235 . A G 1540 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.00;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1573,180,0 chrXVI 279259 . G C 1415 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.21;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1448,168,0 chrXVI 279412 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.67;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1211,138,0 chrXVI 279568 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.10;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1489,162,0 chrXVI 279637 . A G 578 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=12.04;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:72:611,72,0 chrXVI 279718 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.77;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:962,105,0 chrXVI 279722 . A G 867 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.06;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:900,102,0 chrXVI 279843 . C T 1040 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.93;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1073,117,0 chrXVI 280333 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1613,177,0 chrXVI 280422 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.52;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1751,198,0 chrXVI 280430 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.39;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1807,195,0 chrXVI 280470 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.13;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1659,183,0 chrXVI 281703 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.95;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2259,249,0 chrXVI 281838 . C A 1218 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=17.40;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1251,138,0 chrXVI 281895 . A G 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.503;QD=16.34;ReadPosRankSum=1.676;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1046,120,0 chrXVI 281904 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.89;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:945,102,0 chrXVI 281956 . C A 1384 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7897;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.52;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1417,159,0 chrXVI 282264 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.524;QD=23.02;ReadPosRankSum=1.652;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1023,117,0 chrXVI 282298 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.41;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:926,108,0 chrXVI 283162 . A C 553 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.04;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,23:24:66:586,66,0 chrXVI 283457 . A T 1638 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.74;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1671,186,0 chrXVI 283612 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.15;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1229,135,0 chrXVI 283893 . A G 2255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=5.202;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.752;QD=21.07;ReadPosRankSum=1.699;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:1,105:107:99:2288,264,0 chrXVI 283936 . T C 2179 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.16;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2212,255,0 chrXVI 284100 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=17.27;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1967,213,0 chrXVI 284142 . A T 2259 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.5474;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.99;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2292,249,0 chrXVI 284388 . T C 2084 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.22;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2117,243,0 chrXVI 284403 . T C 1855 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.2455;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=17.67;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1888,219,0 chrXVI 284476 . T G 1385 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.76;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1418,165,0 chrXVI 284591 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1776,192,0 chrXVI 284661 . A G 1879 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.99;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1912,219,0 chrXVI 284769 . T C 2077 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7380;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.23;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2110,243,0 chrXVI 285327 . T C 1415 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.903;QD=21.12;ReadPosRankSum=0.940;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1448,142,0 chrXVI 285375 . T C 1228 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.54;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1261,141,0 chrXVI 285432 . T C 1167 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.68;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1200,138,0 chrXVI 285867 . G T 1541 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.33;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1574,171,0 chrXVI 286085 . G A 1326 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.68;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1359,144,0 chrXVI 286148 . G A 1664 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=71.5693;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.81;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1697,186,0 chrXVI 286714 . T A 2401 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.65;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2434,264,0 chrXVI 286721 . T C 2210 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.46;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2243,255,0 chrXVI 286787 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.73;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,156,0 chrXVI 286890 . G C 1633 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.37;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1666,186,0 chrXVI 286979 . G A 2210 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.05;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2243,249,0 chrXVI 287066 . G A 1966 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.13;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1999,219,0 chrXVI 287114 . G A 1533 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.33;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1566,171,0 chrXVI 287130 . T C 1379 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.37;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1412,162,0 chrXVI 287198 . T A 1369 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.02;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1402,153,0 chrXVI 287229 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.73;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1277,144,0 chrXVI 287284 . T G 884 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.00;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:917,105,0 chrXVI 287337 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.86;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1153,123,0 chrXVI 287349 . C T 1115 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.76;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1148,126,0 chrXVI 287420 . T C 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.359;QD=21.03;ReadPosRankSum=1.679;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1400,159,0 chrXVI 287521 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=15.17;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,63:65:99:1019,111,0 chrXVI 287853 . T A 1255 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.19;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1288,147,0 chrXVI 288103 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.72;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1362,147,0 chrXVI 288401 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.92;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1527,162,0 chrXVI 288584 . G C 1648 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.16;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,82:86:99:1681,195,0 chrXVI 289053 . G T 1224 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1257,138,0 chrXVI 289247 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.52;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1515,165,0 chrXVI 289277 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1398,150,0 chrXVI 289490 . C A 1944 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1977,219,0 chrXVI 289567 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=89;Dels=0.00;FS=9.639;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.193;QD=23.49;ReadPosRankSum=2.898;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:3,86:89:99:2124,240,0 chrXVI 289837 . G A 3473.01 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.31;SB=-1.370e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:3473,384,0 chrXVI 289908 . G T 2792 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.07;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2825,306,0 chrXVI 290164 . C G 1953 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:1986,222,0 chrXVI 290332 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1659,189,0 chrXVI 290454 . T C 1411 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.06;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1444,165,0 chrXVI 290800 . A G 1353 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=73;Dels=0.00;FS=5.378;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.539;QD=18.53;ReadPosRankSum=3.333;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:4,69:73:99:1386,156,0 chrXVI 291044 . G T 2534 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=22.62;SB=-1.151e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2567,276,0 chrXVI 291046 . G A 2404 SnpCluster AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.90;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,112:115:99:2437,273,0 chrXVI 291053 . T C 2402 SnpCluster AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.36;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2435,273,0 chrXVI 291096 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=24.19;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1944,207,0 chrXVI 292393 . G C 1703 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.20;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,93:99:99:1736,195,0 chrXVI 292465 . G A 1276 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.97;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1309,141,0 chrXVI 292485 . T A 1187 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=16.26;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1220,138,0 chrXVI 292503 . C G 1255 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.68;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1288,147,0 chrXVI 292638 . C T 2061 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.03;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2094,228,0 chrXVI 292699 . C G 2101 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.89;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2134,246,0 chrXVI 292958 . T A 1856 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.13;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1889,207,0 chrXVI 292964 . A G 1786 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.04;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1819,207,0 chrXVI 293051 . G A 2600 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.97;SB=-1.571e+03 GT:AD:DP:GQ:PL 1/1:0,123:124:99:2633,285,0 chrXVI 293369 . A G 2607 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.47;SB=-1.482e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:2640,294,0 chrXVI 293816 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.64;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1891,216,0 chrXVI 294083 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.06;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1653,189,0 chrXVI 294452 . A G 2022 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=20.42;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2055,240,0 chrXVI 294899 . T C 2110 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.31;SB=-1.198e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2143,246,0 chrXVI 295094 . G T 2371 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2404,261,0 chrXVI 295127 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2136,240,0 chrXVI 295177 . G A 2637 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.500e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2670,288,0 chrXVI 295316 . A G 1948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=103;Dels=0.00;FS=3.054;HaplotypeScore=10.4194;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.963;QD=18.91;ReadPosRankSum=2.401;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:2,99:103:99:1981,228,0 chrXVI 295361 . T C 1730 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=86;Dels=0.00;FS=7.533;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-2.160;QD=20.12;ReadPosRankSum=2.392;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:2,83:86:99:1763,195,0 chrXVI 295493 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.38;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1614,186,0 chrXVI 295831 . C T 1656 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.26;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1689,186,0 chrXVI 295852 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=0.412;QD=17.69;ReadPosRankSum=1.650;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1519,177,0 chrXVI 295860 . T G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.064;QD=17.27;ReadPosRankSum=1.689;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1449,168,0 chrXVI 295874 . T A 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.976;QD=17.75;ReadPosRankSum=1.692;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1595,177,0 chrXVI 295921 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9226;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=15.97;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1454,156,0 chrXVI 295944 . A G 1667 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=15.44;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:1700,195,0 chrXVI 295997 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.07;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:1977,213,0 chrXVI 296018 . A C 1861 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=17.23;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1894,222,0 chrXVI 296054 . C T 1937 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.4392;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.81;SB=-1.290e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1970,219,0 chrXVI 296144 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.39;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1757,207,0 chrXVI 296178 . C T 1793 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.60;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1826,198,0 chrXVI 296330 . C T 2745 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.04;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:0,137:137:99:2778,303,0 chrXVI 296345 . A G 2460 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=132;Dels=0.00;FS=3.912;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.541;QD=18.64;ReadPosRankSum=1.705;SB=-1.276e+03 GT:AD:DP:GQ:PL 1/1:1,127:132:99:2493,288,0 chrXVI 296380 . A T 1975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=3.038;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.367;QD=18.99;ReadPosRankSum=2.402;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2008,216,0 chrXVI 296498 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.28;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1884,213,0 chrXVI 296649 . A G 2522 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.76;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2555,288,0 chrXVI 297034 . C T 3048 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.2273;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:3081,333,0 chrXVI 297234 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.71;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1848,201,0 chrXVI 297484 . T A 3605.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.87;SB=-1.990e+03 GT:AD:DP:GQ:PL 1/1:0,151:151:99:3605,390,0 chrXVI 297634 . T A 2233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=2.837;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.702;QD=24.01;ReadPosRankSum=2.344;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:2266,246,0 chrXVI 297828 . A G 2074 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2107,240,0 chrXVI 298155 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.95;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1395,159,0 chrXVI 298438 . C T 564 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=15.24;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:63:597,63,0 chrXVI 298468 . T C 314 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.81;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:39:347,39,0 chrXVI 298471 . G T 349 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.63;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:42:382,42,0 chrXVI 298503 . A T 217.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.080;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-2.408;QD=8.35;ReadPosRankSum=-2.809;SB=3.07 GT:AD:DP:GQ:PL 1/1:3,23:26:27:250,27,0 chrXVI 298521 . G A 347 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=13.35;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:42:380,42,0 chrXVI 298560 . A G 756 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:90:789,90,0 chrXVI 298589 . C T 1249 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.30;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1282,138,0 chrXVI 298955 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.58;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1334,150,0 chrXVI 299535 . A G 1096 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.495;QD=19.57;ReadPosRankSum=1.670;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1129,129,0 chrXVI 299549 . A G 1106 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.75;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1139,126,0 chrXVI 299678 . G T 1094 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.37;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1127,123,0 chrXVI 299735 . A T 870 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=15.82;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:903,99,0 chrXVI 299834 . T C 1708 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.443;QD=20.33;ReadPosRankSum=1.608;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1741,198,0 chrXVI 300071 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.20;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1771,195,0 chrXVI 300401 . T C 2289 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.62;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2322,264,0 chrXVI 300467 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=14.72;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1358,150,0 chrXVI 300478 . G C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=3.928;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=1.485;QD=13.76;ReadPosRankSum=0.907;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1203,141,0 chrXVI 300524 . T C 1061 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=14.34;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1094,126,0 chrXVI 300724 . T C 2763 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=9.9821;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.17;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,136:137:99:2796,315,0 chrXVI 300941 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1431;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.89;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1644,192,0 chrXVI 301121 . G A 1538 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.454;QD=18.31;ReadPosRankSum=1.361;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1571,171,0 chrXVI 301187 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=108;Dels=0.00;FS=2.586;HaplotypeScore=8.1717;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.248;QD=18.52;ReadPosRankSum=2.934;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:3,103:108:99:2033,231,0 chrXVI 301234 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5192;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.93;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:1726,189,0 chrXVI 301260 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=6.491;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.415;QD=18.69;ReadPosRankSum=1.075;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1640,183,0 chrXVI 301308 . C T 1842 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.46;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1875,204,0 chrXVI 301341 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4319;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.89;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1631,183,0 chrXVI 301444 . T C 1568 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1601,186,0 chrXVI 301525 . G A 1879 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.37;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1912,213,0 chrXVI 301568 . C A 2224 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.98;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2257,243,0 chrXVI 301572 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.30;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2059,240,0 chrXVI 301695 . C G 2284 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.39;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2317,258,0 chrXVI 301952 . A G 1506 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.06;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1539,174,0 chrXVI 302222 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1719,198,0 chrXVI 302336 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.94;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1645,183,0 chrXVI 302633 . T C 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=4.708;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.325;QD=19.82;ReadPosRankSum=1.681;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1381,156,0 chrXVI 302673 . G A 1824 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.69;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1857,201,0 chrXVI 302738 . A G 905 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.08;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:938,108,0 chrXVI 302814 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.00;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:953,102,0 chrXVI 302825 . T A 897 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:99:930,102,0 chrXVI 302992 . T A 313 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=10.10;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:346,39,0 chrXVI 303354 . C T 2231 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=25.35;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2264,246,0 chrXVI 303780 . T C 2257 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9745;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.50;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:2290,258,0 chrXVI 303807 . C T 2279 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.74;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2312,249,0 chrXVI 304183 . A G 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.806;DP=78;Dels=0.00;FS=5.651;HaplotypeScore=5.8842;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.052;QD=16.63;ReadPosRankSum=2.209;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:3,75:78:99:1330,150,0 chrXVI 304189 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7295;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.78;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1404,153,0 chrXVI 304195 . T C 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.208;DP=77;Dels=0.00;FS=8.577;HaplotypeScore=6.4880;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.945;QD=17.05;ReadPosRankSum=1.970;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1346,150,0 chrXVI 304351 . C A 3496.01 PASS AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.06;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,166:166:99:3496,387,0 chrXVI 304561 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.32;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1717,192,0 chrXVI 304587 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.41;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1686,198,0 chrXVI 304635 . C T 1509 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.18;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1542,165,0 chrXVI 304734 . A T 2312 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5851;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.23;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2345,252,0 chrXVI 304831 . A G 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.058;QD=16.23;ReadPosRankSum=2.373;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:2,62:66:99:1104,123,0 chrXVI 304862 . T C 772 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.32;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:805,90,0 chrXVI 304957 . T G 882 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.37;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:915,102,0 chrXVI 304984 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.25;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1228,138,0 chrXVI 305273 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.95;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:977,105,0 chrXVI 305588 . C T 1163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.38;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1196,129,0 chrXVI 305812 . C T 1704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.140;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.456;QD=22.13;ReadPosRankSum=-0.365;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1737,171,0 chrXVI 306198 . A T 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=2.944;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.229;QD=19.03;ReadPosRankSum=2.344;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:2,68:70:99:1365,147,0 chrXVI 306302 . T C 2496 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=23.55;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2529,285,0 chrXVI 306430 . A G 745 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.74;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:87:778,87,0 chrXVI 306476 . G T 867 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.67;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:900,96,0 chrXVI 306518 . G C 1112 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=16.35;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1145,129,0 chrXVI 306525 . T C 1302 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.15;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1335,150,0 chrXVI 306746 . C T 839 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.24;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:872,93,0 chrXVI 307244 . T A 1225 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=4.964;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.431;QD=17.50;ReadPosRankSum=1.632;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1258,138,0 chrXVI 307847 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3593;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=18.97;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,93:96:99:1854,216,0 chrXVI 308140 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.1214;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.54;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2058,234,0 chrXVI 308329 . C T 2103 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.24;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2136,231,0 chrXVI 308420 . A G 2006 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8229;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.476;QD=22.04;ReadPosRankSum=1.694;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:2039,231,0 chrXVI 308554 . T A 1804 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=16.55;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1837,204,0 chrXVI 308578 . T G 1795 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.94;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1828,204,0 chrXVI 308669 . G A 1579 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.93;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1612,174,0 chrXVI 308781 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9532;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=16.74;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1305,147,0 chrXVI 308785 . G T 1292 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.15;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1325,144,0 chrXVI 308938 . G A 800 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,38:40:90:833,90,0 chrXVI 308999 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.25;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1212,138,0 chrXVI 309089 . G T 1040 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.77;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1073,120,0 chrXVI 309206 . G T 970 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=14.92;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1003,111,0 chrXVI 309587 . G A 739 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=13.94;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:87:772,87,0 chrXVI 309787 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.57;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1110,129,0 chrXVI 309796 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.39;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:54:99:972,111,0 chrXVI 309899 . T A 1120 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.933;QD=21.54;ReadPosRankSum=1.666;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1153,123,0 chrXVI 309958 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.54;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1261,144,0 chrXVI 310009 . T G 1618 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1651,192,0 chrXVI 310045 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.81;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1578,174,0 chrXVI 310159 . C T 1479 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.11;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1512,165,0 chrXVI 310795 . G A 2035 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.20;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2068,228,0 chrXVI 310970 . A C 1609 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4841;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.11;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1642,183,0 chrXVI 311025 . T C 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=3.067;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.517;QD=19.20;ReadPosRankSum=2.350;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1454,165,0 chrXVI 311060 . G A 1427 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.901;DP=75;Dels=0.00;FS=3.979;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.686;QD=19.03;ReadPosRankSum=1.686;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1460,159,0 chrXVI 311427 . G A 1215 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.87;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1248,138,0 chrXVI 311442 . C T 1285 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=16.06;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1318,147,0 chrXVI 311865 . G A 1121 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.42;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1154,123,0 chrXVI 311955 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1329,147,0 chrXVI 312483 . G T 3164 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.44;SB=-1.351e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:3197,348,0 chrXVI 312657 . A T 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.408;QD=17.57;ReadPosRankSum=1.681;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1228,132,0 chrXVI 312873 . T C 2588 filter AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.23;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,142:142:99:2621,306,0 chrXVI 312892 . T A 2493 filter AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2526,276,0 chrXVI 313008 . C T 435 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.75;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:51:468,51,0 chrXVI 313092 . A G 384 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.004;QD=20.21;ReadPosRankSum=0.639;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:1,18:19:48:417,48,0 chrXVI 313228 . C T 934 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.78;SB=-8.401e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:967,105,0 chrXVI 313494 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1486,162,0 chrXVI 313832 . G A 1663 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1696,186,0 chrXVI 314083 . C G 1291 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.65;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1324,150,0 chrXVI 314443 . A G 1013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=4.372;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.532;QD=19.48;ReadPosRankSum=1.599;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1046,117,0 chrXVI 315182 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.80;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2151,243,0 chrXVI 315304 . T C 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.500;QD=23.83;ReadPosRankSum=1.666;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2511,282,0 chrXVI 315388 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7624;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.68;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,90:93:99:1956,228,0 chrXVI 315512 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1325,144,0 chrXVI 316099 . A G 1587 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.258;QD=21.74;ReadPosRankSum=1.685;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1620,183,0 chrXVI 316580 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.44;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1505,171,0 chrXVI 316728 . A G 1258 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.990;QD=22.46;ReadPosRankSum=1.670;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1291,150,0 chrXVI 316765 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1254,141,0 chrXVI 316953 . A G 1349 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.13;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1382,162,0 chrXVI 317528 . A G 1783 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.49;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1816,204,0 chrXVI 317602 . G A 1776 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.20;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1809,198,0 chrXVI 317619 . G C 1561 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.51;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1594,183,0 chrXVI 317622 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.88;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1578,171,0 chrXVI 317677 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=20.94;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1101,120,0 chrXVI 318016 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.33;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1408,162,0 chrXVI 318049 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.21;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1645,177,0 chrXVI 318072 . T G 1235 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.16;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1268,141,0 chrXVI 318145 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.19;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:901,99,0 chrXVI 318508 . G A 1095 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.55;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1128,123,0 chrXVI 320279 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.65;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1332,153,0 chrXVI 320399 . C A 1489 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3115;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.22;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1522,168,0 chrXVI 321502 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1438,156,0 chrXVI 321586 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.14;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1103,123,0 chrXVI 321635 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=12.66;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1008,117,0 chrXVI 321640 . A C 1005 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=2.619;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=0.971;QD=12.56;ReadPosRankSum=2.357;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:2,78:80:99:1038,117,0 chrXVI 321733 . A G 1617 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.909;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-2.044;QD=20.47;ReadPosRankSum=2.325;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1650,183,0 chrXVI 321864 . T C 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-0.527;QD=20.58;ReadPosRankSum=1.619;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1947,219,0 chrXVI 321964 . G C 1498 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.70;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1531,171,0 chrXVI 322106 . A G 1861 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.70;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1894,213,0 chrXVI 322136 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.51;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1856,201,0 chrXVI 322198 . G C 2358 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0535;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.50;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,111:115:99:2391,273,0 chrXVI 322226 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.38;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,117:118:99:2556,288,0 chrXVI 322298 . A G 1616 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=3.163;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;MQRankSum=-0.418;QD=13.93;ReadPosRankSum=1.702;SB=-1.412e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:1649,186,0 chrXVI 322300 . A T 1519 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=13.21;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:1552,171,0 chrXVI 322313 . A G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=132;Dels=0.00;FS=3.946;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.685;QD=10.00;ReadPosRankSum=1.705;SB=-1.338e+03 GT:AD:DP:GQ:PL 1/1:1,128:132:99:1353,153,0 chrXVI 322325 . G A 1814 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.0079;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=12.09;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,148:150:99:1847,204,0 chrXVI 322652 . A G 3177 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=22.06;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:3210,360,0 chrXVI 322887 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.18;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1354,147,0 chrXVI 323015 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.91;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1785,204,0 chrXVI 323018 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.75;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1838,198,0 chrXVI 323207 . A G 1078 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.14;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1111,126,0 chrXVI 323469 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.66;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1339,156,0 chrXVI 323512 . T G 1001 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.25;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1034,114,0 chrXVI 323528 . C T 1057 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.62;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1090,120,0 chrXVI 323715 . T C 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.627;QD=21.11;ReadPosRankSum=1.680;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1426,165,0 chrXVI 323872 . G T 1542 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.03;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1575,174,0 chrXVI 323900 . C G 1746 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.30;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1779,204,0 chrXVI 323982 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=19.24;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,67:70:99:1380,150,0 chrXVI 324018 . C T 760 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=15.83;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:793,87,0 chrXVI 324025 . T G 475 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=0.140;QD=12.84;ReadPosRankSum=1.452;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:57:508,57,0 chrXVI 324148 . T C 704 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=17.60;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:737,87,0 chrXVI 324160 . G A 651 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=31.7282;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=17.59;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:75:684,75,0 chrXVI 324176 . A C 562 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=15.19;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:595,69,0 chrXVI 324228 . A T 814 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.85;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:847,96,0 chrXVI 324252 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.67;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1060,114,0 chrXVI 324298 . A T 1110 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.632;QD=17.08;ReadPosRankSum=1.677;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1143,123,0 chrXVI 324345 . G A 659 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=16.07;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:692,75,0 chrXVI 324348 . G A 568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;MQRankSum=-1.225;QD=13.52;ReadPosRankSum=1.225;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:1,40:42:66:601,66,0 chrXVI 324389 . A G 545 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.7704;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=12.39;SB=-2.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:66:578,66,0 chrXVI 324393 . G C 557 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=9.9525;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=12.11;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:69:590,69,0 chrXVI 324400 . A G 622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=48;Dels=0.00;FS=7.690;HaplotypeScore=5.5370;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-0.774;QD=12.96;ReadPosRankSum=1.659;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:75:655,75,0 chrXVI 324468 . C T 925 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=23.12;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:958,105,0 chrXVI 324519 . G A 886 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.26;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:919,105,0 chrXVI 324645 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.61;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1751,198,0 chrXVI 324690 . A C 1241 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.39;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1274,144,0 chrXVI 325353 . G A 1832 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.19;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1865,204,0 chrXVI 325464 . C T 796 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.09;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:90:829,90,0 chrXVI 325596 . T G 1185 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.43;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1218,141,0 chrXVI 325797 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.42;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1299,147,0 chrXVI 325815 . A G 973 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=18.02;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1006,117,0 chrXVI 325850 . T C 1488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.168;QD=19.08;ReadPosRankSum=3.669;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:5,72:78:99:1521,152,0 chrXVI 325896 . G C 1991 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.41;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2024,228,0 chrXVI 326109 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.53;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1145,126,0 chrXVI 326160 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.43;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1249,138,0 chrXVI 326171 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.14;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1250,141,0 chrXVI 326203 . C T 1145 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=14.49;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1178,132,0 chrXVI 326294 . G T 554 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.581;DP=70;Dels=0.00;FS=3.066;HaplotypeScore=66.2041;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=0.609;QD=7.91;ReadPosRankSum=1.044;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:3,67:70:75:587,75,0 chrXVI 326349 . T A 1048 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=-1.347;QD=16.63;ReadPosRankSum=1.677;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1081,117,0 chrXVI 326457 . T G 780 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.53;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:813,93,0 chrXVI 326546 . A G 913 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.29;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:946,111,0 chrXVI 326711 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.05;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1636,186,0 chrXVI 326717 . T C 1568 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.346;QD=16.51;ReadPosRankSum=1.696;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:1601,183,0 chrXVI 326955 . T G 1645 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.48;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1678,189,0 chrXVI 327019 . A G 1793 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.723;DP=104;Dels=0.00;FS=4.843;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.714;QD=17.24;ReadPosRankSum=3.708;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:5,99:104:99:1826,207,0 chrXVI 327045 . A G 1709 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0817;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.180;QD=17.26;ReadPosRankSum=2.139;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:2,93:99:99:1742,192,0 chrXVI 327318 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.04;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1106,126,0 chrXVI 327623 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.12;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1385,153,0 chrXVI 327765 . T C 3019 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.59;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:3052,342,0 chrXVI 327863 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.38;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1618,177,0 chrXVI 327885 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.10;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1673,180,0 chrXVI 328317 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.53;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1534,165,0 chrXVI 328395 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.92;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1560,174,0 chrXVI 329027 . A G 405 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.25;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:438,51,0 chrXVI 329164 . A G 483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=7.202;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.578;QD=23.00;ReadPosRankSum=1.569;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:1,20:21:57:516,57,0 chrXVI 329462 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:958,108,0 chrXVI 329486 . T C 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.072;QD=21.04;ReadPosRankSum=1.660;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1043,120,0 chrXVI 330214 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.31;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2022,222,0 chrXVI 330238 . A G 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-1.542;QD=18.02;ReadPosRankSum=1.694;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1691,195,0 chrXVI 330556 . A G 1501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.24;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1534,177,0 chrXVI 330799 . A G 1987 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.37;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2020,240,0 chrXVI 330991 . C T 2429 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.24;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2462,264,0 chrXVI 331267 . T C 1684 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=92;Dels=0.00;FS=6.064;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.011;QD=18.30;ReadPosRankSum=2.924;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:3,89:92:99:1717,198,0 chrXVI 331831 . T C 1108 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.87;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1141,126,0 chrXVI 331845 . C T 961 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.47;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:994,108,0 chrXVI 331870 . G C 1002 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=18.56;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1035,117,0 chrXVI 331899 . T A 1328 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.25;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1361,150,0 chrXVI 331974 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.65;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1722,189,0 chrXVI 331976 . G T 1644 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.35;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1677,186,0 chrXVI 332036 . C T 1102 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=16.70;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1135,120,0 chrXVI 332039 . T C 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=0.000;QD=15.47;ReadPosRankSum=1.680;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1054,117,0 chrXVI 332346 . G A 2037 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.38;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2070,222,0 chrXVI 332562 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.16;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1577,171,0 chrXVI 332646 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.94;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1700,189,0 chrXVI 332811 . T C 1272 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.17;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1305,153,0 chrXVI 332822 . A G 1313 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8913;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.962;QD=18.24;ReadPosRankSum=1.540;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1346,153,0 chrXVI 332928 . C T 1229 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.35;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1262,138,0 chrXVI 332952 . G A 1283 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.37;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1316,141,0 chrXVI 333067 . G C 2038 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.20;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2071,237,0 chrXVI 333103 . T C 2455 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.439;DP=124;Dels=0.00;FS=2.594;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.878;QD=19.80;ReadPosRankSum=2.943;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:3,121:124:99:2488,288,0 chrXVI 333741 . C T 2550 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.97;SB=-1.444e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2583,285,0 chrXVI 333887 . A G 2230 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.86;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2263,252,0 chrXVI 334023 . G A 1624 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.09;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1657,180,0 chrXVI 334207 . A G 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=67;Dels=0.00;FS=2.626;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.167;QD=19.34;ReadPosRankSum=2.835;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:3,64:67:99:1329,150,0 chrXVI 334494 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.57;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1288,150,0 chrXVI 334619 . T C 1081 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.732;QD=18.96;ReadPosRankSum=1.670;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1114,129,0 chrXVI 334746 . A G 2068 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=6.160;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.112;QD=21.77;ReadPosRankSum=1.696;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2101,243,0 chrXVI 335001 . T C 2017 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.58;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2050,231,0 chrXVI 335020 . C T 2073 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.19;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2106,231,0 chrXVI 335267 . C T 1833 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.37;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1866,201,0 chrXVI 335400 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.62;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2132,237,0 chrXVI 335412 . T C 1947 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.995;QD=20.71;ReadPosRankSum=1.695;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1980,228,0 chrXVI 335468 . T C 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-1.410;QD=19.85;ReadPosRankSum=1.692;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1760,201,0 chrXVI 335498 . A G 927 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.45;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:960,108,0 chrXVI 335504 . G A 967 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.12;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1000,108,0 chrXVI 335609 . C G 1682 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.90;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1715,192,0 chrXVI 335909 . T C 2732 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=142;Dels=0.00;FS=2.578;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.526;QD=19.24;ReadPosRankSum=2.345;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:2,139:142:99:2765,324,0 chrXVI 336337 . A G 3072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=149;Dels=0.00;FS=2.710;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.059;QD=20.62;ReadPosRankSum=2.399;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:2,145:149:99:3105,360,0 chrXVI 336514 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.54;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2210,255,0 chrXVI 336590 . G A 2045 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2078,225,0 chrXVI 336865 . T A 1656 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5395;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.95;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1689,186,0 chrXVI 337138 . A G 1008 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.02;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:1041,117,0 chrXVI 337160 . C T 861 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.57;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:894,99,0 chrXVI 337179 . T C 753 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=15.69;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:90:786,90,0 chrXVI 337318 . A G 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.877;QD=18.66;ReadPosRankSum=1.687;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1470,171,0 chrXVI 337348 . C G 2045 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.29;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2078,234,0 chrXVI 337511 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.23;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2001,216,0 chrXVI 337724 . G C 1531 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5992;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.38;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1564,174,0 chrXVI 337865 . G A 1738 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.38;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1771,198,0 chrXVI 338332 . G A 2438 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.0034;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.39;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,112:114:99:2471,270,0 chrXVI 338640 . A T 1031 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.04;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1064,114,0 chrXVI 338828 . T C 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.962;QD=17.06;ReadPosRankSum=1.604;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,53:62:99:1091,123,0 chrXVI 338953 . A G 473 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.92;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:57:506,57,0 chrXVI 339046 . T C 851 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=-0.802;QD=14.93;ReadPosRankSum=2.364;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:83:884,83,0 chrXVI 339050 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=16.61;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1013,108,0 chrXVI 339270 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.82;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1222,141,0 chrXVI 339275 . G T 1155 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.58;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1188,129,0 chrXVI 339321 . A C 1527 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.64;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1560,177,0 chrXVI 339477 . C T 1408 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=14.52;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1441,162,0 chrXVI 339485 . T C 1354 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.385;QD=15.04;ReadPosRankSum=1.694;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1387,159,0 chrXVI 339486 . G A 1438 SnpCluster AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.63;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1471,162,0 chrXVI 340132 . C T 1881 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.45;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1914,210,0 chrXVI 340194 . T C 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.529;QD=20.54;ReadPosRankSum=1.684;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1512,174,0 chrXVI 340345 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.23;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1377,153,0 chrXVI 340435 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.58;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1345,147,0 chrXVI 340525 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=12.0744;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=17.07;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1638,183,0 chrXVI 340795 . G A 1105 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.42;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1138,126,0 chrXVI 340831 . G T 529 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.025;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=0.462;QD=15.11;ReadPosRankSum=1.954;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:2,33:35:60:562,60,0 chrXVI 341278 . T C 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.195;QD=20.92;ReadPosRankSum=1.683;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1539,177,0 chrXVI 341332 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.09;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1535,174,0 chrXVI 341647 . G A 2139 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.39;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2172,237,0 chrXVI 341700 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.09;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2381,261,0 chrXVI 341710 . A G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=120;Dels=0.00;FS=11.311;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-1.609;QD=18.33;ReadPosRankSum=2.409;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2233,243,0 chrXVI 341712 . C A 2227 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=18.56;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2260,246,0 chrXVI 341735 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=15.92;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1832,204,0 chrXVI 342372 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.74;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1750,198,0 chrXVI 342600 . A G 1875 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1908,210,0 chrXVI 342688 . G A 1553 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.06;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1586,174,0 chrXVI 342745 . G A 2394 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.19;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2427,267,0 chrXVI 343066 . C T 2020 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.49;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2053,231,0 chrXVI 343255 . A T 1209 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.19;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1242,135,0 chrXVI 343290 . C A 1043 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.45;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1076,117,0 chrXVI 343450 . C A 1868 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7793;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.35;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1901,207,0 chrXVI 344269 . T G 1776 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.40;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1809,204,0 chrXVI 344324 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1767;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=16.86;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1382,156,0 chrXVI 344506 . C A 1274 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.75;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1307,141,0 chrXVI 344589 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1131,123,0 chrXVI 344777 . T C 913 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=19.43;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:946,105,0 chrXVI 344783 . G A 924 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.86;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:957,105,0 chrXVI 345980 . A G 1394 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=8.905;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.168;QD=21.12;ReadPosRankSum=2.226;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1427,156,0 chrXVI 346247 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.60;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1265,144,0 chrXVI 346331 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=6.189;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.701;QD=18.99;ReadPosRankSum=2.388;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1533,168,0 chrXVI 346505 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=14.90;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1180,135,0 chrXVI 346506 . C A 1240 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1273,135,0 chrXVI 346628 . C T 1532 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1565,171,0 chrXVI 347144 . A G 2076 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.81;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2109,240,0 chrXVI 347451 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.92;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1811,198,0 chrXVI 347463 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.28;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1716,186,0 chrXVI 347719 . T A 1257 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=19.95;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1290,150,0 chrXVI 347757 . C G 1201 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=16.45;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1234,141,0 chrXVI 347759 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.45;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1343,147,0 chrXVI 347790 . A C 1225 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.14;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1258,141,0 chrXVI 347963 . G A 1053 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;QD=14.42;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1086,117,0 chrXVI 347969 . G A 880 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=12.05;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:913,105,0 chrXVI 347973 . A G 868 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;MQRankSum=-2.416;QD=12.06;ReadPosRankSum=2.381;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:901,102,0 chrXVI 347977 . T G 823 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.44;MQ0=0;QD=12.66;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:856,99,0 chrXVI 347979 . C A 807 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.61;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:93:840,93,0 chrXVI 347980 . A C 813 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=12.32;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:96:846,96,0 chrXVI 347997 . A C 1067 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=13.34;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1100,129,0 chrXVI 348034 . T C 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.364;QD=16.75;ReadPosRankSum=1.647;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1390,162,0 chrXVI 348056 . A G 1600 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.02;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1633,183,0 chrXVI 348151 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.92;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1471,165,0 chrXVI 348254 . T G 847 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.65;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:880,99,0 chrXVI 348262 . A T 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=3.543;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.532;QD=16.23;ReadPosRankSum=1.666;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:877,99,0 chrXVI 348431 . A G 1618 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.34;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:99:99:1651,189,0 chrXVI 348475 . A T 1875 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=23.2188;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.32;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1908,207,0 chrXVI 348505 . A T 2053 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.81;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2086,231,0 chrXVI 348547 . T C 1351 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.890;QD=17.32;ReadPosRankSum=1.685;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,73:78:99:1384,159,0 chrXVI 348646 . A G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.160;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.363;QD=20.97;ReadPosRankSum=1.692;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1857,219,0 chrXVI 348739 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.14;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1375,147,0 chrXVI 348815 . T C 1281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.594;QD=18.30;ReadPosRankSum=1.633;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1314,153,0 chrXVI 349570 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.62;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1426,156,0 chrXVI 349717 . G C 1063 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.33;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:55:99:1096,126,0 chrXVI 349888 . G C 753 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.82;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:84:786,84,0 chrXVI 349901 . A T 638 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.79;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:671,72,0 chrXVI 350090 . T A 567 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=21.00;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:66:600,66,0 chrXVI 350221 . G A 1966 filter AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1999,231,0 chrXVI 350251 . T A 1952 filter AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=24.71;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1985,222,0 chrXVI 350341 . T C 1178 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.56;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1211,135,0 chrXVI 350422 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=17.25;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1482,168,0 chrXVI 350434 . A G 1117 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=14.89;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1150,132,0 chrXVI 350446 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=15.64;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1159,126,0 chrXVI 350455 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=12.60;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:915,99,0 chrXVI 350476 . C T 990 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=13.38;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1023,111,0 chrXVI 350479 . C T 1004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-1.395;QD=13.94;ReadPosRankSum=-0.144;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1037,114,0 chrXVI 350533 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=17.32;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2007,225,0 chrXVI 350654 . C G 1651 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.89;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1684,186,0 chrXVI 350713 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.661;QD=19.30;ReadPosRankSum=1.661;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1924,219,0 chrXVI 350968 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.58;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1575,171,0 chrXVI 351211 . A G 1878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=116;Dels=0.00;FS=2.492;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.818;QD=16.19;ReadPosRankSum=2.870;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:3,113:116:99:1911,222,0 chrXVI 351571 . C T 3065 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3098,336,0 chrXVI 352228 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.37;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1699,192,0 chrXVI 352479 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.73;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1513,165,0 chrXVI 352604 . T G 974 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.17;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1007,114,0 chrXVI 352962 . A G 1447 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1480,171,0 chrXVI 353144 . A G 1365 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=6.660;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.331;QD=21.33;ReadPosRankSum=2.373;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1398,159,0 chrXVI 353391 . G C 1319 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1352,153,0 chrXVI 353638 . C T 1211 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1244,138,0 chrXVI 353883 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1229,135,0 chrXVI 353939 . G A 1344 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.1106;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.33;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1377,150,0 chrXVI 354359 . C T 2218 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2251,249,0 chrXVI 354478 . C G 1415 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7507;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.62;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1448,165,0 chrXVI 354498 . A G 1596 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.70;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1629,180,0 chrXVI 354697 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.32;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1984,219,0 chrXVI 354933 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.37;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1613,180,0 chrXVI 355038 . T C 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.78;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1633,186,0 chrXVI 355068 . G T 1642 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.78;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1675,186,0 chrXVI 355469 . C T 1319 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.62;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1352,147,0 chrXVI 355544 . C A 2468 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2501,267,0 chrXVI 356245 . T G 1292 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.33;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1325,150,0 chrXVI 356350 . G C 1568 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.48;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1601,180,0 chrXVI 356455 . A G 1699 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.98;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1732,198,0 chrXVI 356553 . G A 912 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.83;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:945,102,0 chrXVI 356680 . C T 711 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=12.26;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:81:744,81,0 chrXVI 356776 . T C 1373 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.19;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1406,156,0 chrXVI 356805 . G A 1499 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.11;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1532,165,0 chrXVI 356869 . C T 1214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.596;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.675;QD=19.27;ReadPosRankSum=1.675;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1247,135,0 chrXVI 356972 . C T 865 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.10;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:96:898,96,0 chrXVI 356993 . C T 733 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.32;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:766,84,0 chrXVI 357136 . T C 824 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.16;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:857,99,0 chrXVI 357296 . T C 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.279;QD=18.81;ReadPosRankSum=1.565;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1199,138,0 chrXVI 357327 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.27;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1229,135,0 chrXVI 358102 . A G 1933 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.302;QD=17.57;ReadPosRankSum=1.669;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,108:110:99:1966,225,0 chrXVI 358161 . G A 2141 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.64;SB=-1.312e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2174,234,0 chrXVI 358459 . T C 1688 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=2.742;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.078;QD=19.18;ReadPosRankSum=2.366;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1721,192,0 chrXVI 358537 . A G 2378 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2411,273,0 chrXVI 358747 . A G 1958 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.1217;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.217;QD=19.98;ReadPosRankSum=1.696;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1991,228,0 chrXVI 358822 . T A 1548 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1581,174,0 chrXVI 358961 . C G 1458 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1491,168,0 chrXVI 359005 . A G 1406 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.855;QD=18.75;ReadPosRankSum=1.686;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1439,165,0 chrXVI 359094 . G A 1315 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=19.92;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1348,147,0 chrXVI 359115 . C G 1242 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=18.82;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1275,147,0 chrXVI 359175 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.01;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1654,180,0 chrXVI 359182 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.52;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1818,201,0 chrXVI 359468 . C A 259 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.85;MQ0=0;QD=8.35;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:33:292,33,0 chrXVI 359574 . T A 953 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.72;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:986,108,0 chrXVI 359596 . G A 915 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.80;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:948,102,0 chrXVI 359608 . A C 645 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.433;DP=39;Dels=0.00;FS=8.245;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.496;QD=16.54;ReadPosRankSum=1.496;SB=-2.101e+01 GT:AD:DP:GQ:PL 1/1:2,37:39:62:678,62,0 chrXVI 359680 . G T 505 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=14.03;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:57:538,57,0 chrXVI 359694 . C T 773 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=15.78;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:806,87,0 chrXVI 359890 . T A 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=53.0385;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-0.018;QD=22.43;ReadPosRankSum=2.340;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1536,174,0 chrXVI 360040 . T C 1582 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=70;Dels=0.00;FS=2.868;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.876;QD=22.60;ReadPosRankSum=2.379;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:2,67:70:99:1615,177,0 chrXVI 360123 . G A 1617 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=16.84;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1650,177,0 chrXVI 360124 . A C 1586 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=16.52;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1619,183,0 chrXVI 360138 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=15.68;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1585,174,0 chrXVI 360139 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=15.32;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1565,168,0 chrXVI 360155 . G C 1387 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.67;MQ0=0;QD=13.34;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:1420,168,0 chrXVI 360170 . A G 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;MQRankSum=0.484;QD=13.25;ReadPosRankSum=1.638;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:1504,174,0 chrXVI 360191 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=13.97;SB=-1.325e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:1695,183,0 chrXVI 360315 . G C 1866 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.29;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:1899,213,0 chrXVI 360607 . T C 1934 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.759;QD=19.54;ReadPosRankSum=0.311;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1967,225,0 chrXVI 360643 . A G 2047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.658;QD=20.27;ReadPosRankSum=1.663;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2080,234,0 chrXVI 360694 . G A 2136 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.293e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2169,234,0 chrXVI 360727 . A G 1945 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.095;QD=21.37;ReadPosRankSum=0.933;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1978,222,0 chrXVI 360769 . T G 1894 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7598;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.28;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1927,225,0 chrXVI 361001 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1491;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.64;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1832,207,0 chrXVI 361153 . G A 1863 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.82;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1896,204,0 chrXVI 361213 . T C 1803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.663;QD=17.50;ReadPosRankSum=1.628;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:1,99:103:99:1836,210,0 chrXVI 361590 . C T 1678 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.4766;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.29;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1711,192,0 chrXVI 361836 . C G 1605 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.26;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1638,186,0 chrXVI 361856 . A G 1331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.914;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.285;QD=21.47;ReadPosRankSum=1.621;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1364,153,0 chrXVI 362022 . T A 2334 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6794;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.65;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2367,276,0 chrXVI 362269 . G C 2293 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.94;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2326,261,0 chrXVI 362462 . T C 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.539;QD=20.60;ReadPosRankSum=1.655;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1887,216,0 chrXVI 362546 . T C 1825 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1858,219,0 chrXVI 362882 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.49;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1426,165,0 chrXVI 363029 . A G 1936 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0914;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.60;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1969,216,0 chrXVI 363066 . T G 1894 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=3.510;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.017;QD=20.37;ReadPosRankSum=1.694;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1927,216,0 chrXVI 363218 . T C 1008 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.02;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1041,120,0 chrXVI 363492 . C A 1233 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.83;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1266,138,0 chrXVI 363580 . C T 1213 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.91;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1246,135,0 chrXVI 363695 . G A 2063 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.18;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2096,225,0 chrXVI 363977 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.56;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1616,177,0 chrXVI 364060 . T G 1549 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1582,183,0 chrXVI 364156 . T G 1906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.473;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.421;QD=21.18;ReadPosRankSum=1.693;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1939,216,0 chrXVI 364396 . C T 2760 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.09;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2793,303,0 chrXVI 364729 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.56;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1870,213,0 chrXVI 364999 . A G 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=85;Dels=0.00;FS=3.022;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.015;QD=20.74;ReadPosRankSum=2.390;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:2,81:85:99:1796,201,0 chrXVI 365403 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.51;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1838,198,0 chrXVI 365411 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.95;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1644,177,0 chrXVI 365764 . C G 1692 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.18;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1725,198,0 chrXVI 365920 . T C 933 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.28;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:966,114,0 chrXVI 366649 . G A 1600 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.62;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1633,183,0 chrXVI 367091 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.58;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1673,186,0 chrXVI 368095 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1391,156,0 chrXVI 368135 . C T 1402 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1435,156,0 chrXVI 368305 . A G 1326 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5101;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.10;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1359,153,0 chrXVI 368905 . T C 1304 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.90;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1337,147,0 chrXVI 369001 . C T 1429 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1462,159,0 chrXVI 369476 . A G 1544 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.409;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.280;QD=22.38;ReadPosRankSum=1.682;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1577,177,0 chrXVI 369748 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.43;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1233,138,0 chrXVI 370280 . A G 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=7.173;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.592;QD=20.87;ReadPosRankSum=2.322;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1640,189,0 chrXVI 371598 . T C 2603 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.43;SB=-1.526e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2636,291,0 chrXVI 371706 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,105:107:99:2197,249,0 chrXVI 372742 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1830,198,0 chrXVI 373029 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:925,99,0 chrXVI 373351 . T C 794 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.90;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,42:42:93:827,93,0 chrXVI 373419 . T G 693 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.088;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.999;QD=16.90;ReadPosRankSum=2.330;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:84:726,84,0 chrXVI 373422 . T A 645 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=15.36;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:75:678,75,0 chrXVI 373522 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=7.928;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.483;QD=19.13;ReadPosRankSum=2.343;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1353,153,0 chrXVI 373627 . T C 1977 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.38;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2010,225,0 chrXVI 373847 . A G 881 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.15;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:914,105,0 chrXVI 373891 . C T 1156 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.59;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1189,129,0 chrXVI 373946 . G A 2159 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.76;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2192,240,0 chrXVI 374261 . C T 1785 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3798;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.77;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1818,195,0 chrXVI 375403 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.10;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1644,186,0 chrXVI 375855 . G A 2522 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.3950;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.32;SB=-1.218e+03 GT:AD:DP:GQ:PL 1/1:0,111:113:99:2555,276,0 chrXVI 376312 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.23;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1764,198,0 chrXVI 377062 . T A 444 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=12.00;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:54:477,54,0 chrXVI 377336 . C T 448 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=10;QD=16.00;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:54:481,54,0 chrXVI 377648 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=3;QD=20.66;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1479,159,0 chrXVI 378635 . G C 1088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.770;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.155;QD=19.43;ReadPosRankSum=1.604;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1121,112,0 chrXVI 378670 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.14;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1259,138,0 chrXVI 378721 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8742;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=16.80;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1041,117,0 chrXVI 378809 . A T 1280 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.29;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1313,144,0 chrXVI 378865 . A G 746 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;QD=15.87;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,47:47:90:779,90,0 chrXVI 379018 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.20;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1010,114,0 chrXVI 379460 . C T 1822 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;QD=18.78;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1855,201,0 chrXVI 379971 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.31;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1887,216,0 chrXVI 380250 . A G 1435 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=79;Dels=0.00;FS=5.206;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.778;QD=18.16;ReadPosRankSum=3.253;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:4,75:79:99:1468,168,0 chrXVI 380674 . G C 905 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.40;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:938,105,0 chrXVI 381121 . T C 1600 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.663;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.089;QD=22.86;ReadPosRankSum=1.683;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1633,180,0 chrXVI 381495 . G C 1021 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1054,120,0 chrXVI 381627 . G A 244 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.18;SB=-1.085e-02 GT:AD:DP:GQ:PL 1/1:0,11:11:30:277,30,0 chrXVI 381741 . G A 465 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-6.553e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:54:498,54,0 chrXVI 381919 . A G 1021 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:51:99:1054,120,0 chrXVI 381922 . A C 1049 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1082,120,0 chrXVI 381960 . C T 836 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=17.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,47:47:99:869,99,0 chrXVI 382120 . A C 540 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.48;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:66:573,66,0 chrXVI 382203 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.07;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1099,120,0 chrXVI 382213 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.48;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1204,135,0 chrXVI 382287 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.47;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1746,195,0 chrXVI 382450 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2487,294,0 chrXVI 382832 . C A 2870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.0106;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.350;QD=22.60;ReadPosRankSum=-0.887;SB=-1.543e+03 GT:AD:DP:GQ:PL 1/1:1,126:127:99:2903,312,0 chrXVI 383361 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=3.551;HaplotypeScore=8.3674;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.358;QD=18.92;ReadPosRankSum=1.701;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2133,240,0 chrXVI 383919 . C T 1310 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.85;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1343,147,0 chrXVI 383928 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.58;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1371,150,0 chrXVI 385957 . A G 2691 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0044;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.36;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,139:139:99:2724,309,0 chrXVI 386168 . T C 2005 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.74;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2038,237,0 chrXVI 386645 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.23;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1099,123,0 chrXVI 386960 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.42;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1470,159,0 chrXVI 386966 . T G 1322 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=2.827;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.746;QD=16.12;ReadPosRankSum=2.359;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1355,153,0 chrXVI 387009 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.6071;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.85;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1586,174,0 chrXVI 387206 . A G 1581 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.27;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1614,180,0 chrXVI 387418 . T C 2574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=130;Dels=0.00;FS=2.620;HaplotypeScore=15.2217;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.992;QD=19.80;ReadPosRankSum=2.392;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:2,127:130:99:2607,288,0 chrXVI 387550 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.57;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1864,213,0 chrXVI 387715 . C T 2868 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.51;SB=-1.305e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2901,312,0 chrXVI 388066 . A G 1737 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=6.502;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.396;QD=20.68;ReadPosRankSum=2.391;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1770,201,0 chrXVI 388170 . G C 1268 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.81;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1301,150,0 chrXVI 388241 . T A 1482 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1515,168,0 chrXVI 388417 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.62;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1390,159,0 chrXVI 388527 . A C 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.68;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1563,180,0 chrXVI 388558 . A G 1139 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.09;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1172,132,0 chrXVI 388806 . A G 2032 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.09;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2065,237,0 chrXVI 388922 . A T 1074 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.53;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1107,120,0 chrXVI 389144 . A T 1722 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.92;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1755,195,0 chrXVI 389519 . T C 1617 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.28;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1650,192,0 chrXVI 389644 . T A 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.271;DP=96;Dels=0.00;FS=9.313;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.825;QD=18.18;ReadPosRankSum=3.308;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:4,92:96:99:1778,192,0 chrXVI 389708 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.35;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:84:99:1658,180,0 chrXVI 389788 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5083;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.60;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2203,240,0 chrXVI 389821 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6595;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.59;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1620,183,0 chrXVI 389951 . T C 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.641;QD=20.49;ReadPosRankSum=1.687;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1590,180,0 chrXVI 390540 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.10;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1239,144,0 chrXVI 390636 . C T 1312 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.87;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1345,147,0 chrXVI 391587 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2106,228,0 chrXVI 391638 . C T 2453 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.71;SB=-1.467e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2486,270,0 chrXVI 392179 . A G 2330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=123;Dels=0.00;FS=8.993;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.490;QD=18.94;ReadPosRankSum=2.330;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:2,121:123:99:2363,273,0 chrXVI 392183 . A G 2357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=4.591;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.439;QD=19.97;ReadPosRankSum=1.615;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2390,267,0 chrXVI 392213 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.72;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1681,189,0 chrXVI 392272 . A G 1474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.594;QD=19.39;ReadPosRankSum=1.686;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1507,171,0 chrXVI 392460 . G A 2681 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.16;SB=-1.551e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2714,294,0 chrXVI 392874 . A G 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.389;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.8335;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.326;QD=20.05;ReadPosRankSum=1.629;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:1,100:102:99:2078,218,0 chrXVI 393285 . T C 1699 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3843;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.692;QD=18.88;ReadPosRankSum=1.692;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,85:90:99:1732,198,0 chrXVI 393808 . T A 1544 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.75;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1577,174,0 chrXVI 394093 . A G 1463 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.20;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1496,168,0 chrXVI 394211 . A G 1275 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.704;QD=19.92;ReadPosRankSum=1.678;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1308,147,0 chrXVI 394424 . C T 1457 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.13;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1490,159,0 chrXVI 394442 . T A 1272 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.93;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1305,141,0 chrXVI 396203 . A G 1024 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.33;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,45:48:99:1057,123,0 chrXVI 396929 . G T 454 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.21;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:487,54,0 chrXVI 397572 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.69;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1352,147,0 chrXVI 397584 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.04;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1226,138,0 chrXVI 397587 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=16.74;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1255,135,0 chrXVI 398362 . G A 2886 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2919,321,0 chrXVI 398561 . G A 1598 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1631,177,0 chrXVI 398626 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1886,204,0 chrXVI 400049 . G A 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.1071;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.462;QD=21.77;ReadPosRankSum=0.974;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1426,153,0 chrXVI 400178 . A G 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.263;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.373;QD=22.29;ReadPosRankSum=1.699;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2396,273,0 chrXVI 401426 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.56;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1872,201,0 chrXVI 401621 . A G 2563 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.4591;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.18;SB=-1.499e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2596,291,0 chrXVI 402100 . G A 1652 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.15;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1685,183,0 chrXVI 402323 . C T 1643 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0515;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.62;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1676,183,0 chrXVI 402769 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.67;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1233,141,0 chrXVI 402848 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.92;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1611,183,0 chrXVI 402947 . A G 2785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=4.517;HaplotypeScore=8.4234;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.090;QD=23.60;ReadPosRankSum=1.702;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:1,115:118:99:2818,324,0 chrXVI 403004 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.29;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1630,180,0 chrXVI 403061 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.15;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1650,180,0 chrXVI 403097 . G A 1385 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.67;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1418,159,0 chrXVI 403300 . G T 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;DP=98;Dels=0.00;FS=138.385;HaplotypeScore=11.4333;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=-0.243;QD=1.64;ReadPosRankSum=-4.457;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:76,22:98:99:191,0,940 chrXVI 403383 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.33;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1274,138,0 chrXVI 403562 . T C 1709 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.80;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1742,198,0 chrXVI 403568 . A T 1721 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.032;QD=17.38;ReadPosRankSum=2.325;SB=-1.174e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:1754,192,0 chrXVI 403691 . C T 1716 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.28;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1749,192,0 chrXVI 403823 . A G 1196 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6968;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.27;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1229,144,0 chrXVI 403919 . C A 1316 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.35;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1349,150,0 chrXVI 404106 . A G 1315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1100;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.197;QD=14.94;ReadPosRankSum=1.693;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1348,153,0 chrXVI 404554 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.82;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1361,153,0 chrXVI 404634 . C A 601 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=4.4961;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.41;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:634,69,0 chrXVI 404753 . C T 55.97 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=5.60;SB=-1.158e+02 GT:AD:DP:GQ:PL 1/1:0,10:10:9:88,9,0 chrXVI 404878 . T C 149.06 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=10.65;SB=-8.006e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:21:182,21,0 chrXVI 404886 . C T 153.06 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=12.76;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,12:12:21:186,21,0 chrXVI 404989 . G A 456 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.71;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:57:489,57,0 chrXVI 405324 . C T 1122 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.39;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1155,126,0 chrXVI 405627 . G A 1978 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.00;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2011,225,0 chrXVI 405804 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.1488;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.58;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2083,237,0 chrXVI 405840 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.97;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1418,156,0 chrXVI 405846 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.37;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1505,165,0 chrXVI 406204 . A T 2647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=117;Dels=0.00;FS=6.255;HaplotypeScore=14.3234;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.580;QD=22.62;ReadPosRankSum=1.671;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,116:117:99:2680,300,0 chrXVI 406247 . A G 2611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=16.166;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.338;QD=23.11;ReadPosRankSum=2.384;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2644,300,0 chrXVI 406317 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.57;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1658,183,0 chrXVI 406369 . T C 1832 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.422;QD=21.81;ReadPosRankSum=1.690;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:1,81:83:99:1865,210,0 chrXVI 406822 . G A 1620 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=76.7747;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.00;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1653,183,0 chrXVI 406902 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.13;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2146,240,0 chrXVI 406922 . G T 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.52;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,96:100:99:2185,237,0 chrXVI 406979 . T C 2881 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.50;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2914,327,0 chrXVI 407033 . T C 1949 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.39;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1982,222,0 chrXVI 407036 . G A 1833 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=24.1789;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=16.66;SB=-1.232e+03 GT:AD:DP:GQ:PL 1/1:0,106:108:99:1866,201,0 chrXVI 407308 . C T 2958 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.6746;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.07;SB=-1.635e+03 GT:AD:DP:GQ:PL 1/1:0,133:134:99:2991,327,0 chrXVI 407712 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.17;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1527,177,0 chrXVI 408303 . G A 1144 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.07;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1177,129,0 chrXVI 408319 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.54;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1225,135,0 chrXVI 408439 . A T 1374 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.47;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1407,153,0 chrXVI 408835 . T C 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-1.266;QD=18.94;ReadPosRankSum=1.666;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1018,117,0 chrXVI 408842 . C T 1025 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.67;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1058,114,0 chrXVI 408877 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=14.99;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1157,126,0 chrXVI 408889 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.99;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1072,117,0 chrXVI 408904 . A T 1114 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=15.05;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1147,123,0 chrXVI 408946 . G A 1394 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0737;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=14.99;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1427,162,0 chrXVI 408975 . G A 1402 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.21;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1435,159,0 chrXVI 409216 . G A 2130 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.66;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2163,234,0 chrXVI 409345 . C T 2503 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.5667;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.86;SB=-1.274e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2536,279,0 chrXVI 409644 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.0727;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.47;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,122:124:99:2571,285,0 chrXVI 409707 . A G 2440 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=122;Dels=0.00;FS=3.229;HaplotypeScore=7.4763;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.256;QD=20.00;ReadPosRankSum=1.704;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,121:122:99:2473,282,0 chrXVI 410004 . G C 1305 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.64;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1338,153,0 chrXVI 410778 . A T 3183 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:3216,357,0 chrXVI 410844 . A G 2282 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.53;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2315,261,0 chrXVI 411358 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1382,147,0 chrXVI 411512 . C T 1500 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.52;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1533,165,0 chrXVI 411579 . G A 1491 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.93;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1524,165,0 chrXVI 411924 . G A 1877 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9106;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.09;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1910,207,0 chrXVI 412217 . A G 1267 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.49;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1300,144,0 chrXVI 413187 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=13.6015;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.83;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1598,174,0 chrXVI 413248 . A G 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.575;QD=18.24;ReadPosRankSum=1.575;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1255,141,0 chrXVI 413894 . T A 1681 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.03;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1714,189,0 chrXVI 414498 . A C 1533 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.70;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1566,177,0 chrXVI 414828 . G A 1374 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1407,153,0 chrXVI 414884 . A G 1596 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.472;QD=20.73;ReadPosRankSum=1.552;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1629,180,0 chrXVI 415343 . G A 644 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.77;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:75:677,75,0 chrXVI 415490 . T G 597 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:72:630,72,0 chrXVI 415608 . T C 917 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:99:950,108,0 chrXVI 415720 . G A 331 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.69;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:39:364,39,0 chrXVI 415744 . C T 310 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.50;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:39:343,39,0 chrXVI 416011 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.10;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1408,162,0 chrXVI 416247 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.81;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1557,177,0 chrXVI 416425 . T A 2064 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.85;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2097,240,0 chrXVI 416451 . A G 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.669;QD=20.69;ReadPosRankSum=1.653;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1854,216,0 chrXVI 416547 . G A 1099 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.62;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1132,123,0 chrXVI 417505 . T C 1741 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.98;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1774,204,0 chrXVI 418090 . T C 599 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.97;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:632,69,0 chrXVI 418123 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.14;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1111,123,0 chrXVI 418215 . T C 1400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.271;QD=21.21;ReadPosRankSum=1.678;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:1,63:66:99:1433,159,0 chrXVI 419190 . A C 1725 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1366;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.96;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1758,201,0 chrXVI 419444 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.55;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1636,177,0 chrXVI 419531 . A G 1341 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.63;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1374,159,0 chrXVI 420042 . A G 1760 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=5.283;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.748;QD=21.46;ReadPosRankSum=1.604;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,80:82:99:1793,204,0 chrXVI 420351 . A G 1720 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4127;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.387;QD=16.54;ReadPosRankSum=1.698;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,102:104:99:1753,201,0 chrXVI 420360 . A G 1633 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;MQRankSum=-0.472;QD=16.49;ReadPosRankSum=1.697;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:1666,192,0 chrXVI 420386 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=14.59;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1594,177,0 chrXVI 420405 . A G 1390 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=-0.979;QD=14.95;ReadPosRankSum=1.694;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1423,162,0 chrXVI 420721 . A G 1235 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.00;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1268,144,0 chrXVI 421121 . A C 1119 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.29;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1152,132,0 chrXVI 421124 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.92;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1144,126,0 chrXVI 422582 . T G 1205 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.74;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1238,144,0 chrXVI 422588 . A G 1132 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=16.17;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1165,135,0 chrXVI 422730 . T C 1799 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=5.393;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.385;QD=19.77;ReadPosRankSum=1.694;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1832,204,0 chrXVI 423170 . G A 1660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0209;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.640;QD=21.84;ReadPosRankSum=1.363;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1693,183,0 chrXVI 423212 . C T 1531 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.97;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1564,168,0 chrXVI 423638 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.40;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1702,183,0 chrXVI 423898 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.75;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1599,180,0 chrXVI 423962 . G T 1228 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.49;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1261,138,0 chrXVI 424091 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1316,147,0 chrXVI 424137 . G A 1378 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1411,150,0 chrXVI 424230 . G A 1555 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.46;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1588,174,0 chrXVI 424350 . G T 124.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;DP=72;Dels=0.00;FS=136.561;HaplotypeScore=21.7653;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=-0.306;QD=1.72;ReadPosRankSum=-2.880;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:45,25:72:99:154,0,641 chrXVI 424365 . A G 1038 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.186;DP=61;Dels=0.00;FS=2.408;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.015;QD=17.02;ReadPosRankSum=3.215;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:4,57:61:99:1071,123,0 chrXVI 424542 . T C 770 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.74;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:803,93,0 chrXVI 424578 . G A 845 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.37;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:878,96,0 chrXVI 424851 . T C 2056 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.63;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2089,237,0 chrXVI 424858 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.74;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1568,180,0 chrXVI 425055 . T C 741 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=10.74;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:90:774,90,0 chrXVI 425121 . G A 2659 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.86;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2692,294,0 chrXVI 425242 . A G 1025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.977;DP=91;Dels=0.00;FS=1.383;HaplotypeScore=22.8867;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.070;QD=11.26;ReadPosRankSum=1.230;SB=-8.259e+02 GT:AD:DP:GQ:PL 1/1:9,82:91:94:1058,94,0 chrXVI 425440 . C T 1294 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=19.03;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1327,144,0 chrXVI 425451 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=16.61;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1146,129,0 chrXVI 425480 . T G 828 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=12.55;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:861,99,0 chrXVI 425481 . C T 870 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=13.18;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:903,99,0 chrXVI 425511 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9581;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=14.62;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1451,159,0 chrXVI 425530 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.0712;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=15.78;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1721,186,0 chrXVI 425740 . A G 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.168;QD=21.07;ReadPosRankSum=1.571;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:939,105,0 chrXVI 425761 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.67;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:892,99,0 chrXVI 425880 . G A 1154 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.32;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1187,132,0 chrXVI 425899 . C A 1007 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=14.39;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1040,114,0 chrXVI 425902 . G A 1019 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=14.56;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1052,117,0 chrXVI 425909 . T C 1049 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=14.57;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1082,120,0 chrXVI 426505 . C T 2099 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.64;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2132,234,0 chrXVI 426676 . T C 1462 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.82;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1495,171,0 chrXVI 426889 . A G 1477 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.253;QD=18.01;ReadPosRankSum=1.690;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1510,168,0 chrXVI 427075 . C T 870 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.77;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:903,96,0 chrXVI 427120 . G A 1059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=55;Dels=0.00;FS=3.707;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.128;QD=19.25;ReadPosRankSum=1.604;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1092,120,0 chrXVI 427238 . G T 1201 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4053;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1234,135,0 chrXVI 427600 . T C 584 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:617,72,0 chrXVI 427708 . G A 1057 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.54;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1090,117,0 chrXVI 427730 . C A 938 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.37;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:971,105,0 chrXVI 428058 . T C 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.585;QD=18.65;ReadPosRankSum=2.322;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1469,171,0 chrXVI 428065 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=19.07;SB=-1.580e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1711,189,0 chrXVI 428478 . G A 1743 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.81;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1776,195,0 chrXVI 428616 . A G 2149 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.280;QD=19.54;ReadPosRankSum=2.338;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:2,108:110:99:2182,249,0 chrXVI 428822 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.93;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1612,177,0 chrXVI 428880 . A G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.066;QD=20.36;ReadPosRankSum=1.643;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1621,183,0 chrXVI 428900 . T C 1363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.481;QD=18.93;ReadPosRankSum=1.684;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1396,159,0 chrXVI 428908 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.60;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1516,165,0 chrXVI 429203 . A T 2573 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.18;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2606,291,0 chrXVI 429659 . G T 1875 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5159;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.53;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1908,204,0 chrXVI 429951 . T C 881 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.02;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:914,102,0 chrXVI 430062 . T G 936 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=16.42;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:969,114,0 chrXVI 430071 . A G 926 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.15;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:959,108,0 chrXVI 430119 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.72;SB=-1.037e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1896,204,0 chrXVI 430271 . G A 1789 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.94;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1822,195,0 chrXVI 430826 . T C 2537 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.32;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2570,291,0 chrXVI 431177 . T C 1395 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.080;QD=20.51;ReadPosRankSum=1.572;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:1,64:68:99:1428,162,0 chrXVI 431368 . A G 1084 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=3.053;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.764;QD=17.21;ReadPosRankSum=2.372;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1117,129,0 chrXVI 431481 . T A 1409 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.35;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1442,156,0 chrXVI 431631 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=51.6580;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.593;QD=20.22;ReadPosRankSum=1.687;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1590,180,0 chrXVI 431680 . G T 916 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=16.96;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:949,102,0 chrXVI 431694 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=11.57;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:81:727,81,0 chrXVI 431714 . T C 755 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=12.18;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:90:788,90,0 chrXVI 431737 . G A 687 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=9.54;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:81:720,81,0 chrXVI 431744 . C T 602 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=8.25;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:69:635,69,0 chrXVI 431837 . G T 1052 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=15.03;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1085,117,0 chrXVI 431838 . A T 1047 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=72;Dels=0.00;FS=6.113;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-1.155;QD=14.54;ReadPosRankSum=2.705;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:3,69:72:99:1080,117,0 chrXVI 432226 . C G 2131 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.97;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2164,243,0 chrXVI 432268 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.86;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2015,234,0 chrXVI 432288 . A C 1761 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.96;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1794,201,0 chrXVI 432881 . C T 2488 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.798;DP=142;Dels=0.00;FS=4.010;HaplotypeScore=5.8793;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.774;QD=17.52;ReadPosRankSum=-0.012;SB=-1.286e+03 GT:AD:DP:GQ:PL 1/1:1,141:142:99:2521,256,0 chrXVI 432902 . C T 2583 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=10.0475;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.22;SB=-1.399e+03 GT:AD:DP:GQ:PL 1/1:0,150:150:99:2616,285,0 chrXVI 433481 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.00;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2255,252,0 chrXVI 434418 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.70;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1053,120,0 chrXVI 436158 . T C 1969 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:2002,225,0 chrXVI 436358 . T C 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=8.988;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.628;QD=18.71;ReadPosRankSum=2.369;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:2,59:62:99:1193,132,0 chrXVI 436359 . T C 1168 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.15;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1201,135,0 chrXVI 436465 . A C 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.834;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.691;QD=21.08;ReadPosRankSum=2.224;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:2,96:100:99:2141,243,0 chrXVI 436525 . T C 2070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=1.585;QD=21.79;ReadPosRankSum=1.695;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2103,243,0 chrXVI 442759 . A T 45.97 filter AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.05;MQ0=65;QD=0.60;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:2,75:77:9:78,9,0 chrXVI 443033 . G T 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.92;MQ0=77;MQRankSum=3.034;QD=0.93;ReadPosRankSum=-1.485;SB=-8.690e-03 GT:AD:DP:GQ:PL 0/1:21,70:91:30:115,0,30 chrXVI 443034 . T G 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.034;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.92;MQ0=77;MQRankSum=3.034;QD=0.86;ReadPosRankSum=-1.743;SB=-7.065e-03 GT:AD:DP:GQ:PL 0/1:21,68:91:36:108,0,36 chrXVI 443164 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=0;QD=17.15;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1371,147,0 chrXVI 443170 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=16.89;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1401,153,0 chrXVI 443226 . C T 2157 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-1.092;QD=18.13;ReadPosRankSum=-0.015;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2190,243,0 chrXVI 443264 . A T 2236 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=18.95;SB=-1.416e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2269,249,0 chrXVI 443279 . G T 2140 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=18.29;SB=-1.433e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2173,240,0 chrXVI 443354 . C G 2585 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=22.28;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,113:116:99:2618,294,0 chrXVI 443445 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.18;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1685,180,0 chrXVI 443451 . A T 1342 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.66;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1375,150,0 chrXVI 443461 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=17.99;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1544,174,0 chrXVI 443636 . A G 2590 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.04;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2623,297,0 chrXVI 443638 . G C 2615 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.95;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2648,306,0 chrXVI 443969 . G C 1944 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.84;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1977,222,0 chrXVI 444118 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,74:77:99:1442,159,0 chrXVI 444387 . T C 1592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.594;QD=21.23;ReadPosRankSum=1.640;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1625,183,0 chrXVI 446280 . A T 1967 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.35;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2000,219,0 chrXVI 446391 . C T 2322 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.37;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2355,255,0 chrXVI 446457 . T C 2222 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6426;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.02;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2255,264,0 chrXVI 446931 . T C 2067 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.97;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2100,237,0 chrXVI 447294 . G T 2513 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=11.1719;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.18;SB=-1.641e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2546,279,0 chrXVI 447597 . A G 1891 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=122;Dels=0.00;FS=6.201;HaplotypeScore=9.4460;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.433;QD=15.50;ReadPosRankSum=2.248;SB=-1.454e+03 GT:AD:DP:GQ:PL 1/1:2,120:122:99:1924,219,0 chrXVI 448089 . T C 2204 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1505;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;MQRankSum=-1.404;QD=19.00;ReadPosRankSum=1.702;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:1,115:116:99:2237,249,0 chrXVI 448559 . T C 2409 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.510;QD=21.90;ReadPosRankSum=1.700;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:1,108:110:99:2442,276,0 chrXVI 448839 . G C 1731 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.13;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1764,207,0 chrXVI 448989 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.36;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1458,159,0 chrXVI 449016 . A G 1030 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.76;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1063,120,0 chrXVI 449109 . A G 735 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=2.623;HaplotypeScore=5.4765;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.480;QD=14.41;ReadPosRankSum=2.354;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:90:768,90,0 chrXVI 449133 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=16.40;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:62:99:1050,114,0 chrXVI 449172 . C T 918 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.86;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:951,105,0 chrXVI 449463 . G A 1748 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.62;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1781,189,0 chrXVI 450160 . T C 2004 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.02;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2037,237,0 chrXVI 450382 . T G 1616 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.01;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,92:95:99:1649,192,0 chrXVI 450386 . T C 1811 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.93;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1844,213,0 chrXVI 450430 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.31;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1520,165,0 chrXVI 450581 . C A 2153 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.75;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2186,237,0 chrXVI 450611 . T C 2012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.306;QD=23.67;ReadPosRankSum=1.691;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:2045,228,0 chrXVI 450655 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.01;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1662,192,0 chrXVI 450675 . C T 1626 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.90;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1659,177,0 chrXVI 450731 . T A 1489 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.90;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1522,165,0 chrXVI 451153 . T G 598 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=10.87;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:631,75,0 chrXVI 451219 . T C 559 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.28;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:66:592,66,0 chrXVI 451247 . T C 574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=32;Dels=0.00;FS=8.893;HaplotypeScore=3.5654;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.509;QD=17.94;ReadPosRankSum=1.621;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:1,30:32:69:607,69,0 chrXVI 451317 . A G 394 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=15.76;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,25:25:48:427,48,0 chrXVI 451383 . C G 378 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=17.18;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:48:411,48,0 chrXVI 451450 . C T 489 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=11.64;SB=-6.537e-03 GT:AD:DP:GQ:PL 1/1:0,41:42:57:522,57,0 chrXVI 451451 . C T 448 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=10.93;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,40:41:54:481,54,0 chrXVI 451703 . G T 177.03 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=13.62;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,13:13:24:210,24,0 chrXVI 451866 . A G 1776 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.96;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1809,204,0 chrXVI 451892 . G A 1437 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=12.95;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1470,168,0 chrXVI 451895 . G C 1597 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=14.13;SB=-1.282e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1630,186,0 chrXVI 452126 . C T 1606 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.86;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1639,177,0 chrXVI 452140 . A G 1736 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.08;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1769,207,0 chrXVI 452203 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.0477;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.54;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1909,213,0 chrXVI 452400 . G C 2037 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.37;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,98:100:99:2070,228,0 chrXVI 452569 . T C 2803 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.7546;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.55;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2836,318,0 chrXVI 452674 . G A 2700 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.13;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2733,291,0 chrXVI 452854 . G A 1919 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.00;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1952,213,0 chrXVI 452935 . C T 2066 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8342;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=16.93;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,120:122:99:2099,228,0 chrXVI 452986 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.03;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2176,234,0 chrXVI 453031 . G T 1670 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9410;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.35;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1703,192,0 chrXVI 453508 . C T 720 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=24.83;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:753,81,0 chrXVI 453659 . G A 128.13 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=5.34;SB=-2.121e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:18:161,18,0 chrXVI 453873 . C T 659 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=14.98;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:75:692,75,0 chrXVI 454184 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=17.89;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,98:101:99:1840,201,0 chrXVI 454517 . A G 1914 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=4.633;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.360;QD=20.36;ReadPosRankSum=1.695;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,92:94:99:1947,225,0 chrXVI 454578 . T G 1521 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=13.46;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1554,177,0 chrXVI 454587 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.82;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1752,189,0 chrXVI 454868 . A G 1216 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.189;DP=86;Dels=0.00;FS=2.846;HaplotypeScore=10.5676;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.826;QD=14.14;ReadPosRankSum=2.334;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1249,144,0 chrXVI 454958 . T C 1655 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=97;Dels=0.00;FS=3.056;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.090;QD=17.06;ReadPosRankSum=1.732;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:2,94:97:99:1688,195,0 chrXVI 455063 . G C 1983 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=94.3383;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=17.86;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2016,231,0 chrXVI 455086 . A G 1062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=53.9466;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-0.866;QD=14.75;ReadPosRankSum=1.636;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1095,123,0 chrXVI 455359 . T A 1484 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.32;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1517,165,0 chrXVI 455657 . A G 390 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.16;MQ0=0;QD=15.00;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:48:423,48,0 chrXVI 455724 . T C 529 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;MQRankSum=-0.867;QD=18.89;ReadPosRankSum=1.609;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:1,27:28:66:562,66,0 chrXVI 455725 . T A 560 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;MQRankSum=-2.281;QD=18.67;ReadPosRankSum=2.281;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:2,28:30:66:593,66,0 chrXVI 455737 . A C 720 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=18.46;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,37:39:87:753,87,0 chrXVI 455846 . T C 628 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.26;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:661,75,0 chrXVI 455851 . A G 596 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.23;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:72:629,72,0 chrXVI 455955 . G A 1143 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.32;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1176,129,0 chrXVI 456456 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.35;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1997,213,0 chrXVI 456568 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.41;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1639,183,0 chrXVI 456631 . T C 1072 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=5.315;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.529;QD=20.62;ReadPosRankSum=1.597;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1105,123,0 chrXVI 456878 . T A 329 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.95;SB=-7.604e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:39:362,39,0 chrXVI 456975 . T A 174.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=14.50;SB=-5.303e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:207,24,0 chrXVI 457330 . G A 906 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.17;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:939,102,0 chrXVI 457391 . C T 1205 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.31;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1238,132,0 chrXVI 457634 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.20;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1052,120,0 chrXVI 458206 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.87;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,134:134:99:2964,324,0 chrXVI 458279 . C T 2956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.2357;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.275;QD=20.39;ReadPosRankSum=0.241;SB=-1.616e+03 GT:AD:DP:GQ:PL 1/1:1,143:145:99:2989,324,0 chrXVI 458635 . G C 1513 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.9683;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.23;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1546,177,0 chrXVI 458921 . A G 1306 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.921;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.440;QD=22.14;ReadPosRankSum=1.674;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1339,156,0 chrXVI 458976 . G A 1721 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1754,192,0 chrXVI 459034 . A G 2004 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.229;QD=16.16;ReadPosRankSum=1.369;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,123:124:99:2037,234,0 chrXVI 459330 . T G 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3045;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.476;QD=20.72;ReadPosRankSum=1.646;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1691,192,0 chrXVI 459604 . A G 1154 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.98;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1187,132,0 chrXVI 459802 . A G 1535 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.62;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1568,183,0 chrXVI 459929 . A G 1979 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0439;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.75;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:2012,225,0 chrXVI 460151 . C G 1602 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1635,189,0 chrXVI 460340 . A G 2534 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.028;QD=19.80;ReadPosRankSum=1.705;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,127:128:99:2567,297,0 chrXVI 460602 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=20.26;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1188,141,0 chrXVI 460761 . T C 4421.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.577;QD=25.41;ReadPosRankSum=1.692;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,173:174:99:4421,501,0 chrXVI 461198 . T C 2444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=130;Dels=0.00;FS=18.427;HaplotypeScore=15.2680;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.840;QD=18.80;ReadPosRankSum=3.391;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:4,126:130:99:2477,285,0 chrXVI 462319 . A G 949 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:982,111,0 chrXVI 462756 . T C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.541;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=14.3422;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.745;QD=16.88;ReadPosRankSum=1.194;SB=-1.129e+03 GT:AD:DP:GQ:PL 1/1:3,96:100:99:1738,195,0 chrXVI 462811 . A G 1130 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=3.206;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.248;QD=8.13;ReadPosRankSum=1.707;SB=-1.692e+03 GT:AD:DP:GQ:PL 1/1:1,135:139:99:1163,135,0 chrXVI 462936 . C T 2761 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-1.812e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2794,306,0 chrXVI 463061 . T C 2119 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-1.318e+03 GT:AD:DP:GQ:PL 1/1:0,110:112:99:2152,246,0 chrXVI 463543 . G A 940 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.21;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:973,111,0 chrXVI 464194 . A G 794 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.18;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:827,93,0 chrXVI 464368 . G C 1229 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.48;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1262,144,0 chrXVI 464559 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1367,156,0 chrXVI 464655 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.84;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1955,225,0 chrXVI 466009 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.63;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,99:102:99:2035,225,0 chrXVI 466327 . A G 1449 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.34;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1482,171,0 chrXVI 466437 . A G 1686 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=2.606;HaplotypeScore=3.6203;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.511;QD=17.38;ReadPosRankSum=2.907;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,94:97:99:1719,195,0 chrXVI 466981 . G A 1514 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8618;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.03;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1547,168,0 chrXVI 467087 . G C 1021 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1054,120,0 chrXVI 467814 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.73;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1692,183,0 chrXVI 467898 . G A 1268 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1301,141,0 chrXVI 468177 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.28;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2128,231,0 chrXVI 468512 . A C 1698 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.74;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1731,204,0 chrXVI 468582 . G T 2048 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2081,231,0 chrXVI 468648 . C G 2045 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.78;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2078,231,0 chrXVI 469012 . C A 2330 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.98;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2363,258,0 chrXVI 469401 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.82;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:72:99:1460,171,0 chrXVI 469693 . C T 1101 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.17;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1134,126,0 chrXVI 469730 . G C 1038 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.62;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1071,123,0 chrXVI 469874 . A G 2188 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=6.114;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.032;QD=23.03;ReadPosRankSum=1.695;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:2221,255,0 chrXVI 470025 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.43;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1837,210,0 chrXVI 470379 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:2001,216,0 chrXVI 470595 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.610;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.112;QD=20.68;ReadPosRankSum=1.676;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:1,61:63:99:1336,156,0 chrXVI 470860 . C G 1621 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.83;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1654,189,0 chrXVI 471579 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=3.949;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.192;QD=19.78;ReadPosRankSum=1.684;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1477,174,0 chrXVI 471891 . A G 1433 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1466,168,0 chrXVI 472093 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2025,225,0 chrXVI 472696 . A C 1895 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.29;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1928,219,0 chrXVI 472825 . T C 795 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:828,90,0 chrXVI 472894 . G T 926 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:959,102,0 chrXVI 472929 . A G 890 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:923,105,0 chrXVI 473241 . C A 903 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.00;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:936,105,0 chrXVI 473286 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.65;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1137,132,0 chrXVI 473391 . T C 2174 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2207,252,0 chrXVI 473481 . A G 1402 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.95;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1435,171,0 chrXVI 473594 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8217;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.00;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1727,183,0 chrXVI 473877 . A C 1484 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.381;QD=21.51;ReadPosRankSum=1.682;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1517,171,0 chrXVI 473940 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.9460;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.51;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1469,159,0 chrXVI 474003 . T C 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.083;QD=20.33;ReadPosRankSum=1.624;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1334,156,0 chrXVI 474237 . C T 1579 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.56;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1612,174,0 chrXVI 474526 . C T 2023 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.6536;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.03;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2056,222,0 chrXVI 474750 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.93;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1434,165,0 chrXVI 474808 . T C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.031;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=8.8278;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.606;QD=19.11;ReadPosRankSum=1.102;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1084,123,0 chrXVI 475318 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.48;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:77:99:1533,174,0 chrXVI 475796 . A T 1602 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1635,177,0 chrXVI 476694 . C G 1040 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.62;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1073,123,0 chrXVI 476811 . G A 1027 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=13.88;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1060,114,0 chrXVI 476826 . G A 828 SnpCluster AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=12.00;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:93:861,93,0 chrXVI 476833 . T C 741 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=11.23;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:87:774,87,0 chrXVI 476836 . T C 752 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=2.685;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;MQRankSum=-2.001;QD=11.39;ReadPosRankSum=2.375;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:90:785,90,0 chrXVI 476851 . A T 668 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;QD=11.13;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:75:701,75,0 chrXVI 477202 . A T 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.652;QD=21.76;ReadPosRankSum=1.147;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,76:78:99:1730,173,0 chrXVI 477481 . C G 1934 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.73;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1967,222,0 chrXVI 477500 . G A 2027 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.07;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2060,231,0 chrXVI 477628 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.87;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1783,192,0 chrXVI 478120 . G A 2148 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.1726;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.07;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2181,237,0 chrXVI 478141 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.24;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1842,198,0 chrXVI 478144 . A T 1688 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.15;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1721,192,0 chrXVI 478277 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.42;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:60:99:958,108,0 chrXVI 478288 . T C 795 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.72;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:96:828,96,0 chrXVI 478294 . T C 775 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=14.90;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:93:808,93,0 chrXVI 478657 . G A 1085 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.79;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1118,126,0 chrXVI 478714 . G A 1330 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.78;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1363,159,0 chrXVI 479396 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.38;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1480,168,0 chrXVI 479406 . G A 1595 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1546;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.45;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1628,177,0 chrXVI 479515 . T C 2350 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.82;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2383,273,0 chrXVI 479677 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3243;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.52;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2353,255,0 chrXVI 479826 . C T 2554 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=13.5130;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.60;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,121:124:99:2587,285,0 chrXVI 479920 . A C 2359 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.50;SB=-1.494e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2392,279,0 chrXVI 479932 . G T 2292 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.34;SB=-1.428e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2325,258,0 chrXVI 480383 . T A 826 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:859,93,0 chrXVI 480441 . T G 1122 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.106;QD=22.44;ReadPosRankSum=1.662;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:1,48:50:99:1155,129,0 chrXVI 480510 . C T 1591 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=71.0661;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.94;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1624,180,0 chrXVI 480568 . A C 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=8.498;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.753;QD=18.88;ReadPosRankSum=1.694;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:1,91:94:99:1808,210,0 chrXVI 480795 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=2.676;HaplotypeScore=9.6509;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.384;QD=21.59;ReadPosRankSum=2.399;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2127,246,0 chrXVI 481072 . T G 1552 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.64;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1585,177,0 chrXVI 481833 . A G 1557 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.791;QD=19.22;ReadPosRankSum=1.689;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1590,180,0 chrXVI 482212 . G A 1136 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.65;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1169,126,0 chrXVI 482489 . G A 1196 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=61.44;MQ0=0;QD=23.00;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1229,138,0 chrXVI 482966 . A T 859 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=13.22;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:96:892,96,0 chrXVI 482968 . T G 789 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=11.95;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:96:822,96,0 chrXVI 483004 . G A 516 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=5.93;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:63:549,63,0 chrXVI 483298 . T G 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.768;QD=21.43;ReadPosRankSum=1.661;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2133,249,0 chrXVI 483319 . T A 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=0.125;QD=20.78;ReadPosRankSum=1.625;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2090,231,0 chrXVI 483355 . T C 1553 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=93;Dels=0.00;FS=2.957;HaplotypeScore=4.4838;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.174;QD=16.70;ReadPosRankSum=2.396;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,90:93:99:1586,189,0 chrXVI 483359 . G T 1755 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4169;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.47;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1788,195,0 chrXVI 483577 . T C 2242 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.68;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,118:120:99:2275,264,0 chrXVI 483679 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=19.12;SB=-1.203e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2021,231,0 chrXVI 483691 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.67;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1900,210,0 chrXVI 483697 . T C 1699 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.82;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1732,198,0 chrXVI 483904 . T C 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=111;Dels=0.00;FS=2.864;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-2.184;QD=20.64;ReadPosRankSum=2.405;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2324,270,0 chrXVI 483961 . G C 2199 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.2253;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.81;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2232,255,0 chrXVI 484249 . G A 2191 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3212;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.13;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2224,252,0 chrXVI 484285 . C T 1812 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.0021;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.70;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1845,201,0 chrXVI 484357 . C T 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1518,165,0 chrXVI 484429 . T C 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.346;QD=20.73;ReadPosRankSum=1.689;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1712,195,0 chrXVI 485045 . C T 1922 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.2548;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.45;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1955,213,0 chrXVI 485132 . A G 2544 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.199e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2577,288,0 chrXVI 485788 . T G 1382 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7096;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.529;QD=19.19;ReadPosRankSum=1.684;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1415,162,0 chrXVI 485801 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.08;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1298,141,0 chrXVI 485814 . C T 1171 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.20;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1204,132,0 chrXVI 485873 . T G 1131 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.20;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1164,132,0 chrXVI 485898 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.64;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1353,144,0 chrXVI 485927 . C G 245 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.930;DP=53;Dels=0.00;FS=8.640;HaplotypeScore=32.1087;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=2.883;QD=4.62;ReadPosRankSum=-1.531;SB=3.00 GT:AD:DP:GQ:PL 1/1:35,18:53:33:278,33,0 chrXVI 485964 . C T 868 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.8729;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=12.23;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:901,99,0 chrXVI 486011 . C A 787 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;QD=13.12;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:93:820,93,0 chrXVI 486595 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=109;Dels=0.00;FS=2.918;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.689;QD=20.95;ReadPosRankSum=2.405;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2317,270,0 chrXVI 486646 . G A 2357 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.57;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2390,258,0 chrXVI 486771 . T C 1347 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.72;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1380,153,0 chrXVI 486789 . T G 1344 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.93;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1377,159,0 chrXVI 486969 . A T 1711 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6331;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.94;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1744,189,0 chrXVI 487204 . C T 830 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.04;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:863,93,0 chrXVI 487209 . G C 765 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.79;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:798,93,0 chrXVI 487228 . G A 1018 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.85;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1051,120,0 chrXVI 487322 . C T 1804 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5996;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.73;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1837,198,0 chrXVI 487872 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1154,126,0 chrXVI 487935 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.52;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1468,159,0 chrXVI 488079 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1494,162,0 chrXVI 489543 . G A 2430 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.37;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2463,261,0 chrXVI 490135 . G A 508 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=6.86;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:60:541,60,0 chrXVI 490450 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.76;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1258,138,0 chrXVI 490554 . G A 1431 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.71;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1464,162,0 chrXVI 490756 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1601,174,0 chrXVI 490848 . T C 1664 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.49;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1697,192,0 chrXVI 490906 . T C 1479 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.49;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1512,171,0 chrXVI 491113 . G A 1547 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.34;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1580,177,0 chrXVI 491370 . T G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=5.075;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.592;QD=17.54;ReadPosRankSum=1.639;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1366,156,0 chrXVI 492006 . T A 1714 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.728;QD=24.14;ReadPosRankSum=1.682;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1747,192,0 chrXVI 492354 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=14.9519;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.36;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2700,297,0 chrXVI 493265 . C T 1865 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.19;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1898,210,0 chrXVI 493905 . C T 1683 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.34;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1716,192,0 chrXVI 495156 . A G 1197 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.174;QD=19.95;ReadPosRankSum=2.368;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1230,141,0 chrXVI 495265 . A G 3446.01 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=8.1660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.09;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3446,399,0 chrXVI 495832 . G A 2499 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2532,270,0 chrXVI 496495 . T C 2248 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.8094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.62;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2281,258,0 chrXVI 496633 . T C 2217 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.19;SB=-1.477e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2250,264,0 chrXVI 496642 . G A 2046 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.05;SB=-1.531e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2079,225,0 chrXVI 496921 . A G 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=93;Dels=0.00;FS=2.606;HaplotypeScore=10.2665;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.272;QD=17.59;ReadPosRankSum=2.925;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:3,90:93:99:1669,195,0 chrXVI 497140 . T C 1953 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.70;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1986,222,0 chrXVI 497758 . T C 1817 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.19;SB=-1.182e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1850,204,0 chrXVI 498437 . A G 2202 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.66;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2235,255,0 chrXVI 498617 . T C 1857 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=3.836;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.633;QD=17.69;ReadPosRankSum=1.699;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:1,103:105:99:1890,213,0 chrXVI 498689 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.55;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2404,258,0 chrXVI 499315 . G A 2185 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.2648;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.21;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2218,243,0 chrXVI 499388 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=23.58;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:2014,219,0 chrXVI 499635 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=21.08;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1635,174,0 chrXVI 499656 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=17.41;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1234,135,0 chrXVI 499664 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;QD=17.92;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1305,147,0 chrXVI 499678 . A G 1053 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=15.95;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1086,126,0 chrXVI 499684 . G A 1051 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=16.95;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1084,117,0 chrXVI 499691 . T C 1003 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.67;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1036,120,0 chrXVI 500111 . T C 1294 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.57;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1327,150,0 chrXVI 500240 . G A 1699 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.51;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1732,189,0 chrXVI 500541 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.3625;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.84;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1950,216,0 chrXVI 501323 . T A 2169 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.19;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2202,240,0 chrXVI 501709 . G C 1666 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.60;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,81:85:99:1699,192,0 chrXVI 502052 . G A 485 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=13.86;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:57:518,57,0 chrXVI 502118 . T C 345 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.08;SB=-7.067e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:42:378,42,0 chrXVI 502256 . A T 735 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,41:41:84:768,84,0 chrXVI 502390 . C T 897 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=23.61;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:99:930,102,0 chrXVI 502697 . G A 51.97 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=7.5222;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=0.90;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:9:84,9,0 chrXVI 503157 . C G 623 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=13.26;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:656,75,0 chrXVI 503305 . A C 1069 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.82;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1102,120,0 chrXVI 503314 . A G 888 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.44;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:921,108,0 chrXVI 503888 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.39;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1623,186,0 chrXVI 504597 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.81;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1479,168,0 chrXVI 504837 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.07;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:972,111,0 chrXVI 505008 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.08;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1743,186,0 chrXVI 505698 . C G 1392 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.78;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1425,165,0 chrXVI 505721 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.93;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1603,183,0 chrXVI 505836 . A G 2142 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.60;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2175,258,0 chrXVI 505893 . G A 2406 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=19.56;SB=-1.605e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2439,264,0 chrXVI 506058 . T G 2203 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.396;QD=21.18;ReadPosRankSum=1.665;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2236,255,0 chrXVI 506129 . T C 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=96;Dels=0.00;FS=6.356;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.622;QD=21.12;ReadPosRankSum=2.397;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:2,92:96:99:2061,228,0 chrXVI 506424 . A G 1432 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.60;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1465,168,0 chrXVI 506854 . T G 2261 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.599;QD=21.74;ReadPosRankSum=1.699;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2294,258,0 chrXVI 507005 . A G 1975 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=18.63;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2008,231,0 chrXVI 507023 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=16.27;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1644,186,0 chrXVI 507026 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=15.66;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1646,183,0 chrXVI 507047 . A C 1311 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.510;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.377;QD=14.25;ReadPosRankSum=1.694;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1344,153,0 chrXVI 507169 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.30;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1596,177,0 chrXVI 507218 . C A 2004 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.24;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2037,222,0 chrXVI 507225 . A G 2062 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=1.101;QD=18.58;ReadPosRankSum=2.936;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:3,107:111:99:2095,237,0 chrXVI 507476 . T C 1185 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.08;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1218,138,0 chrXVI 507491 . T C 1151 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.880;QD=18.87;ReadPosRankSum=1.619;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1184,135,0 chrXVI 507608 . A G 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=53;Dels=0.00;FS=3.768;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-0.139;QD=16.21;ReadPosRankSum=1.663;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:1,49:53:99:892,105,0 chrXVI 507635 . T C 1131 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;DP=68;Dels=0.00;FS=2.980;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.615;QD=16.63;ReadPosRankSum=2.377;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1164,129,0 chrXVI 507854 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.65;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1267,141,0 chrXVI 508142 . A C 2559 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.14;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2592,288,0 chrXVI 508199 . C T 2150 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.2991;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.12;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2183,237,0 chrXVI 508243 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.25;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1835,204,0 chrXVI 508709 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.56;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1308,141,0 chrXVI 509810 . T C 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=3.413;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.899;QD=20.71;ReadPosRankSum=1.688;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1690,189,0 chrXVI 509832 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.41;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1489,159,0 chrXVI 509846 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.71;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1305,147,0 chrXVI 510020 . A G 1301 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.68;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1334,150,0 chrXVI 510985 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.7370;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.50;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1753,198,0 chrXVI 511469 . A T 504 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.26;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:60:537,60,0 chrXVI 512028 . C T 742 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=10.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.247;QD=14.84;ReadPosRankSum=-1.178;SB=-9.101e+01 GT:AD:DP:GQ:PL 1/1:1,49:50:71:775,71,0 chrXVI 512149 . G A 462 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:54:495,54,0 chrXVI 512216 . A C 579 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=14.85;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:69:612,69,0 chrXVI 512760 . T C 1338 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.841;QD=19.11;ReadPosRankSum=1.683;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1371,162,0 chrXVI 513619 . G A 2345 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.4068;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.99;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2378,258,0 chrXVI 514290 . T A 764 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.10;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:797,90,0 chrXVI 515006 . G A 930 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.60;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:963,102,0 chrXVI 515138 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1508,177,0 chrXVI 515837 . T G 1122 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.81;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:63:99:1155,132,0 chrXVI 516047 . T C 1524 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.000;QD=22.75;ReadPosRankSum=1.680;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:1557,174,0 chrXVI 516134 . T A 1457 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.525;QD=21.75;ReadPosRankSum=1.575;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1490,165,0 chrXVI 516227 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1483,159,0 chrXVI 516650 . C G 895 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:928,105,0 chrXVI 516710 . T C 749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=4.301;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.050;QD=21.40;ReadPosRankSum=1.535;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:90:782,90,0 chrXVI 516787 . A G 1233 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=4.548;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.307;QD=21.63;ReadPosRankSum=1.672;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1266,144,0 chrXVI 517099 . C G 1332 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1365,153,0 chrXVI 517281 . T C 1160 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.12;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1193,135,0 chrXVI 517615 . G T 2949 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.8234;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.68;SB=-1.106e+03 GT:AD:DP:GQ:PL 1/1:0,135:136:99:2982,330,0 chrXVI 517746 . A G 1878 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1911,222,0 chrXVI 517818 . G A 2962 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.44;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2995,321,0 chrXVI 517881 . G A 2683 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.36;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2716,294,0 chrXVI 518153 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2043,222,0 chrXVI 518479 . A G 2622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=10.708;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.492;QD=22.41;ReadPosRankSum=2.940;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:3,114:117:99:2655,297,0 chrXVI 518518 . A G 2681 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.6835;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.94;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2714,306,0 chrXVI 518836 . A G 1788 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=93;Dels=0.00;FS=2.608;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.967;QD=19.23;ReadPosRankSum=2.877;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:3,87:93:99:1821,207,0 chrXVI 519038 . C T 2686 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=14.5061;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.66;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2719,297,0 chrXVI 519072 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.1535;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.51;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1808,204,0 chrXVI 519322 . A G 2601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.945;DP=129;Dels=0.00;FS=6.008;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.654;QD=20.16;ReadPosRankSum=2.945;SB=-1.530e+03 GT:AD:DP:GQ:PL 1/1:3,125:129:99:2634,291,0 chrXVI 519355 . G A 2446 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.05;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2479,270,0 chrXVI 519435 . T C 2792 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.6910;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.426;QD=21.31;ReadPosRankSum=1.705;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,130:131:99:2825,330,0 chrXVI 519523 . C A 2034 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2067,231,0 chrXVI 519721 . T C 2428 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=18.97;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:0,125:128:99:2461,282,0 chrXVI 519727 . A G 2357 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.48;SB=-1.387e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2390,279,0 chrXVI 519754 . G T 2564 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.88;SB=-1.475e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2597,285,0 chrXVI 520090 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=18.04;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1386,153,0 chrXVI 520114 . G A 1071 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=15.75;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1104,120,0 chrXVI 520132 . C T 714 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=8.02;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:84:747,84,0 chrXVI 520162 . A C 711 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=8.57;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:84:744,84,0 chrXVI 520194 . A T 1253 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.0552;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=12.53;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1286,144,0 chrXVI 520400 . T C 1009 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.10;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1042,114,0 chrXVI 520404 . G A 949 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.08;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:982,108,0 chrXVI 520446 . C G 610 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=15.64;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:643,75,0 chrXVI 520832 . T C 77.51 PASS AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=12.92;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:12:110,12,0 chrXVI 521100 . T C 70.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=-1.042;QD=4.70;ReadPosRankSum=1.504;SB=-5.205e-01 GT:AD:DP:GQ:PL 1/1:1,14:15:12:103,12,0 chrXVI 521292 . T C 662 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.06;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:695,78,0 chrXVI 521328 . G A 1130 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=25.11;SB=-1.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1163,126,0 chrXVI 521475 . A G 1670 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=4.461;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.834;QD=20.12;ReadPosRankSum=1.689;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:1,80:83:99:1703,201,0 chrXVI 521553 . T C 1861 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.565;QD=20.23;ReadPosRankSum=1.657;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1894,210,0 chrXVI 521940 . T C 2402 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=16.68;SB=-1.385e+03 GT:AD:DP:GQ:PL 1/1:0,144:144:99:2435,273,0 chrXVI 521945 . C G 2295 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=15.72;SB=-1.510e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:2328,264,0 chrXVI 522033 . G A 2047 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.31;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2080,222,0 chrXVI 522072 . G A 838 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=5.145;DP=124;Dels=0.00;FS=21.793;HaplotypeScore=85.8324;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;MQRankSum=2.403;QD=6.76;ReadPosRankSum=0.804;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:40,84:124:36:871,36,0 chrXVI 522090 . G A 141.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.572;DP=132;Dels=0.01;FS=27.217;HaplotypeScore=203.9944;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=0;MQRankSum=0.025;QD=1.07;ReadPosRankSum=2.149;SB=-5.500e+02 GT:AD:DP:GQ:PL 0/1:68,63:131:99:171,0,148 chrXVI 522094 . A C 185.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;DP=131;Dels=0.02;FS=10.920;HaplotypeScore=144.7584;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=0;MQRankSum=0.405;QD=1.41;ReadPosRankSum=-1.626;SB=-7.010e+02 GT:AD:DP:GQ:PL 0/1:47,81:128:68:215,0,68 chrXVI 522096 . T A 195.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DP=133;Dels=0.02;FS=6.808;HaplotypeScore=195.7451;MLEAC=1;MLEAF=0.500;MQ=31.67;MQ0=0;MQRankSum=0.884;QD=1.47;ReadPosRankSum=-1.847;SB=-5.020e+02 GT:AD:DP:GQ:PL 0/1:46,61:130:70:225,0,70 chrXVI 522099 . A G 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.376;DP=138;Dels=0.00;FS=9.064;HaplotypeScore=260.0775;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=0;MQRankSum=1.719;QD=0.34;ReadPosRankSum=-2.859;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:109,29:138:77:77,0,289 chrXVI 522104 . C A 239.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.920;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=193.8499;MLEAC=1;MLEAF=0.500;MQ=34.33;MQ0=0;MQRankSum=-1.000;QD=1.98;ReadPosRankSum=-2.537;SB=-3.630e+02 GT:AD:DP:GQ:PL 0/1:64,57:121:51:269,0,51 chrXVI 522105 . A G 150.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=123;Dels=0.00;FS=7.589;HaplotypeScore=169.6914;MLEAC=1;MLEAF=0.500;MQ=34.90;MQ0=0;MQRankSum=0.810;QD=1.22;ReadPosRankSum=-2.069;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:90,31:123:99:180,0,135 chrXVI 522195 . G C 1869 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=15.84;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,118:118:99:1902,225,0 chrXVI 522294 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.37;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1642,189,0 chrXVI 522945 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.76;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1673,192,0 chrXVI 522978 . C A 1678 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.24;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1711,195,0 chrXVI 523433 . C G 1326 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.22;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1359,153,0 chrXVI 523446 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=18.32;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1334,144,0 chrXVI 523482 . A G 1271 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=15.69;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1304,150,0 chrXVI 523494 . A G 1077 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=14.55;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1110,126,0 chrXVI 523583 . C T 901 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:934,102,0 chrXVI 523692 . T C 936 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.00;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:969,114,0 chrXVI 523749 . T C 1128 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.69;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1161,129,0 chrXVI 523800 . A G 1397 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0176;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.88;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1430,168,0 chrXVI 524127 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.91;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1407,153,0 chrXVI 524220 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.32;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1714,183,0 chrXVI 524518 . T G 1294 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.70;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1327,150,0 chrXVI 524643 . A G 1882 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=96;Dels=0.00;FS=5.450;HaplotypeScore=6.6122;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.737;QD=19.60;ReadPosRankSum=2.814;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:3,89:96:99:1915,216,0 chrXVI 524743 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.30;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1588,180,0 chrXVI 524953 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.59;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:2010,216,0 chrXVI 525145 . C T 768 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.20;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:801,87,0 chrXVI 525272 . A G 972 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.00;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1005,117,0 chrXVI 525289 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.67;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1004,114,0 chrXVI 525308 . G T 1306 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.79;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1339,147,0 chrXVI 525445 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1291,144,0 chrXVI 525725 . T G 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.220;QD=18.85;ReadPosRankSum=1.606;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1070,126,0 chrXVI 525874 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.85;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:938,102,0 chrXVI 526094 . A C 1102 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.49;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1135,132,0 chrXVI 526176 . T C 1229 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.2178;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.82;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1262,141,0 chrXVI 526257 . T C 754 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=7.710;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.471;QD=17.53;ReadPosRankSum=2.336;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:93:787,93,0 chrXVI 526602 . A G 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=6.198;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=0.346;QD=24.28;ReadPosRankSum=1.686;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1854,213,0 chrXVI 526725 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.10;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1219,141,0 chrXVI 526767 . A G 848 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.04;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:881,102,0 chrXVI 526851 . C T 957 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=66.3389;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=11.81;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:990,108,0 chrXVI 527307 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.37;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1907,213,0 chrXVI 527344 . C G 1661 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.86;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1694,195,0 chrXVI 527456 . A G 1539 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=3.061;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-1.777;QD=19.99;ReadPosRankSum=2.322;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1572,180,0 chrXVI 527480 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.36;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1355,147,0 chrXVI 527482 . C T 1329 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.96;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1362,150,0 chrXVI 527574 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.61;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1426,165,0 chrXVI 527906 . A G 1472 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.32;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1505,171,0 chrXVI 528320 . T C 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.719;QD=19.04;ReadPosRankSum=1.667;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2051,240,0 chrXVI 528371 . A G 1800 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.95;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1833,207,0 chrXVI 528593 . T C 1831 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.397;QD=22.06;ReadPosRankSum=1.690;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1864,213,0 chrXVI 529090 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.23;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1379,156,0 chrXVI 529207 . G A 1343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.315;QD=20.35;ReadPosRankSum=0.682;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1376,126,0 chrXVI 529318 . A G 953 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.5893;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.083;QD=15.62;ReadPosRankSum=2.885;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:99:986,111,0 chrXVI 529371 . A G 921 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.6892;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=-1.006;QD=14.85;ReadPosRankSum=1.676;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:954,111,0 chrXVI 529663 . G A 1229 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.63;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1262,135,0 chrXVI 529749 . T C 732 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.33;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:765,87,0 chrXVI 529887 . C A 1599 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.74;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1632,174,0 chrXVI 529905 . T A 1497 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=17.21;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1530,174,0 chrXVI 530286 . A G 1884 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.70;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1917,225,0 chrXVI 530370 . A G 1640 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.7341;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.371;QD=19.07;ReadPosRankSum=1.650;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1673,189,0 chrXVI 530529 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.63;SB=-1.197e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2035,225,0 chrXVI 530697 . A G 2054 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.685;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.386;QD=20.54;ReadPosRankSum=1.697;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:2087,246,0 chrXVI 530807 . G C 1774 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.08;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1807,201,0 chrXVI 531090 . G A 1379 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.89;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1412,153,0 chrXVI 531193 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.19;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1678,192,0 chrXVI 531408 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.28;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1480,162,0 chrXVI 531420 . T C 1328 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.43;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1361,153,0 chrXVI 531957 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.30;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1384,153,0 chrXVI 532005 . T C 948 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.24;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:981,111,0 chrXVI 532008 . T C 939 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.39;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:972,111,0 chrXVI 532188 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.38;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1376,156,0 chrXVI 532272 . T A 1296 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1329,150,0 chrXVI 532319 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1630,180,0 chrXVI 532491 . A C 1504 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.89;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,70:72:99:1537,171,0 chrXVI 532572 . C G 1485 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.62;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1518,177,0 chrXVI 533002 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.00;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1613,177,0 chrXVI 533061 . C T 1752 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.63;SB=-9.670e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1785,195,0 chrXVI 533286 . A C 924 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.11;SB=-5.201e+01 GT:AD:DP:GQ:PL 1/1:0,54:54:99:957,108,0 chrXVI 533561 . G A 976 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=22.18;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1009,108,0 chrXVI 533565 . G A 959 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.31;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:992,108,0 chrXVI 533778 . T C 965 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.460;QD=19.69;ReadPosRankSum=1.662;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:998,111,0 chrXVI 533888 . T G 1755 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=5.467;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.458;QD=20.89;ReadPosRankSum=2.917;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:3,81:84:99:1788,201,0 chrXVI 534359 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2003,216,0 chrXVI 534572 . C T 2908 SnpCluster AC=2;AF=1.00;AN=2;DP=145;Dels=0.02;FS=0.000;HaplotypeScore=5.4116;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.06;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:2941,327,0 chrXVI 534574 . A G 2932 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=6.110;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.035;QD=20.36;ReadPosRankSum=2.867;SB=-1.804e+03 GT:AD:DP:GQ:PL 1/1:3,141:144:99:2965,333,0 chrXVI 534581 . T C 2736 SnpCluster AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.83;SB=-1.722e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2769,321,0 chrXVI 534749 . G A 2641 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.38;SB=-1.465e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2674,291,0 chrXVI 535407 . T C 732 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=15.57;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:87:765,87,0 chrXVI 535413 . T C 749 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=4.260;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=-0.361;QD=15.29;ReadPosRankSum=1.660;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:1,47:49:93:782,93,0 chrXVI 535437 . C T 846 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.27;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:879,93,0 chrXVI 535979 . G T 943 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.06;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:976,102,0 chrXVI 536003 . T C 909 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.34;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:942,108,0 chrXVI 536180 . T C 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=64;Dels=0.00;FS=4.082;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.217;QD=18.06;ReadPosRankSum=1.624;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1189,135,0 chrXVI 536238 . C T 1169 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.81;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1202,129,0 chrXVI 536707 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=17.0060;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=14.99;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1367,156,0 chrXVI 536720 . T C 875 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.865;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=13.4513;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-1.644;QD=11.08;ReadPosRankSum=5.233;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:20,57:78:99:908,105,0 chrXVI 536723 . T C 764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.493;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=12.6626;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=-1.857;QD=10.19;ReadPosRankSum=4.004;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:24,51:75:70:797,70,0 chrXVI 536750 . T G 89.26 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-3.407;DP=66;Dels=0.00;FS=11.207;HaplotypeScore=61.1565;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-3.639;QD=1.35;ReadPosRankSum=-4.462;SB=2.74 GT:AD:DP:GQ:PL 1/1:56,10:66:15:122,15,0 chrXVI 537057 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=15.98;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2079,234,0 chrXVI 537122 . A G 1724 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=17.0343;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.96;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,90:96:99:1757,204,0 chrXVI 537164 . A G 1576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=74;Dels=0.00;FS=6.451;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.084;QD=21.30;ReadPosRankSum=2.382;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:2,71:74:99:1609,183,0 chrXVI 537410 . G A 1662 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.02;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1695,183,0 chrXVI 537914 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.96;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1500,162,0 chrXVI 537975 . G C 1377 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.67;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1410,162,0 chrXVI 538056 . A T 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.4342;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.466;QD=20.42;ReadPosRankSum=1.679;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1401,150,0 chrXVI 538685 . A G 1336 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.994;QD=21.90;ReadPosRankSum=1.675;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1369,156,0 chrXVI 538748 . A G 962 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.15;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:995,114,0 chrXVI 538784 . A G 920 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8128;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.597;QD=15.86;ReadPosRankSum=1.673;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:953,111,0 chrXVI 539109 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.85;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1502,162,0 chrXVI 539185 . A G 1650 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7083;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.19;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1683,189,0 chrXVI 539194 . G A 1536 SnpCluster AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=16.34;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1569,171,0 chrXVI 539197 . A G 1410 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=14.54;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:97:99:1443,165,0 chrXVI 539199 . C T 1337 SnpCluster AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=14.07;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1370,150,0 chrXVI 539281 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.43;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2141,243,0 chrXVI 539378 . C T 1990 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.98;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2023,219,0 chrXVI 539795 . T A 2028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=90;Dels=0.00;FS=3.424;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.591;QD=22.53;ReadPosRankSum=1.693;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2061,222,0 chrXVI 539864 . T C 1956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=3.709;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.115;QD=19.37;ReadPosRankSum=1.629;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:1,100:101:99:1989,228,0 chrXVI 539891 . G C 2054 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.56;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2087,234,0 chrXVI 539931 . A G 1898 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.19;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1931,225,0 chrXVI 540040 . A G 2319 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.742;QD=22.09;ReadPosRankSum=1.666;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2352,267,0 chrXVI 540158 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.80;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2223,243,0 chrXVI 540311 . C G 1643 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1978;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.91;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1676,195,0 chrXVI 540419 . A G 1475 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.93;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1508,171,0 chrXVI 540443 . C T 1295 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.23;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1328,144,0 chrXVI 540521 . A G 1215 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.498;QD=16.42;ReadPosRankSum=1.685;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1248,141,0 chrXVI 540893 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.92;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1468,159,0 chrXVI 541043 . G A 1267 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.23;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1300,141,0 chrXVI 541191 . G A 1452 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1485,165,0 chrXVI 541340 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1407,162,0 chrXVI 542024 . A G 2400 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=117;Dels=0.00;FS=6.137;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.425;QD=20.51;ReadPosRankSum=2.406;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:2,111:117:99:2433,273,0 chrXVI 542071 . C T 3049 SnpCluster AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.06;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:3082,339,0 chrXVI 542076 . G T 2901 SnpCluster AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.96;SB=-1.574e+03 GT:AD:DP:GQ:PL 1/1:0,152:153:99:2934,321,0 chrXVI 542081 . C T 2823 SnpCluster AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.95;SB=-1.506e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2856,312,0 chrXVI 542211 . G A 1861 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.15;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1894,204,0 chrXVI 542291 . T C 1450 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.33;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1483,165,0 chrXVI 542298 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=17.45;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1342,153,0 chrXVI 542310 . C T 1286 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=16.92;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1319,144,0 chrXVI 542513 . T C 3169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=3.779;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.726;QD=21.41;ReadPosRankSum=1.685;SB=-1.538e+03 GT:AD:DP:GQ:PL 1/1:1,147:148:99:3202,366,0 chrXVI 542586 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.75;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1889,207,0 chrXVI 543224 . C G 1297 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.27;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1330,147,0 chrXVI 543428 . C T 2052 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.59;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2085,228,0 chrXVI 543686 . A G 1824 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=20.8073;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.443;QD=18.42;ReadPosRankSum=1.696;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:1,95:98:99:1857,210,0 chrXVI 543839 . G A 2551 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.08;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2584,279,0 chrXVI 543937 . A G 1780 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;DP=80;Dels=0.00;FS=16.664;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.861;QD=22.25;ReadPosRankSum=2.912;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:3,77:80:99:1813,204,0 chrXVI 544093 . C T 2010 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.37;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2043,222,0 chrXVI 544271 . T G 1973 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.93;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2006,234,0 chrXVI 544371 . A G 2190 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.47;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2223,261,0 chrXVI 544432 . C G 1528 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.41;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1561,180,0 chrXVI 544433 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.78;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1592,177,0 chrXVI 544471 . A G 1287 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=3.445;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-1.567;QD=14.97;ReadPosRankSum=1.608;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:1,83:86:99:1320,147,0 chrXVI 544477 . A G 1367 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.132;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=0.350;QD=15.36;ReadPosRankSum=2.394;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:2,86:89:99:1400,156,0 chrXVI 544608 . G A 2988 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;DP=131;Dels=0.00;FS=3.078;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.652;QD=22.81;ReadPosRankSum=1.679;SB=-1.565e+03 GT:AD:DP:GQ:PL 1/1:1,129:131:99:3021,307,0 chrXVI 544798 . A T 1468 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.28;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1501,171,0 chrXVI 545158 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.36;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1373,153,0 chrXVI 545431 . A G 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.350;QD=16.60;ReadPosRankSum=2.368;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1029,117,0 chrXVI 545469 . G T 763 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=13.62;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:87:796,87,0 chrXVI 545480 . A G 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.176;QD=17.10;ReadPosRankSum=2.372;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1110,126,0 chrXVI 545566 . C T 1233 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.89;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1266,141,0 chrXVI 545612 . A T 1173 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.05;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1206,129,0 chrXVI 545616 . A G 1104 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=16.73;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1137,129,0 chrXVI 545698 . A T 2000 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.99;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2033,222,0 chrXVI 546628 . C T 954 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:987,108,0 chrXVI 546814 . C T 1649 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.99;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1682,183,0 chrXVI 547624 . A G 1719 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.764;QD=18.48;ReadPosRankSum=1.658;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1752,195,0 chrXVI 548014 . A G 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.649;QD=18.96;ReadPosRankSum=1.690;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,82:83:99:1607,186,0 chrXVI 548476 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1523,174,0 chrXVI 548919 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.71;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1441,165,0 chrXVI 549088 . T C 1630 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.626;QD=22.64;ReadPosRankSum=1.684;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1663,189,0 chrXVI 549254 . A G 1301 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.801;QD=19.42;ReadPosRankSum=1.681;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1334,153,0 chrXVI 549520 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.84;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1303,141,0 chrXVI 549578 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.73;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1217,132,0 chrXVI 549673 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1409,156,0 chrXVI 549906 . G C 823 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.07;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:856,99,0 chrXVI 550193 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1746,189,0 chrXVI 550401 . A G 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.206;QD=20.33;ReadPosRankSum=1.674;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1253,144,0 chrXVI 550572 . A G 816 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.40;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:849,96,0 chrXVI 550760 . T C 1218 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1251,144,0 chrXVI 550866 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.28;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1534,171,0 chrXVI 551352 . G A 1567 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.35;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1600,180,0 chrXVI 551484 . T C 596 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.86;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:72:629,72,0 chrXVI 551920 . C G 858 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.43;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:891,99,0 chrXVI 552478 . T C 2170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=14.0405;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.016;QD=19.73;ReadPosRankSum=1.699;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:1,104:110:99:2203,249,0 chrXVI 552585 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.73;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2010,225,0 chrXVI 552914 . A C 1916 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3726;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.60;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1949,216,0 chrXVI 552953 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2035,234,0 chrXVI 553033 . G A 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.074;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.504;QD=17.51;ReadPosRankSum=-0.724;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1451,137,0 chrXVI 553071 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.73;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1132,132,0 chrXVI 553081 . G A 952 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.31;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:985,105,0 chrXVI 553236 . A G 839 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:872,99,0 chrXVI 553411 . T A 1642 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.61;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1675,183,0 chrXVI 553465 . G A 1552 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.16;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1585,171,0 chrXVI 553603 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.56;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1390,153,0 chrXVI 554044 . T C 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.500;QD=20.73;ReadPosRankSum=1.694;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1899,222,0 chrXVI 554287 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.2602;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.77;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1653,192,0 chrXVI 554408 . A G 1951 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.06;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1984,222,0 chrXVI 554518 . T C 3481.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.120;QD=21.23;ReadPosRankSum=1.669;SB=-1.937e+03 GT:AD:DP:GQ:PL 1/1:1,163:164:99:3481,399,0 chrXVI 554526 . T C 3461.01 PASS AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.04;SB=-1.870e+03 GT:AD:DP:GQ:PL 1/1:0,157:157:99:3461,393,0 chrXVI 554599 . A G 2454 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.62;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2487,294,0 chrXVI 554689 . G A 1484 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.46;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1517,177,0 chrXVI 554989 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.79;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2103,237,0 chrXVI 555444 . T C 943 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.49;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:976,111,0 chrXVI 555465 . C G 771 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.40;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:90:804,90,0 chrXVI 555561 . T C 713 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:746,87,0 chrXVI 555794 . A T 67.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.88;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:100,12,0 chrXVI 555795 . T A 72.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.13;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:105,12,0 chrXVI 555825 . G A 158.06 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,8:8:21:191,21,0 chrXVI 555945 . G A 164.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.23;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:197,21,0 chrXVI 556040 . G A 349 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=13.96;SB=-6.793e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:382,45,0 chrXVI 556041 . T G 350 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=14.00;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:383,45,0 chrXVI 556042 . T C 356 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=14.24;SB=-6.794e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:45:389,45,0 chrXVI 556092 . C T 698 filter AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=18.37;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,38:38:78:731,78,0 chrXVI 556165 . G T 1033 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=24.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1066,114,0 chrXVI 556406 . T C 1144 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9162;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=1.267;QD=17.07;ReadPosRankSum=1.422;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1177,135,0 chrXVI 556411 . G A 1134 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=3.8321;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.20;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1167,132,0 chrXVI 556511 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.42;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2004,216,0 chrXVI 556778 . C A 2089 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.71;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2122,234,0 chrXVI 557883 . G A 694 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=62.10;MQ0=0;QD=18.76;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:727,84,0 chrXVI 558028 . T C 779 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.0053;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-0.787;QD=14.16;ReadPosRankSum=1.821;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:96:812,96,0 chrXVI 559956 . G A 763 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.19;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:796,87,0 chrXVI 560045 . G T 985 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.31;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1018,114,0 chrXVI 560053 . G A 885 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.58;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:918,102,0 chrXVI 560087 . A G 839 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-1.364;QD=17.85;ReadPosRankSum=1.659;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:872,102,0 chrXVI 560123 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=20.65;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:983,114,0 chrXVI 560312 . C T 625 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=17.36;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:658,72,0 chrXVI 560313 . T C 569 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.50;MQ0=0;QD=15.81;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:69:602,69,0 chrXVI 560326 . C T 522 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=17.40;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:60:555,60,0 chrXVI 560337 . T C 235 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.27;MQ0=0;QD=13.82;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:30:268,30,0 chrXVI 560342 . G T 208.01 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;QD=13.00;SB=-8.102e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:27:241,27,0 chrXVI 560353 . G A 165.06 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=10.32;SB=-4.607e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:21:198,21,0 chrXVI 560358 . C T 149.06 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.28;SB=-8.207e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:21:182,21,0 chrXVI 560376 . T C 463 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=11.392;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;MQRankSum=0.195;QD=14.47;ReadPosRankSum=2.297;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:57:496,57,0 chrXVI 560712 . T G 69.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.06;MQ0=6;MQRankSum=1.221;QD=4.63;ReadPosRankSum=1.920;SB=-4.575e+01 GT:AD:DP:GQ:PL 1/1:7,7:15:12:102,12,0 chrXVI 560716 . C T 73.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=6;MQRankSum=0.736;QD=6.13;ReadPosRankSum=0.736;SB=-4.775e+01 GT:AD:DP:GQ:PL 1/1:5,7:12:12:106,12,0 chrXVI 560758 . A G 66.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=3;QD=8.31;SB=-4.775e+01 GT:AD:DP:GQ:PL 1/1:1,7:8:12:99,12,0 chrXVI 560767 . C T 44.97 filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=2;QD=6.42;SB=-2.821e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:77,9,0 chrXVI 560857 . T C 925 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=14.68;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:958,111,0 chrXVI 561045 . A T 1311 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=19.28;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1344,147,0 chrXVI 561052 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.41;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1321,153,0 chrXVI 561225 . C T 882 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.50;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:915,99,0 chrXVI 561239 . A T 941 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.91;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:974,111,0 chrXVI 561274 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.41;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1063,114,0 chrXVI 561360 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=21.29;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1523,168,0 chrXVI 561362 . T C 1478 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.53;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1511,168,0 chrXVI 561434 . T A 921 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.75;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:954,105,0 chrXVI 561472 . T G 908 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.12;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:941,105,0 chrXVI 561671 . T A 1829 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.75;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1862,201,0 chrXVI 561816 . C A 1468 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.58;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1501,165,0 chrXVI 561972 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.17;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1768,198,0 chrXVI 562779 . A G 2447 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=104;Dels=0.00;FS=6.584;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.959;QD=23.53;ReadPosRankSum=2.355;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:2,102:104:99:2480,282,0 chrXVI 562911 . G A 1860 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.44;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1893,204,0 chrXVI 563274 . A G 2066 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.36;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,117:119:99:2099,237,0 chrXVI 563280 . A G 1864 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.75;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1897,219,0 chrXVI 563468 . A C 2054 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.4972;MLEAC=2;MLEAF=1.00;MQ=61.11;MQ0=0;QD=16.84;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2087,240,0 chrXVI 564521 . A C 1752 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.84;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1785,204,0 chrXVI 564703 . T C 1207 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.79;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1240,144,0 chrXVI 564724 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.82;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1341,153,0 chrXVI 565045 . A G 1469 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.85;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1502,171,0 chrXVI 565119 . T A 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.918;DP=66;Dels=0.00;FS=2.903;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.247;QD=16.88;ReadPosRankSum=2.222;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:2,64:66:99:1147,129,0 chrXVI 565170 . C T 1421 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.92;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1454,159,0 chrXVI 565246 . A T 841 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.56;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:874,93,0 chrXVI 565328 . C T 959 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.83;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:992,108,0 chrXVI 565500 . T C 1042 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.71;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1075,123,0 chrXVI 565561 . A G 1219 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.02;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1252,144,0 chrXVI 565601 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.28;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,47:50:99:997,108,0 chrXVI 565603 . T A 929 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.35;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:962,105,0 chrXVI 565677 . C A 558 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9198;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=14.31;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:66:591,66,0 chrXVI 565783 . T A 1070 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.77;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1103,120,0 chrXVI 566078 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.09;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1255,144,0 chrXVI 566096 . T C 1113 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.25;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1146,129,0 chrXVI 566123 . G A 1116 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.00;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1149,123,0 chrXVI 566170 . A T 1239 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.98;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1272,138,0 chrXVI 566571 . A G 1312 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=8.6131;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.531;QD=19.01;ReadPosRankSum=1.682;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1345,150,0 chrXVI 566724 . A G 2088 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.577;QD=21.75;ReadPosRankSum=1.696;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2121,240,0 chrXVI 567069 . G A 1902 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.23;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1935,210,0 chrXVI 567139 . T G 2112 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.56;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,106:108:99:2145,246,0 chrXVI 568012 . T G 1588 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=80;Dels=0.00;FS=5.119;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.466;QD=19.85;ReadPosRankSum=1.688;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:1,77:80:99:1621,164,0 chrXVI 568030 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.86;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1483,159,0 chrXVI 568268 . C T 1826 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.29;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1859,204,0 chrXVI 568274 . T A 1636 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2988;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.78;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1669,189,0 chrXVI 568709 . G A 1471 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.63;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1504,165,0 chrXVI 568823 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.78;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,74:76:99:1612,183,0 chrXVI 568866 . A G 1361 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.72;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1394,159,0 chrXVI 568979 . G T 1069 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=17.24;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:62:99:1102,117,0 chrXVI 569106 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=14.97;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1021,108,0 chrXVI 569117 . T C 1206 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.23;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1239,141,0 chrXVI 569684 . G C 1269 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.83;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:64:99:1302,147,0 chrXVI 569981 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.15;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1471,165,0 chrXVI 570048 . C T 929 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.64;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:962,105,0 chrXVI 570118 . G A 896 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.06;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:929,99,0 chrXVI 570121 . A T 891 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=18.96;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:924,99,0 chrXVI 570168 . C T 1284 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.5442;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.06;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1317,144,0 chrXVI 570251 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.98;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1242,138,0 chrXVI 570266 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=17.46;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:93:871,93,0 chrXVI 570287 . A G 830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.499;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.553;QD=17.29;ReadPosRankSum=1.659;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:96:863,96,0 chrXVI 570404 . G A 1055 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.23;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1088,123,0 chrXVI 570409 . G C 1077 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.37;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1110,126,0 chrXVI 570452 . T C 1082 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.98;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1115,126,0 chrXVI 570943 . T C 909 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.55;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:942,108,0 chrXVI 570989 . T C 1363 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.34;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1396,156,0 chrXVI 571076 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.37;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1398,156,0 chrXVI 571100 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.98;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1153,132,0 chrXVI 571220 . A G 917 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.93;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:950,108,0 chrXVI 571446 . T A 1511 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1400;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.70;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1544,168,0 chrXVI 571597 . G A 1077 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=21.98;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1110,120,0 chrXVI 571664 . A T 1692 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=18.80;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1725,189,0 chrXVI 571702 . T G 2428 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=-0.969;QD=20.40;ReadPosRankSum=1.644;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,117:119:99:2461,273,0 chrXVI 571735 . A G 2259 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.31;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2292,267,0 chrXVI 571853 . T C 1874 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1907,222,0 chrXVI 571946 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=15.87;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:1763,195,0 chrXVI 571959 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=1;QD=14.26;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1602,177,0 chrXVI 571977 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=1;QD=11.79;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1365,156,0 chrXVI 571989 . A T 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.160;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=1;MQRankSum=-1.233;QD=12.32;ReadPosRankSum=1.644;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:1499,165,0 chrXVI 572056 . T C 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.5487;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.335;QD=19.09;ReadPosRankSum=1.674;SB=-1.386e+03 GT:AD:DP:GQ:PL 1/1:1,118:119:99:2305,261,0 chrXVI 572146 . A G 2169 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.26;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2202,249,0 chrXVI 572246 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3861;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=20.30;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1515,180,0 chrXVI 572263 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=19.91;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1367,162,0 chrXVI 572268 . C A 1198 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=20.31;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1231,138,0 chrXVI 572357 . T C 888 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=12.16;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:921,108,0 chrXVI 573140 . T C 1019 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.68;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1052,120,0 chrXVI 573299 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.71;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1811,195,0 chrXVI 573515 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1645,189,0 chrXVI 573602 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.54;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1214,141,0 chrXVI 573609 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=15.17;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1095,126,0 chrXVI 573711 . G A 2796 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.67;SB=-1.429e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2829,300,0 chrXVI 573974 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.96;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1856,207,0 chrXVI 574042 . A G 2497 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.81;SB=-1.207e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2530,291,0 chrXVI 574108 . A T 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.004;DP=121;Dels=0.00;FS=12.565;HaplotypeScore=15.0511;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=0.168;QD=16.66;ReadPosRankSum=2.785;SB=-1.379e+03 GT:AD:DP:GQ:PL 1/1:4,117:121:99:2049,225,0 chrXVI 574109 . T C 1901 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.6726;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;MQRankSum=-1.603;QD=15.58;ReadPosRankSum=3.594;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:5,113:122:99:1934,222,0 chrXVI 574122 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=16.69;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:1869,207,0 chrXVI 574147 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=14.79;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1556,168,0 chrXVI 574276 . A C 1666 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1699,189,0 chrXVI 574820 . A G 1542 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.548;QD=19.52;ReadPosRankSum=1.644;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1575,177,0 chrXVI 575003 . T C 1229 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.07;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1262,150,0 chrXVI 575320 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.45;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1260,135,0 chrXVI 575390 . G T 1052 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.38;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1085,123,0 chrXVI 575601 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.55;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1389,156,0 chrXVI 575759 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.07;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1255,135,0 chrXVI 575828 . G C 408 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=19.7570;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;QD=10.46;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:51:441,51,0 chrXVI 575846 . C A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3218;MLEAC=1;MLEAF=0.500;MQ=34.67;MQ0=0;MQRankSum=0.968;QD=0.20;ReadPosRankSum=-4.160;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:43,9:52:40:40,0,58 chrXVI 575871 . T C 386 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=7.57;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:48:419,48,0 chrXVI 575912 . C T 891 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.25;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:924,99,0 chrXVI 576040 . C A 1019 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8874;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.27;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1052,114,0 chrXVI 576041 . G T 1002 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8874;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.98;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1035,114,0 chrXVI 576287 . C G 1154 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.23;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:60:99:1187,135,0 chrXVI 576345 . A T 606 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=12.62;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:75:639,75,0 chrXVI 576347 . G C 562 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=11.47;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,45:49:69:595,69,0 chrXVI 576653 . A G 1256 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.62;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1289,150,0 chrXVI 576758 . T G 1521 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.69;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1554,180,0 chrXVI 576985 . T C 1303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.144;QD=18.10;ReadPosRankSum=1.636;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1336,153,0 chrXVI 577046 . A G 1843 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4912;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.48;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1876,222,0 chrXVI 577130 . C T 1653 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.00;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1686,186,0 chrXVI 577229 . T C 1562 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.40;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1595,177,0 chrXVI 577235 . T C 1398 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.26;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:69:99:1431,165,0 chrXVI 577272 . C T 1220 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.18;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1253,135,0 chrXVI 577381 . C A 2294 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.05;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2327,255,0 chrXVI 577411 . G A 2300 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.71;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2333,249,0 chrXVI 577582 . T C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.439;QD=15.04;ReadPosRankSum=1.686;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1161,132,0 chrXVI 577654 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.83;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1679,189,0 chrXVI 577750 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.41;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1159,126,0 chrXVI 577813 . G A 1893 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=24.27;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1926,207,0 chrXVI 577966 . A G 2254 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1925;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.94;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,118:119:99:2287,270,0 chrXVI 578041 . C G 2565 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.6357;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.43;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2598,297,0 chrXVI 578104 . G A 2555 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.61;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2588,279,0 chrXVI 578155 . G A 2305 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.53;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2338,252,0 chrXVI 578173 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=16.47;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1943,228,0 chrXVI 578188 . C T 1854 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=16.41;SB=-1.225e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1887,207,0 chrXVI 578197 . T C 1880 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=16.21;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1913,210,0 chrXVI 578287 . T C 1913 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.08;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1946,219,0 chrXVI 578350 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.6067;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.965;QD=17.17;ReadPosRankSum=1.626;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:1,130:133:99:2317,267,0 chrXVI 578605 . A G 2046 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=102;Dels=0.00;FS=14.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.109;QD=20.06;ReadPosRankSum=2.931;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:3,99:102:99:2079,243,0 chrXVI 578623 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.40;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2173,237,0 chrXVI 578686 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=13.98;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1193,141,0 chrXVI 578941 . T C 2135 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.50;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2168,246,0 chrXVI 578962 . T C 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.577;QD=16.18;ReadPosRankSum=1.702;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1878,213,0 chrXVI 579256 . A G 2564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=120;Dels=0.00;FS=3.027;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.568;QD=21.37;ReadPosRankSum=2.388;SB=-1.377e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2597,294,0 chrXVI 579598 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.44;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1577,180,0 chrXVI 579706 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.70;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1573,171,0 chrXVI 579787 . C T 1469 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.69;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1502,162,0 chrXVI 580156 . T C 1513 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.01;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1546,174,0 chrXVI 580240 . A T 1746 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.153;QD=21.56;ReadPosRankSum=1.688;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1779,192,0 chrXVI 580258 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.9733;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.30;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1469,168,0 chrXVI 580273 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.99;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1772,201,0 chrXVI 580513 . G A 2328 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.17;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2361,255,0 chrXVI 580618 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0832;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.73;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,91:92:99:2032,231,0 chrXVI 580810 . C T 2499 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=15.3964;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.37;SB=-1.654e+03 GT:AD:DP:GQ:PL 1/1:0,127:129:99:2532,270,0 chrXVI 580849 . T C 2713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=130;Dels=0.00;FS=3.018;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.428;QD=20.87;ReadPosRankSum=2.317;SB=-1.462e+03 GT:AD:DP:GQ:PL 1/1:2,128:130:99:2746,315,0 chrXVI 580882 . C T 2667 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.2020;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.34;SB=-1.474e+03 GT:AD:DP:GQ:PL 1/1:0,124:125:99:2700,294,0 chrXVI 580936 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=17.66;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1905,216,0 chrXVI 581014 . T C 2615 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.661;QD=23.56;ReadPosRankSum=1.701;SB=-1.298e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2648,297,0 chrXVI 581104 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.2188;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=22.55;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1724,201,0 chrXVI 581158 . A C 1407 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.27;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1440,168,0 chrXVI 581172 . C T 1376 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=17.87;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1409,162,0 chrXVI 581418 . G A 647 SnpCluster AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=12.44;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:75:680,75,0 chrXVI 581427 . C T 692 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.57;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:725,78,0 chrXVI 581428 . C T 666 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.06;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:78:699,78,0 chrXVI 581444 . C T 702 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=13.50;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:735,81,0 chrXVI 581445 . G A 714 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=13.73;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:84:747,84,0 chrXVI 581461 . G A 832 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=15.41;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:865,96,0 chrXVI 581474 . C T 843 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=17.20;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:876,96,0 chrXVI 581499 . A G 610 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=15.25;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:75:643,75,0 chrXVI 581536 . T C 484 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=13.08;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:517,60,0 chrXVI 581539 . G C 488 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=13.56;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:60:521,60,0 chrXVI 581566 . A G 264 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;QD=8.52;SB=-1.530e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:36:297,36,0 chrXVI 581572 . A C 296 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=9.25;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:36:329,36,0 chrXVI 581602 . C T 362 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=8.83;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:42:395,42,0 chrXVI 581607 . T C 404 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.85;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:437,48,0 chrXVI 581608 . C T 404 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.85;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:48:437,48,0 chrXVI 581643 . T G 458 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=10.18;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:54:491,54,0 chrXVI 581662 . T G 378 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=8.04;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:45:411,45,0 chrXVI 581701 . A G 253 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=7.44;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:33:286,33,0 chrXVI 581711 . A T 214.01 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;QD=7.93;SB=-2.800e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:27:247,27,0 chrXVI 581715 . G A 209.01 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.33;MQ0=0;QD=7.46;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:27:242,27,0 chrXVI 581744 . C T 268 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.23;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:36:301,36,0 chrXVI 581747 . C A 275 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=7.05;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:36:308,36,0 chrXVI 581748 . A G 277 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=6.92;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:36:310,36,0 chrXVI 581829 . A G 1993 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=22.65;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2026,231,0 chrXVI 581896 . G A 2321 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=25.23;SB=-1.048e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2354,258,0 chrXVI 582013 . C A 1158 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=17.28;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1191,132,0 chrXVI 582026 . G A 1176 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=18.37;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1209,135,0 chrXVI 582039 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=15.47;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1193,135,0 chrXVI 582043 . T G 1146 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=15.28;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1179,141,0 chrXVI 582145 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.44;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1316,150,0 chrXVI 582149 . A G 1178 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.85;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1211,135,0 chrXVI 582272 . T C 2936 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.94;SB=-1.624e+03 GT:AD:DP:GQ:PL 1/1:0,126:128:99:2969,330,0 chrXVI 582448 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.72;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1235,144,0 chrXVI 582475 . T C 1087 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.42;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1120,129,0 chrXVI 582586 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.48;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1382,159,0 chrXVI 582615 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.16;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1662,189,0 chrXVI 582618 . A G 1592 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.30;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1625,186,0 chrXVI 582788 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.47;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1201,132,0 chrXVI 582837 . A G 1482 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=13.590;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.349;QD=22.80;ReadPosRankSum=2.374;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1515,174,0 chrXVI 582921 . T C 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.162;QD=21.27;ReadPosRankSum=1.678;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1394,156,0 chrXVI 582996 . T C 1482 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.80;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1515,171,0 chrXVI 583060 . G C 1232 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.87;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1265,144,0 chrXVI 583181 . C T 1416 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.52;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1449,156,0 chrXVI 583248 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.03;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1634,189,0 chrXVI 583395 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.1435;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.90;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2248,249,0 chrXVI 583481 . G T 1502 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.01;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1535,171,0 chrXVI 583554 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.61;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1414,159,0 chrXVI 583659 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=13.66;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1112,129,0 chrXVI 583665 . T C 1170 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=4.407;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;MQRankSum=-0.779;QD=14.44;ReadPosRankSum=1.689;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1203,138,0 chrXVI 583703 . T A 1266 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=13.61;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1299,141,0 chrXVI 583743 . T A 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.82;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1896,204,0 chrXVI 583962 . T C 1011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=1.910;QD=15.80;ReadPosRankSum=2.296;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:1044,117,0 chrXVI 584088 . A G 971 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=19.04;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1004,114,0 chrXVI 584108 . G A 1164 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=20.79;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1197,129,0 chrXVI 584219 . A G 1160 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.89;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1193,138,0 chrXVI 584333 . T C 1020 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=15.94;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1053,123,0 chrXVI 584345 . C T 1080 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=15.43;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1113,117,0 chrXVI 584359 . C T 968 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=10.41;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1001,111,0 chrXVI 584447 . G A 333 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=7.24;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:39:366,39,0 chrXVI 584453 . C T 361 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=7.52;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:42:394,42,0 chrXVI 584469 . G C 604 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=12.58;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:72:637,72,0 chrXVI 585037 . G A 2284 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.98;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2317,255,0 chrXVI 585060 . T C 2094 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=5.252;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-1.173;QD=16.62;ReadPosRankSum=1.704;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:1,123:126:99:2127,240,0 chrXVI 585153 . A G 1657 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=4.868;DP=116;Dels=0.00;FS=4.536;HaplotypeScore=13.5396;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.724;QD=14.28;ReadPosRankSum=4.806;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:9,106:116:99:1690,192,0 chrXVI 585208 . A T 1292 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.4474;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.23;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1325,144,0 chrXVI 585481 . G A 805 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=17.50;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:93:838,93,0 chrXVI 585566 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.70;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1461,165,0 chrXVI 585624 . G A 1805 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.75;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1838,198,0 chrXVI 585743 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.44;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2070,228,0 chrXVI 585774 . G A 2213 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.58;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2246,246,0 chrXVI 585894 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.70;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1213,141,0 chrXVI 586133 . T C 1636 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=4.007;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.355;QD=20.97;ReadPosRankSum=1.688;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1669,189,0 chrXVI 586291 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.24;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1274,138,0 chrXVI 586309 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.44;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1003,117,0 chrXVI 586546 . T C 1275 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1796;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.61;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:59:99:1308,147,0 chrXVI 586725 . T A 1368 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.73;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1401,150,0 chrXVI 586768 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.42;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1509,174,0 chrXVI 586856 . G C 1634 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.95;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1667,189,0 chrXVI 587177 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.45;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1297,150,0 chrXVI 587188 . G T 1388 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.41;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1421,153,0 chrXVI 587507 . A G 870 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.33;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:903,102,0 chrXVI 587665 . A C 1647 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.12;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1680,189,0 chrXVI 587753 . A G 1924 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.47;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1957,222,0 chrXVI 587761 . A G 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.860;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-1.232;QD=18.93;ReadPosRankSum=1.655;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1756,201,0 chrXVI 587806 . G A 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.73;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,156,0 chrXVI 587838 . C T 1338 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.58;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1371,150,0 chrXVI 587915 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.93;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:910,102,0 chrXVI 588012 . C A 1312 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.50;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1345,147,0 chrXVI 588257 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.69;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1254,135,0 chrXVI 588493 . T C 1204 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=22.72;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1237,141,0 chrXVI 588612 . T C 798 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=15.06;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:93:831,93,0 chrXVI 588777 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.63;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1482,165,0 chrXVI 588825 . G A 1454 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2098;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.39;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1487,162,0 chrXVI 588860 . T C 1037 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=-0.657;QD=17.88;ReadPosRankSum=1.673;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1070,120,0 chrXVI 588861 . C A 1069 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=18.43;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1102,120,0 chrXVI 588877 . A G 975 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=17.73;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1008,114,0 chrXVI 588949 . A T 1288 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=4.994;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.635;QD=21.11;ReadPosRankSum=1.675;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1321,141,0 chrXVI 588991 . A G 1080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.536;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.449;QD=20.00;ReadPosRankSum=1.412;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1113,129,0 chrXVI 589021 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.65;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1507,165,0 chrXVI 589172 . C T 1853 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7671;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.36;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1886,207,0 chrXVI 589364 . C A 254.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.503;DP=89;Dels=0.00;FS=25.517;HaplotypeScore=88.2785;MLEAC=1;MLEAF=0.500;MQ=43.53;MQ0=0;MQRankSum=-1.888;QD=2.85;ReadPosRankSum=3.079;SB=-6.330e+02 GT:AD:DP:GQ:PL 0/1:23,66:89:99:284,0,239 chrXVI 589366 . A T 236.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;DP=84;Dels=0.00;FS=28.683;HaplotypeScore=88.2785;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=0;MQRankSum=0.718;QD=2.81;ReadPosRankSum=-2.352;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,24:84:99:266,0,212 chrXVI 589367 . C G,T 350.07 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.211;DP=73;Dels=0.00;FS=11.448;HaplotypeScore=83.3215;MLEAC=1,1;MLEAF=0.500,0.500;MQ=44.86;MQ0=0;MQRankSum=0.943;QD=4.80;ReadPosRankSum=-6.266;SB=-2.407e+01 GT:AD:DP:GQ:PL 1/2:42,26,5:73:45:410,87,45,323,0,311 chrXVI 589380 . A G 1223 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=15.68;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1256,141,0 chrXVI 589469 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=18.71;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1212,138,0 chrXVI 589478 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=20.47;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1159,126,0 chrXVI 589510 . T A 1171 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=19.85;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1204,132,0 chrXVI 589604 . A G 2029 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=99;Dels=0.00;FS=6.045;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.684;QD=20.49;ReadPosRankSum=2.848;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:3,96:99:99:2062,228,0 chrXVI 589655 . G C 1894 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.39;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1927,222,0 chrXVI 589740 . A G 784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=5.643;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;MQRankSum=1.291;QD=14.25;ReadPosRankSum=1.669;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:93:817,93,0 chrXVI 589747 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=15.24;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:81:719,81,0 chrXVI 589764 . T C 529 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=12.02;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:63:562,63,0 chrXVI 589765 . T C 517 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;MQRankSum=1.039;QD=11.49;ReadPosRankSum=1.578;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:63:550,63,0 chrXVI 589781 . T A 500 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=0;QD=9.26;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:60:533,60,0 chrXVI 589795 . G C 609 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.28;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:72:642,72,0 chrXVI 589798 . G A 523 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.46;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:60:556,60,0 chrXVI 589800 . C T 452 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.04;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:54:485,54,0 chrXVI 589802 . T G 516 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.121;QD=10.12;ReadPosRankSum=1.664;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:60:549,60,0 chrXVI 589811 . C T 550 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=9.65;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:63:583,63,0 chrXVI 589832 . T C 396 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;MQRankSum=1.412;QD=7.33;ReadPosRankSum=1.668;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:48:429,48,0 chrXVI 589849 . G A 387 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=6.14;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:45:420,45,0 chrXVI 589870 . T C 317 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=47.1310;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=6.47;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:39:350,39,0 chrXVI 589897 . T A 87.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=53;Dels=0.02;FS=6.106;HaplotypeScore=34.3739;MLEAC=1;MLEAF=0.500;MQ=36.62;MQ0=0;MQRankSum=-1.716;QD=1.64;ReadPosRankSum=-1.845;SB=-5.602e+01 GT:AD:DP:GQ:PL 0/1:28,24:52:22:117,0,22 chrXVI 590012 . C T 1569 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=20.64;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1602,174,0 chrXVI 590060 . T C 1580 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.611;QD=23.24;ReadPosRankSum=1.681;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1613,183,0 chrXVI 590135 . C T 1929 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=23.24;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1962,216,0 chrXVI 590196 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=19.90;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1884,216,0 chrXVI 590216 . T A 2041 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=20.41;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2074,234,0 chrXVI 590239 . T G 1959 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=19.02;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1992,237,0 chrXVI 590262 . A T 2047 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=18.61;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2080,234,0 chrXVI 590286 . C T 2097 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.42;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2130,231,0 chrXVI 590325 . T C 2056 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=105;Dels=0.00;FS=2.421;HaplotypeScore=7.0360;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-2.010;QD=19.58;ReadPosRankSum=2.933;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:3,102:105:99:2089,234,0 chrXVI 590373 . C T 2293 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.84;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2326,252,0 chrXVI 590394 . T G 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.954;QD=20.52;ReadPosRankSum=1.697;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2044,228,0 chrXVI 590397 . G A 1639 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.208;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.797;QD=16.39;ReadPosRankSum=0.035;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1672,179,0 chrXVI 590430 . T G 2281 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=1.003;QD=20.01;ReadPosRankSum=1.641;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2314,255,0 chrXVI 590523 . G A 2324 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.56;SB=-1.300e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2357,258,0 chrXVI 590563 . A G 2171 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=3.882;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-1.197;QD=19.74;ReadPosRankSum=1.701;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2204,252,0 chrXVI 590589 . C T 2445 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.3180;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.45;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2478,267,0 chrXVI 590724 . A G 1976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=13.4879;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.204;QD=16.47;ReadPosRankSum=1.703;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:1,117:120:99:2009,225,0 chrXVI 591000 . A G 1187 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.599;QD=17.46;ReadPosRankSum=2.377;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:2,66:68:99:1220,138,0 chrXVI 591009 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.51;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:61:99:1162,126,0 chrXVI 591334 . G A 1224 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.54;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1257,144,0 chrXVI 591528 . C G 416 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.41;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:51:449,51,0 chrXVI 591529 . G T 427 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.81;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:51:460,51,0 chrXVI 591540 . G A 705 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.58;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,36:36:81:738,81,0 chrXVI 591603 . T G 908 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.53;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:941,105,0 chrXVI 591721 . A G 329 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.946;QD=14.95;ReadPosRankSum=1.576;SB=-7.050e-03 GT:AD:DP:GQ:PL 1/1:1,21:22:42:362,42,0 chrXVI 591748 . T C 836 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=23.89;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,35:35:96:869,96,0 chrXVI 591790 . A G 989 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=23.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1022,117,0 chrXVI 591791 . C T 1016 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=24.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1049,114,0 chrXVI 591826 . A G 1037 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=19.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,50:52:99:1070,126,0 chrXVI 591845 . T A 567 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=19.55;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:66:600,66,0 chrXVI 591899 . G A 709 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:78:742,78,0 chrXVI 591926 . A G 639 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.67;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:75:672,75,0 chrXVI 591978 . G A 476 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.80;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:54:509,54,0 chrXVI 591996 . G A 296 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.67;SB=-8.299e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:329,36,0 chrXVI 592063 . A C 408 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=15.69;SB=-1.540e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:441,51,0 chrXVI 592088 . C A 432 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=11.68;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:51:465,51,0 chrXVI 592112 . G A 370 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=9.02;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:45:403,45,0 chrXVI 592115 . A G 295 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=7.37;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:39:328,39,0 chrXVI 593104 . G A 1611 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.95;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1644,180,0 chrXVI 593195 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.93;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1604,177,0 chrXVI 593197 . G T 1588 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=19.60;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1621,177,0 chrXVI 593234 . T C 956 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;DP=62;Dels=0.00;FS=3.077;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.255;QD=15.42;ReadPosRankSum=2.371;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:99:989,114,0 chrXVI 593372 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.04;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1331,147,0 chrXVI 593408 . T C 1290 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=22.24;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1323,153,0 chrXVI 593438 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.40;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1216,138,0 chrXVI 593464 . T C 1244 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.03;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1277,144,0 chrXVI 593569 . T G 1523 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.31;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1556,177,0 chrXVI 593582 . A G 1547 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.83;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1580,183,0 chrXVI 593633 . A G 1902 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.90;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1935,222,0 chrXVI 593860 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.96;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1560,171,0 chrXVI 593867 . G C 1504 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.12;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1537,174,0 chrXVI 594005 . T C 2106 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2857;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.50;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2139,243,0 chrXVI 594078 . G A 3136 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.33;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:3169,348,0 chrXVI 594115 . G A 2404 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.70;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,119:122:99:2437,273,0 chrXVI 594355 . T C 2161 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.901;QD=21.40;ReadPosRankSum=1.697;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:1,99:101:99:2194,249,0 chrXVI 594386 . G A 2073 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.93;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2106,237,0 chrXVI 594583 . G A 2387 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.63;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:2420,261,0 chrXVI 594633 . G A 2500 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=23.81;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2533,276,0 chrXVI 594667 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=17.42;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1827,207,0 chrXVI 594669 . A C 1705 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.279;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.524;QD=16.72;ReadPosRankSum=1.889;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:2,99:102:99:1738,201,0 chrXVI 594747 . A G 1848 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2971;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.86;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1881,210,0 chrXVI 594764 . C G 1744 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.2100;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.55;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1777,198,0 chrXVI 594777 . A T 1619 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.40;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1652,180,0 chrXVI 594861 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1662,183,0 chrXVI 594974 . A C 1725 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.97;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1758,204,0 chrXVI 594975 . A G 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.339;QD=18.07;ReadPosRankSum=1.696;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1786,204,0 chrXVI 594992 . G C 1723 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.14;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1756,198,0 chrXVI 595063 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.52;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1626,183,0 chrXVI 595421 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.54;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1577,174,0 chrXVI 595439 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.52;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1380,150,0 chrXVI 595451 . C A 1239 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.22;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1272,138,0 chrXVI 595483 . A G 844 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=15.92;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:877,99,0 chrXVI 595531 . T C 905 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.444;QD=18.85;ReadPosRankSum=1.660;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:938,108,0 chrXVI 595601 . A G 1734 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.64;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1767,198,0 chrXVI 595717 . T C 1214 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.97;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1247,147,0 chrXVI 595838 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.12;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1638,177,0 chrXVI 595961 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.20;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1507,165,0 chrXVI 595988 . T C 877 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.895;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.547;QD=11.39;ReadPosRankSum=1.687;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:910,102,0 chrXVI 595999 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=11.74;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:902,99,0 chrXVI 596138 . T C 1016 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.63;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1049,117,0 chrXVI 596239 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.2941;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=16.67;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1150,126,0 chrXVI 596438 . A G 902 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.19;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:935,105,0 chrXVI 596477 . T C 796 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.41;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:93:829,93,0 chrXVI 596587 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.66;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1314,144,0 chrXVI 596625 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.95;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1190,129,0 chrXVI 596663 . C G 1238 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.982;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4782;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.501;QD=20.30;ReadPosRankSum=0.982;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1271,122,0 chrXVI 596701 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.83;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1606,174,0 chrXVI 596886 . T C 1362 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=75;Dels=0.00;FS=12.649;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.861;QD=18.16;ReadPosRankSum=3.336;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:4,71:75:99:1395,159,0 chrXVI 596932 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.56;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1441,159,0 chrXVI 597024 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2239,240,0 chrXVI 597187 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.86;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1781,207,0 chrXVI 597958 . A T 1593 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=15.03;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1626,177,0 chrXVI 597961 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=14.94;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1467,159,0 chrXVI 598117 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.68;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1618,177,0 chrXVI 598282 . G A 1657 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.71;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1690,183,0 chrXVI 598540 . T A 2165 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.53;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2198,240,0 chrXVI 598966 . C T 2213 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.49;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2246,246,0 chrXVI 599378 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.35;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1905,207,0 chrXVI 599542 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.95;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1227,132,0 chrXVI 599572 . C T 892 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.15;SB=-2.230e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:925,99,0 chrXVI 599806 . C T 965 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.92;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:998,108,0 chrXVI 599853 . A T 879 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.98;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:912,99,0 chrXVI 600285 . T G 2388 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.64;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2421,267,0 chrXVI 600385 . A G 579 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.30;SB=-2.520e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:612,72,0 chrXVI 600581 . T C 607 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=14.80;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,36:41:72:640,72,0 chrXVI 600772 . G A 710 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.88;SB=-5.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:81:743,81,0 chrXVI 600877 . C A 498 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,24:25:60:531,60,0 chrXVI 601738 . C G 1607 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.72;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1640,189,0 chrXVI 601953 . A G 845 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=17.98;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:96:878,96,0 chrXVI 601963 . C T 857 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.49;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:96:890,96,0 chrXVI 602136 . C T 1403 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1436,156,0 chrXVI 602251 . A G 920 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.59;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:953,108,0 chrXVI 602623 . C T 1287 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.75;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1320,144,0 chrXVI 603004 . A T 940 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:973,108,0 chrXVI 603106 . C A 687 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.21;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:81:720,81,0 chrXVI 603283 . A C 757 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=16.82;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:90:790,90,0 chrXVI 603540 . C T 1615 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.12;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,68:73:99:1648,177,0 chrXVI 603751 . C A 1189 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.15;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1222,132,0 chrXVI 603846 . T A 2132 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.565;QD=22.44;ReadPosRankSum=1.696;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2165,234,0 chrXVI 604022 . G A 1585 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1618,183,0 chrXVI 604091 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.86;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2250,246,0 chrXVI 604106 . G T 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.277;QD=21.22;ReadPosRankSum=0.927;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2134,212,0 chrXVI 604324 . T C 671.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;DP=110;Dels=0.00;FS=0.734;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=59.79;MQ0=0;MQRankSum=-0.003;QD=6.10;ReadPosRankSum=0.420;SB=-3.660e+02 GT:AD:DP:GQ:PL 0/1:62,45:110:99:701,0,1002 chrXVI 604538 . C T 2461 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.86;SB=-1.517e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2494,276,0 chrXVI 605063 . T A 1292 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.28;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1325,150,0 chrXVI 605225 . T C 1594 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.44;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1627,186,0 chrXVI 605723 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.93;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1042,114,0 chrXVI 605750 . G A 1340 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.94;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1373,153,0 chrXVI 606023 . C T 1288 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.47;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1321,141,0 chrXVI 606730 . G A 2070 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.79;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2103,228,0 chrXVI 606814 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.67;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1687,183,0 chrXVI 606832 . C G 1236 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.17;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:72:99:1269,144,0 chrXVI 607353 . C T 770 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.6953;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.38;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:803,93,0 chrXVI 607493 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=17.85;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:890,99,0 chrXVI 607854 . C T 783 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=11.51;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:93:816,93,0 chrXVI 607904 . G A 892 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=13.72;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:925,102,0 chrXVI 607906 . G A 889 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=13.47;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:922,102,0 chrXVI 607921 . C T 741 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=11.58;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:87:774,87,0 chrXVI 607926 . A G 669 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=8.409;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;MQRankSum=0.209;QD=10.29;ReadPosRankSum=2.374;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:81:702,81,0 chrXVI 608011 . T C 17.84 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.325;QD=0.35;ReadPosRankSum=1.664;SB=-5.538e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:6:49,6,0 chrXVI 608142 . C T 1548 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.10;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1581,171,0 chrXVI 608268 . T C 1873 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=20.81;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1906,213,0 chrXVI 608269 . T C 1897 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.85;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1930,216,0 chrXVI 608465 . C T 941 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=15.95;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:974,114,0 chrXVI 608468 . T C 872 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=6.092;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=-0.824;QD=14.30;ReadPosRankSum=1.619;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:905,102,0 chrXVI 608499 . G A 848 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=14.13;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:96:881,96,0 chrXVI 608511 . T C 750 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=12.10;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:90:783,90,0 chrXVI 608523 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=13.51;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:952,102,0 chrXVI 608544 . C T 1365 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0445;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=15.51;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1398,159,0 chrXVI 608683 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.96;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1548,168,0 chrXVI 608924 . C T 1042 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.66;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1075,117,0 chrXVI 609195 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.88;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2199,237,0 chrXVI 609390 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.46;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1486,159,0 chrXVI 609399 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.562;QD=17.48;ReadPosRankSum=1.597;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1379,159,0 chrXVI 609546 . A G 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.046;QD=15.72;ReadPosRankSum=1.459;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1228,138,0 chrXVI 609547 . A G 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=77;Dels=0.00;FS=2.588;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.365;QD=15.31;ReadPosRankSum=2.879;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:3,72:77:99:1212,135,0 chrXVI 609594 . T C 910 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=6.522;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=0.725;QD=14.44;ReadPosRankSum=2.333;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:943,105,0 chrXVI 609630 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=16.40;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1181,132,0 chrXVI 609903 . A G 1479 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.513;QD=18.49;ReadPosRankSum=1.688;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1512,180,0 chrXVI 610056 . C T 2096 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.23;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2129,228,0 chrXVI 610076 . A G 2018 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.809;QD=18.18;ReadPosRankSum=2.383;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:2,109:111:99:2051,231,0 chrXVI 610223 . C T 1156 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=59.7658;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=0.735;QD=17.52;ReadPosRankSum=-0.997;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1189,110,0 chrXVI 610298 . G A 1159 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.30;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1192,129,0 chrXVI 610635 . A C 1034 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.80;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1067,123,0 chrXVI 610702 . A T 1794 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=85;Dels=0.00;FS=9.441;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.710;QD=21.11;ReadPosRankSum=2.334;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:2,83:85:99:1827,201,0 chrXVI 610743 . C A 2333 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7881;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.94;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2366,264,0 chrXVI 610921 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.54;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2062,222,0 chrXVI 610981 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.72;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1351,147,0 chrXVI 611302 . T C 2459 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.9254;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.15;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2492,282,0 chrXVI 611386 . T C 1658 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.0663;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.82;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1691,192,0 chrXVI 611518 . A C 900 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.65;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:933,108,0 chrXVI 611524 . T C 1026 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.36;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1059,123,0 chrXVI 611686 . T C 2552 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.258;QD=21.45;ReadPosRankSum=1.673;SB=-1.497e+03 GT:AD:DP:GQ:PL 1/1:1,116:119:99:2585,291,0 chrXVI 612448 . C T 2051 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4767;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.93;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2084,228,0 chrXVI 612824 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.65;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1850,213,0 chrXVI 612890 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.09;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1399,159,0 chrXVI 612903 . G A 1222 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.97;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1255,135,0 chrXVI 612915 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.52;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1207,138,0 chrXVI 613008 . T C 836 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.39;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:869,99,0 chrXVI 613080 . T A 1106 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.5628;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.40;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1139,123,0 chrXVI 613096 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=17.98;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1130,126,0 chrXVI 613666 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1450,159,0 chrXVI 613725 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.37;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1599,174,0 chrXVI 613881 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.34;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1721,186,0 chrXVI 613884 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.11;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1722,186,0 chrXVI 613944 . C T 1219 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=16.25;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1252,138,0 chrXVI 614016 . G A 1534 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.18;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1567,171,0 chrXVI 614103 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.45;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1200,138,0 chrXVI 614283 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.21;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1499,171,0 chrXVI 614469 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.75;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1186,129,0 chrXVI 614501 . A T 1233 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.63;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1266,138,0 chrXVI 614587 . T C 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.427;QD=19.38;ReadPosRankSum=1.632;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1370,156,0 chrXVI 614631 . C G 1191 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.90;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1224,138,0 chrXVI 614654 . A T 1495 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=7.874;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.120;QD=19.67;ReadPosRankSum=2.385;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1528,165,0 chrXVI 614701 . A G 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=6.998;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.338;QD=19.96;ReadPosRankSum=2.381;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1450,165,0 chrXVI 614798 . A T 1122 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.37;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1155,126,0 chrXVI 614818 . C T 1136 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=15.56;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1169,126,0 chrXVI 614926 . T C 2104 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.592;QD=20.63;ReadPosRankSum=1.697;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:1,98:102:99:2137,240,0 chrXVI 614945 . C G 2002 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.30;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2035,231,0 chrXVI 615115 . C A 842 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.31;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:93:875,93,0 chrXVI 615151 . A C 943 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.054;QD=13.67;ReadPosRankSum=2.164;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:976,108,0 chrXVI 615159 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=13.65;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:920,99,0 chrXVI 615302 . T C 846 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=12.44;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:879,99,0 chrXVI 615310 . C T 1143 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=15.45;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1176,126,0 chrXVI 615470 . G A 868 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.73;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:96:901,96,0 chrXVI 615999 . T C 1715 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1748,198,0 chrXVI 616149 . C T 2088 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8813;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,89:96:99:2121,228,0 chrXVI 616661 . G A 2315 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.62;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2348,252,0 chrXVI 616836 . T C 1680 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.346;QD=22.40;ReadPosRankSum=1.686;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1713,195,0 chrXVI 616899 . T C 2270 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9516;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.09;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2303,267,0 chrXVI 617130 . T C 1473 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=16.19;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1506,174,0 chrXVI 617214 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.636;QD=18.85;ReadPosRankSum=1.688;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:1,78:82:99:1579,183,0 chrXVI 617271 . A G 1357 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.059;QD=18.85;ReadPosRankSum=1.684;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1390,156,0 chrXVI 617481 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.70;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1473,168,0 chrXVI 617643 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.32;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2015,222,0 chrXVI 618112 . T G 1846 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.74;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1879,219,0 chrXVI 618129 . A G 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.219;QD=22.59;ReadPosRankSum=1.689;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1863,210,0 chrXVI 618229 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.38;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1136,126,0 chrXVI 618231 . C T 1037 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.28;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1070,117,0 chrXVI 618453 . G A 1914 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4304;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.26;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1947,210,0 chrXVI 618585 . G A 2033 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.86;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2066,225,0 chrXVI 618915 . G A 1278 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.51;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1311,141,0 chrXVI 619030 . T C 1600 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.05;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1633,186,0 chrXVI 619062 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.06;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1693,180,0 chrXVI 619148 . T C 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.711;DP=54;Dels=0.00;FS=4.550;HaplotypeScore=101.9705;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=1.465;QD=0.28;ReadPosRankSum=-3.047;SB=1.24 GT:AD:DP:GQ:PL 1/1:49,4:54:6:46,6,0 chrXVI 619169 . A G 1045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.499;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-0.405;QD=22.23;ReadPosRankSum=1.659;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1078,123,0 chrXVI 619252 . T G 608 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.97;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:641,72,0 chrXVI 619292 . C T 799 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.59;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:832,90,0 chrXVI 619408 . A G 893 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.30;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:926,105,0 chrXVI 619457 . C T 664 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=17.03;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:697,75,0 chrXVI 619477 . A G 547 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=15.63;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:66:580,66,0 chrXVI 619527 . G T 722 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=19.00;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:84:755,84,0 chrXVI 619549 . T C 634 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=0.060;QD=21.86;ReadPosRankSum=1.614;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:78:667,78,0 chrXVI 619565 . G C 582 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=22.38;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:69:615,69,0 chrXVI 619612 . A T 662 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=19.47;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:695,75,0 chrXVI 619659 . A G 826 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=20.65;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:859,96,0 chrXVI 619680 . C T 710 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=15.43;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:84:743,84,0 chrXVI 619704 . A G 611 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=3.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=-1.452;QD=16.51;ReadPosRankSum=1.639;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:644,75,0 chrXVI 619779 . T C 850 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.73;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:883,99,0 chrXVI 619798 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.31;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:947,102,0 chrXVI 619894 . G A 734 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=17.90;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:81:767,81,0 chrXVI 619910 . C A 514 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=0;QD=11.95;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:60:547,60,0 chrXVI 619974 . A G 417 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=9.07;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:51:450,51,0 chrXVI 620016 . C A 576 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=15.16;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:609,66,0 chrXVI 620115 . A G 595 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.924;QD=19.83;ReadPosRankSum=1.617;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:69:628,69,0 chrXVI 620227 . C T 600 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=15.38;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:69:633,69,0 chrXVI 620415 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:991,108,0 chrXVI 620644 . G T 1406 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.24;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1439,156,0 chrXVI 620737 . C T 1377 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.57;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1410,153,0 chrXVI 620821 . G T 1972 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.43;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2005,222,0 chrXVI 620863 . T C 2012 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.63;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2045,231,0 chrXVI 621037 . T C 1419 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.575;QD=21.18;ReadPosRankSum=1.680;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1452,171,0 chrXVI 621301 . A T 1875 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.06;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1908,207,0 chrXVI 621305 . T G 1757 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.17;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1790,201,0 chrXVI 621334 . T G 1730 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.44;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1763,198,0 chrXVI 621480 . T C 871 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.74;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:904,105,0 chrXVI 621650 . A G 962 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.38;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:995,114,0 chrXVI 621728 . C T 1015 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.12;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1048,114,0 chrXVI 621855 . A T 965 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.64;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:998,108,0 chrXVI 622057 . A G 690 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=4.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;MQRankSum=-1.733;QD=17.69;ReadPosRankSum=1.644;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:84:723,84,0 chrXVI 622060 . T C 687 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;MQRankSum=0.953;QD=17.17;ReadPosRankSum=1.646;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:84:720,84,0 chrXVI 622074 . T C 496 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=14.17;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:63:529,63,0 chrXVI 622087 . T G 444 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=12.69;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:57:477,57,0 chrXVI 622097 . T A 612 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.01;MQ0=0;QD=15.30;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:72:645,72,0 chrXVI 622139 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.22;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1017,111,0 chrXVI 622165 . T C 1046 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.73;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1079,129,0 chrXVI 622243 . T C 1028 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.265;DP=58;Dels=0.00;FS=9.299;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=0.953;QD=17.72;ReadPosRankSum=3.202;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:4,53:58:99:1061,117,0 chrXVI 622262 . T C 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=1.057;QD=19.30;ReadPosRankSum=1.687;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1519,174,0 chrXVI 622365 . G C 784 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=18.23;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:817,96,0 chrXVI 622376 . A C 692 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=20.35;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:725,84,0 chrXVI 622409 . G T 367 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.60;MQ0=0;QD=16.68;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:45:400,45,0 chrXVI 622429 . A G 184.01 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=12.27;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,15:15:27:217,27,0 chrXVI 622481 . A G 291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=1.519;QD=18.19;ReadPosRankSum=1.519;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:1,15:16:36:324,36,0 chrXVI 622687 . A T 413 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=13.32;SB=-6.657e-03 GT:AD:DP:GQ:PL 1/1:0,31:31:48:446,48,0 chrXVI 622693 . T C 538 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.82;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,34:34:63:571,63,0 chrXVI 622781 . G C 1444 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=26.25;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1477,165,0 chrXVI 622904 . T A 785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=39;Dels=0.00;FS=2.551;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.501;QD=20.13;ReadPosRankSum=2.714;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:3,36:39:96:818,96,0 chrXVI 622932 . T C 859 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.61;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:892,99,0 chrXVI 623041 . T G 1152 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.512;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-1.039;QD=17.72;ReadPosRankSum=1.679;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1185,135,0 chrXVI 623043 . T C 1068 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=69;Dels=0.01;FS=13.382;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.299;QD=15.48;ReadPosRankSum=2.897;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1101,123,0 chrXVI 623045 . C T 1102 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=15.74;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1135,123,0 chrXVI 623051 . A C 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.43;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1150,135,0 chrXVI 623258 . G A 914 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.45;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:947,102,0 chrXVI 623271 . T A 813 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=3.711;HaplotypeScore=37.6882;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-1.732;QD=17.30;ReadPosRankSum=1.585;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:93:846,93,0 chrXVI 623516 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.08;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1478,162,0 chrXVI 623671 . A C 1222 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.239;QD=21.07;ReadPosRankSum=0.358;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1255,144,0 chrXVI 624175 . T C 1247 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.11;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1280,144,0 chrXVI 624238 . G C 1797 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1830,204,0 chrXVI 624388 . A T 2411 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.87;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2444,261,0 chrXVI 624655 . A G 2231 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.09;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2264,252,0 chrXVI 624739 . G A 2082 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.66;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2115,231,0 chrXVI 624882 . C G 1135 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.27;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1168,132,0 chrXVI 624994 . T A 1122 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.53;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1155,126,0 chrXVI 625108 . C A 1565 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.41;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1598,177,0 chrXVI 625225 . G A 1639 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.76;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1672,183,0 chrXVI 625320 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1688,189,0 chrXVI 625519 . G A 1623 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.29;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1656,180,0 chrXVI 626374 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.01;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2014,219,0 chrXVI 626641 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.96;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2003,219,0 chrXVI 626923 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.88;SB=-1.266e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2090,231,0 chrXVI 627121 . C A 1713 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.54;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1746,198,0 chrXVI 627237 . A T 1513 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.311;QD=20.17;ReadPosRankSum=1.685;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1546,174,0 chrXVI 627340 . T A 1096 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.90;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1129,126,0 chrXVI 627372 . T C 1124 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=18.43;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1157,132,0 chrXVI 627414 . A T 973 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=11.87;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1006,111,0 chrXVI 627421 . G A 948 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=12.15;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:981,108,0 chrXVI 627426 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=11.49;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:952,105,0 chrXVI 627437 . A T 934 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=11.82;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:967,105,0 chrXVI 627439 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4425;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=11.77;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:963,105,0 chrXVI 627508 . T G 817 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;DP=62;Dels=0.00;FS=3.082;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.182;QD=13.18;ReadPosRankSum=2.369;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:2,60:62:96:850,96,0 chrXVI 627514 . C G 827 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1886;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=15.60;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:53:99:860,102,0 chrXVI 627537 . C G 714 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=14.57;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:747,87,0 chrXVI 627833 . G A 2427 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.27;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2460,276,0 chrXVI 627865 . T C 2531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.189;QD=23.01;ReadPosRankSum=1.701;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:1,109:110:99:2564,291,0 chrXVI 628182 . G A 2311 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=11.0413;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.40;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2344,252,0 chrXVI 628338 . A C 1972 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=8.487;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.953;QD=16.43;ReadPosRankSum=1.646;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2005,228,0 chrXVI 628342 . C A 2035 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.41;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2068,225,0 chrXVI 628893 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7664;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.43;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1995,219,0 chrXVI 628959 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8802;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.08;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:1913,213,0 chrXVI 629370 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.07;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1463,159,0 chrXVI 629565 . T A 1909 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.86;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1942,210,0 chrXVI 629640 . G C 1239 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.49;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1272,144,0 chrXVI 629722 . A C 1364 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.77;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1397,159,0 chrXVI 629845 . A G 1027 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.30;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1060,117,0 chrXVI 630376 . A T 2207 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.00;FS=2.585;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.467;QD=20.25;ReadPosRankSum=2.404;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:2,107:109:99:2240,243,0 chrXVI 630417 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=73.0107;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.72;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1575,177,0 chrXVI 630573 . G A 2269 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4136;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.01;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2302,252,0 chrXVI 630684 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.76;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2218,246,0 chrXVI 630884 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=18.28;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1258,138,0 chrXVI 631285 . C T 40.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=18;Dels=0.00;FS=9.294;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=1.531;QD=2.28;ReadPosRankSum=-1.531;SB=-2.298e+01 GT:AD:DP:GQ:PL 1/1:1,17:18:9:73,9,0 chrXVI 631527 . T G 1293 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.94;SB=-1.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1326,153,0 chrXVI 631831 . A G 2611 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.52;SB=-1.400e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2644,303,0 chrXVI 633138 . T G 1107 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.77;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1140,132,0 chrXVI 633265 . A G 1230 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.732;QD=20.50;ReadPosRankSum=1.615;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1263,144,0 chrXVI 633533 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.32;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1035,114,0 chrXVI 634542 . T C 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.406;QD=21.40;ReadPosRankSum=1.691;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,84:87:99:1895,216,0 chrXVI 635040 . C A 3168 PASS AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,139:139:99:3201,357,0 chrXVI 635799 . G A 2407 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.37;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2440,267,0 chrXVI 635876 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.01;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1575,177,0 chrXVI 635901 . C T 1333 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.16;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1366,147,0 chrXVI 635910 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.59;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1223,135,0 chrXVI 636045 . C T 2106 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.25;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2139,234,0 chrXVI 636312 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.11;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1696,189,0 chrXVI 636479 . G A 2028 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.05;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2061,222,0 chrXVI 636736 . A G 1263 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.79;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1296,150,0 chrXVI 636742 . A G 1292 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.960;HaplotypeScore=4.7269;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=-1.342;QD=18.20;ReadPosRankSum=1.635;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1325,147,0 chrXVI 637276 . T A 2605 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=14.4086;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.73;SB=-1.450e+03 GT:AD:DP:GQ:PL 1/1:0,132:132:99:2638,294,0 chrXVI 638366 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.74;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1665,180,0 chrXVI 638372 . A G 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=1.463;QD=16.89;ReadPosRankSum=1.655;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1570,180,0 chrXVI 638483 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.51;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:2141,243,0 chrXVI 638684 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.0677;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.32;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,94:95:99:1963,219,0 chrXVI 638780 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.29;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1788,204,0 chrXVI 638861 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.45;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1881,213,0 chrXVI 638918 . A G 1967 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.318;QD=19.87;ReadPosRankSum=1.661;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:2000,225,0 chrXVI 638923 . T C 1876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.147;QD=19.75;ReadPosRankSum=1.658;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1909,216,0 chrXVI 638973 . G C 1345 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=15.64;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1378,162,0 chrXVI 639173 . A T 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=82;Dels=0.01;FS=4.063;HaplotypeScore=16.0111;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.636;QD=18.39;ReadPosRankSum=1.469;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1541,177,0 chrXVI 639358 . C A 478 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=19.5958;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=11.12;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:57:511,57,0 chrXVI 639361 . G A 172.03 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=19.5958;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=3.74;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:24:205,24,0 chrXVI 639417 . C T 525 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=11.17;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:63:558,63,0 chrXVI 639423 . C G 642 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=11.26;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:75:675,75,0 chrXVI 639626 . C T 1536 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.29;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1569,171,0 chrXVI 639648 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.94;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1768,192,0 chrXVI 639980 . T C 2547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.4453;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.580;QD=18.46;ReadPosRankSum=1.682;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:1,136:138:99:2580,294,0 chrXVI 640419 . T C 1130 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=13.61;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1163,129,0 chrXVI 640589 . A G 1657 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9370;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.27;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1690,201,0 chrXVI 640976 . C A 1935 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5930;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.55;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1968,213,0 chrXVI 641225 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.95;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1446,168,0 chrXVI 641294 . A G 756 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:93:789,93,0 chrXVI 641549 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.18;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1608,174,0 chrXVI 642177 . T A 445 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-6.586e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:51:478,51,0 chrXVI 642462 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.2709;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.79;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1606,174,0 chrXVI 642510 . T C 1417 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.161;QD=20.54;ReadPosRankSum=2.271;SB=-2.080e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1450,168,0 chrXVI 642513 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.36;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1369,153,0 chrXVI 642612 . T C 2795 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=125;Dels=0.00;FS=2.563;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.911;QD=22.36;ReadPosRankSum=2.944;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:3,122:125:99:2828,315,0 chrXVI 642789 . C T 2161 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=15.1149;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.47;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2194,243,0 chrXVI 643551 . T A 360 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:42:393,42,0 chrXVI 644568 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=16.42;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:1757,198,0 chrXVI 644801 . A G 2245 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.25;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2278,264,0 chrXVI 645683 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.71;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1413,153,0 chrXVI 645864 . T C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.099;QD=21.77;ReadPosRankSum=2.717;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:3,79:82:99:1818,210,0 chrXVI 645899 . C A 1383 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=24.26;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1416,153,0 chrXVI 646196 . C T 443 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=10.80;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,39:41:51:476,51,0 chrXVI 646408 . T G 292 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=35.6332;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=7.30;SB=-8.701e-03 GT:AD:DP:GQ:PL 1/1:0,40:40:36:325,36,0 chrXVI 646670 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.32;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1440,168,0 chrXVI 647322 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.96;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1490,168,0 chrXVI 647721 . T C 2658 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3273;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.10;SB=-1.427e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2691,309,0 chrXVI 648123 . A G 2478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=114;Dels=0.00;FS=12.590;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.195;QD=21.74;ReadPosRankSum=2.903;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:3,111:114:99:2511,291,0 chrXVI 648366 . T C 1984 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.11;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:2017,225,0 chrXVI 648390 . A T 2000 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.61;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2033,231,0 chrXVI 649375 . G T 2415 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.2395;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.80;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2448,270,0 chrXVI 649438 . C T 2321 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.34;SB=-1.426e+03 GT:AD:DP:GQ:PL 1/1:0,119:120:99:2354,261,0 chrXVI 649447 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2072;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.12;SB=-1.442e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:2244,252,0 chrXVI 649499 . T C 1635 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=10.2737;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.511;QD=17.21;ReadPosRankSum=1.548;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:1,93:95:99:1668,189,0 chrXVI 649597 . G A 2929 PASS AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.20;SB=-1.673e+03 GT:AD:DP:GQ:PL 1/1:0,145:145:99:2962,321,0 chrXVI 649723 . C T 2086 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.29;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,96:98:99:2119,228,0 chrXVI 649819 . T C 858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.82;SB=-8.201e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:891,105,0 chrXVI 650376 . C T 168.06 PASS AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=15.28;SB=-2.807e+01 GT:AD:DP:GQ:PL 1/1:0,11:11:21:201,21,0 chrXVI 650468 . T C 69.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=9.93;SB=-5.326e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:12:102,12,0 chrXVI 650762 . C T 1252 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1285,147,0 chrXVI 650823 . A G 1231 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:58:99:1264,147,0 chrXVI 651044 . T C 1386 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.376;QD=20.38;ReadPosRankSum=1.681;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1419,162,0 chrXVI 651827 . C T 2156 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.73;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2189,237,0 chrXVI 651959 . A T 1404 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.02;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1437,159,0 chrXVI 652186 . T C 2323 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2356,264,0 chrXVI 652427 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.00;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:81:99:1572,180,0 chrXVI 652661 . C T 3475.01 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0809;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.72;SB=-1.623e+03 GT:AD:DP:GQ:PL 1/1:0,158:160:99:3475,375,0 chrXVI 652718 . A G 2663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=3.445;HaplotypeScore=7.9339;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.017;QD=21.13;ReadPosRankSum=1.705;SB=-1.372e+03 GT:AD:DP:GQ:PL 1/1:1,125:126:99:2696,306,0 chrXVI 652772 . A G 2929 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.36;SB=-1.452e+03 GT:AD:DP:GQ:PL 1/1:0,127:131:99:2962,336,0 chrXVI 652898 . A G 1601 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.375;HaplotypeScore=4.5760;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.175;QD=18.19;ReadPosRankSum=-0.259;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:1,87:88:99:1634,189,0 chrXVI 652985 . T C 1722 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.52;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1755,201,0 chrXVI 653303 . A G 2236 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.92;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2269,258,0 chrXVI 653739 . T C 1349 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.854;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.357;QD=19.55;ReadPosRankSum=1.681;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:1,67:69:99:1382,156,0 chrXVI 653760 . G C 1333 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.04;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1366,156,0 chrXVI 653824 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.24;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:93:854,93,0 chrXVI 653873 . C T 661 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.03;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:75:694,75,0 chrXVI 653882 . A G 769 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.24;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:802,90,0 chrXVI 653921 . A G 783 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.80;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:816,93,0 chrXVI 653974 . G A 749 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=51.4787;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=12.91;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:87:782,87,0 chrXVI 654370 . C T 1650 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.62;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1683,189,0 chrXVI 654445 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.48;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1719,195,0 chrXVI 654498 . A C 1128 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.433;QD=17.62;ReadPosRankSum=1.678;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1161,132,0 chrXVI 654514 . A G 985 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.738;QD=16.69;ReadPosRankSum=2.367;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1018,114,0 chrXVI 654906 . A T 78.51 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.731;QD=15.70;ReadPosRankSum=0.731;SB=-2.655e+01 GT:AD:DP:GQ:PL 1/1:1,4:5:12:111,12,0 chrXVI 654989 . G T 44.97 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.50;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,6:6:9:77,9,0 chrXVI 655107 . T C 68.51 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=11.3119;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=3.81;SB=-2.952e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:12:101,12,0 chrXVI 655141 . C T 575 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.5960;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.91;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:66:608,66,0 chrXVI 655349 . C T 1336 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.03;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1369,150,0 chrXVI 655575 . A C 1588 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1621,183,0 chrXVI 656010 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.25;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2497,282,0 chrXVI 656175 . T C 1655 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.39;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,99:101:99:1688,192,0 chrXVI 656181 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=16.34;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:1618,186,0 chrXVI 656562 . G A 958 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=12.61;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:991,111,0 chrXVI 656563 . G A 1039 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=13.49;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1072,114,0 chrXVI 656677 . C T 2185 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.81;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2218,237,0 chrXVI 656784 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.72;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1815,213,0 chrXVI 656861 . G A 1987 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.48;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,95:97:99:2020,219,0 chrXVI 657450 . G T 1771 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.59;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1804,198,0 chrXVI 657485 . A G 1008 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=3.729;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=-1.556;QD=17.08;ReadPosRankSum=1.615;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1041,114,0 chrXVI 657494 . G A 777 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=14.13;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:87:810,87,0 chrXVI 657502 . A C 661 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.707;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;MQRankSum=-1.412;QD=12.24;ReadPosRankSum=1.668;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:81:694,81,0 chrXVI 657509 . T G 502 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=11.67;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:63:535,63,0 chrXVI 658141 . T C 1698 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.49;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1731,192,0 chrXVI 658323 . C T 1195 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.96;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1228,135,0 chrXVI 658638 . T G 1621 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4426;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.26;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1654,195,0 chrXVI 658902 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.29;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1348,153,0 chrXVI 659170 . A G 1716 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1749,207,0 chrXVI 659320 . C A 2007 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.13;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2040,222,0 chrXVI 659394 . C T 2037 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.52;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2070,234,0 chrXVI 659469 . C G 1556 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1589,180,0 chrXVI 659728 . C A 1781 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1814,198,0 chrXVI 659822 . C A 1804 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1837,201,0 chrXVI 660020 . G A 1417 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.49;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1450,156,0 chrXVI 660697 . C T 500 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.62;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:57:533,57,0 chrXVI 660801 . T C 611 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:75:644,75,0 chrXVI 661094 . C T 1031 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1064,117,0 chrXVI 661245 . A T 820 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.16;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:853,93,0 chrXVI 661400 . C A 1410 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8233;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.74;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1443,159,0 chrXVI 661680 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.03;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1852,207,0 chrXVI 662132 . A C 1385 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.176;QD=19.79;ReadPosRankSum=1.682;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1418,165,0 chrXVI 662220 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1954,225,0 chrXVI 662454 . A G 1860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.708;DP=101;Dels=0.00;FS=10.567;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.354;QD=18.42;ReadPosRankSum=2.889;SB=-1.051e+03 GT:AD:DP:GQ:PL 1/1:3,97:101:99:1893,210,0 chrXVI 662874 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.53;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1723,192,0 chrXVI 663036 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.55;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1874,210,0 chrXVI 663543 . C T 1471 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1504,162,0 chrXVI 663663 . T C 1299 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.56;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,68:70:99:1332,153,0 chrXVI 663708 . C T 885 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=14.05;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:918,102,0 chrXVI 663729 . G A 798 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=13.30;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:93:831,93,0 chrXVI 664041 . G A 1418 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.45;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1451,156,0 chrXVI 664160 . A C 1536 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1569,177,0 chrXVI 664316 . T C 2058 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.44;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:2091,240,0 chrXVI 664348 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2636;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.17;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1896,216,0 chrXVI 664678 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.65;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1674,192,0 chrXVI 664680 . T C 1622 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=5.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.423;QD=18.02;ReadPosRankSum=1.694;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1655,189,0 chrXVI 664822 . A G 2154 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0849;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.57;SB=-1.435e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2187,243,0 chrXVI 664861 . G A 1941 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=17.97;SB=-1.101e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:1974,228,0 chrXVI 665235 . G A 2040 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2073,225,0 chrXVI 665344 . T C 819 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.05;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:96:852,96,0 chrXVI 665361 . T G 609 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=16.46;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,37:37:72:642,72,0 chrXVI 665441 . A G 1561 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7985;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.541;QD=16.26;ReadPosRankSum=1.696;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,95:96:99:1594,180,0 chrXVI 665472 . T C 1449 filter AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1482,177,0 chrXVI 665970 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.51;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1603,180,0 chrXVI 666286 . T C 2287 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.42;SB=-1.258e+03 GT:AD:DP:GQ:PL 1/1:0,108:112:99:2320,267,0 chrXVI 666333 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.39;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1492,162,0 chrXVI 666337 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=14.83;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,83:87:99:1323,150,0 chrXVI 666888 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.34;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1335,144,0 chrXVI 666903 . C T 1325 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.40;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1358,147,0 chrXVI 666924 . T C 1297 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=7.112;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.472;QD=16.01;ReadPosRankSum=2.389;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1330,153,0 chrXVI 667377 . C T 1384 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=4.2151;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.676;QD=21.97;ReadPosRankSum=0.447;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1417,159,0 chrXVI 667823 . C T 2310 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.2681;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.00;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2343,255,0 chrXVI 667858 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.62;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2281,249,0 chrXVI 669013 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.59;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1502,177,0 chrXVI 669226 . A C 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.315;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.917;QD=21.96;ReadPosRankSum=1.681;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1526,171,0 chrXVI 669627 . T A 2249 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.45;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2282,255,0 chrXVI 670510 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.48;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1472,168,0 chrXVI 670534 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.99;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1638,192,0 chrXVI 670810 . C G 980 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.22;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1013,117,0 chrXVI 670986 . C T 2425 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2458,267,0 chrXVI 671194 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.12;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1869,216,0 chrXVI 671392 . G A 1348 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1381,150,0 chrXVI 671806 . G A 2074 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2107,228,0 chrXVI 671978 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.36;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1806,198,0 chrXVI 672103 . T C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.827;QD=18.30;ReadPosRankSum=1.457;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,87:89:99:1662,183,0 chrXVI 672136 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.18;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1578,180,0 chrXVI 672182 . T C 1624 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8546;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.85;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1657,186,0 chrXVI 672385 . G A 2840 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.68;SB=-1.448e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2873,315,0 chrXVI 672427 . A G 2843 PASS AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.70;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,131:131:99:2876,321,0 chrXVI 672733 . G A 2108 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.52;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2141,234,0 chrXVI 672815 . G C 1804 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.41;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1837,216,0 chrXVI 672824 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=17.83;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1691,195,0 chrXVI 672828 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=17.18;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1785,195,0 chrXVI 672860 . C G 1760 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.53;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,93:95:99:1793,201,0 chrXVI 672902 . A T 1854 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=98;Dels=0.00;FS=3.240;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.125;QD=18.92;ReadPosRankSum=1.661;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1887,210,0 chrXVI 672984 . A G 2219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.107;QD=19.46;ReadPosRankSum=1.701;SB=-1.410e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2252,246,0 chrXVI 672989 . T C 2038 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=18.20;SB=-1.339e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2071,234,0 chrXVI 673059 . A C 1629 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=87;Dels=0.00;FS=6.708;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.387;QD=18.72;ReadPosRankSum=2.364;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:2,84:87:99:1662,186,0 chrXVI 673106 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.2879;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.34;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2252,249,0 chrXVI 673135 . A G 1941 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.01;FS=3.721;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=-0.425;QD=18.14;ReadPosRankSum=1.667;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:1974,222,0 chrXVI 673136 . A T 1972 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.96;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2005,219,0 chrXVI 673678 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.87;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1603,189,0 chrXVI 673707 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.87;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1848,201,0 chrXVI 673927 . A G 1676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DP=87;Dels=0.00;FS=3.434;HaplotypeScore=6.6962;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.611;QD=19.26;ReadPosRankSum=1.490;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,85:87:99:1709,198,0 chrXVI 674227 . A G 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.382;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.993;QD=15.32;ReadPosRankSum=1.654;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1412,162,0 chrXVI 674290 . A G 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.193;QD=18.92;ReadPosRankSum=1.694;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1736,198,0 chrXVI 674320 . A G 2300 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.70;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2333,264,0 chrXVI 674569 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.68;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1398,153,0 chrXVI 674736 . G A 3500.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.18;SB=-1.582e+03 GT:AD:DP:GQ:PL 1/1:0,149:151:99:3500,384,0 chrXVI 674774 . C T 2931 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.55;SB=-1.729e+03 GT:AD:DP:GQ:PL 1/1:0,128:130:99:2964,321,0 chrXVI 674810 . G A 1763 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.18;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1796,201,0 chrXVI 674834 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.22;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1513,162,0 chrXVI 674847 . G C 1304 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.16;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1337,153,0 chrXVI 674888 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.18;SB=-1.063e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1560,177,0 chrXVI 674900 . T C 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.367;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=0.684;QD=17.19;ReadPosRankSum=1.687;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1357,153,0 chrXVI 674984 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.84;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1501,171,0 chrXVI 675011 . C T 1381 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.71;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,74:78:99:1414,153,0 chrXVI 675019 . A G 1390 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.05;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1423,165,0 chrXVI 675104 . G A 1204 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.24;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1237,138,0 chrXVI 675600 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.802;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.660;QD=20.62;ReadPosRankSum=1.660;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1023,117,0 chrXVI 675811 . A G 37.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.271;DP=21;Dels=0.00;FS=5.566;HaplotypeScore=34.4300;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;MQRankSum=1.445;QD=1.81;ReadPosRankSum=-2.436;SB=2.03 GT:AD:DP:GQ:PL 1/1:16,5:21:9:70,9,0 chrXVI 675826 . G A 399 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=27.3325;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=13.76;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,28:29:48:432,48,0 chrXVI 675863 . T G 801 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=8.9881;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=16.69;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:834,93,0 chrXVI 675869 . A C 813 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=16.94;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:846,93,0 chrXVI 675945 . A G 827 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.67;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:96:860,96,0 chrXVI 676046 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.24;SB=-1.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1295,141,0 chrXVI 676149 . C T 2198 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.70;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2231,243,0 chrXVI 676361 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.88;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1484,174,0 chrXVI 676928 . A G 1274 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6435;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.070;QD=18.46;ReadPosRankSum=1.630;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1307,150,0 chrXVI 677025 . C T 947 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.03;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:980,108,0 chrXVI 677784 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.6243;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.60;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1804,201,0 chrXVI 677786 . G A 1739 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.771;HaplotypeScore=3.6243;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.701;QD=20.70;ReadPosRankSum=1.526;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1772,195,0 chrXVI 677796 . A G 1815 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.71;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1848,213,0 chrXVI 677836 . T C 1895 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7995;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=0.523;QD=17.55;ReadPosRankSum=1.699;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:1928,219,0 chrXVI 678208 . G A 2705 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.12;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2738,294,0 chrXVI 678266 . G C 2133 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2694;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.45;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2166,249,0 chrXVI 678464 . G C 1628 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1661,189,0 chrXVI 678562 . G T 1399 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=15.54;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:1,88:90:99:1432,156,0 chrXVI 678569 . T C 1284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.465;QD=15.66;ReadPosRankSum=1.648;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1317,153,0 chrXVI 679094 . T C 1392 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.4580;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.477;QD=19.89;ReadPosRankSum=1.682;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:1,68:70:99:1425,162,0 chrXVI 679562 . C T 2616 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2649,291,0 chrXVI 679897 . G A 1615 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.56;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1648,177,0 chrXVI 680151 . A G 2326 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.77;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2359,270,0 chrXVI 680253 . G T 1883 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.84;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1916,210,0 chrXVI 680463 . G A 2180 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=17.30;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2213,243,0 chrXVI 680553 . T C 1621 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0439;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.54;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1654,189,0 chrXVI 680556 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.731;QD=16.72;ReadPosRankSum=1.694;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:1538,177,0 chrXVI 680822 . T C 490 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=8.45;SB=-7.901e+01 GT:AD:DP:GQ:PL 1/1:0,56:58:57:523,57,0 chrXVI 680837 . T C 653 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=10.88;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,56:60:78:686,78,0 chrXVI 681023 . A T 735 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.37;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:84:768,84,0 chrXVI 681090 . A G 931 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.65;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:99:964,108,0 chrXVI 681108 . G T 1047 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=17.16;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1080,120,0 chrXVI 681176 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.50;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1398,162,0 chrXVI 681366 . A G 2082 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.15;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2115,240,0 chrXVI 681443 . G T 1584 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.41;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1617,177,0 chrXVI 681479 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.46;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1220,138,0 chrXVI 681719 . A G 2017 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=2.758;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.831;QD=18.01;ReadPosRankSum=2.272;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2050,237,0 chrXVI 681803 . G A 1726 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.56;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1759,192,0 chrXVI 681810 . A G 1619 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=97;Dels=0.00;FS=7.542;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.495;QD=16.69;ReadPosRankSum=2.399;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:1652,189,0 chrXVI 682109 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.43;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1305,138,0 chrXVI 682218 . G T 1816 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.87;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1849,201,0 chrXVI 682272 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.57;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1679,183,0 chrXVI 682348 . G T 1485 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1518,165,0 chrXVI 682423 . A G 1882 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.52;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1915,216,0 chrXVI 682597 . T C 722 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=5.714;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.634;QD=17.61;ReadPosRankSum=1.395;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:87:755,87,0 chrXVI 682729 . C G 975 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=15.98;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:1008,111,0 chrXVI 682840 . G A 641 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=14.91;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:75:674,75,0 chrXVI 682857 . G A 1065 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.73;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1098,120,0 chrXVI 683164 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2025,231,0 chrXVI 683296 . A G 2043 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.682;QD=20.64;ReadPosRankSum=1.697;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:1,98:99:99:2076,234,0 chrXVI 683503 . C T 2698 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.93;SB=-1.413e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2731,297,0 chrXVI 683733 . A G 1506 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.579;QD=18.14;ReadPosRankSum=2.301;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:2,81:83:99:1539,177,0 chrXVI 683961 . T C 1343 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.35;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1376,153,0 chrXVI 684147 . C T 815 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=16.98;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:93:848,93,0 chrXVI 684164 . A G 791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=3.522;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=0.500;QD=17.58;ReadPosRankSum=1.655;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:93:824,93,0 chrXVI 684375 . G A 1339 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.17;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1372,150,0 chrXVI 684479 . T C 855 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.545;QD=23.11;ReadPosRankSum=1.639;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:99:888,102,0 chrXVI 685030 . A T 1378 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=67;Dels=0.00;FS=3.680;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.962;QD=20.57;ReadPosRankSum=1.677;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1411,156,0 chrXVI 685465 . C T 1390 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.86;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1423,153,0 chrXVI 685589 . T A 603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.405;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.075;QD=13.11;ReadPosRankSum=1.582;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:69:636,69,0 chrXVI 685590 . T A 594 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=12.91;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:627,69,0 chrXVI 685867 . T C 1236 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.052;QD=18.45;ReadPosRankSum=1.627;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:1,65:67:99:1269,147,0 chrXVI 685870 . A G 1139 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=4.307;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=0.056;QD=18.37;ReadPosRankSum=1.676;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1172,129,0 chrXVI 685871 . A G 1133 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=61;Dels=0.00;FS=8.301;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-1.864;QD=18.57;ReadPosRankSum=2.325;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:2,57:61:99:1166,129,0 chrXVI 685954 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.12;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1279,138,0 chrXVI 686122 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.49;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2171,234,0 chrXVI 686511 . T C 1893 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.54;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1926,216,0 chrXVI 686590 . C T 1258 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.06;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1291,144,0 chrXVI 686779 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1471,165,0 chrXVI 687317 . G C 2200 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2233,249,0 chrXVI 687405 . C G 3397.01 PASS AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.65;SB=-1.314e+03 GT:AD:DP:GQ:PL 1/1:0,149:150:99:3397,390,0 chrXVI 687565 . A G 2612 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.52;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2645,303,0 chrXVI 687602 . G A 2498 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1389;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.57;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2531,276,0 chrXVI 687687 . C T 2190 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=10.1281;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.80;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,121:123:99:2223,240,0 chrXVI 687758 . A G 2076 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=12.1604;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.571;QD=18.54;ReadPosRankSum=2.406;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2109,246,0 chrXVI 687807 . T G 1577 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=17.33;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1610,183,0 chrXVI 687811 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.16;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1595,174,0 chrXVI 687832 . A T 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.298;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.487;QD=19.04;ReadPosRankSum=3.343;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:4,75:79:99:1537,174,0 chrXVI 687880 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.76;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2057,237,0 chrXVI 688111 . C A 600 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=13.04;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:69:633,69,0 chrXVI 688115 . C T 549 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=10.98;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:63:582,63,0 chrXVI 688156 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=15.17;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:913,99,0 chrXVI 688161 . G A 919 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=15.07;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:952,102,0 chrXVI 688249 . A G 934 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.06;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:967,108,0 chrXVI 688296 . C A 939 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.78;SB=-2.740e+02 GT:AD:DP:GQ:PL 1/1:0,48:50:99:972,105,0 chrXVI 688591 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.74;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1772,198,0 chrXVI 688667 . A T 1181 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.05;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1214,132,0 chrXVI 688954 . A G 1824 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.52;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1857,213,0 chrXVI 689032 . C A 1727 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.99;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1760,189,0 chrXVI 689427 . A G 1361 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=86;Dels=0.00;FS=21.784;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.500;QD=15.83;ReadPosRankSum=3.719;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:5,76:86:99:1394,159,0 chrXVI 689448 . A T 1772 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7676;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.91;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1805,198,0 chrXVI 689474 . C T 1703 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.35;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1736,186,0 chrXVI 689525 . T A 1164 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=15.32;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1197,132,0 chrXVI 689532 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.21;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1255,138,0 chrXVI 690349 . T A 1183 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.724;QD=21.12;ReadPosRankSum=1.543;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1216,132,0 chrXVI 690613 . A G 1217 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.54;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1250,141,0 chrXVI 691459 . A C 1284 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=18.08;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1317,150,0 chrXVI 691465 . T C 1272 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.19;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1305,150,0 chrXVI 691468 . G A 1274 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=17.69;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1307,144,0 chrXVI 691472 . G C 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=15.73;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1150,132,0 chrXVI 691540 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.87;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1599,180,0 chrXVI 691669 . A G 1134 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.22;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1167,135,0 chrXVI 692056 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.82;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1262,147,0 chrXVI 692119 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.30;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1698,195,0 chrXVI 692167 . G A 1977 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.9501;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.97;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2010,219,0 chrXVI 692478 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.09;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1560,177,0 chrXVI 692510 . C A 1377 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.96;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1410,150,0 chrXVI 692547 . A G 1219 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=2.691;HaplotypeScore=6.8631;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.882;QD=19.05;ReadPosRankSum=2.372;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,61:64:99:1252,144,0 chrXVI 693141 . C T 1646 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=16.80;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1679,186,0 chrXVI 693567 . T G 1801 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=4.027;HaplotypeScore=3.6875;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-0.552;QD=19.79;ReadPosRankSum=1.656;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1834,207,0 chrXVI 693600 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.04;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1413,153,0 chrXVI 693603 . A G 1346 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=15.84;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,82:85:99:1379,153,0 chrXVI 694413 . C T 2963 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.0904;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=23.33;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2996,324,0 chrXVI 694434 . C A 2619 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.5574;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=20.46;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2652,294,0 chrXVI 694716 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0888;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.21;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1589,180,0 chrXVI 694965 . G T 2107 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.26;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:2140,240,0 chrXVI 694969 . G T 2102 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.83;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2135,237,0 chrXVI 695201 . A C 907 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.90;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:940,111,0 chrXVI 695213 . A G 884 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.42;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:917,105,0 chrXVI 695215 . G T 903 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=19.21;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:936,102,0 chrXVI 695230 . C A 849 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=16.98;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:882,99,0 chrXVI 695419 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.74;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1446,156,0 chrXVI 695434 . T C 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=6.564;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;MQRankSum=-1.325;QD=19.41;ReadPosRankSum=1.681;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1353,150,0 chrXVI 695444 . A G 1289 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.764;QD=18.96;ReadPosRankSum=1.681;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1322,147,0 chrXVI 695522 . G A 986 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.91;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1019,111,0 chrXVI 695527 . T G 955 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.10;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:988,114,0 chrXVI 695543 . G C 795 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=16.22;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:828,93,0 chrXVI 695653 . C G 894 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=12.42;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:927,105,0 chrXVI 695912 . T A 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.9135;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.601;QD=21.27;ReadPosRankSum=2.388;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:2,79:81:99:1756,195,0 chrXVI 696046 . T C 2147 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.52;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2180,249,0 chrXVI 696232 . A G 2097 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.8210;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.60;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2130,240,0 chrXVI 696313 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.7511;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=16.66;SB=-1.327e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1982,219,0 chrXVI 696490 . C T 2255 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.89;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2288,255,0 chrXVI 697060 . C T 1354 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=18.81;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1387,147,0 chrXVI 697067 . T C 1148 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=0.176;QD=16.64;ReadPosRankSum=1.230;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1181,135,0 chrXVI 697122 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.54;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1596,174,0 chrXVI 697144 . C G 1379 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.68;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1412,159,0 chrXVI 697315 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.2381;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.94;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1271,138,0 chrXVI 697444 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.94;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1591,174,0 chrXVI 697775 . C T 1335 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.86;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1368,150,0 chrXVI 697838 . T A 1682 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.021;QD=20.77;ReadPosRankSum=1.604;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1715,186,0 chrXVI 697864 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.91;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1765,204,0 chrXVI 697918 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.96;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1626,192,0 chrXVI 697945 . C T 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.148;QD=21.19;ReadPosRankSum=1.287;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1516,165,0 chrXVI 698558 . C G 47.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=3.69;SB=-8.196e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:80,9,0 chrXVI 698565 . A G 44.97 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=0;QD=3.46;SB=-8.095e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:9:77,9,0 chrXVI 698605 . T C 276.41 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-0.321;QD=10.24;ReadPosRankSum=-0.963;SB=-8.041e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:13:309,13,0 chrXVI 698632 . T C 688 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=16.78;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:84:721,84,0 chrXVI 698725 . A G 667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=5.898;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.347;QD=19.06;ReadPosRankSum=1.436;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:81:700,81,0 chrXVI 698851 . G C 1345 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.35;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1378,156,0 chrXVI 698946 . T C 1748 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.84;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1781,207,0 chrXVI 698959 . T C 1705 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.14;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1738,192,0 chrXVI 698973 . T C 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=2.876;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.358;QD=17.75;ReadPosRankSum=2.344;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:2,91:93:99:1684,192,0 chrXVI 699102 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.91;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1720,186,0 chrXVI 699146 . T G 1223 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=16.09;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1256,141,0 chrXVI 699154 . A C 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.378;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=0.468;QD=16.95;ReadPosRankSum=1.685;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1304,147,0 chrXVI 699198 . T C 1238 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.87;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1271,144,0 chrXVI 699223 . T C 1144 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.89;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1177,132,0 chrXVI 700042 . A G 1866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6176;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.231;QD=16.51;ReadPosRankSum=2.406;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:2,110:113:99:1899,216,0 chrXVI 700063 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.02;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1475,174,0 chrXVI 700101 . A G 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=68;Dels=0.00;FS=5.809;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.149;QD=17.15;ReadPosRankSum=2.718;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:3,65:68:99:1199,138,0 chrXVI 700309 . T G 607 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=13.49;SB=-3.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:72:640,72,0 chrXVI 700311 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=14.27;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:72:661,72,0 chrXVI 700480 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=23.91;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1635,177,0 chrXVI 700509 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=22.06;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1445,171,0 chrXVI 702124 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=24.04;SB=-2.700e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1788,204,0 chrXVI 702366 . A G 1660 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.75;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1693,189,0 chrXVI 702403 . C T 1588 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=17.84;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1621,174,0 chrXVI 702425 . C T 1493 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.97;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1526,174,0 chrXVI 702543 . G A 1249 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.84;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1282,138,0 chrXVI 702662 . G C 1380 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1413,162,0 chrXVI 702863 . G A 985 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=17.91;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1018,111,0 chrXVI 703206 . T A 1530 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.68;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1563,171,0 chrXVI 703359 . T C 1146 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.11;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1179,132,0 chrXVI 703434 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.16;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1578,180,0 chrXVI 704140 . C T 2100 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.43;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2133,228,0 chrXVI 704149 . T C 1919 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.78;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1952,225,0 chrXVI 704396 . G C 3099 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.52;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,141:144:99:3132,351,0 chrXVI 705153 . G C 2627 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=11.2411;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.36;SB=-1.457e+03 GT:AD:DP:GQ:PL 1/1:0,122:123:99:2660,303,0 chrXVI 705306 . T C 1677 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.473;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.421;QD=18.84;ReadPosRankSum=1.693;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1710,195,0 chrXVI 705570 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.33;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1575,177,0 chrXVI 705875 . A G 2639 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.15;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,113:114:99:2672,294,0 chrXVI 706170 . A G 3451.01 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.4682;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.17;SB=-1.796e+03 GT:AD:DP:GQ:PL 1/1:0,163:163:99:3451,387,0 chrXVI 706182 . A G 3158 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.37;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,155:155:99:3191,357,0 chrXVI 706320 . C T 2842 PASS AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.7555;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=17.76;SB=-2.057e+03 GT:AD:DP:GQ:PL 1/1:0,160:160:99:2875,312,0 chrXVI 706329 . C T 2371 PASS AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=16.58;SB=-1.504e+03 GT:AD:DP:GQ:PL 1/1:0,143:143:99:2404,270,0 chrXVI 706366 . T C 1477 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=13.19;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:1510,174,0 chrXVI 706374 . G T 1569 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=13.53;SB=-1.324e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:1602,174,0 chrXVI 706407 . G A 2000 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.8609;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.53;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2033,222,0 chrXVI 706545 . G A 2833 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.09;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,139:141:99:2866,315,0 chrXVI 707295 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.99;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1328,150,0 chrXVI 707364 . G A 1184 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=17.94;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1217,135,0 chrXVI 707392 . A C 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;MQRankSum=0.100;QD=12.41;ReadPosRankSum=0.043;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:2,84:86:99:1100,113,0 chrXVI 707402 . G C 1056 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=0;QD=12.14;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1089,129,0 chrXVI 707406 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=10.80;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:983,114,0 chrXVI 707414 . T G 1350 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4041;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=13.50;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1383,162,0 chrXVI 707478 . T C 1944 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.9950;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=18.87;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1977,222,0 chrXVI 707520 . C T 2085 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.49;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2118,231,0 chrXVI 707772 . C A 1636 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=16.69;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1669,186,0 chrXVI 707775 . C T 1512 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=15.75;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1545,174,0 chrXVI 707796 . T A 1868 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=16.39;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:1901,210,0 chrXVI 708078 . G A 2535 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.5301;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.67;SB=-1.456e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2568,285,0 chrXVI 708138 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.03;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2073,231,0 chrXVI 708162 . G T 1862 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=19.40;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1895,207,0 chrXVI 708208 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0725;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.87;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1606,177,0 chrXVI 708362 . C T 2434 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.35;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2467,258,0 chrXVI 708478 . A C 1818 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=22.17;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1851,213,0 chrXVI 708483 . A T 1941 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=23.96;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1974,213,0 chrXVI 708490 . A C 1891 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.55;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1924,222,0 chrXVI 708641 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.14;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1354,150,0 chrXVI 708647 . A G 1385 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.72;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1418,162,0 chrXVI 708653 . A G 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=3.680;HaplotypeScore=3.4972;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-0.784;QD=15.13;ReadPosRankSum=1.608;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1319,156,0 chrXVI 708674 . G C 1326 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.37;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1359,153,0 chrXVI 709506 . A C 2876 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.97;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2909,327,0 chrXVI 709892 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=15.84;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1807,213,0 chrXVI 709966 . C T 1590 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.07;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1623,174,0 chrXVI 710033 . A G 2251 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=106;Dels=0.00;FS=9.379;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.176;QD=21.24;ReadPosRankSum=2.379;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,103:106:99:2284,258,0 chrXVI 710154 . G A 1448 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1481,165,0 chrXVI 710484 . T C 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=12.4763;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.000;QD=18.95;ReadPosRankSum=1.630;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:1,101:103:99:1985,228,0 chrXVI 710553 . G A 1703 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.29;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1736,189,0 chrXVI 710793 . T C 1913 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.24;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1946,219,0 chrXVI 711113 . A G 1293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=1.251;QD=17.96;ReadPosRankSum=1.684;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1326,150,0 chrXVI 711619 . C G 1502 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.98;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1535,174,0 chrXVI 711631 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.7121;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.35;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1611,177,0 chrXVI 713880 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.70;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1710,192,0 chrXVI 714279 . A T 1159 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=59;Dels=0.00;FS=10.003;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.445;QD=19.64;ReadPosRankSum=2.157;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1192,132,0 chrXVI 714300 . A T 1186 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.83;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1219,132,0 chrXVI 714342 . G A 1407 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.51;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1440,159,0 chrXVI 714603 . T C 1150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.559;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.675;QD=18.85;ReadPosRankSum=1.675;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1183,135,0 chrXVI 714698 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.34;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1638,177,0 chrXVI 714703 . G C 1448 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=2.9320;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.04;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1481,168,0 chrXVI 714728 . A G 997 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.396;QD=14.24;ReadPosRankSum=1.683;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1030,120,0 chrXVI 714942 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0233;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.56;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1534,165,0 chrXVI 715017 . T A 2088 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.95;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2121,231,0 chrXVI 715923 . G A 878 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.26;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:911,99,0 chrXVI 716336 . T C 1021 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.290;QD=21.27;ReadPosRankSum=1.659;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,46:48:99:1054,117,0 chrXVI 716378 . T G 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.028;QD=21.89;ReadPosRankSum=1.562;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1368,156,0 chrXVI 716627 . A G 1618 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1651,189,0 chrXVI 716666 . T C 1637 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0796;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.685;QD=22.12;ReadPosRankSum=1.685;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1670,192,0 chrXVI 716753 . C T 1765 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.40;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1798,204,0 chrXVI 716879 . A G 1584 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.476;QD=19.80;ReadPosRankSum=1.646;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1617,183,0 chrXVI 716942 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.02;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1363,150,0 chrXVI 717019 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.03;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1568,168,0 chrXVI 717101 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.84;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1111,123,0 chrXVI 717249 . C T 1110 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5304;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.94;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1143,126,0 chrXVI 717476 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.15;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1584,180,0 chrXVI 718224 . T C 2074 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0950;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2107,237,0 chrXVI 718261 . G C 1875 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.15;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1908,213,0 chrXVI 718423 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.24;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1647,192,0 chrXVI 718569 . T A 1590 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0988;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.65;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1623,177,0 chrXVI 718602 . C T 1700 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.25;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1733,195,0 chrXVI 719281 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.47;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1054,117,0 chrXVI 719293 . C T 1212 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.54;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1245,135,0 chrXVI 719431 . C T 148.06 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=2.21;SB=-8.061e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:21:181,21,0 chrXVI 719432 . T A 163.06 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=2.51;SB=-8.321e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:21:196,21,0 chrXVI 719631 . T G 3220.05 PASS AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=2.7579;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.05;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,169:169:99:3253,357,0 chrXVI 719633 . A G 2844 PASS AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.6432;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.45;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,163:163:99:2877,330,0 chrXVI 719789 . T G 2450 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.0053;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.68;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2483,276,0 chrXVI 719898 . C T 2860 PASS AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=12.4379;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.45;SB=-1.315e+03 GT:AD:DP:GQ:PL 1/1:0,152:154:99:2893,315,0 chrXVI 719918 . T C 2670 PASS AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=12.1322;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=15.34;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,170:174:99:2703,312,0 chrXVI 720047 . G A 2783 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.4911;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.93;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2816,315,0 chrXVI 720134 . G A 2170 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.87;SB=-1.322e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2203,237,0 chrXVI 720275 . T C 1996 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.01;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2029,234,0 chrXVI 720323 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.60;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1391,150,0 chrXVI 720335 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.70;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1254,138,0 chrXVI 720353 . C G 1102 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=16.45;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1135,126,0 chrXVI 720561 . C A 2435 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.74;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2468,267,0 chrXVI 720720 . C T 911 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.52;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:944,105,0 chrXVI 720834 . A T 592 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.532;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.028;QD=16.00;ReadPosRankSum=2.810;SB=-1.370e+02 GT:AD:DP:GQ:PL 1/1:3,34:37:69:625,69,0 chrXVI 721050 . T C 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.459;QD=23.47;ReadPosRankSum=1.687;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1817,210,0 chrXVI 721093 . T C 994 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.530;QD=20.29;ReadPosRankSum=1.379;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1027,117,0 chrXVI 721892 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1769;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,87:89:99:1820,198,0 chrXVI 722078 . C G 1855 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.95;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1888,213,0 chrXVI 722117 . T C 1589 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.327;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.687;QD=20.64;ReadPosRankSum=1.372;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1622,180,0 chrXVI 722172 . G C 1520 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1553,174,0 chrXVI 722849 . C G 1863 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.82;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,92:94:99:1896,213,0 chrXVI 723074 . C T 1474 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=6.9347;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.20;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1507,162,0 chrXVI 723284 . C T 1597 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.22;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1630,177,0 chrXVI 723296 . T C 1580 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.52;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1613,180,0 chrXVI 723602 . A G 1546 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=80;Dels=0.00;FS=3.413;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.206;QD=19.32;ReadPosRankSum=1.601;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,78:80:99:1579,186,0 chrXVI 723709 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.21;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1666,180,0 chrXVI 723738 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.382;QD=21.42;ReadPosRankSum=1.687;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1682,192,0 chrXVI 724121 . A G 1718 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.22;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:74:99:1751,192,0 chrXVI 724232 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.77;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2145,237,0 chrXVI 724286 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.02;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1927,210,0 chrXVI 724967 . G T 2290 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.13;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,97:99:99:2323,252,0 chrXVI 725136 . G A 1478 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.95;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1511,162,0 chrXVI 725138 . C T 1481 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.99;SB=-9.290e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1514,162,0 chrXVI 725262 . G A 1695 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5650;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.73;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1728,186,0 chrXVI 725275 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.75;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1589,180,0 chrXVI 725291 . T A 1744 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.98;SB=-1.166e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1777,195,0 chrXVI 725308 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.00;SB=-1.250e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1959,216,0 chrXVI 725435 . A G 1680 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.49;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1713,192,0 chrXVI 725441 . C T 1667 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.58;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1700,183,0 chrXVI 725567 . C A 1404 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.92;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1437,156,0 chrXVI 725570 . T A 1439 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.54;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1472,159,0 chrXVI 725777 . A G 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=2.814;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=0.283;QD=20.84;ReadPosRankSum=2.350;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:2,72:75:99:1596,180,0 chrXVI 726358 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.81;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2343,249,0 chrXVI 726386 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.35;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:74:99:1613,174,0 chrXVI 726480 . A G 1001 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.54;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1034,117,0 chrXVI 726485 . T C 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.984;QD=17.80;ReadPosRankSum=2.367;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1083,123,0 chrXVI 726638 . C T 1925 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.05;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1958,219,0 chrXVI 727099 . T G 1808 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.808;QD=23.79;ReadPosRankSum=1.686;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:1,74:76:99:1841,207,0 chrXVI 727505 . T C 2025 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=97;Dels=0.00;FS=6.157;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.114;QD=20.88;ReadPosRankSum=2.399;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:2,95:97:99:2058,237,0 chrXVI 727667 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6698;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.47;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1987,216,0 chrXVI 727853 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.9207;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.39;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2496,279,0 chrXVI 728111 . T C 2177 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.14;SB=-1.319e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2210,246,0 chrXVI 728174 . C T 1895 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.71;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:1928,213,0 chrXVI 728255 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.60;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1804,207,0 chrXVI 728329 . A G 876 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;MQRankSum=-0.127;QD=21.37;ReadPosRankSum=0.296;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:909,102,0 chrXVI 728333 . A G 789 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.23;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:822,93,0 chrXVI 728630 . C G 485 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=61.6787;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=16.72;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:60:518,60,0 chrXVI 728712 . G A 392 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.60;SB=-8.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:425,45,0 chrXVI 729067 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1002,114,0 chrXVI 729159 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.97;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1855,207,0 chrXVI 729469 . A T 1930 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.69;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1963,216,0 chrXVI 729540 . A G 1329 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.391;QD=18.72;ReadPosRankSum=1.683;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1362,156,0 chrXVI 729600 . A G 1232 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.88;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1265,144,0 chrXVI 729729 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.73;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:2006,222,0 chrXVI 730213 . G A 2160 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2193,237,0 chrXVI 730292 . T C 1913 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.62;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1946,219,0 chrXVI 730534 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.53;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1423,156,0 chrXVI 730935 . T G 1950 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.37;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,78:80:99:1983,219,0 chrXVI 731036 . T C 821 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=19.09;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:854,96,0 chrXVI 731037 . A C 833 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.93;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:866,96,0 chrXVI 731135 . T A 2805 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=125;Dels=0.00;FS=6.621;HaplotypeScore=6.9654;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.313;QD=22.44;ReadPosRankSum=0.419;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:1,124:125:99:2838,282,0 chrXVI 731859 . T C 2133 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.128;QD=22.45;ReadPosRankSum=1.696;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:1,94:95:99:2166,249,0 chrXVI 732154 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.12;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1723,186,0 chrXVI 732897 . G A 2525 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2558,279,0 chrXVI 733113 . T C 414 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=13.80;SB=-5.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:54:447,54,0 chrXVI 733425 . G A 1050 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.61;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1083,117,0 chrXVI 733512 . A G 404 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.25;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:48:437,48,0 chrXVI 733636 . T C 1378 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.237;QD=24.61;ReadPosRankSum=1.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1411,153,0 chrXVI 733950 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.46;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1218,135,0 chrXVI 734031 . T C 1375 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=15.28;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1408,159,0 chrXVI 734051 . A T 1022 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=10.32;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1055,117,0 chrXVI 734063 . G A 1114 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2921;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=11.25;SB=-1.126e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1147,123,0 chrXVI 734148 . T A 2363 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=4.284;HaplotypeScore=8.3259;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.675;QD=20.03;ReadPosRankSum=1.703;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2396,261,0 chrXVI 734520 . C G 1829 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.88;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1862,210,0 chrXVI 734868 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.81;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1598,171,0 chrXVI 735090 . T C 1202 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.03;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1235,147,0 chrXVI 735447 . G T 1663 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.78;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1696,183,0 chrXVI 735801 . T C 2159 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.56;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2192,246,0 chrXVI 735864 . G T 1838 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.15;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1871,201,0 chrXVI 735865 . G T 1819 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.95;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1852,201,0 chrXVI 735901 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=16.60;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1544,168,0 chrXVI 736014 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.50;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2165,243,0 chrXVI 736356 . A T 1439 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.200;QD=18.93;ReadPosRankSum=2.318;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:2,74:76:99:1472,159,0 chrXVI 736410 . T C 1296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=17.372;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.185;QD=16.62;ReadPosRankSum=2.387;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:2,76:78:99:1329,150,0 chrXVI 736455 . A G 1421 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.516;DP=85;Dels=0.00;FS=4.956;HaplotypeScore=8.1101;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.832;QD=16.72;ReadPosRankSum=3.668;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:5,80:85:99:1454,165,0 chrXVI 736469 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.22;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1582,177,0 chrXVI 736702 . A G 1201 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.10;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1234,138,0 chrXVI 736718 . C G 1013 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.02;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1046,120,0 chrXVI 736854 . G C 1763 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.50;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1796,201,0 chrXVI 736980 . A T 2155 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=4.305;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.911;QD=22.22;ReadPosRankSum=1.696;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2188,234,0 chrXVI 737218 . C T 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.211;QD=18.49;ReadPosRankSum=0.211;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1549,147,0 chrXVI 737659 . G A 1955 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5977;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1988,213,0 chrXVI 737724 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.09;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1910,210,0 chrXVI 737976 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.30;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1505,162,0 chrXVI 738214 . T C 1823 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.502;QD=23.08;ReadPosRankSum=2.387;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:2,76:79:99:1856,210,0 chrXVI 738241 . A G 1533 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.22;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1566,177,0 chrXVI 738527 . T C 2321 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=127;Dels=0.00;FS=12.215;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.875;QD=18.28;ReadPosRankSum=3.774;SB=-1.513e+03 GT:AD:DP:GQ:PL 1/1:5,121:127:99:2354,264,0 chrXVI 738601 . C T 2715 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.3404;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.82;SB=-1.238e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2748,300,0 chrXVI 738727 . A G 1486 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.7168;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.031;QD=18.35;ReadPosRankSum=1.644;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,78:81:99:1519,171,0 chrXVI 738757 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.78;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1446,159,0 chrXVI 738975 . T C 1842 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0323;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.70;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1875,210,0 chrXVI 739339 . C T 1724 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.59;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1757,198,0 chrXVI 739625 . C G 1308 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=17.44;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1341,150,0 chrXVI 739738 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.40;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2034,219,0 chrXVI 739829 . C T 2591 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.93;SB=-1.603e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2624,285,0 chrXVI 739882 . A G 2332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=120;Dels=0.00;FS=2.926;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.789;QD=19.43;ReadPosRankSum=2.388;SB=-1.336e+03 GT:AD:DP:GQ:PL 1/1:2,118:120:99:2365,267,0 chrXVI 740090 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.78;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:1633,186,0 chrXVI 740140 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.6732;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.60;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1758,189,0 chrXVI 740246 . A C 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=0.278;QD=18.70;ReadPosRankSum=1.689;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1548,177,0 chrXVI 740267 . C T 1435 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.88;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1468,162,0 chrXVI 740348 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=13.55;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1171,129,0 chrXVI 740362 . G A 1311 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=15.24;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1344,150,0 chrXVI 740531 . A G 2112 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.514;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.759;QD=23.73;ReadPosRankSum=1.693;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,88:89:99:2145,252,0 chrXVI 740798 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.41;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1911,219,0 chrXVI 740879 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.317;QD=20.16;ReadPosRankSum=1.695;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,92:96:99:1968,222,0 chrXVI 741098 . G A 1274 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.01;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1307,144,0 chrXVI 741341 . T C 1912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.383;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.344;QD=17.87;ReadPosRankSum=1.700;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:1,106:107:99:1945,222,0 chrXVI 741347 . T G 1879 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=108;Dels=0.00;FS=4.084;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.742;QD=17.40;ReadPosRankSum=1.699;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:1,105:108:99:1912,219,0 chrXVI 741467 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.39;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1449,165,0 chrXVI 742036 . T G 1307 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7366;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.90;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:1340,153,0 chrXVI 742069 . T A 1230 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.1856;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.52;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1263,138,0 chrXVI 742152 . A C 1405 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.487;QD=21.95;ReadPosRankSum=1.678;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1438,165,0 chrXVI 742176 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.75;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1340,153,0 chrXVI 742340 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,69:71:99:1642,183,0 chrXVI 742539 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.34;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1500,168,0 chrXVI 743326 . G T 1386 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.48;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1419,156,0 chrXVI 743518 . C T 2404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.804;QD=24.78;ReadPosRankSum=-0.125;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:2437,267,0 chrXVI 743659 . G A 1634 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.17;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1667,186,0 chrXVI 743731 . A T 1890 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.69;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1923,213,0 chrXVI 743816 . G A 2211 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.6122;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.57;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2244,243,0 chrXVI 743956 . G T 1313 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4301;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.89;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1346,147,0 chrXVI 743973 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.49;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1339,147,0 chrXVI 744067 . G A 1214 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=20.23;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1247,138,0 chrXVI 744098 . A G 1307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=4.921;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.440;QD=21.78;ReadPosRankSum=1.674;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1340,153,0 chrXVI 744256 . T A 1237 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.62;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1270,138,0 chrXVI 744403 . A C 1185 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.43;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1218,141,0 chrXVI 744410 . A C 1132 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=16.65;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1165,132,0 chrXVI 744451 . A T 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;MQRankSum=0.021;QD=16.18;ReadPosRankSum=1.649;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1408,156,0 chrXVI 744459 . A G 1375 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=-0.124;QD=16.37;ReadPosRankSum=1.691;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1408,159,0 chrXVI 744462 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=18.37;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1521,162,0 chrXVI 744531 . A G 1169 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.404;QD=19.16;ReadPosRankSum=1.675;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,59:61:99:1202,141,0 chrXVI 744598 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2460;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1459,159,0 chrXVI 744781 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=23.65;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1594,180,0 chrXVI 744935 . C A 1563 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1596,174,0 chrXVI 745381 . T A 2483 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.17;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2516,276,0 chrXVI 745441 . A G 2881 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=132;Dels=0.00;FS=4.871;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.653;QD=21.83;ReadPosRankSum=1.601;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:1,131:132:99:2914,333,0 chrXVI 745578 . A G 1812 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1845,210,0 chrXVI 745623 . C T 1330 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1363,153,0 chrXVI 745701 . T C 2668 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.01;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2701,300,0 chrXVI 745879 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.14;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1264,135,0 chrXVI 746530 . G A 1510 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.68;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1543,168,0 chrXVI 746797 . C T 1173 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.33;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1206,132,0 chrXVI 746951 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5119;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.17;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1232,138,0 chrXVI 747024 . A T 1891 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.01;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1924,213,0 chrXVI 747100 . A G 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.654;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.973;QD=20.66;ReadPosRankSum=1.685;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1541,177,0 chrXVI 747103 . C A 1636 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.72;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1669,180,0 chrXVI 747369 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=18.80;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1424,162,0 chrXVI 747485 . A G 1343 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.46;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1376,159,0 chrXVI 747842 . T C 1168 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.80;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1201,138,0 chrXVI 747971 . C G 2703 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.91;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,116:118:99:2736,321,0 chrXVI 748200 . T C 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.685;QD=23.05;ReadPosRankSum=1.685;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:1716,192,0 chrXVI 748244 . A G 2162 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.694;QD=24.02;ReadPosRankSum=1.694;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:1,89:90:99:2195,246,0 chrXVI 748400 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.4202;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.77;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1812,198,0 chrXVI 748581 . T C 1524 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.88;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1557,174,0 chrXVI 748650 . C T 2078 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.84;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2111,228,0 chrXVI 749484 . A T 1397 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1430,159,0 chrXVI 749559 . A G 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.066;QD=21.75;ReadPosRankSum=1.688;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1751,198,0 chrXVI 749668 . C T 2427 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.48;SB=-1.248e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2460,264,0 chrXVI 749787 . A G 1260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-0.202;QD=16.36;ReadPosRankSum=1.687;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1293,150,0 chrXVI 750029 . C T 1035 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.37;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1068,117,0 chrXVI 750033 . T C 978 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=15.05;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1011,117,0 chrXVI 750118 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.42;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1299,141,0 chrXVI 750456 . G A 1644 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.08;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1677,183,0 chrXVI 750588 . T C 1051 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=69;Dels=0.00;FS=12.532;HaplotypeScore=12.3312;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.250;QD=15.23;ReadPosRankSum=2.898;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,66:69:99:1084,123,0 chrXVI 750734 . A G 2067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=92;Dels=0.00;FS=9.071;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.452;QD=22.47;ReadPosRankSum=2.395;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:2,88:92:99:2100,231,0 chrXVI 750943 . C G 1733 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.13;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1766,195,0 chrXVI 751586 . G A 2166 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.4566;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.43;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,105:106:99:2199,237,0 chrXVI 751611 . G T 2186 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2433;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.53;SB=-1.558e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2219,243,0 chrXVI 752166 . C A 1092 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.75;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1125,120,0 chrXVI 752508 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1446,165,0 chrXVI 752721 . G C 2271 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.22;SB=-1.311e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2304,258,0 chrXVI 752937 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.02;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1631,183,0 chrXVI 753088 . T C 1294 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.011;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.408;QD=19.03;ReadPosRankSum=1.681;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1327,150,0 chrXVI 753099 . G A 1349 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.84;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1382,153,0 chrXVI 753173 . G A 1319 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.61;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1352,144,0 chrXVI 753336 . A G 1058 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.16;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1091,123,0 chrXVI 753339 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.06;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1076,123,0 chrXVI 753414 . A T 671 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=14.91;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:704,78,0 chrXVI 753479 . A C 1740 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.89;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1773,198,0 chrXVI 753640 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.66;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1311,144,0 chrXVI 754107 . C A 1434 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.38;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1467,165,0 chrXVI 754681 . G A 1725 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.256;QD=21.30;ReadPosRankSum=1.126;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1758,189,0 chrXVI 754744 . T A 1581 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.28;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1614,177,0 chrXVI 755191 . A G 1028 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.6583;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.13;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1061,123,0 chrXVI 755194 . C T 1140 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6583;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.173;QD=18.39;ReadPosRankSum=1.621;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1173,126,0 chrXVI 755201 . A G 1319 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.890;QD=17.82;ReadPosRankSum=1.685;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1352,156,0 chrXVI 755242 . T G 1262 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.58;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1295,147,0 chrXVI 755692 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3048;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=14.66;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1059,120,0 chrXVI 755818 . C T 1735 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.24;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1768,198,0 chrXVI 755941 . A T 1286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=4.150;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=-1.412;QD=19.48;ReadPosRankSum=1.626;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1319,144,0 chrXVI 755950 . G C 1214 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.39;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1247,144,0 chrXVI 756115 . T A 1068 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.74;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1101,120,0 chrXVI 756136 . G A 1211 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.25;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1244,135,0 chrXVI 756226 . G T 1147 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.90;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1180,129,0 chrXVI 756511 . T C 1639 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.75;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1672,192,0 chrXVI 756638 . T C 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=5.2074;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.704;QD=15.81;ReadPosRankSum=1.678;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1045,120,0 chrXVI 756700 . T C 1308 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.96;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1341,153,0 chrXVI 756704 . T G 1255 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.46;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1288,150,0 chrXVI 756770 . G A 989 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.66;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1022,111,0 chrXVI 756785 . A C 1010 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.03;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1043,114,0 chrXVI 756838 . C T 971 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=12.95;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1004,108,0 chrXVI 756856 . G A 1108 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=15.39;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1141,123,0 chrXVI 756886 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=17.5311;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.78;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1331,144,0 chrXVI 756925 . G T 1288 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.94;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1321,147,0 chrXVI 757111 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.98;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1837,210,0 chrXVI 757135 . G T 1617 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.85;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:74:99:1650,177,0 chrXVI 757526 . G T 1735 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.3684;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.70;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1768,198,0 chrXVI 757653 . T C 2030 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.12;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2063,234,0 chrXVI 757669 . A G 2022 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=6.295;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.163;QD=17.89;ReadPosRankSum=2.363;SB=-1.362e+03 GT:AD:DP:GQ:PL 1/1:2,111:113:99:2055,234,0 chrXVI 758098 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.03;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,100:101:99:1955,222,0 chrXVI 758116 . G A 2043 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.64;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2076,228,0 chrXVI 758257 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.57;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2518,276,0 chrXVI 758284 . G A 2925 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.1548;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.74;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2958,324,0 chrXVI 758351 . C T 2493 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8228;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.66;SB=-1.321e+03 GT:AD:DP:GQ:PL 1/1:0,108:110:99:2526,276,0 chrXVI 758393 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2232;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.36;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1955,222,0 chrXVI 758422 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=18.58;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1482,174,0 chrXVI 758431 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.49;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1275,147,0 chrXVI 758599 . C T 930 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.60;SB=-1.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:963,105,0 chrXVI 758616 . T C 895 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.04;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:928,108,0 chrXVI 758824 . G T 598 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=15.74;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:631,69,0 chrXVI 758831 . T C 526 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=14.22;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:63:559,63,0 chrXVI 758917 . G C 655 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.47;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:688,78,0 chrXVI 758968 . T C 655 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.13;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:688,78,0 chrXVI 759019 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9206;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.96;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1066,117,0 chrXVI 759355 . C G 1863 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1896,213,0 chrXVI 759400 . T G 2088 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2121,237,0 chrXVI 759469 . T G 1640 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1211;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1673,189,0 chrXVI 759544 . A T 1319 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.98;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1352,147,0 chrXVI 759776 . C A 1881 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.62;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1914,207,0 chrXVI 759895 . C G 1409 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1442,168,0 chrXVI 759936 . G A 1421 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.6709;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.86;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1454,159,0 chrXVI 760007 . C T 1589 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.19;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1622,183,0 chrXVI 760748 . T A 1270 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.54;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1303,144,0 chrXVI 760882 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.96;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:1982,222,0 chrXVI 761136 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.12;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1432,156,0 chrXVI 761833 . A T 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.060;QD=19.56;ReadPosRankSum=1.553;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1187,126,0 chrXVI 761908 . T C 1585 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.01;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1618,183,0 chrXVI 762178 . T C 1255 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.221;QD=20.24;ReadPosRankSum=1.562;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1288,147,0 chrXVI 762781 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.38;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1553,180,0 chrXVI 763440 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5562;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.50;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1554,180,0 chrXVI 764287 . A G 2476 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.293;HaplotypeScore=7.4610;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.858;QD=22.31;ReadPosRankSum=1.670;SB=-1.374e+03 GT:AD:DP:GQ:PL 1/1:1,110:111:99:2509,285,0 chrXVI 764615 . A T 1770 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.95;SB=-1.230e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:1803,195,0 chrXVI 764918 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=92;Dels=0.00;FS=9.208;HaplotypeScore=11.3789;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.661;QD=20.05;ReadPosRankSum=3.360;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:4,88:92:99:1878,216,0 chrXVI 764989 . C T 1577 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.48;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1610,180,0 chrXVI 765757 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.67;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1521,171,0 chrXVI 766111 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.57;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1426,162,0 chrXVI 766198 . G A 1110 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1143,123,0 chrXVI 766291 . T C 1456 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.83;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1489,171,0 chrXVI 766294 . G T 1480 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.09;SB=-1.214e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1513,162,0 chrXVI 766340 . C A 1384 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=16.67;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1417,156,0 chrXVI 766471 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.08;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1226,138,0 chrXVI 766645 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.37;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1739,201,0 chrXVI 766882 . T C 1276 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1309,150,0 chrXVI 767014 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1561,174,0 chrXVI 767513 . C T 1442 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=21.85;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1475,159,0 chrXVI 767821 . T C 1465 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.78;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1498,174,0 chrXVI 768045 . G A 2373 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.82;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2406,258,0 chrXVI 768915 . C T 1021 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=15.71;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1054,114,0 chrXVI 769166 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=23.60;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1874,210,0 chrXVI 769669 . T A 184.03 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=6.57;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:24:217,24,0 chrXVI 769677 . A G 538 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=13.12;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:63:571,63,0 chrXVI 769881 . C T 1721 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.25;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1754,192,0 chrXVI 770049 . A T 3861.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=186;Dels=0.00;FS=3.641;HaplotypeScore=7.9457;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.253;QD=20.76;ReadPosRankSum=1.657;SB=-2.180e+03 GT:AD:DP:GQ:PL 1/1:1,185:186:99:3861,420,0 chrXVI 770077 . T C 3526.01 PASS AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.46;SB=-1.969e+03 GT:AD:DP:GQ:PL 1/1:0,190:191:99:3526,402,0 chrXVI 770091 . T C 3496.01 PASS AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.2191;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.10;SB=-1.770e+03 GT:AD:DP:GQ:PL 1/1:0,183:183:99:3496,393,0 chrXVI 770162 . A T 1539 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.73;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1572,171,0 chrXVI 770602 . T C 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=69;Dels=0.00;FS=3.072;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.325;QD=20.84;ReadPosRankSum=2.305;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:2,66:69:99:1471,165,0 chrXVI 770667 . C G 1500 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=73.4546;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.07;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1533,177,0 chrXVI 770699 . T A 1412 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=16.23;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1445,159,0 chrXVI 772068 . T A 2312 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2345,252,0 chrXVI 772366 . C T 3070 PASS AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.32;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,142:144:99:3103,336,0 chrXVI 772693 . C T 1681 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9907;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.75;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1714,192,0 chrXVI 772936 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.04;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1047,114,0 chrXVI 773341 . C T 495 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.52;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:57:528,57,0 chrXVI 774130 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.14;SB=-1.216e+03 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2128,240,0 chrXVI 774271 . C T 1736 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.84;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1769,189,0 chrXVI 774732 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.38;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1658,183,0 chrXVI 775108 . C A 1220 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.43;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1253,135,0 chrXVI 775111 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=17.84;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1264,135,0 chrXVI 775174 . C A 962 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=15.27;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:995,111,0 chrXVI 775183 . T C 1188 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.00;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1221,138,0 chrXVI 775730 . G T 708 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=14.75;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:84:741,84,0 chrXVI 775734 . A G 706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.678;QD=15.35;ReadPosRankSum=1.657;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:84:739,84,0 chrXVI 775853 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.95;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1270,144,0 chrXVI 775873 . T G 1339 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=73;Dels=0.00;FS=2.464;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=-0.351;QD=18.34;ReadPosRankSum=3.333;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:4,69:73:99:1372,156,0 chrXVI 776099 . A G 2246 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.92;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2279,252,0 chrXVI 776133 . C T 2277 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.77;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2310,249,0 chrXVI 776228 . T G 2543 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=4.037;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.061;QD=22.31;ReadPosRankSum=1.702;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:1,113:114:99:2576,285,0 chrXVI 776262 . G A 2978 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.45;SB=-1.560e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:3011,327,0 chrXVI 776325 . G T 3711.01 PASS AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.83;SB=-1.879e+03 GT:AD:DP:GQ:PL 1/1:0,170:170:99:3711,411,0 chrXVI 776361 . G C 3965.01 PASS AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.4266;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.03;SB=-1.940e+03 GT:AD:DP:GQ:PL 1/1:0,168:180:99:3965,447,0 chrXVI 776502 . A G 2351 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.99;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,111:112:99:2384,270,0 chrXVI 776686 . A G 2255 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.6244;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.96;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2288,258,0 chrXVI 776883 . T C 362 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=16.45;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:395,45,0 chrXVI 776885 . T C 347 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=15.77;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:45:380,45,0 chrXVI 776897 . C G 367 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=18.35;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:400,45,0 chrXVI 776901 . T C 308 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=16.21;SB=-2.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:341,39,0 chrXVI 776932 . G A 297 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=38.6603;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=16.50;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:36:330,36,0 chrXVI 776990 . G C 919 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=17.67;SB=-8.601e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:99:952,108,0 chrXVI 777033 . T C 1701 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=80.2202;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=19.11;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1734,198,0 chrXVI 777082 . T A 1077 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1110,120,0 chrXVI 777117 . C G 456 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.83;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,22:23:57:489,57,0 chrXVI 777167 . A G 1167 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.02;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:0,50:53:99:1200,144,0 chrXVI 777250 . C T 993 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.46;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1026,114,0 chrXVI 777332 . C T 860 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.57;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:96:893,96,0 chrXVI 777389 . G A 1248 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.47;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1281,138,0 chrXVI 777410 . C T 1302 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.67;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1335,144,0 chrXVI 777662 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.41;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1081,117,0 chrXVI 777676 . C T 1054 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.49;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1087,117,0 chrXVI 778075 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.00;SB=-1.165e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1991,216,0 chrXVI 778447 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2150,237,0 chrXVI 778611 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.3474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2228,246,0 chrXVI 779145 . T A 2756 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2789,300,0 chrXVI 779194 . A G 2452 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.51;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:1,112:114:99:2485,282,0 chrXVI 779267 . G A 2084 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2117,231,0 chrXVI 779303 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.07;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1925,216,0 chrXVI 779914 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.85;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1305,147,0 chrXVI 780119 . A C 1431 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.15;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1464,168,0 chrXVI 780140 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.75;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1423,156,0 chrXVI 780244 . T C 999 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.50;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1032,120,0 chrXVI 780448 . T C 1145 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=12.8552;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.466;QD=21.60;ReadPosRankSum=1.599;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1178,135,0 chrXVI 780767 . T A 1642 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.09;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1675,195,0 chrXVI 781039 . A T 2331 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=7.420;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.565;QD=23.55;ReadPosRankSum=2.400;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2364,258,0 chrXVI 781070 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.10;SB=-1.136e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1842,198,0 chrXVI 781071 . T C 1754 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.49;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1787,198,0 chrXVI 781405 . A C 1487 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.19;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1520,174,0 chrXVI 781643 . C A 1269 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.39;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1302,144,0 chrXVI 781649 . C A 1100 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.46;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1133,123,0 chrXVI 781661 . G A 1033 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.12;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1066,120,0 chrXVI 782830 . A T 1519 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.10;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1552,174,0 chrXVI 783424 . C A 1323 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1356,147,0 chrXVI 783722 . A G 1624 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.87;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1657,186,0 chrXVI 784177 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.99;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1590,171,0 chrXVI 784693 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.4441;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.58;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1849,210,0 chrXVI 784888 . T C 1354 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.83;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1387,156,0 chrXVI 785197 . A G 1528 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=2.886;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.253;QD=20.93;ReadPosRankSum=2.382;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1561,177,0 chrXVI 785578 . A G 1841 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.91;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1874,210,0 chrXVI 785712 . T G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.478;DP=72;Dels=0.00;FS=17.014;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.130;QD=17.26;ReadPosRankSum=3.544;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:5,67:72:99:1276,141,0 chrXVI 785737 . A G 1252 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6262;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.492;QD=16.47;ReadPosRankSum=1.684;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:1,72:76:99:1285,147,0 chrXVI 785910 . A G 1324 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.315;QD=20.06;ReadPosRankSum=-0.892;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1357,136,0 chrXVI 785968 . T C 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=8.957;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.223;QD=18.63;ReadPosRankSum=2.381;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:2,70:73:99:1393,156,0 chrXVI 786015 . A G 1325 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=67.7363;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-1.636;QD=18.40;ReadPosRankSum=1.684;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:1358,153,0 chrXVI 786231 . C T 3579.01 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;QD=23.55;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,151:152:99:3579,396,0 chrXVI 786234 . C T 3506.01 PASS AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=23.22;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,150:151:99:3506,384,0 chrXVI 786282 . T C 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;DP=108;Dels=0.00;FS=13.412;HaplotypeScore=4.1345;MLEAC=1;MLEAF=0.500;MQ=35.13;MQ0=0;MQRankSum=-0.997;QD=0.72;ReadPosRankSum=2.237;SB=-5.680e+02 GT:AD:DP:GQ:PL 0/1:51,56:108:99:108,0,557 chrXVI 786288 . G A 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.939;DP=106;Dels=0.00;FS=5.028;HaplotypeScore=6.5553;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=0;MQRankSum=1.726;QD=1.35;ReadPosRankSum=2.209;SB=-6.370e+02 GT:AD:DP:GQ:PL 0/1:42,64:106:99:173,0,347 chrXVI 786303 . T C 100.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.799;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=1;MLEAF=0.500;MQ=37.78;MQ0=0;MQRankSum=-3.395;QD=0.89;ReadPosRankSum=0.046;SB=-1.960e+02 GT:AD:DP:GQ:PL 0/1:81,31:112:99:130,0,560 chrXVI 786306 . G A 104.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.3716;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=0;MQRankSum=-3.436;QD=0.87;ReadPosRankSum=0.379;SB=-2.020e+02 GT:AD:DP:GQ:PL 0/1:85,30:119:99:134,0,605 chrXVI 786444 . T C 570.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=246;Dels=0.02;FS=19.374;HaplotypeScore=75.6034;MLEAC=1;MLEAF=0.500;MQ=41.14;MQ0=0;MQRankSum=-4.897;QD=2.32;ReadPosRankSum=-6.556;SB=-5.760e+02 GT:AD:DP:GQ:PL 0/1:167,73:242:99:600,0,917 chrXVI 786450 . T G 513.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;DP=248;Dels=0.02;FS=0.492;HaplotypeScore=75.4625;MLEAC=1;MLEAF=0.500;MQ=41.22;MQ0=0;MQRankSum=-6.389;QD=2.07;ReadPosRankSum=-11.705;SB=-7.730e+02 GT:AD:DP:GQ:PL 0/1:131,113:244:99:543,0,1053 chrXVI 787032 . T C 2231 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.48;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2264,252,0 chrXVI 787095 . A G 1784 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=9.434;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.016;QD=22.58;ReadPosRankSum=2.325;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1817,201,0 chrXVI 787134 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.60;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1310,141,0 chrXVI 787191 . C A 1442 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.90;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1475,162,0 chrXVI 787292 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.91;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1811,195,0 chrXVI 787485 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.14;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1513,168,0 chrXVI 787542 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=16.52;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1437,156,0 chrXVI 787549 . C A 1142 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=14.83;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1175,129,0 chrXVI 787570 . T A 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=64.7142;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=0.21;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:6:48,6,0 chrXVI 787696 . A G 760 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:793,90,0 chrXVI 787937 . T C 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;MQRankSum=-0.171;QD=20.65;ReadPosRankSum=1.537;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:1499,168,0 chrXVI 787957 . C T 1071 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.47;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1104,123,0 chrXVI 788197 . A G 990 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.5035;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.06;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1023,120,0 chrXVI 788230 . T C 944 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:977,111,0 chrXVI 788278 . T C 1478 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.203;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.577;QD=21.42;ReadPosRankSum=1.682;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1511,171,0 chrXVI 788320 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.78;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1358,147,0 chrXVI 788362 . C T 1734 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.6431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1767,195,0 chrXVI 788440 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.36;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,102:105:99:2171,234,0 chrXVI 788617 . C A 2159 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1729;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.49;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2192,249,0 chrXVI 788833 . G A 2766 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.49;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2799,303,0 chrXVI 789056 . T C 2456 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.17;SB=-1.361e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2489,282,0 chrXVI 789091 . T G 2481 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.7951;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.38;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,128:128:99:2514,294,0 chrXVI 789289 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=14.85;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:924,102,0 chrXVI 789402 . T C 1135 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=8.451;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.247;QD=13.35;ReadPosRankSum=1.691;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1168,135,0 chrXVI 789549 . G A 1038 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.58;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1071,114,0 chrXVI 789596 . A G 753 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=15.37;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:93:786,93,0 chrXVI 789991 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.15;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1484,168,0 chrXVI 790006 . G A 1870 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.78;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1903,210,0 chrXVI 790319 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.30;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,104:104:99:2248,255,0 chrXVI 790660 . A C 2073 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.13;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2106,237,0 chrXVI 790673 . C G 1838 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.76;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,97:98:99:1871,207,0 chrXVI 790742 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.22;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,105:106:99:1964,219,0 chrXVI 790766 . A C 1836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.325;QD=18.00;ReadPosRankSum=1.460;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,101:102:99:1869,213,0 chrXVI 790820 . C T 981 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.52;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1014,111,0 chrXVI 790856 . T C 982 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.46;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1015,114,0 chrXVI 790859 . A G 948 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.011;QD=19.75;ReadPosRankSum=1.660;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:981,111,0 chrXVI 790991 . C T 1002 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.87;SB=-2.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1035,111,0 chrXVI 791329 . A G 965 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.54;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:998,111,0 chrXVI 791787 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.60;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:913,99,0 chrXVI 792213 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.43;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1919,222,0 chrXVI 792460 . C T 2291 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.753;DP=147;Dels=0.00;FS=4.624;HaplotypeScore=6.7623;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=0.585;QD=15.59;ReadPosRankSum=-0.418;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:1,145:147:99:2324,234,0 chrXVI 792467 . C T 2192 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=14.42;SB=-1.446e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2225,243,0 chrXVI 792547 . A G 1935 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.102;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.072;QD=19.95;ReadPosRankSum=1.696;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:1,95:97:99:1968,228,0 chrXVI 792647 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.81;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1756,192,0 chrXVI 793048 . T C 1073 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=80;Dels=0.00;FS=10.822;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.782;QD=13.41;ReadPosRankSum=2.911;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:3,76:80:99:1106,123,0 chrXVI 793049 . T C 1100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.748;QD=13.58;ReadPosRankSum=1.689;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1133,126,0 chrXVI 793555 . T G 1232 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.40;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1265,147,0 chrXVI 793650 . G A 1081 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.9479;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.65;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1114,126,0 chrXVI 793862 . C T 1923 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.67;SB=-1.113e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:1956,213,0 chrXVI 793867 . G A 1845 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.91;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1878,201,0 chrXVI 794337 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.37;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2396,279,0 chrXVI 794615 . T C 2819 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.2552;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=20.73;SB=-1.264e+03 GT:AD:DP:GQ:PL 1/1:0,133:136:99:2852,330,0 chrXVI 794674 . T A 2078 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.99;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:2111,228,0 chrXVI 794702 . A T 1220 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=7.312;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=-0.594;QD=17.43;ReadPosRankSum=1.534;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:1253,138,0 chrXVI 794728 . A G 1062 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.17;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1095,126,0 chrXVI 795138 . A G 866 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.041;DP=44;Dels=0.00;FS=2.506;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.245;QD=19.68;ReadPosRankSum=3.123;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:4,40:44:99:899,102,0 chrXVI 795139 . G A 802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.607;DP=44;Dels=0.00;FS=2.592;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-0.605;QD=18.23;ReadPosRankSum=2.561;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:3,41:44:93:835,93,0 chrXVI 795157 . G A 750 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.83;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:84:783,84,0 chrXVI 795291 . G A 1474 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.00;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1507,168,0 chrXVI 795324 . T C 1726 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.80;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1759,195,0 chrXVI 795527 . T C 1132 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.20;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1165,132,0 chrXVI 796263 . T C 2147 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=8.756;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.964;QD=20.25;ReadPosRankSum=2.403;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:2,104:106:99:2180,243,0 chrXVI 796905 . A G 2063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.771;DP=101;Dels=0.00;FS=10.119;HaplotypeScore=6.6089;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.410;QD=20.43;ReadPosRankSum=2.931;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:3,98:101:99:2096,234,0 chrXVI 797009 . T C 1521 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=17.09;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1554,177,0 chrXVI 797063 . T C 1466 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=15.11;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1499,171,0 chrXVI 797065 . C T 1499 SnpCluster AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=15.45;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,96:97:99:1532,171,0 chrXVI 797066 . C T 1469 SnpCluster AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;QD=15.30;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1502,171,0 chrXVI 797069 . T C 1439 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.139;QD=14.39;ReadPosRankSum=1.594;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:1,99:100:99:1472,171,0 chrXVI 797136 . C A 1701 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.78;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1734,189,0 chrXVI 797247 . G A 1823 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.19;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1856,201,0 chrXVI 797420 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=22.55;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1228,138,0 chrXVI 797530 . T C 1273 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.45;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1306,150,0 chrXVI 797744 . T C 735 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:768,90,0 chrXVI 798164 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.16;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1446,165,0 chrXVI 798490 . A C 2119 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.85;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2152,243,0 chrXVI 798565 . A G 1845 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=96;Dels=0.00;FS=3.250;HaplotypeScore=10.9847;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.434;QD=19.22;ReadPosRankSum=1.695;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:1,93:96:99:1878,207,0 chrXVI 798639 . G A 2236 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.90;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2269,246,0 chrXVI 798911 . G A 2550 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.4015;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.08;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,126:127:99:2583,276,0 chrXVI 798952 . T C 1835 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=17.82;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1868,210,0 chrXVI 798977 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.28;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1761,192,0 chrXVI 799015 . T A 1531 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7518;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.320;QD=18.01;ReadPosRankSum=1.650;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1564,180,0 chrXVI 799159 . T C 2050 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.58;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2083,237,0 chrXVI 799228 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.60;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,81:84:99:1847,213,0 chrXVI 799432 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.2232;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.75;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1921,216,0 chrXVI 799593 . T C 1447 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.10;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1480,168,0 chrXVI 799713 . A C 1819 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.536;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.294;QD=23.03;ReadPosRankSum=1.688;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1852,210,0 chrXVI 799851 . T C 1264 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=78;Dels=0.00;FS=6.193;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-1.040;QD=16.21;ReadPosRankSum=2.909;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:3,74:78:99:1297,150,0 chrXVI 799871 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.39;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1332,144,0 chrXVI 799893 . A G 1012 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=16.06;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1045,117,0 chrXVI 799899 . T C 911 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=14.23;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:944,105,0 chrXVI 799990 . G A 1096 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.27;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1129,123,0 chrXVI 800037 . C A 1857 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.93;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1890,207,0 chrXVI 800109 . G C 1932 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.47;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1965,225,0 chrXVI 800157 . C A 1572 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.53;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1605,174,0 chrXVI 800175 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.70;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1432,153,0 chrXVI 800298 . A G 996 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.53;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1029,120,0 chrXVI 800388 . G A 1689 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.4297;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.35;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1722,189,0 chrXVI 800421 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.23;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1648,189,0 chrXVI 800445 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.75;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1533,168,0 chrXVI 800486 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=15.80;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1455,165,0 chrXVI 800493 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=14.24;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1272,144,0 chrXVI 800589 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=19.06;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,84:86:99:1672,189,0 chrXVI 800601 . G A 1588 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.6578;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.84;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1621,177,0 chrXVI 800727 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.30;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1950,219,0 chrXVI 800844 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.03;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=16.87;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1838,195,0 chrXVI 800848 . C T 1859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=9.396;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=0.110;QD=16.90;ReadPosRankSum=2.716;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:3,107:110:99:1892,204,0 chrXVI 800883 . A G 1999 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.80;SB=-1.333e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2032,231,0 chrXVI 800985 . C T 1689 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.98;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1722,186,0 chrXVI 801066 . G A 1792 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8417;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.27;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1825,201,0 chrXVI 801126 . G A 2099 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.08;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2132,231,0 chrXVI 801138 . C T 2215 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5101;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.78;SB=-1.496e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2248,240,0 chrXVI 801336 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.46;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2029,225,0 chrXVI 801399 . A T 2509 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.02;SB=-1.164e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2542,276,0 chrXVI 801606 . A G 2239 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=3.810;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.138;QD=19.81;ReadPosRankSum=1.671;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:1,112:113:99:2272,255,0 chrXVI 801614 . T C 2011 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=114;Dels=0.00;FS=2.601;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-2.755;QD=17.64;ReadPosRankSum=2.937;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:3,108:114:99:2044,234,0 chrXVI 801650 . C T 2307 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.07;SB=-1.334e+03 GT:AD:DP:GQ:PL 1/1:0,119:121:99:2340,255,0 chrXVI 801741 . G A 2348 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.07;SB=-1.434e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2381,267,0 chrXVI 801756 . C G 2256 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.96;SB=-1.403e+03 GT:AD:DP:GQ:PL 1/1:0,116:119:99:2289,258,0 chrXVI 801978 . T C 2071 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.72;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,105:105:99:2104,240,0 chrXVI 802039 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.80;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1948,213,0 chrXVI 802086 . C A 1951 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.79;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1984,219,0 chrXVI 802158 . A T 633 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.18;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:666,72,0 chrXVI 802249 . G A 984 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.68;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1017,111,0 chrXVI 802310 . T C 1193 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=64;Dels=0.00;FS=4.991;HaplotypeScore=9.3835;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.691;QD=18.64;ReadPosRankSum=3.312;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:4,59:64:99:1226,138,0 chrXVI 802415 . A G 1090 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.58;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1123,132,0 chrXVI 802427 . A G 969 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.774;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.229;QD=15.63;ReadPosRankSum=1.621;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1002,114,0 chrXVI 802502 . G A 863 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.60;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:896,102,0 chrXVI 802526 . T A 896 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-1.657;QD=19.48;ReadPosRankSum=1.657;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:929,102,0 chrXVI 802577 . T C 1012 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=16.59;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1045,120,0 chrXVI 802797 . C A 1700 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=15.8927;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=19.54;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,84:87:99:1733,189,0 chrXVI 802871 . C T 2538 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.13;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2571,276,0 chrXVI 802959 . A G 2320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.151;QD=22.52;ReadPosRankSum=1.665;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2353,276,0 chrXVI 803255 . C T 2697 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.93;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2730,297,0 chrXVI 803489 . T C 1667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.048;QD=21.93;ReadPosRankSum=1.687;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1700,189,0 chrXVI 803543 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.82;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1648,189,0 chrXVI 803590 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.41;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1482,168,0 chrXVI 804027 . T C 1597 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.18;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1630,180,0 chrXVI 804249 . A T 2192 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.93;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2225,249,0 chrXVI 804258 . T C 1974 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=103;Dels=0.00;FS=2.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.119;QD=19.17;ReadPosRankSum=2.099;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:3,99:103:99:2007,228,0 chrXVI 804292 . A T 1920 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.87;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1953,210,0 chrXVI 804352 . C T 1583 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=22.94;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1616,174,0 chrXVI 804481 . T C 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;DP=83;Dels=0.02;FS=10.774;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;MQRankSum=0.463;QD=19.61;ReadPosRankSum=2.913;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:3,78:81:99:1661,189,0 chrXVI 810562 . A G 30.08 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;DP=8;Dels=0.00;FS=3.332;HaplotypeScore=8.5757;MLEAC=1;MLEAF=0.500;MQ=46.96;MQ0=0;MQRankSum=1.067;QD=3.76;ReadPosRankSum=-0.572;SB=-4.507e+01 GT:AD:DP:GQ:PL 0/1:2,6:8:15:60,0,15 chrXVI 810641 . A G 776 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=0.083;QD=18.48;ReadPosRankSum=1.650;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:809,90,0 chrXVI 810774 . T G 492 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=15.37;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:525,60,0 chrXVI 810775 . T A 515 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=16.09;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:60:548,60,0 chrXVI 810776 . T G 510 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.48;MQ0=0;QD=15.45;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:63:543,63,0 chrXVI 810785 . G A 768 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=17.45;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:801,90,0 chrXVI 811809 . C T 1723 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5546;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.36;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1756,198,0 chrXVI 811965 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1378,156,0 chrXVI 812355 . C T 1396 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.48;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1429,156,0 chrXVI 812762 . T C 528 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.09;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:35:63:561,63,0 chrXVI 812990 . T C 231 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-4.898e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:30:264,30,0 chrXVI 813147 . T C 1618 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.833;QD=22.47;ReadPosRankSum=2.347;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:2,70:72:99:1651,192,0 chrXVI 813201 . A G 1652 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1685,195,0 chrXVI 813366 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.00;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1083,126,0 chrXVI 813489 . T C 1950 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.67;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1983,222,0 chrXVI 813633 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.37;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1572,168,0 chrXVI 813693 . G C 1689 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.60;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1722,198,0 chrXVI 813714 . T C 1537 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=6.081;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.583;QD=20.77;ReadPosRankSum=2.383;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:2,72:74:99:1570,177,0 chrXVI 813738 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.65;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1582,177,0 chrXVI 814111 . T C 1103 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=15.11;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1136,126,0 chrXVI 814795 . C T 1164 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.42;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1197,132,0 chrXVI 815038 . A G 1036 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.752;QD=19.55;ReadPosRankSum=1.602;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1069,120,0 chrXVI 816296 . A G 1578 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.34;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1611,186,0 chrXVI 816544 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.31;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1346,153,0 chrXVI 816724 . C T 1314 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.86;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1347,150,0 chrXVI 816745 . A G 1353 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.55;SB=-3.010e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1386,153,0 chrXVI 816914 . G T 1043 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.68;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1076,117,0 chrXVI 817039 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1059,114,0 chrXVI 818108 . T C 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-0.400;QD=19.26;ReadPosRankSum=1.599;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:1535,177,0 chrXVI 818228 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=19.47;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1493,165,0 chrXVI 818284 . C T 1961 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=22.54;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:87:99:1994,219,0 chrXVI 818346 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.90;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1350,150,0 chrXVI 818493 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.02;SB=-1.277e+03 GT:AD:DP:GQ:PL 1/1:0,112:113:99:2069,228,0 chrXVI 818562 . G A 456.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.645;DP=135;Dels=0.00;FS=0.664;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=0;MQRankSum=-8.814;QD=3.38;ReadPosRankSum=-7.671;SB=-4.080e+02 GT:AD:DP:GQ:PL 0/1:85,50:135:99:486,0,479 chrXVI 818565 . C T 358.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;DP=136;Dels=0.00;FS=1.467;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=44.74;MQ0=0;MQRankSum=-8.810;QD=2.63;ReadPosRankSum=-7.881;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:91,45:136:99:388,0,520 chrXVI 818568 . C T 287.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.613;DP=136;Dels=0.00;FS=1.461;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=44.96;MQ0=0;MQRankSum=-9.033;QD=2.11;ReadPosRankSum=-9.164;SB=-3.130e+02 GT:AD:DP:GQ:PL 0/1:93,43:136:99:317,0,534 chrXVI 818975 . A G 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=1.039;QD=19.11;ReadPosRankSum=1.655;SB=-2.130e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:893,99,0 chrXVI 819285 . G T 431 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.96;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:51:464,51,0 chrXVI 819289 . T C 431 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=18.74;SB=-2.430e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:464,51,0 chrXVI 819290 . G C 421 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.30;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:51:454,51,0 chrXVI 819294 . T C 352 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=14.67;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:385,42,0 chrXVI 819312 . T G 250 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.445;QD=10.42;ReadPosRankSum=1.589;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:33:283,33,0 chrXVI 819411 . G A 1030 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=55.0910;MLEAC=2;MLEAF=1.00;MQ=42.59;MQ0=0;QD=16.89;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1063,120,0 chrXVI 819431 . A G 876 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=13.48;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:909,102,0 chrXVI 819444 . C G 900 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;QD=13.24;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:933,108,0 chrXVI 819479 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=16.82;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1059,114,0 chrXVI 819509 . A T 937 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.02;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:970,105,0 chrXVI 819614 . C T 853 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=17.41;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:886,96,0 chrXVI 819645 . C T 524 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=9.53;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:63:557,63,0 chrXVI 819681 . C A 705 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=10.85;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,62:65:81:738,81,0 chrXVI 820254 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.10;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1580,183,0 chrXVI 820290 . A G 1304 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.702;QD=17.62;ReadPosRankSum=1.685;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1337,150,0 chrXVI 821166 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.78;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1299,141,0 chrXVI 821462 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.51;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1223,132,0 chrXVI 821526 . C T 53.22 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=35.0311;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=1.051;QD=1.36;ReadPosRankSum=-0.350;SB=-4.452e+02 GT:AD:DP:GQ:PL 0/1:2,37:39:10:83,0,10 chrXVI 821582 . G A 490 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=15.81;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:57:523,57,0 chrXVI 821586 . A G 412 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=12.48;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:51:445,51,0 chrXVI 821710 . G T 654 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.17;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:75:687,75,0 chrXVI 821711 . A G 594 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.97;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:627,72,0 chrXVI 822037 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.07;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:2155,234,0 chrXVI 822297 . C G 1422 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=15.63;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1455,162,0 chrXVI 822502 . C T 1987 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.67;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2020,228,0 chrXVI 822514 . G A 2158 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.62;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,109:110:99:2191,237,0 chrXVI 822591 . C G 2453 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.50;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2486,279,0 chrXVI 822808 . T C 2022 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.90;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,106:107:99:2055,234,0 chrXVI 822901 . A G 2451 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.346;HaplotypeScore=5.9754;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.387;QD=19.93;ReadPosRankSum=1.703;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:1,120:123:99:2484,288,0 chrXVI 823381 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.63;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1654,183,0 chrXVI 824056 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.34;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1292,144,0 chrXVI 824110 . C T 778 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=18.98;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:87:811,87,0 chrXVI 824182 . A C 865 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.76;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:898,102,0 chrXVI 824188 . G A 784 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.19;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:817,90,0 chrXVI 824466 . T C 1079 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1112,129,0 chrXVI 824483 . A T 1301 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.68;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1334,147,0 chrXVI 824738 . C T 821 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.05;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:93:854,93,0 chrXVI 824941 . C T 1825 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.40;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1858,204,0 chrXVI 825000 . T C 853 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=57.8895;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=12.36;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:886,99,0 chrXVI 825040 . C G 1117 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=13.79;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1150,132,0 chrXVI 825051 . A G 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=8.931;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.483;QD=13.56;ReadPosRankSum=1.692;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:1,85:86:99:1199,141,0 chrXVI 825536 . C T 2171 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.28;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,100:102:99:2204,243,0 chrXVI 825571 . C G 2010 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2043,237,0 chrXVI 825826 . A G 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.714;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.455;QD=18.82;ReadPosRankSum=2.391;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1614,186,0 chrXVI 826128 . A C 1530 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.50;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1563,177,0 chrXVI 826395 . C T 2537 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.06;SB=-1.294e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2570,276,0 chrXVI 826410 . A C 2118 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.79;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2151,243,0 chrXVI 826577 . C A 937 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.31;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:970,105,0 chrXVI 826793 . C T 1516 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.97;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1549,168,0 chrXVI 826929 . C T 780 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.53;SB=-2.640e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:90:813,90,0 chrXVI 827031 . A T 1385 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1418,156,0 chrXVI 827379 . G A 1665 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.7201;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.36;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1698,186,0 chrXVI 827639 . G T 1371 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.78;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1404,153,0 chrXVI 827703 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.62;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1634,177,0 chrXVI 827715 . A G 1285 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.10;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1318,147,0 chrXVI 827752 . C T 1107 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=16.28;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1140,123,0 chrXVI 827997 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.86;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1334,147,0 chrXVI 828006 . T C 1283 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4977;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=17.82;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:72:99:1316,147,0 chrXVI 828087 . G A 1753 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.07;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1786,207,0 chrXVI 828154 . T C 1703 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.02;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1736,198,0 chrXVI 828223 . T A 1658 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.63;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1691,186,0 chrXVI 828256 . T G 1544 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.32;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1577,177,0 chrXVI 828434 . G T 2011 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.10;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2044,219,0 chrXVI 828477 . A G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.599;QD=20.78;ReadPosRankSum=1.688;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,77:79:99:1675,186,0 chrXVI 828563 . A G 1768 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.56;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1801,201,0 chrXVI 828592 . C A 1636 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.48;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1669,180,0 chrXVI 829002 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=17.23;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1325,150,0 chrXVI 829194 . A G 1246 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=68;Dels=0.00;FS=8.621;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.925;QD=18.32;ReadPosRankSum=3.323;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:4,64:68:99:1279,147,0 chrXVI 829307 . C T 905 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.75;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:938,102,0 chrXVI 829372 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=16.95;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:965,105,0 chrXVI 829418 . A C 1049 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.73;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1082,120,0 chrXVI 829624 . T C 874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=5.141;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.247;QD=17.84;ReadPosRankSum=1.662;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:907,105,0 chrXVI 829698 . C T 764 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.65;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:84:797,84,0 chrXVI 829707 . T G 746 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.13;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:90:779,90,0 chrXVI 829730 . C T 962 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.63;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:995,105,0 chrXVI 830857 . T C 397 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:48:430,48,0 chrXVI 831160 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.68;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1332,147,0 chrXVI 831178 . A G 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=69;Dels=0.00;FS=12.240;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.272;QD=19.23;ReadPosRankSum=2.377;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:2,67:69:99:1360,156,0 chrXVI 831235 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.28;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1498,162,0 chrXVI 831601 . G A 1192 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=18.34;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1225,138,0 chrXVI 832034 . A C 1870 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.89;SB=-1.154e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:1903,213,0 chrXVI 832082 . G C 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;DP=77;Dels=0.01;FS=62.643;HaplotypeScore=9.8249;MLEAC=1;MLEAF=0.500;MQ=55.34;MQ0=0;MQRankSum=-1.315;QD=0.18;ReadPosRankSum=-4.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,20:76:44:44,0,540 chrXVI 832084 . T C 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.3476;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.299;QD=14.40;ReadPosRankSum=1.602;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:99:1185,141,0 chrXVI 832297 . C T 2684 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5848;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.66;SB=-1.872e+03 GT:AD:DP:GQ:PL 1/1:0,150:152:99:2717,303,0 chrXVI 832535 . T C 2024 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.65;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2057,237,0 chrXVI 832631 . G A 2220 PASS AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=17.90;SB=-1.196e+03 GT:AD:DP:GQ:PL 1/1:0,124:124:99:2253,252,0 chrXVI 832685 . A G 2305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=2.906;HaplotypeScore=10.5662;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.848;QD=17.87;ReadPosRankSum=2.335;SB=-1.388e+03 GT:AD:DP:GQ:PL 1/1:2,127:129:99:2338,261,0 chrXVI 832863 . A G 1928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=4.107;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-1.217;QD=15.93;ReadPosRankSum=1.646;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,120:121:99:1961,219,0 chrXVI 833262 . T C 2315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=123;Dels=0.00;FS=12.710;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.271;QD=18.82;ReadPosRankSum=2.845;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:3,120:123:99:2348,267,0 chrXVI 833382 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.11;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,83:85:99:1487,162,0 chrXVI 833395 . T A 1110 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=15.42;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1143,123,0 chrXVI 833870 . G A 3176 PASS AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.37;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,141:142:99:3209,348,0 chrXVI 834011 . G A 2527 PASS AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.44;SB=-1.309e+03 GT:AD:DP:GQ:PL 1/1:0,130:130:99:2560,297,0 chrXVI 834110 . T C 1603 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.344;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.060;QD=18.43;ReadPosRankSum=1.573;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,86:87:99:1636,189,0 chrXVI 834185 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.99;SB=-1.371e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2552,294,0 chrXVI 834442 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.66;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1642,183,0 chrXVI 834513 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.13;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2047,234,0 chrXVI 834517 . G A 2038 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.16;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2071,222,0 chrXVI 834629 . G A 1572 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.24;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1605,171,0 chrXVI 834888 . C G 1222 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.24;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,65:67:99:1255,144,0 chrXVI 835213 . G A 1272 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.87;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1305,141,0 chrXVI 835242 . T G 1358 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.90;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1391,159,0 chrXVI 835306 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2150;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.38;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1957,210,0 chrXVI 835496 . C A 1195 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.73;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1228,138,0 chrXVI 835608 . G A 1633 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.44;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1666,180,0 chrXVI 835623 . T A 1251 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.25;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1284,141,0 chrXVI 836340 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.86;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1334,144,0 chrXVI 836521 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.14;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1644,180,0 chrXVI 837009 . C T 1745 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.28;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1778,192,0 chrXVI 837416 . A C 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.752;QD=20.20;ReadPosRankSum=2.256;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1063,120,0 chrXVI 837483 . A G 822 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.57;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:855,96,0 chrXVI 837567 . G A 731 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.27;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:81:764,81,0 chrXVI 837622 . G A 347 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.46;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:42:380,42,0 chrXVI 838043 . G A 688 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=6;QD=15.64;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:78:721,78,0 chrXVI 838104 . T C 652 filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=8;QD=12.30;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:78:685,78,0 chrXVI 838274 . A G 706 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.79;MQ0=1;MQRankSum=-1.732;QD=13.84;ReadPosRankSum=1.594;SB=-2.501e+01 GT:AD:DP:GQ:PL 1/1:1,50:51:81:739,81,0 chrXVI 838299 . G A 857 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.0182;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=1;QD=15.30;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:96:890,96,0 chrXVI 838562 . A C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.51;MQ0=13;QD=1.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,14:15:6:53,6,0 chrXVI 838563 . G A 26.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.98;MQ0=12;QD=1.91;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:6:58,6,0 chrXVI 838604 . C T 32.77 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=2;QD=8.19;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:6:64,6,0 chrXVI 838833 . A G 471 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=14;QD=11.77;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:60:504,60,0 chrXVI 838970 . T A 739 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=24.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,30:30:84:772,84,0 chrXVI 839097 . C T 111.42 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DP=39;Dels=0.00;FS=14.472;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=15.77;MQ0=11;MQRankSum=-0.990;QD=2.86;ReadPosRankSum=-0.371;SB=-3.421e+00 GT:AD:DP:GQ:PL 0/1:6,33:39:7:141,0,7 chrXVI 839116 . A C 36.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=15.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.09;MQ0=0;MQRankSum=-1.408;QD=1.16;ReadPosRankSum=1.625;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:1,31:32:9:69,9,0 chrXVI 839117 . C A 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=0;QD=1.26;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:9:71,9,0 chrXVI 839118 . C T 37.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.82;MQ0=0;QD=1.22;SB=-9.813e-01 GT:AD:DP:GQ:PL 1/1:0,31:31:9:70,9,0 chrXVI 839142 . T A 315 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;MQRankSum=-1.412;QD=5.83;ReadPosRankSum=1.668;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:39:348,39,0 chrXVI 839169 . C T 457 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5411;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=7.88;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:57:490,57,0 chrXVI 839190 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=11.76;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:81:680,81,0 chrXVI 839265 . A G 797 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=18.11;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:96:830,96,0 chrXVI 839292 . A G 690 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=14.08;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:84:723,84,0 chrXVI 839313 . C T 569 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.23;MQ0=0;QD=10.94;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:66:602,66,0 chrXVI 839316 . A G 621 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=11.29;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:75:654,75,0 chrXVI 839436 . A G 1909 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.48;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1942,225,0 chrXVI 839445 . A G 1728 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.1871;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.38;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,93:94:99:1761,207,0 chrXVI 839499 . T C 1080 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=14.79;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,70:73:99:1113,129,0 chrXVI 839670 . A G 1051 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.44;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1084,123,0 chrXVI 840103 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1593,171,0 chrXVI 840263 . T A 1339 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.13;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1372,147,0 chrXVI 840482 . C G 603 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.71;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:72:636,72,0 chrXVI 841449 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.15;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1222,138,0 chrXVI 841490 . T C 1154 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=63;Dels=0.00;FS=7.788;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.294;QD=18.32;ReadPosRankSum=2.333;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:99:1187,135,0 chrXVI 841702 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.19;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1453,171,0 chrXVI 841742 . T C 995 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.43;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1028,117,0 chrXVI 842051 . A G 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=3.623;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.593;QD=21.86;ReadPosRankSum=1.641;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,75:77:99:1716,195,0 chrXVI 842084 . T C 1096 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.08;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1129,129,0 chrXVI 842219 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.60;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1346,147,0 chrXVI 842811 . A G 1493 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.70;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1526,174,0 chrXVI 842864 . A T 1153 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.62;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1186,129,0 chrXVI 843391 . T C 1239 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.36;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1272,147,0 chrXVI 843754 . A G 1931 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=7.936;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.878;QD=20.54;ReadPosRankSum=2.293;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:2,92:94:99:1964,222,0 chrXVI 843861 . C T 1887 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.46;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1920,204,0 chrXVI 843881 . T C 1889 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=22.22;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1922,216,0 chrXVI 843966 . T G 1027 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.34;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1060,117,0 chrXVI 844001 . G A 880 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.72;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:913,99,0 chrXVI 844011 . T C 1003 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.92;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1036,120,0 chrXVI 844046 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.82;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1076,126,0 chrXVI 844058 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=17.02;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1139,129,0 chrXVI 844382 . G T 1031 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=18.41;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1064,117,0 chrXVI 850463 . A C 1713 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.997;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=-0.899;QD=21.68;ReadPosRankSum=1.688;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:1746,198,0 chrXVI 850487 . T G 929 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;MQRankSum=0.955;QD=18.96;ReadPosRankSum=1.591;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:962,108,0 chrXVI 850488 . G A 982 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=20.46;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1015,108,0 chrXVI 850531 . C G 1048 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=20.96;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1081,123,0 chrXVI 856890 . A C 100.26 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=2.71;SB=-1.933e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:15:133,15,0 chrXVI 857345 . T A 972 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.69;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1005,111,0 chrXVI 857636 . C G 2193 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.38;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2226,249,0 chrXVI 858788 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0201;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1312,150,0 chrXVI 859250 . A G 1405 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.07;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1438,168,0 chrXVI 859791 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.03;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:2199,255,0 chrXVI 860105 . C T 1075 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.87;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1108,120,0 chrXVI 860149 . T A 1216 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1249,135,0 chrXVI 860239 . T A 1690 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.53;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1723,189,0 chrXVI 860272 . A G 1931 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.22;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1964,225,0 chrXVI 860359 . C T 877 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=18.66;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:910,102,0 chrXVI 860362 . A T 886 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.37;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:919,99,0 chrXVI 860540 . A G 2312 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2345,258,0 chrXVI 860806 . A G 1364 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.43;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1397,159,0 chrXVI 861771 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.78;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1645,186,0 chrXVI 861839 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.16;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1828,204,0 chrXVI 862247 . A G 1505 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.047;QD=20.07;ReadPosRankSum=1.685;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,73:75:99:1538,177,0 chrXVI 863372 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.91;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1706,192,0 chrXVI 863829 . C T 1565 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.36;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1598,174,0 chrXVI 864016 . T C 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.446;DP=64;Dels=0.00;FS=2.167;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.541;QD=16.83;ReadPosRankSum=1.112;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:3,61:64:99:1110,126,0 chrXVI 864283 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.45;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1642,183,0 chrXVI 864343 . T C 1368 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.006;QD=22.06;ReadPosRankSum=1.676;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1401,162,0 chrXVI 864677 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.35;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1230,135,0 chrXVI 864798 . T C 1327 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.69;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1360,153,0 chrXVI 864893 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.45;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,96:96:99:1804,198,0 chrXVI 864909 . T C 1592 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.09;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,86:88:99:1625,183,0 chrXVI 865057 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.20;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1284,138,0 chrXVI 865085 . A T 1112 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.51;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1145,123,0 chrXVI 865102 . A G 1013 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.42;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1046,117,0 chrXVI 865226 . C T 1026 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.82;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1059,117,0 chrXVI 865451 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.24;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2554,276,0 chrXVI 865498 . C T 2166 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.66;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2199,243,0 chrXVI 866267 . C G 1541 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,77:79:99:1574,177,0 chrXVI 866381 . T C 1092 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1125,126,0 chrXVI 868093 . A G 1243 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=64;Dels=0.00;FS=5.831;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.533;QD=19.42;ReadPosRankSum=2.889;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:3,60:64:99:1276,144,0 chrXVI 868344 . T C 819 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=15.75;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:96:852,96,0 chrXVI 868353 . T G 618 filter AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=13.73;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:45:75:651,75,0 chrXVI 868671 . T C 1152 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.079;QD=24.00;ReadPosRankSum=2.345;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,45:48:99:1185,132,0 chrXVI 869017 . G A 1016 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=15.63;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1049,114,0 chrXVI 869020 . A G 856 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-1.732;QD=12.59;ReadPosRankSum=1.681;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,66:68:99:889,102,0 chrXVI 869023 . A G 827 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=12.72;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:860,99,0 chrXVI 869074 . A G 713 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=11.50;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:84:746,84,0 chrXVI 869167 . G A 780 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:813,90,0 chrXVI 869242 . A G 1071 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.058;QD=17.85;ReadPosRankSum=1.675;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1104,129,0 chrXVI 869386 . A G 967 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.91;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1000,120,0 chrXVI 869863 . G A 1725 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2901;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.60;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1758,195,0 chrXVI 870043 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.94;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1429,156,0 chrXVI 870491 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.57;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1848,201,0 chrXVI 870525 . G C 1595 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.85;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1628,189,0 chrXVI 870673 . C G 1554 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1587,186,0 chrXVI 870906 . G T 1412 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.65;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1445,162,0 chrXVI 871215 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.26;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1436,162,0 chrXVI 871222 . G T 1427 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=22.65;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1460,159,0 chrXVI 871361 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.8979;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.93;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,98:99:99:2204,255,0 chrXVI 871536 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.51;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,76:78:99:1789,195,0 chrXVI 871617 . A T 1472 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.5542;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.95;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1505,162,0 chrXVI 871620 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=16.65;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1415,153,0 chrXVI 871689 . A C 1687 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.76;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1720,198,0 chrXVI 871860 . T C 1168 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1201,135,0 chrXVI 872172 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.56;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1148,129,0 chrXVI 872338 . T A 1016 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.54;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1049,111,0 chrXVI 872691 . A G 1755 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:1788,204,0 chrXVI 872874 . T A 1736 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.84;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1769,192,0 chrXVI 872939 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.46;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1535,168,0 chrXVI 872987 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.70;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1267,135,0 chrXVI 873070 . T C 1202 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.85;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1235,141,0 chrXVI 873134 . T A 1188 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.28;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1221,132,0 chrXVI 873246 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1469,165,0 chrXVI 873345 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.98;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1154,129,0 chrXVI 873415 . A T 671 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=15.98;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:78:704,78,0 chrXVI 873426 . T C 765 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.63;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:798,90,0 chrXVI 873450 . A C 700 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=16.28;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:733,84,0 chrXVI 873684 . T C 1064 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.28;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1097,129,0 chrXVI 874146 . A C 2314 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3666;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.83;SB=-1.308e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2347,264,0 chrXVI 874514 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0056;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.38;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1375,153,0 chrXVI 874530 . C A 1068 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=14.83;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1101,123,0 chrXVI 874564 . T C 1100 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=13.3972;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=11.96;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1133,126,0 chrXVI 874996 . A G 2050 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.30;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2083,237,0 chrXVI 875078 . T G 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=118;Dels=0.00;FS=19.071;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.324;QD=15.47;ReadPosRankSum=2.880;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:3,106:118:99:1858,213,0 chrXVI 876278 . T A 392 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;MQRankSum=-0.913;QD=21.78;ReadPosRankSum=2.178;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:2,16:18:45:425,45,0 chrXVI 876279 . T A 389 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.61;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:45:422,45,0 chrXVI 876647 . T C 1471 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.886;QD=20.43;ReadPosRankSum=2.346;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:2,69:71:99:1504,171,0 chrXVI 876811 . T C 1527 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.03;FS=0.000;HaplotypeScore=27.9549;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.35;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1560,177,0 chrXVI 876853 . A G 1993 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.289;DP=96;Dels=0.00;FS=33.678;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.009;QD=20.76;ReadPosRankSum=3.363;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:4,91:96:99:2026,240,0 chrXVI 876931 . T C 1237 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.67;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1270,144,0 chrXVI 877459 . G A 1412 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=16.42;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1445,159,0 chrXVI 878117 . A G 2675 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5021;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.11;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2708,306,0 chrXVI 878264 . G T 1241 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9493;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.55;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1274,141,0 chrXVI 878300 . T C 1161 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.86;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1194,135,0 chrXVI 878600 . T A 1232 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3415;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.440;QD=18.39;ReadPosRankSum=1.681;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1265,144,0 chrXVI 878637 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.11;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1426,159,0 chrXVI 878986 . T G 1597 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.901;QD=21.29;ReadPosRankSum=1.686;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1630,186,0 chrXVI 879007 . G T 1686 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6424;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.31;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1719,186,0 chrXVI 879511 . C T 1098 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.72;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1131,123,0 chrXVI 879520 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.27;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:965,102,0 chrXVI 879550 . C T 1142 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.84;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1175,129,0 chrXVI 879742 . T C 2330 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.99;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2363,267,0 chrXVI 879779 . A G 1924 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=3.052;HaplotypeScore=4.8411;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.698;QD=20.04;ReadPosRankSum=2.346;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:2,93:96:99:1957,222,0 chrXVI 880193 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.51;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2141,240,0 chrXVI 880238 . T G 1867 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=23.63;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1900,210,0 chrXVI 880285 . G A 113.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;DP=47;Dels=0.00;FS=28.898;HaplotypeScore=50.9072;MLEAC=1;MLEAF=0.500;MQ=48.51;MQ0=0;MQRankSum=2.024;QD=2.42;ReadPosRankSum=-5.176;SB=-6.440e-01 GT:AD:DP:GQ:PL 0/1:29,18:47:5:143,0,5 chrXVI 880373 . A C 334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;MQRankSum=-1.733;QD=12.37;ReadPosRankSum=1.605;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:1,26:27:42:367,42,0 chrXVI 880381 . A G 396 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=12.77;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:48:429,48,0 chrXVI 880396 . C T 551 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.50;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:584,66,0 chrXVI 880397 . A C 563 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.82;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:596,69,0 chrXVI 880399 . A G 559 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=14.71;SB=-1.630e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:66:592,66,0 chrXVI 880408 . C T 658 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=16.87;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:75:691,75,0 chrXVI 880514 . A T 1197 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.62;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1230,141,0 chrXVI 880557 . T A 1037 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.88;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1070,117,0 chrXVI 880606 . G A 45.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=0;QD=9.19;SB=-2.721e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:9:78,9,0 chrXVI 880820 . A G 1325 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.09;SB=-8.101e+01 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1358,150,0 chrXVI 880901 . T C 2192 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=1.191;QD=22.83;ReadPosRankSum=1.696;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:1,95:96:99:2225,255,0 chrXVI 880970 . C T 4368.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=24.82;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,176:176:99:4368,477,0 chrXVI 880994 . G A 3276.01 PASS AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=1.8857;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=15.75;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,208:208:99:3276,369,0 chrXVI 881021 . A G 3074 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=-1.280;QD=20.91;ReadPosRankSum=2.128;SB=-1.253e+03 GT:AD:DP:GQ:PL 1/1:2,143:147:99:3107,354,0 chrXVI 881245 . A G 4698.01 PASS AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.95;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,213:214:99:4698,534,0 chrXVI 881280 . A T 3020 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.342;QD=18.64;ReadPosRankSum=1.534;SB=-1.292e+03 GT:AD:DP:GQ:PL 1/1:1,161:162:99:3053,333,0 chrXVI 881444 . A G 1925 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.87;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1958,231,0 chrXVI 881459 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.73;SB=-1.212e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2072,228,0 chrXVI 881462 . T C 2011 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6863;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.90;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2044,237,0 chrXVI 881796 . A G 2897 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.78;SB=-1.649e+03 GT:AD:DP:GQ:PL 1/1:0,131:133:99:2930,330,0 chrXVI 881834 . C A 2761 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4706;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.45;SB=-1.652e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2794,303,0 chrXVI 882057 . T A 2821 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.90;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:1,134:135:99:2854,324,0 chrXVI 882103 . T A 2874 PASS AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.4902;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.29;SB=-1.643e+03 GT:AD:DP:GQ:PL 1/1:0,149:149:99:2907,318,0 chrXVI 882225 . A G 2608 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=0.082;QD=20.54;ReadPosRankSum=1.705;SB=-1.455e+03 GT:AD:DP:GQ:PL 1/1:1,125:127:99:2641,303,0 chrXVI 882292 . A C 2057 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=102;Dels=0.01;FS=2.703;HaplotypeScore=10.5747;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=-0.134;QD=20.17;ReadPosRankSum=2.401;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:2,99:101:99:2090,237,0 chrXVI 882337 . C A 2116 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.95;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2149,234,0 chrXVI 882493 . A G 1425 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=77;Dels=0.00;FS=2.943;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-0.080;QD=18.51;ReadPosRankSum=2.386;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1458,171,0 chrXVI 882509 . T A 1447 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=18.55;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1480,165,0 chrXVI 882555 . T C 1424 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=0;QD=16.95;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1457,168,0 chrXVI 882567 . A G 1316 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.81;MQ0=0;MQRankSum=-1.689;QD=16.25;ReadPosRankSum=1.689;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1349,150,0 chrXVI 882576 . C T 1313 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=16.83;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1346,147,0 chrXVI 882583 . T C 1157 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=16.07;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1190,135,0 chrXVI 882586 . C A 1163 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=15.93;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1196,129,0 chrXVI 882590 . C T 1043 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=15.80;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1076,117,0 chrXVI 882596 . A G 930 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;MQRankSum=0.289;QD=14.53;ReadPosRankSum=2.373;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:2,62:64:99:963,111,0 chrXVI 882608 . T C 749 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=13.37;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:93:782,93,0 chrXVI 882609 . C G 798 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=13.76;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:96:831,96,0 chrXVI 882632 . A C 906 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.082;DP=67;Dels=0.00;FS=7.061;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;MQRankSum=0.239;QD=13.52;ReadPosRankSum=2.376;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:2,65:67:99:939,105,0 chrXVI 882654 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=17.20;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1254,138,0 chrXVI 882679 . T C 1691 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.37;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1724,198,0 chrXVI 882721 . T C 1702 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.332;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.526;QD=20.26;ReadPosRankSum=1.691;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1735,195,0 chrXVI 882746 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=17.32;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1557,171,0 chrXVI 882768 . G T 1380 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=16.05;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1413,156,0 chrXVI 882787 . G A 1180 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=14.22;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,79:83:99:1213,132,0 chrXVI 882893 . C T 1074 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=17.05;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1107,123,0 chrXVI 882903 . T G 976 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=59;Dels=0.00;FS=2.728;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=-1.110;QD=16.54;ReadPosRankSum=2.325;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:2,57:59:99:1009,120,0 chrXVI 882906 . T C 953 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=16.72;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:986,114,0 chrXVI 882932 . T A 977 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=18.09;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1010,111,0 chrXVI 882949 . G A 834 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=15.16;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:867,99,0 chrXVI 883032 . A G 1659 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=1.133;QD=20.48;ReadPosRankSum=1.647;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:1,80:81:99:1692,192,0 chrXVI 883117 . G A 1779 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9705;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.27;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1812,198,0 chrXVI 883313 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.10;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1932,210,0 chrXVI 883526 . C G 340 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=12.14;SB=-4.901e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:42:373,42,0 chrXVI 883797 . G A 1606 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1639,180,0 chrXVI 883981 . G A 217.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.11;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:250,27,0 chrXVI 884263 . G A 1558 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.91;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1591,174,0 chrXVI 884286 . T C 934 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.76;SB=-2.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:967,108,0 chrXVI 884479 . A G 519 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.22;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:63:552,63,0 chrXVI 884616 . G C 1217 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.44;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1250,141,0 chrXVI 884655 . T G 1279 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.32;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1312,150,0 chrXVI 884709 . C T 838 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.22;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:96:871,96,0 chrXVI 884724 . G A 597 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.14;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:69:630,69,0 chrXVI 884742 . A G 536 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=13.74;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:69:569,69,0 chrXVI 884832 . G A 964 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.51;SB=-1.700e+02 GT:AD:DP:GQ:PL 1/1:0,39:41:99:997,108,0 chrXVI 884895 . A G 983 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.34;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1016,114,0 chrXVI 885178 . A G 2296 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=118;Dels=0.00;FS=5.037;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-1.468;QD=19.46;ReadPosRankSum=1.703;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2329,267,0 chrXVI 885190 . A G 2116 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.40;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,114:115:99:2149,243,0 chrXVI 885210 . A C 1968 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.39;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2001,228,0 chrXVI 885327 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.15;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1603,180,0 chrXVI 885444 . T G 2057 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.87;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,107:109:99:2090,243,0 chrXVI 885455 . A C 2050 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.64;SB=-1.260e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2083,237,0 chrXVI 885571 . C T 2541 PASS AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.25;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,131:132:99:2574,276,0 chrXVI 885753 . G C 1445 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.62;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:1478,168,0 chrXVI 885762 . T A 1391 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=18.30;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1424,156,0 chrXVI 885768 . G A 1542 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=19.27;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,77:80:99:1575,171,0 chrXVI 885822 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.50;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1221,135,0 chrXVI 885828 . A G 1167 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=83;Dels=0.00;FS=5.351;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-1.393;QD=14.06;ReadPosRankSum=3.328;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:4,79:83:99:1200,138,0 chrXVI 885864 . G A 1306 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=15.01;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1339,147,0 chrXVI 885942 . T C 2153 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2835;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.75;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,108:109:99:2186,246,0 chrXVI 885979 . T A 2214 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.817;QD=20.89;ReadPosRankSum=1.340;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:1,105:106:99:2247,252,0 chrXVI 886125 . A C 859 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.111;QD=18.28;ReadPosRankSum=1.585;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:892,105,0 chrXVI 886141 . G A 821 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=17.47;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:93:854,93,0 chrXVI 886188 . A G 658 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=14.62;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:78:691,78,0 chrXVI 886611 . A G 783 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.75;SB=-2.410e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:816,93,0 chrXVI 886734 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.04;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1323,144,0 chrXVI 886776 . A G 1200 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.00;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:60:99:1233,135,0 chrXVI 886812 . C T 1434 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.49;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1467,162,0 chrXVI 887016 . G A 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.029;QD=20.85;ReadPosRankSum=1.080;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1513,165,0 chrXVI 887070 . T C 1257 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.96;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1290,147,0 chrXVI 887343 . G A 1236 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.60;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1269,144,0 chrXVI 887394 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.80;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:93:852,93,0 chrXVI 887495 . G A 1037 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.52;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,54:56:99:1070,114,0 chrXVI 887622 . C T 1405 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.73;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1438,156,0 chrXVI 888159 . C G 1343 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=11.8790;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.04;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1376,156,0 chrXVI 888536 . G A 1654 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.93;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:1687,183,0 chrXVI 888868 . A T 1493 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=83;Dels=0.00;FS=2.616;HaplotypeScore=7.9092;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.671;QD=17.99;ReadPosRankSum=2.916;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:3,80:83:99:1526,171,0 chrXVI 889084 . A C 1469 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.60;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1502,171,0 chrXVI 889176 . C T 1019 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.53;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1052,114,0 chrXVI 889177 . A C 947 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.61;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:57:99:980,114,0 chrXVI 889219 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.86;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1840,204,0 chrXVI 889287 . T C 1830 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=1.555;QD=18.67;ReadPosRankSum=1.661;SB=-1.149e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:1863,213,0 chrXVI 889306 . C A 1728 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3972;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.81;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:1761,198,0 chrXVI 889330 . G A 1496 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=17.20;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1529,165,0 chrXVI 889357 . C T 1278 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=14.69;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,86:87:99:1311,144,0 chrXVI 889393 . T G 1276 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.57;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1309,156,0 chrXVI 889404 . G A 1310 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.24;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1343,147,0 chrXVI 889681 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.58;SB=-1.181e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:2089,234,0 chrXVI 889729 . T C 2301 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9994;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.31;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2334,273,0 chrXVI 890080 . C T 2400 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3898;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.51;SB=-1.159e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2433,270,0 chrXVI 890146 . G A 2004 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.55;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,92:93:99:2037,219,0 chrXVI 890236 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1333,150,0 chrXVI 890346 . T A 2139 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2172,240,0 chrXVI 890693 . T G 3060 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;DP=145;Dels=0.00;FS=5.238;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.875;QD=21.10;ReadPosRankSum=3.384;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:4,137:145:99:3093,342,0 chrXVI 890947 . A G 2174 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.8816;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.82;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,121:122:99:2207,255,0 chrXVI 891130 . A C 1912 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.48;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1945,216,0 chrXVI 891281 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.86;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1721,192,0 chrXVI 891335 . A G 1683 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.28;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1716,198,0 chrXVI 891539 . A T 2464 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.24;SB=-1.363e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2497,276,0 chrXVI 891619 . A G 2426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=4.455;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-1.340;QD=22.46;ReadPosRankSum=1.667;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:1,105:108:99:2459,276,0 chrXVI 891701 . G A 2612 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.2471;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.77;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,117:120:99:2645,288,0 chrXVI 891791 . G A 2342 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.91;SB=-1.231e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2375,270,0 chrXVI 892061 . C T 2596 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.9629;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.45;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2629,291,0 chrXVI 892106 . G A 2347 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.14;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2380,258,0 chrXVI 892211 . A C 1910 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.01;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1943,219,0 chrXVI 892273 . C G 1481 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9583;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.49;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1514,171,0 chrXVI 892406 . C T 1613 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1646,177,0 chrXVI 892624 . G A 1851 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.85;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1884,201,0 chrXVI 892709 . T A 1190 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1223,132,0 chrXVI 892994 . C T 2038 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.68;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,92:94:99:2071,225,0 chrXVI 893092 . G A 2558 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.05;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,109:111:99:2591,279,0 chrXVI 893447 . C G 1792 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=17.07;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1825,207,0 chrXVI 893672 . T C 1523 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.13;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1556,177,0 chrXVI 893806 . T G 1014 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.44;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1047,120,0 chrXVI 893821 . C T 945 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.6225;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.29;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:978,105,0 chrXVI 893822 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.6225;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.08;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:968,105,0 chrXVI 893913 . C T 577 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=16.03;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:66:610,66,0 chrXVI 893914 . T C 554 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=15.39;SB=-3.260e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:66:587,66,0 chrXVI 893971 . C T 748 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.00;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:84:781,84,0 chrXVI 894005 . T C 987 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.93;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1020,114,0 chrXVI 894033 . A G 781 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.52;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:93:814,93,0 chrXVI 894042 . G T 787 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.67;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:87:820,87,0 chrXVI 894150 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.59;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1078,117,0 chrXVI 894151 . C T 1076 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.08;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1109,120,0 chrXVI 894280 . G A 1009 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.93;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1042,114,0 chrXVI 894337 . T G 1061 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.471;QD=20.02;ReadPosRankSum=1.013;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1094,126,0 chrXVI 894511 . T C 1462 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.140;QD=19.76;ReadPosRankSum=1.685;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:1495,171,0 chrXVI 894844 . T A 2207 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.23;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2240,243,0 chrXVI 895022 . C G 1567 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.03;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,90:92:99:1600,186,0 chrXVI 895084 . C T 2403 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.65;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:0,111:111:99:2436,264,0 chrXVI 895354 . A G 2005 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.78;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2038,234,0 chrXVI 895702 . C T 1898 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7940;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.98;SB=-1.184e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1931,213,0 chrXVI 895777 . T C 1556 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=16.91;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1589,180,0 chrXVI 895801 . T C 1703 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-1.161;QD=17.56;ReadPosRankSum=1.661;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:1,96:97:99:1736,198,0 chrXVI 895917 . T C 2013 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.41;SB=-1.177e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2046,234,0 chrXVI 896116 . C T 1909 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.69;SB=-1.127e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1942,213,0 chrXVI 896257 . G A 1381 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.18;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1414,159,0 chrXVI 896267 . A G 1418 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.688;QD=19.16;ReadPosRankSum=1.590;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1451,168,0 chrXVI 896434 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.9710;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.95;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:2421,270,0 chrXVI 896467 . C T 2320 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.28;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2353,255,0 chrXVI 896539 . T C 1449 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;DP=76;Dels=0.00;FS=6.188;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.774;QD=19.07;ReadPosRankSum=2.774;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:3,73:76:99:1482,168,0 chrXVI 896591 . C A 1766 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.64;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1799,198,0 chrXVI 896727 . G A 2354 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.52;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2387,255,0 chrXVI 896834 . A G 1346 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;MQRankSum=-0.794;QD=18.44;ReadPosRankSum=2.315;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:2,71:73:99:1379,159,0 chrXVI 896848 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=15.60;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:67:99:1078,120,0 chrXVI 896854 . G A 1023 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=17.64;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1056,114,0 chrXVI 897140 . A G 291 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.19;SB=-5.301e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:39:324,39,0 chrXVI 897350 . A C 603 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:75:636,75,0 chrXVI 897538 . T C 771 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.13;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:93:804,93,0 chrXVI 897742 . T C 1050 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.849;QD=20.19;ReadPosRankSum=1.664;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1083,126,0 chrXVI 898021 . A G 2284 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;DP=112;Dels=0.00;FS=7.152;HaplotypeScore=10.0745;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.414;QD=20.39;ReadPosRankSum=1.700;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,108:112:99:2317,264,0 chrXVI 898057 . A C 2803 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=7.570;HaplotypeScore=5.1035;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.328;QD=23.36;ReadPosRankSum=1.703;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:1,119:120:99:2836,327,0 chrXVI 898123 . A G 1474 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.98;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,80:82:99:1507,171,0 chrXVI 898150 . C G 1754 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.49;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,89:90:99:1787,204,0 chrXVI 898411 . C T 3126 PASS AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.2078;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.04;SB=-1.628e+03 GT:AD:DP:GQ:PL 1/1:0,156:156:99:3159,342,0 chrXVI 898636 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.99;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1579,180,0 chrXVI 898897 . C T 2394 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.8593;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.19;SB=-1.357e+03 GT:AD:DP:GQ:PL 1/1:0,113:113:99:2427,264,0 chrXVI 898984 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1731,186,0 chrXVI 899050 . G A 1901 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.01;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:1934,213,0 chrXVI 899569 . C G 1412 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=16.61;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1445,171,0 chrXVI 899590 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=15.74;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1261,144,0 chrXVI 899602 . A G 1196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.660;DP=81;Dels=0.00;FS=7.863;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=-0.442;QD=14.77;ReadPosRankSum=3.719;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:5,76:81:99:1229,141,0 chrXVI 899924 . C T 1867 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.96;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1900,207,0 chrXVI 899969 . G T 1733 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=73.9419;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.47;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1766,192,0 chrXVI 900008 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.39;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,95:96:99:1798,195,0 chrXVI 900028 . G T 1910 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2298;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.11;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1943,204,0 chrXVI 900148 . C A 3037 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.1472;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.50;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:3070,336,0 chrXVI 900169 . C T 2311 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.3553;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.10;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,121:121:99:2344,261,0 chrXVI 900283 . G A 1430 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1150;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=14.90;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,91:96:99:1463,159,0 chrXVI 900340 . T C 1467 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=4.191;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=0.742;QD=17.26;ReadPosRankSum=1.691;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:1,83:85:99:1500,174,0 chrXVI 900385 . G C 1282 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=16.23;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1315,147,0 chrXVI 900472 . C T 2008 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=15.81;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2041,219,0 chrXVI 900592 . A C 1916 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.7130;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.35;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,99:99:99:1949,219,0 chrXVI 900602 . C T 1989 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.94;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,94:95:99:2022,216,0 chrXVI 900650 . A G 1998 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.683;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.911;QD=20.39;ReadPosRankSum=1.696;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:1,96:98:99:2031,234,0 chrXVI 900736 . A G 2660 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=120;Dels=0.00;FS=12.615;HaplotypeScore=10.6668;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.783;QD=22.17;ReadPosRankSum=2.345;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:2,116:120:99:2693,315,0 chrXVI 900811 . A G 1823 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.70;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1856,210,0 chrXVI 900827 . T C 1735 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.17;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1768,204,0 chrXVI 900907 . T C 1318 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.38;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1351,156,0 chrXVI 901021 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.32;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:1984,219,0 chrXVI 901087 . T C 2059 PASS AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.2604;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=15.03;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,135:137:99:2092,237,0 chrXVI 901096 . T C 2065 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=15.30;SB=-1.107e+03 GT:AD:DP:GQ:PL 1/1:0,135:135:99:2098,237,0 chrXVI 901126 . C A 2331 PASS AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=15.86;SB=-1.404e+03 GT:AD:DP:GQ:PL 1/1:0,147:147:99:2364,258,0 chrXVI 901264 . A G 1735 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.69;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:1768,204,0 chrXVI 901342 . A G 1333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.247;QD=17.31;ReadPosRankSum=1.642;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1366,153,0 chrXVI 901564 . G T 1491 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.7525;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=13.68;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:1524,168,0 chrXVI 901666 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.75;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:1945,222,0 chrXVI 901669 . G C 1941 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.84;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,102:103:99:1974,225,0 chrXVI 901786 . T C 1064 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1097,126,0 chrXVI 902382 . T C 2224 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.17;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,116:116:99:2257,261,0 chrXVI 902520 . C A 1675 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6290;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.94;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1708,186,0 chrXVI 902568 . C T 1456 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1489,162,0 chrXVI 902643 . T C 1845 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.05;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,91:92:99:1878,213,0 chrXVI 902706 . A G 1511 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.577;QD=16.25;ReadPosRankSum=1.658;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,92:93:99:1544,177,0 chrXVI 902709 . A G 1492 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;MQRankSum=-1.580;QD=16.40;ReadPosRankSum=1.656;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,90:91:99:1525,171,0 chrXVI 902931 . T C 1755 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.89;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1788,204,0 chrXVI 903285 . T C 2065 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=3.042;HaplotypeScore=8.4546;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.794;QD=19.30;ReadPosRankSum=2.404;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2098,246,0 chrXVI 903372 . T C 2066 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.98;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2099,246,0 chrXVI 903396 . T C 2172 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.30;SB=-1.144e+03 GT:AD:DP:GQ:PL 1/1:0,107:107:99:2205,252,0 chrXVI 903504 . T C 1940 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.58;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:1973,225,0 chrXVI 903657 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.22;SB=-1.155e+03 GT:AD:DP:GQ:PL 1/1:0,101:102:99:1993,225,0 chrXVI 904122 . C T 1382 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.8645;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.46;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1415,153,0 chrXVI 904203 . T C 1332 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.070;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.356;QD=18.00;ReadPosRankSum=1.637;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:1365,159,0 chrXVI 904215 . G T 1460 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.00;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1493,159,0 chrXVI 904377 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.55;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1841,201,0 chrXVI 904458 . C T 1268 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.49;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1301,141,0 chrXVI 904623 . C T 1602 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.8033;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.41;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1635,180,0 chrXVI 904707 . A T 1944 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.36;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1977,219,0 chrXVI 904893 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.38;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,110:111:99:2073,228,0 chrXVI 905208 . G A 2722 PASS AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.1294;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.67;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,115:115:99:2755,300,0 chrXVI 905582 . G A 2310 PASS AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.09;SB=-1.463e+03 GT:AD:DP:GQ:PL 1/1:0,120:121:99:2343,252,0 chrXVI 905589 . T C 2099 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=17.94;SB=-1.471e+03 GT:AD:DP:GQ:PL 1/1:0,116:117:99:2132,240,0 chrXVI 905685 . A G 1885 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.778;QD=19.04;ReadPosRankSum=1.661;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:1,97:99:99:1918,216,0 chrXVI 905754 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.71;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1472,171,0 chrXVI 905910 . A C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.520;QD=18.07;ReadPosRankSum=1.689;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1497,171,0 chrXVI 906240 . A G 1416 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.315;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.121;QD=20.82;ReadPosRankSum=1.681;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1449,171,0 chrXVI 906309 . G A 1554 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1587,171,0 chrXVI 906363 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.06;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1511,168,0 chrXVI 906471 . A G 912 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=-1.015;QD=18.24;ReadPosRankSum=2.352;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:2,48:50:99:945,108,0 chrXVI 906509 . T C 933 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.85;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:966,108,0 chrXVI 906513 . A G 993 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.59;SB=-1.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1026,114,0 chrXVI 906549 . A G 810 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.00;SB=-1.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:843,96,0 chrXVI 906627 . A G 647 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=14.07;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,46:46:78:680,78,0 chrXVI 907427 . T C 2016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=9.791;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.403;QD=18.84;ReadPosRankSum=2.404;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:2,105:107:99:2049,240,0 chrXVI 907815 . T C 1486 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.36;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1519,174,0 chrXVI 908134 . A C 1053 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.732;QD=16.98;ReadPosRankSum=-0.767;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:62:99:1086,107,0 chrXVI 908156 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=14.71;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1048,117,0 chrXVI 908852 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.86;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:1891,216,0 chrXVI 908942 . G C 1766 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.30;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1799,207,0 chrXVI 909096 . A G 2196 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.449;QD=19.78;ReadPosRankSum=1.669;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2229,249,0 chrXVI 909340 . A G 2127 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.45;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,103:104:99:2160,249,0 chrXVI 909392 . A G 1500 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.713;QD=17.65;ReadPosRankSum=1.691;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1533,174,0 chrXVI 909597 . C A 1681 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.55;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1714,186,0 chrXVI 909611 . T C 1680 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=68.9555;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.24;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,82:83:99:1713,204,0 chrXVI 909814 . T C 1068 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.22;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1101,123,0 chrXVI 909852 . C T 989 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=17.66;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1022,111,0 chrXVI 909859 . C T 987 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=17.02;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1020,108,0 chrXVI 909889 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.29;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1226,141,0 chrXVI 909952 . T C 1497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=71;Dels=0.00;FS=2.597;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.072;QD=21.08;ReadPosRankSum=2.901;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:99:1530,177,0 chrXVI 910009 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.14;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1450,156,0 chrXVI 910012 . T C 1166 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=1.044;QD=20.10;ReadPosRankSum=2.365;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:2,56:58:99:1199,135,0 chrXVI 910109 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.67;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1892,207,0 chrXVI 910123 . G C 1423 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.76;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1456,162,0 chrXVI 910435 . A G 2832 PASS AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.66;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,125:125:99:2865,336,0 chrXVI 910525 . T C 2555 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.84;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,115:117:99:2588,300,0 chrXVI 911029 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=16.59;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,100:100:99:1692,186,0 chrXVI 911044 . A C 2212 PASS AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.98;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,123:123:99:2245,249,0 chrXVI 911238 . A G 988 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:1021,111,0 chrXVI 911554 . C T 1081 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.79;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1114,120,0 chrXVI 912387 . C T 1693 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.43;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1726,189,0 chrXVI 912678 . A G 2031 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.08;MQ0=0;QD=20.94;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2064,231,0 chrXVI 912753 . T C 1386 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.52;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1419,162,0 chrXVI 912878 . C T 1174 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.24;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1207,132,0 chrXVI 913419 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:68:99:1433,162,0 chrXVI 914142 . A G 1732 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.14;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1765,204,0 chrXVI 914217 . T C 2174 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=105;Dels=0.00;FS=3.222;HaplotypeScore=6.7426;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.699;QD=20.70;ReadPosRankSum=1.666;SB=-1.254e+03 GT:AD:DP:GQ:PL 1/1:1,104:105:99:2207,249,0 chrXVI 914319 . A G 2007 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.91;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2040,228,0 chrXVI 914589 . A G 1842 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.80;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1875,210,0 chrXVI 914775 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.99;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1770,192,0 chrXVI 915113 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=15.77;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1153,129,0 chrXVI 915200 . G C 1855 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.16;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,88:92:99:1888,216,0 chrXVI 915973 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,103:103:99:2088,234,0 chrXVI 916067 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.10;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1500,162,0 chrXVI 916248 . T C 2204 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2237,252,0 chrXVI 916309 . T A 1735 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1768,192,0 chrXVI 916830 . A T 1564 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.049;QD=21.72;ReadPosRankSum=1.683;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1597,174,0 chrXVI 916985 . A G 2152 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.52;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:2185,249,0 chrXVI 917010 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.22;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1944,222,0 chrXVI 917110 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.49;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1406,159,0 chrXVI 917323 . G C 1780 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.19;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,83:84:99:1813,213,0 chrXVI 917353 . A G 1679 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.836;QD=19.75;ReadPosRankSum=1.691;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:1,84:85:99:1712,198,0 chrXVI 917515 . A G 1980 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2013,225,0 chrXVI 918199 . C A 985 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.42;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1018,111,0 chrXVI 918292 . G A 1188 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1221,138,0 chrXVI 918448 . T C 1649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.109;QD=20.87;ReadPosRankSum=2.388;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:2,77:79:99:1682,192,0 chrXVI 918505 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1945,213,0 chrXVI 918565 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.19;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:99:2067,246,0 chrXVI 918772 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:1942,213,0 chrXVI 918807 . A G 1362 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4156;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.02;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1395,159,0 chrXVI 918999 . T C 953 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.28;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:986,111,0 chrXVI 919046 . A G 932 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=15.53;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:965,111,0 chrXVI 919303 . A T 1160 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.051;QD=19.02;ReadPosRankSum=1.675;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1193,135,0 chrXVI 919524 . C A 2179 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.46;SB=-1.241e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2212,240,0 chrXVI 919665 . G A 1571 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.10;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1604,171,0 chrXVI 919704 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.01;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,83:86:99:1668,192,0 chrXVI 919848 . A G 1656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.390;QD=20.44;ReadPosRankSum=1.646;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:1,79:81:99:1689,192,0 chrXVI 920048 . T C 1391 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.61;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1424,159,0 chrXVI 920178 . G C 1493 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.77;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,82:84:99:1526,174,0 chrXVI 920191 . A G 1620 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.62;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1653,186,0 chrXVI 920247 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.95;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:1702,195,0 chrXVI 920487 . A G 991 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=15.73;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1024,114,0 chrXVI 920519 . A C 939 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.929;QD=13.61;ReadPosRankSum=1.682;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,68:69:99:972,111,0 chrXVI 920829 . C T 1334 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.728;QD=15.88;ReadPosRankSum=-0.312;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:2,82:84:99:1367,156,0 chrXVI 920832 . G C 1377 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=16.01;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1410,162,0 chrXVI 920877 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.17;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1475,168,0 chrXVI 921002 . A C 1549 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.9657;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.12;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,80:81:99:1582,180,0 chrXVI 921116 . A G 2656 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.218;QD=19.11;ReadPosRankSum=1.655;SB=-1.487e+03 GT:AD:DP:GQ:PL 1/1:1,134:139:99:2689,309,0 chrXVI 921117 . A C 2414 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DP=138;Dels=0.00;FS=3.617;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.531;QD=17.49;ReadPosRankSum=-0.602;SB=-1.390e+03 GT:AD:DP:GQ:PL 1/1:1,137:138:99:2447,265,0 chrXVI 921271 . A C 1758 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.68;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,84:85:99:1791,201,0 chrXVI 921352 . A C 657 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=11.14;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:78:690,78,0 chrXVI 921562 . A G 1923 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.9207;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-1.657;QD=20.90;ReadPosRankSum=1.694;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:1956,222,0 chrXVI 921595 . C A 1526 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6227;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.62;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:74:99:1559,168,0 chrXVI 921610 . G A 1398 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.87;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1431,156,0 chrXVI 921728 . C T 1283 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.37;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1316,141,0 chrXVI 921737 . G A 1181 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.89;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1214,132,0 chrXVI 921845 . G A 1500 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=13.7591;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.24;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:1533,174,0 chrXVI 921998 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.90;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1207,132,0 chrXVI 922220 . A G 1525 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2045;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=15.89;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,94:96:99:1558,180,0 chrXVI 922297 . T C 1496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.000;QD=19.68;ReadPosRankSum=1.641;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:1,75:76:99:1529,174,0 chrXVI 922477 . T C 2357 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.34;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2390,267,0 chrXVI 922622 . A C 1590 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=18.07;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:1623,180,0 chrXVI 922782 . T C 2604 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;DP=139;Dels=0.02;FS=26.914;HaplotypeScore=15.1858;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.112;QD=18.73;ReadPosRankSum=2.948;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:3,132:136:99:2637,291,0 chrXVI 922830 . C T 2227 PASS AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=16.50;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,134:135:99:2260,246,0 chrXVI 922852 . A G 1650 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.044;DP=133;Dels=0.00;FS=8.549;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=-0.476;QD=12.41;ReadPosRankSum=3.389;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:4,123:133:99:1683,195,0 chrXVI 923017 . T C 783 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:96:816,96,0 chrXVI 923317 . A G 1649 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=24.25;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1682,189,0 chrXVI 923621 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.71;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1308,150,0 chrXVI 923648 . G A 829 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=15.35;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:96:862,96,0 chrXVI 923654 . T C 727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.706;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;MQRankSum=-1.323;QD=12.75;ReadPosRankSum=2.364;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:87:760,87,0 chrXVI 923671 . A C 624 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=11.56;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:75:657,75,0 chrXVI 923684 . G C 502 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=9.65;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:60:535,60,0 chrXVI 923699 . A G 488 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.64;MQ0=0;QD=8.87;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:60:521,60,0 chrXVI 923733 . T A 841 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=13.56;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:96:874,96,0 chrXVI 923750 . A G 1087 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.732;QD=16.72;ReadPosRankSum=1.679;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1120,126,0 chrXVI 923772 . T A 1249 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.683;QD=17.59;ReadPosRankSum=1.683;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:1,69:71:99:1282,138,0 chrXVI 923850 . C G 1824 PASS AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9807;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.05;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,106:107:99:1857,213,0 chrXVI 923860 . A C 1755 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=16.56;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:1788,201,0 chrXVI 923907 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.20;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,81:83:99:1461,162,0 chrXVI 924094 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.34;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1798,195,0 chrXVI 924180 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.56;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:1493,165,0 chrXVI 924915 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.60;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:68:99:1434,162,0 chrXVI 925012 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=18.52;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1385,150,0 chrXVI 925027 . A G 1392 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=19.07;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1425,159,0 chrXVI 925033 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.03;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1457,162,0 chrXVI 925093 . T C 1495 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.43;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:1,89:91:99:1528,174,0 chrXVI 925172 . C G 1060 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.63;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:54:99:1093,123,0 chrXVI 925491 . A T 1206 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.708;HaplotypeScore=3.3887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.543;QD=18.00;ReadPosRankSum=1.681;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1239,132,0 chrXVI 925492 . T C 1145 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.35;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1178,135,0 chrXVI 925572 . C T 1915 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.52;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,88:89:99:1948,207,0 chrXVI 925584 . T C 1870 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.473;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.993;QD=21.01;ReadPosRankSum=1.654;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:1,88:89:99:1903,216,0 chrXVI 925593 . G C 1853 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.36;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1886,219,0 chrXVI 925684 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.56;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2018,231,0 chrXVI 926181 . C T 1490 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.28;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1523,168,0 chrXVI 926272 . G T 1803 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.39;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,91:93:99:1836,201,0 chrXVI 926352 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1551,171,0 chrXVI 926512 . A G 1515 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.96;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1548,171,0 chrXVI 926851 . A G 1112 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.17;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1145,129,0 chrXVI 926938 . A G 1729 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.157;QD=19.21;ReadPosRankSum=1.614;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:1,87:90:99:1762,201,0 chrXVI 927065 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.20;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1572,171,0 chrXVI 927096 . G A 980 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;QD=12.10;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1013,111,0 chrXVI 927113 . G A 823 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=10.16;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:93:856,93,0 chrXVI 927116 . A G 743 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.349;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;MQRankSum=-1.559;QD=9.29;ReadPosRankSum=1.689;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,79:80:90:776,90,0 chrXVI 927120 . C G 763 SnpCluster AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.39;MQ0=0;QD=9.91;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:93:796,93,0 chrXVI 927142 . T A 884 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.19;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:917,99,0 chrXVI 927175 . A G 974 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=12.99;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1007,114,0 chrXVI 927399 . G A 1529 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.95;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1562,174,0 chrXVI 927723 . T C 1620 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.80;SB=-1.055e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:1653,186,0 chrXVI 927827 . T G 2327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.300;QD=22.37;ReadPosRankSum=1.699;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:1,103:104:99:2360,270,0 chrXVI 927881 . T C 2507 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=120;Dels=0.00;FS=8.119;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.542;QD=20.89;ReadPosRankSum=3.121;SB=-1.269e+03 GT:AD:DP:GQ:PL 1/1:4,116:120:99:2540,291,0 chrXVI 927907 . A C 2064 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=127;Dels=0.00;FS=3.809;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.732;QD=16.25;ReadPosRankSum=1.704;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:1,124:127:99:2097,240,0 chrXVI 927911 . T G 1951 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.959;QD=17.42;ReadPosRankSum=1.701;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:1,111:112:99:1984,225,0 chrXVI 927980 . A G 1859 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.3497;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.59;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,98:100:99:1892,216,0 chrXVI 928226 . T C 1633 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.7661;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=15.70;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,102:104:99:1666,195,0 chrXVI 928398 . G C 3387.01 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.02;SB=-1.128e+03 GT:AD:DP:GQ:PL 1/1:0,140:141:99:3387,378,0 chrXVI 928457 . C T 2364 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.18;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2397,258,0 chrXVI 928512 . T G 1620 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=23.48;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1653,195,0 chrXVI 928535 . T C 1427 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=23.02;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1460,165,0 chrXVI 928569 . T A 1042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=3.786;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.787;QD=18.61;ReadPosRankSum=1.606;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1075,120,0 chrXVI 928648 . G A 2726 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.72;SB=-1.240e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:2759,303,0 chrXVI 928675 . T C 2474 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=133;Dels=0.00;FS=8.041;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.268;QD=18.60;ReadPosRankSum=2.376;SB=-1.302e+03 GT:AD:DP:GQ:PL 1/1:2,131:133:99:2507,282,0 chrXVI 928687 . A G 2339 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.42;SB=-1.296e+03 GT:AD:DP:GQ:PL 1/1:0,124:127:99:2372,264,0 chrXVI 928823 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.96;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1455,156,0 chrXVI 928847 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=8.8608;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=15.00;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1053,114,0 chrXVI 928877 . T C 704 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;MQRankSum=-1.235;QD=11.17;ReadPosRankSum=2.372;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:2,61:63:84:737,84,0 chrXVI 928880 . A G 636 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=9.78;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:75:669,75,0 chrXVI 928973 . C T 1412 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=19.34;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1445,159,0 chrXVI 928974 . T C 1356 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=18.32;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1389,159,0 chrXVI 929067 . A G 1486 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=23.59;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1519,171,0 chrXVI 929314 . G T 356 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.68;MQ0=0;QD=10.17;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:42:389,42,0 chrXVI 929330 . C G 495 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=13.03;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:60:528,60,0 chrXVI 929334 . A T 547 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=13.34;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:63:580,63,0 chrXVI 929341 . A G 556 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=12.09;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:63:589,63,0 chrXVI 929405 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=15.57;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:905,102,0 chrXVI 929420 . T A 1148 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.52;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1181,132,0 chrXVI 929429 . G A 1205 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=18.83;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1238,138,0 chrXVI 929443 . G A 1078 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=16.84;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1111,132,0 chrXVI 929492 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.09;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1383,162,0 chrXVI 929522 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.24;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1418,153,0 chrXVI 929529 . C A 1218 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.03;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1251,141,0 chrXVI 929586 . T C 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=2.775;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=-0.167;QD=17.72;ReadPosRankSum=2.359;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:2,79:82:99:1486,165,0 chrXVI 929606 . A T 1321 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=18.87;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1354,150,0 chrXVI 929652 . G A 749 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=15.60;SB=-3.390e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:87:782,87,0 chrXVI 929678 . C T 481 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=12.66;SB=-2.020e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:60:514,60,0 chrXVI 929679 . C T 497 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=13.43;SB=-2.040e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:60:530,60,0 chrXVI 929716 . T C 188.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.60;MQ0=0;MQRankSum=0.867;QD=6.48;ReadPosRankSum=1.609;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:27:221,27,0 chrXVI 929721 . A T 194.01 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=14.7817;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=6.47;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:27:227,27,0 chrXVI 929744 . C T 431 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.97;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:51:464,51,0 chrXVI 929755 . T C 649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.543;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-0.333;QD=12.48;ReadPosRankSum=1.666;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:81:682,81,0 chrXVI 929903 . C T 3067 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=24.34;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,125:126:99:3100,336,0 chrXVI 930017 . A T 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=7.436;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.048;QD=20.49;ReadPosRankSum=2.386;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:2,75:77:99:1611,174,0 chrXVI 930048 . T C 1227 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;MQRankSum=1.112;QD=18.31;ReadPosRankSum=1.681;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1260,141,0 chrXVI 930071 . C T 1179 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=17.60;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1212,132,0 chrXVI 930128 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=12.96;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,103:105:99:1394,153,0 chrXVI 930148 . A C 1785 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;MQRankSum=-0.042;QD=14.40;ReadPosRankSum=1.704;SB=-1.443e+03 GT:AD:DP:GQ:PL 1/1:1,122:124:99:1818,201,0 chrXVI 930170 . A T 2068 PASS AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=15.21;SB=-1.672e+03 GT:AD:DP:GQ:PL 1/1:0,136:136:99:2101,228,0 chrXVI 930212 . G A 3081 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.14;SB=-1.627e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:3114,342,0 chrXVI 930235 . A T 2876 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.40;SB=-1.256e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2909,315,0 chrXVI 930236 . G T 2838 PASS AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.13;SB=-1.234e+03 GT:AD:DP:GQ:PL 1/1:0,141:141:99:2871,312,0 chrXVI 930248 . C G 2580 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.0153;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.70;SB=-1.125e+03 GT:AD:DP:GQ:PL 1/1:0,138:138:99:2613,303,0 chrXVI 930299 . A T 2097 PASS AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.56;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,102:102:99:2130,231,0 chrXVI 930341 . A G 2359 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=5.815;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.017;QD=22.90;ReadPosRankSum=1.698;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,102:103:99:2392,276,0 chrXVI 930431 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.8098;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=19.81;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1974,222,0 chrXVI 930549 . A T 1425 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.52;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1458,159,0 chrXVI 930581 . A T 1090 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=16.03;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1123,126,0 chrXVI 930732 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=16.53;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,78:79:99:1339,153,0 chrXVI 930801 . C T 1048 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.47;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1081,126,0 chrXVI 930805 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.18;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1183,132,0 chrXVI 930863 . T C 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.929;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.332;QD=20.40;ReadPosRankSum=1.659;SB=-2.940e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:992,108,0 chrXVI 930946 . A T 860 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=4.988;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.549;QD=20.98;ReadPosRankSum=1.648;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:893,99,0 chrXVI 930978 . A G 1037 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.20;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1070,117,0 chrXVI 930986 . G A 1016 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.17;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1049,114,0 chrXVI 931061 . G C 957 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.09;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:990,111,0 chrXVI 931077 . T C 1050 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=15.67;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1083,123,0 chrXVI 931141 . T C 957 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=14.72;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:990,114,0 chrXVI 931146 . C A 1013 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.83;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:1,62:64:99:1046,111,0 chrXVI 931153 . A G 919 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.6071;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=17.02;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:952,108,0 chrXVI 931213 . T C 677 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=15.74;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:81:710,81,0 chrXVI 931293 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.00;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1827,204,0 chrXVI 931338 . A T 1874 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.34;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:1907,210,0 chrXVI 931585 . G A 1373 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.51;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1406,153,0 chrXVI 931642 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1718,195,0 chrXVI 931814 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.98;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,85:89:99:1811,201,0 chrXVI 931903 . T C 1736 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=17.71;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1769,204,0 chrXVI 931948 . C T 1933 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.72;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:1966,213,0 chrXVI 932030 . T A 1754 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.20;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1787,192,0 chrXVI 932253 . G A 2806 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0282;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.75;SB=-1.420e+03 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2839,309,0 chrXVI 932302 . A G 2192 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.57;SB=-1.173e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:2225,249,0 chrXVI 932310 . T C 1884 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=17.94;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,104:105:99:1917,219,0 chrXVI 932313 . G C 1995 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=18.47;SB=-1.120e+03 GT:AD:DP:GQ:PL 1/1:0,107:108:99:2028,228,0 chrXVI 932535 . T G 1305 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.17;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:1338,150,0 chrXVI 932536 . G C 1244 SnpCluster AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=16.59;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1277,147,0 chrXVI 932537 . A G 1251 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.393;QD=16.68;ReadPosRankSum=1.686;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:1284,150,0 chrXVI 932662 . A G 778 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=3;MQRankSum=-1.675;QD=12.16;ReadPosRankSum=1.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,62:64:93:811,93,0 chrXVI 932770 . A C 695 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=13.37;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,52:52:87:728,87,0 chrXVI 932785 . C T 814 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-0.392;QD=15.36;ReadPosRankSum=2.865;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:3,49:53:90:847,90,0 chrXVI 932855 . C T 591 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=13.74;SB=-2.801e+01 GT:AD:DP:GQ:PL 1/1:0,42:43:69:624,69,0 chrXVI 932875 . C T 203.01 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=7.81;SB=-2.354e-02 GT:AD:DP:GQ:PL 1/1:0,26:26:27:236,27,0 chrXVI 932882 . C A 77.51 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=4.56;SB=-1.323e+02 GT:AD:DP:GQ:PL 1/1:0,16:17:12:110,12,0 chrXVI 933137 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.94;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1517,177,0 chrXVI 933312 . A G 2343 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=133;Dels=0.00;FS=3.177;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;MQRankSum=-1.029;QD=17.62;ReadPosRankSum=1.706;SB=-1.613e+03 GT:AD:DP:GQ:PL 1/1:1,132:133:99:2376,267,0 chrXVI 933316 . C T 2426 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.58;SB=-1.675e+03 GT:AD:DP:GQ:PL 1/1:0,137:138:99:2459,270,0 chrXVI 933358 . G A 2715 PASS AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.86;SB=-1.579e+03 GT:AD:DP:GQ:PL 1/1:0,152:152:99:2748,303,0 chrXVI 933378 . T C 2758 PASS AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.1754;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.13;SB=-1.690e+03 GT:AD:DP:GQ:PL 1/1:0,161:161:99:2791,318,0 chrXVI 933594 . A G 1691 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.490;QD=18.18;ReadPosRankSum=1.694;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:1,91:93:99:1724,189,0 chrXVI 933773 . C A 1706 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.05;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1739,189,0 chrXVI 934582 . C T 1111 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.83;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1144,126,0 chrXVI 934730 . T C 1791 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.693;QD=22.11;ReadPosRankSum=2.388;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:2,78:81:99:1824,204,0 chrXVI 934801 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9364;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.05;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,73:75:99:1762,195,0 chrXVI 934877 . T C 1359 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.70;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1392,153,0 chrXVI 934884 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.20;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:1548,168,0 chrXVI 935125 . A G 2158 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=3.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.297;QD=19.27;ReadPosRankSum=2.362;SB=-1.360e+03 GT:AD:DP:GQ:PL 1/1:2,110:112:99:2191,249,0 chrXVI 935140 . C G 1680 PASS AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.15;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,101:104:99:1713,195,0 chrXVI 935143 . C T 1669 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.76;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1702,189,0 chrXVI 935215 . C A 1761 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.57;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:1794,192,0 chrXVI 935251 . A T 1600 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.05;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:1633,177,0 chrXVI 935524 . C T 2907 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.07;SB=-1.405e+03 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2940,318,0 chrXVI 935870 . T C 3189 PASS AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.98;SB=-1.306e+03 GT:AD:DP:GQ:PL 1/1:0,133:133:99:3222,372,0 chrXVI 936111 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.41;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,85:86:99:1874,207,0 chrXVI 936241 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.14;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:1805,204,0 chrXVI 936393 . G C 1096 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.68;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1129,129,0 chrXVI 936424 . T C 831 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=16.96;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:864,99,0 chrXVI 936431 . G A 768 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=16.70;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:90:801,90,0 chrXVI 936603 . G A 922 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=39.4323;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=17.73;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:955,102,0 chrXVI 936638 . G C 673 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.23;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:706,78,0 chrXVI 936775 . C T 792 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.00;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:825,90,0 chrXVI 936989 . T C 1150 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.83;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1183,132,0 chrXVI 937101 . G C 1120 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.74;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1153,132,0 chrXVI 937144 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.51;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1243,138,0 chrXVI 937324 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.95;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:1587,183,0 chrXVI 937373 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.42;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1483,168,0 chrXVI 937470 . A C 1712 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.67;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1745,198,0 chrXVI 937542 . G A 2447 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.45;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,109:109:99:2480,270,0 chrXVI 937566 . G T 2988 PASS AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3416;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.65;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,138:138:99:3021,330,0 chrXVI 937701 . A T 2445 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=3.472;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.351;QD=22.43;ReadPosRankSum=1.637;SB=-1.208e+03 GT:AD:DP:GQ:PL 1/1:1,108:109:99:2478,273,0 chrXVI 937780 . A G 1647 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=88;Dels=0.00;FS=3.003;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.994;QD=18.72;ReadPosRankSum=2.394;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:2,86:88:99:1680,152,0 chrXVI 937790 . A G 1696 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.8971;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.64;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,90:91:99:1729,198,0 chrXVI 937822 . G T 2203 PASS AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.40;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,108:108:99:2236,243,0 chrXVI 937854 . G T 1933 PASS AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7152;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=17.11;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,113:113:99:1966,213,0 chrXVI 938107 . A T 2248 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=3.380;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.247;QD=22.94;ReadPosRankSum=1.697;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2281,252,0 chrXVI 938143 . G A 2441 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.17;SB=-1.179e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:2474,267,0 chrXVI 938304 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.95;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:66:99:1482,162,0 chrXVI 938478 . A G 2436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.602;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.575;QD=21.95;ReadPosRankSum=1.701;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:1,109:111:99:2469,285,0 chrXVI 938581 . T G 2200 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=99;Dels=0.00;FS=2.966;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.465;QD=22.22;ReadPosRankSum=2.349;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:2,97:99:99:2233,252,0 chrXVI 938727 . A G 1678 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0679;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.66;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:1711,189,0 chrXVI 938739 . G A 1512 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9134;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.62;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,89:91:99:1545,177,0 chrXVI 938951 . C T 523 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=12.45;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:0,42:42:60:556,60,0 chrXVI 939003 . G A 426 filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=13.31;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,32:32:51:459,51,0 chrXVI 939137 . G A 323 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=14.04;SB=-2.901e+01 GT:AD:DP:GQ:PL 1/1:0,23:23:39:356,39,0 chrXVI 939205 . T A 179.03 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=8.53;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:0,21:21:24:212,24,0 chrXVI 939248 . A T 466 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=14.12;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:0,33:33:54:499,54,0 chrXVI 939489 . G C 872 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=20.76;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:905,102,0 chrXVI 939501 . A T 1012 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=56;Dels=0.00;FS=7.404;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=0.850;QD=18.07;ReadPosRankSum=1.606;SB=-2.350e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1045,114,0 chrXVI 939609 . A G 1027 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.33;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1060,117,0 chrXVI 939712 . G T 1303 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=16.29;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:1336,147,0 chrXVI 939714 . T A 1299 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=16.65;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1332,150,0 chrXVI 939734 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=14.97;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1335,150,0 chrXVI 939747 . T C 1118 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-1.443;QD=13.31;ReadPosRankSum=1.691;SB=-9.730e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:1151,135,0 chrXVI 939830 . A G 2286 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=4.364;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.835;QD=20.05;ReadPosRankSum=1.701;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:1,111:114:99:2319,270,0 chrXVI 939832 . A T 2486 PASS AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.25;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2519,279,0 chrXVI 939982 . A G 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.479;QD=21.27;ReadPosRankSum=1.690;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1777,210,0 chrXVI 939999 . G A 2083 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.47;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,96:97:99:2116,234,0 chrXVI 940254 . C T 2281 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.74;SB=-1.178e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:2314,249,0 chrXVI 940368 . T C 2280 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.505;QD=21.31;ReadPosRankSum=1.667;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:1,106:107:99:2313,261,0 chrXVI 940653 . A G 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.364;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.295;QD=16.76;ReadPosRankSum=1.658;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,93:94:99:1608,165,0 chrXVI 941088 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.84;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:1585,180,0 chrXVI 941176 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.17;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1515,171,0 chrXVI 941267 . T C 1508 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.171;QD=20.94;ReadPosRankSum=1.683;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:1,70:72:99:1541,177,0 chrXVI 941326 . G A 1297 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=17.77;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,72:73:99:1330,144,0 chrXVI 941337 . G A 1453 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.94;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1486,159,0 chrXVI 941366 . C T 1504 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9564;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=15.35;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,98:98:99:1537,165,0 chrXVI 941560 . G T 2551 PASS AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=19.78;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,129:129:99:2584,279,0 chrXVI 941562 . G T 2497 PASS AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=19.82;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,126:126:99:2530,276,0 chrXVI 941642 . C T 2846 PASS AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.41;SB=-1.161e+03 GT:AD:DP:GQ:PL 1/1:0,127:127:99:2879,315,0 chrXVI 941772 . A T 2400 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=20.34;SB=-1.267e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2433,270,0 chrXVI 941801 . T C 2576 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=6.561;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.462;QD=20.44;ReadPosRankSum=2.391;SB=-1.466e+03 GT:AD:DP:GQ:PL 1/1:2,123:126:99:2609,300,0 chrXVI 941831 . G T 3441.01 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.57;SB=-1.724e+03 GT:AD:DP:GQ:PL 1/1:0,146:146:99:3441,375,0 chrXVI 941879 . A G 3346.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=159;Dels=0.00;FS=2.954;HaplotypeScore=9.7269;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=1.781;QD=21.04;ReadPosRankSum=2.418;SB=-1.687e+03 GT:AD:DP:GQ:PL 1/1:2,156:159:99:3346,381,0 chrXVI 942010 . G C 2528 PASS AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.32;SB=-1.516e+03 GT:AD:DP:GQ:PL 1/1:0,144:146:99:2561,291,0 chrXVI 942021 . T C 2350 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=150;Dels=0.00;FS=8.217;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.244;QD=15.67;ReadPosRankSum=2.298;SB=-1.418e+03 GT:AD:DP:GQ:PL 1/1:2,144:150:99:2383,273,0 chrXVI 942107 . G T 2522 PASS AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3617;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=19.70;SB=-1.384e+03 GT:AD:DP:GQ:PL 1/1:0,127:128:99:2555,294,0 chrXVI 942116 . A C 2196 PASS AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=18.45;SB=-1.350e+03 GT:AD:DP:GQ:PL 1/1:0,119:119:99:2229,261,0 chrXVI 942124 . A T 2185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.476;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;MQRankSum=-1.145;QD=18.52;ReadPosRankSum=1.703;SB=-1.329e+03 GT:AD:DP:GQ:PL 1/1:1,117:118:99:2218,243,0 chrXVI 942139 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=16.52;SB=-1.366e+03 GT:AD:DP:GQ:PL 1/1:0,115:116:99:1949,219,0 chrXVI 942173 . G A 2081 PASS AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=17.64;SB=-1.204e+03 GT:AD:DP:GQ:PL 1/1:0,118:118:99:2114,240,0 chrXVI 942206 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=20.84;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,94:94:99:1992,237,0 chrXVI 942208 . G C 2104 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=21.69;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2137,249,0 chrXVI 942241 . G A 2086 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=19.68;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:2119,234,0 chrXVI 942307 . G A 1894 SnpCluster AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.95;MQ0=0;QD=16.91;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,112:112:99:1927,219,0 chrXVI 942311 . A G 1840 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;MQRankSum=-0.608;QD=16.14;ReadPosRankSum=1.702;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:1,113:114:99:1873,222,0 chrXVI 942315 . A G 1983 SnpCluster AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=16.95;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,117:117:99:2016,237,0 chrXVI 942354 . G T 1946 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=150;Dels=0.00;FS=65.082;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=3.336;QD=12.97;ReadPosRankSum=3.212;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:11,139:150:99:1979,219,0 chrXVI 942359 . G A 1995 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=151;Dels=0.00;FS=56.004;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=1;MQRankSum=3.122;QD=13.21;ReadPosRankSum=1.939;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:12,139:151:99:2028,225,0 chrXVI 942426 . T C 2454.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.150;DP=288;Dels=0.00;FS=80.524;HaplotypeScore=153.7080;MLEAC=1;MLEAF=0.500;MQ=31.41;MQ0=9;MQRankSum=2.028;QD=8.52;ReadPosRankSum=4.200;SB=-9.070e+02 GT:AD:DP:GQ:PL 0/1:128,154:288:99:2484,0,1635 chrXVI 942427 . G A 5492.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.796;DP=284;Dels=0.00;FS=0.000;HaplotypeScore=126.8135;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=9;MQRankSum=-1.173;QD=19.34;ReadPosRankSum=-0.760;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:4,280:284:99:5492,606,0 chrXVI 942466 . G T 5235.01 PASS AC=2;AF=1.00;AN=2;DP=240;Dels=0.00;FS=0.000;HaplotypeScore=6.8108;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;QD=21.81;SB=-1.237e+03 GT:AD:DP:GQ:PL 1/1:0,240:240:99:5235,588,0 chrXVI 942516 . C T 87.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DP=10;Dels=0.00;FS=15.563;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=1;MQRankSum=1.179;QD=8.73;ReadPosRankSum=1.179;SB=-2.044e-01 GT:AD:DP:GQ:PL 1/1:3,7:10:15:120,15,0 chrXVI 942550 . G A 133.13 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.07;MQ0=2;QD=7.40;SB=-1.399e-01 GT:AD:DP:GQ:PL 1/1:0,17:18:18:166,18,0 chrXVI 942567 . G A 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;DP=81;Dels=0.00;FS=81.255;HaplotypeScore=10.3961;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=4;MQRankSum=0.497;QD=1.22;ReadPosRankSum=1.476;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,13:81:99:129,0,721 chrXVI 942580 . T G 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.877;DP=136;Dels=0.00;FS=49.052;HaplotypeScore=12.1714;MLEAC=1;MLEAF=0.500;MQ=30.40;MQ0=9;MQRankSum=-3.521;QD=0.83;ReadPosRankSum=-0.823;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,29:136:99:143,0,1612 chrXVI 942589 . G A 2049 filter AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=10;QD=13.94;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,146:147:99:2082,234,0 chrXVI 942620 . G A 838.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.253;DP=188;Dels=0.00;FS=134.842;HaplotypeScore=4.7643;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=10;MQRankSum=1.567;QD=4.46;ReadPosRankSum=-2.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:111,77:188:99:868,0,1580 chrXVI 942679 . T A 591 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.638;DP=106;Dels=0.00;FS=41.532;HaplotypeScore=165.6293;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=3;MQRankSum=1.259;QD=5.58;ReadPosRankSum=-8.161;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:51,55:106:69:624,69,0 chrXVI 942680 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;DP=109;Dels=0.00;FS=59.721;HaplotypeScore=107.6018;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=4;MQRankSum=3.569;QD=0.33;ReadPosRankSum=-1.015;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:103,6:109:66:66,0,387 chrXVI 942690 . A G 413.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.236;DP=96;Dels=0.00;FS=17.082;HaplotypeScore=15.4619;MLEAC=1;MLEAF=0.500;MQ=27.04;MQ0=4;MQRankSum=-1.919;QD=4.30;ReadPosRankSum=2.620;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,41:96:99:443,0,623 chrXVI 942691 . A G 1110 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.413;DP=96;Dels=0.00;FS=39.183;HaplotypeScore=11.4942;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=4;MQRankSum=-2.067;QD=11.56;ReadPosRankSum=2.515;SB=-8.301e+01 GT:AD:DP:GQ:PL 1/1:5,91:96:43:1143,43,0 chrXVI 942741 . A C 242.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=32.5851;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=2;MQRankSum=0.345;QD=2.24;ReadPosRankSum=1.737;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,34:108:99:272,0,632 chrXVI 942743 . A C 532.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=33.8360;MLEAC=1;MLEAF=0.500;MQ=27.81;MQ0=2;MQRankSum=-0.556;QD=4.88;ReadPosRankSum=-1.987;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,74:109:99:562,0,271 chrXVI 942752 . G T 620 filter AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=33.0475;MLEAC=2;MLEAF=1.00;MQ=27.84;MQ0=2;QD=6.02;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,70:103:75:653,75,0 chrXVI 942767 . G A 466.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=64.4493;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=0;MQRankSum=0.925;QD=5.07;ReadPosRankSum=-4.560;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,57:92:99:496,0,321 chrXVI 942773 . A T 971 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=110.7881;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=0;MQRankSum=1.717;QD=10.91;ReadPosRankSum=4.062;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,81:89:99:1004,111,0 chrXVI 942785 . G A 403 filter AC=2;AF=1.00;AN=2;BaseQRankSum=4.277;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=147.8104;MLEAC=2;MLEAF=1.00;MQ=27.31;MQ0=0;MQRankSum=0.935;QD=4.48;ReadPosRankSum=-2.324;SB=3.00 GT:AD:DP:GQ:PL 1/1:52,38:90:48:436,48,0